Query 008948
Match_columns 548
No_of_seqs 461 out of 2842
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 18:32:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0039 Ferric reductase, NADH 100.0 6.1E-77 1.3E-81 661.0 23.7 455 2-488 39-495 (646)
2 PLN02631 ferric-chelate reduct 100.0 8.4E-50 1.8E-54 441.3 29.5 345 105-515 110-492 (699)
3 PLN02292 ferric-chelate reduct 100.0 3.2E-48 6.8E-53 429.6 30.8 318 137-517 169-514 (702)
4 PLN02844 oxidoreductase/ferric 100.0 9E-47 2E-51 419.2 32.5 323 105-485 112-449 (722)
5 COG4097 Predicted ferric reduc 100.0 1E-33 2.3E-38 283.0 24.9 311 148-512 51-380 (438)
6 cd06186 NOX_Duox_like_FAD_NADP 99.9 9.4E-24 2E-28 205.2 16.6 169 343-534 2-194 (210)
7 cd06189 flavin_oxioreductase N 99.9 1.7E-23 3.7E-28 205.6 18.3 169 341-537 2-186 (224)
8 PRK08051 fre FMN reductase; Va 99.9 3.5E-23 7.5E-28 204.8 19.5 172 338-537 3-190 (232)
9 cd06210 MMO_FAD_NAD_binding Me 99.9 9.8E-23 2.1E-27 201.7 19.0 174 338-538 2-197 (236)
10 cd06211 phenol_2-monooxygenase 99.9 2.5E-22 5.4E-27 199.3 19.1 173 338-537 7-199 (238)
11 cd06209 BenDO_FAD_NAD Benzoate 99.9 3.5E-22 7.6E-27 196.8 19.9 168 339-535 3-187 (228)
12 cd06191 FNR_iron_sulfur_bindin 99.9 5.3E-22 1.2E-26 195.9 20.7 171 341-536 2-191 (231)
13 cd06190 T4MO_e_transfer_like T 99.9 2.4E-22 5.1E-27 198.5 18.0 172 343-538 2-192 (232)
14 cd06212 monooxygenase_like The 99.9 3.8E-22 8.3E-27 197.0 19.3 174 339-539 2-195 (232)
15 cd06217 FNR_iron_sulfur_bindin 99.9 4.7E-22 1E-26 196.5 19.9 174 337-535 1-194 (235)
16 cd06187 O2ase_reductase_like T 99.9 2.6E-22 5.6E-27 197.0 17.7 170 342-537 1-186 (224)
17 cd06216 FNR_iron_sulfur_bindin 99.9 6E-22 1.3E-26 197.1 20.5 179 326-534 2-202 (243)
18 cd06215 FNR_iron_sulfur_bindin 99.9 8E-22 1.7E-26 194.4 19.8 169 341-534 2-189 (231)
19 PRK07609 CDP-6-deoxy-delta-3,4 99.9 4.4E-22 9.6E-27 207.8 18.5 173 337-537 102-294 (339)
20 cd06184 flavohem_like_fad_nad_ 99.9 2.1E-21 4.5E-26 193.6 21.3 176 337-534 6-202 (247)
21 cd06195 FNR1 Ferredoxin-NADP+ 99.9 9.5E-22 2.1E-26 195.4 18.0 166 341-533 1-185 (241)
22 cd06213 oxygenase_e_transfer_s 99.9 1.3E-21 2.9E-26 192.6 18.9 170 339-536 2-190 (227)
23 cd06188 NADH_quinone_reductase 99.9 1.1E-21 2.4E-26 199.8 17.8 172 338-536 10-240 (283)
24 PRK11872 antC anthranilate dio 99.9 1.7E-21 3.6E-26 203.5 19.2 171 337-535 106-295 (340)
25 cd06214 PA_degradation_oxidore 99.9 4.3E-21 9.3E-26 190.5 20.6 171 338-533 2-193 (241)
26 cd00322 FNR_like Ferredoxin re 99.9 4.2E-21 9E-26 187.6 19.1 160 344-529 2-177 (223)
27 PRK10684 HCP oxidoreductase, N 99.9 5.4E-21 1.2E-25 199.1 19.8 170 338-534 10-195 (332)
28 cd06221 sulfite_reductase_like 99.9 4.4E-21 9.5E-26 192.3 18.2 165 342-536 1-185 (253)
29 cd06197 FNR_like_2 FAD/NAD(P) 99.9 2.7E-21 5.9E-26 189.8 16.0 169 344-535 2-209 (220)
30 cd06196 FNR_like_1 Ferredoxin 99.9 6.2E-21 1.3E-25 186.5 17.6 162 339-534 2-179 (218)
31 PRK10926 ferredoxin-NADP reduc 99.9 1.3E-20 2.7E-25 188.4 19.8 168 337-532 4-189 (248)
32 cd06194 FNR_N-term_Iron_sulfur 99.9 5.8E-21 1.3E-25 187.3 16.9 142 342-508 1-158 (222)
33 cd06198 FNR_like_3 NAD(P) bind 99.9 9.5E-21 2.1E-25 185.1 16.7 139 350-512 7-159 (216)
34 PRK13289 bifunctional nitric o 99.9 2.3E-20 5E-25 199.1 21.2 174 336-534 153-351 (399)
35 PRK08345 cytochrome-c3 hydroge 99.9 1.8E-20 3.9E-25 191.4 18.8 146 337-508 5-170 (289)
36 PRK08221 anaerobic sulfite red 99.9 2.3E-20 5.1E-25 188.0 19.4 164 338-535 8-185 (263)
37 PRK00054 dihydroorotate dehydr 99.9 2.1E-20 4.6E-25 186.9 18.6 165 337-536 4-178 (250)
38 PLN03116 ferredoxin--NADP+ red 99.9 2.5E-20 5.4E-25 191.9 19.5 172 338-535 25-248 (307)
39 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 2.9E-20 6.3E-25 195.1 20.2 169 338-531 2-192 (352)
40 cd06183 cyt_b5_reduct_like Cyt 99.9 2.9E-20 6.3E-25 183.4 18.6 169 341-535 2-192 (234)
41 PRK06222 ferredoxin-NADP(+) re 99.8 5E-20 1.1E-24 187.4 18.0 163 340-538 2-177 (281)
42 cd06219 DHOD_e_trans_like1 FAD 99.8 6.1E-20 1.3E-24 183.4 17.8 163 341-539 2-177 (248)
43 PTZ00274 cytochrome b5 reducta 99.8 1.3E-19 2.9E-24 187.1 20.9 174 334-533 49-252 (325)
44 cd06208 CYPOR_like_FNR These f 99.8 9.4E-20 2E-24 185.9 19.5 172 338-535 9-227 (286)
45 cd06218 DHOD_e_trans FAD/NAD b 99.8 6.3E-20 1.4E-24 183.1 17.6 165 342-539 1-178 (246)
46 cd06192 DHOD_e_trans_like FAD/ 99.8 7.4E-20 1.6E-24 182.2 17.7 157 342-531 1-169 (243)
47 TIGR02911 sulfite_red_B sulfit 99.8 1.2E-19 2.7E-24 182.6 18.6 162 339-534 7-182 (261)
48 COG1018 Hmp Flavodoxin reducta 99.8 3E-19 6.5E-24 179.3 19.9 146 336-505 4-166 (266)
49 PRK05464 Na(+)-translocating N 99.8 2E-19 4.3E-24 192.3 18.5 171 338-535 134-363 (409)
50 PF08022 FAD_binding_8: FAD-bi 99.8 4.2E-22 9.1E-27 172.6 -1.8 99 339-452 3-104 (105)
51 cd06220 DHOD_e_trans_like2 FAD 99.8 3E-19 6.4E-24 176.8 17.5 153 340-536 1-163 (233)
52 PTZ00319 NADH-cytochrome B5 re 99.8 2.9E-19 6.3E-24 183.3 17.5 174 334-534 30-252 (300)
53 PLN03115 ferredoxin--NADP(+) r 99.8 5.5E-19 1.2E-23 184.7 19.1 172 339-536 92-308 (367)
54 TIGR01941 nqrF NADH:ubiquinone 99.8 3.5E-19 7.5E-24 190.3 17.2 170 338-534 130-358 (405)
55 COG0543 UbiB 2-polyprenylpheno 99.8 1.2E-18 2.6E-23 174.3 18.2 165 339-538 9-190 (252)
56 PRK05713 hypothetical protein; 99.8 5.8E-19 1.3E-23 182.3 16.0 173 338-536 92-294 (312)
57 PRK05802 hypothetical protein; 99.8 9.6E-19 2.1E-23 180.7 17.0 140 338-500 65-223 (320)
58 cd06200 SiR_like1 Cytochrome p 99.8 4.3E-18 9.4E-23 169.8 18.3 132 351-506 17-168 (245)
59 cd06182 CYPOR_like NADPH cytoc 99.8 8.3E-18 1.8E-22 169.8 17.9 153 350-533 15-201 (267)
60 PLN02252 nitrate reductase [NA 99.8 1E-17 2.2E-22 192.4 20.8 174 335-534 632-846 (888)
61 TIGR03224 benzo_boxA benzoyl-C 99.8 1.2E-17 2.7E-22 178.1 18.7 168 338-535 143-351 (411)
62 KOG0534 NADH-cytochrome b-5 re 99.8 2.6E-17 5.5E-22 164.7 17.4 173 336-534 50-243 (286)
63 cd06185 PDR_like Phthalate dio 99.7 3.2E-17 7E-22 159.4 16.9 131 344-500 2-149 (211)
64 PRK12778 putative bifunctional 99.7 4E-17 8.6E-22 187.4 18.6 162 340-537 2-176 (752)
65 cd06201 SiR_like2 Cytochrome p 99.7 1.2E-16 2.5E-21 163.3 19.6 147 336-508 44-214 (289)
66 PRK12779 putative bifunctional 99.7 2.8E-16 6.2E-21 182.6 20.9 173 336-538 647-838 (944)
67 PRK12775 putative trifunctiona 99.7 5.5E-16 1.2E-20 181.6 18.7 164 340-538 2-178 (1006)
68 PTZ00306 NADH-dependent fumara 99.7 2.7E-15 5.8E-20 178.9 20.0 173 336-534 913-1120(1167)
69 cd06193 siderophore_interactin 99.6 4.9E-15 1.1E-19 146.8 12.8 119 342-484 1-145 (235)
70 PF01794 Ferric_reduct: Ferric 99.4 2.1E-13 4.5E-18 121.2 7.7 117 147-295 7-124 (125)
71 PF00970 FAD_binding_6: Oxidor 99.4 2.1E-12 4.6E-17 110.3 9.7 92 339-453 1-98 (99)
72 COG2871 NqrF Na+-transporting 99.3 9E-12 2E-16 121.7 10.7 179 339-534 136-363 (410)
73 PRK06567 putative bifunctional 99.3 4.7E-11 1E-15 136.4 16.3 119 339-484 792-915 (1028)
74 cd06199 SiR Cytochrome p450- l 99.3 1.1E-11 2.4E-16 130.5 10.4 120 362-507 129-274 (360)
75 TIGR01931 cysJ sulfite reducta 99.3 1.2E-11 2.5E-16 138.3 9.9 139 363-534 367-532 (597)
76 cd06203 methionine_synthase_re 99.2 1.9E-10 4E-15 122.9 13.6 134 380-535 171-333 (398)
77 cd06207 CyPoR_like NADPH cytoc 99.2 1.9E-10 4.1E-15 122.2 12.8 106 380-508 161-296 (382)
78 cd06206 bifunctional_CYPOR The 99.1 3.3E-10 7.1E-15 120.5 10.4 135 365-533 147-315 (384)
79 PRK06214 sulfite reductase; Pr 99.0 1.6E-09 3.5E-14 118.6 13.7 107 379-508 312-445 (530)
80 PRK10953 cysJ sulfite reductas 99.0 8.2E-10 1.8E-14 123.1 10.1 117 363-505 370-512 (600)
81 cd06204 CYPOR NADPH cytochrome 98.9 1.1E-08 2.4E-13 109.9 13.1 126 380-508 175-331 (416)
82 cd06202 Nitric_oxide_synthase 98.9 1.9E-08 4.1E-13 107.7 12.9 126 381-535 175-338 (406)
83 KOG3378 Globins and related he 98.8 4.2E-08 9.2E-13 95.7 10.5 135 335-489 147-292 (385)
84 PF00175 NAD_binding_1: Oxidor 98.5 2.1E-07 4.5E-12 80.4 6.1 72 464-538 1-85 (109)
85 PF08030 NAD_binding_6: Ferric 98.1 5.1E-06 1.1E-10 76.6 5.6 58 459-516 1-80 (156)
86 COG0369 CysJ Sulfite reductase 97.9 0.0001 2.2E-09 81.8 12.1 111 381-505 371-499 (587)
87 KOG1158 NADP/FAD dependent oxi 97.5 0.00021 4.6E-09 79.5 7.9 49 457-505 489-555 (645)
88 PRK05419 putative sulfite oxid 97.5 0.0005 1.1E-08 66.7 9.4 127 174-333 68-194 (205)
89 COG2717 Predicted membrane pro 96.9 0.0043 9.3E-08 59.7 8.3 123 178-333 72-194 (209)
90 PF00036 EF-hand_1: EF hand; 96.8 0.0013 2.9E-08 43.0 3.0 26 27-52 3-28 (29)
91 KOG1159 NADP-dependent flavopr 96.2 0.011 2.4E-07 63.0 7.0 95 370-483 358-456 (574)
92 COG2375 ViuB Siderophore-inter 96.1 0.11 2.3E-06 52.2 13.0 126 336-485 16-169 (265)
93 PF13202 EF-hand_5: EF hand; P 95.7 0.014 3.1E-07 36.7 3.1 24 27-50 2-25 (25)
94 KOG0034 Ca2+/calmodulin-depend 95.5 0.017 3.7E-07 55.2 4.6 39 18-56 141-179 (187)
95 PF08021 FAD_binding_9: Sidero 95.3 0.17 3.7E-06 44.6 10.0 89 341-452 1-117 (117)
96 PF13499 EF-hand_7: EF-hand do 95.1 0.033 7.1E-07 43.3 4.3 32 19-50 35-66 (66)
97 PF13405 EF-hand_6: EF-hand do 94.9 0.028 6.2E-07 37.0 2.9 26 27-52 3-28 (31)
98 PF13833 EF-hand_8: EF-hand do 94.1 0.066 1.4E-06 39.9 3.7 27 26-52 27-53 (54)
99 smart00054 EFh EF-hand, calciu 92.5 0.17 3.6E-06 31.0 3.2 26 27-52 3-28 (29)
100 PF14788 EF-hand_10: EF hand; 91.9 0.21 4.5E-06 37.1 3.4 29 23-51 20-48 (51)
101 KOG0038 Ca2+-binding kinase in 90.4 0.4 8.6E-06 43.4 4.4 41 16-56 141-181 (189)
102 cd05026 S-100Z S-100Z: S-100Z 89.7 0.38 8.2E-06 40.5 3.5 30 23-52 52-81 (93)
103 KOG4065 Uncharacterized conser 88.2 0.5 1.1E-05 41.0 3.2 31 18-48 111-141 (144)
104 PF13499 EF-hand_7: EF-hand do 88.1 0.5 1.1E-05 36.5 3.0 28 27-54 3-30 (66)
105 cd05024 S-100A10 S-100A10: A s 87.7 0.67 1.4E-05 38.9 3.6 30 23-52 47-76 (91)
106 cd05029 S-100A6 S-100A6: S-100 87.4 0.67 1.5E-05 38.6 3.5 29 24-52 51-79 (88)
107 cd05022 S-100A13 S-100A13: S-1 87.3 0.66 1.4E-05 38.8 3.5 29 24-52 47-75 (89)
108 cd05030 calgranulins Calgranul 86.6 0.81 1.8E-05 38.0 3.6 30 23-52 50-79 (88)
109 cd05031 S-100A10_like S-100A10 85.4 0.95 2.1E-05 38.0 3.5 30 23-52 50-79 (94)
110 cd05023 S-100A11 S-100A11: S-1 85.3 1.1 2.3E-05 37.5 3.7 29 24-52 52-80 (89)
111 cd05027 S-100B S-100B: S-100B 85.3 1 2.2E-05 37.5 3.5 29 24-52 51-79 (88)
112 cd05025 S-100A1 S-100A1: S-100 84.0 1.2 2.6E-05 37.2 3.5 30 23-52 51-80 (92)
113 cd00213 S-100 S-100: S-100 dom 83.7 1.2 2.6E-05 36.7 3.4 35 17-52 2-38 (88)
114 cd00051 EFh EF-hand, calcium b 83.4 1.6 3.4E-05 31.9 3.6 28 23-50 35-62 (63)
115 cd00052 EH Eps15 homology doma 83.3 1.5 3.2E-05 33.6 3.5 30 23-52 32-61 (67)
116 cd05025 S-100A1 S-100A1: S-100 82.3 1.7 3.7E-05 36.2 3.8 33 20-52 5-39 (92)
117 cd00213 S-100 S-100: S-100 dom 81.5 1.7 3.7E-05 35.7 3.5 30 23-52 50-79 (88)
118 smart00027 EH Eps15 homology d 80.2 1.6 3.4E-05 36.7 2.8 33 19-52 6-38 (96)
119 KOG0036 Predicted mitochondria 78.5 4.5 9.8E-05 42.8 6.0 82 16-104 6-87 (463)
120 COG5126 FRQ1 Ca2+-binding prot 78.2 2.5 5.3E-05 39.4 3.7 26 27-52 95-120 (160)
121 cd00252 SPARC_EC SPARC_EC; ext 77.8 2.6 5.7E-05 37.1 3.6 26 25-50 49-74 (116)
122 cd00051 EFh EF-hand, calcium b 76.8 2.7 5.8E-05 30.6 3.0 27 27-53 3-29 (63)
123 cd00052 EH Eps15 homology doma 76.5 2.4 5.3E-05 32.3 2.7 25 28-52 3-27 (67)
124 PTZ00183 centrin; Provisional 75.7 3.3 7.1E-05 37.4 3.8 30 23-52 89-118 (158)
125 smart00027 EH Eps15 homology d 74.9 3.5 7.6E-05 34.6 3.5 27 26-52 46-72 (96)
126 KOG0041 Predicted Ca2+-binding 72.8 3.3 7.2E-05 39.6 3.0 36 17-53 93-128 (244)
127 KOG0027 Calmodulin and related 71.9 4 8.6E-05 37.3 3.4 31 23-53 84-114 (151)
128 cd05022 S-100A13 S-100A13: S-1 69.8 6.2 0.00013 32.9 3.8 31 22-52 6-37 (89)
129 KOG0044 Ca2+ sensor (EF-Hand s 68.7 4.8 0.0001 38.7 3.2 37 18-54 141-177 (193)
130 PTZ00183 centrin; Provisional 68.2 6.9 0.00015 35.3 4.1 35 17-52 11-45 (158)
131 PTZ00184 calmodulin; Provision 67.8 6.9 0.00015 34.7 4.0 33 19-52 7-39 (149)
132 cd05026 S-100Z S-100Z: S-100Z 66.0 7.3 0.00016 32.6 3.5 24 29-52 15-40 (93)
133 KOG0044 Ca2+ sensor (EF-Hand s 65.3 6.5 0.00014 37.8 3.4 34 17-50 57-90 (193)
134 PTZ00184 calmodulin; Provision 65.0 7.6 0.00017 34.4 3.7 28 23-50 83-110 (149)
135 cd05031 S-100A10_like S-100A10 61.7 10 0.00022 31.7 3.6 30 23-52 7-38 (94)
136 cd05027 S-100B S-100B: S-100B 58.8 13 0.00029 30.8 3.7 27 26-52 10-38 (88)
137 KOG0027 Calmodulin and related 58.1 14 0.00029 33.7 4.1 30 23-52 120-149 (151)
138 PF14658 EF-hand_9: EF-hand do 58.1 15 0.00033 28.9 3.7 32 17-52 32-64 (66)
139 cd05023 S-100A11 S-100A11: S-1 51.3 22 0.00048 29.5 3.9 36 17-53 3-40 (89)
140 PLN02964 phosphatidylserine de 50.3 16 0.00034 41.6 3.7 35 18-52 173-207 (644)
141 cd00252 SPARC_EC SPARC_EC; ext 49.6 19 0.00042 31.6 3.4 27 26-52 82-108 (116)
142 PLN02964 phosphatidylserine de 46.2 22 0.00048 40.5 4.1 25 16-41 136-160 (644)
143 KOG0039 Ferric reductase, NADH 45.5 16 0.00035 41.8 3.0 46 152-204 209-255 (646)
144 PF12763 EF-hand_4: Cytoskelet 40.4 16 0.00034 31.5 1.4 27 24-50 43-69 (104)
145 PF06183 DinI: DinI-like famil 40.1 24 0.00051 27.7 2.2 30 5-34 26-61 (65)
146 COG5126 FRQ1 Ca2+-binding prot 39.4 35 0.00076 31.8 3.6 26 26-51 130-155 (160)
147 PF14358 DUF4405: Domain of un 37.2 34 0.00074 26.3 2.8 25 177-201 39-63 (64)
148 cd05029 S-100A6 S-100A6: S-100 37.0 49 0.0011 27.4 3.8 36 16-52 3-40 (88)
149 PF00667 FAD_binding_1: FAD bi 36.0 76 0.0016 30.8 5.7 41 337-377 8-54 (219)
150 PF01794 Ferric_reduct: Ferric 32.4 94 0.002 26.6 5.2 25 277-301 29-54 (125)
151 KOG0036 Predicted mitochondria 30.2 52 0.0011 35.2 3.5 26 27-52 85-110 (463)
152 COG2976 Uncharacterized protei 30.1 54 0.0012 31.7 3.3 36 87-124 11-46 (207)
153 PRK10639 formate dehydrogenase 27.7 2.9E+02 0.0063 26.7 8.2 23 278-300 146-169 (211)
154 KOG0037 Ca2+-binding protein, 27.0 56 0.0012 31.9 2.9 26 24-49 94-119 (221)
155 PLN02631 ferric-chelate reduct 25.3 87 0.0019 36.2 4.5 58 235-301 149-209 (699)
156 PF01292 Ni_hydr_CYTB: Prokary 24.6 5.4E+02 0.012 23.5 10.3 22 180-201 43-64 (182)
157 PF00033 Cytochrom_B_N: Cytoch 24.6 3.7E+02 0.0079 24.6 8.1 27 177-203 44-70 (188)
158 PLN02292 ferric-chelate reduct 23.3 1E+02 0.0022 35.7 4.6 57 236-301 167-226 (702)
159 PF00667 FAD_binding_1: FAD bi 23.0 76 0.0016 30.8 3.1 26 380-405 176-203 (219)
160 PF13706 PepSY_TM_3: PepSY-ass 22.7 97 0.0021 21.2 2.7 17 180-196 5-21 (37)
161 PRK10597 DNA damage-inducible 21.9 89 0.0019 25.7 2.7 30 5-34 40-75 (81)
162 KOG0028 Ca2+-binding protein ( 21.9 1.1E+02 0.0024 28.5 3.6 29 24-52 33-61 (172)
163 cd05030 calgranulins Calgranul 20.8 1.4E+02 0.0031 24.4 3.9 35 18-52 3-38 (88)
164 PRK12446 undecaprenyldiphospho 20.4 88 0.0019 32.8 3.2 25 460-484 2-28 (352)
165 PF14145 YrhK: YrhK-like prote 20.4 1.6E+02 0.0034 22.6 3.7 53 278-334 4-56 (59)
No 1
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.1e-77 Score=660.97 Aligned_cols=455 Identities=52% Similarity=0.892 Sum_probs=395.7
Q ss_pred ceeeeeeeecccccccchhhHHHHHHHHHHhcCCCCCCceeHHHHHHHHhcCccccccCCCCc-chhHHHhhhcCCCCCC
Q 008948 2 YLQIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVKGGESR-NLSHMLSQKLKPTQFD 80 (548)
Q Consensus 2 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (548)
++|+|+.|+++|.++.+++|+++|++.+||++|+++.||+++++++.+|.+.+.......... +++....+.+++.. +
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 117 (646)
T KOG0039|consen 39 VRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQIPTLLFAILLSFANLSLLLSQPLKPTR-R 117 (646)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhchHHHHHHHHHHHHHHhhhcccccccc-c
Confidence 467889999999999999999999999999999999999999999999998875532111111 23344555554433 3
Q ss_pred CccchhhhhhhHhhhcCceeeehhHHHHHHHHHHHHHHhhccccchhhhhhccceeecccchhhhhhhhHHHHHhhhhhh
Q 008948 81 NPIRRCCDSTMYFLLDNWQRVWVMAQWIGVMAGLFTYKYIQYKNRAAFEVMGHCVCMAKGAAETLKFNMALILLPVCRNT 160 (548)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~i~~~lf~~~~~~y~~~~~~~~~g~~~~~arg~a~~l~~n~~lill~~~Rn~ 160 (548)
.+..+..++...+++++|++.+++++|+++++++|.|++.+|...+.+++||.+++.++++|+++++||+++++|+|||.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~~~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~ 197 (646)
T KOG0039|consen 118 KPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFTWRFLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRNR 197 (646)
T ss_pred cccchheeeeeeeeccceEeeeeehHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHHH
Confidence 45556677778899999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred hhhccccccccccccCcchhhHHHHHHHHHHHHHHHHHhhhhccccceeeecCcccc-CCCCcccCCCCCccccccccch
Q 008948 161 ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKY-EPMEPYFGDQPKNYWHFVKSVE 239 (548)
Q Consensus 161 it~Lr~~~~l~~~ip~d~~~~fHk~ig~~~~~~~~iH~~~hl~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 239 (548)
++|||..+.+...+|+|+++.|||.+|..+..++.+|..+|.+|.++.++++....+ ......++ ++.|+++..+..
T Consensus 198 ~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H~w~~~~~~~~~~ih~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 275 (646)
T KOG0039|consen 198 LTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLHIWLHLVNFFPFLVHGLEYTISLASELFFL--PKTYKWLLLGVV 275 (646)
T ss_pred HHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc--chhhhhhhcCCC
Confidence 999995555778899999999999999999999999999999999988877643222 11222232 556788899999
Q ss_pred hHHHHHHHHHHHHHHHhcchhhhhccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhccccccccccccceeeehhhH
Q 008948 240 GVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAI 319 (548)
Q Consensus 240 g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~~ll~~H~~~~~l~~~w~~~~~w~~~~~ 319 (548)
++||++++++|.+|+++|++++||+ .||+|||+||+++++|+++++||...+.+ .+|+|+++
T Consensus 276 ~~tGv~~~i~~~im~v~s~~~fRR~------------~~e~F~ytH~l~~v~~illi~hg~~~~~~------~~w~~~~~ 337 (646)
T KOG0039|consen 276 GLTGVILLILMLIMFVLSLPFFRRR------------FYEAFWYTHHLYIVFYILLIIHGGFRLLG------TTWMYIAV 337 (646)
T ss_pred cchhHHHHHHHHHHHHHhhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcccccc------cchhHHHH
Confidence 9999999999999999999999999 79999999999999999999999876543 68999999
Q ss_pred HHHHHHHHHHHHHhhcccccEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCCCCeEEE
Q 008948 320 PICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSV 399 (548)
Q Consensus 320 ~~~ly~~dr~~R~~r~~~~~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~~l~l 399 (548)
|+++|++||++|..|+ ..+++++++..+|+|++++++++|++|+|+||||++|+||.++.+|||||||+|+|+||++++
T Consensus 338 p~~ly~~dR~~r~~r~-~~~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsv 416 (646)
T KOG0039|consen 338 PVLLYILDRILRFLRS-QKNVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSV 416 (646)
T ss_pred HHHHHHHHHHHHHHHH-hcCceEEEEEEcCCCeEEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCCCCCEEEE
Confidence 9999999999999998 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHH
Q 008948 400 HIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVK 479 (548)
Q Consensus 400 ~Ir~~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~ 479 (548)
|||++||||++|++.++..+++++.+. ....+++.||||||.+.+++.++|++++||||+|+||++|+++
T Consensus 417 hIk~~g~wT~~L~~~~~~~~~~~~~~~----------~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~ 486 (646)
T KOG0039|consen 417 HIKALGDWTEKLRNAFSEVSQPPESDK----------SYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILK 486 (646)
T ss_pred EEEecCcHHHHHHHHHhhhcccccccc----------cccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHH
Confidence 999999999999999875333211110 0125899999999999999999999999999999999999999
Q ss_pred HHHHhcccC
Q 008948 480 DIVNNMKAI 488 (548)
Q Consensus 480 ~l~~~~~~~ 488 (548)
+++++.+..
T Consensus 487 ~l~~~~~~~ 495 (646)
T KOG0039|consen 487 DLLNKISLG 495 (646)
T ss_pred HHHhhccCC
Confidence 999886544
No 2
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=8.4e-50 Score=441.28 Aligned_cols=345 Identities=23% Similarity=0.397 Sum_probs=265.1
Q ss_pred HHHHHHHHHHHHHHhhccccchhh----------hhhccceeecccchhhhhhhhHHHHHhhhhhh-hhhcccccccccc
Q 008948 105 AQWIGVMAGLFTYKYIQYKNRAAF----------EVMGHCVCMAKGAAETLKFNMALILLPVCRNT-ITWLRNKTKLSGV 173 (548)
Q Consensus 105 ~~~~~i~~~lf~~~~~~y~~~~~~----------~~~g~~~~~arg~a~~l~~n~~lill~~~Rn~-it~Lr~~~~l~~~ 173 (548)
.+++++-+++++|.+..|-..+.- ........++..+|-....+++++++|++||+ +.|++ +
T Consensus 110 ~~~~~~f~~~~~w~~~~y~~~~~~~~~~~~~~~~~~~~~l~~ig~RtGila~~~lpll~L~a~Rnn~L~~lt-------G 182 (699)
T PLN02631 110 LTFSLLFVALLAWSLYNYLYLSYHVHLHNDDNAKIWQAKFRAFGLRIGYVGHICWAFLFFPVTRASTILPLV-------G 182 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH-------C
Confidence 466777777778877666321110 00011123566677777789999999999998 78997 5
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHhhhhccccceeeecCccccCCCCcccCCCCCccccccccchhHHHHHHHHHHHHH
Q 008948 174 VPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIA 253 (548)
Q Consensus 174 ip~d~~~~fHk~ig~~~~~~~~iH~~~hl~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i~ 253 (548)
++||+++.||||+|+++++++++|+++++. .+ ...+.+. ..+. ....| ..+++|+++++++++|
T Consensus 183 ~s~e~~i~yHRWlGri~~~la~iH~i~y~i-~~-----~~~~~~~---~~~~-w~~~~------~~~~~GviA~v~~~lm 246 (699)
T PLN02631 183 LTSESSIKYHIWLGHVSNFLFLVHTVVFLI-YW-----AMINKLM---ETFA-WNPTY------VPNLAGTIAMVIGIAM 246 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----Hhhchhh---hhhh-ccccc------chHHHHHHHHHHHHHH
Confidence 899999999999999999999999999973 21 1011110 0000 00111 2357899999999999
Q ss_pred HHhcchhhhhccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhccccccccccccceeeeh-hhHHHHHHHHHHHHHH
Q 008948 254 FTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMY-LAIPICLYATERLIRA 332 (548)
Q Consensus 254 ~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~~ll~~H~~~~~l~~~w~~~~~w~~-~~~~~~ly~~dr~~R~ 332 (548)
+++|++++||+ +||+|+++|++++++++++++|.. ..|.+ +.+++++|++||++|.
T Consensus 247 ~~~Sl~~~RRr------------~YE~F~~~Hillaifiv~~~~H~g-----------~~w~~~~~~~ialw~~DR~lR~ 303 (699)
T PLN02631 247 WVTSLPSFRRK------------KFELFFYTHHLYGLYIVFYVIHVG-----------DSWFCMILPNIFLFFIDRYLRF 303 (699)
T ss_pred HHhccHHHHhh------------hhhHHHHHHHHHHHHHHheEEecC-----------CchHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 899999999999987667788853 13443 3455789999999999
Q ss_pred hhcccccEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCC--CCeEEEEEEEcCCcchH
Q 008948 333 LRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTLGDWTRQ 410 (548)
Q Consensus 333 ~r~~~~~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~--~~~l~l~Ir~~g~~T~~ 410 (548)
+|+. ...++++++.+++|++++++++|++++|+||||++|++|..+.+|+|||||+|+|+ ++.++++||+.|+||++
T Consensus 304 ~r~~-~~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~ 382 (699)
T PLN02631 304 LQST-KRSRLVSARILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQK 382 (699)
T ss_pred HHHh-ceEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHH
Confidence 9876 45788899999999999999988889999999999999999899999999999984 57899999999999999
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccC--
Q 008948 411 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-- 488 (548)
Q Consensus 411 L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~-- 488 (548)
|++..++ .| .+.++.+|||||.+..+..+++++|+||||+||||++|++++++++..+.
T Consensus 383 L~~~l~~------~g-------------~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~ 443 (699)
T PLN02631 383 LYTHLSS------SI-------------DSLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPST 443 (699)
T ss_pred HHHhhhc------CC-------------CeeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhccccccc
Confidence 9887632 11 13689999999987656677899999999999999999999998753211
Q ss_pred ---c------------HHHHHHHHh-------hhhcCCCEEEEEecCCC
Q 008948 489 ---E------------EEEENDLEN-------GRDTGVNTTIIIIDNNY 515 (548)
Q Consensus 489 ---~------------~~~~~eL~~-------l~~~~~~~~v~vt~~~~ 515 (548)
+ ..+.||++. +++.+.++++++|+++.
T Consensus 444 ~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 444 KLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISRLNLRIEAYITREDK 492 (699)
T ss_pred CCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhcCceEEEEEEcCCCC
Confidence 1 136688875 44455568888998644
No 3
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=3.2e-48 Score=429.64 Aligned_cols=318 Identities=22% Similarity=0.373 Sum_probs=250.5
Q ss_pred ecccchhhhhhhhHHHHHhhhhhh-hhhccccccccccccCcchhhHHHHHHHHHHHHHHHHHhhhhccccceeeecCcc
Q 008948 137 MAKGAAETLKFNMALILLPVCRNT-ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEE 215 (548)
Q Consensus 137 ~arg~a~~l~~n~~lill~~~Rn~-it~Lr~~~~l~~~ip~d~~~~fHk~ig~~~~~~~~iH~~~hl~~~f~~~~~~~~~ 215 (548)
+|..+|-....+++++++|++||+ +.|++ ++|||+++.||||+|+++++++++|++++++. + ....
T Consensus 169 vg~R~Gila~~~lpll~l~~~Rnn~L~~lt-------G~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~-~-----~~~~ 235 (702)
T PLN02292 169 IAVRLGLVGNICLAFLFYPVARGSSLLAAV-------GLTSESSIKYHIWLGHLVMTLFTSHGLCYIIY-W-----ISMN 235 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HhcC
Confidence 566666667789999999999998 78887 59999999999999999999999999999741 1 1111
Q ss_pred ccCCCCcccCCCCCccccccccchhHHHHHHHHHHHHHHHhcchhhhhccCCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 008948 216 KYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLL 295 (548)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~~ll 295 (548)
.+..+ . . +...+...++|+++++++.+|+++|.+++||+ +||.|+++|++++++++++
T Consensus 236 ~~~~~---~------~-w~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~------------~YE~F~~~HiL~~v~~v~~ 293 (702)
T PLN02292 236 QVSQM---L------E-WDRTGVSNLAGEIALVAGLVMWATTYPKIRRR------------FFEVFFYTHYLYIVFMLFF 293 (702)
T ss_pred chhhh---h------h-ccccchHHHHHHHHHHHHHHHHHHhhHHHHhc------------ccHhHHHHHHHHHHHHeee
Confidence 11111 0 1 11233456899999999999999999999998 8999999999998877778
Q ss_pred HhhccccccccccccceeeehhhHHHHHHHHHHHHHHhhcccccEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEe
Q 008948 296 IVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNC 375 (548)
Q Consensus 296 ~~H~~~~~l~~~w~~~~~w~~~~~~~~ly~~dr~~R~~r~~~~~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~ 375 (548)
++|.... ...+..+++++|++||++|.+|.+ .++++++++.+++|++++++++|+.++++||||+++++
T Consensus 294 ~~H~~~~----------~~~~~~~~i~l~~~DR~lR~~r~~-~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL~~ 362 (702)
T PLN02292 294 VFHVGIS----------FALISFPGFYIFLVDRFLRFLQSR-NNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFVNI 362 (702)
T ss_pred ehhhhhH----------HHHHHHHHHHHHHHHHHHHHHHhh-cceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEEEE
Confidence 8996421 112334456789999999999875 78899999999999999999999889999999999999
Q ss_pred cCCCCCeeeeeecccCCC--CCeEEEEEEEcCCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCC
Q 008948 376 AAVSPFEWHPFSITSAPD--DDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPA 453 (548)
Q Consensus 376 p~~~~~e~hPFSIaS~p~--~~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~ 453 (548)
|..+.+++|||||+|+|+ +++++++||..|+||++|++.++. |+ .....++.++||||.+.
T Consensus 363 P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~-------gd----------~i~~~~V~VeGPYG~~~ 425 (702)
T PLN02292 363 PSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSS-------SD----------QIDRLAVSVEGPYGPAS 425 (702)
T ss_pred ccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCC-------CC----------ccccceEEEECCccCCc
Confidence 998889999999999873 678999999999999999887632 21 01135899999999987
Q ss_pred CCCCCCCeEEEEEcccCHHHHHHHHHHHHHhccc-----Cc-----------H-----HHHHHHH---hhh-hcCCCEEE
Q 008948 454 QDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-----IE-----------E-----EEENDLE---NGR-DTGVNTTI 508 (548)
Q Consensus 454 ~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~-----~~-----------~-----~~~~eL~---~l~-~~~~~~~v 508 (548)
.+..+++++++||||+||||++|++++++++..+ ++ + ++.+|++ +++ +.+.++.+
T Consensus 426 ~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~i 505 (702)
T PLN02292 426 TDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSFIDIQIKA 505 (702)
T ss_pred cccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEE
Confidence 6666789999999999999999999999875321 11 1 2334442 332 34555889
Q ss_pred EEecCCCCC
Q 008948 509 IIIDNNYEP 517 (548)
Q Consensus 509 ~vt~~~~~~ 517 (548)
++|++++++
T Consensus 506 yvTr~~~~~ 514 (702)
T PLN02292 506 FVTREKEAG 514 (702)
T ss_pred EEeCCCCCC
Confidence 999887665
No 4
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=9e-47 Score=419.15 Aligned_cols=323 Identities=24% Similarity=0.457 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhh-----------ccceeecccchhhhhhhhHHHHHhhhhhh-hhhccccccccc
Q 008948 105 AQWIGVMAGLFTYKYIQYKNRAAFEVM-----------GHCVCMAKGAAETLKFNMALILLPVCRNT-ITWLRNKTKLSG 172 (548)
Q Consensus 105 ~~~~~i~~~lf~~~~~~y~~~~~~~~~-----------g~~~~~arg~a~~l~~n~~lill~~~Rn~-it~Lr~~~~l~~ 172 (548)
.+++.+-+++.+|.++.|-.++.-.++ .....++++.|.....+++++++|++||+ +.|+.
T Consensus 112 ~~~~~~f~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~R~G~la~~~Lpll~llv~Rnn~l~~lt------- 184 (722)
T PLN02844 112 ILAVLLFFLFLAWTFYARISNDFKKLMPVKSLNLNLWQLKYLRVATRFGLLAEACLALLLLPVLRGLALFRLL------- 184 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhh-------
Confidence 355666666777777666432211111 11234566776667789999999999997 56665
Q ss_pred cccCcchhhHHHHHHHHHHHHHHHHHhhhhccccceeeecCccccCCCCcccCCCCCccccc-cccchhHHHHHHHHHHH
Q 008948 173 VVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHF-VKSVEGVTGIVMVVLMA 251 (548)
Q Consensus 173 ~ip~d~~~~fHk~ig~~~~~~~~iH~~~hl~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~tGii~lv~l~ 251 (548)
++|||+++.||||+|+++++++++|+++|+. .+ ...+... ..++.+ ..+...++|+++++++.
T Consensus 185 Gis~e~~i~fHrWlGr~~~llallH~i~~~i-~w-----~~~~~~~----------~~~~~w~~~~~~~~~G~IAlv~l~ 248 (722)
T PLN02844 185 GIQFEASVRYHVWLGTSMIFFATVHGASTLF-IW-----GISHHIQ----------DEIWKWQKTGRIYLAGEIALVTGL 248 (722)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----Hhhcchh----------hhhhhhccCcchhhhHHHHHHHHH
Confidence 5899999999999999999999999998873 11 1001000 001111 12233578999999999
Q ss_pred HHHHhcchhhhhccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhccccccccccccceeeehhhHHHHHHHHHHHHH
Q 008948 252 IAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIR 331 (548)
Q Consensus 252 i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~~ll~~H~~~~~l~~~w~~~~~w~~~~~~~~ly~~dr~~R 331 (548)
+|+++|++++||+ +||+||++|++++++++++++|+.. ..+.|+.+++++|++||++|
T Consensus 249 iL~itSl~~iRR~------------~YElF~~~H~L~ivflv~~~~H~~~----------~~~~~v~~~i~L~~~DRllR 306 (722)
T PLN02844 249 VIWITSLPQIRRK------------RFEIFYYTHHLYIVFLIFFLFHAGD----------RHFYMVFPGIFLFGLDKLLR 306 (722)
T ss_pred HHHHHhhHHHHhh------------hhHHHHHHHHHHHHHHHhhhHhhcC----------cchhhhHHHHHHHHHHHHhh
Confidence 9999999999998 8999999999998888888999852 11235556789999999999
Q ss_pred HhhcccccEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCC--CCCeEEEEEEEcCCcch
Q 008948 332 ALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAP--DDDYLSVHIRTLGDWTR 409 (548)
Q Consensus 332 ~~r~~~~~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p--~~~~l~l~Ir~~g~~T~ 409 (548)
.+++. ....+++++.++++++++++++|+.++|+||||+++++|..++++||||||+|+| +++.++++||..|+||+
T Consensus 307 ~~~s~-~~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~ 385 (722)
T PLN02844 307 IVQSR-PETCILSARLFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTN 385 (722)
T ss_pred eEEEe-eeEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchH
Confidence 88765 3445667788899999999999988999999999999999999999999999987 46789999999999999
Q ss_pred HHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhc
Q 008948 410 QLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM 485 (548)
Q Consensus 410 ~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~ 485 (548)
+|.+..+...+ +|. + .....++.|+||||.+..+..+++++++||||+||||++|+++++.++.
T Consensus 386 ~L~~~i~~~l~---~g~-~--------~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~ 449 (722)
T PLN02844 386 SLYNKIQAELD---SET-N--------QMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQS 449 (722)
T ss_pred HHHHHHHhhcc---CCC-C--------cccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhcc
Confidence 99887643211 110 0 0012589999999998766667899999999999999999999998753
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-33 Score=283.03 Aligned_cols=311 Identities=20% Similarity=0.297 Sum_probs=210.4
Q ss_pred hhHHHHHhhhhhhhhhccccccccccccCcchhhHHHHHHHHHHHHHHHHHhhhhccccceeeecCccccC--CCCcccC
Q 008948 148 NMALILLPVCRNTITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYE--PMEPYFG 225 (548)
Q Consensus 148 n~~lill~~~Rn~it~Lr~~~~l~~~ip~d~~~~fHk~ig~~~~~~~~iH~~~hl~~~f~~~~~~~~~~~~--~~~~~~~ 225 (548)
.|+++++.+.|- .|+... .-+.|+.+.+|||.|..++++.+.|-+.....++ .....-.+. +++..+.
T Consensus 51 ~msl~~~LA~R~--~~iE~~-----~~GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~w---~~~~~l~~k~a~v~~~l~ 120 (438)
T COG4097 51 LMSLIFLLATRL--PLIEAW-----FNGLDKIYRFHKYTSILAILLLLAHNFILFIGNW---LTLQLLNFKPAPVKPSLA 120 (438)
T ss_pred HHHHHHHHHhch--HHHhhh-----hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHcCcc---hhcccccccccccchhhh
Confidence 578888888884 455542 2478999999999999999999999988543221 100000111 0111100
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHHHHhcchhhhhccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhccccccc
Q 008948 226 DQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLT 305 (548)
Q Consensus 226 ~~~~~~~~~~~~~~g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~~ll~~H~~~~~l~ 305 (548)
..|...+. .|-++.-++..+. +.+..|-+ ..||.|.++|.+++++|++..+|.....-.
T Consensus 121 ----~~~~s~~e-lG~~~~yi~~~ll---lV~~l~~~-------------i~Ye~WR~~H~lm~vvYilg~~H~~~l~~~ 179 (438)
T COG4097 121 ----GMWRSAKE-LGEWSAYIFIGLL---LVWRLWLN-------------IGYENWRIAHRLMAVVYILGLLHSYGLLNY 179 (438)
T ss_pred ----hhhHHHHH-HHHHHHHHHHHHH---HHHHHHHh-------------cCchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 01111111 1222222222221 22222222 269999999999999999999998753322
Q ss_pred ccccccee-eehh---hHHHHHHHHHHHHHHhhcccccEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCC-C
Q 008948 306 KKWYKKTT-WMYL---AIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVS-P 380 (548)
Q Consensus 306 ~~w~~~~~-w~~~---~~~~~ly~~dr~~R~~r~~~~~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~-~ 380 (548)
..|..+.. |.-. ++....++.--..+..|++.+.++|+..+..+.++.+++.....++.|+||||.++.|+... .
T Consensus 180 ~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~ 259 (438)
T COG4097 180 LYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEFR 259 (438)
T ss_pred hHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEEecccccc
Confidence 22322222 3211 11112222223334457777888999999999899999888877888999999999998753 4
Q ss_pred CeeeeeecccCCCCCeEEEEEEEcCCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCC
Q 008948 381 FEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYE 460 (548)
Q Consensus 381 ~e~hPFSIaS~p~~~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~ 460 (548)
...|||||+++.+.+.++|.||+.||+|+.|++.++ + |.++.+|||||.+..+- .-+
T Consensus 260 ~~~HPFTIa~s~~~sel~FsIK~LGD~Tk~l~dnLk-------~---------------G~k~~vdGPYG~F~~~~-g~~ 316 (438)
T COG4097 260 MRPHPFTIACSHEGSELRFSIKALGDFTKTLKDNLK-------V---------------GTKLEVDGPYGKFDFER-GLN 316 (438)
T ss_pred CCCCCeeeeeCCCCceEEEEehhhhhhhHHHHHhcc-------C---------------CceEEEecCcceeeccc-CCc
Confidence 568999999998877999999999999999998663 2 58999999999986532 223
Q ss_pred eEEEEEcccCHHHHHHHHHHHHHhcccC------------cHHHHHHHHhhhhcCCCEEEEEec
Q 008948 461 VVLLVGLGIGATPMISIVKDIVNNMKAI------------EEEEENDLENGRDTGVNTTIIIID 512 (548)
Q Consensus 461 ~vvlIagGiGITP~lsil~~l~~~~~~~------------~~~~~~eL~~l~~~~~~~~v~vt~ 512 (548)
+-|+||||||||||+|+++.+..+..+. +..+.+||+++.++.+++.+|+.+
T Consensus 317 ~QVWIAGGIGITPFis~l~~l~~~~s~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHiiD 380 (438)
T COG4097 317 TQVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRNWEEALYAEELRALAQKLPNVVLHIID 380 (438)
T ss_pred ccEEEecCcCcchHHHHHHhhcccccCCceEEEEEecCCchhHHHHHHHHHHhcCCCeEEEEec
Confidence 4899999999999999999998843322 235779999998888899999853
No 6
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.91 E-value=9.4e-24 Score=205.19 Aligned_cols=169 Identities=30% Similarity=0.496 Sum_probs=129.0
Q ss_pred EEEEEec-CCEEEEEEECCCCcccCCCCEEEEEecCC-CCCeeeeeecccCCCC--CeEEEEEEEcCCcchHHHHHhhhc
Q 008948 343 QKVAVYP-GNVLALHMSKPDRFRYKSGQYMFVNCAAV-SPFEWHPFSITSAPDD--DYLSVHIRTLGDWTRQLRTVFSEV 418 (548)
Q Consensus 343 ~~v~~l~-~~v~~l~l~~p~~~~~~pGQyv~L~~p~~-~~~e~hPFSIaS~p~~--~~l~l~Ir~~g~~T~~L~~~~~~~ 418 (548)
++++.++ +++++++++.|..+.++||||++|++|.. +.+++|||||+|.|.+ ++++|+||..+|+|+++.+.+.+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 4567788 99999999998889999999999999988 7889999999999975 899999999966666665554321
Q ss_pred cCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcc----cCc-----
Q 008948 419 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK----AIE----- 489 (548)
Q Consensus 419 ~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~----~~~----- 489 (548)
. + ...+.++.|+||||.+..+..+++++||||||+||||++|++++++++.. ..+
T Consensus 82 ~-----~-----------~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w 145 (210)
T cd06186 82 P-----G-----------GGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVW 145 (210)
T ss_pred c-----C-----------CCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEE
Confidence 0 0 11257999999999987456678999999999999999999999987642 111
Q ss_pred --------HHHHHHHHh---hhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHH
Q 008948 490 --------EEEENDLEN---GRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSI 534 (548)
Q Consensus 490 --------~~~~~eL~~---l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~ 534 (548)
.++.++|+. ++... +..+++|+ ++-||..|..++....
T Consensus 146 ~~r~~~~~~~~~~~l~~~~~~~~~~-~~~i~~T~------v~~CGp~~~~~~~~~~ 194 (210)
T cd06186 146 VVRDREDLEWFLDELRAAQELEVDG-EIEIYVTR------VVVCGPPGLVDDVRNA 194 (210)
T ss_pred EECCHHHhHHHHHHHHhhhhccCCc-eEEEEEee------EEEECchhhccHHHHH
Confidence 257788864 32222 45677775 4467887777765444
No 7
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.91 E-value=1.7e-23 Score=205.65 Aligned_cols=169 Identities=21% Similarity=0.333 Sum_probs=136.7
Q ss_pred EEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEc--CCcchHHHHHhhh
Q 008948 341 SIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTVFSE 417 (548)
Q Consensus 341 ~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~--g~~T~~L~~~~~~ 417 (548)
+|++++.+++++++++++.|..++|+||||+.|.+|.. .+|||||+|.|. ++.++++||.. |.+|+.|.+.++
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~- 77 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELK- 77 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhcc-
Confidence 67889999999999999998888999999999999864 489999999986 68999999998 678988876442
Q ss_pred ccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCcH-------
Q 008948 418 VCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE------- 490 (548)
Q Consensus 418 ~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~------- 490 (548)
+ ++++.|.||||.+..+...+++++|||||+||||++|++++++.+....+.
T Consensus 78 ------~---------------G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r 136 (224)
T cd06189 78 ------E---------------NGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGAR 136 (224)
T ss_pred ------C---------------CCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 2 478999999999875444578999999999999999999999876532221
Q ss_pred -----HHHHHHHhhhhcCCCEEEE-EecCCCCCCCcccCccccCCHHHHHHHh
Q 008948 491 -----EEENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKSILLL 537 (548)
Q Consensus 491 -----~~~~eL~~l~~~~~~~~v~-vt~~~~~~~~~w~g~~G~I~~~~~~~~~ 537 (548)
.+.++|++++++..+..++ ++++++++ |.|..|++++.+.+...
T Consensus 137 ~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~---~~g~~g~v~~~l~~~~~ 186 (224)
T cd06189 137 TEEDLYLDELLEAWAEAHPNFTYVPVLSEPEEG---WQGRTGLVHEAVLEDFP 186 (224)
T ss_pred ChhhccCHHHHHHHHHhCCCeEEEEEeCCCCcC---CccccccHHHHHHhhcc
Confidence 3568999998777775443 45555555 88999999988766543
No 8
>PRK08051 fre FMN reductase; Validated
Probab=99.91 E-value=3.5e-23 Score=204.76 Aligned_cols=172 Identities=18% Similarity=0.253 Sum_probs=135.2
Q ss_pred ccEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCC-CCCeEEEEEEEcCC--cchHHHHH
Q 008948 338 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGD--WTRQLRTV 414 (548)
Q Consensus 338 ~~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p-~~~~l~l~Ir~~g~--~T~~L~~~ 414 (548)
.+++|.+++.++++++.++++.++++.|+||||++|.++.. +.|||||+|.| +++.++|+||..++ .+..+.+.
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPREKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHH
Confidence 46789999999999999999988788999999999999754 57999999999 47889999999765 44444333
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc-----
Q 008948 415 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE----- 489 (548)
Q Consensus 415 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~----- 489 (548)
+ ++ ++++.|+||||.+..+....+++||||||+||||++|+++++.......+
T Consensus 80 l-------~~---------------G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~~~~v~l~~ 137 (232)
T PRK08051 80 I-------LK---------------DGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQGPNRPITLYW 137 (232)
T ss_pred c-------CC---------------CCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCCCCcEEEEE
Confidence 2 12 57999999999987544456789999999999999999999987643322
Q ss_pred -------HHHHHHHHhhhhcCCCEEEE-EecCCCCCCCcccCccccCCHHHHHHHh
Q 008948 490 -------EEEENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKSILLL 537 (548)
Q Consensus 490 -------~~~~~eL~~l~~~~~~~~v~-vt~~~~~~~~~w~g~~G~I~~~~~~~~~ 537 (548)
..+.+||+++++++.+..++ +++.++++ |.|+.|++++++.+...
T Consensus 138 g~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~---~~~~~g~v~~~l~~~~~ 190 (232)
T PRK08051 138 GGREEDHLYDLDELEALALKHPNLHFVPVVEQPEEG---WQGKTGTVLTAVMQDFG 190 (232)
T ss_pred EeccHHHhhhhHHHHHHHHHCCCcEEEEEeCCCCCC---cccceeeehHHHHhhcc
Confidence 13679999998776664443 45555555 88999999988766443
No 9
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.90 E-value=9.8e-23 Score=201.73 Aligned_cols=174 Identities=21% Similarity=0.286 Sum_probs=136.7
Q ss_pred ccEEEEEEEEecCCEEEEEEECCCC------cccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEc--CCcc
Q 008948 338 KAVSIQKVAVYPGNVLALHMSKPDR------FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWT 408 (548)
Q Consensus 338 ~~~~v~~v~~l~~~v~~l~l~~p~~------~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~--g~~T 408 (548)
..++|++++.++++++.++++.|++ +.|+||||+.|.+|+.. ++|||||+|.|. ++.++|+||.. |.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGTD--TRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCCc--cceecccCCCCCCCCEEEEEEEEcCCCccc
Confidence 3578999999999999999998765 78999999999998543 689999999986 68999999987 6678
Q ss_pred hHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccC
Q 008948 409 RQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI 488 (548)
Q Consensus 409 ~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~ 488 (548)
+.|.+.++ + ++++.|.||+|.+..+....++++|||||+||||++|+++++.......
T Consensus 80 ~~l~~~~~-------~---------------Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~ 137 (236)
T cd06210 80 TYLETRAK-------V---------------GQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQ 137 (236)
T ss_pred hhhhhCcC-------C---------------CCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCCCc
Confidence 77765331 2 5899999999998654445678999999999999999999998754322
Q ss_pred c------------HHHHHHHHhhhhcCCCEEEE-EecCCCCCCCcccCccccCCHHHHHHHhc
Q 008948 489 E------------EEEENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKSILLLG 538 (548)
Q Consensus 489 ~------------~~~~~eL~~l~~~~~~~~v~-vt~~~~~~~~~w~g~~G~I~~~~~~~~~~ 538 (548)
+ ..+.++|++++++..++.++ ++++++++ |.+..|++.+.+.+.+..
T Consensus 138 ~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~---~~~~~g~~~~~l~~~l~~ 197 (236)
T cd06210 138 EARLFFGVNTEAELFYLDELKRLADSLPNLTVRICVWRPGGE---WEGYRGTVVDALREDLAS 197 (236)
T ss_pred eEEEEEecCCHHHhhhHHHHHHHHHhCCCeEEEEEEcCCCCC---cCCccCcHHHHHHHhhcc
Confidence 1 13568999998777775443 44545555 889999998877765543
No 10
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.89 E-value=2.5e-22 Score=199.30 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=135.7
Q ss_pred ccEEEEEEEEecCCEEEEEEECCCCc--ccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEc--CCcchHHH
Q 008948 338 KAVSIQKVAVYPGNVLALHMSKPDRF--RYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLR 412 (548)
Q Consensus 338 ~~~~v~~v~~l~~~v~~l~l~~p~~~--~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~--g~~T~~L~ 412 (548)
..++|++++.+++++..++++.|++. .|+||||+.|.+|+.. +.|||||+|.|. ++.++|+||.. |..|+.|.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--GTRAFSIASSPSDAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCC--CccccccCCCCCCCCEEEEEEEECCCCcchhhHh
Confidence 46789999999999999999988764 8999999999998643 689999999986 67899999998 77888886
Q ss_pred HHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc---
Q 008948 413 TVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE--- 489 (548)
Q Consensus 413 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~--- 489 (548)
+.+ ++ ++.+.|.||+|.+.......+++|+||||+||||++|++++++++....+
T Consensus 85 ~~l-------~~---------------G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l 142 (238)
T cd06211 85 KQL-------KE---------------GDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGDTRKITL 142 (238)
T ss_pred hcC-------CC---------------CCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEE
Confidence 432 12 47999999999987544445789999999999999999999987643221
Q ss_pred ---------HHHHHHHHhhhhcCCCEEE-EEecC--CCCCCCcccCccccCCHHHHHHHh
Q 008948 490 ---------EEEENDLENGRDTGVNTTI-IIIDN--NYEPFFFWTQKKGPIQDKKSILLL 537 (548)
Q Consensus 490 ---------~~~~~eL~~l~~~~~~~~v-~vt~~--~~~~~~~w~g~~G~I~~~~~~~~~ 537 (548)
..+.++++++++.+++..+ ++.++ +.+. |.|.+|++++.+.+...
T Consensus 143 ~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~---~~~~~g~v~~~l~~~~~ 199 (238)
T cd06211 143 FFGARTRAELYYLDEFEALEKDHPNFKYVPALSREPPESN---WKGFTGFVHDAAKKHFK 199 (238)
T ss_pred EEecCChhhhccHHHHHHHHHhCCCeEEEEEECCCCCCcC---cccccCcHHHHHHHhcc
Confidence 1366999999877777433 33343 2234 88999999987666553
No 11
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.89 E-value=3.5e-22 Score=196.79 Aligned_cols=168 Identities=21% Similarity=0.338 Sum_probs=133.0
Q ss_pred cEEEEEEEEecCCEEEEEEECCC--CcccCCCCEEEEEecCCCCCeeeeeecccCCCCCeEEEEEEEc--CCcchHHHHH
Q 008948 339 AVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTV 414 (548)
Q Consensus 339 ~~~v~~v~~l~~~v~~l~l~~p~--~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~~l~l~Ir~~--g~~T~~L~~~ 414 (548)
.++|++++.+++++++++++.|. .+.|+||||+.|++|+.. ++|||||+|.|+++.++|+||.. |..|+.|.+.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~ 80 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTD--ETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDR 80 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCC--cccccccccCCCCCeEEEEEEEcCCCcchhhHHhc
Confidence 57899999999999999999887 678999999999998654 68999999999888999999987 6678877653
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc-----
Q 008948 415 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE----- 489 (548)
Q Consensus 415 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~----- 489 (548)
++ + ++.+.|.||+|.+..+ ...++++|||||+||||++|+++++.......+
T Consensus 81 l~-------~---------------G~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~~~~~v~l~~ 137 (228)
T cd06209 81 AQ-------P---------------GDRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVY 137 (228)
T ss_pred cC-------C---------------CCEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcCCCCcEEEEE
Confidence 31 2 5789999999998654 334789999999999999999999987653211
Q ss_pred ------H-HHHHHHHhhhhcCCCEEEEE-ecCCCCCCCcccCccccCCHHHHHH
Q 008948 490 ------E-EEENDLENGRDTGVNTTIII-IDNNYEPFFFWTQKKGPIQDKKSIL 535 (548)
Q Consensus 490 ------~-~~~~eL~~l~~~~~~~~v~v-t~~~~~~~~~w~g~~G~I~~~~~~~ 535 (548)
+ .+.++++++.+.+++..+++ +++ .+. |.+..|++++.+.+.
T Consensus 138 ~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~-~~~---~~~~~g~v~~~~~~~ 187 (228)
T cd06209 138 GVTRDADLVELDRLEALAERLPGFSFRTVVAD-PDS---WHPRKGYVTDHLEAE 187 (228)
T ss_pred ecCCHHHhccHHHHHHHHHhCCCeEEEEEEcC-CCc---cCCCcCCccHHHHHh
Confidence 1 35689999887777754433 333 233 778999999877664
No 12
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.89 E-value=5.3e-22 Score=195.89 Aligned_cols=171 Identities=15% Similarity=0.206 Sum_probs=132.6
Q ss_pred EEEEEEEecCCEEEEEEECCCC--cccCCCCEEEEEecCCCCCeeeeeecccCCCCCeEEEEEEEc--CCcchHHHHHhh
Q 008948 341 SIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTVFS 416 (548)
Q Consensus 341 ~v~~v~~l~~~v~~l~l~~p~~--~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~~l~l~Ir~~--g~~T~~L~~~~~ 416 (548)
+|++++.+++++.+++++.|.. +.|+||||+.|.++..+...+|||||+|.|.+++++|+||.. |..|+.|.+.++
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~~~~ 81 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHIQ 81 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEECCCCccchHHHhcCC
Confidence 5788999999999999998764 589999999999976555578999999998878899999998 778888765331
Q ss_pred hccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc-------
Q 008948 417 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------- 489 (548)
Q Consensus 417 ~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~------- 489 (548)
+ ++++.|+||||.+..+....++++|||||+||||++|+++++.+.....+
T Consensus 82 -------~---------------Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~~~~v~l~~~~ 139 (231)
T cd06191 82 -------P---------------GMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSA 139 (231)
T ss_pred -------C---------------CCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEec
Confidence 2 58999999999976554456789999999999999999999986533222
Q ss_pred -----HHHHHHHHhhhhcCCCEEEE--EecCC-CCCCCcccCccccCCHHHHHHH
Q 008948 490 -----EEEENDLENGRDTGVNTTII--IIDNN-YEPFFFWTQKKGPIQDKKSILL 536 (548)
Q Consensus 490 -----~~~~~eL~~l~~~~~~~~v~--vt~~~-~~~~~~w~g~~G~I~~~~~~~~ 536 (548)
..+.+||++++++..+..++ +++++ .+. |.+..|++.+++.+.+
T Consensus 140 r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~---~~~~~~~~~~~l~~~~ 191 (231)
T cd06191 140 RTPADMIFAQELRELADKPQRLRLLCIFTRETLDSD---LLHGRIDGEQSLGAAL 191 (231)
T ss_pred CCHHHHhHHHHHHHHHHhCCCeEEEEEECCCCCCcc---ccCCcccccHHHHHHh
Confidence 13668999987766664333 33332 234 8888899887776644
No 13
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.89 E-value=2.4e-22 Score=198.45 Aligned_cols=172 Identities=16% Similarity=0.204 Sum_probs=132.4
Q ss_pred EEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCCC-CeEEEEEEEc--CCcchHHHHHhhhcc
Q 008948 343 QKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEVC 419 (548)
Q Consensus 343 ~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~~~~~~ 419 (548)
++++.+++++.+++++.|.++.|+||||+.|.+|+.+ ..|||||+|.|.+ +.++|+||.. |.+|+.|.+.++
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~~--- 76 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRKPGGAASNALFDNLE--- 76 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcCC---
Confidence 4677899999999999888889999999999998754 6799999999865 7899999987 778988876331
Q ss_pred CCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhc--ccCc--------
Q 008948 420 RPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM--KAIE-------- 489 (548)
Q Consensus 420 ~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~--~~~~-------- 489 (548)
+ ++++.|+||||.+.......+++|+||||+||||++|+++++.... ...+
T Consensus 77 ----~---------------g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r 137 (232)
T cd06190 77 ----P---------------GDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGR 137 (232)
T ss_pred ----C---------------CCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeec
Confidence 2 4789999999998754445678999999999999999999998752 1111
Q ss_pred ----HHHHHHHHhhhhcCCCEEEE-EecCC-CCCCCcccCccccCCHHHHHHHhc
Q 008948 490 ----EEEENDLENGRDTGVNTTII-IIDNN-YEPFFFWTQKKGPIQDKKSILLLG 538 (548)
Q Consensus 490 ----~~~~~eL~~l~~~~~~~~v~-vt~~~-~~~~~~w~g~~G~I~~~~~~~~~~ 538 (548)
..+.++|+++.+.+.++.++ +++++ ......|.+.+|++++.+.+.+..
T Consensus 138 ~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~~~~ 192 (232)
T cd06190 138 TPSDLCALDELSALVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLGD 192 (232)
T ss_pred CHHHHhhHHHHHHHHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhhccC
Confidence 13669999998766665443 33332 221123899999999877766544
No 14
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.89 E-value=3.8e-22 Score=197.04 Aligned_cols=174 Identities=17% Similarity=0.278 Sum_probs=134.8
Q ss_pred cEEEEEEEEecCCEEEEEEECCC--CcccCCCCEEEEEecCCCCCeeeeeecccCCCC-CeEEEEEEEc--CCcchHHHH
Q 008948 339 AVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRT 413 (548)
Q Consensus 339 ~~~v~~v~~l~~~v~~l~l~~p~--~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~-~~l~l~Ir~~--g~~T~~L~~ 413 (548)
+++|.+++.+++++.+++++.++ .+.|+||||+.|.+|+.. ++|||||+|.|.+ ++++|+||.. |.+|+.|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~ 79 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDD 79 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCCCCEEEEEEEECCCCchhhHHhh
Confidence 46899999999999999998654 578999999999998654 7899999999975 8999999998 567877765
Q ss_pred HhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc----
Q 008948 414 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---- 489 (548)
Q Consensus 414 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~---- 489 (548)
..+ + ++++.|.||||.+.....+++++|+||||+||||++|+++++.+...+.+
T Consensus 80 ~l~-------~---------------G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~~~~v~l~ 137 (232)
T cd06212 80 GLA-------V---------------GDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFF 137 (232)
T ss_pred cCC-------C---------------CCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCCCCcEEEE
Confidence 331 2 57999999999987654457899999999999999999999987643322
Q ss_pred --------HHHHHHHHhhhhcCCCEEE-EEecCC-C-CCCCcccCccccCCHHHHHHHhcc
Q 008948 490 --------EEEENDLENGRDTGVNTTI-IIIDNN-Y-EPFFFWTQKKGPIQDKKSILLLGY 539 (548)
Q Consensus 490 --------~~~~~eL~~l~~~~~~~~v-~vt~~~-~-~~~~~w~g~~G~I~~~~~~~~~~~ 539 (548)
..+.++|+++++...++.+ ++.+++ + +. |.+..|++++.+.+.....
T Consensus 138 ~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~---~~~~~g~~~~~~~~~~~~~ 195 (232)
T cd06212 138 YGARTARDLFYLEEIAALGEKIPDFTFIPALSESPDDEG---WSGETGLVTEVVQRNEATL 195 (232)
T ss_pred EeccchHHhccHHHHHHHHHhCCCEEEEEEECCCCCCCC---CcCCcccHHHHHHhhccCc
Confidence 1356899988776666433 344432 2 34 8889999988766655443
No 15
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.89 E-value=4.7e-22 Score=196.53 Aligned_cols=174 Identities=16% Similarity=0.211 Sum_probs=134.0
Q ss_pred cccEEEEEEEEecCCEEEEEEECCCC--cccCCCCEEEEEecCC-CCCeeeeeecccCCCC-CeEEEEEEEc--CCcchH
Q 008948 337 IKAVSIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAV-SPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQ 410 (548)
Q Consensus 337 ~~~~~v~~v~~l~~~v~~l~l~~p~~--~~~~pGQyv~L~~p~~-~~~e~hPFSIaS~p~~-~~l~l~Ir~~--g~~T~~ 410 (548)
|.+++|++++.+++++.+++++.|+. ..|+||||+.|.+|.. +...+|||||+|.|.+ +.++|+||.. |..|+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~ 80 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPY 80 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHH
Confidence 35688999999999999999998876 7899999999999843 3446799999999864 5899999998 457777
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc-
Q 008948 411 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE- 489 (548)
Q Consensus 411 L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~- 489 (548)
|.+.++ + ++.+.|.||||.+..+....+++++||||+||||++|+++++.+.....+
T Consensus 81 l~~~l~-------~---------------Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~~~~i 138 (235)
T cd06217 81 LHDEVK-------V---------------GDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPF 138 (235)
T ss_pred HHhcCC-------C---------------CCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCCCceE
Confidence 654321 2 57999999999976543346889999999999999999999987643322
Q ss_pred -----------HHHHHHHHhhhhcCCCEEEE-EecCC-CCCCCcccCccccCCHHHHHH
Q 008948 490 -----------EEEENDLENGRDTGVNTTII-IIDNN-YEPFFFWTQKKGPIQDKKSIL 535 (548)
Q Consensus 490 -----------~~~~~eL~~l~~~~~~~~v~-vt~~~-~~~~~~w~g~~G~I~~~~~~~ 535 (548)
..+.++|.++.++..++.++ +.+++ .++ |.+.+|+++++..+.
T Consensus 139 ~l~~~~r~~~~~~~~~el~~~~~~~~~~~~~~~~s~~~~~~---~~~~~g~~~~~~l~~ 194 (235)
T cd06217 139 RLLYSARTAEDVIFRDELEQLARRHPNLHVTEALTRAAPAD---WLGPAGRITADLIAE 194 (235)
T ss_pred EEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEeCCCCCCC---cCCcCcEeCHHHHHh
Confidence 13568998887766564433 33333 445 889999999876543
No 16
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.89 E-value=2.6e-22 Score=196.97 Aligned_cols=170 Identities=18% Similarity=0.307 Sum_probs=133.5
Q ss_pred EEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCCC-CeEEEEEEEc--CCcchHHHHHhhhc
Q 008948 342 IQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEV 418 (548)
Q Consensus 342 v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~~~~~ 418 (548)
|++++.+++++++++++.|..+.|+||||+.|.+|..+. .+|||||+|.|.+ +.++|+||.. |.+|+.|.+.++
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l~-- 77 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELK-- 77 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcCc--
Confidence 356788999999999998888899999999999986542 6899999999865 7899999998 788988876331
Q ss_pred cCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc---------
Q 008948 419 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE--------- 489 (548)
Q Consensus 419 ~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~--------- 489 (548)
+ ++.+.|.||||.+......++++|+||||+||||++|+++++..+....+
T Consensus 78 -----~---------------G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~ 137 (224)
T cd06187 78 -----V---------------GDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGART 137 (224)
T ss_pred -----c---------------CCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCC
Confidence 2 57999999999987544446889999999999999999999987643222
Q ss_pred ---HHHHHHHHhhhhcCCCEEEE-EecCCCCCCCcccCccccCCHHHHHHHh
Q 008948 490 ---EEEENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKSILLL 537 (548)
Q Consensus 490 ---~~~~~eL~~l~~~~~~~~v~-vt~~~~~~~~~w~g~~G~I~~~~~~~~~ 537 (548)
..+.++|++++++..+..+. +.+++++. |.|.+|++++.+.+...
T Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~ 186 (224)
T cd06187 138 ERDLYDLEGLLALAARHPWLRVVPVVSHEEGA---WTGRRGLVTDVVGRDGP 186 (224)
T ss_pred hhhhcChHHHHHHHHhCCCeEEEEEeCCCCCc---cCCCcccHHHHHHHhcc
Confidence 12568898887776664443 34444444 78899999988776543
No 17
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.89 E-value=6e-22 Score=197.07 Aligned_cols=179 Identities=13% Similarity=0.185 Sum_probs=137.8
Q ss_pred HHHHHHHhhc----ccccEEEEEEEEecCCEEEEEEECCCC-cccCCCCEEEEEecCCCCCeeeeeecccCCC--CCeEE
Q 008948 326 TERLIRALRS----SIKAVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLS 398 (548)
Q Consensus 326 ~dr~~R~~r~----~~~~~~v~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~--~~~l~ 398 (548)
.||.+|.++. ....++|++++.+++++.+++++.|.. ..|+||||+.|.+|..+...+|||||+|.|+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 4777777543 345688999999999999999998765 4799999999999866666789999999986 78999
Q ss_pred EEEEEc--CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHH
Q 008948 399 VHIRTL--GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMIS 476 (548)
Q Consensus 399 l~Ir~~--g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~ls 476 (548)
|+||.. |.+|..|.+.++ + ++++.|+||||.+..+...++++++||||+||||++|
T Consensus 82 ~~ik~~~~G~~s~~l~~~~~-------~---------------Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s 139 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHLA-------P---------------GDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMS 139 (243)
T ss_pred EEEEEcCCCcchhHHHhcCC-------C---------------CCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHH
Confidence 999999 888988865331 2 5789999999997654444689999999999999999
Q ss_pred HHHHHHHhcccC------------cHHHHHHHHhhhhcCCCEEEE-EecCCCCCCCcccCccccCCHHHHH
Q 008948 477 IVKDIVNNMKAI------------EEEEENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKSI 534 (548)
Q Consensus 477 il~~l~~~~~~~------------~~~~~~eL~~l~~~~~~~~v~-vt~~~~~~~~~w~g~~G~I~~~~~~ 534 (548)
+++++.+..... +..+.++|++++++..+..++ +.+++ +..|+++++..+
T Consensus 140 ~l~~~~~~~~~~~i~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~--------~~~g~~~~~~l~ 202 (243)
T cd06216 140 MLRTLLARGPTADVVLLYYARTREDVIFADELRALAAQHPNLRLHLLYTRE--------ELDGRLSAAHLD 202 (243)
T ss_pred HHHHHHhcCCCCCEEEEEEcCChhhhHHHHHHHHHHHhCCCeEEEEEEcCC--------ccCCCCCHHHHH
Confidence 999998763211 124679999997666665443 23222 456788775443
No 18
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.89 E-value=8e-22 Score=194.38 Aligned_cols=169 Identities=20% Similarity=0.312 Sum_probs=131.5
Q ss_pred EEEEEEEecCCEEEEEEECCCC--cccCCCCEEEEEecCCCCCeeeeeecccCCCC-CeEEEEEEEc--CCcchHHHHHh
Q 008948 341 SIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVF 415 (548)
Q Consensus 341 ~v~~v~~l~~~v~~l~l~~p~~--~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~~ 415 (548)
+|++++.+++++.+++++.|.. +.++||||+.|.+|..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~~ 81 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDNL 81 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhcC
Confidence 6788999999999999999876 78999999999998766666899999999865 5699999998 77888775433
Q ss_pred hhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc------
Q 008948 416 SEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------ 489 (548)
Q Consensus 416 ~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~------ 489 (548)
+ + ++.+.|.||||.+..+....+++||||||+||||++++++++.......+
T Consensus 82 ~-------~---------------G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~~~~v~l~~~ 139 (231)
T cd06215 82 K-------V---------------GDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFIHS 139 (231)
T ss_pred C-------C---------------CCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCCCcEEEEEe
Confidence 1 2 57999999999976543446899999999999999999999987543222
Q ss_pred ------HHHHHHHHhhhhcCCCEEE--EEecCCCCCCCcccCccccCCHHHHH
Q 008948 490 ------EEEENDLENGRDTGVNTTI--IIIDNNYEPFFFWTQKKGPIQDKKSI 534 (548)
Q Consensus 490 ------~~~~~eL~~l~~~~~~~~v--~vt~~~~~~~~~w~g~~G~I~~~~~~ 534 (548)
..+.++|+++.++..+..+ +++++++.. |.+..|+++++..+
T Consensus 140 ~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~l~ 189 (231)
T cd06215 140 ARSPADIIFADELEELARRHPNFRLHLILEQPAPGA---WGGYRGRLNAELLA 189 (231)
T ss_pred cCChhhhhHHHHHHHHHHHCCCeEEEEEEccCCCCc---ccccCCcCCHHHHH
Confidence 1356889988776555333 344333323 78899999986554
No 19
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.89 E-value=4.4e-22 Score=207.81 Aligned_cols=173 Identities=20% Similarity=0.312 Sum_probs=134.8
Q ss_pred cccEEEEEEEEecCCEEEEEEECCC--CcccCCCCEEEEEecCCCCCeeeeeecccCCCC-CeEEEEEEEc--CCcchHH
Q 008948 337 IKAVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQL 411 (548)
Q Consensus 337 ~~~~~v~~v~~l~~~v~~l~l~~p~--~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~-~~l~l~Ir~~--g~~T~~L 411 (548)
..+++|++++.++++++.++++.|. .+.|+||||+.|.+|.. ++|||||+|.|++ ++++|+||.. |.+|+.|
T Consensus 102 ~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~l 178 (339)
T PRK07609 102 KLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHSGGPLELHIRHMPGGVFTDHV 178 (339)
T ss_pred EEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCCCCEEEEEEEecCCCccHHHH
Confidence 3578899999999999999999873 57899999999999863 5899999999975 7999999987 5678777
Q ss_pred HHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc--
Q 008948 412 RTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE-- 489 (548)
Q Consensus 412 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~-- 489 (548)
.+.++ + ++.+.++||||.+..+....+++||||||+||||++|+++++++....++
T Consensus 179 ~~~l~-------~---------------G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~~~i~ 236 (339)
T PRK07609 179 FGALK-------E---------------RDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGIQRPVT 236 (339)
T ss_pred HHhcc-------C---------------CCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCCCCcEE
Confidence 65431 2 57899999999987654466789999999999999999999987643322
Q ss_pred ---------HH-HHHHHHhhhhcCCCEEEE-EecC--CCCCCCcccCccccCCHHHHHHHh
Q 008948 490 ---------EE-EENDLENGRDTGVNTTII-IIDN--NYEPFFFWTQKKGPIQDKKSILLL 537 (548)
Q Consensus 490 ---------~~-~~~eL~~l~~~~~~~~v~-vt~~--~~~~~~~w~g~~G~I~~~~~~~~~ 537 (548)
+. +.+++++++++.+++.++ ++++ +++. |.|++|++++.+.+...
T Consensus 237 l~~g~r~~~dl~~~e~l~~~~~~~~~~~~~~~~s~~~~~~~---~~g~~G~v~~~~~~~~~ 294 (339)
T PRK07609 237 LYWGARRPEDLYLSALAEQWAEELPNFRYVPVVSDALDDDA---WTGRTGFVHQAVLEDFP 294 (339)
T ss_pred EEEecCChHHhccHHHHHHHHHhCCCeEEEEEecCCCCCCC---ccCccCcHHHHHHhhcc
Confidence 12 346677887766675443 3443 2344 88999999988766543
No 20
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.88 E-value=2.1e-21 Score=193.60 Aligned_cols=176 Identities=15% Similarity=0.184 Sum_probs=133.9
Q ss_pred cccEEEEEEEEecCCEEEEEEECCCC---cccCCCCEEEEEecCCC--CCeeeeeecccCCCCCeEEEEEEEc--CCcch
Q 008948 337 IKAVSIQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVS--PFEWHPFSITSAPDDDYLSVHIRTL--GDWTR 409 (548)
Q Consensus 337 ~~~~~v~~v~~l~~~v~~l~l~~p~~---~~~~pGQyv~L~~p~~~--~~e~hPFSIaS~p~~~~l~l~Ir~~--g~~T~ 409 (548)
++.++|++++.+++++.+++++.|.. +.|+||||+.|.++..+ ...+|||||+|.|.++.++|+||.. |..|+
T Consensus 6 ~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~ 85 (247)
T cd06184 6 FRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLVSN 85 (247)
T ss_pred cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEEcCCCcchH
Confidence 45778999999999999999998753 68999999999997543 4689999999999877999999998 88888
Q ss_pred HHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc
Q 008948 410 QLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE 489 (548)
Q Consensus 410 ~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~ 489 (548)
.|.+.++ + ++++.|.||||.+..+..++++++|||||+||||++|+++++.++....+
T Consensus 86 ~l~~~~~-------~---------------Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~~~~ 143 (247)
T cd06184 86 YLHDNVK-------V---------------GDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGPGRP 143 (247)
T ss_pred HHHhcCC-------C---------------CCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCCCCc
Confidence 7765321 2 58999999999987654467899999999999999999999987532211
Q ss_pred ------------HHHHHHHHhhhhcCCCEEEE-EecCCCCC-CCcccCccccCCHHHHH
Q 008948 490 ------------EEEENDLENGRDTGVNTTII-IIDNNYEP-FFFWTQKKGPIQDKKSI 534 (548)
Q Consensus 490 ------------~~~~~eL~~l~~~~~~~~v~-vt~~~~~~-~~~w~g~~G~I~~~~~~ 534 (548)
..+.++|+++++.+.++.++ +++++.+. ...|.+..|+++.+...
T Consensus 144 i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~ 202 (247)
T cd06184 144 VTFIHAARNSAVHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLR 202 (247)
T ss_pred EEEEEEcCchhhHHHHHHHHHHHhhCCCeEEEEEECCCCcccccccccccCccCHHHHh
Confidence 24679999987765564443 34433322 00135678999876433
No 21
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.88 E-value=9.5e-22 Score=195.42 Aligned_cols=166 Identities=18% Similarity=0.253 Sum_probs=130.1
Q ss_pred EEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCC-CCCeeeeeecccCCCCCeEEEEEEEc--CCcchHHHHHhhh
Q 008948 341 SIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAV-SPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTVFSE 417 (548)
Q Consensus 341 ~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~-~~~e~hPFSIaS~p~~~~l~l~Ir~~--g~~T~~L~~~~~~ 417 (548)
+|++++.+++++++++++.|..+.|+||||+.|++|.. +...+|||||+|.|.++.++|+||.. |..|+.|.+ +
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~-l-- 77 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFK-L-- 77 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhc-C--
Confidence 36788899999999999988778899999999999876 66788999999999888999999977 778887753 2
Q ss_pred ccCCCCCCCcccccccCCCCCCCCEEEEe-cccCCCCCCCC-CCCeEEEEEcccCHHHHHHHHHHHHHhcccCc------
Q 008948 418 VCRPPPNGISGLLRAEGHNNPDFPRVLID-GPYGAPAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------ 489 (548)
Q Consensus 418 ~~~~~~~g~~~~~~~~~~~~~~~~~v~I~-GPyG~~~~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~~~~~------ 489 (548)
++ ++.+.+. ||+|.+..+.. ..+++||||||+||||++|+++++....+..+
T Consensus 78 -----~~---------------Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~~~v~l~~~ 137 (241)
T cd06195 78 -----KP---------------GDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERFDKIVLVHG 137 (241)
T ss_pred -----CC---------------CCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCCCCcEEEEEc
Confidence 12 5799999 99999865433 46899999999999999999999985433222
Q ss_pred ------HHHHHHHHhhhhc-CCCEEE-EEecCCCCCCCcccCccccCCHHHH
Q 008948 490 ------EEEENDLENGRDT-GVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKS 533 (548)
Q Consensus 490 ------~~~~~eL~~l~~~-~~~~~v-~vt~~~~~~~~~w~g~~G~I~~~~~ 533 (548)
..+.++|+++.++ ..++.+ ++.+++++. | +..|++++.+.
T Consensus 138 ~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~---~-~~~g~v~~~l~ 185 (241)
T cd06195 138 VRYAEELAYQDEIEALAKQYNGKFRYVPIVSREKEN---G-ALTGRIPDLIE 185 (241)
T ss_pred cCCHHHhhhHHHHHHHHhhcCCCEEEEEEECcCCcc---C-CCceEhHHhhh
Confidence 1367999998766 445433 344444444 5 77899987654
No 22
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.88 E-value=1.3e-21 Score=192.61 Aligned_cols=170 Identities=18% Similarity=0.287 Sum_probs=131.9
Q ss_pred cEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEc--CCcchHHHHHh
Q 008948 339 AVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTVF 415 (548)
Q Consensus 339 ~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~--g~~T~~L~~~~ 415 (548)
+++|++++.+++++++++++.|+.+.|+||||+.|.+|+.. ..|||||+|+|. ++.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCCCCEEEEEEEECCCCcchHHHHhcC
Confidence 46789999999999999999887788999999999998654 689999999986 47899999987 77898886543
Q ss_pred hhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCcH-----
Q 008948 416 SEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE----- 490 (548)
Q Consensus 416 ~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~----- 490 (548)
+ + ++.+.|+||||.+..+ ...+++||||||+||||++|+++++.++....+.
T Consensus 80 ~-------~---------------G~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~~~~~i~l~~~ 136 (227)
T cd06213 80 R-------T---------------GERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAGTKRDVTLLFG 136 (227)
T ss_pred C-------C---------------CCEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcCCCCcEEEEEe
Confidence 1 2 5799999999998754 3457899999999999999999999876543221
Q ss_pred -------HHHHHHHhhhhcC-CCEEEE-Eec-C-CCCCCCcccCccccCCHHHHHHH
Q 008948 491 -------EEENDLENGRDTG-VNTTII-IID-N-NYEPFFFWTQKKGPIQDKKSILL 536 (548)
Q Consensus 491 -------~~~~eL~~l~~~~-~~~~v~-vt~-~-~~~~~~~w~g~~G~I~~~~~~~~ 536 (548)
.+.+++++++++. .++.++ +.+ + ++.. |.|..|++++.+.+..
T Consensus 137 ~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~---~~g~~g~v~~~l~~~~ 190 (227)
T cd06213 137 ARTQRDLYALDEIAAIAARWRGRFRFIPVLSEEPADSS---WKGARGLVTEHIAEVL 190 (227)
T ss_pred eCCHHHhccHHHHHHHHHhccCCeEEEEEecCCCCCCC---ccCCcccHHHHHHhhc
Confidence 2558888887543 344332 333 3 2334 8899999988766544
No 23
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.88 E-value=1.1e-21 Score=199.75 Aligned_cols=172 Identities=15% Similarity=0.201 Sum_probs=133.3
Q ss_pred ccEEEEEEEEecCCEEEEEEECCCC--cccCCCCEEEEEecCC-----------------------------CCCeeeee
Q 008948 338 KAVSIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAV-----------------------------SPFEWHPF 386 (548)
Q Consensus 338 ~~~~v~~v~~l~~~v~~l~l~~p~~--~~~~pGQyv~L~~p~~-----------------------------~~~e~hPF 386 (548)
..++|++++.+++|+.+++++.|++ +.|+||||+.|.+|.. +....|||
T Consensus 10 ~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 89 (283)
T cd06188 10 WECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAY 89 (283)
T ss_pred EEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCcccccc
Confidence 4678999999999999999998875 7899999999999853 12235999
Q ss_pred ecccCCC-CCeEEEEEEE-----------cCCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCC
Q 008948 387 SITSAPD-DDYLSVHIRT-----------LGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ 454 (548)
Q Consensus 387 SIaS~p~-~~~l~l~Ir~-----------~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~ 454 (548)
||+|+|. ++.++|+||. .|..|+.|.+ + ++ ++++.|.||+|.+..
T Consensus 90 Sias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~-l-------~~---------------Gd~v~i~gP~G~f~l 146 (283)
T cd06188 90 SLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFN-L-------KP---------------GDKVTASGPFGEFFI 146 (283)
T ss_pred CcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhc-C-------CC---------------CCEEEEECccccccc
Confidence 9999996 6789999997 3556777754 2 12 589999999999876
Q ss_pred CCCCCCeEEEEEcccCHHHHHHHHHHHHHhccc-Cc------------HHHHHHHHhhhhcCCCEEEEE-ecCCC--CCC
Q 008948 455 DYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-IE------------EEEENDLENGRDTGVNTTIII-IDNNY--EPF 518 (548)
Q Consensus 455 ~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~-~~------------~~~~~eL~~l~~~~~~~~v~v-t~~~~--~~~ 518 (548)
+ ...+++||||||+||||++||+++++..... .+ ..+.++|++++++++++.+++ .+++. +.
T Consensus 147 ~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~- 224 (283)
T cd06188 147 K-DTDREMVFIGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPNFKYHPVLSEPQPEDN- 224 (283)
T ss_pred c-CCCCcEEEEEecccHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEECCCCccCC-
Confidence 4 3567899999999999999999998764322 11 136799999987777755443 34332 44
Q ss_pred CcccCccccCCHHHHHHH
Q 008948 519 FFWTQKKGPIQDKKSILL 536 (548)
Q Consensus 519 ~~w~g~~G~I~~~~~~~~ 536 (548)
|.|.+|+|++.+.+..
T Consensus 225 --~~~~~G~v~~~~~~~~ 240 (283)
T cd06188 225 --WDGYTGFIHQVLLENY 240 (283)
T ss_pred --CCCcceeecHHHHHHH
Confidence 8899999999877643
No 24
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.88 E-value=1.7e-21 Score=203.47 Aligned_cols=171 Identities=18% Similarity=0.295 Sum_probs=134.6
Q ss_pred cccEEEEEEEEecCCEEEEEEECC---CCcccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEcCC--cchH
Q 008948 337 IKAVSIQKVAVYPGNVLALHMSKP---DRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGD--WTRQ 410 (548)
Q Consensus 337 ~~~~~v~~v~~l~~~v~~l~l~~p---~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~g~--~T~~ 410 (548)
...++|++++.+++++..++++.| +.+.|+||||+.|.+|+.. .+|||||+|.|. ++.++|+||..++ .|+.
T Consensus 106 ~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 183 (340)
T PRK11872 106 KISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTD--DWRSYSFANRPNATNQLQFLIRLLPDGVMSNY 183 (340)
T ss_pred eeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCC--ceeecccCCCCCCCCeEEEEEEECCCCcchhh
Confidence 356889999999999999999977 4678999999999998643 589999999996 5789999999744 6777
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc-
Q 008948 411 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE- 489 (548)
Q Consensus 411 L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~- 489 (548)
|.+.. ++ ++.+.|+||||.+..+ ...+++||||||+||||++|+++++++...+++
T Consensus 184 L~~~l-------~~---------------G~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~~~~~v 240 (340)
T PRK11872 184 LRERC-------QV---------------GDEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQGCSPPV 240 (340)
T ss_pred HhhCC-------CC---------------CCEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcCCCCcE
Confidence 75432 12 5899999999998754 345789999999999999999999987643322
Q ss_pred ----------H-HHHHHHHhhhhcCCCEEEE-EecCCCCCCCcccCccccCCHHHHHH
Q 008948 490 ----------E-EEENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKSIL 535 (548)
Q Consensus 490 ----------~-~~~~eL~~l~~~~~~~~v~-vt~~~~~~~~~w~g~~G~I~~~~~~~ 535 (548)
+ .+.++|++++++.+++.++ ++++++++ |.|..|+|++.+.+.
T Consensus 241 ~l~~g~r~~~dl~~~~el~~~~~~~~~~~~~~~~s~~~~~---~~g~~g~v~~~l~~~ 295 (340)
T PRK11872 241 HLYYGVRHAADLCELQRLAAYAERLPNFRYHPVVSKASAD---WQGKRGYIHEHFDKA 295 (340)
T ss_pred EEEEecCChHHhccHHHHHHHHHHCCCcEEEEEEeCCCCc---CCCceeeccHHHHHh
Confidence 1 2569999998777774433 44555566 899999999877653
No 25
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.87 E-value=4.3e-21 Score=190.48 Aligned_cols=171 Identities=18% Similarity=0.270 Sum_probs=133.3
Q ss_pred ccEEEEEEEEecCCEEEEEEECCCC----cccCCCCEEEEEecCCCCCeeeeeecccCCCCCeEEEEEEEc--CCcchHH
Q 008948 338 KAVSIQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQL 411 (548)
Q Consensus 338 ~~~~v~~v~~l~~~v~~l~l~~p~~----~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~~l~l~Ir~~--g~~T~~L 411 (548)
+.++|++++.+++++.+++++.|.+ +.|+||||+.|.+|..+...+|||||+|.|+++.++|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~~~G~~s~~l 81 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEcCCCccchhH
Confidence 4678999999999999999998865 589999999999996566688999999999877999999998 5577777
Q ss_pred HHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCC-CCCeEEEEEcccCHHHHHHHHHHHHHhcccCc-
Q 008948 412 RTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE- 489 (548)
Q Consensus 412 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~~~~~- 489 (548)
.+.. ++ ++.+.|.||+|.+..... +++++++||||+||||++|+++++.......+
T Consensus 82 ~~~~-------~~---------------G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~~~~v 139 (241)
T cd06214 82 NDEL-------KA---------------GDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPASRV 139 (241)
T ss_pred Hhcc-------CC---------------CCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCCCCcE
Confidence 5432 12 478999999999875444 47899999999999999999999987642211
Q ss_pred -----------HHHHHHHHhhhhcCC-CEEE-EEecCCCCCCCcccCccccCCHHHH
Q 008948 490 -----------EEEENDLENGRDTGV-NTTI-IIIDNNYEPFFFWTQKKGPIQDKKS 533 (548)
Q Consensus 490 -----------~~~~~eL~~l~~~~~-~~~v-~vt~~~~~~~~~w~g~~G~I~~~~~ 533 (548)
..+.++++++.+..+ +..+ .+.+++++. |.+..|+++++..
T Consensus 140 ~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~ 193 (241)
T cd06214 140 TLVYGNRTEASVIFREELADLKARYPDRLTVIHVLSREQGD---PDLLRGRLDAAKL 193 (241)
T ss_pred EEEEEeCCHHHhhHHHHHHHHHHhCcCceEEEEEecCCCCC---cccccCccCHHHH
Confidence 136689998876655 3333 344444455 7788999987654
No 26
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.87 E-value=4.2e-21 Score=187.65 Aligned_cols=160 Identities=23% Similarity=0.316 Sum_probs=126.2
Q ss_pred EEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCCC-CeEEEEEEEc--CCcchHHHHHhhhccC
Q 008948 344 KVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEVCR 420 (548)
Q Consensus 344 ~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~~~~~~~ 420 (548)
+++.+++++..++++.|....|+||||+.|.+|..+...+|||||+|.|.+ +.++++||.. |.+|+.|.+..
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~~----- 76 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDLK----- 76 (223)
T ss_pred ceEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcCC-----
Confidence 356678999999999888788999999999999765678999999999976 8999999999 88998886531
Q ss_pred CCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc-----------
Q 008948 421 PPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE----------- 489 (548)
Q Consensus 421 ~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~----------- 489 (548)
+ ++++.|.||+|.+......++++|+||||+||||++|+++++.......+
T Consensus 77 ---~---------------G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~ 138 (223)
T cd00322 77 ---P---------------GDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGARTPA 138 (223)
T ss_pred ---C---------------CCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhCCCCcEEEEEecCCHH
Confidence 2 57999999999986555677899999999999999999999987632211
Q ss_pred -HHHHHHHHhhhhcCCCEEEE-EecCCCCCCCcccCccccCC
Q 008948 490 -EEEENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQ 529 (548)
Q Consensus 490 -~~~~~eL~~l~~~~~~~~v~-vt~~~~~~~~~w~g~~G~I~ 529 (548)
..+.++|+++.+.+.+..++ +++++++. |.+..+.+.
T Consensus 139 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 177 (223)
T cd00322 139 DLLFLDELEELAKEGPNFRLVLALSRESEA---KLGPGGRID 177 (223)
T ss_pred HhhHHHHHHHHHHhCCCeEEEEEecCCCCC---CCcccceee
Confidence 13678999998766665444 44444444 556666554
No 27
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.87 E-value=5.4e-21 Score=199.06 Aligned_cols=170 Identities=15% Similarity=0.254 Sum_probs=130.7
Q ss_pred ccEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCCC-CeEEEEEEEc--CCcchHHHHH
Q 008948 338 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTV 414 (548)
Q Consensus 338 ~~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~ 414 (548)
..++|++++.+++++..++++.++.+.|+||||+.|.++.. ...+|||||+|.|.+ +.++|+||.. |..|+.|.+.
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhc
Confidence 36789999999999999999987788999999999999853 235799999999964 6899999998 5678777643
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc-----
Q 008948 415 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE----- 489 (548)
Q Consensus 415 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~----- 489 (548)
++ + ++++.+.||+|.+..+....+++||||||+||||++||+++++.+....+
T Consensus 89 l~-------~---------------Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y 146 (332)
T PRK10684 89 VK-------R---------------GDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIF 146 (332)
T ss_pred CC-------C---------------CCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEE
Confidence 31 2 58999999999987544456789999999999999999999886543222
Q ss_pred -------HHHHHHHHhhhhcCCCEEEEEecCCCCCCCcccC-ccccCCHHHHH
Q 008948 490 -------EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQ-KKGPIQDKKSI 534 (548)
Q Consensus 490 -------~~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g-~~G~I~~~~~~ 534 (548)
..+.+||+++++++++..++++..... +.| .+|+++++..+
T Consensus 147 ~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~----~~~~~~grl~~~~l~ 195 (332)
T PRK10684 147 NVRTPQDVIFADEWRQLKQRYPQLNLTLVAENNA----TEGFIAGRLTRELLQ 195 (332)
T ss_pred eCCChHHhhhHHHHHHHHHHCCCeEEEEEeccCC----CCCccccccCHHHHH
Confidence 146799999987777755544332211 223 57999976544
No 28
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.87 E-value=4.4e-21 Score=192.25 Aligned_cols=165 Identities=24% Similarity=0.378 Sum_probs=126.5
Q ss_pred EEEEEEecCCEEEEEEECCCC----cccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEcCCcchHHHHHhh
Q 008948 342 IQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQLRTVFS 416 (548)
Q Consensus 342 v~~v~~l~~~v~~l~l~~p~~----~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~g~~T~~L~~~~~ 416 (548)
|.+++.+++++..++++.+.+ ++|+||||+.|.+|..+ .|||||+|+|+ ++.++|+||..|.+|+.|.+ .+
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~-l~ 76 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRVGRVTEALHE-LK 76 (253)
T ss_pred CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeCChhhHHHHc-CC
Confidence 356788999888888876543 78999999999998654 39999999996 68999999999999988864 21
Q ss_pred hccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCC-CCCCCCeEEEEEcccCHHHHHHHHHHHHHhccc-Cc-----
Q 008948 417 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ-DYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-IE----- 489 (548)
Q Consensus 417 ~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~-~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~-~~----- 489 (548)
+ ++++.|+||||.+.. +...++++|+||||+||||++||++++++.... .+
T Consensus 77 -------~---------------G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~ 134 (253)
T cd06221 77 -------P---------------GDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLY 134 (253)
T ss_pred -------C---------------CCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEE
Confidence 2 478999999999543 222568999999999999999999999975321 11
Q ss_pred -------HHHHHHHHhhhhcCCCEEE-EEecCCCCCCCcccCccccCCHHHHHHH
Q 008948 490 -------EEEENDLENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSILL 536 (548)
Q Consensus 490 -------~~~~~eL~~l~~~~~~~~v-~vt~~~~~~~~~w~g~~G~I~~~~~~~~ 536 (548)
..+.++|+++.+. .+..+ ++++++.+. |.+..|++++.+.+..
T Consensus 135 ~~r~~~~~~~~~~L~~l~~~-~~~~~~~~~s~~~~~---~~~~~g~v~~~l~~~~ 185 (253)
T cd06221 135 GARTPEDLLFKEELKEWAKR-SDVEVILTVDRAEEG---WTGNVGLVTDLLPELT 185 (253)
T ss_pred ecCChHHcchHHHHHHHHhc-CCeEEEEEeCCCCCC---ccCCccccchhHHhcC
Confidence 1366999998765 45433 345555555 7888999988766543
No 29
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.87 E-value=2.7e-21 Score=189.75 Aligned_cols=169 Identities=17% Similarity=0.182 Sum_probs=125.1
Q ss_pred EEEEecCCEEEEEEECCCC---cccCCCCEEEEEecCC----------------CCCeeeeeecccCCCC----CeEEEE
Q 008948 344 KVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAV----------------SPFEWHPFSITSAPDD----DYLSVH 400 (548)
Q Consensus 344 ~v~~l~~~v~~l~l~~p~~---~~~~pGQyv~L~~p~~----------------~~~e~hPFSIaS~p~~----~~l~l~ 400 (548)
+.+.+++||.+++++.|.+ +.|+|||||.|++|.. +...+|||||+|.|++ +.++++
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 3567899999999999877 8999999999999853 1135689999999964 689999
Q ss_pred EEEcCCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCC---CCCCeEEEEEcccCHHHHHHH
Q 008948 401 IRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY---KEYEVVLLVGLGIGATPMISI 477 (548)
Q Consensus 401 Ir~~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~---~~~~~vvlIagGiGITP~lsi 477 (548)
||..|++|+.|.+...... ..++.+.|+||||.+..+. .++++++||||||||||++|+
T Consensus 82 vk~~G~~T~~L~~~~~~~~------------------~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~si 143 (220)
T cd06197 82 VRKKGPVTGFLFQVARRLR------------------EQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAM 143 (220)
T ss_pred EEeCCCCCHHHHHhhhccc------------------CCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHH
Confidence 9999999999988653210 1157999999999986543 356899999999999999999
Q ss_pred HHHHHHhccc-C------------cHHHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHHH
Q 008948 478 VKDIVNNMKA-I------------EEEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSIL 535 (548)
Q Consensus 478 l~~l~~~~~~-~------------~~~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~~ 535 (548)
+++++..... . +..+.+||+++.+.......+.+. .++-||..|+++.....+
T Consensus 144 l~~l~~~~~~~~~v~l~~~~r~~~~~~~~~el~~~~~~~~~~~~~~~~-----~v~~CGP~~m~~~~~~~~ 209 (220)
T cd06197 144 LRAILSSRNTTWDITLLWSLREDDLPLVMDTLVRFPGLPVSTTLFITS-----EVYLCGPPALEKAVLEWL 209 (220)
T ss_pred HHHHHhcccCCCcEEEEEEecchhhHHHHHHHHhccCCceEEEEEEec-----cEEEECcHHHHHHHHHHh
Confidence 9999864321 1 124678887764321112233221 366889999887665443
No 30
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.86 E-value=6.2e-21 Score=186.55 Aligned_cols=162 Identities=24% Similarity=0.324 Sum_probs=123.5
Q ss_pred cEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCC-CCeeeeeecccCCCCCeEEEEEEEc---CCcchHHHHH
Q 008948 339 AVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVS-PFEWHPFSITSAPDDDYLSVHIRTL---GDWTRQLRTV 414 (548)
Q Consensus 339 ~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~-~~e~hPFSIaS~p~~~~l~l~Ir~~---g~~T~~L~~~ 414 (548)
+++|++++.+++++.+++++.|+.+.|+||||+.|.++..+ ..++|||||+|.|+++.++|+||.. |+.|+.|.++
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhC
Confidence 56899999999999999999988899999999999997644 3478999999999889999999986 5678777432
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc-----
Q 008948 415 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE----- 489 (548)
Q Consensus 415 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~----- 489 (548)
++ ++++.+.||||.+.. .+++|+||||+||||++|+++++....+..+
T Consensus 82 --------~~---------------G~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~~~~~v~l~~ 134 (218)
T cd06196 82 --------QP---------------GDTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKGKLEGNTLIF 134 (218)
T ss_pred --------CC---------------CCEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCCCCceEEEEE
Confidence 12 579999999999753 2578999999999999999999987543221
Q ss_pred -------HHHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHH
Q 008948 490 -------EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSI 534 (548)
Q Consensus 490 -------~~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~ 534 (548)
..+.++|+++.+ ......+++++.++ ..+|+++++..+
T Consensus 135 ~~r~~~~~~~~~el~~l~~--~~~~~~~s~~~~~~-----~~~g~~~~~~l~ 179 (218)
T cd06196 135 ANKTEKDIILKDELEKMLG--LKFINVVTDEKDPG-----YAHGRIDKAFLK 179 (218)
T ss_pred ecCCHHHHhhHHHHHHhhc--ceEEEEEcCCCCCC-----eeeeEECHHHHH
Confidence 136688888742 23333333333222 257899876544
No 31
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.86 E-value=1.3e-20 Score=188.35 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=125.0
Q ss_pred cccEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCCCCeEEEEEEEc--CCcchHHHHH
Q 008948 337 IKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTV 414 (548)
Q Consensus 337 ~~~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~~l~l~Ir~~--g~~T~~L~~~ 414 (548)
+.+++|++++.+++++++++++.|. ..|+||||+.|.++..+...+|||||+|.|+++.++++||.. |..|+.|.+
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~~- 81 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLAA- 81 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHHh-
Confidence 4678999999999999999999763 379999999999964444468999999999888999999997 778887753
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEecccCC-CCCCCC-CCCeEEEEEcccCHHHHHHHHHHHHHhcccCc---
Q 008948 415 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGA-PAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE--- 489 (548)
Q Consensus 415 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~-~~~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~~~~~--- 489 (548)
+ ++ ++++.|.||+|. +..+.. ..++++||||||||||++|+++++.+.....+
T Consensus 82 l-------~~---------------Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~~~~v~l 139 (248)
T PRK10926 82 L-------KP---------------GDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLERFKNLVL 139 (248)
T ss_pred C-------CC---------------CCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCCCCcEEE
Confidence 2 12 589999999854 333322 34789999999999999999999875433221
Q ss_pred ---------HHHHHHHHhhhhcCC-CEEEE-EecCCCCCCCcccCccccCCHHH
Q 008948 490 ---------EEEENDLENGRDTGV-NTTII-IIDNNYEPFFFWTQKKGPIQDKK 532 (548)
Q Consensus 490 ---------~~~~~eL~~l~~~~~-~~~v~-vt~~~~~~~~~w~g~~G~I~~~~ 532 (548)
..+.++|+++++..+ +..++ +.++++. +.+.+|+|++.+
T Consensus 140 ~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~s~~~~----~~~~~G~v~~~i 189 (248)
T PRK10926 140 VHAARYAADLSYLPLMQELEQRYEGKLRIQTVVSRETA----PGSLTGRVPALI 189 (248)
T ss_pred EEeCCcHHHHHHHHHHHHHHHhCcCCEEEEEEECCCCC----CCCcCCccchhh
Confidence 136799999977654 44443 3443222 235678887644
No 32
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.86 E-value=5.8e-21 Score=187.26 Aligned_cols=142 Identities=23% Similarity=0.242 Sum_probs=114.8
Q ss_pred EEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCCC-CeEEEEEEEc--CCcchHHHHHhhhc
Q 008948 342 IQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEV 418 (548)
Q Consensus 342 v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~-~~l~l~Ir~~--g~~T~~L~~~~~~~ 418 (548)
|++++.+++++++++++.|+.+.|+||||+.|++|.. ..|||||+|.|.+ +.++++||.. |.+|+.|.+..+
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~~-- 75 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEAR-- 75 (222)
T ss_pred CceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhccC--
Confidence 3567889999999999998888999999999999864 5699999999875 7899999987 568887766431
Q ss_pred cCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCC-CCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc--------
Q 008948 419 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY-KEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE-------- 489 (548)
Q Consensus 419 ~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~-~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~-------- 489 (548)
+ ++++.|.||||.+.... .+.+++++||||+||||++|++++++......+
T Consensus 76 -----~---------------G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r 135 (222)
T cd06194 76 -----P---------------GHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGAR 135 (222)
T ss_pred -----C---------------CCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCCCccEEEEEecC
Confidence 2 57999999999987543 456789999999999999999999986543322
Q ss_pred ----HHHHHHHHhhhhcCCCEEE
Q 008948 490 ----EEEENDLENGRDTGVNTTI 508 (548)
Q Consensus 490 ----~~~~~eL~~l~~~~~~~~v 508 (548)
..+.+||+++++.+.++.+
T Consensus 136 ~~~~~~~~~el~~l~~~~~~~~~ 158 (222)
T cd06194 136 DPDDLYLHPALLWLAREHPNFRY 158 (222)
T ss_pred ChhhccCHHHHHHHHHHCCCeEE
Confidence 1367999999876667544
No 33
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.86 E-value=9.5e-21 Score=185.05 Aligned_cols=139 Identities=27% Similarity=0.427 Sum_probs=111.4
Q ss_pred CCEEEEEEECCCC-cccCCCCEEEEEecCCCCCeeeeeecccCCCC-CeEEEEEEEcCCcchHHHHHhhhccCCCCCCCc
Q 008948 350 GNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGIS 427 (548)
Q Consensus 350 ~~v~~l~l~~p~~-~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~-~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~g~~ 427 (548)
.++++++++.+++ +.|+||||+.|.+|..+..++|||||+|.|.+ +.++|+||..|++|+.|.+.++ +
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l~-------~--- 76 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERLK-------P--- 76 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhCC-------C---
Confidence 4688899987766 78999999999998766678999999999875 5999999999999998874431 2
Q ss_pred ccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc------------HHHHHH
Q 008948 428 GLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------------EEEEND 495 (548)
Q Consensus 428 ~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~------------~~~~~e 495 (548)
++++.|+||||.+..+.. ++++++||||+||||++|+++++.++....+ ..+.++
T Consensus 77 ------------G~~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~ 143 (216)
T cd06198 77 ------------GTRVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDE 143 (216)
T ss_pred ------------CCEEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHH
Confidence 479999999999865433 7899999999999999999999987653211 246799
Q ss_pred HHhhhhcCCCEEEEEec
Q 008948 496 LENGRDTGVNTTIIIID 512 (548)
Q Consensus 496 L~~l~~~~~~~~v~vt~ 512 (548)
|+++..++ +..++++.
T Consensus 144 l~~l~~~~-~~~~~~~~ 159 (216)
T cd06198 144 LRALAAAA-GVVLHVID 159 (216)
T ss_pred HHHHHHhc-CeEEEEEe
Confidence 99987665 54444443
No 34
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.86 E-value=2.3e-20 Score=199.09 Aligned_cols=174 Identities=16% Similarity=0.195 Sum_probs=132.4
Q ss_pred ccccEEEEEEEEecCCEEEEEEECCC---CcccCCCCEEEEEecCCC--CCeeeeeecccCCCCCeEEEEEEEc--CCcc
Q 008948 336 SIKAVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVS--PFEWHPFSITSAPDDDYLSVHIRTL--GDWT 408 (548)
Q Consensus 336 ~~~~~~v~~v~~l~~~v~~l~l~~p~---~~~~~pGQyv~L~~p~~~--~~e~hPFSIaS~p~~~~l~l~Ir~~--g~~T 408 (548)
.+..++|++++.+++++..++++.|+ ...|+||||+.|.++..+ ..++|||||+|+|++++++|+||.. |..|
T Consensus 153 ~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~~~G~~S 232 (399)
T PRK13289 153 GWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKREAGGKVS 232 (399)
T ss_pred CcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEECCCCeeh
Confidence 45677999999999999999999764 258999999999986433 2357999999999888999999998 8888
Q ss_pred hHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccC
Q 008948 409 RQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI 488 (548)
Q Consensus 409 ~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~ 488 (548)
..|.+.++ + ++.+.|.||+|.+..+....+++|||||||||||++|++++++++....
T Consensus 233 ~~L~~~l~-------~---------------Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~ 290 (399)
T PRK13289 233 NYLHDHVN-------V---------------GDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQPKR 290 (399)
T ss_pred HHHhhcCC-------C---------------CCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCCCC
Confidence 88875331 2 5899999999998765445678999999999999999999998654322
Q ss_pred c------------HHHHHHHHhhhhcCCCEEE-EEecCCC-CCCCcccC----ccccCCHHHHH
Q 008948 489 E------------EEEENDLENGRDTGVNTTI-IIIDNNY-EPFFFWTQ----KKGPIQDKKSI 534 (548)
Q Consensus 489 ~------------~~~~~eL~~l~~~~~~~~v-~vt~~~~-~~~~~w~g----~~G~I~~~~~~ 534 (548)
+ ..+.++|+++++.+++..+ .+++++. ++ |.+ ..|+++++...
T Consensus 291 ~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~~~~~~~s~~~~~~---~~~~~~~~~g~i~~~~l~ 351 (399)
T PRK13289 291 PVHFIHAARNGGVHAFRDEVEALAARHPNLKAHTWYREPTEQD---RAGEDFDSEGLMDLEWLE 351 (399)
T ss_pred CEEEEEEeCChhhchHHHHHHHHHHhCCCcEEEEEECCCcccc---ccCCcccccCcccHHHHH
Confidence 2 1467999999877666433 3344332 22 333 46999876543
No 35
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.85 E-value=1.8e-20 Score=191.42 Aligned_cols=146 Identities=24% Similarity=0.310 Sum_probs=111.7
Q ss_pred cccEEEEEEEEecCCEEEEEEE--CCC---CcccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEcCCcchH
Q 008948 337 IKAVSIQKVAVYPGNVLALHMS--KPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQ 410 (548)
Q Consensus 337 ~~~~~v~~v~~l~~~v~~l~l~--~p~---~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~g~~T~~ 410 (548)
+++++|++++.+++|+..++++ .|. .+.|+||||+.|++|+.+ .|||||+|.|. ++.++|+||..|.+|+.
T Consensus 5 ~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~~~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 5 LHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPTRKGFFELCIRRAGRVTTV 81 (289)
T ss_pred ceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCCCCCEEEEEEEeCChHHHH
Confidence 3578999999999986555554 442 367999999999998653 48999999986 57899999999999988
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCC-CCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcc-cC
Q 008948 411 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPA-QDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK-AI 488 (548)
Q Consensus 411 L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~-~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~-~~ 488 (548)
|.+ + ++ ++.+.|+||||.+. .+..+.++++|||||+||||++||+++++.+.. ..
T Consensus 82 L~~-l-------~~---------------Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~ 138 (289)
T PRK08345 82 IHR-L-------KE---------------GDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYG 138 (289)
T ss_pred HHh-C-------CC---------------CCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCCCCC
Confidence 753 2 12 47999999999843 322334689999999999999999999887542 11
Q ss_pred c------------HHHHHHHHhhhhcCCCEEE
Q 008948 489 E------------EEEENDLENGRDTGVNTTI 508 (548)
Q Consensus 489 ~------------~~~~~eL~~l~~~~~~~~v 508 (548)
+ ..+.+||++++++..++.+
T Consensus 139 ~v~l~~~~r~~~d~~~~deL~~l~~~~~~~~~ 170 (289)
T PRK08345 139 NITLIYGAKYYEDLLFYDELIKDLAEAENVKI 170 (289)
T ss_pred cEEEEEecCCHHHhhHHHHHHHHHhcCCCEEE
Confidence 1 1367999998766666443
No 36
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.85 E-value=2.3e-20 Score=187.99 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=127.1
Q ss_pred ccEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCCCCeEEEEEEEcCCcchHHHHHhhh
Q 008948 338 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSE 417 (548)
Q Consensus 338 ~~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~~l~l~Ir~~g~~T~~L~~~~~~ 417 (548)
.+++|++++.+++++..++++.| ..|+||||+.|.+|..+ .|||||++.+ +++++|+||..|..|+.|.+ +
T Consensus 8 ~~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~-~~~~~~~Ik~~G~~S~~L~~-l-- 78 (263)
T PRK08221 8 AAYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG-DGYIDLTIRRVGKVTDEIFN-L-- 78 (263)
T ss_pred ccEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC-CCEEEEEEEeCCchhhHHHh-C--
Confidence 35789999999999999999875 47999999999998654 4999999876 77899999999999987754 2
Q ss_pred ccCCCCCCCcccccccCCCCCCCCEEEEecccCC-CCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccC-c------
Q 008948 418 VCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGA-PAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-E------ 489 (548)
Q Consensus 418 ~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~-~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~-~------ 489 (548)
++ ++.+.|+||+|. +..+....+++||||||+||||++|+++++.++.... +
T Consensus 79 -----~~---------------Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g 138 (263)
T PRK08221 79 -----KE---------------GDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILG 138 (263)
T ss_pred -----CC---------------CCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEe
Confidence 12 579999999998 4443334579999999999999999999998753321 1
Q ss_pred ------HHHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHHH
Q 008948 490 ------EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSIL 535 (548)
Q Consensus 490 ------~~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~~ 535 (548)
..+.+||+++++. .+..+ +++++.++ |.+..|++++.+.+.
T Consensus 139 ~r~~~~l~~~~el~~~~~~-~~~~~-~~~~~~~~---~~~~~G~v~~~l~~~ 185 (263)
T PRK08221 139 FKNPDDILFKEDLKRWREK-INLIL-TLDEGEEG---YRGNVGLVTKYIPEL 185 (263)
T ss_pred cCCHHHhhHHHHHHHHhhc-CcEEE-EecCCCCC---CccCccccChhhHhc
Confidence 1366899988653 34333 34444455 889999999776553
No 37
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.85 E-value=2.1e-20 Score=186.94 Aligned_cols=165 Identities=22% Similarity=0.300 Sum_probs=127.6
Q ss_pred cccEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCCCCeEEEEEEEcCCcchHHHHHhh
Q 008948 337 IKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFS 416 (548)
Q Consensus 337 ~~~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~~l~l~Ir~~g~~T~~L~~~~~ 416 (548)
+..++|++++.+++|+.+++++.|+.+.|+||||+.|.+|..+...+|||||+|.| +++++|+||..|.+|+.|.+.
T Consensus 4 ~~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~l~l~Vk~~G~~t~~l~~l-- 80 (250)
T PRK00054 4 PENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-KNEITILYRKVGEGTKKLSKL-- 80 (250)
T ss_pred ceEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-CCEEEEEEEEcChHHHHHhcC--
Confidence 46788999999999999999998777899999999999997766679999999999 889999999999999877532
Q ss_pred hccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc-------
Q 008948 417 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------- 489 (548)
Q Consensus 417 ~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~------- 489 (548)
++ ++++.|+||||.+.....+.+++++||||+||||++|+++++..+..+..
T Consensus 81 ------~~---------------G~~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~~~v~l~~~~r~ 139 (250)
T PRK00054 81 ------KE---------------GDELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKKGVEVTTVLGART 139 (250)
T ss_pred ------CC---------------CCEEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHcCCcEEEEEEcCC
Confidence 12 57999999999843222366899999999999999999999986433211
Q ss_pred --H-HHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHHHH
Q 008948 490 --E-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILL 536 (548)
Q Consensus 490 --~-~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~~~ 536 (548)
+ .+.++|++++ +. ++..+ ++ |.+.+|++++.+.+..
T Consensus 140 ~~d~~~~~el~~~~----~~--~~~~~--~~---~~~~~g~v~~~l~~~~ 178 (250)
T PRK00054 140 KDEVIFEEEFAKVG----DV--YVTTD--DG---SYGFKGFVTDVLDELD 178 (250)
T ss_pred HHHhhhHHHHHhcC----CE--EEEec--CC---CCCcccchhHhHhhhc
Confidence 1 3457777642 11 22222 23 6678899988765543
No 38
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.85 E-value=2.5e-20 Score=191.89 Aligned_cols=172 Identities=17% Similarity=0.129 Sum_probs=129.7
Q ss_pred ccEEEEEEEEec-----CCEEEEEEECCCCcccCCCCEEEEEecCCC------CCeeeeeecccCCCC-----CeEEEEE
Q 008948 338 KAVSIQKVAVYP-----GNVLALHMSKPDRFRYKSGQYMFVNCAAVS------PFEWHPFSITSAPDD-----DYLSVHI 401 (548)
Q Consensus 338 ~~~~v~~v~~l~-----~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~------~~e~hPFSIaS~p~~-----~~l~l~I 401 (548)
..++|++++.++ +++.+|+++.|+++.|+||||+.|..|+.. ...+|+|||+|+|.+ .+++|+|
T Consensus 25 ~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~V 104 (307)
T PLN03116 25 YTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCV 104 (307)
T ss_pred EEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEE
Confidence 467899999998 899999999998999999999999877421 124799999999942 2799999
Q ss_pred EEc---------------CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCC--CCCCeEEE
Q 008948 402 RTL---------------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY--KEYEVVLL 464 (548)
Q Consensus 402 r~~---------------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~--~~~~~vvl 464 (548)
|.. |-.|+.|.+ + + .++.+.|.||+|.+.... ...+++||
T Consensus 105 r~~~~~~~~~~~~~~~~~G~~S~~L~~-l-------~---------------~Gd~v~v~gP~G~f~~~~~~~~~~~~vl 161 (307)
T PLN03116 105 RRAVYYDPETGKEDPAKKGVCSNFLCD-A-------K---------------PGDKVQITGPSGKVMLLPEEDPNATHIM 161 (307)
T ss_pred EEEEEecCCcCCCCCccCcchhhhHhh-C-------C---------------CCCEEEEEEecCCceeCCCCCCCCcEEE
Confidence 975 445655554 3 1 258999999999986421 34568999
Q ss_pred EEcccCHHHHHHHHHHHHHhccc-----------------CcHHHHHHHHhhhhcCC-CEEE-EEecCCCCCCCcccCcc
Q 008948 465 VGLGIGATPMISIVKDIVNNMKA-----------------IEEEEENDLENGRDTGV-NTTI-IIIDNNYEPFFFWTQKK 525 (548)
Q Consensus 465 IagGiGITP~lsil~~l~~~~~~-----------------~~~~~~~eL~~l~~~~~-~~~v-~vt~~~~~~~~~w~g~~ 525 (548)
||||+||||++||+++++..... .+..+.+||+++++.++ ++.+ .+.+++++. |.|..
T Consensus 162 IAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~---~~g~~ 238 (307)
T PLN03116 162 VATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKN---KKGGK 238 (307)
T ss_pred EecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcc---cCCCc
Confidence 99999999999999998764311 11247799999987766 4443 445555555 88888
Q ss_pred ccCCHHHHHH
Q 008948 526 GPIQDKKSIL 535 (548)
Q Consensus 526 G~I~~~~~~~ 535 (548)
|+|++.+.+.
T Consensus 239 g~v~~~l~~~ 248 (307)
T PLN03116 239 MYVQDKIEEY 248 (307)
T ss_pred cchhhHHHHH
Confidence 9998876654
No 39
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.85 E-value=2.9e-20 Score=195.12 Aligned_cols=169 Identities=16% Similarity=0.234 Sum_probs=129.0
Q ss_pred ccEEEEEEEEecCCEEEEEEECCCC----cccCCCCEEEEEecCCCCCeeeeeecccCCCCCeEEEEEEEcC--CcchHH
Q 008948 338 KAVSIQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLG--DWTRQL 411 (548)
Q Consensus 338 ~~~~v~~v~~l~~~v~~l~l~~p~~----~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~~l~l~Ir~~g--~~T~~L 411 (548)
+.++|.+++.+++++.+++|+.|.+ +.|+||||+.|.++..+...+|||||+|.|+++.++|+||..+ ..|..|
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~~~G~~S~~l 81 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWA 81 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEeCCCcchHHH
Confidence 5678999999999999999998743 6899999999999754545689999999998889999999985 456666
Q ss_pred HHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCC--CCCeEEEEEcccCHHHHHHHHHHHHHhcccCc
Q 008948 412 RTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYK--EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE 489 (548)
Q Consensus 412 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~--~~~~vvlIagGiGITP~lsil~~l~~~~~~~~ 489 (548)
.+.+ ++ ++.+.|.||+|.+..+.. ..+++||||||+||||++||+++++.+....+
T Consensus 82 ~~~l-------~~---------------Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~~~~ 139 (352)
T TIGR02160 82 NDEI-------RP---------------GDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPRST 139 (352)
T ss_pred HhcC-------CC---------------CCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCCCce
Confidence 5433 12 589999999999764322 34789999999999999999999987543222
Q ss_pred ------------HHHHHHHHhhhhcCCC-EEEE-EecCCCCCCCcccCccccCCHH
Q 008948 490 ------------EEEENDLENGRDTGVN-TTII-IIDNNYEPFFFWTQKKGPIQDK 531 (548)
Q Consensus 490 ------------~~~~~eL~~l~~~~~~-~~v~-vt~~~~~~~~~w~g~~G~I~~~ 531 (548)
..+.+||+++++.+++ +.++ +.+++++. |.+..|+++..
T Consensus 140 v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~---~~~~~gr~~~~ 192 (352)
T TIGR02160 140 FTLVYGNRRTASVMFAEELADLKDKHPQRFHLAHVLSREPRE---APLLSGRLDGE 192 (352)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhCcCcEEEEEEecCCCcC---cccccCccCHH
Confidence 2467999999776654 4443 44444444 56678888754
No 40
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.85 E-value=2.9e-20 Score=183.41 Aligned_cols=169 Identities=15% Similarity=0.235 Sum_probs=129.5
Q ss_pred EEEEEEEecCCEEEEEEECCC---CcccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEc--CCcchHHHHH
Q 008948 341 SIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTV 414 (548)
Q Consensus 341 ~v~~v~~l~~~v~~l~l~~p~---~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~--g~~T~~L~~~ 414 (548)
+|++++.+++++..++++.|+ .+.++||||+.|.+|..+....|||||+|.|. ++.++|+||.. |..|+.|.+
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~- 80 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHS- 80 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhc-
Confidence 578889999999999999876 37899999999999976666889999999886 45899999997 667877753
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCC-CeEEEEEcccCHHHHHHHHHHHHHhcc-cCc---
Q 008948 415 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEY-EVVLLVGLGIGATPMISIVKDIVNNMK-AIE--- 489 (548)
Q Consensus 415 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~-~~vvlIagGiGITP~lsil~~l~~~~~-~~~--- 489 (548)
. ++ ++++.|+||||.+..+.... +++|+||||+||||++|++++++.+.. ..+
T Consensus 81 ~-------~~---------------G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l 138 (234)
T cd06183 81 L-------KP---------------GDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISL 138 (234)
T ss_pred C-------CC---------------CCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEE
Confidence 2 12 57999999999976543333 789999999999999999999987521 111
Q ss_pred ---------HHHHHHHHhhhhcC-CCEEE-EEecCCCCCCCcccCccccCCHHHHHH
Q 008948 490 ---------EEEENDLENGRDTG-VNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSIL 535 (548)
Q Consensus 490 ---------~~~~~eL~~l~~~~-~~~~v-~vt~~~~~~~~~w~g~~G~I~~~~~~~ 535 (548)
..+.++|+++.... .+..+ ++++++++. |.+..|+++++....
T Consensus 139 ~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~l~~ 192 (234)
T cd06183 139 LYANRTEEDILLREELDELAKKHPDRFKVHYVLSRPPEG---WKGGVGFITKEMIKE 192 (234)
T ss_pred EEecCCHHHhhhHHHHHHHHHhCcccEEEEEEEcCCCcC---CccccceECHHHHHH
Confidence 14678999987653 23333 344444555 889999999876543
No 41
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.84 E-value=5e-20 Score=187.41 Aligned_cols=163 Identities=21% Similarity=0.364 Sum_probs=124.5
Q ss_pred EEEEEEEEecCCEEEEEEECCC-CcccCCCCEEEEEecCCCCCeeeeeecccCC-CCCeEEEEEEEcCCcchHHHHHhhh
Q 008948 340 VSIQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSE 417 (548)
Q Consensus 340 ~~v~~v~~l~~~v~~l~l~~p~-~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p-~~~~l~l~Ir~~g~~T~~L~~~~~~ 417 (548)
++|++++.+++++..++++.|+ ...++||||+.|+++..+ ++|||||+|.| ++++++|+||..|..|+.|.+ +
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~~--~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~-l-- 76 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKG--ERIPLTIADYDREKGTITIVFQAVGKSTRKLAE-L-- 76 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCCC--CceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhc-C--
Confidence 4688899999999999999876 357999999999997543 57999999976 467899999999999988863 2
Q ss_pred ccCCCCCCCcccccccCCCCCCCCEE-EEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccC--------
Q 008948 418 VCRPPPNGISGLLRAEGHNNPDFPRV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-------- 488 (548)
Q Consensus 418 ~~~~~~~g~~~~~~~~~~~~~~~~~v-~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~-------- 488 (548)
++ ++.+ .|.||+|.+.. ..+++++++||||+||||++|+++++.++..+-
T Consensus 77 -----~~---------------Gd~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~~~~v~l~~g~r~ 135 (281)
T PRK06222 77 -----KE---------------GDSILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEAGNKVITIIGARN 135 (281)
T ss_pred -----CC---------------CCEEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 12 4788 69999999864 334679999999999999999999987654221
Q ss_pred -cH-HHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHHHHhc
Q 008948 489 -EE-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLG 538 (548)
Q Consensus 489 -~~-~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~~~~~ 538 (548)
++ .+.++|+++..+ +++++++ + |.|.+|+|++.+.+.+..
T Consensus 136 ~~d~~~~~el~~~~~~-----~~v~~~d--~---~~g~~G~v~~~l~~~~~~ 177 (281)
T PRK06222 136 KDLLILEDEMKAVSDE-----LYVTTDD--G---SYGRKGFVTDVLKELLES 177 (281)
T ss_pred HHHhhcHHHHHhhCCe-----EEEEcCC--C---CcCcccchHHHHHHHhhc
Confidence 11 245778776432 2333332 3 678999999877766543
No 42
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.84 E-value=6.1e-20 Score=183.44 Aligned_cols=163 Identities=23% Similarity=0.347 Sum_probs=124.2
Q ss_pred EEEEEEEecCCEEEEEEECCCC-cccCCCCEEEEEecCCCCCeeeeeecccCC-CCCeEEEEEEEcCCcchHHHHHhhhc
Q 008948 341 SIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSEV 418 (548)
Q Consensus 341 ~v~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p-~~~~l~l~Ir~~g~~T~~L~~~~~~~ 418 (548)
+|++++.++++++.++++.|+. ..|+||||+.|+++..+ ++|||||+|+| ++++++|+||..|+.|..|.++.
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~~--~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l~--- 76 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEKG--ERIPLTIADWDPEKGTITIVVQVVGKSTRELATLE--- 76 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCCC--CccceEeEEEcCCCCEEEEEEEeCCchHHHHHhcC---
Confidence 5788899999999999998763 57999999999987433 67999999986 46789999999999997774321
Q ss_pred cCCCCCCCcccccccCCCCCCCCEE-EEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhccc---------C
Q 008948 419 CRPPPNGISGLLRAEGHNNPDFPRV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA---------I 488 (548)
Q Consensus 419 ~~~~~~g~~~~~~~~~~~~~~~~~v-~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~---------~ 488 (548)
+ ++++ .++||||.+... .+++++|+||||+||||++|+++++.+..++ .
T Consensus 77 -----~---------------G~~v~~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~l~~~~~~~~~v~l~~~~r~~ 135 (248)
T cd06219 77 -----E---------------GDKIHDVVGPLGKPSEI-ENYGTVVFVGGGVGIAPIYPIAKALKEAGNRVITIIGARTK 135 (248)
T ss_pred -----C---------------CCEeeeeecCCCCCeec-CCCCeEEEEeCcccHHHHHHHHHHHHHcCCeEEEEEEcCCH
Confidence 2 4788 699999998643 4467999999999999999999998865321 1
Q ss_pred cH-HHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHHHHhcc
Q 008948 489 EE-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLGY 539 (548)
Q Consensus 489 ~~-~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~~~~~~ 539 (548)
++ .+.+||++++++ +++..+ ++ |.+..|++++.+.+.+...
T Consensus 136 ~~~~~~~el~~l~~~-----~~~~~~--~~---~~~~~g~v~~~l~~~~~~~ 177 (248)
T cd06219 136 DLVILEDEFRAVSDE-----LIITTD--DG---SYGEKGFVTDPLKELIESG 177 (248)
T ss_pred HHhhhHHHHHhhcCe-----EEEEeC--CC---CCCccccchHHHHHHHhcc
Confidence 11 356888888532 122222 23 6788899998877766433
No 43
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.84 E-value=1.3e-19 Score=187.08 Aligned_cols=174 Identities=11% Similarity=0.085 Sum_probs=133.1
Q ss_pred hcccccEEEEEEEEecCCEEEEEEECCC--CcccCCCCEEEEEecCC---CCCeeeeeecccCCC-CCeEEEEEEEcC--
Q 008948 334 RSSIKAVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAV---SPFEWHPFSITSAPD-DDYLSVHIRTLG-- 405 (548)
Q Consensus 334 r~~~~~~~v~~v~~l~~~v~~l~l~~p~--~~~~~pGQyv~L~~p~~---~~~e~hPFSIaS~p~-~~~l~l~Ir~~g-- 405 (548)
...+.+++|.+++.+++|+.+++|+.|. .+.++||||+.+.++.. ....+|||||+|.|+ +++++|+||..+
T Consensus 49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G 128 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDG 128 (325)
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCC
Confidence 3567889999999999999999998765 68999999999877632 223689999999996 578999999974
Q ss_pred CcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhc
Q 008948 406 DWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM 485 (548)
Q Consensus 406 ~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~ 485 (548)
..|..|.+ + ++ ++.+.+.||+|....+....+++|+|||||||||++||+++++++.
T Consensus 129 ~~S~~L~~-l-------k~---------------Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~ 185 (325)
T PTZ00274 129 LMTNHLFG-M-------HV---------------GDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEP 185 (325)
T ss_pred cccHHHhc-C-------CC---------------CCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcc
Confidence 46887764 3 12 5899999998876544344578999999999999999999988753
Q ss_pred c-----cC-c------------HHHHHHHHhhhhcCCC-EEE-EEecCC--CCCCCcccCccccCCHHHH
Q 008948 486 K-----AI-E------------EEEENDLENGRDTGVN-TTI-IIIDNN--YEPFFFWTQKKGPIQDKKS 533 (548)
Q Consensus 486 ~-----~~-~------------~~~~~eL~~l~~~~~~-~~v-~vt~~~--~~~~~~w~g~~G~I~~~~~ 533 (548)
. +. + ..+.++|+++++++++ +.+ ++++++ .+. |.|..|+|++++.
T Consensus 186 ~~~~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~---w~g~~G~V~~~ll 252 (325)
T PTZ00274 186 WDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDK---WNHFLGYVTKEMV 252 (325)
T ss_pred cccccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccC---CCCCCCccCHHHH
Confidence 1 11 1 1467999999877664 433 444432 344 8899999999863
No 44
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.84 E-value=9.4e-20 Score=185.87 Aligned_cols=172 Identities=17% Similarity=0.191 Sum_probs=129.8
Q ss_pred ccEEEEEEEEec-----CCEEEEEEECCCCcccCCCCEEEEEecCCC-----CCeeeeeecccCCCC-----CeEEEEEE
Q 008948 338 KAVSIQKVAVYP-----GNVLALHMSKPDRFRYKSGQYMFVNCAAVS-----PFEWHPFSITSAPDD-----DYLSVHIR 402 (548)
Q Consensus 338 ~~~~v~~v~~l~-----~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~-----~~e~hPFSIaS~p~~-----~~l~l~Ir 402 (548)
..++|++++.++ +++.+++++.+..+.|+||||+.|.+|+.. ....|||||+|.|.+ ++++|+||
T Consensus 9 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk 88 (286)
T cd06208 9 LIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVK 88 (286)
T ss_pred eEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEE
Confidence 457899999998 699999999877889999999999877432 124799999998843 58999999
Q ss_pred Ec------------CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCC-CCCCeEEEEEccc
Q 008948 403 TL------------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY-KEYEVVLLVGLGI 469 (548)
Q Consensus 403 ~~------------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~-~~~~~vvlIagGi 469 (548)
.. |..|+.|.+ . ++ +++|.|.||+|.+.... ...+++||||||+
T Consensus 89 ~~~~~~~~~~~~~~G~~S~~L~~-l-------~~---------------Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGt 145 (286)
T cd06208 89 RLVYTDPETDETKKGVCSNYLCD-L-------KP---------------GDDVQITGPVGKTMLLPEDPNATLIMIATGT 145 (286)
T ss_pred EEEEecCCCCceeccchHHHHhh-C-------CC---------------CCEEEEEeecCCcccCCCCCCCCEEEEecCc
Confidence 88 556666654 2 12 58999999999976432 2346899999999
Q ss_pred CHHHHHHHHHHHHHhc-----ccC------------cHHHHHHHHhhhhcCC-CEEE-EEecCCCCCCCcccCccccCCH
Q 008948 470 GATPMISIVKDIVNNM-----KAI------------EEEEENDLENGRDTGV-NTTI-IIIDNNYEPFFFWTQKKGPIQD 530 (548)
Q Consensus 470 GITP~lsil~~l~~~~-----~~~------------~~~~~~eL~~l~~~~~-~~~v-~vt~~~~~~~~~w~g~~G~I~~ 530 (548)
||||++|++++++.+. ... +..+.++|+++++++. +..+ .+++++++. |.|.+|+|++
T Consensus 146 GIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~---~~g~~g~v~~ 222 (286)
T cd06208 146 GIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKN---ADGGKMYVQD 222 (286)
T ss_pred cHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCC---CCCCceehhh
Confidence 9999999999988652 111 1246799999987665 3443 345555555 8888999988
Q ss_pred HHHHH
Q 008948 531 KKSIL 535 (548)
Q Consensus 531 ~~~~~ 535 (548)
.+.+.
T Consensus 223 ~i~~~ 227 (286)
T cd06208 223 RIAEY 227 (286)
T ss_pred HHHHh
Confidence 76653
No 45
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.84 E-value=6.3e-20 Score=183.12 Aligned_cols=165 Identities=19% Similarity=0.279 Sum_probs=125.4
Q ss_pred EEEEEEecCCEEEEEEECCC-CcccCCCCEEEEEecC-CCCCeeeeeecccCC-CCCeEEEEEEEcCCcchHHHHHhhhc
Q 008948 342 IQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAA-VSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSEV 418 (548)
Q Consensus 342 v~~v~~l~~~v~~l~l~~p~-~~~~~pGQyv~L~~p~-~~~~e~hPFSIaS~p-~~~~l~l~Ir~~g~~T~~L~~~~~~~ 418 (548)
|++++.+++++.+++++.|. ...|+||||+.|.+|. .+...+|||||+|.| +++.++|+||..|++|+.|.++
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l---- 76 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSEL---- 76 (246)
T ss_pred CcceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhcC----
Confidence 35678899999999999887 6789999999999986 345678999999988 4789999999999998776432
Q ss_pred cCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhccc---------Cc
Q 008948 419 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA---------IE 489 (548)
Q Consensus 419 ~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~---------~~ 489 (548)
++ ++++.|+||||.+.......+++++||||+||||++|+++++.....+ .+
T Consensus 77 ----~~---------------Gd~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~v~l~~~~r~~~ 137 (246)
T cd06218 77 ----KA---------------GDELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAERGIKVTVLLGFRSAD 137 (246)
T ss_pred ----CC---------------CCEEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhcCCceEEEEEccchh
Confidence 12 589999999997443233578999999999999999999999873221 11
Q ss_pred -HHHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHHHHhcc
Q 008948 490 -EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLGY 539 (548)
Q Consensus 490 -~~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~~~~~~ 539 (548)
..+.++|+++.. + +++..+ +. |.+.+|++++.+.+.....
T Consensus 138 d~~~~~eL~~l~~---~--~~~~~~--~~---~~~~~g~v~~~l~~~~~~~ 178 (246)
T cd06218 138 DLFLVEEFEALGA---E--VYVATD--DG---SAGTKGFVTDLLKELLAEA 178 (246)
T ss_pred hhhhHHHHHhhCC---c--EEEEcC--CC---CCCcceehHHHHHHHhhcc
Confidence 135688887732 2 233322 23 6688899998777665543
No 46
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.84 E-value=7.4e-20 Score=182.16 Aligned_cols=157 Identities=22% Similarity=0.309 Sum_probs=119.5
Q ss_pred EEEEEEecCCEEEEEEECCC-CcccCCCCEEEEEecCCCCCeeeeeecccCC-CCCeEEEEEEEcCCcchHHHHHhhhcc
Q 008948 342 IQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSEVC 419 (548)
Q Consensus 342 v~~v~~l~~~v~~l~l~~p~-~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p-~~~~l~l~Ir~~g~~T~~L~~~~~~~~ 419 (548)
|++++.+++++.+++++.|+ .+.|+||||++|.+|..+..++|||||+|.| ++++++|+||..|..|+.|.+ +
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~-~---- 75 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAE-L---- 75 (243)
T ss_pred CceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHh-C----
Confidence 35678899999999999876 4689999999999976455689999999987 468999999999999987753 2
Q ss_pred CCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhccc---------CcH
Q 008948 420 RPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA---------IEE 490 (548)
Q Consensus 420 ~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~---------~~~ 490 (548)
++ ++.+.|.||||.+.......++++|||||+||||++|+++++.++.++ .++
T Consensus 76 ---~~---------------G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~~~v~l~~~~r~~~d 137 (243)
T cd06192 76 ---KP---------------GEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANGNKVTVLAGAKKAKE 137 (243)
T ss_pred ---CC---------------CCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCCCeEEEEEecCcHHH
Confidence 12 579999999998765433468999999999999999999999875321 111
Q ss_pred -HHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHH
Q 008948 491 -EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDK 531 (548)
Q Consensus 491 -~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~ 531 (548)
.+.+||+++. ...++++ + ++ |.+.+|++++.
T Consensus 138 ~~~~~el~~~~----~~~~~~~-~--~~---~~~~~g~v~~~ 169 (243)
T cd06192 138 EFLDEYFELPA----DVEIWTT-D--DG---ELGLEGKVTDS 169 (243)
T ss_pred HHHHHHHHhhc----CeEEEEe-c--CC---CCccceeechh
Confidence 3557777651 2233333 2 23 66788888765
No 47
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.83 E-value=1.2e-19 Score=182.58 Aligned_cols=162 Identities=22% Similarity=0.312 Sum_probs=124.6
Q ss_pred cEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCCCCeEEEEEEEcCCcchHHHHHhhhc
Q 008948 339 AVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEV 418 (548)
Q Consensus 339 ~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~~l~l~Ir~~g~~T~~L~~~~~~~ 418 (548)
.++|+++...+++++.++++.| +.|+||||+.|.+|..+ .|||||++. +++.++|+||..|+.|..|.+ +
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~~---~~pySi~~~-~~~~l~~~Vk~~G~~S~~L~~-l--- 76 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKYG---EAPISVSGI-GEGYIDLTIRRVGKVTDEVFT-L--- 76 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCCC---ccceecCCC-CCCeEEEEEEeCchhhHHHHc-C---
Confidence 5788999999999999999765 57999999999998753 589999984 578899999999999987753 2
Q ss_pred cCCCCCCCcccccccCCCCCCCCEEEEecccCC-CCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccC-c-------
Q 008948 419 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGA-PAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-E------- 489 (548)
Q Consensus 419 ~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~-~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~-~------- 489 (548)
++ ++++.|+||||. +..+....+++++||||+||||++|++++++++..+. +
T Consensus 77 ----~~---------------Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~ 137 (261)
T TIGR02911 77 ----KE---------------GDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGF 137 (261)
T ss_pred ----CC---------------CCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEec
Confidence 12 589999999999 4333335679999999999999999999988753221 1
Q ss_pred -----HHHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHH
Q 008948 490 -----EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSI 534 (548)
Q Consensus 490 -----~~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~ 534 (548)
..+.+||++++.. .++...+ +++.++ |.+..|++++.+.+
T Consensus 138 r~~~~~~~~~eL~~l~~~-~~~~~~~-~~~~~~---~~~~~g~v~~~l~~ 182 (261)
T TIGR02911 138 KTPDDILFKEDIAEWKGN-INLTLTL-DEAEED---YKGNIGLVTKYIPE 182 (261)
T ss_pred CCHHHhhHHHHHHHHHhc-CcEEEEE-cCCCCC---CcCCeeccCHhHHh
Confidence 1366889998653 3444333 344445 78899999977655
No 48
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.83 E-value=3e-19 Score=179.27 Aligned_cols=146 Identities=20% Similarity=0.319 Sum_probs=123.7
Q ss_pred ccccEEEEEEEEecCCEEEEEEECCCCc--ccCCCCEEEEEecCCCCCeeeeeecccCCCCC-eEEEEEEEc--CCcchH
Q 008948 336 SIKAVSIQKVAVYPGNVLALHMSKPDRF--RYKSGQYMFVNCAAVSPFEWHPFSITSAPDDD-YLSVHIRTL--GDWTRQ 410 (548)
Q Consensus 336 ~~~~~~v~~v~~l~~~v~~l~l~~p~~~--~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~-~l~l~Ir~~--g~~T~~ 410 (548)
.+..++|.+++..+++++++++..|.+. .|+||||+.|.++..+....|.|||+|+|.++ .+.+.||+. |..|+.
T Consensus 4 ~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~ 83 (266)
T COG1018 4 GFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNW 83 (266)
T ss_pred ceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHH
Confidence 3567899999999999999999999877 59999999999998777889999999999875 899999998 678888
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc-
Q 008948 411 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE- 489 (548)
Q Consensus 411 L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~- 489 (548)
|.+.++ + |+++.|.+|.|.+..+....++++|+||||||||++||++++....+ .+
T Consensus 84 Lh~~lk-------~---------------Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~~-~~v 140 (266)
T COG1018 84 LHDHLK-------V---------------GDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRGP-ADV 140 (266)
T ss_pred HHhcCC-------C---------------CCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhCC-CCE
Confidence 876552 2 58999999999998766555689999999999999999999988774 32
Q ss_pred -----------HHHHHHHHhhhhcCCC
Q 008948 490 -----------EEEENDLENGRDTGVN 505 (548)
Q Consensus 490 -----------~~~~~eL~~l~~~~~~ 505 (548)
..|.+| +.+..+.++
T Consensus 141 ~l~h~~R~~~~~af~de-~~l~~~~~~ 166 (266)
T COG1018 141 VLVHAARTPADLAFRDE-LELAAELPN 166 (266)
T ss_pred EEEEecCChhhcchhhH-HHHHhhCCC
Confidence 147788 777766665
No 49
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.82 E-value=2e-19 Score=192.34 Aligned_cols=171 Identities=16% Similarity=0.263 Sum_probs=131.4
Q ss_pred ccEEEEEEEEecCCEEEEEEECC--CCcccCCCCEEEEEecCC-----------------------------CCCeeeee
Q 008948 338 KAVSIQKVAVYPGNVLALHMSKP--DRFRYKSGQYMFVNCAAV-----------------------------SPFEWHPF 386 (548)
Q Consensus 338 ~~~~v~~v~~l~~~v~~l~l~~p--~~~~~~pGQyv~L~~p~~-----------------------------~~~e~hPF 386 (548)
.+++|++++.+++++.+++++.| .+..|+||||+.|.+|.. +....|||
T Consensus 134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 213 (409)
T PRK05464 134 WECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAY 213 (409)
T ss_pred EEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeee
Confidence 36789999999999999999987 357899999999999842 22457999
Q ss_pred ecccCCC-CCeEEEEEEEc-----------CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCC
Q 008948 387 SITSAPD-DDYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ 454 (548)
Q Consensus 387 SIaS~p~-~~~l~l~Ir~~-----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~ 454 (548)
||+|.|. +++++|+||.. |..|+.|.+ + ++ ++.+.|.||+|.+..
T Consensus 214 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l-------~~---------------Gd~v~v~gP~G~f~~ 270 (409)
T PRK05464 214 SMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFS-L-------KP---------------GDKVTISGPFGEFFA 270 (409)
T ss_pred ccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHh-C-------CC---------------CCEEEEEccccCcEe
Confidence 9999996 46899999973 667777763 2 12 589999999999875
Q ss_pred CCCCCCeEEEEEcccCHHHHHHHHHHHHHhccc-Cc-----------H-HHHHHHHhhhhcCCCEEEEE-ecCC--CCCC
Q 008948 455 DYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-IE-----------E-EEENDLENGRDTGVNTTIII-IDNN--YEPF 518 (548)
Q Consensus 455 ~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~-~~-----------~-~~~~eL~~l~~~~~~~~v~v-t~~~--~~~~ 518 (548)
. ...+++||||||+||||++|++++++.+... .+ + .+.++|+++++++.+..+++ ++++ ++.
T Consensus 271 ~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~- 348 (409)
T PRK05464 271 K-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDN- 348 (409)
T ss_pred c-CCCceEEEEEeccChhHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCC-
Confidence 4 4568999999999999999999988765221 11 1 35689999987777754443 3432 234
Q ss_pred CcccCccccCCHHHHHH
Q 008948 519 FFWTQKKGPIQDKKSIL 535 (548)
Q Consensus 519 ~~w~g~~G~I~~~~~~~ 535 (548)
|.|.+|+|++.+.+.
T Consensus 349 --~~g~~G~v~~~l~~~ 363 (409)
T PRK05464 349 --WTGYTGFIHNVLYEN 363 (409)
T ss_pred --CCCccceeCHHHHHh
Confidence 889999999877653
No 50
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.82 E-value=4.2e-22 Score=172.63 Aligned_cols=99 Identities=39% Similarity=0.843 Sum_probs=7.2
Q ss_pred cEEEEEEEEecCCEEEEEEECCCC-cccCCCCEEEEEecCCC--CCeeeeeecccCCCCCeEEEEEEEcCCcchHHHHHh
Q 008948 339 AVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVS--PFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVF 415 (548)
Q Consensus 339 ~~~v~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~L~~p~~~--~~e~hPFSIaS~p~~~~l~l~Ir~~g~~T~~L~~~~ 415 (548)
++++++++.+++|++++++++|.. ++|+||||+||++|.++ .+|||||||+|+|+++.++++||..||||++|++.+
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik~~g~~T~~L~~~~ 82 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIKARGGWTKRLYEHL 82 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEEeCCCchHHHHHHH
Confidence 567888999999999999999986 99999999999999999 569999999999999999999999999999999887
Q ss_pred hhccCCCCCCCcccccccCCCCCCCCEEEEecccCCC
Q 008948 416 SEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP 452 (548)
Q Consensus 416 ~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~ 452 (548)
++..+ +.....++.||||||.+
T Consensus 83 ~~~~~---------------~~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 83 SESPS---------------KQGNRLRVFIDGPYGAP 104 (105)
T ss_dssp -----------------------------TTSTTSHH
T ss_pred hhhcc---------------cCCCceEEEEECCCCCC
Confidence 54210 01124799999999975
No 51
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.82 E-value=3e-19 Score=176.78 Aligned_cols=153 Identities=24% Similarity=0.309 Sum_probs=118.0
Q ss_pred EEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCCCCeEEEEEEEcCCcchHHHHHhhhcc
Q 008948 340 VSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVC 419 (548)
Q Consensus 340 ~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~~l~l~Ir~~g~~T~~L~~~~~~~~ 419 (548)
++|++++.+++++.+++++.| +.|+||||+.|.+|+. ..|||||+|.| +.++|+||..|.+|+.|.+ .+
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~--~~l~~~v~~~G~~s~~L~~-l~--- 69 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID--GPNSITVKKVGEATSALHD-LK--- 69 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC--CeEEEEEEecChHHHHHHh-cC---
Confidence 468899999999999999875 5899999999999865 36999999998 7899999999999998875 31
Q ss_pred CCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhccc---------CcH
Q 008948 420 RPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA---------IEE 490 (548)
Q Consensus 420 ~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~---------~~~ 490 (548)
+ ++++.|+||||.+.. .. ++++|+||||+||||++|+++++..+ ++ .++
T Consensus 70 ----~---------------Gd~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~-~~i~l~~~~r~~~d 127 (233)
T cd06220 70 ----E---------------GDKLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKA-ADVTVLLGARTKEE 127 (233)
T ss_pred ----C---------------CCEEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhc-CCEEEEEecCChHH
Confidence 2 589999999998442 22 68999999999999999999999875 11 111
Q ss_pred -HHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHHHH
Q 008948 491 -EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILL 536 (548)
Q Consensus 491 -~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~~~ 536 (548)
.+.+||++. .+.. .++ + ++ |.+.+|++++.+.+..
T Consensus 128 ~~~~~eL~~~----~~~~-~~~-~--~~---~~~~~g~~~~~l~~~~ 163 (233)
T cd06220 128 LLFLDRLRKS----DELI-VTT-D--DG---SYGFKGFVTDLLKELD 163 (233)
T ss_pred ChhHHHHhhC----CcEE-EEE-e--CC---CCcccceehHHHhhhc
Confidence 355777762 1222 222 2 23 6788899988766554
No 52
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.82 E-value=2.9e-19 Score=183.31 Aligned_cols=174 Identities=16% Similarity=0.281 Sum_probs=128.8
Q ss_pred hcccccEEEEEEEEecCCEEEEEEECCC---CcccCCCCEEEEEecCCCC----CeeeeeecccCCC-CCeEEEEEEEc-
Q 008948 334 RSSIKAVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSP----FEWHPFSITSAPD-DDYLSVHIRTL- 404 (548)
Q Consensus 334 r~~~~~~~v~~v~~l~~~v~~l~l~~p~---~~~~~pGQyv~L~~p~~~~----~e~hPFSIaS~p~-~~~l~l~Ir~~- 404 (548)
...+..++|++++.+++++..++++.+. .+.|+||||+.|.++..+. ...||||++|.|. ++.++|+||..
T Consensus 30 ~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~ 109 (300)
T PTZ00319 30 PDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYF 109 (300)
T ss_pred cCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEec
Confidence 3445678999999999999999998653 2679999999999975321 4689999999885 57899999987
Q ss_pred ----------CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCC---------------CCC
Q 008948 405 ----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY---------------KEY 459 (548)
Q Consensus 405 ----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~---------------~~~ 459 (548)
|..|+.|.+ + ++ ++.+.|+||+|.+.... .+.
T Consensus 110 ~~~~~~~~~~G~~S~~L~~-l-------~~---------------Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~ 166 (300)
T PTZ00319 110 KGVHPSFPNGGRLSQHLYH-M-------KL---------------GDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHV 166 (300)
T ss_pred cCCCCCCCCCCChhhhhhc-C-------CC---------------CCEEEEEccceeeEecCCcceeecccccccccccc
Confidence 777877732 2 12 58999999999874221 123
Q ss_pred CeEEEEEcccCHHHHHHHHHHHHHhcccC-c------------HHHHHHHHhhhhcCCCEEEE-Eec-CCCCCCCcccCc
Q 008948 460 EVVLLVGLGIGATPMISIVKDIVNNMKAI-E------------EEEENDLENGRDTGVNTTII-IID-NNYEPFFFWTQK 524 (548)
Q Consensus 460 ~~vvlIagGiGITP~lsil~~l~~~~~~~-~------------~~~~~eL~~l~~~~~~~~v~-vt~-~~~~~~~~w~g~ 524 (548)
+++++||||+||||++|++++++.+..+. + ..+.++|+++ ....+..++ +.+ ++++. |.+.
T Consensus 167 ~~illIAgGtGIaP~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~-~~~~~~~~~~~~~~~~~~~---~~~~ 242 (300)
T PTZ00319 167 DAFAMIAGGTGITPMLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEA-AKDPRFHVWYTLDREATPE---WKYG 242 (300)
T ss_pred ceEEEEecCcccCHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHH-hhCCCEEEEEEECCCCCCC---cccc
Confidence 57999999999999999999998753221 1 1366888885 345554443 333 34445 8999
Q ss_pred cccCCHHHHH
Q 008948 525 KGPIQDKKSI 534 (548)
Q Consensus 525 ~G~I~~~~~~ 534 (548)
.|+|+++..+
T Consensus 243 ~G~v~~~~l~ 252 (300)
T PTZ00319 243 TGYVDEEMLR 252 (300)
T ss_pred cceeCHHHHH
Confidence 9999987654
No 53
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.81 E-value=5.5e-19 Score=184.70 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=126.2
Q ss_pred cEEEEEEEEecC-----CEEEEEEECCCCcccCCCCEEEEEecCCC----CCeeeeeecccCCC-----CCeEEEEEEEc
Q 008948 339 AVSIQKVAVYPG-----NVLALHMSKPDRFRYKSGQYMFVNCAAVS----PFEWHPFSITSAPD-----DDYLSVHIRTL 404 (548)
Q Consensus 339 ~~~v~~v~~l~~-----~v~~l~l~~p~~~~~~pGQyv~L~~p~~~----~~e~hPFSIaS~p~-----~~~l~l~Ir~~ 404 (548)
..+|+..+.+.+ ++.+|++..+..+.|+||||+.|.+|+.. +...|||||+|+|. +++++|+||..
T Consensus 92 ~~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~ 171 (367)
T PLN03115 92 TGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 171 (367)
T ss_pred EEEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEE
Confidence 346666665544 89999998877899999999999987532 23579999999983 45899999975
Q ss_pred -----------CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCC-CCCCeEEEEEcccCHH
Q 008948 405 -----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY-KEYEVVLLVGLGIGAT 472 (548)
Q Consensus 405 -----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~-~~~~~vvlIagGiGIT 472 (548)
|..|+.|.+ + ++ ++.+.|.||+|.+.... ....++||||||+|||
T Consensus 172 ~y~~~~g~~~~G~~S~~L~~-L-------k~---------------Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIA 228 (367)
T PLN03115 172 VYTNDQGEIVKGVCSNFLCD-L-------KP---------------GAEVKITGPVGKEMLMPKDPNATIIMLATGTGIA 228 (367)
T ss_pred EeecCCCccCCeehHhhHhh-C-------CC---------------cCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHH
Confidence 445666654 2 12 58999999999875322 3446899999999999
Q ss_pred HHHHHHHHHHHhccc----------------Cc-HHHHHHHHhhhhcCC-CEE-EEEecCCCCCCCcccCccccCCHHHH
Q 008948 473 PMISIVKDIVNNMKA----------------IE-EEEENDLENGRDTGV-NTT-IIIIDNNYEPFFFWTQKKGPIQDKKS 533 (548)
Q Consensus 473 P~lsil~~l~~~~~~----------------~~-~~~~~eL~~l~~~~~-~~~-v~vt~~~~~~~~~w~g~~G~I~~~~~ 533 (548)
|++|++++++..... .+ ..+.+||++++++++ ++. .++.+++++. |.|.+|+|++.+.
T Consensus 229 P~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~---~~G~kgyVqd~i~ 305 (367)
T PLN03115 229 PFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTN---AKGEKMYIQTRMA 305 (367)
T ss_pred HHHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcc---cCCcceeehhHHH
Confidence 999999987543211 11 146799999977765 443 3455666666 8899999998776
Q ss_pred HHH
Q 008948 534 ILL 536 (548)
Q Consensus 534 ~~~ 536 (548)
+..
T Consensus 306 e~~ 308 (367)
T PLN03115 306 EYA 308 (367)
T ss_pred HHH
Confidence 543
No 54
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.81 E-value=3.5e-19 Score=190.27 Aligned_cols=170 Identities=17% Similarity=0.258 Sum_probs=129.5
Q ss_pred ccEEEEEEEEecCCEEEEEEECCC--CcccCCCCEEEEEecCC-----------------------------CCCeeeee
Q 008948 338 KAVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAV-----------------------------SPFEWHPF 386 (548)
Q Consensus 338 ~~~~v~~v~~l~~~v~~l~l~~p~--~~~~~pGQyv~L~~p~~-----------------------------~~~e~hPF 386 (548)
.+++|++++.+++++.+++++.+. ++.|+||||+.|.+|.. +...+|||
T Consensus 130 ~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 209 (405)
T TIGR01941 130 WECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAY 209 (405)
T ss_pred eeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceee
Confidence 457889999999999999999874 47899999999999743 12357999
Q ss_pred ecccCCC-CCeEEEEEEEc-----------CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCC
Q 008948 387 SITSAPD-DDYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ 454 (548)
Q Consensus 387 SIaS~p~-~~~l~l~Ir~~-----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~ 454 (548)
||+|.|. ++.++|+||.. |..|..|.+ + ++ ++.+.|.||+|.+..
T Consensus 210 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l-------~~---------------Gd~v~i~gP~G~f~l 266 (405)
T TIGR01941 210 SMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFS-L-------KP---------------GDKVTISGPFGEFFA 266 (405)
T ss_pred cCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhc-C-------CC---------------cCEEEEEeccCCCee
Confidence 9999996 46899999974 667777653 2 12 589999999999875
Q ss_pred CCCCCCeEEEEEcccCHHHHHHHHHHHHHhcc-cCc------------HHHHHHHHhhhhcCCCEEEE-EecCC--CCCC
Q 008948 455 DYKEYEVVLLVGLGIGATPMISIVKDIVNNMK-AIE------------EEEENDLENGRDTGVNTTII-IIDNN--YEPF 518 (548)
Q Consensus 455 ~~~~~~~vvlIagGiGITP~lsil~~l~~~~~-~~~------------~~~~~eL~~l~~~~~~~~v~-vt~~~--~~~~ 518 (548)
. ...+++||||||+||||++|++++++.+.. ..+ ..+.++++++.+++.+..++ +++++ ++.
T Consensus 267 ~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~- 344 (405)
T TIGR01941 267 K-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDN- 344 (405)
T ss_pred c-CCCCCEEEEecCcCcchHHHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCC-
Confidence 4 345789999999999999999998775422 111 13668999988777775444 33432 234
Q ss_pred CcccCccccCCHHHHH
Q 008948 519 FFWTQKKGPIQDKKSI 534 (548)
Q Consensus 519 ~~w~g~~G~I~~~~~~ 534 (548)
|.|.+|+|++.+.+
T Consensus 345 --~~g~~G~v~~~l~~ 358 (405)
T TIGR01941 345 --WTGYTGFIHNVLYE 358 (405)
T ss_pred --CCCccceeCHHHHH
Confidence 88999999987654
No 55
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.80 E-value=1.2e-18 Score=174.34 Aligned_cols=165 Identities=24% Similarity=0.360 Sum_probs=126.6
Q ss_pred cEEEEEEEEecCCEEEEEEECCCC-cccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEE--cCCcchHHHHH
Q 008948 339 AVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRT--LGDWTRQLRTV 414 (548)
Q Consensus 339 ~~~v~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~--~g~~T~~L~~~ 414 (548)
..+|.+++.+++++..++++.|.. +.++||||+.|+.|+ ...+|||++|.|+ ++.++++|+. .|..|+.+.+.
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhc
Confidence 378999999999999999998765 689999999999998 3799999999997 4556666655 78899888765
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhccc-------
Q 008948 415 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA------- 487 (548)
Q Consensus 415 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~------- 487 (548)
- + ++.+.+.||||++.......+++++||||+|++|+.++++++.++...
T Consensus 86 k--------~---------------gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~ 142 (252)
T COG0543 86 K--------E---------------GDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLY 142 (252)
T ss_pred c--------C---------------CCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEE
Confidence 1 2 478999999999986543455599999999999999999999985411
Q ss_pred ----CcH-HHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccC-CHHHHHHHhc
Q 008948 488 ----IEE-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPI-QDKKSILLLG 538 (548)
Q Consensus 488 ----~~~-~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I-~~~~~~~~~~ 538 (548)
.++ .+.++++++... ..+++++ ++ |.|.+|.+ ++.+.+....
T Consensus 143 G~~~~~dl~~~~el~~~~~~---~~~~~~~---~~---~~G~~G~v~~~~~~~~~~~ 190 (252)
T COG0543 143 GARTAKDLLLLDELEELAEK---EVHPVTD---DG---WKGRKGFVTTDVLKELLDL 190 (252)
T ss_pred eccChhhcccHHHHHHhhcC---cEEEEEC---CC---CCccCcceeHHHHhhhccc
Confidence 111 355888888654 2334444 44 88999999 5555554433
No 56
>PRK05713 hypothetical protein; Provisional
Probab=99.80 E-value=5.8e-19 Score=182.27 Aligned_cols=173 Identities=16% Similarity=0.233 Sum_probs=128.0
Q ss_pred ccEEEEEEEEecCCEEEEEEECCCCcccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEc--CCcchHHHHH
Q 008948 338 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTV 414 (548)
Q Consensus 338 ~~~~v~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~--g~~T~~L~~~ 414 (548)
.+++|++++.+++|+++++++.+..+.|+||||+.|.+++. .+|||||+|.|+ ++.++|+||.. |.+|+.|.+
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~~---~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~- 167 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAGG---VARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQ- 167 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCCC---cccccccCcCCCCCCeEEEEEEEcCCCccchhhhc-
Confidence 46899999999999999999987788999999999998642 589999999986 57899999954 667876632
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCC-CCCC-CCCeEEEEEcccCHHHHHHHHHHHHHhcccCc---
Q 008948 415 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPA-QDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE--- 489 (548)
Q Consensus 415 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~-~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~~~~~--- 489 (548)
+ ++ ++++.+.||+|... .+.. ..+++||||||+||||++||+++++++....+
T Consensus 168 l-------~~---------------Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~~~v~l 225 (312)
T PRK05713 168 L-------QV---------------GDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGHQGPIRL 225 (312)
T ss_pred C-------CC---------------CCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCCCCcEEE
Confidence 2 12 58999999998532 2222 45789999999999999999999987653322
Q ss_pred ---------HHHHHHHHhhhhcCCCEEEE-EecC------------CCCCCCcccCccccCCHHHHHHH
Q 008948 490 ---------EEEENDLENGRDTGVNTTII-IIDN------------NYEPFFFWTQKKGPIQDKKSILL 536 (548)
Q Consensus 490 ---------~~~~~eL~~l~~~~~~~~v~-vt~~------------~~~~~~~w~g~~G~I~~~~~~~~ 536 (548)
..+.++|++++++++++.+. ++++ +....+|-+|..++++.....+.
T Consensus 226 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vyiCGp~~mv~~~~~~L~ 294 (312)
T PRK05713 226 LHLARDSAGHYLAEPLAALAGRHPQLSVELVTAAQLPAALAELRLVSRQTMALLCGSPASVERFARRLY 294 (312)
T ss_pred EEEcCchHHhhhHHHHHHHHHHCCCcEEEEEECcchhhhhhhccCCCCCeEEEEeCCHHHHHHHHHHHH
Confidence 13679999998766664332 2221 11123567788888777665543
No 57
>PRK05802 hypothetical protein; Provisional
Probab=99.80 E-value=9.6e-19 Score=180.72 Aligned_cols=140 Identities=21% Similarity=0.294 Sum_probs=110.9
Q ss_pred ccEEEEEEEEecCCEEEEEEECCCC---cccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEcCCcchHHHH
Q 008948 338 KAVSIQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQLRT 413 (548)
Q Consensus 338 ~~~~v~~v~~l~~~v~~l~l~~p~~---~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~g~~T~~L~~ 413 (548)
..++|++++.+++++..++++.|.. ..++||||++|++|..+.+..|||||+|+|. ++.++++||..|..|+.|.+
T Consensus 65 ~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~L~~ 144 (320)
T PRK05802 65 YECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKKIAK 144 (320)
T ss_pred EeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHHHhc
Confidence 4688999999999999999998864 3479999999999876666789999999874 68899999999999988853
Q ss_pred HhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCC--CC---CCCCCeEEEEEcccCHHHHHHHHHHHHHhccc-
Q 008948 414 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPA--QD---YKEYEVVLLVGLGIGATPMISIVKDIVNNMKA- 487 (548)
Q Consensus 414 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~--~~---~~~~~~vvlIagGiGITP~lsil~~l~~~~~~- 487 (548)
+ ++ ++.+.|.||||... .. ....+++|+||||+||||++|+++++.++..+
T Consensus 145 l--------~~---------------Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~~~v 201 (320)
T PRK05802 145 L--------NK---------------GDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNGNKI 201 (320)
T ss_pred C--------CC---------------CCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcCCcE
Confidence 2 12 58999999997642 21 12356899999999999999999999876431
Q ss_pred --------CcH-HHHHHHHhhh
Q 008948 488 --------IEE-EEENDLENGR 500 (548)
Q Consensus 488 --------~~~-~~~~eL~~l~ 500 (548)
.++ .+.++|+++.
T Consensus 202 ~li~g~r~~~~~~~~~el~~~~ 223 (320)
T PRK05802 202 IVIIDKGPFKNNFIKEYLELYN 223 (320)
T ss_pred EEEEeCCCHHHHHHHHHHHHhh
Confidence 111 3567887764
No 58
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.79 E-value=4.3e-18 Score=169.79 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=102.2
Q ss_pred CEEEEEEECC-CCcccCCCCEEEEEecCCCCCeeeeeecccCCCCCeEEEEEEEcCC-------cchHHHHHhhhccCCC
Q 008948 351 NVLALHMSKP-DRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGD-------WTRQLRTVFSEVCRPP 422 (548)
Q Consensus 351 ~v~~l~l~~p-~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~~l~l~Ir~~g~-------~T~~L~~~~~~~~~~~ 422 (548)
++.+++++.+ ..+.|+||||+.|.++. ....|||||+|+|.++.++|+||..++ .|+.|.+..+
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~~------ 88 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPADGALELLVRQVRHADGGLGLGSGWLTRHAP------ 88 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCCCCEEEEEEEEeccCCCCCeeechhhhhCCC------
Confidence 5999999988 57899999999999764 346899999999988899999999754 6766655331
Q ss_pred CCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcc----------cC--cH
Q 008948 423 PNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK----------AI--EE 490 (548)
Q Consensus 423 ~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~----------~~--~~ 490 (548)
.++++.|.||.|..+......+++||||||+||||++|+++++..+.. +. +.
T Consensus 89 ----------------~Gd~v~i~gp~gg~F~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~l~~g~r~~~~d~ 152 (245)
T cd06200 89 ----------------IGASVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARAGRHRNWLLFGERQAAHDF 152 (245)
T ss_pred ----------------CCCEEEEEecCCCcccCCCCCCCEEEEecCcChHHHHHHHHHHHhccCCCeEEEEecCCccccH
Confidence 258999999876543322345789999999999999999999976532 11 12
Q ss_pred HHHHHHHhhhhcCCCE
Q 008948 491 EEENDLENGRDTGVNT 506 (548)
Q Consensus 491 ~~~~eL~~l~~~~~~~ 506 (548)
.+.+|++++.+.+.+.
T Consensus 153 ~~~~el~~~~~~~~~~ 168 (245)
T cd06200 153 FCREELEAWQAAGHLA 168 (245)
T ss_pred hHHHHHHHHHHCCCcc
Confidence 4779999987766653
No 59
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.77 E-value=8.3e-18 Score=169.79 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=113.2
Q ss_pred CCEEEEEEECC--CCcccCCCCEEEEEecCCCCCeeeeeecccCCCC--CeEEEEEEEc-----------CCcchHHHHH
Q 008948 350 GNVLALHMSKP--DRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD--DYLSVHIRTL-----------GDWTRQLRTV 414 (548)
Q Consensus 350 ~~v~~l~l~~p--~~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~--~~l~l~Ir~~-----------g~~T~~L~~~ 414 (548)
.+|.+++|+.| ..+.|+||||+.|.+|+ ....|||||+|.|++ +.++|+||.. |..|+.|.+
T Consensus 15 ~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~- 91 (267)
T cd06182 15 RSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG- 91 (267)
T ss_pred CceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh-
Confidence 57999999998 57899999999999875 346899999999864 8999999987 667777653
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEecccC-CCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHh----c----
Q 008948 415 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN----M---- 485 (548)
Q Consensus 415 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~----~---- 485 (548)
+ ++ ++.+.+.||+| .+..+....+++|+||||+||||++|++++++.. .
T Consensus 92 l-------k~---------------Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~ 149 (267)
T cd06182 92 L-------QL---------------GAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGP 149 (267)
T ss_pred C-------CC---------------CCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCC
Confidence 2 12 58999999999 7765444457899999999999999999999862 1
Q ss_pred -------cc--CcHHHHHHHHhhhhcCCCEEEE-EecCCCCCCCcccCccccCCHHHH
Q 008948 486 -------KA--IEEEEENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKS 533 (548)
Q Consensus 486 -------~~--~~~~~~~eL~~l~~~~~~~~v~-vt~~~~~~~~~w~g~~G~I~~~~~ 533 (548)
+. .+..+.++|+++.+.+.+..++ +.++++ . +..|+|++.+.
T Consensus 150 v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~~S~~~-~-----~~~~~v~~~l~ 201 (267)
T cd06182 150 AWLFFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQ-A-----EPKVYVQDKLK 201 (267)
T ss_pred EEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEEEccCC-C-----CCceehHHHHH
Confidence 11 1224679999987765554333 344322 2 23566665543
No 60
>PLN02252 nitrate reductase [NADPH]
Probab=99.77 E-value=1e-17 Score=192.35 Aligned_cols=174 Identities=15% Similarity=0.222 Sum_probs=132.9
Q ss_pred cccccEEEEEEEEecCCEEEEEEECCCC---cccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEc------
Q 008948 335 SSIKAVSIQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL------ 404 (548)
Q Consensus 335 ~~~~~~~v~~v~~l~~~v~~l~l~~p~~---~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~------ 404 (548)
..+.+++|++++.+++++..++|+.|.+ +.++||||++|.++..+....||||++|.|+ +++++|+||.+
T Consensus 632 ~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~ 711 (888)
T PLN02252 632 REKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHP 711 (888)
T ss_pred CceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccC
Confidence 3456789999999999999999998754 5789999999998755555789999999986 57999999987
Q ss_pred -----CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCC--------C--CCCCCeEEEEEccc
Q 008948 405 -----GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ--------D--YKEYEVVLLVGLGI 469 (548)
Q Consensus 405 -----g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~--------~--~~~~~~vvlIagGi 469 (548)
|..|+.|.+ + + .++.+.|.||+|.+.. + ....++++|||||+
T Consensus 712 ~~p~gG~~S~~L~~-L-------~---------------vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGs 768 (888)
T PLN02252 712 KFPNGGLMSQYLDS-L-------P---------------IGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGT 768 (888)
T ss_pred ccCCCCchhhHHhc-C-------C---------------CCCEEEEecCccceeecccceeeeccccccCceEEEEecce
Confidence 557766632 2 1 2589999999998531 1 12357899999999
Q ss_pred CHHHHHHHHHHHHHhcccC-c------------HHHHHHHHhhhhcCCC-E-EEEEecCCC-CCCCcccCccccCCHHHH
Q 008948 470 GATPMISIVKDIVNNMKAI-E------------EEEENDLENGRDTGVN-T-TIIIIDNNY-EPFFFWTQKKGPIQDKKS 533 (548)
Q Consensus 470 GITP~lsil~~l~~~~~~~-~------------~~~~~eL~~l~~~~~~-~-~v~vt~~~~-~~~~~w~g~~G~I~~~~~ 533 (548)
||||+++++++++.+..+. + ..+.+||+++++++++ + ..++++++. ++ |.|.+|+|++++.
T Consensus 769 GITPi~silr~ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~---w~g~~GrV~~~ll 845 (888)
T PLN02252 769 GITPMYQVIQAILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREG---WKYSVGRVTEAML 845 (888)
T ss_pred ehhHHHHHHHHHHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCC---CCCcCCcCCHHHH
Confidence 9999999999998653211 1 1367999999877643 3 445555543 55 9999999999865
Q ss_pred H
Q 008948 534 I 534 (548)
Q Consensus 534 ~ 534 (548)
+
T Consensus 846 ~ 846 (888)
T PLN02252 846 R 846 (888)
T ss_pred H
Confidence 4
No 61
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.77 E-value=1.2e-17 Score=178.10 Aligned_cols=168 Identities=14% Similarity=0.159 Sum_probs=122.3
Q ss_pred ccEEEEEEEEec-----CCEEEEEEECCC-CcccCCCCEEEEEecCCC----CCeeeeeecccCCCC-----CeEEEEEE
Q 008948 338 KAVSIQKVAVYP-----GNVLALHMSKPD-RFRYKSGQYMFVNCAAVS----PFEWHPFSITSAPDD-----DYLSVHIR 402 (548)
Q Consensus 338 ~~~~v~~v~~l~-----~~v~~l~l~~p~-~~~~~pGQyv~L~~p~~~----~~e~hPFSIaS~p~~-----~~l~l~Ir 402 (548)
...+|++++.++ ++|.+|+++.+. .+.|+||||+.|.+|+.. +..+|||||+|+|++ +.++|+||
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk 222 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVK 222 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEE
Confidence 457889999984 499999999876 689999999999988532 246799999998742 47999999
Q ss_pred Ec----------CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCC-CCCCCCeEEEEEcccCH
Q 008948 403 TL----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ-DYKEYEVVLLVGLGIGA 471 (548)
Q Consensus 403 ~~----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~-~~~~~~~vvlIagGiGI 471 (548)
.+ |..|+.|.+ + ++ ++++.+.||+|.++. +....+++||||||+||
T Consensus 223 ~v~~~~~g~~~~G~~S~~L~~-l-------k~---------------Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGI 279 (411)
T TIGR03224 223 RVTTDHQGNAVRGVASNYLCD-L-------KK---------------GDKVQVIGPFGSTFLMPNHPESSIMMICTGTGS 279 (411)
T ss_pred EEEecCCCCcCcccchhHHhc-C-------CC---------------cCEEEEEeccCCcccCCCCCCCCEEEEecccCc
Confidence 87 556776655 2 12 589999999998553 22234689999999999
Q ss_pred HHHHHHHHHHHHhc---ccCc------------HHHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHHH
Q 008948 472 TPMISIVKDIVNNM---KAIE------------EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSIL 535 (548)
Q Consensus 472 TP~lsil~~l~~~~---~~~~------------~~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~~ 535 (548)
||++|+++++.... ...+ ..+.++|+++.+..++..+ +.+.+++ +.+|+|++.+.+.
T Consensus 280 AP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~~~~~~-~~sr~~~------~~~g~V~d~l~~~ 351 (411)
T TIGR03224 280 APMRAMTERRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDFIDINF-AFSRTPE------QPKRYVQDAIRER 351 (411)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhcCceEEE-EeccCCc------cCcccHhhHHHHh
Confidence 99999999987531 1111 1367899988766655444 3333222 3568888866553
No 62
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.75 E-value=2.6e-17 Score=164.71 Aligned_cols=173 Identities=17% Similarity=0.241 Sum_probs=143.5
Q ss_pred ccccEEEEEEEEecCCEEEEEEECCC---CcccCCCCEEEEEecCCCCCeeeeeecccCCCC-CeEEEEEEEc--CCcch
Q 008948 336 SIKAVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTR 409 (548)
Q Consensus 336 ~~~~~~v~~v~~l~~~v~~l~l~~p~---~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~-~~l~l~Ir~~--g~~T~ 409 (548)
.+...++.+.+.+++|+..++|..|. .+....|||+++..|..+....||||..|.+.+ +++++.||.+ |..|+
T Consensus 50 ~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534|consen 50 SYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred ceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCcccH
Confidence 36788899999999999999999884 467899999999999887888999999998876 7999999988 55666
Q ss_pred HHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCc
Q 008948 410 QLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE 489 (548)
Q Consensus 410 ~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~ 489 (548)
.|.++ + .++.+.+.||.|....+...++++.+||||+||||+++++++++.+..+..
T Consensus 130 ~l~~L--------k---------------iGd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d~t 186 (286)
T KOG0534|consen 130 HLDSL--------K---------------IGDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPEDTT 186 (286)
T ss_pred HHhcC--------C---------------CCCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCCCc
Confidence 55432 2 258999999999987655668999999999999999999999998765422
Q ss_pred -------------HHHHHHHHhhhhcCCC-E-EEEEecCCCCCCCcccCccccCCHHHHH
Q 008948 490 -------------EEEENDLENGRDTGVN-T-TIIIIDNNYEPFFFWTQKKGPIQDKKSI 534 (548)
Q Consensus 490 -------------~~~~~eL~~l~~~~~~-~-~v~vt~~~~~~~~~w~g~~G~I~~~~~~ 534 (548)
..+.+||+.++.++++ + ..++++.+.+. |++..|+|++++..
T Consensus 187 ki~lly~N~te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~---w~~~~g~It~~~i~ 243 (286)
T KOG0534|consen 187 KISLLYANKTEDDILLREELEELASKYPERFKVWYVVDQPPEI---WDGSVGFITKDLIK 243 (286)
T ss_pred EEEEEEecCCccccchHHHHHHHHhhCcceEEEEEEEcCCccc---ccCccCccCHHHHH
Confidence 2578999999988884 4 44667777777 99999999998665
No 63
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.75 E-value=3.2e-17 Score=159.40 Aligned_cols=131 Identities=16% Similarity=0.212 Sum_probs=103.0
Q ss_pred EEEEecCCEEEEEEECCCCc---ccCCCCEEEEEecCCCCCeeeeeecccCCCC-CeEEEEEEEcCC---cchHHHHHhh
Q 008948 344 KVAVYPGNVLALHMSKPDRF---RYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTLGD---WTRQLRTVFS 416 (548)
Q Consensus 344 ~v~~l~~~v~~l~l~~p~~~---~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~-~~l~l~Ir~~g~---~T~~L~~~~~ 416 (548)
+++.+++++++++++.|... .|+||||+.|++|.. ..|||||+|.|.+ +.+.|+||..++ .|..|.+..
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~~---~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~- 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPNG---LVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELL- 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCCC---CceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcC-
Confidence 56788999999999998753 899999999999862 6899999999875 899999998763 566655432
Q ss_pred hccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhccc---------
Q 008948 417 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA--------- 487 (548)
Q Consensus 417 ~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~--------- 487 (548)
+ .++++.|.||+|.+..+. ..+++++||||+||||++|+++++....++
T Consensus 78 ------~---------------~Gd~v~i~gP~g~f~~~~-~~~~~v~ia~GtGiap~~~il~~~~~~~~~v~l~~~~r~ 135 (211)
T cd06185 78 ------R---------------VGDELEVSAPRNLFPLDE-AARRHLLIAGGIGITPILSMARALAARGADFELHYAGRS 135 (211)
T ss_pred ------C---------------CCCEEEEcCCccCCcCCC-CCCcEEEEeccchHhHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 1 258999999999876542 457899999999999999999999864321
Q ss_pred Cc-HHHHHHHHhhh
Q 008948 488 IE-EEEENDLENGR 500 (548)
Q Consensus 488 ~~-~~~~~eL~~l~ 500 (548)
.+ ..+.++|+++.
T Consensus 136 ~~~~~~~~~l~~~~ 149 (211)
T cd06185 136 REDAAFLDELAALP 149 (211)
T ss_pred CcchhHHHHHhhhc
Confidence 11 13568888875
No 64
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.74 E-value=4e-17 Score=187.39 Aligned_cols=162 Identities=23% Similarity=0.379 Sum_probs=126.0
Q ss_pred EEEEEEEEecCCEEEEEEECCC-CcccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEcCCcchHHHHHhhh
Q 008948 340 VSIQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQLRTVFSE 417 (548)
Q Consensus 340 ~~v~~v~~l~~~v~~l~l~~p~-~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~g~~T~~L~~~~~~ 417 (548)
++|++++.+++++..++++.|. ...++||||+.|+++..+ +.|||||+|.|. +++++|+||..|..|+.|.++
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l--- 76 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADPEKGTITLVIQEVGLSTTKLCEL--- 76 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcC---
Confidence 3688899999999999999875 357999999999998654 579999999874 678999999999999988642
Q ss_pred ccCCCCCCCcccccccCCCCCCCCEE-EEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhccc---------
Q 008948 418 VCRPPPNGISGLLRAEGHNNPDFPRV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA--------- 487 (548)
Q Consensus 418 ~~~~~~~g~~~~~~~~~~~~~~~~~v-~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~--------- 487 (548)
++ ++.+ .|.||||.++.. ...++++|||||+||||++++++++..+..+
T Consensus 77 -----~~---------------Gd~v~~v~GP~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~~~~v~l~~g~r~ 135 (752)
T PRK12778 77 -----NE---------------GDYITDVVGPLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAAGNRVITILGGRS 135 (752)
T ss_pred -----CC---------------CCEeCeEeCCCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 12 5789 799999998753 3457899999999999999999999875432
Q ss_pred CcH-HHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHHHHh
Q 008948 488 IEE-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLL 537 (548)
Q Consensus 488 ~~~-~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~~~~ 537 (548)
.+. .+.++|+++..+ ++++++ ++ |.|.+|++++.+.+.+.
T Consensus 136 ~~~l~~~~el~~~~~~-----~~~~t~--dg---~~g~~G~v~~~l~~~~~ 176 (752)
T PRK12778 136 KELIILEDEMRESSDE-----VIIMTD--DG---SYGRKGLVTDGLEEVIK 176 (752)
T ss_pred HHHhhhHHHHHhhcCe-----EEEEEC--CC---CCCCcccHHHHHHHHhh
Confidence 111 355888776432 233333 23 67999999988777654
No 65
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.74 E-value=1.2e-16 Score=163.29 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=113.3
Q ss_pred ccccEEEEEEEEec----CCEEEEEEECCC-------CcccCCCCEEEEEecCCCCCeeeeeecccCCCCCeEEEEEEE-
Q 008948 336 SIKAVSIQKVAVYP----GNVLALHMSKPD-------RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRT- 403 (548)
Q Consensus 336 ~~~~~~v~~v~~l~----~~v~~l~l~~p~-------~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~~~l~l~Ir~- 403 (548)
.+.++++++.+.++ +++..++|+.|+ ...|+||||+.|..++.. ..|||||+|+|+++.++|+||.
T Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~~--~~R~YSias~p~~g~l~l~Vk~~ 121 (289)
T cd06201 44 RTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGSD--VPRFYSLASSSSDGFLEICVRKH 121 (289)
T ss_pred CccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCCC--CCceEecCCCCCCCeEEEEEEeC
Confidence 45678899999988 599999999876 467999999999866432 5799999999988899999998
Q ss_pred -cCCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEec-ccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHH
Q 008948 404 -LGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDG-PYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDI 481 (548)
Q Consensus 404 -~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~G-PyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l 481 (548)
.|..|+.|.+ + ++ ++.+.+.+ |+|.+..+ ...+++||||||+||||++|++++.
T Consensus 122 ~~G~~S~~L~~-l-------~~---------------Gd~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~ 177 (289)
T cd06201 122 PGGLCSGYLHG-L-------KP---------------GDTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRAN 177 (289)
T ss_pred CCccchhhHhh-C-------CC---------------cCEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhh
Confidence 4678887764 3 12 47888874 78887653 4457899999999999999999986
Q ss_pred HHh--------cccC--cHHHHHHHHhhhhcCCCEEE
Q 008948 482 VNN--------MKAI--EEEEENDLENGRDTGVNTTI 508 (548)
Q Consensus 482 ~~~--------~~~~--~~~~~~eL~~l~~~~~~~~v 508 (548)
... .++. +..+.+||+++.+++.+..+
T Consensus 178 ~~~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~ 214 (289)
T cd06201 178 AARRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQL 214 (289)
T ss_pred hccCCEEEEEEecCcccchHHHHHHHHHHHcCCCceE
Confidence 322 1222 23578999999777665433
No 66
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.71 E-value=2.8e-16 Score=182.61 Aligned_cols=173 Identities=14% Similarity=0.149 Sum_probs=128.3
Q ss_pred ccccEEEEEEEEecCCEEEEEEECCCC-cccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEcCCcchHHHH
Q 008948 336 SIKAVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQLRT 413 (548)
Q Consensus 336 ~~~~~~v~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~g~~T~~L~~ 413 (548)
....++|++++.+++++..++++.|.. ..++||||+.|.++..+ +.|||||+|.|. +++++++||..|..|..|.+
T Consensus 647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~~ 724 (944)
T PRK12779 647 GQIPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAEKGTIDLVVQGMGTSSLEINR 724 (944)
T ss_pred cceEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCCCCEEEEEEEeeccHHHHHhc
Confidence 356789999999999999999998764 47999999999986544 579999999874 68899999999988876643
Q ss_pred HhhhccCCCCCCCcccccccCCCCCCCCEEE-EecccCCCCCCC--CCCCeEEEEEcccCHHHHHHHHHHHHHhccc---
Q 008948 414 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVL-IDGPYGAPAQDY--KEYEVVLLVGLGIGATPMISIVKDIVNNMKA--- 487 (548)
Q Consensus 414 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~-I~GPyG~~~~~~--~~~~~vvlIagGiGITP~lsil~~l~~~~~~--- 487 (548)
+ ++ ++.+. |.||+|.++... ...+++||||||+||||++|+++++.+...+
T Consensus 725 -l-------k~---------------Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g~~V~l 781 (944)
T PRK12779 725 -M-------AI---------------GDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLGNHVTL 781 (944)
T ss_pred -C-------CC---------------cCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCCCCEEE
Confidence 2 12 57884 999999986311 2236899999999999999999998875421
Q ss_pred ------CcHHH-HH---HHHhhhhcCCC-EEEEEecCCCCCCCcccCccccCCHHHHHHHhc
Q 008948 488 ------IEEEE-EN---DLENGRDTGVN-TTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLG 538 (548)
Q Consensus 488 ------~~~~~-~~---eL~~l~~~~~~-~~v~vt~~~~~~~~~w~g~~G~I~~~~~~~~~~ 538 (548)
.+..+ .+ +++++++...+ ..+++++++ + |.|.+|+|++.+.+.+.+
T Consensus 782 i~G~Rs~edl~~~del~~L~~la~~~~~~~~v~~ttdd--g---s~G~~G~Vt~~l~~ll~~ 838 (944)
T PRK12779 782 ISGFRAKEFLFWTGDDERVGKLKAEFGDQLDVIYTTND--G---SFGVKGFVTGPLEEMLKA 838 (944)
T ss_pred EEEeCCHHHhhhHHHHHHHHHHHHHcCCCeEEEEEecC--C---CCCCccccChHHHHHHHh
Confidence 12233 23 45556555554 455555443 3 668999999987766544
No 67
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.69 E-value=5.5e-16 Score=181.64 Aligned_cols=164 Identities=18% Similarity=0.270 Sum_probs=125.8
Q ss_pred EEEEEEEEecCCEEEEEEECCC-CcccCCCCEEEEEecCCCCCeeeeeecccCC-CCCeEEEEEEEcCCcchHHHHHhhh
Q 008948 340 VSIQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSE 417 (548)
Q Consensus 340 ~~v~~v~~l~~~v~~l~l~~p~-~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p-~~~~l~l~Ir~~g~~T~~L~~~~~~ 417 (548)
.+|++.+.+++++..+++..|. ...++|||||.|+++..+ +.+||||++.+ +++++++.+|..|..|+.|.+.++
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~--errplSIa~~~~~~g~i~l~vk~vG~~T~~L~~~lk- 78 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGA--ERIPLTVADFDRKKGTITMVVQALGKTTREMMTKFK- 78 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCC--eeEEEEecCcCCCCCEEEEEEEecCcHHHHHHhcCC-
Confidence 3688899999999999999886 467999999999997543 67999999876 467899999999999998864331
Q ss_pred ccCCCCCCCcccccccCCCCCCCCEE-EEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccC--------
Q 008948 418 VCRPPPNGISGLLRAEGHNNPDFPRV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-------- 488 (548)
Q Consensus 418 ~~~~~~~g~~~~~~~~~~~~~~~~~v-~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~-------- 488 (548)
+ ++.+ .+.||+|.++. ....+++||||||+||||++|+++.+.+...+.
T Consensus 79 ------~---------------Gd~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~g~~v~li~g~R~ 136 (1006)
T PRK12775 79 ------A---------------GDTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEAGARTTGIIGFRN 136 (1006)
T ss_pred ------C---------------CCEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 2 4787 79999999864 334578999999999999999999988764321
Q ss_pred -cH-HHHHHHHhhhhcCCCEEEEEecCCCCCCCcccCccccCCHHHHHHHhc
Q 008948 489 -EE-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLG 538 (548)
Q Consensus 489 -~~-~~~~eL~~l~~~~~~~~v~vt~~~~~~~~~w~g~~G~I~~~~~~~~~~ 538 (548)
+. .+.++++.+.. .+++++++ + |.|.+|+|++.+.+++..
T Consensus 137 ~~~l~~~del~~~~~-----~~~v~tdd--g---s~G~~G~vt~~l~~~l~~ 178 (1006)
T PRK12775 137 KDLVFWEDKFGKYCD-----DLIVCTDD--G---SYGKPGFVTAALKEVCEK 178 (1006)
T ss_pred hHHcccHHHHHhhcC-----cEEEEECC--C---CCCCCCChHHHHHHHhcc
Confidence 11 24577766532 13444333 3 668999999988777654
No 68
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.66 E-value=2.7e-15 Score=178.92 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=128.9
Q ss_pred ccccEEEEEEE---EecCCEEEEEEECCCC---cccCCCCEEEEEecCCCCCeeeeeecccCCC-CCeEEEEEEEc-CCc
Q 008948 336 SIKAVSIQKVA---VYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL-GDW 407 (548)
Q Consensus 336 ~~~~~~v~~v~---~l~~~v~~l~l~~p~~---~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~-~~~l~l~Ir~~-g~~ 407 (548)
.|.+++|.+++ ..++++..++|..|.. +.|+|||||.|.++..+.-..|+||++|.|+ ++.++|+||.. |..
T Consensus 913 ~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~~~G~~ 992 (1167)
T PTZ00306 913 KWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGTL 992 (1167)
T ss_pred ceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEcCCChh
Confidence 46678888886 4578999999988753 4799999999998644434579999999996 46799999974 667
Q ss_pred chHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCC----------CCCCCCCCeEEEEEcccCHHHHHHH
Q 008948 408 TRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP----------AQDYKEYEVVLLVGLGIGATPMISI 477 (548)
Q Consensus 408 T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~----------~~~~~~~~~vvlIagGiGITP~lsi 477 (548)
|..|.+ + ++ ++.+.|.||+|.. ..+....+++||||||+||||++||
T Consensus 993 S~~L~~-l-------~~---------------Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sm 1049 (1167)
T PTZ00306 993 KEWISA-L-------RP---------------GDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQI 1049 (1167)
T ss_pred HHHHhh-C-------CC---------------CCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHH
Confidence 877742 2 12 5899999998831 1122345789999999999999999
Q ss_pred HHHHHHhcc--cC-------------cHHHHHHHHhhhhcCCC-EEE-EEecCCCCCCCcccCccccCCHHHHH
Q 008948 478 VKDIVNNMK--AI-------------EEEEENDLENGRDTGVN-TTI-IIIDNNYEPFFFWTQKKGPIQDKKSI 534 (548)
Q Consensus 478 l~~l~~~~~--~~-------------~~~~~~eL~~l~~~~~~-~~v-~vt~~~~~~~~~w~g~~G~I~~~~~~ 534 (548)
+++++++.. +. +..+.+||+++++++++ +.+ +++++++++ |.+..|+|+++..+
T Consensus 1050 l~~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~---w~~~~G~i~~~~l~ 1120 (1167)
T PTZ00306 1050 IRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEG---WTDGVGFVDRALLQ 1120 (1167)
T ss_pred HHHHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcc---cCCCCCCCCHHHHH
Confidence 999987531 11 12467999999877764 443 455655666 89999999987543
No 69
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.61 E-value=4.9e-15 Score=146.84 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=97.0
Q ss_pred EEEEEEecCCEEEEEEECCCC---cccCCCCEEEEEecCCC-------------------CCeeeeeecccCC-CCCeEE
Q 008948 342 IQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVS-------------------PFEWHPFSITSAP-DDDYLS 398 (548)
Q Consensus 342 v~~v~~l~~~v~~l~l~~p~~---~~~~pGQyv~L~~p~~~-------------------~~e~hPFSIaS~p-~~~~l~ 398 (548)
|++++.+++++++|+++.|.. ..|+||||+.|.+|..+ ....|+|||++.| ++++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 457888999999999998864 67999999999998643 4678999999986 578999
Q ss_pred EEEEEc---CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHH
Q 008948 399 VHIRTL---GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMI 475 (548)
Q Consensus 399 l~Ir~~---g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~l 475 (548)
|.|+.. |..|+.+.+ + ++ ++.+.+.||+|.+..+. ..+++||||||+||||++
T Consensus 81 ~~v~~~~~~G~~s~~l~~-l-------~~---------------Gd~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~ 136 (235)
T cd06193 81 IDFVLHGDEGPASRWAAS-A-------QP---------------GDTLGIAGPGGSFLPPP-DADWYLLAGDETALPAIA 136 (235)
T ss_pred EEEEeCCCCCchHHHHhh-C-------CC---------------CCEEEEECCCCCCCCCC-CcceEEEEeccchHHHHH
Confidence 999887 446666532 2 12 58999999999987643 457899999999999999
Q ss_pred HHHHHHHHh
Q 008948 476 SIVKDIVNN 484 (548)
Q Consensus 476 sil~~l~~~ 484 (548)
||++++...
T Consensus 137 ~il~~~~~~ 145 (235)
T cd06193 137 AILEELPAD 145 (235)
T ss_pred HHHHhCCCC
Confidence 999988654
No 70
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.44 E-value=2.1e-13 Score=121.19 Aligned_cols=117 Identities=26% Similarity=0.445 Sum_probs=85.7
Q ss_pred hhhHHHHHhhhhhh-hhhccccccccccccCcchhhHHHHHHHHHHHHHHHHHhhhhccccceeeecCccccCCCCcccC
Q 008948 147 FNMALILLPVCRNT-ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFG 225 (548)
Q Consensus 147 ~n~~lill~~~Rn~-it~Lr~~~~l~~~ip~d~~~~fHk~ig~~~~~~~~iH~~~hl~~~f~~~~~~~~~~~~~~~~~~~ 225 (548)
.|+++++++.+||+ +..++ ++|+|+.+.+|||+|+++++++++|++.|+.... .. + ..
T Consensus 7 ~~l~~~~~l~~R~~~l~~~~-------~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~-~~---~--~~-------- 65 (125)
T PF01794_consen 7 ALLPLVFLLGLRNSPLARLT-------GISFDRLLRFHRWLGRLAFFLALLHGVLYLINWL-RF---G--GW-------- 65 (125)
T ss_pred HHHHHHHHHHHhhhHHHHHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---h--hh--------
Confidence 46677777789996 44333 5899999999999999999999999999984211 10 0 00
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHHHHhcchhhhhccCCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 008948 226 DQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLL 295 (548)
Q Consensus 226 ~~~~~~~~~~~~~~g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~~ll 295 (548)
..+........+....+|+++++++.++.++|.+++||+. .||.|+++|++++++++++
T Consensus 66 ~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~-----------~ye~f~~~H~~~~~~~~l~ 124 (125)
T PF01794_consen 66 DWQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRR-----------NYEIFYYLHILFYIAFLLA 124 (125)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHH
Confidence 0001111223344567999999999999999999999542 7999999999998877654
No 71
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.38 E-value=2.1e-12 Score=110.29 Aligned_cols=92 Identities=27% Similarity=0.467 Sum_probs=75.2
Q ss_pred cEEEEEEEEecCCEEEEEEECCC---CcccCCCCEEEEEecCCCCCeeeeeecccCCCC-CeEEEEEEEc--CCcchHHH
Q 008948 339 AVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLR 412 (548)
Q Consensus 339 ~~~v~~v~~l~~~v~~l~l~~p~---~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~~-~~l~l~Ir~~--g~~T~~L~ 412 (548)
+++|++++.+++++..++|+.|. .+.++||||+.|.++..+...+||||++|.|.+ +.++|+||.. |..|+.|.
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHH
Confidence 36899999999999999999874 357999999999999555567999999999974 5999999999 66788775
Q ss_pred HHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCC
Q 008948 413 TVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPA 453 (548)
Q Consensus 413 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~ 453 (548)
+ ++ + ++++.+.||+|.+.
T Consensus 81 ~-l~-------~---------------Gd~v~i~gP~G~f~ 98 (99)
T PF00970_consen 81 Q-LK-------P---------------GDEVEIRGPYGNFT 98 (99)
T ss_dssp T-SC-------T---------------TSEEEEEEEESSEE
T ss_pred h-CC-------C---------------CCEEEEEEcccccC
Confidence 4 31 2 58999999999863
No 72
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.31 E-value=9e-12 Score=121.72 Aligned_cols=179 Identities=16% Similarity=0.278 Sum_probs=119.5
Q ss_pred cEEEEEEEEecCCEEEEEEECCC--CcccCCCCEEEEEecCCC--------------CC---------------eeeeee
Q 008948 339 AVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVS--------------PF---------------EWHPFS 387 (548)
Q Consensus 339 ~~~v~~v~~l~~~v~~l~l~~p~--~~~~~pGQyv~L~~p~~~--------------~~---------------e~hPFS 387 (548)
.++|.+.....-=+.+|++..|+ ...|+||-|+.|.+|.-. .| ..+.||
T Consensus 136 ectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYS 215 (410)
T COG2871 136 ECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYS 215 (410)
T ss_pred eEEEEeCCchhhhhhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhh
Confidence 34444443333346778888776 467999999999998430 01 126789
Q ss_pred cccCCCC-CeEEEEEEEcCC-cchHHHHHhhhccCCCCCCC-cccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEE
Q 008948 388 ITSAPDD-DYLSVHIRTLGD-WTRQLRTVFSEVCRPPPNGI-SGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLL 464 (548)
Q Consensus 388 IaS~p~~-~~l~l~Ir~~g~-~T~~L~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvl 464 (548)
++|-|++ +.+.|-||..-. .... ...+|+ |.+.- ..+.+++|.|.||||.++.. +....+|+
T Consensus 216 mAsYPeE~giI~~NvRIAtPPp~~~----------~~PpG~mSSyi~----sLKpGDKvtisGPfGEfFaK-dtdaemvF 280 (410)
T COG2871 216 MASYPEEKGIIKLNVRIATPPPRNP----------DAPPGQMSSYIW----SLKPGDKVTISGPFGEFFAK-DTDAEMVF 280 (410)
T ss_pred hhcChhhcCeEEEEEEeccCCCCCC----------CCCccceeeeEE----eecCCCeEEEeccchhhhhc-cCCCceEE
Confidence 9998864 677888886532 1000 001121 00000 01236999999999998753 34567999
Q ss_pred EEcccCHHHHHHHHHHHHHhcccCc-------------HHHHHHHHhhhhcCCCEEEEE-ecCC-CCCCCcccCccccCC
Q 008948 465 VGLGIGATPMISIVKDIVNNMKAIE-------------EEEENDLENGRDTGVNTTIII-IDNN-YEPFFFWTQKKGPIQ 529 (548)
Q Consensus 465 IagGiGITP~lsil~~l~~~~~~~~-------------~~~~~eL~~l~~~~~~~~v~v-t~~~-~~~~~~w~g~~G~I~ 529 (548)
|+||.|.+|+.|.+-|.+.+.+..+ ..+.++.++|+++++|++.|+ ++++ +++ +|+|.+|+|.
T Consensus 281 igGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpED--nW~g~TgFih 358 (410)
T COG2871 281 IGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPED--NWDGYTGFIH 358 (410)
T ss_pred EecCcCcCchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCCcC--CcccchhHHH
Confidence 9999999999999988887644332 236689999999999966654 4443 333 4999999999
Q ss_pred HHHHH
Q 008948 530 DKKSI 534 (548)
Q Consensus 530 ~~~~~ 534 (548)
.++.+
T Consensus 359 nv~~e 363 (410)
T COG2871 359 NVLYE 363 (410)
T ss_pred HHHHh
Confidence 88766
No 73
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.29 E-value=4.7e-11 Score=136.42 Aligned_cols=119 Identities=18% Similarity=0.311 Sum_probs=94.9
Q ss_pred cEEEEEEEEecCCEEEEEEECCCC-cccCCCCEEEEEecCCC--CC-eeeeeecccCC-CCCeEEEEEEEcCCcchHHHH
Q 008948 339 AVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVS--PF-EWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRT 413 (548)
Q Consensus 339 ~~~v~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~L~~p~~~--~~-e~hPFSIaS~p-~~~~l~l~Ir~~g~~T~~L~~ 413 (548)
..+|++++.++++++.++++.|.. -.++||||+.|+.++.+ .. +..||||++.+ +++++++.+|.+|..|+.|.+
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT~~Ls~ 871 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKSTSLCKT 871 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHHHHHhc
Confidence 457999999999999999998863 36899999999986432 22 45799999876 467899999999999988865
Q ss_pred HhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHh
Q 008948 414 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 484 (548)
Q Consensus 414 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~ 484 (548)
+- + ++.+.+.||+|.++. ..+++++++||||+|++| +++.+.++
T Consensus 872 l~--------~---------------Gd~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp---Lak~Lk~~ 915 (1028)
T PRK06567 872 LS--------E---------------NEKVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG---LLKVLKEN 915 (1028)
T ss_pred CC--------C---------------CCEEEEEcccCCCCC-CCCCCeEEEEEccccHHH---HHHHHHHC
Confidence 32 2 478999999999875 334678999999999997 44655543
No 74
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.28 E-value=1.1e-11 Score=130.49 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=87.2
Q ss_pred CcccCCCCEEEEEecCCCCCeeeeeecccCCC--CCeEEEEEEEc----------CCcchHHHHHhhhccCCCCCCCccc
Q 008948 362 RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGL 429 (548)
Q Consensus 362 ~~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~--~~~l~l~Ir~~----------g~~T~~L~~~~~~~~~~~~~g~~~~ 429 (548)
..++.||||+.+..| . ..|+|||+|+|. ++.++++|+.+ |-.|+.|.+..+
T Consensus 129 ~~~~~~gq~l~l~~~-~---~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~------------- 191 (360)
T cd06199 129 PARLTAEELLDLLRP-L---QPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLK------------- 191 (360)
T ss_pred CCCCCHHHHHHhCcC-C---CCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCC-------------
Confidence 357899999998744 2 579999999995 47899999865 555665554321
Q ss_pred ccccCCCCCCCCEEEEeccc-CCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhccc-------------CcHHHHHH
Q 008948 430 LRAEGHNNPDFPRVLIDGPY-GAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-------------IEEEEEND 495 (548)
Q Consensus 430 ~~~~~~~~~~~~~v~I~GPy-G~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~-------------~~~~~~~e 495 (548)
.++.+.+.+|. |.+..+.....++||||||+||||++|++++....... .+..+.+|
T Consensus 192 ---------~Gd~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~D~~y~~e 262 (360)
T cd06199 192 ---------EGDTVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGAKGKNWLFFGERHFATDFLYQDE 262 (360)
T ss_pred ---------CCCEEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccCCCcEEEEEcCCCCccchhHHHH
Confidence 25789998755 46665444457899999999999999999987654221 12247799
Q ss_pred HHhhhhcCCCEE
Q 008948 496 LENGRDTGVNTT 507 (548)
Q Consensus 496 L~~l~~~~~~~~ 507 (548)
|+++++.+....
T Consensus 263 l~~~~~~~~~~~ 274 (360)
T cd06199 263 LQQWLKDGVLTR 274 (360)
T ss_pred HHHHHHcCCCeE
Confidence 999987665543
No 75
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.27 E-value=1.2e-11 Score=138.28 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=98.3
Q ss_pred cccCCCCEEEEEecCCCCCeeeeeecccCCC--CCeEEEEEEEc----------CCcchHHHHHhhhccCCCCCCCcccc
Q 008948 363 FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLL 430 (548)
Q Consensus 363 ~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~--~~~l~l~Ir~~----------g~~T~~L~~~~~~~~~~~~~g~~~~~ 430 (548)
+++.||||+.+..|. ..|||||+|+|. ++.++++|+.+ |..|..|.+.++ +
T Consensus 367 ~~~~~gq~v~ll~~~----~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~-------~------ 429 (597)
T TIGR01931 367 ADLDAEQLISLLRPL----TPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLK-------E------ 429 (597)
T ss_pred CCCCHHHHHHhCccc----CCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCC-------C------
Confidence 578999999988762 679999999994 57899999865 777877765431 2
Q ss_pred cccCCCCCCCCEEEEecccC-CCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccC-------------cHHHHHHH
Q 008948 431 RAEGHNNPDFPRVLIDGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-------------EEEEENDL 496 (548)
Q Consensus 431 ~~~~~~~~~~~~v~I~GPyG-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~-------------~~~~~~eL 496 (548)
++.+.|.||.| .+..+.....++||||||+|||||+|++++........ +..+.+||
T Consensus 430 ---------Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~g~~~LffG~R~~~~D~ly~~El 500 (597)
T TIGR01931 430 ---------GDTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGAKGKNWLFFGNPHFTTDFLYQVEW 500 (597)
T ss_pred ---------CCEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccCCCCEEEEECCCCCCcchhHHHHH
Confidence 47899998655 56554444568999999999999999999987653211 22477999
Q ss_pred HhhhhcCCCEEEE-EecCCCCCCCcccCccccCCHHHHH
Q 008948 497 ENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKSI 534 (548)
Q Consensus 497 ~~l~~~~~~~~v~-vt~~~~~~~~~w~g~~G~I~~~~~~ 534 (548)
+.+.+.+....+. ..+++. +.+|+|++.+.+
T Consensus 501 ~~~~~~~~l~~l~~afSRd~-------~~k~yVqd~l~e 532 (597)
T TIGR01931 501 QNYLKKGVLTKMDLAFSRDQ-------AEKIYVQHRIRE 532 (597)
T ss_pred HHHHHcCCCceeEEEEecCC-------CCCccHHHHHHH
Confidence 9887666543332 223321 345677666554
No 76
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.18 E-value=1.9e-10 Score=122.86 Aligned_cols=134 Identities=17% Similarity=0.157 Sum_probs=92.2
Q ss_pred CCeeeeeecccCCCC--CeEEEEEEEc-----CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEec-ccCC
Q 008948 380 PFEWHPFSITSAPDD--DYLSVHIRTL-----GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDG-PYGA 451 (548)
Q Consensus 380 ~~e~hPFSIaS~p~~--~~l~l~Ir~~-----g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~G-PyG~ 451 (548)
..+.|+|||+|+|.. +.++++|+.. |-.|+.|.++.+.. + ..++.+.+.| |.|.
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~------~------------~~G~~v~i~~~~~g~ 232 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSA------S------------SHGVKVPFYLRSSSR 232 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhh------c------------CCCCEEEEEEecCCC
Confidence 347899999999954 7899999875 44777776654210 0 0157899998 6777
Q ss_pred CCCCCC-CCCeEEEEEcccCHHHHHHHHHHHHHhc------c-----------cC--cHHHHHHHHhhhhcCCCEE-EEE
Q 008948 452 PAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNM------K-----------AI--EEEEENDLENGRDTGVNTT-III 510 (548)
Q Consensus 452 ~~~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~------~-----------~~--~~~~~~eL~~l~~~~~~~~-v~v 510 (548)
+..+.. ...++||||||+|||||+|++++..... . .. +..+.+||+++.+.+.... ..+
T Consensus 233 F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a 312 (398)
T cd06203 233 FRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVA 312 (398)
T ss_pred cCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEE
Confidence 765433 3578999999999999999999876521 1 11 1246799999987666543 333
Q ss_pred ecCCCCCCCcccCccccCCHHHHHH
Q 008948 511 IDNNYEPFFFWTQKKGPIQDKKSIL 535 (548)
Q Consensus 511 t~~~~~~~~~w~g~~G~I~~~~~~~ 535 (548)
.+.+++. | |.+|+|++.+.+.
T Consensus 313 ~SRd~~~---~-g~k~yVqd~l~~~ 333 (398)
T cd06203 313 FSRDEND---G-STPKYVQDKLEER 333 (398)
T ss_pred ECCCCCC---C-CCceecchHHHhC
Confidence 4444443 3 6789998876653
No 77
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.17 E-value=1.9e-10 Score=122.23 Aligned_cols=106 Identities=18% Similarity=0.176 Sum_probs=77.2
Q ss_pred CCeeeeeecccCCC--CCeEEEEEEEc-----------CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEe
Q 008948 380 PFEWHPFSITSAPD--DDYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLID 446 (548)
Q Consensus 380 ~~e~hPFSIaS~p~--~~~l~l~Ir~~-----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~ 446 (548)
..+.|||||+|+|. ++.++++|+.. |-.|+.|.+ + ..++++.+.
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l----------------------~~Gd~v~v~ 217 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAG-L----------------------KVGQRVTVF 217 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhh-c----------------------CCCCEEEEE
Confidence 34789999999995 47899999976 444544432 1 125799999
Q ss_pred cccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHh----cc-----------c--CcHHHHHHHHhhhhcCCCEEE
Q 008948 447 GPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN----MK-----------A--IEEEEENDLENGRDTGVNTTI 508 (548)
Q Consensus 447 GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~----~~-----------~--~~~~~~~eL~~l~~~~~~~~v 508 (548)
||+|.+..+.....++||||||+|||||+|++++.... .. + .+..+.+|++++.+.+....+
T Consensus 218 ~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~ 296 (382)
T cd06207 218 IKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTL 296 (382)
T ss_pred EECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceE
Confidence 99998775444457899999999999999999987532 11 1 112477999999876665433
No 78
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.09 E-value=3.3e-10 Score=120.46 Aligned_cols=135 Identities=10% Similarity=0.093 Sum_probs=87.2
Q ss_pred cCCCCEEEEEecCCCCCeeeeeecccCCC--CCeEEEEEEE------------cCCcchHHHHHhhhccCCCCCCCcccc
Q 008948 365 YKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRT------------LGDWTRQLRTVFSEVCRPPPNGISGLL 430 (548)
Q Consensus 365 ~~pGQyv~L~~p~~~~~e~hPFSIaS~p~--~~~l~l~Ir~------------~g~~T~~L~~~~~~~~~~~~~g~~~~~ 430 (548)
...||++.+. |.+ +.|||||+|+|. ++.+++.|+. .|..|+.|.+ + ++
T Consensus 147 ~~~~~~l~~~-p~l---~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~-l-------~~------ 208 (384)
T cd06206 147 LPLATFLAML-PPM---RPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSS-L-------RP------ 208 (384)
T ss_pred CCHHHHHHhC-ccc---CCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhh-C-------CC------
Confidence 3568888776 543 679999999985 4556666654 3445666643 2 12
Q ss_pred cccCCCCCCCCEEE--EecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHh---cc------------cC--cHH
Q 008948 431 RAEGHNNPDFPRVL--IDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN---MK------------AI--EEE 491 (548)
Q Consensus 431 ~~~~~~~~~~~~v~--I~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~---~~------------~~--~~~ 491 (548)
++.+. +.||+|.+..+....+++||||||+||||++|++++.... .. .. +..
T Consensus 209 ---------Gd~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~l 279 (384)
T cd06206 209 ---------GDSIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDL 279 (384)
T ss_pred ---------CCeEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccc
Confidence 35665 5799999876544567899999999999999999987642 11 11 224
Q ss_pred HHHHHHhhhhcCCCEEE-EEecCCCCCCCcccCccccCCHHHH
Q 008948 492 EENDLENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKS 533 (548)
Q Consensus 492 ~~~eL~~l~~~~~~~~v-~vt~~~~~~~~~w~g~~G~I~~~~~ 533 (548)
|.+|++++++. .+..+ .+.++++++ .+|+|++.+.
T Consensus 280 y~~el~~~~~~-~~~~l~~a~Sr~~~~------~~~yVq~~i~ 315 (384)
T cd06206 280 YRDELEEWEAA-GVVSVRRAYSRPPGG------GCRYVQDRLW 315 (384)
T ss_pred hHHHHHHHHHC-CCeEEEEEecccCCC------CCEechhhHH
Confidence 77999998753 34333 334433221 3566666543
No 79
>PRK06214 sulfite reductase; Provisional
Probab=99.05 E-value=1.6e-09 Score=118.62 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=74.2
Q ss_pred CCCeeeeeecccCCC--CCeEEEEEEEc----------CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEE-
Q 008948 379 SPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLI- 445 (548)
Q Consensus 379 ~~~e~hPFSIaS~p~--~~~l~l~Ir~~----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I- 445 (548)
.+.+.|||||+|+|. ++.++|+|+.+ |..|+.|.+.+ ++ ++.+.|
T Consensus 312 p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l-------~~---------------Gd~V~v~ 369 (530)
T PRK06214 312 DPLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERL-------AP---------------GTRVRVY 369 (530)
T ss_pred CCCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcC-------CC---------------CCEEEEE
Confidence 345789999999995 57899999865 55566665433 12 355555
Q ss_pred -ecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcc-----------cC--cHHHHHHHHhhhhcCCCEEE
Q 008948 446 -DGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK-----------AI--EEEEENDLENGRDTGVNTTI 508 (548)
Q Consensus 446 -~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~-----------~~--~~~~~~eL~~l~~~~~~~~v 508 (548)
.+|+| +..+.....++||||+|+|||||+|++++...... +. +..|.+||+++.+.+....+
T Consensus 370 i~~~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l 445 (530)
T PRK06214 370 VQKAHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATKAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRL 445 (530)
T ss_pred ecCCCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcCCCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEE
Confidence 56777 65443445689999999999999999998664321 11 12477999999877665433
No 80
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.02 E-value=8.2e-10 Score=123.14 Aligned_cols=117 Identities=11% Similarity=0.075 Sum_probs=82.9
Q ss_pred cccCCCCEEEEEecCCCCCeeeeeecccCCC--CCeEEEEEEEc----------CCcchHHHHHhhhccCCCCCCCcccc
Q 008948 363 FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLL 430 (548)
Q Consensus 363 ~~~~pGQyv~L~~p~~~~~e~hPFSIaS~p~--~~~l~l~Ir~~----------g~~T~~L~~~~~~~~~~~~~g~~~~~ 430 (548)
.++.||||+.+..|- +.|+|||+|+|. ++.+.+.|+.+ |..|..|.+..
T Consensus 370 ~~~~~~q~l~ll~~l----~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l--------------- 430 (600)
T PRK10953 370 AQLDAEQLIGLLRPL----TPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRL--------------- 430 (600)
T ss_pred CCCCHHHHHHhCCCC----CCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcC---------------
Confidence 468999999887652 579999999994 45677766443 22344343222
Q ss_pred cccCCCCCCCCEEEEecccC-CCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhcccC-------------cHHHHHHH
Q 008948 431 RAEGHNNPDFPRVLIDGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-------------EEEEENDL 496 (548)
Q Consensus 431 ~~~~~~~~~~~~v~I~GPyG-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~-------------~~~~~~eL 496 (548)
..++++.|.||.| .+..+.....++||||+|+|||||+|++++........ +-.|.+|+
T Consensus 431 -------~~Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~LffG~R~~~~D~lY~~El 503 (600)
T PRK10953 431 -------EEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEW 503 (600)
T ss_pred -------CCCCEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCCCCCeEEEeeccCCccchhHHHHH
Confidence 1257899999886 55544445578999999999999999999887653221 22577999
Q ss_pred HhhhhcCCC
Q 008948 497 ENGRDTGVN 505 (548)
Q Consensus 497 ~~l~~~~~~ 505 (548)
+++.+.+.-
T Consensus 504 ~~~~~~g~l 512 (600)
T PRK10953 504 QRYVKEGLL 512 (600)
T ss_pred HHHHHcCCc
Confidence 999776654
No 81
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=98.91 E-value=1.1e-08 Score=109.88 Aligned_cols=126 Identities=16% Similarity=0.145 Sum_probs=78.5
Q ss_pred CCeeeeeecccCCC--CCeEEEEEEEc-----------CCcchHHHHHhhhccC-CCCCCCcccccccCCCCCCCCEEEE
Q 008948 380 PFEWHPFSITSAPD--DDYLSVHIRTL-----------GDWTRQLRTVFSEVCR-PPPNGISGLLRAEGHNNPDFPRVLI 445 (548)
Q Consensus 380 ~~e~hPFSIaS~p~--~~~l~l~Ir~~-----------g~~T~~L~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~v~I 445 (548)
..+.|+|||+|+|. .+.+++.|+.+ |-.|+.|.+....... ..... ..+.. ..+...++.+.+
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~--~~~~~-~~~~~~g~~v~v 251 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTP--YYLSG-PRKKGGGSKVPV 251 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccc--ccccc-ccccCCCCeEEE
Confidence 34789999999995 46788888754 4456666554421000 00000 00000 000113688999
Q ss_pred ecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhc---c------------cC--cHHHHHHHHhhhhcCCCEEE
Q 008948 446 DGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM---K------------AI--EEEEENDLENGRDTGVNTTI 508 (548)
Q Consensus 446 ~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~---~------------~~--~~~~~~eL~~l~~~~~~~~v 508 (548)
.+|.|.+..+.....++||||||+||||++|++++..... . .. +..+.+|++++.+.+.+..+
T Consensus 252 ~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~~~l 331 (416)
T cd06204 252 FVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGLLEL 331 (416)
T ss_pred EEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCCceEE
Confidence 9999987655444578999999999999999999864321 1 11 12477999999776655444
No 82
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=98.86 E-value=1.9e-08 Score=107.74 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=80.9
Q ss_pred CeeeeeecccCCC--CCeEEEEEEEc-------------CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEE
Q 008948 381 FEWHPFSITSAPD--DDYLSVHIRTL-------------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLI 445 (548)
Q Consensus 381 ~e~hPFSIaS~p~--~~~l~l~Ir~~-------------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I 445 (548)
...|||||+|+|. ++.+.+.|+.+ |-.|+.|.++ ++ ++.+.+
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l--------~~---------------Gd~v~v 231 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGL--------TP---------------GDTVPC 231 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhC--------CC---------------CCEEEE
Confidence 3689999999995 46777777653 4445545321 12 478888
Q ss_pred ecccC-CCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHHhc-------------------ccC--cHHHHHHHHhhhhcC
Q 008948 446 DGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM-------------------KAI--EEEEENDLENGRDTG 503 (548)
Q Consensus 446 ~GPyG-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~-------------------~~~--~~~~~~eL~~l~~~~ 503 (548)
.+|.| .+..+.....++||||+|+|||||+|++++..... +.. +..|.+|++++.+.+
T Consensus 232 ~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~ 311 (406)
T cd06202 232 FVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKG 311 (406)
T ss_pred EEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcC
Confidence 77543 45443344578999999999999999999854221 111 224779999997766
Q ss_pred CCEEE-EEecCCCCCCCcccCccccCCHHHHHH
Q 008948 504 VNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSIL 535 (548)
Q Consensus 504 ~~~~v-~vt~~~~~~~~~w~g~~G~I~~~~~~~ 535 (548)
....+ .+.+++++ +.+|+|++.+.+.
T Consensus 312 ~~~~~~~a~SR~~~------~~k~yVq~~l~~~ 338 (406)
T cd06202 312 VLTEVYTALSREPG------KPKTYVQDLLKEQ 338 (406)
T ss_pred CCceEEEEEcCCCC------CCCeehhhHHHHh
Confidence 65433 33443322 2467787766543
No 83
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.77 E-value=4.2e-08 Score=95.67 Aligned_cols=135 Identities=17% Similarity=0.160 Sum_probs=95.3
Q ss_pred cccccEEEEEEEEecCCEEEEEEECCCC----cccCCCCEEEEEec--CCCC--CeeeeeecccCCCCCeEEEEEEEcCC
Q 008948 335 SSIKAVSIQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCA--AVSP--FEWHPFSITSAPDDDYLSVHIRTLGD 406 (548)
Q Consensus 335 ~~~~~~~v~~v~~l~~~v~~l~l~~p~~----~~~~pGQyv~L~~p--~~~~--~e~hPFSIaS~p~~~~l~l~Ir~~g~ 406 (548)
..+.+++|++.+..++||.++++.+..+ ....|||||.+... +.+. ..-+.+|..++...+.+.+.+|...+
T Consensus 147 ~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~ 226 (385)
T KOG3378|consen 147 DGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAG 226 (385)
T ss_pred CCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehhc
Confidence 3456788999999999999999975332 35789999998763 3332 12234555555567889999998854
Q ss_pred cchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCC---CCCCCeEEEEEcccCHHHHHHHHHHHHH
Q 008948 407 WTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQD---YKEYEVVLLVGLGIGATPMISIVKDIVN 483 (548)
Q Consensus 407 ~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~---~~~~~~vvlIagGiGITP~lsil~~l~~ 483 (548)
+..++.. +. +.+.++.+.++.|-|.+... ......+++.|||+||||.++|++..+.
T Consensus 227 ------G~VS~~~-----------H~---~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~ 286 (385)
T KOG3378|consen 227 ------GVVSNFV-----------HD---NLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL 286 (385)
T ss_pred ------hhhHHHh-----------hc---cccccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh
Confidence 2332211 00 12346899999999998632 2344789999999999999999998887
Q ss_pred hcccCc
Q 008948 484 NMKAIE 489 (548)
Q Consensus 484 ~~~~~~ 489 (548)
-+.+++
T Consensus 287 C~~~RP 292 (385)
T KOG3378|consen 287 CYSSRP 292 (385)
T ss_pred cCCCCc
Confidence 666655
No 84
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=98.49 E-value=2.1e-07 Score=80.43 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=54.2
Q ss_pred EEEcccCHHHHHHHHHHHHHhcccCc------------HHHHHHHHhhhhcCCC-EEEEEecCCCCCCCcccCccccCCH
Q 008948 464 LVGLGIGATPMISIVKDIVNNMKAIE------------EEEENDLENGRDTGVN-TTIIIIDNNYEPFFFWTQKKGPIQD 530 (548)
Q Consensus 464 lIagGiGITP~lsil~~l~~~~~~~~------------~~~~~eL~~l~~~~~~-~~v~vt~~~~~~~~~w~g~~G~I~~ 530 (548)
|||||+||||++|++++++.+....+ ..+.++++++++..++ ..++.++++.++ |.+..|+|++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~v~~ 77 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYVSSPDDG---WDGFKGRVTD 77 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEETTTTSS---TTSEESSHHH
T ss_pred CeecceeHHHHHHHHHHHHHhCCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccccccccc---cCCceeehhH
Confidence 79999999999999999997633222 1477999999887776 444444555555 8899999999
Q ss_pred HHHHHHhc
Q 008948 531 KKSILLLG 538 (548)
Q Consensus 531 ~~~~~~~~ 538 (548)
.+.+.+..
T Consensus 78 ~~~~~~~~ 85 (109)
T PF00175_consen 78 LLLEDLLP 85 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhcc
Confidence 98664443
No 85
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.07 E-value=5.1e-06 Score=76.63 Aligned_cols=58 Identities=24% Similarity=0.368 Sum_probs=40.1
Q ss_pred CCeEEEEEcccCHHHHHHHHHHHHHhcccCc------------------HHHHHHHHhh---hhc-CCCEEEEEecCCCC
Q 008948 459 YEVVLLVGLGIGATPMISIVKDIVNNMKAIE------------------EEEENDLENG---RDT-GVNTTIIIIDNNYE 516 (548)
Q Consensus 459 ~~~vvlIagGiGITP~lsil~~l~~~~~~~~------------------~~~~~eL~~l---~~~-~~~~~v~vt~~~~~ 516 (548)
|+++||||||+||||++|+++++++..++.. +|+.++|.++ ... +++..+|+|+++..
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~ 80 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSA 80 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT----
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCccc
Confidence 7899999999999999999999988765111 2566555443 334 45578888876543
No 86
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=97.87 E-value=0.0001 Score=81.81 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=68.7
Q ss_pred CeeeeeecccCCC--CCeEEEEEEEcCC--cchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccC-CCCCC
Q 008948 381 FEWHPFSITSAPD--DDYLSVHIRTLGD--WTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYG-APAQD 455 (548)
Q Consensus 381 ~e~hPFSIaS~p~--~~~l~l~Ir~~g~--~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG-~~~~~ 455 (548)
...|=|||+|+|. ++.++++|..+.- +.+.-++.. |+++.... ..++.+.|..+-+ .+..+
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~Gvc-----------S~~L~~~~---~~g~~i~v~v~~n~nf~lp 436 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVC-----------SGYLADLL---EEGDTIPVFVQPNKNFRLP 436 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccc-----------hHHHHhhh---cCCCeEEEEeccCCccccC
Confidence 3568899999996 4667777765531 111011111 11111110 1146777777666 34433
Q ss_pred CCCCCeEEEEEcccCHHHHHHHHHHHHHhcccCcH-------------HHHHHHHhhhhcCCC
Q 008948 456 YKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE-------------EEENDLENGRDTGVN 505 (548)
Q Consensus 456 ~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~-------------~~~~eL~~l~~~~~~ 505 (548)
.+...+++|||.|+||+||.++++.-..+....+. .+.+|+++....+..
T Consensus 437 ~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~ 499 (587)
T COG0369 437 EDPETPIIMIGPGTGIAPFRAFVQERAANGAEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVL 499 (587)
T ss_pred CCCCCceEEEcCCCCchhHHHHHHHHHhccccCceEEEecCCCCccchhhHHHHHHHHhcCCc
Confidence 33448899999999999999999998777654322 467899987666644
No 87
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=97.52 E-value=0.00021 Score=79.52 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=35.9
Q ss_pred CCCCeEEEEEcccCHHHHHHHHHHHHHhcccC----------------c--HHHHHHHHhhhhcCCC
Q 008948 457 KEYEVVLLVGLGIGATPMISIVKDIVNNMKAI----------------E--EEEENDLENGRDTGVN 505 (548)
Q Consensus 457 ~~~~~vvlIagGiGITP~lsil~~l~~~~~~~----------------~--~~~~~eL~~l~~~~~~ 505 (548)
+...+++|||-|+||+||.+.+++........ + ..+.+|+++..+.+..
T Consensus 489 dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l 555 (645)
T KOG1158|consen 489 DPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGIL 555 (645)
T ss_pred CCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcc
Confidence 34568999999999999999999987663322 1 1467888887554444
No 88
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=97.51 E-value=0.0005 Score=66.68 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=81.4
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHhhhhccccceeeecCccccCCCCcccCCCCCccccccccchhHHHHHHHHHHHHH
Q 008948 174 VPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIA 253 (548)
Q Consensus 174 ip~d~~~~fHk~ig~~~~~~~~iH~~~hl~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i~ 253 (548)
.+.|+.+.+||++|..+++.+.+|...++..+. .++ ....++ +..+...-+.|.+++++++.+
T Consensus 68 ~~~~~l~~~RR~LGl~af~~a~lH~~~y~~~~~---------~~~-~~~~~~-------~i~~~~~i~~G~ia~~lLl~L 130 (205)
T PRK05419 68 TGQPLLIRTRRLLGLWAFFYATLHLLSYLLLDL---------GLD-WSLLGK-------EIVKRPYITVGMAAFLILLPL 130 (205)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------ccc-HHHHHH-------HHHhchHHHHHHHHHHHHHHH
Confidence 455789999999999999999999987763211 110 000000 111111234578888788888
Q ss_pred HHhcchhhhhccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhccccccccccccceeeehhhHHHHHHHHHHHHHHh
Q 008948 254 FTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRAL 333 (548)
Q Consensus 254 ~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~~ll~~H~~~~~l~~~w~~~~~w~~~~~~~~ly~~dr~~R~~ 333 (548)
.++|..+.||+- +| .|...|.+..+++++.++|-.... ..+. .....|.++ ++.++.-|+.+..
T Consensus 131 aiTS~~~~~rrL-----------g~-~Wk~LH~l~Y~a~~L~~~H~~~~~-k~~~--~~~~~y~~~-~~~ll~~R~~~~~ 194 (205)
T PRK05419 131 ALTSTRASQRRL-----------GK-RWQKLHRLVYLIAILAPLHYLWSV-KSDS--PEPLIYAAI-VAVLLALRLKKLR 194 (205)
T ss_pred HHHhhHHHHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHHh-cccc--ccHHHHHHH-HHHHHHHHHHHHH
Confidence 889999988862 57 799999998888888899944221 1111 233456544 4555666777665
No 89
>COG2717 Predicted membrane protein [Function unknown]
Probab=96.86 E-value=0.0043 Score=59.67 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=84.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhccccceeeecCccccCCCCcccCCCCCccccccccchhHHHHHHHHHHHHHHHhc
Q 008948 178 DNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLA 257 (548)
Q Consensus 178 ~~~~fHk~ig~~~~~~~~iH~~~hl~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i~~~~s 257 (548)
..+.+-|.+|..+++.+++|...|+..+ -+++ ....+. +...-.....|++++++|..+.++|
T Consensus 72 ~l~~~Rr~LGl~af~~~~lH~~~Y~~~~---------l~~~-~~~~~~-------d~~~rpyitiG~iaflll~pLalTS 134 (209)
T COG2717 72 KLIRIRRALGLWAFFYALLHFTAYLVLD---------LGLD-LALLGL-------DLLKRPYITIGMIAFLLLIPLALTS 134 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------Hhcc-HHHhhH-------HHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999997422 1121 111110 1122233567999999999999999
Q ss_pred chhhhhccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhccccccccccccceeeehhhHHHHHHHHHHHHHHh
Q 008948 258 TPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRAL 333 (548)
Q Consensus 258 ~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~~ll~~H~~~~~l~~~w~~~~~w~~~~~~~~ly~~dr~~R~~ 333 (548)
..++||+- + ..|...|.+..+++++..+|-.... +.. ....+.|.++ .+.|.+.|+.+..
T Consensus 135 ~k~~~rrl-----------G-~rW~~LHrLvYl~~~L~~lH~~~s~--K~~-~~~~vlY~ii-~~~lll~R~~k~~ 194 (209)
T COG2717 135 FKWVRRRL-----------G-KRWKKLHRLVYLALILGALHYLWSV--KID-MPEPVLYAII-FAVLLLLRVTKTR 194 (209)
T ss_pred hHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHhc--Ccc-chHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999972 6 7788999999999999999976421 111 1234456554 5677788887765
No 90
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.81 E-value=0.0013 Score=42.98 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.6
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 27 ALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 27 ~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
..+|+..|.|++|+|+++||...|.+
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 56899999999999999999998864
No 91
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=96.21 E-value=0.011 Score=63.01 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=56.7
Q ss_pred EEEEEecCCCCCeeeeeecccCCCCCeEEEEEEEcCCcchHHH----HHhhhccCCCCCCCcccccccCCCCCCCCEEEE
Q 008948 370 YMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLR----TVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLI 445 (548)
Q Consensus 370 yv~L~~p~~~~~e~hPFSIaS~p~~~~l~l~Ir~~g~~T~~L~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I 445 (548)
|+.=-+|.+ ..|.|||+|+|....+++.|-.+.= +..|+ ++.+.-..++++| +.+.+
T Consensus 358 yl~d~~P~I---rPR~fSIas~~~~~~leL~VAiV~y-kT~l~~pRrGlCS~wl~sL~~g---------------~~i~~ 418 (574)
T KOG1159|consen 358 YLLDLLPVI---RPRAFSIASSPGAHHLELLVAIVEY-KTILKEPRRGLCSNWLASLKPG---------------DEIPI 418 (574)
T ss_pred HHHHhcccc---ccceeeeccCCCCCceeEEEEEEEE-eeeccccccchhHHHHhhcCCC---------------CeEEE
Confidence 333344555 5799999999998888877654421 11111 1122211122333 33333
Q ss_pred ecccCCCCCCCCCCCeEEEEEcccCHHHHHHHHHHHHH
Q 008948 446 DGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVN 483 (548)
Q Consensus 446 ~GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~ 483 (548)
.===|....+......++|||-|+|+||+.|++++-+.
T Consensus 419 ~v~~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~ 456 (574)
T KOG1159|consen 419 KVRPGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIY 456 (574)
T ss_pred EEecCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHh
Confidence 32225544333335689999999999999999998764
No 92
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.11 Score=52.15 Aligned_cols=126 Identities=11% Similarity=0.121 Sum_probs=86.8
Q ss_pred ccccEEEEEEEEecCCEEEEEEECCCCccc---CC-CCEEEEEecCCCC--------------------CeeeeeecccC
Q 008948 336 SIKAVSIQKVAVYPGNVLALHMSKPDRFRY---KS-GQYMFVNCAAVSP--------------------FEWHPFSITSA 391 (548)
Q Consensus 336 ~~~~~~v~~v~~l~~~v~~l~l~~p~~~~~---~p-GQyv~L~~p~~~~--------------------~e~hPFSIaS~ 391 (548)
+.+.++|+.++.++++..++++..|....+ .+ +||+.|-+|..+. .-.|+|||.+.
T Consensus 16 ~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~ 95 (265)
T COG2375 16 RLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAV 95 (265)
T ss_pred cceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeee
Confidence 346789999999999999999999874332 44 4599999976421 12688999754
Q ss_pred -CCCCeE--EEEEEEc-CCcchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCCCCCCCCCCeEEEEEc
Q 008948 392 -PDDDYL--SVHIRTL-GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGL 467 (548)
Q Consensus 392 -p~~~~l--~l~Ir~~-g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~~~~~~~~~~vvlIag 467 (548)
++...+ .|.+-.. |.-+.-- ..+ ..++.+.|-||-|.... ...++..+|+|=
T Consensus 96 d~~~~e~~vDfVlH~~~gpas~WA-~~a----------------------~~GD~l~i~GP~g~~~p-~~~~~~~lLigD 151 (265)
T COG2375 96 DAAAGELDVDFVLHGEGGPASRWA-RTA----------------------QPGDTLTIMGPRGSLVP-PEAADWYLLIGD 151 (265)
T ss_pred cccccEEEEEEEEcCCCCcchhhH-hhC----------------------CCCCEEEEeCCCCCCCC-CCCcceEEEecc
Confidence 344444 3333312 2211110 111 12689999999999654 457889999999
Q ss_pred ccCHHHHHHHHHHHHHhc
Q 008948 468 GIGATPMISIVKDIVNNM 485 (548)
Q Consensus 468 GiGITP~lsil~~l~~~~ 485 (548)
=+++..+..||+++-...
T Consensus 152 etAlPAIa~iLE~lp~~~ 169 (265)
T COG2375 152 ETALPAIARILETLPADT 169 (265)
T ss_pred ccchHHHHHHHHhCCCCC
Confidence 999999999999876543
No 93
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.67 E-value=0.014 Score=36.69 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.3
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHH
Q 008948 27 ALIMEELDPDHLGCIMIDNLEMLL 50 (548)
Q Consensus 27 ~~~~e~~d~~~~g~i~~~~l~~~l 50 (548)
...|+.+|.|++|.|+.+|+++++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 357999999999999999999864
No 94
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.53 E-value=0.017 Score=55.16 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=36.9
Q ss_pred chhhHHHHHHHHHHhcCCCCCCceeHHHHHHHHhcCccc
Q 008948 18 IQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 56 (548)
Q Consensus 18 ~~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~~~~~ 56 (548)
++||+++.++.+|+|+|.|++|.|+|||+...+.+.|..
T Consensus 141 ~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~ 179 (187)
T KOG0034|consen 141 SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDL 179 (187)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccH
Confidence 899999999999999999999999999999999988654
No 95
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=95.31 E-value=0.17 Score=44.60 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=51.7
Q ss_pred EEEEEEEecCCEEEEEEECCCC--cc-cCCCCEEEEEecCCCCC---------------------eeeeeecccC-CCCC
Q 008948 341 SIQKVAVYPGNVLALHMSKPDR--FR-YKSGQYMFVNCAAVSPF---------------------EWHPFSITSA-PDDD 395 (548)
Q Consensus 341 ~v~~v~~l~~~v~~l~l~~p~~--~~-~~pGQyv~L~~p~~~~~---------------------e~hPFSIaS~-p~~~ 395 (548)
+|++++.++++..++++..+.- +. ..+|||+.|.+|..+.- ..+.||+-+. |+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 5788999999999999998753 32 47999999999865321 4688999875 5667
Q ss_pred eEEEEEEEcCC---cchHHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEecccCCC
Q 008948 396 YLSVHIRTLGD---WTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP 452 (548)
Q Consensus 396 ~l~l~Ir~~g~---~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~I~GPyG~~ 452 (548)
++.+-+-..|+ -+.-. ..+ ++ ++++.|-||-|++
T Consensus 81 ~l~iDfv~Hg~~Gpas~WA-~~A-------~p---------------Gd~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDEGPASRWA-RSA-------RP---------------GDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS--HHHHHH-HH---------T---------------T-EEEEEEEE---
T ss_pred EEEEEEEECCCCCchHHHH-hhC-------CC---------------CCEEEEeCCCCCC
Confidence 77776666664 22222 111 12 5899999998864
No 96
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=95.11 E-value=0.033 Score=43.26 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 008948 19 QKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 50 (548)
Q Consensus 19 ~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~~l 50 (548)
+++.++.++.+|+.+|+|++|.|+|+||...+
T Consensus 35 ~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 35 DEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 78899999999999999999999999998753
No 97
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=94.88 E-value=0.028 Score=37.02 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 27 ALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 27 ~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
..+|+..|.|++|+|+.+||...|.+
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 45899999999999999999999873
No 98
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=94.12 E-value=0.066 Score=39.86 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 26 AALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 26 ~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
+..||..+|+|++|+|+|+||...+..
T Consensus 27 ~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 27 VDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 888999999999999999999998753
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=92.48 E-value=0.17 Score=31.04 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=22.8
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 27 ALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 27 ~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
..+|+..|+|++|+|+++||...+.+
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 35889999999999999999998754
No 100
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=91.86 E-value=0.21 Score=37.08 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLLL 51 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l~ 51 (548)
|+||..+|+++|.+++|.++-+|++.-..
T Consensus 20 ~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 20 DEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 68999999999999999999999987553
No 101
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=90.42 E-value=0.4 Score=43.36 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=36.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCCCceeHHHHHHHHhcCccc
Q 008948 16 SNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 56 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~~~~~ 56 (548)
..++|+.+-.++.+.||+|-|++|.+.+.|||.+..+.|.-
T Consensus 141 eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDF 181 (189)
T KOG0038|consen 141 ELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDF 181 (189)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcch
Confidence 35678889999999999999999999999999998876643
No 102
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=89.68 E-value=0.38 Score=40.48 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
++-...||+++|.|++|.|+|+||..++..
T Consensus 52 ~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 52 PMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 345777999999999999999999998864
No 103
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.16 E-value=0.5 Score=40.99 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=28.2
Q ss_pred chhhHHHHHHHHHHhcCCCCCCceeHHHHHH
Q 008948 18 IQKQAEEYAALIMEELDPDHLGCIMIDNLEM 48 (548)
Q Consensus 18 ~~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~ 48 (548)
++..++.+++.++.+.|.|++|+|+|-|+-.
T Consensus 111 sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 111 SEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred CHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 5778999999999999999999999998753
No 104
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=88.14 E-value=0.5 Score=36.47 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=25.0
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHHhcCc
Q 008948 27 ALIMEELDPDHLGCIMIDNLEMLLLQAP 54 (548)
Q Consensus 27 ~~~~e~~d~~~~g~i~~~~l~~~l~~~~ 54 (548)
..+|+.+|.|++|+|+.+||+..+....
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999998753
No 105
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=87.67 E-value=0.67 Score=38.91 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
.+..+.||+++|.|++|.|+|+|+-.++-.
T Consensus 47 ~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 47 PMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 456788999999999999999999998754
No 106
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=87.38 E-value=0.67 Score=38.62 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 24 EYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 24 ~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
+-+..||+++|.|++|.|+|+||..++.+
T Consensus 51 ~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 51 AEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 44555899999999999999999888754
No 107
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=87.34 E-value=0.66 Score=38.79 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 24 EYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 24 ~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
+-+..||+++|.|++|.|+|+||..++..
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 56888999999999999999999998865
No 108
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=86.60 E-value=0.81 Score=38.03 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
++.+..||.++|.|++|.|+|+||..++..
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 677888999999999999999999998864
No 109
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=85.36 E-value=0.95 Score=37.95 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
++.+..+|+++|.|++|.|+|+||..++..
T Consensus 50 ~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 50 PMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 456778999999999999999999998864
No 110
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=85.34 E-value=1.1 Score=37.50 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 24 EYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 24 ~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
+-+..+|+++|.|++|.|+|+||-+++..
T Consensus 52 ~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 52 GVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 45667999999999999999999988754
No 111
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=85.30 E-value=1 Score=37.55 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 24 EYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 24 ~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
+.++.+|+++|+|++|.|+|+||..++..
T Consensus 51 ~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 51 EVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 55788899999999999999999988754
No 112
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=84.02 E-value=1.2 Score=37.17 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
++-+..||++.|+|++|.|+|+||..++..
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 355778999999999999999999998864
No 113
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=83.75 E-value=1.2 Score=36.65 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=29.5
Q ss_pred cchhhHHHHHHHHHHhcCC--CCCCceeHHHHHHHHhc
Q 008948 17 NIQKQAEEYAALIMEELDP--DHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 17 ~~~~~~~~~~~~~~e~~d~--~~~g~i~~~~l~~~l~~ 52 (548)
..++|+++ ....|...|. |++|+|+.+||...+..
T Consensus 2 ~~~~~~~~-l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 2 ELEKAIET-IIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred hHHHHHHH-HHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 45677777 5668999999 89999999999999865
No 114
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=83.45 E-value=1.6 Score=31.91 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLL 50 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l 50 (548)
++.+..+|+.+|.|++|.|+++||...+
T Consensus 35 ~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 35 EEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4556678888888888899988887654
No 115
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=83.28 E-value=1.5 Score=33.58 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
++.+..|++++|.|++|.|+|+|+...+..
T Consensus 32 ~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 32 RSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred HHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 445677899999999999999999887754
No 116
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=82.32 E-value=1.7 Score=36.20 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHhcC-CCCCCc-eeHHHHHHHHhc
Q 008948 20 KQAEEYAALIMEELD-PDHLGC-IMIDNLEMLLLQ 52 (548)
Q Consensus 20 ~~~~~~~~~~~e~~d-~~~~g~-i~~~~l~~~l~~ 52 (548)
|++.+-....|...| .|++|+ |+.+||+.+|+.
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~ 39 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHH
Confidence 566677778999997 999995 999999999964
No 117
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=81.53 E-value=1.7 Score=35.70 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
++.+..||.++|.|++|.|+|+||..++..
T Consensus 50 ~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 50 PEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 556777999999999999999999998865
No 118
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=80.24 E-value=1.6 Score=36.74 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 19 QKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 19 ~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
++|.++ ...+|+..|.|++|.|+.+||+..|..
T Consensus 6 ~~~~~~-l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 6 PEDKAK-YEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHH-HHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 344443 345677788888888888888887765
No 119
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=78.52 E-value=4.5 Score=42.80 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=55.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCCCceeHHHHHHHHhcCccccccCCCCcchhHHHhhhcCCCCCCCccchhhhhhhHhhh
Q 008948 16 SNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVKGGESRNLSHMLSQKLKPTQFDNPIRRCCDSTMYFLL 95 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (548)
...+++-|-=.+.+|+++|.+|+|.+++.||+..|...+... ...+....+.+...+.+.- + --+..++.|+.
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~----~~~~~~~~l~~~~d~~~dg-~--vDy~eF~~Y~~ 78 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPK----PNYEAAKMLFSAMDANRDG-R--VDYSEFKRYLD 78 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCC----CchHHHHHHHHhcccCcCC-c--ccHHHHHHHHH
Confidence 456778888899999999999999999999998887654331 1122333444444332221 1 13677888888
Q ss_pred cCceeeehh
Q 008948 96 DNWQRVWVM 104 (548)
Q Consensus 96 ~~~~~i~~l 104 (548)
++-.+++-+
T Consensus 79 ~~E~~l~~~ 87 (463)
T KOG0036|consen 79 NKELELYRI 87 (463)
T ss_pred HhHHHHHHH
Confidence 888776543
No 120
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=78.25 E-value=2.5 Score=39.36 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=14.3
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 27 ALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 27 ~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
.-.|+..|.|++|+|+..+|...|..
T Consensus 95 ~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 95 REAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHHHHHhCCCCCceecHHHHHHHHHh
Confidence 33455556666666665555555543
No 121
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=77.78 E-value=2.6 Score=37.07 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCCCCCceeHHHHHHHH
Q 008948 25 YAALIMEELDPDHLGCIMIDNLEMLL 50 (548)
Q Consensus 25 ~~~~~~e~~d~~~~g~i~~~~l~~~l 50 (548)
-+.-+|..+|.|++|+|+.+||+...
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 34566777777777777777777654
No 122
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=76.79 E-value=2.7 Score=30.62 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=24.0
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHHhcC
Q 008948 27 ALIMEELDPDHLGCIMIDNLEMLLLQA 53 (548)
Q Consensus 27 ~~~~e~~d~~~~g~i~~~~l~~~l~~~ 53 (548)
..+|...|+|++|+|+++|++..+...
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 467889999999999999999999764
No 123
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=76.50 E-value=2.4 Score=32.32 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=22.7
Q ss_pred HHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 28 LIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 28 ~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
.+|+.+|+|++|.|+.+||+..|.+
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~ 27 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGK 27 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4788999999999999999998875
No 124
>PTZ00183 centrin; Provisional
Probab=75.67 E-value=3.3 Score=37.43 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
++....+|+.+|.|++|+|+.+||...|..
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 455678899999999999999999887653
No 125
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=74.92 E-value=3.5 Score=34.56 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 26 AALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 26 ~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
+..||.+.|.|++|.|+|+||..++..
T Consensus 46 v~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 46 LAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 457889999999999999999998765
No 126
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=72.83 E-value=3.3 Score=39.61 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=30.3
Q ss_pred cchhhHHHHHHHHHHhcCCCCCCceeHHHHHHHHhcC
Q 008948 17 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 53 (548)
Q Consensus 17 ~~~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~~ 53 (548)
+++.|++ ++..+|...|.|.+|||++.|||.+|++-
T Consensus 93 FsrkqIk-~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 93 FSRKQIK-DAESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHH-HHHHHHHHhcccccccccHHHHHHHHHHh
Confidence 3455554 56889999999999999999999999874
No 127
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=71.89 E-value=4 Score=37.30 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHhcC
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLLLQA 53 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~~ 53 (548)
++-....|+.+|+|++|+|+.+||+..|...
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 3456678999999999999999999999864
No 128
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=69.84 E-value=6.2 Score=32.95 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCC-CCCCceeHHHHHHHHhc
Q 008948 22 AEEYAALIMEELDP-DHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 22 ~~~~~~~~~e~~d~-~~~g~i~~~~l~~~l~~ 52 (548)
+=+-....|...|. |++|+|+..||+.+|.+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHH
Confidence 33444567889999 99999999999999987
No 129
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=68.68 E-value=4.8 Score=38.68 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=32.3
Q ss_pred chhhHHHHHHHHHHhcCCCCCCceeHHHHHHHHhcCc
Q 008948 18 IQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 54 (548)
Q Consensus 18 ~~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~~~ 54 (548)
-++..++.++.+|...|.|++|.+|++|+..-...-+
T Consensus 141 ~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~ 177 (193)
T KOG0044|consen 141 DEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADP 177 (193)
T ss_pred ccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCH
Confidence 3677899999999999999999999999998776543
No 130
>PTZ00183 centrin; Provisional
Probab=68.23 E-value=6.9 Score=35.26 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=28.9
Q ss_pred cchhhHHHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 17 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 17 ~~~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
..+++.+++ ..+|..+|+|++|.|+.+||...|..
T Consensus 11 ~~~~~~~~~-~~~F~~~D~~~~G~i~~~e~~~~l~~ 45 (158)
T PTZ00183 11 LTEDQKKEI-REAFDLFDTDGSGTIDPKELKVAMRS 45 (158)
T ss_pred CCHHHHHHH-HHHHHHhCCCCCCcccHHHHHHHHHH
Confidence 456677776 55578899999999999999999874
No 131
>PTZ00184 calmodulin; Provisional
Probab=67.77 E-value=6.9 Score=34.71 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 19 QKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 19 ~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
+++.++ ....|+.+|.|++|.|+++||...|..
T Consensus 7 ~~~~~~-~~~~F~~~D~~~~G~i~~~e~~~~l~~ 39 (149)
T PTZ00184 7 EEQIAE-FKEAFSLFDKDGDGTITTKELGTVMRS 39 (149)
T ss_pred HHHHHH-HHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 455544 557788899999999999999998854
No 132
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=66.02 E-value=7.3 Score=32.60 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.1
Q ss_pred HHHhcC-CCCCCc-eeHHHHHHHHhc
Q 008948 29 IMEELD-PDHLGC-IMIDNLEMLLLQ 52 (548)
Q Consensus 29 ~~e~~d-~~~~g~-i~~~~l~~~l~~ 52 (548)
+|...| .|++|+ |+.+||+.+|.+
T Consensus 15 ~F~~~dd~dgdg~~Is~~EL~~ll~~ 40 (93)
T cd05026 15 IFHNYSGKEGDRYKLSKGELKELLQR 40 (93)
T ss_pred HHHHHHccCCCCCEECHHHHHHHHHH
Confidence 367777 899985 999999999965
No 133
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=65.30 E-value=6.5 Score=37.80 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=28.9
Q ss_pred cchhhHHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 008948 17 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 50 (548)
Q Consensus 17 ~~~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~~l 50 (548)
++....+.|+..+|+..|.|++|.|+|+||-..|
T Consensus 57 fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~al 90 (193)
T KOG0044|consen 57 FPDGDASKYAELVFRTFDKNKDGTIDFLEFICAL 90 (193)
T ss_pred CCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHH
Confidence 3455678999999999999999999999976655
No 134
>PTZ00184 calmodulin; Provisional
Probab=64.96 E-value=7.6 Score=34.41 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLL 50 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l 50 (548)
++-+..+|+..|.|++|+|+.+||...|
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l 110 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVM 110 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHH
Confidence 3456778899999999999988887654
No 135
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=61.69 E-value=10 Score=31.67 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCC-CC-CCceeHHHHHHHHhc
Q 008948 23 EEYAALIMEELDP-DH-LGCIMIDNLEMLLLQ 52 (548)
Q Consensus 23 ~~~~~~~~e~~d~-~~-~g~i~~~~l~~~l~~ 52 (548)
.+-....|..+|. |+ +|+|+.+||+..|..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 3344557888987 86 799999999999874
No 136
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=58.85 E-value=13 Score=30.81 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=22.5
Q ss_pred HHHHHHhcC-CCCCC-ceeHHHHHHHHhc
Q 008948 26 AALIMEELD-PDHLG-CIMIDNLEMLLLQ 52 (548)
Q Consensus 26 ~~~~~e~~d-~~~~g-~i~~~~l~~~l~~ 52 (548)
....|...| .|++| +|+.+||+.+|+.
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 445677887 89999 5999999999986
No 137
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=58.08 E-value=14 Score=33.75 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 23 EEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 23 ~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
++.+..|++++|.|++|.|.|+++.+++..
T Consensus 120 ~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 120 DEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 678999999999999999999999998854
No 138
>PF14658 EF-hand_9: EF-hand domain
Probab=58.08 E-value=15 Score=28.86 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=24.3
Q ss_pred cchhhHHHHHHHHHHhcCCCCC-CceeHHHHHHHHhc
Q 008948 17 NIQKQAEEYAALIMEELDPDHL-GCIMIDNLEMLLLQ 52 (548)
Q Consensus 17 ~~~~~~~~~~~~~~e~~d~~~~-g~i~~~~l~~~l~~ 52 (548)
-.++.+++ +..++|||+. |.|.+++|...|++
T Consensus 32 p~e~~Lq~----l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 32 PEESELQD----LINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CcHHHHHH----HHHHhCCCCCCceEeHHHHHHHHHH
Confidence 34444554 4568999999 99999999988864
No 139
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=51.35 E-value=22 Score=29.53 Aligned_cols=36 Identities=6% Similarity=0.061 Sum_probs=25.9
Q ss_pred cchhhHHHHHHHHHHh-cCCCCCC-ceeHHHHHHHHhcC
Q 008948 17 NIQKQAEEYAALIMEE-LDPDHLG-CIMIDNLEMLLLQA 53 (548)
Q Consensus 17 ~~~~~~~~~~~~~~e~-~d~~~~g-~i~~~~l~~~l~~~ 53 (548)
.+++.++.+ ..+|.. +|.|++| +|+-+||+.+|.+.
T Consensus 3 ~le~~i~~l-~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e 40 (89)
T cd05023 3 ETERCIESL-IAVFQKYAGKDGDSYQLSKTEFLSFMNTE 40 (89)
T ss_pred hHHHHHHHH-HHHHHHHhccCCCcCeECHHHHHHHHHHh
Confidence 344444444 445666 8998876 99999999999774
No 140
>PLN02964 phosphatidylserine decarboxylase
Probab=50.30 E-value=16 Score=41.65 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=25.0
Q ss_pred chhhHHHHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 18 IQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 18 ~~~~~~~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
..++-...+..+|++.|.|++|.|+++||..+|..
T Consensus 173 pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~ 207 (644)
T PLN02964 173 PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA 207 (644)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 33433346788888888888888888888776653
No 141
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=49.62 E-value=19 Score=31.58 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.0
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 26 AALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 26 ~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
+..+|+..|.|++|+||++|+..-|.+
T Consensus 82 ~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 82 IKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 566999999999999999999998843
No 142
>PLN02964 phosphatidylserine decarboxylase
Probab=46.19 E-value=22 Score=40.48 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=18.5
Q ss_pred ccchhhHHHHHHHHHHhcCCCCCCce
Q 008948 16 SNIQKQAEEYAALIMEELDPDHLGCI 41 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~e~~d~~~~g~i 41 (548)
.+.++|.+|+-+. |+.+|+|++|.|
T Consensus 136 ~f~~kqi~elkea-F~lfD~dgdG~i 160 (644)
T PLN02964 136 DFVTQEPESACES-FDLLDPSSSNKV 160 (644)
T ss_pred hccHHHHHHHHHH-HHHHCCCCCCcC
Confidence 4667777777555 888888888865
No 143
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.48 E-value=16 Score=41.75 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=38.5
Q ss_pred HHHhhhhhh-hhhccccccccccccCcchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 008948 152 ILLPVCRNT-ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLAC 204 (548)
Q Consensus 152 ill~~~Rn~-it~Lr~~~~l~~~ip~d~~~~fHk~ig~~~~~~~~iH~~~hl~~ 204 (548)
..+|..||+ +.++. ++.+...+.+|+|.|.+++...++|+...+.+
T Consensus 209 ~~~p~~~n~~fh~l~-------g~~~~~~~~~H~w~~~~~~~~~~ih~~~~~~~ 255 (646)
T KOG0039|consen 209 SYLPFDRNLNFHKLV-------ALTIAVFILLHIWLHLVNFFPFLVHGLEYTIS 255 (646)
T ss_pred eEeeccccchHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 448888986 55554 58899999999999999999999999988754
No 144
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=40.38 E-value=16 Score=31.54 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHH
Q 008948 24 EYAALIMEELDPDHLGCIMIDNLEMLL 50 (548)
Q Consensus 24 ~~~~~~~e~~d~~~~g~i~~~~l~~~l 50 (548)
+....|.+-+|.|++|+++++||-.-|
T Consensus 43 ~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 43 DVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp HHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 455677888888888888888887644
No 145
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=40.06 E-value=24 Score=27.72 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=22.1
Q ss_pred eeeeeecccccccc------hhhHHHHHHHHHHhcC
Q 008948 5 IISLSASANKLSNI------QKQAEEYAALIMEELD 34 (548)
Q Consensus 5 ~~~~~~~~n~~~~~------~~~~~~~~~~~~e~~d 34 (548)
+.+=.+|+|+|+-. |+++++...-++|++|
T Consensus 26 v~Vr~~s~~~l~v~g~~~~~k~~i~~iLqe~we~aD 61 (65)
T PF06183_consen 26 VRVRPGSANGLSVSGGKKDDKERIEEILQEMWEDAD 61 (65)
T ss_dssp EEEEEESS-EEEEES--HHHHHHHHHHHHHHHHTHH
T ss_pred EeeeecccCccccCCcCchHHHHHHHHHHHHHhccc
Confidence 33446788887643 7889999999999987
No 146
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=39.37 E-value=35 Score=31.78 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=14.1
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHHh
Q 008948 26 AALIMEELDPDHLGCIMIDNLEMLLL 51 (548)
Q Consensus 26 ~~~~~e~~d~~~~g~i~~~~l~~~l~ 51 (548)
++.|+.+.|+|++|+|+|++|.+...
T Consensus 130 v~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 130 VEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 34455555555555555555555443
No 147
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=37.19 E-value=34 Score=26.32 Aligned_cols=25 Identities=20% Similarity=-0.071 Sum_probs=21.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhh
Q 008948 177 DDNLNFHKVIAVGISIGVGIHAISH 201 (548)
Q Consensus 177 d~~~~fHk~ig~~~~~~~~iH~~~h 201 (548)
+.....|.+.|...++++++|.+.|
T Consensus 39 ~~~~~iH~~~g~~~~~l~~~Hl~lh 63 (64)
T PF14358_consen 39 HFWRNIHLWAGYLFLILIILHLGLH 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556899999999999999999876
No 148
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=36.95 E-value=49 Score=27.37 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=26.6
Q ss_pred ccchhhHHHHHHHHHHhcCC-CC-CCceeHHHHHHHHhc
Q 008948 16 SNIQKQAEEYAALIMEELDP-DH-LGCIMIDNLEMLLLQ 52 (548)
Q Consensus 16 ~~~~~~~~~~~~~~~e~~d~-~~-~g~i~~~~l~~~l~~ 52 (548)
|.+++.+..+++ +|...|. |+ +|+|+-+||+..|.+
T Consensus 3 ~~~e~~~~~~i~-~F~~y~~~~~~~g~Is~~EL~~~l~~ 40 (88)
T cd05029 3 SPLDQAIGLLVA-IFHKYSGREGDKNTLSKKELKELIQK 40 (88)
T ss_pred cHHHHHHHHHHH-HHHHHHccCCCCCEECHHHHHHHHHH
Confidence 455666666554 6677776 66 899999999999964
No 149
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=36.04 E-value=76 Score=30.83 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=26.8
Q ss_pred cccEEEEEEEEecC-----CEEEEEEECCC-CcccCCCCEEEEEecC
Q 008948 337 IKAVSIQKVAVYPG-----NVLALHMSKPD-RFRYKSGQYMFVNCAA 377 (548)
Q Consensus 337 ~~~~~v~~v~~l~~-----~v~~l~l~~p~-~~~~~pGQyv~L~~p~ 377 (548)
-..++|++.+.+++ ++.++++..+. +..|+||+++-|..+.
T Consensus 8 p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N 54 (219)
T PF00667_consen 8 PFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPN 54 (219)
T ss_dssp -EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SS
T ss_pred CEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccC
Confidence 35678888888865 49999998764 7999999999998764
No 150
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=32.42 E-value=94 Score=26.57 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHH-HHHHHhhccc
Q 008948 277 GFNAFWYSHHLFVIV-YTLLIVHGQY 301 (548)
Q Consensus 277 ~ye~F~~~H~l~~~~-~~ll~~H~~~ 301 (548)
.++.....|...+.+ +++..+|+..
T Consensus 29 ~~~~~~~~Hr~lg~~~~~~~~~H~~~ 54 (125)
T PF01794_consen 29 SFDRLLRFHRWLGRLAFFLALLHGVL 54 (125)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999998764 5567899864
No 151
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=30.21 E-value=52 Score=35.17 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=12.9
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 27 ALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 27 ~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
..+|+..|.|++|.|..+|+.+-|.+
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~ 110 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKD 110 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHH
Confidence 34455555555555555555444444
No 152
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.14 E-value=54 Score=31.67 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=26.4
Q ss_pred hhhhhHhhhcCceeeehhHHHHHHHHHHHHHHhhcccc
Q 008948 87 CDSTMYFLLDNWQRVWVMAQWIGVMAGLFTYKYIQYKN 124 (548)
Q Consensus 87 ~~~~~~~~~~~~~~i~~l~~~~~i~~~lf~~~~~~y~~ 124 (548)
.-.+++|+.+|.+-+ ++.+++.-.++|.|++++-..
T Consensus 11 l~~ik~wwkeNGk~l--i~gviLg~~~lfGW~ywq~~q 46 (207)
T COG2976 11 LEAIKDWWKENGKAL--IVGVILGLGGLFGWRYWQSHQ 46 (207)
T ss_pred HHHHHHHHHHCCchh--HHHHHHHHHHHHHHHHHHHHH
Confidence 345778888998544 555777888999999987543
No 153
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=27.67 E-value=2.9e+02 Score=26.65 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHH-HHhhcc
Q 008948 278 FNAFWYSHHLFVIVYTL-LIVHGQ 300 (548)
Q Consensus 278 ye~F~~~H~l~~~~~~l-l~~H~~ 300 (548)
.+.....|.+.+.++++ +++|..
T Consensus 146 ~~~~~~~H~~~a~~~i~~iivHiy 169 (211)
T PRK10639 146 IRFALMLHSFAAVALIVVIMVHIY 169 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999998866554 577765
No 154
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=27.05 E-value=56 Score=31.88 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHH
Q 008948 24 EYAALIMEELDPDHLGCIMIDNLEML 49 (548)
Q Consensus 24 ~~~~~~~e~~d~~~~g~i~~~~l~~~ 49 (548)
|-+.+|+--.|.|++|.|.++||+.|
T Consensus 94 ~TcrlmI~mfd~~~~G~i~f~EF~~L 119 (221)
T KOG0037|consen 94 ETCRLMISMFDRDNSGTIGFKEFKAL 119 (221)
T ss_pred HHHHHHHHHhcCCCCCccCHHHHHHH
Confidence 34555666666666666666666554
No 155
>PLN02631 ferric-chelate reductase
Probab=25.31 E-value=87 Score=36.22 Aligned_cols=58 Identities=21% Similarity=0.139 Sum_probs=41.4
Q ss_pred cccchhHHHHHHHHHHHHHHHhcchhhhhccCCCCCCcccccc--hhHHHHHHHHHHH-HHHHHHhhccc
Q 008948 235 VKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTG--FNAFWYSHHLFVI-VYTLLIVHGQY 301 (548)
Q Consensus 235 ~~~~~g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~~~~~--ye~F~~~H~l~~~-~~~ll~~H~~~ 301 (548)
+..+.-.+|+++..++.++++++. |.+ ++-.+++ ||.|-..|...+- ++++.++|+..
T Consensus 149 l~~ig~RtGila~~~lpll~L~a~---Rnn------~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~i~ 209 (699)
T PLN02631 149 FRAFGLRIGYVGHICWAFLFFPVT---RAS------TILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVV 209 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---ccC------HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556788888888888777763 333 3445555 9999999999874 55667899764
No 156
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=24.63 E-value=5.4e+02 Score=23.46 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 008948 180 LNFHKVIAVGISIGVGIHAISH 201 (548)
Q Consensus 180 ~~fHk~ig~~~~~~~~iH~~~h 201 (548)
..+|.++|.+++...+++..-.
T Consensus 43 ~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 43 RNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999988887655
No 157
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=24.57 E-value=3.7e+02 Score=24.62 Aligned_cols=27 Identities=7% Similarity=-0.137 Sum_probs=22.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhhc
Q 008948 177 DDNLNFHKVIAVGISIGVGIHAISHLA 203 (548)
Q Consensus 177 d~~~~fHk~ig~~~~~~~~iH~~~hl~ 203 (548)
.....+|+++|.+.++..+++.+..+.
T Consensus 44 ~~~~~~H~~~G~~~~~~~~~~~~~~~~ 70 (188)
T PF00033_consen 44 QLLRWLHFSLGIVFLALFLLRILWRLF 70 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345589999999999999999887763
No 158
>PLN02292 ferric-chelate reductase
Probab=23.28 E-value=1e+02 Score=35.67 Aligned_cols=57 Identities=25% Similarity=0.260 Sum_probs=40.4
Q ss_pred ccchhHHHHHHHHHHHHHHHhcchhhhhccCCCCCCcccccc--hhHHHHHHHHHH-HHHHHHHhhccc
Q 008948 236 KSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTG--FNAFWYSHHLFV-IVYTLLIVHGQY 301 (548)
Q Consensus 236 ~~~~g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~~~~~--ye~F~~~H~l~~-~~~~ll~~H~~~ 301 (548)
..+.-.+|+++..+|.++++++. |.+ +|-.+++ ||.|-..|...+ +++++.++|+..
T Consensus 167 ~~vg~R~Gila~~~lpll~l~~~---Rnn------~L~~ltG~s~e~f~~yHRWlGrii~ll~~lH~i~ 226 (702)
T PLN02292 167 DSIAVRLGLVGNICLAFLFYPVA---RGS------SLLAAVGLTSESSIKYHIWLGHLVMTLFTSHGLC 226 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---cCC------HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888877877777663 443 4555555 999999999887 456667899774
No 159
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=23.05 E-value=76 Score=30.84 Aligned_cols=26 Identities=19% Similarity=0.384 Sum_probs=16.1
Q ss_pred CCeeeeeecccCCC--CCeEEEEEEEcC
Q 008948 380 PFEWHPFSITSAPD--DDYLSVHIRTLG 405 (548)
Q Consensus 380 ~~e~hPFSIaS~p~--~~~l~l~Ir~~g 405 (548)
+.+-|.|||+|+|. .+.+++.+..+.
T Consensus 176 ~l~PR~YSIsSS~~~~p~~v~ltv~vv~ 203 (219)
T PF00667_consen 176 PLQPRYYSISSSPLVHPNKVHLTVSVVE 203 (219)
T ss_dssp B---EEEEB-S-TTTSTTEEEEEEEE-E
T ss_pred CCCCcceeecccccCCCCEEEEEEEEEE
Confidence 34789999999984 678888887664
No 160
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=22.70 E-value=97 Score=21.22 Aligned_cols=17 Identities=6% Similarity=0.170 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 008948 180 LNFHKVIAVGISIGVGI 196 (548)
Q Consensus 180 ~~fHk~ig~~~~~~~~i 196 (548)
...|+|+|..+.++..+
T Consensus 5 ~~~H~W~Gl~~g~~l~~ 21 (37)
T PF13706_consen 5 RKLHRWLGLILGLLLFV 21 (37)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47899999988766544
No 161
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=21.87 E-value=89 Score=25.68 Aligned_cols=30 Identities=27% Similarity=0.160 Sum_probs=23.1
Q ss_pred eeeeeeccccccc------chhhHHHHHHHHHHhcC
Q 008948 5 IISLSASANKLSN------IQKQAEEYAALIMEELD 34 (548)
Q Consensus 5 ~~~~~~~~n~~~~------~~~~~~~~~~~~~e~~d 34 (548)
+.+=-+|+|+|+- -|++++|...-++|+||
T Consensus 40 v~Vr~~s~n~lsv~g~~k~dK~~i~eiLqE~we~AD 75 (81)
T PRK10597 40 VSVRYAAANNLSVIGATKEDKDRISEILQETWESAD 75 (81)
T ss_pred EEEeecCCCceEecCCCcchHHHHHHHHHHHHhChh
Confidence 4444678888874 46788899999999988
No 162
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=21.87 E-value=1.1e+02 Score=28.49 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHHhc
Q 008948 24 EYAALIMEELDPDHLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 24 ~~~~~~~e~~d~~~~g~i~~~~l~~~l~~ 52 (548)
+=..-.|+..|+|.+|+|++++|+--++.
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmra 61 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRA 61 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHH
Confidence 34556788899999999999999766654
No 163
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=20.75 E-value=1.4e+02 Score=24.40 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=22.7
Q ss_pred chhhHHHHHHHHHHhcCCC-CCCceeHHHHHHHHhc
Q 008948 18 IQKQAEEYAALIMEELDPD-HLGCIMIDNLEMLLLQ 52 (548)
Q Consensus 18 ~~~~~~~~~~~~~e~~d~~-~~g~i~~~~l~~~l~~ 52 (548)
+++-++.++...-+-+.++ ++|+|+.+||+.+|.+
T Consensus 3 ~e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~ 38 (88)
T cd05030 3 LEKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEK 38 (88)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHH
Confidence 3344444444444444453 5899999999999963
No 164
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=20.42 E-value=88 Score=32.80 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=22.0
Q ss_pred CeEEEEEcccC--HHHHHHHHHHHHHh
Q 008948 460 EVVLLVGLGIG--ATPMISIVKDIVNN 484 (548)
Q Consensus 460 ~~vvlIagGiG--ITP~lsil~~l~~~ 484 (548)
+++++.|||+| |.|.+++++.+.++
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 46899999999 89999999999764
No 165
>PF14145 YrhK: YrhK-like protein
Probab=20.38 E-value=1.6e+02 Score=22.61 Aligned_cols=53 Identities=23% Similarity=0.497 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccccccccccccceeeehhhHHHHHHHHHHHHHHhh
Q 008948 278 FNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRALR 334 (548)
Q Consensus 278 ye~F~~~H~l~~~~~~ll~~H~~~~~l~~~w~~~~~w~~~~~~~~ly~~dr~~R~~r 334 (548)
||.+...=-+.+ .++++=|+..++.+.++....|.|++. -+++++.-.+|..|
T Consensus 4 ye~~~~~~d~~~---~~~FliGSilfl~~~~~~~g~wlFiiG-S~~f~i~~~i~~ir 56 (59)
T PF14145_consen 4 YEIISTVNDFIG---GLLFLIGSILFLPESLYTAGTWLFIIG-SILFLIRPIIRLIR 56 (59)
T ss_pred hHHHHHHHHHHH---HHHHHHHHHHHcCchhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 666554333322 223333444455445555567877664 45566666666654
Done!