Query 008949
Match_columns 548
No_of_seqs 257 out of 1471
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 18:33:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0797 Actin-related protein 100.0 6.5E-77 1.4E-81 612.7 22.7 504 1-545 16-585 (618)
2 PTZ00452 actin; Provisional 100.0 2E-60 4.3E-65 503.0 31.3 296 172-547 50-347 (375)
3 PTZ00466 actin-like protein; P 100.0 2.7E-60 5.9E-65 502.5 31.9 294 172-547 57-352 (380)
4 PTZ00281 actin; Provisional 100.0 2.2E-59 4.8E-64 495.6 29.4 296 172-547 51-348 (376)
5 KOG0676 Actin and related prot 100.0 2.2E-59 4.7E-64 483.3 25.3 289 172-545 52-342 (372)
6 PTZ00004 actin-2; Provisional 100.0 9.6E-58 2.1E-62 483.6 31.2 297 172-547 51-350 (378)
7 PTZ00280 Actin-related protein 100.0 4.3E-56 9.4E-61 476.4 32.0 302 172-547 52-382 (414)
8 KOG0677 Actin-related protein 100.0 2.3E-57 4.9E-62 435.0 18.7 290 172-541 51-353 (389)
9 KOG0679 Actin-related protein 100.0 1.8E-54 3.8E-59 435.4 23.6 325 172-544 55-394 (426)
10 PF00022 Actin: Actin; InterP 100.0 5.3E-54 1.2E-58 457.0 25.1 307 173-546 45-364 (393)
11 smart00268 ACTIN Actin. ACTIN 100.0 6.6E-52 1.4E-56 438.3 31.5 299 172-547 45-345 (373)
12 cd00012 ACTIN Actin; An ubiqui 100.0 4.6E-51 9.9E-56 431.7 30.5 298 172-547 44-345 (371)
13 COG5277 Actin and related prot 100.0 1.1E-49 2.4E-54 424.7 27.8 333 172-545 52-414 (444)
14 KOG0680 Actin-related protein 100.0 9E-48 1.9E-52 378.6 23.3 309 174-544 42-368 (400)
15 KOG0678 Actin-related protein 100.0 1.4E-37 3.1E-42 307.0 12.3 296 172-541 57-376 (415)
16 KOG0681 Actin-related protein 100.0 3.4E-33 7.4E-38 291.1 22.8 158 188-364 79-241 (645)
17 PRK13930 rod shape-determining 100.0 9.2E-30 2E-34 265.5 21.1 251 173-517 46-305 (335)
18 PRK13927 rod shape-determining 100.0 1.1E-29 2.4E-34 264.9 20.5 249 173-517 43-301 (334)
19 TIGR00904 mreB cell shape dete 99.9 2.6E-26 5.7E-31 239.5 19.0 253 172-517 43-304 (333)
20 PRK13929 rod-share determining 99.9 3.3E-25 7.2E-30 231.4 21.9 245 174-517 43-303 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 3.4E-23 7.3E-28 213.6 18.0 249 173-517 39-298 (326)
22 PRK13928 rod shape-determining 99.9 2.2E-22 4.7E-27 210.3 17.6 252 173-518 41-301 (336)
23 COG1077 MreB Actin-like ATPase 99.7 1.1E-16 2.3E-21 160.7 14.6 256 172-518 45-309 (342)
24 TIGR02529 EutJ ethanolamine ut 99.4 6.6E-12 1.4E-16 125.3 17.5 135 192-359 28-165 (239)
25 PRK15080 ethanolamine utilizat 99.2 1.3E-09 2.7E-14 110.7 19.1 137 189-358 52-191 (267)
26 PRK09472 ftsA cell division pr 98.8 1.7E-08 3.7E-13 108.9 11.5 94 249-361 165-263 (420)
27 TIGR01174 ftsA cell division p 98.8 2.2E-08 4.8E-13 106.3 11.5 91 254-363 162-257 (371)
28 PLN03184 chloroplast Hsp70; Pr 98.7 1.5E-06 3.2E-11 99.2 20.3 92 239-331 175-274 (673)
29 TIGR01991 HscA Fe-S protein as 98.6 2.2E-07 4.8E-12 104.6 12.1 93 239-332 132-232 (599)
30 PTZ00186 heat shock 70 kDa pre 98.6 1.2E-06 2.6E-11 99.4 17.7 91 239-330 163-261 (657)
31 CHL00094 dnaK heat shock prote 98.6 1.9E-06 4.2E-11 97.5 19.3 91 239-330 138-236 (621)
32 PTZ00400 DnaK-type molecular c 98.6 1.8E-06 3.9E-11 98.3 18.9 92 239-331 177-276 (663)
33 PRK00290 dnaK molecular chaper 98.6 1.9E-06 4.1E-11 97.8 17.5 91 239-330 136-234 (627)
34 TIGR02350 prok_dnaK chaperone 98.5 1E-06 2.2E-11 99.4 14.2 91 239-330 133-232 (595)
35 PRK01433 hscA chaperone protei 98.5 1.7E-06 3.8E-11 97.2 15.3 93 239-332 144-244 (595)
36 PRK13411 molecular chaperone D 98.5 3.7E-06 7.9E-11 95.7 17.3 91 239-330 136-235 (653)
37 PRK05183 hscA chaperone protei 98.5 1.2E-06 2.7E-11 98.9 13.1 93 239-332 152-252 (616)
38 PTZ00009 heat shock 70 kDa pro 98.5 1.9E-06 4.1E-11 98.1 14.2 91 239-330 143-243 (653)
39 PRK13410 molecular chaperone D 98.4 4.7E-06 1E-10 94.9 17.1 91 239-330 138-236 (668)
40 COG0849 ftsA Cell division ATP 98.4 7.6E-07 1.7E-11 95.0 9.5 88 256-361 170-262 (418)
41 PRK11678 putative chaperone; P 98.4 8.4E-06 1.8E-10 88.7 16.5 86 239-326 152-260 (450)
42 TIGR01175 pilM type IV pilus a 98.1 5.4E-05 1.2E-09 79.5 13.6 91 249-358 142-244 (348)
43 COG0443 DnaK Molecular chapero 98.0 5.1E-05 1.1E-09 85.1 14.0 109 215-330 105-221 (579)
44 PF11104 PilM_2: Type IV pilus 97.7 0.00028 6.2E-09 74.1 10.8 86 254-358 140-236 (340)
45 PF00012 HSP70: Hsp70 protein; 97.4 0.00073 1.6E-08 76.2 10.5 92 239-331 138-238 (602)
46 PRK13917 plasmid segregation p 97.4 0.0012 2.5E-08 69.7 11.1 69 263-331 151-232 (344)
47 TIGR03739 PRTRC_D PRTRC system 97.1 0.0024 5.3E-08 66.5 10.2 113 213-332 84-215 (320)
48 KOG0104 Molecular chaperones G 96.3 0.079 1.7E-06 59.6 14.8 92 239-331 161-275 (902)
49 COG4972 PilM Tfp pilus assembl 96.2 0.043 9.4E-07 56.5 11.3 79 249-329 147-236 (354)
50 KOG0101 Molecular chaperones H 96.1 0.069 1.5E-06 59.7 12.6 89 239-328 146-244 (620)
51 KOG0100 Molecular chaperones G 95.9 0.036 7.9E-07 58.2 9.1 88 239-327 175-271 (663)
52 PRK10719 eutA reactivating fac 95.7 0.023 5E-07 61.4 6.7 110 211-324 64-184 (475)
53 COG4820 EutJ Ethanolamine util 94.5 0.032 7E-07 53.6 3.2 81 259-357 115-195 (277)
54 TIGR00241 CoA_E_activ CoA-subs 92.7 0.87 1.9E-05 45.6 10.3 100 211-329 33-137 (248)
55 PF06277 EutA: Ethanolamine ut 92.4 0.5 1.1E-05 51.3 8.4 119 211-333 61-201 (473)
56 PF06406 StbA: StbA protein; 91.0 0.27 5.8E-06 51.3 4.5 69 263-331 138-212 (318)
57 KOG0103 Molecular chaperones H 89.9 2.3 5E-05 48.0 10.6 116 211-332 117-247 (727)
58 PF08841 DDR: Diol dehydratase 86.5 2.3 5E-05 43.2 7.3 89 251-357 96-190 (332)
59 PF14450 FtsA: Cell division p 85.9 3.5 7.6E-05 36.4 7.6 59 287-363 2-71 (120)
60 PF02541 Ppx-GppA: Ppx/GppA ph 85.3 1.8 4E-05 44.1 6.3 70 254-326 75-152 (285)
61 PF01968 Hydantoinase_A: Hydan 81.5 2 4.3E-05 44.3 4.6 32 277-308 69-101 (290)
62 TIGR03123 one_C_unchar_1 proba 80.1 13 0.00028 38.9 10.0 91 212-309 35-153 (318)
63 KOG0102 Molecular chaperones m 78.8 17 0.00036 40.3 10.6 91 239-330 163-261 (640)
64 TIGR03706 exo_poly_only exopol 75.7 8.1 0.00018 39.8 7.1 70 254-326 89-165 (300)
65 PRK11031 guanosine pentaphosph 73.4 13 0.00028 41.3 8.4 69 254-325 95-171 (496)
66 COG0248 GppA Exopolyphosphatas 54.2 9 0.00019 42.4 2.6 42 283-326 128-169 (492)
67 COG4819 EutA Ethanolamine util 48.5 56 0.0012 34.3 7.0 107 211-321 63-180 (473)
68 PRK10854 exopolyphosphatase; P 47.7 22 0.00048 39.6 4.4 40 284-325 137-176 (513)
69 COG1548 Predicted transcriptio 46.3 14 0.0003 37.3 2.1 22 284-305 130-151 (330)
70 PF08735 DUF1786: Putative pyr 41.6 46 0.001 33.6 5.1 45 262-307 139-190 (254)
71 PF00012 HSP70: Hsp70 protein; 37.2 20 0.00043 40.5 2.0 43 472-517 311-353 (602)
72 COG4012 Uncharacterized protei 36.7 2.1E+02 0.0046 29.2 8.7 40 268-307 207-250 (342)
73 COG0145 HyuA N-methylhydantoin 34.0 40 0.00088 38.9 3.8 33 277-309 269-303 (674)
74 TIGR02261 benz_CoA_red_D benzo 33.3 34 0.00073 34.8 2.7 46 470-518 191-237 (262)
75 PF03702 UPF0075: Uncharacteri 31.6 27 0.00059 37.2 1.8 26 493-518 285-310 (364)
76 TIGR03286 methan_mark_15 putat 29.9 37 0.00079 36.6 2.4 61 470-541 335-395 (404)
77 PF00871 Acetate_kinase: Aceto 27.5 30 0.00065 37.2 1.3 55 255-310 161-224 (388)
78 TIGR02259 benz_CoA_red_A benzo 27.4 62 0.0014 34.9 3.6 45 491-539 380-424 (432)
79 PRK03011 butyrate kinase; Prov 25.1 41 0.0009 35.7 1.8 26 284-310 176-201 (358)
80 TIGR03192 benz_CoA_bzdQ benzoy 24.5 53 0.0012 33.9 2.4 46 470-518 220-265 (293)
81 TIGR02707 butyr_kinase butyrat 22.4 47 0.001 35.2 1.6 50 260-310 146-199 (351)
82 PRK02308 uvsE putative UV dama 20.9 65 0.0014 33.4 2.2 16 14-29 140-158 (303)
No 1
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=6.5e-77 Score=612.67 Aligned_cols=504 Identities=38% Similarity=0.600 Sum_probs=368.5
Q ss_pred CCcccccCchhhHhhcCCCEEEEcCCCceeeeecCCCCCCCccceeeeeecCCC-Ccccchhhhccccc----cchhhhh
Q 008949 1 MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQV-PKRNVVDQMLNSQV----TTSQHVE 75 (548)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~iVIhpGS~~lriG~Asd~~P~~ip~~iAr~~~~~-~~~~~~~~~~~~~~----~~~~~~~ 75 (548)
++|++.+-++|...+++.|+||||+||+|+|||+|+|.+|.++||||||+.++. -++......+.+.+ +.....+
T Consensus 16 ~p~~~g~ee~q~~e~ed~k~ivih~gsqnlrig~a~d~np~tv~~~iar~~rap~sdr~~~~p~l~p~~~e~~n~~~~~e 95 (618)
T KOG0797|consen 16 QPYLKGVEETQILEEEDAKLIVIHLGSQNLRIGLAMDENPFTVPNCIARYIRAPVSDRMLNTPVLTPQHVEERNYNSAAE 95 (618)
T ss_pred CCcccCCCccccccccCCCeeEecCCcchhhccccccCCCcccccceeecccCchhhhcccCcCCCccccccccccchhh
Confidence 579999999999999999999999999999999999999999999999998761 11111222222211 0111122
Q ss_pred HHHHHHHHHhhccCCcchhhhhcCCCCcccccccccccccccccccccccccccCCCCCCCcccccccccccCcccccCC
Q 008949 76 RERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQ 155 (548)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~~e~~~~ 155 (548)
+++...-.++.++. |-...+.|+.-.|.+.++++||+-.++|.+|.
T Consensus 96 f~~~lll~~s~lss----------------------------------~~~~kk~ri~v~~~~q~lkn~n~~S~aetvP~ 141 (618)
T KOG0797|consen 96 FLKILLLDESSLSS----------------------------------SASRKKGRIDVYNQAQTLKNDNVASPAETVPD 141 (618)
T ss_pred hhHHHHHhhhhhhh----------------------------------HHHhhcCcccccCchHHhhcccccCccccCCC
Confidence 22222111111111 11111234434477788889999999999984
Q ss_pred CC-Ccccccccccc------cCCcceEEccccccCCCCCCceEecceecCEEeec-CCCCccccHHHHHHHHHHHHhhhc
Q 008949 156 HR-NTDIKELNSSE------RKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHYPMQQVLEDLYAIWDWILTEKL 227 (548)
Q Consensus 156 ~~-~~~~~~~~~~~------~~~~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~-~~~s~~~~~~~le~i~~~~l~~~L 227 (548)
.+ +.-+.+|...+ ..-.+-++|++|.++ .+|.|++||++|.||++ .|+|+|+.++|+++||+|++.+.|
T Consensus 142 ps~~~a~~~wld~e~~~hv~v~c~kr~~~ee~n~i---~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L 218 (618)
T KOG0797|consen 142 PSASEAVPDWLDSEDTSHVKVKCRKRIFGEEANKI---SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKL 218 (618)
T ss_pred CCCCcCCCCccccccchHHHHHHHHHHhhhhhhcC---CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 43 22222222111 122345566677666 48999999999999997 677999999999999999999999
Q ss_pred CCCCCCCCccceEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeee
Q 008949 228 HIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVAL 307 (548)
Q Consensus 228 ~i~~~d~~~~~~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l 307 (548)
+|+++.+.+|+.|||+|+.|.++++++++.+||-+|+|.+++++|+++||+||+|++++||||||+++|+|+||+||.++
T Consensus 219 ~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~ 298 (618)
T KOG0797|consen 219 HIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSL 298 (618)
T ss_pred CCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhh-hhccccCCCCCCCcc
Q 008949 308 PNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVA-VVHSYEDGMPPGSHK 386 (548)
Q Consensus 308 ~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~-~~~~~~~~~p~~~~k 386 (548)
+++++.++|||+|||++|.++|++. .|| |+++++.+.+||.++++|||++|+++.+++.++. .|..+++..| +.|
T Consensus 299 ~ntri~L~YGGdDitr~f~~ll~rs-~FP-y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~--~~k 374 (618)
T KOG0797|consen 299 PNTRIILPYGGDDITRCFLWLLRRS-GFP-YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPP--TLK 374 (618)
T ss_pred cCceEEeccCCchHHHHHHHHHHhc-CCC-cccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCc--cee
Confidence 9999999999999999999999875 465 6889998899999999999999999988776643 2333444444 566
Q ss_pred eeee---eecCCCCCccCCcccCCCC--------CCCCCCCCCCCccccCCCCcccccC----CCC--------------
Q 008949 387 TRLI---ALNVPPMGLFYPKLLVPDV--------YPPPPRSWFNDYEDMLEDTWHTDFP----RRS-------------- 437 (548)
Q Consensus 387 ~~~~---~~~~aP~~lf~p~i~~~e~--------~~~p~~~~~~~~ed~~~d~~~~~~~----eR~-------------- 437 (548)
|+|+ ++++|||+||+|.+|..+. +.+|.+.++.|++..+.|++.-..+ .+.
T Consensus 375 ytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~ 454 (618)
T KOG0797|consen 375 YTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRD 454 (618)
T ss_pred eeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhcccccccccccccccccccccccccccc
Confidence 7775 6789999999999997655 3344444434443333333332111 011
Q ss_pred CCCCCCCCCCCCC------CCCCC----CCCccC-------CCCCcccCCCHHHHHHHHHhhcCChhHHHhhhcCeEEec
Q 008949 438 DISDNFYPGINVG------LPMWE----SYPVLT-------TKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIG 500 (548)
Q Consensus 438 ~~~E~lf~~~~~~------~~~~~----~~~~~~-------~~~~~~~~~gL~eaI~~SI~~c~~~D~r~~L~~nIvL~G 500 (548)
..||..-.+..+. .|... +.+... ...+..-..+|+++|+.||..|...|++++||++|+++|
T Consensus 455 ~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vg 534 (618)
T KOG0797|consen 455 QLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVG 534 (618)
T ss_pred cccccccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhc
Confidence 1111110000000 00000 000000 001111234788999999999988999999999999999
Q ss_pred CCCCcCChHHHHHHHHhhhCCC-CCccceEEeCCCc-----cccccccccc
Q 008949 501 GVALTGGLIPAVEERVLHAIPS-NEAIDMVEVSSHL-----FFFMIKLISC 545 (548)
Q Consensus 501 G~S~ipGf~~RL~~eL~~~~p~-~~~v~~V~~~~~R-----~~~~~~~~~~ 545 (548)
|+.++|||.+.||+++....|+ ...|..|.|++-+ +|-+||+.+-
T Consensus 535 ga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaI 585 (618)
T KOG0797|consen 535 GAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAI 585 (618)
T ss_pred ccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhh
Confidence 9999999999999999999988 4456678887644 8999998764
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=2e-60 Score=502.97 Aligned_cols=296 Identities=21% Similarity=0.311 Sum_probs=254.3
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
+++++|++|... ...+.+++||++|.+. |||++|.||+|+|.+.|+++|+++ +||+++++++++.
T Consensus 50 ~~~~iG~~~~~~--~~~~~l~~Pi~~G~I~---------dwd~~e~iw~~~f~~~l~v~p~~~----pvlitE~~~~~~~ 114 (375)
T PTZ00452 50 KEYYVGEEAQAK--RGVLAIKEPIQNGIIN---------SWDDIEIIWHHAFYNELCMSPEDQ----PVFMTDAPMNSKF 114 (375)
T ss_pred cceEEChhhhcc--ccCcEEcccCcCCEEc---------CHHHHHHHHHHHHHhhcCCCcccC----ceeeecCCCCCHH
Confidence 357899998763 4679999999999998 999999999999988999999998 8999999998777
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.|+ |+|+|||.|++|++++..+++|++|++|++||+|||+|++.|+|+||+||++++++..++++||+++|++|.++|+
T Consensus 115 ~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~ 194 (375)
T PTZ00452 115 NRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQ 194 (375)
T ss_pred HHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHH
Confidence 776 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcccCCCCC
Q 008949 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (548)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~ 410 (548)
.++ +++....+..++++|||++|||+.+..+ ....+.. . +.
T Consensus 195 ~~~-------~~~~~~~~~~~~~~iKe~~c~v~~d~~~---e~~~~~~--~--------------------------~~- 235 (375)
T PTZ00452 195 ELG-------YSLTEPHQRIIVKNIKERLCYTALDPQD---EKRIYKE--S--------------------------NS- 235 (375)
T ss_pred hcC-------CCCCCHHHHHHHHHHHHHhccccCcHHH---HHHHhhc--c--------------------------CC-
Confidence 664 2454456778999999999999863110 0000000 0 00
Q ss_pred CCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhcCChhHH
Q 008949 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQ 489 (548)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~D~r 489 (548)
+. ..| .+|||..+.++ +|+.++|.||.|...| .+..||+++|.+||.+| |+|+|
T Consensus 236 --~~----~~y--~LPDg~~i~l~~er~~~~E~LF~P~~~g----------------~~~~gi~~~i~~si~~c-~~d~r 290 (375)
T PTZ00452 236 --QD----SPY--KLPDGNILTIKSQKFRCSEILFQPKLIG----------------LEVAGIHHLAYSSIKKC-DLDLR 290 (375)
T ss_pred --cC----ceE--ECCCCCEEEeehHHhcCcccccChhhcC----------------CCCCChhHHHHHHHHhC-CHhHH
Confidence 00 112 46788888887 9999999999987544 35679999999999999 89999
Q ss_pred HhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCccccccccccccC
Q 008949 490 RKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFMIKLISCFG 547 (548)
Q Consensus 490 ~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~~~~~~~ 547 (548)
+.||+||+|+||+|+||||.+||++||++++|.+.++ +|.++++|+|++|.+.|-++
T Consensus 291 ~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v-~v~~~~~r~~~aW~GgSila 347 (375)
T PTZ00452 291 QELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKI-QVAAPPDRRFSAWIGGSIQC 347 (375)
T ss_pred HHhhccEEEecccccccCHHHHHHHHHHHhCCCCcee-EEecCCCcceeEEECchhhc
Confidence 9999999999999999999999999999999998888 68899999999998887654
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=2.7e-60 Score=502.52 Aligned_cols=294 Identities=18% Similarity=0.318 Sum_probs=252.7
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
+++++|++|... +..+.++|||++|.+. |||++|.||+|+| +.|+++++++ +||+++++++++.
T Consensus 57 ~~~~vG~~~~~~--~~~~~l~~Pi~~G~v~---------dwd~~e~iw~~~f-~~l~v~~~~~----pvllte~~~~~~~ 120 (380)
T PTZ00466 57 GNIFVGNKAEEY--RGLLKVTYPINHGIIE---------NWNDMENIWIHVY-NSMKINSEEH----PVLLTEAPLNPQK 120 (380)
T ss_pred CCeEECchhhhh--CcCceeCccccCCeEC---------CHHHHHHHHHHHH-hhcccCCccC----eEEEecCccccHH
Confidence 357899999764 3578899999999998 9999999999999 6899998888 9999999998887
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.|+ |+|+|||.|++|+++++.+++||+|++|++||+|||+|++.|+|+||+||+++.++..++++||+++|++|.++|+
T Consensus 121 ~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~ 200 (380)
T PTZ00466 121 NKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLR 200 (380)
T ss_pred HHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHH
Confidence 776 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcccCCCCC
Q 008949 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (548)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~ 410 (548)
+++. .+.+..+..+++++||++|||+.+.. .+... ..+ .+
T Consensus 201 ~~~~-------~~~~~~~~~~v~~iKe~~c~v~~d~~----------~e~~~-~~~--------~~-------------- 240 (380)
T PTZ00466 201 KNGH-------LFNTSAEMEVVKNMKENCCYVSFNMN----------KEKNS-SEK--------AL-------------- 240 (380)
T ss_pred hcCC-------CCCcHHHHHHHHHHHHhCeEecCChH----------HHHhh-ccc--------cc--------------
Confidence 7652 23445678899999999999986310 00000 000 00
Q ss_pred CCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhcCChhHH
Q 008949 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQ 489 (548)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~D~r 489 (548)
.. ..| .+|||..+.++ +||.+||.||.|...| .+..||+++|.+||.+| |.|.|
T Consensus 241 --~~----~~y--~LPdg~~i~l~~er~~~~E~LF~P~~~g----------------~~~~gl~~~i~~sI~~c-~~d~r 295 (380)
T PTZ00466 241 --TT----LPY--ILPDGSQILIGSERYRAPEVLFNPSILG----------------LEYLGLSELIVTSITRA-DMDLR 295 (380)
T ss_pred --cc----eeE--ECCCCcEEEEchHHhcCcccccCccccC----------------CCCCCHHHHHHHHHHhC-ChhhH
Confidence 00 012 46788888887 9999999999987654 45679999999999999 89999
Q ss_pred HhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCccccccccccccC
Q 008949 490 RKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFMIKLISCFG 547 (548)
Q Consensus 490 ~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~~~~~~~ 547 (548)
+.||+||+|+||+|++|||.+||++||+.++|.++++ +|.++++|+|++|++.|-++
T Consensus 296 ~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v-~v~~~~~r~~~aW~GgSila 352 (380)
T PTZ00466 296 RTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITI-RISAPPERKFSTFIGGSILA 352 (380)
T ss_pred HHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceE-EEecCCCCceeEEECchhhc
Confidence 9999999999999999999999999999999998888 69999999999999888654
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=2.2e-59 Score=495.63 Aligned_cols=296 Identities=18% Similarity=0.302 Sum_probs=253.4
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
+++++|++|+.. +..+.++|||++|.+. ||++++.||+|+|.+.|+++++++ +||+++++++++.
T Consensus 51 ~~~~~g~~~~~~--~~~~~l~~Pi~~G~i~---------dwd~~e~l~~~~f~~~l~v~p~~~----pvllte~~~~~~~ 115 (376)
T PTZ00281 51 KDSYVGDEAQSK--RGILTLKYPIEHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----PVLLTEAPLNPKA 115 (376)
T ss_pred CCeEECchhhcc--ccCcEEeccCcCCEEc---------CHHHHHHHHHHHHHhhccCCCccC----eEEEecCCCCcHH
Confidence 357899998753 4679999999999998 999999999999988999999998 9999999998877
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.|+ |+|+|||.|++|+++++.+++|++|++|++||||||+|++.|+|+||+||+++.++..++++||+++|++|.++|.
T Consensus 116 ~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~ 195 (376)
T PTZ00281 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILT 195 (376)
T ss_pred HHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHH
Confidence 776 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcccCCCCC
Q 008949 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (548)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~ 410 (548)
.++ +++.+..+..++++|||++|||+.+-. . ..... .+ + ..
T Consensus 196 ~~~-------~~~~~~~~~~~~~~iKe~~c~v~~d~~-~--~~~~~---~~--------------~-----------~~- 236 (376)
T PTZ00281 196 ERG-------YSFTTTAEREIVRDIKEKLAYVALDFE-A--EMQTA---AS--------------S-----------SA- 236 (376)
T ss_pred hcC-------CCCCcHHHHHHHHHHHHhcEEecCCch-H--HHHhh---hc--------------C-----------cc-
Confidence 664 234445678899999999999985210 0 00000 00 0 00
Q ss_pred CCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhcCChhHH
Q 008949 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQ 489 (548)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~D~r 489 (548)
.. ..| .+|||..+.++ ||+.++|.||.|...| .+..||+++|.+||.+| |.|+|
T Consensus 237 --~~----~~y--~LPdg~~i~i~~er~~~~E~LF~P~~~~----------------~~~~gi~~~i~~sI~~~-~~d~r 291 (376)
T PTZ00281 237 --LE----KSY--ELPDGQVITIGNERFRCPEALFQPSFLG----------------MESAGIHETTYNSIMKC-DVDIR 291 (376)
T ss_pred --cc----eeE--ECCCCCEEEeeHHHeeCcccccChhhcC----------------CCCCCHHHHHHHHHHhC-ChhHH
Confidence 00 112 36788888887 9999999999887544 35679999999999999 89999
Q ss_pred HhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCccccccccccccC
Q 008949 490 RKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFMIKLISCFG 547 (548)
Q Consensus 490 ~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~~~~~~~ 547 (548)
+.||+||+|+||+|+||||.+||++||+.++|..+++ +|.++++|+|++|.+.|-++
T Consensus 292 ~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v-~v~~~~~r~~~aW~Ggsila 348 (376)
T PTZ00281 292 KDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKI-KIIAPPERKYSVWIGGSILA 348 (376)
T ss_pred HHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcce-EEecCCCCceeEEECccccc
Confidence 9999999999999999999999999999999988888 58899999999999888665
No 5
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.2e-59 Score=483.28 Aligned_cols=289 Identities=23% Similarity=0.372 Sum_probs=250.1
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
++.++|++|.... .|+|||+||.+. |||+++.||+|+|.+.|++.|+++ |||+++++++++.
T Consensus 52 ~~~~vg~~a~~~~-----~l~~Pie~Giv~---------~wd~me~iw~~if~~~L~~~Pee~----pvllte~pl~p~~ 113 (372)
T KOG0676|consen 52 KDTYVGDEAESKR-----TLKYPIERGIVT---------DWDDMEKIWHHLFYSELLVAPEEH----PVLLTEPPLNPKA 113 (372)
T ss_pred cccccchhhhccc-----cccCcccccccc---------chHHHHHHHHHHHHHhhccCcccC----ceEeecCCCCchH
Confidence 4667899998753 789999999998 999999999999999999999998 9999999999988
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.|| |+|+|||.|++|++++..++++ |++|++||||||+|++.|+++||+||++++++..++++||+|+|++|++.|.
T Consensus 114 nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~ 191 (372)
T KOG0676|consen 114 NREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLR 191 (372)
T ss_pred hHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHH
Confidence 887 9999999999999999777766 9999999999999999999999999999999999999999999999998887
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcccCCCCC
Q 008949 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (548)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~ 410 (548)
+.+ +++....++++++++||++||++. + +++++.. ..+. +.
T Consensus 192 ~~g-------~s~~~~~~~eIv~diKeklCyval-d---------~~~e~~~-~~~~--------------------~~- 232 (372)
T KOG0676|consen 192 KRG-------YSFTTSAEFEIVRDIKEKLCYVAL-D---------FEEEEET-ANTS--------------------SS- 232 (372)
T ss_pred hcc-------cccccccHHHHHHHhHhhhccccc-c---------cchhhhc-cccc--------------------cc-
Confidence 754 356667788999999999999986 2 2211110 0000 00
Q ss_pred CCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhcCChhHH
Q 008949 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQ 489 (548)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~D~r 489 (548)
.. .+|+ ++||+.+.++ +||.+||.||+|...| .+..||++++++||.+| ++|+|
T Consensus 233 --l~----~~y~--lPDg~~i~i~~erf~~pE~lFqP~~~g----------------~e~~gi~~~~~~sI~kc-d~dlr 287 (372)
T KOG0676|consen 233 --LE----SSYE--LPDGQKITIGNERFRCPEVLFQPSLLG----------------MESPGIHELTVNSIMKC-DIDLR 287 (372)
T ss_pred --cc----cccc--CCCCCEEecCCcccccchhcCChhhcC----------------CCCCchhHHHHHHHHhC-ChhHh
Confidence 00 1233 6688888886 9999999999987655 56789999999999999 89999
Q ss_pred HhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCccccccccccc
Q 008949 490 RKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFMIKLISC 545 (548)
Q Consensus 490 ~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~~~~~ 545 (548)
++||+||+|+||+|++|||.+||+.||+.+.|+++++ +|.++++|.|++|-+.|=
T Consensus 288 k~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~i-kv~~pp~r~~s~WlGgSI 342 (372)
T KOG0676|consen 288 KDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKI-KVIAPPERKYSAWLGGSI 342 (372)
T ss_pred HHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcce-EEecCcccccceecCcee
Confidence 9999999999999999999999999999999999999 699999999999976653
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=9.6e-58 Score=483.60 Aligned_cols=297 Identities=21% Similarity=0.326 Sum_probs=251.6
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
+.+++|++|... +..+.+++||++|.+. ||++++.||+|+|.++|++++.++ +||+++++++++.
T Consensus 51 ~~~~~g~~~~~~--~~~~~l~~Pi~~G~i~---------d~d~~e~i~~~~~~~~l~v~~~~~----pvllte~~~~~~~ 115 (378)
T PTZ00004 51 KDCYVGDEAQDK--RGILTLKYPIEHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----PVLLTEAPLNPKA 115 (378)
T ss_pred CceEECchhhcc--cccceEcccCcCCEEc---------CHHHHHHHHHHHHHhhcccCCccC----cceeecCCCCcHH
Confidence 357899998754 3568999999999998 999999999999988899988888 8999999988777
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.|+ ++|+|||.|+|++++++.+++||+|++|++||||||+|++.|+|+||+||+++.++..++++||+++|++|.++|+
T Consensus 116 ~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~ 195 (378)
T PTZ00004 116 NREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILH 195 (378)
T ss_pred HHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHH
Confidence 775 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcccCCCCC
Q 008949 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (548)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~ 410 (548)
.++. .+....+..+++++||++|+|+.+ .+. ...... .+ . +.
T Consensus 196 ~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d-~~~--~~~~~~--~~--~-----------------------~~- 237 (378)
T PTZ00004 196 ERGT-------TFTTTAEKEIVRDIKEKLCYIALD-FDE--EMGNSA--GS--S-----------------------DK- 237 (378)
T ss_pred hcCC-------CCCcHHHHHHHHHHhhcceeecCC-HHH--HHhhhh--cC--c-----------------------cc-
Confidence 7642 244445678999999999999752 100 000000 00 0 00
Q ss_pred CCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccc-CCCHHHHHHHHHhhcCChhH
Q 008949 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEE-KIGLAEAVTSSILSTGRIDL 488 (548)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~-~~gL~eaI~~SI~~c~~~D~ 488 (548)
.. ..| .+|||..+.++ +|+.+||.||.|...+ .+ ..||+++|.+||.+| |.|+
T Consensus 238 --~~----~~y--~lPdg~~i~l~~er~~~~E~LF~P~~~~----------------~~~~~gi~~~i~~sI~~~-~~d~ 292 (378)
T PTZ00004 238 --YE----ESY--ELPDGTIITVGSERFRCPEALFQPSLIG----------------KEEPPGIHELTFQSINKC-DIDI 292 (378)
T ss_pred --cc----eEE--ECCCCCEEEEcHHHeeCcccccChhhcC----------------ccccCChHHHHHHHHHhC-ChhH
Confidence 00 112 46788888887 9999999999986543 23 679999999999999 8999
Q ss_pred HHhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCccccccccccccC
Q 008949 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFMIKLISCFG 547 (548)
Q Consensus 489 r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~~~~~~~ 547 (548)
|+.|++||+|+||+|++|||.+||+.||++++|..+++ +|.+.++|+|++|++.|-++
T Consensus 293 r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~-~v~~~~~~~~~aW~Ggsila 350 (378)
T PTZ00004 293 RKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKI-KVVAPPERKYSVWIGGSILS 350 (378)
T ss_pred HHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccE-EEecCCCCceeEEECccccc
Confidence 99999999999999999999999999999999998888 68899999999999888664
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=4.3e-56 Score=476.41 Aligned_cols=302 Identities=22% Similarity=0.299 Sum_probs=245.0
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
.++++|++|+... ..+.++|||++|.+. |||++|.||+|+|.+.|++++.++ ++|++++++++..
T Consensus 52 ~~~~vG~ea~~~~--~~~~l~~Pi~~G~I~---------dwd~~e~l~~~~~~~~L~~~p~~~----~vllte~~~~~~~ 116 (414)
T PTZ00280 52 LDFYIGDEALAAS--KSYTLTYPMKHGIVE---------DWDLMEKFWEQCIFKYLRCEPEEH----YFILTEPPMNPPE 116 (414)
T ss_pred CCEEEcchhhhCc--CCcEEecCccCCEeC---------CHHHHHHHHHHHHHHhhccCCCCC----ceEEeeCCCCcHH
Confidence 3578999998764 579999999999998 999999999999988999999888 8999999988777
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhc----------CCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGN----------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGED 320 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~----------G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~ 320 (548)
.|+ ++|+|||.|++++++++.+++||+||+ |+++|||||+|++.|+|+||+||+++.++..++++||++
T Consensus 117 ~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~ 196 (414)
T PTZ00280 117 NREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRD 196 (414)
T ss_pred HHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHH
Confidence 666 999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCC-CcceeeeeecCCCCCc
Q 008949 321 ISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPPMGL 399 (548)
Q Consensus 321 it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~~~~~aP~~l 399 (548)
||++|.++|++++. ++....+..++++|||++||++.+-. .++..+.. .+.. ..++. .|
T Consensus 197 lt~~L~~lL~~~~~-------~~~~~~~~~~~~~iKe~~c~v~~d~~---~e~~~~~~-~~~~~~~~~~------~~--- 256 (414)
T PTZ00280 197 ITNFIQQMLRERGE-------PIPAEDILLLAQRIKEKYCYVAPDIA---KEFEKYDS-DPKNHFKKYT------AV--- 256 (414)
T ss_pred HHHHHHHHHHHcCC-------CCCcHHHHHHHHHHHHhcCcccCcHH---HHHHHhhc-CcccccceEE------CC---
Confidence 99999999977652 23333567899999999999986311 11111110 0100 00000 00
Q ss_pred cCCcccCCCCCCCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHH
Q 008949 400 FYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTS 478 (548)
Q Consensus 400 f~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~ 478 (548)
|. ....+..+.++ +||.+||.||.|...+. ....||+++|.+
T Consensus 257 --------------------d~--~~g~~~~i~l~~erf~~~E~LF~P~~~~~---------------~~~~gl~e~i~~ 299 (414)
T PTZ00280 257 --------------------NS--VTKKPYTVDVGYERFLGPEMFFHPEIFSS---------------EWTTPLPEVVDD 299 (414)
T ss_pred --------------------CC--CCCCccEEEechHHhcCcccccChhhcCC---------------ccCCCHHHHHHH
Confidence 00 00112345666 89999999998864321 224599999999
Q ss_pred HHhhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHhhhCC----------------CCCccceEEeCCCcccccccc
Q 008949 479 SILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIP----------------SNEAIDMVEVSSHLFFFMIKL 542 (548)
Q Consensus 479 SI~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p----------------~~~~v~~V~~~~~R~~~~~~~ 542 (548)
||.+| |+|+|++||+||+|+||+|+||||.+||++||++++| ..+++ +|.++++|+|++|++
T Consensus 300 sI~~~-~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~~~~~~~~W~G 377 (414)
T PTZ00280 300 AIQSC-PIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDV-NVVSHPRQRYAVWYG 377 (414)
T ss_pred HHHhC-ChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceE-EEecCCccceeEEEC
Confidence 99999 8999999999999999999999999999999999974 45667 588889999999998
Q ss_pred ccccC
Q 008949 543 ISCFG 547 (548)
Q Consensus 543 ~~~~~ 547 (548)
.|-++
T Consensus 378 gSila 382 (414)
T PTZ00280 378 GSMLA 382 (414)
T ss_pred hhhcc
Confidence 87654
No 8
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=2.3e-57 Score=434.96 Aligned_cols=290 Identities=23% Similarity=0.389 Sum_probs=250.8
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
++..+||||-.+. +-+.+.|||.+|.+. ||+||+.+|+|+|.++|+|+|++. .+|++++++|+..
T Consensus 51 KD~mvGdeaselR--s~L~i~YPmeNGivr---------nwddM~h~WDytF~ekl~idp~~~----KiLLTePPmNP~k 115 (389)
T KOG0677|consen 51 KDLMVGDEASELR--SLLDINYPMENGIVR---------NWDDMEHVWDYTFGEKLKIDPTNC----KILLTEPPMNPTK 115 (389)
T ss_pred hhheccchHHHHH--HHHhcCCcccccccc---------ChHHHHHHHHhhhhhhccCCCccC----eEEeeCCCCCccc
Confidence 6789999998764 567899999999998 999999999999999999999998 7999999999877
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.|+ |+|++||+++|.++|++.++++++|+-|+.||+|||+|.+.|+||||+||+++++-..|++++|+|+|.||.+||.
T Consensus 116 NREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl 195 (389)
T KOG0677|consen 116 NREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLL 195 (389)
T ss_pred cHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHH
Confidence 776 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcccCCCCC
Q 008949 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (548)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~ 410 (548)
.++ +.++...|++.++++||++||++-+ + +.+ .|....+ .++ -
T Consensus 196 ~rG-------YafN~tADFETVR~iKEKLCYisYd-~---------e~e-----~kLalET-----------TvL-v--- 238 (389)
T KOG0677|consen 196 RRG-------YAFNHTADFETVREIKEKLCYISYD-L---------ELE-----QKLALET-----------TVL-V--- 238 (389)
T ss_pred hhc-------cccccccchHHHHHHHhhheeEeec-h---------hhh-----hHhhhhh-----------eee-e---
Confidence 876 5688889999999999999999842 1 100 0000000 001 0
Q ss_pred CCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhcCChhHH
Q 008949 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQ 489 (548)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~D~r 489 (548)
..| .+|||..+.++ |||.+||.||+|.... .+..|+.++++++|+.+ ++|.|
T Consensus 239 --------~~Y--tLPDGRvIkvG~ERFeAPE~LFqP~Li~----------------VE~~G~aellF~~iQaa-DiD~R 291 (389)
T KOG0677|consen 239 --------ESY--TLPDGRVIKVGGERFEAPEALFQPHLIN----------------VEGPGVAELLFNTIQAA-DIDIR 291 (389)
T ss_pred --------eee--ecCCCcEEEecceeccCchhhcCcceec----------------cCCCcHHHHHHHHHHHh-ccchH
Confidence 112 57799999997 9999999999986543 46789999999999999 89999
Q ss_pred HhhhcCeEEecCCCCcCChHHHHHHHHhhhCC-----------CCCccceEEeCCCccccccc
Q 008949 490 RKLFCSIQLIGGVALTGGLIPAVEERVLHAIP-----------SNEAIDMVEVSSHLFFFMIK 541 (548)
Q Consensus 490 ~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p-----------~~~~v~~V~~~~~R~~~~~~ 541 (548)
..||.+|+|+||+++.||+..||+.||+++.- ..+++ +|+.+|.|++.++-
T Consensus 292 ~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~Kfki-RIEdPPrRKhMVfl 353 (389)
T KOG0677|consen 292 SELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKI-RIEDPPRRKHMVFL 353 (389)
T ss_pred HHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEE-eccCCCccceeEEE
Confidence 99999999999999999999999999998641 23567 69999999998763
No 9
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=1.8e-54 Score=435.40 Aligned_cols=325 Identities=20% Similarity=0.294 Sum_probs=243.8
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
+.+|+|++|+..+ ++++.+..||++|.+. |||.++.+|+|+|.++|.++|.++ |+|+++++||.++
T Consensus 55 ~~~y~~~~ai~~p-r~gmEv~~~i~nGlv~---------dWD~~~~~w~~~~~~~Lk~~p~eh----P~litEp~wN~~~ 120 (426)
T KOG0679|consen 55 KGYYVDENAIHVP-RPGMEVKTPIKNGLVE---------DWDLFEMQWRYAYKNQLKVNPEEH----PVLITEPPWNTRA 120 (426)
T ss_pred cceEeechhccCC-CCCCeeccchhcCCcc---------cHHHHHHHHHHHHhhhhhcCcccc----ceeeecCCCCcHH
Confidence 4589999999876 5799999999999998 999999999999998999999998 9999999999999
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.|+ ++|++||+|+||+++++.+++|++|++|++||||||||+..|+|+||+||+++.++.++.++||+.|+..++++|+
T Consensus 121 ~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~ 200 (426)
T KOG0679|consen 121 NREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLE 200 (426)
T ss_pred HHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHh
Confidence 887 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCC--CCCcc--------cccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCcc
Q 008949 331 HHQT--WPQIR--------TDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLF 400 (548)
Q Consensus 331 ~~~~--~p~~~--------~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf 400 (548)
..+. .|.|. .....+..-....+++++.+|+.....+ |. ..|..+.. .+..-|
T Consensus 201 ~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v--------~~------e~ke~v~q---v~dtp~ 263 (426)
T KOG0679|consen 201 PKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRV--------YQ------EFKESVLQ---VSDTPF 263 (426)
T ss_pred hcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHH--------HH------HHHHHHHh---ccCCCC
Confidence 7642 33221 0000000001122333333333332100 00 00000000 011112
Q ss_pred CCcccCCCCCCCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHH
Q 008949 401 YPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSS 479 (548)
Q Consensus 401 ~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~S 479 (548)
+.++. ...|+.+ ..+|||+...++ +||++||.||.|+.... ..+............|+.+++.+|
T Consensus 264 de~~~----~~i~~~~------~efP~g~~~~~G~er~ripe~lF~Ps~v~~----~s~~~~~~~~~n~~lG~~~lv~sS 329 (426)
T KOG0679|consen 264 DEEVA----AQIPTKH------FEFPDGYTLDFGAERFRIPEYLFKPSLVKS----SSKEAGATSHINTMLGLPHLVYSS 329 (426)
T ss_pred ccccc----ccCCCcc------ccCCCCcccccCcceeecchhhcCcchhcc----ccccccCCCCCccccCchHHHHhh
Confidence 11111 0122222 246789988888 99999999998764310 000000011113467999999999
Q ss_pred HhhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCC---Ccccccccccc
Q 008949 480 ILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSS---HLFFFMIKLIS 544 (548)
Q Consensus 480 I~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~---~R~~~~~~~~~ 544 (548)
|..| |.|+|..||+||||+||+|+|+||.+||+.||+.+.|+. |+ ++.+.. +|+|++|-+-|
T Consensus 330 i~~c-DvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rl-ki~as~~t~eR~~~~WlGGS 394 (426)
T KOG0679|consen 330 INMC-DVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RL-KIIASGHTVERRFQSWLGGS 394 (426)
T ss_pred hccC-hHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eE-EEEecCceeeehhhhhhhhH
Confidence 9999 899999999999999999999999999999999999987 88 466653 99999996544
No 10
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=5.3e-54 Score=456.95 Aligned_cols=307 Identities=25% Similarity=0.397 Sum_probs=237.6
Q ss_pred ceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHHH
Q 008949 173 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREI 252 (548)
Q Consensus 173 ~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~~ 252 (548)
++++|++++. +...+.+++|+++|.+. ||++++.+|+|+|.+.|++++.++ +||++++++.+...
T Consensus 45 ~~~~g~~~~~--~~~~~~~~~p~~~g~i~---------~~~~~e~i~~~~~~~~l~~~~~~~----~vll~~~~~~~~~~ 109 (393)
T PF00022_consen 45 DYYVGDEALS--PRSNLELRSPIENGVIV---------DWDALEEIWDYIFSNLLKVDPSDH----PVLLTEPPFNPRSQ 109 (393)
T ss_dssp SCEETHHHHH--TGTGEEEEESEETTEES---------SHHHHHHHHHHHHHTTT-SSGGGS----EEEEEESTT--HHH
T ss_pred eEEeeccccc--chhheeeeeeccccccc---------cccccccccccccccccccccccc----eeeeeccccCCchh
Confidence 4678888655 24689999999999998 999999999999988899988887 89999888877666
Q ss_pred HH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHHh
Q 008949 253 KE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRH 331 (548)
Q Consensus 253 r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~~ 331 (548)
|+ ++++|||.|+|++++++++++||+|++|.+||||||+|++.|+|+||+||+++.++..++++||+++|++|.++|+.
T Consensus 110 r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~ 189 (393)
T PF00022_consen 110 REKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKE 189 (393)
T ss_dssp HHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHh
Confidence 65 99999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC--CCCcc--------cccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccC
Q 008949 332 HQT--WPQIR--------TDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFY 401 (548)
Q Consensus 332 ~~~--~p~~~--------~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~ 401 (548)
++. .|.+. ...+....+..+++++|+++|+|+.......... ....+ .
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~---~~~~~--~----------------- 247 (393)
T PF00022_consen 190 RNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQ---ASENP--E----------------- 247 (393)
T ss_dssp T-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHH---HCSTT--T-----------------
T ss_pred hccccccccccccccccccccccchhhhccchhccchhhhcccccccccccc---ccccc--c-----------------
Confidence 531 11110 1123334578899999999999997432100000 00000 0
Q ss_pred CcccCCCCCCCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHH
Q 008949 402 PKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 480 (548)
Q Consensus 402 p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI 480 (548)
.+| .+|||..+.++ +|+.++|.||.|...+.... .......||+++|.+||
T Consensus 248 -----------------~~~--~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~---------~~~~~~~gL~~~I~~si 299 (393)
T PF00022_consen 248 -----------------KSY--ELPDGQTIILGKERFRIPEILFNPSLIGIDSA---------SEPSEFMGLPELILDSI 299 (393)
T ss_dssp -----------------EEE--E-TTSSEEEESTHHHHHHHTTTSGGGGTSSST---------S---SSSCHHHHHHHHH
T ss_pred -----------------eec--cccccccccccccccccccccccccccccccc---------ccccccchhhhhhhhhh
Confidence 111 34577777776 89999999998875431000 00023459999999999
Q ss_pred hhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCC-Ccccccccccccc
Q 008949 481 LSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSS-HLFFFMIKLISCF 546 (548)
Q Consensus 481 ~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~-~R~~~~~~~~~~~ 546 (548)
.+| +.|+|+.|++||+|+||+|++|||.+||++||+.+.|...++ +|.+.+ +|.|++|++.|-+
T Consensus 300 ~~~-~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~-~v~~~~~~~~~~aW~Ggsil 364 (393)
T PF00022_consen 300 SKC-PIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKV-KVIAPPSDRQFAAWIGGSIL 364 (393)
T ss_dssp HTS-TTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTE-EEE--T-TTTSHHHHHHHHH
T ss_pred hcc-ccccccccccceEEecccccccchHHHHHHHhhhhhhccccc-eeccCchhhhhcccccceee
Confidence 999 899999999999999999999999999999999999998999 698988 9999999887644
No 11
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=6.6e-52 Score=438.30 Aligned_cols=299 Identities=21% Similarity=0.343 Sum_probs=246.5
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
+.+++|++|.... ..+.++||+++|.+. ||++++.+|+|+|.+.|++++.++ +|+++++.+.+..
T Consensus 45 ~~~~~G~~a~~~~--~~~~~~~P~~~G~i~---------d~~~~e~i~~~~~~~~l~~~~~~~----~vll~~p~~~~~~ 109 (373)
T smart00268 45 KDTFVGDEAQEKR--GGLELKYPIEHGIVE---------NWDDMEKIWDYTFFNELRVEPEEH----PVLLTEPPMNPKS 109 (373)
T ss_pred cceEecchhhhcC--CCceecCCCcCCEEe---------CHHHHHHHHHHHHhhhcCCCCccC----eeEEecCCCCCHH
Confidence 3578999986543 456899999999998 999999999999987899988777 8999888877555
Q ss_pred HH-HHHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHH
Q 008949 252 IK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 252 ~r-~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.| +++++|||.|+|++++++.+++||+||+|.++|||||+|++.|+|+||+||+++.++..++++||+++|++|.++|+
T Consensus 110 ~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~ 189 (373)
T smart00268 110 NREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLS 189 (373)
T ss_pred HHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHH
Confidence 55 49999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcccCCCCC
Q 008949 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (548)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~ 410 (548)
..+. .+....+..+++++||++|+++...... ........ .+. ..
T Consensus 190 ~~~~-------~~~~~~~~~~~~~iKe~~~~v~~~~~~~---~~~~~~~~--------------~~~-----------~~ 234 (373)
T smart00268 190 ERGY-------QFNSSAEFEIVREIKEKLCYVAEDFEKE---MKKARESS--------------ESS-----------KL 234 (373)
T ss_pred hcCC-------CCCcHHHHHHHHHhhhheeeecCChHHH---HHHhhhcc--------------ccc-----------cc
Confidence 6431 1223456789999999999998631100 00000000 000 00
Q ss_pred CCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhcCChhHH
Q 008949 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQ 489 (548)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~D~r 489 (548)
. ..| .++||..+.++ +|+.++|.||+|...+ .+..||+++|.++|.+| |.|+|
T Consensus 235 ---~----~~~--~lpdg~~~~~~~er~~~~E~lf~p~~~~----------------~~~~~i~~~i~~~i~~~-~~d~r 288 (373)
T smart00268 235 ---E----KTY--ELPDGNTIKVGNERFRIPEILFKPELIG----------------LEQKGIHELVYESIQKC-DIDVR 288 (373)
T ss_pred ---c----eeE--ECCCCCEEEEChHHeeCchhcCCchhcC----------------CCcCCHHHHHHHHHHhC-CHhHH
Confidence 0 011 35677777776 8999999999886544 34569999999999999 89999
Q ss_pred HhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCccccccccccccC
Q 008949 490 RKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFMIKLISCFG 547 (548)
Q Consensus 490 ~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~~~~~~~ 547 (548)
++|++||+|+||+|++|||.+||++||+.++|..+++ +|...++|+|++|++.|-++
T Consensus 289 ~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v-~v~~~~~~~~~~W~G~sila 345 (373)
T smart00268 289 KDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKV-KVIAPPERKYSVWLGGSILA 345 (373)
T ss_pred HHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCcee-EEecCCCCccceEeCccccc
Confidence 9999999999999999999999999999999988888 68888999999999988654
No 12
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=4.6e-51 Score=431.69 Aligned_cols=298 Identities=23% Similarity=0.350 Sum_probs=246.3
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
+.+++|++|...... .+.++||+++|.+. ||++++.+|+|+|.+.|.++++++ +|+++++.+.++.
T Consensus 44 ~~~~~G~~a~~~~~~-~~~~~~P~~~G~i~---------d~~~~e~~~~~~~~~~l~~~~~~~----~vvl~~p~~~~~~ 109 (371)
T cd00012 44 KDYFVGEEALEKRGL-GLELIYPIEHGIVV---------DWDDMEKIWDHLFFNELKVNPEEH----PVLLTEPPLNPKS 109 (371)
T ss_pred CceEEchhhhhCCCC-ceEEcccccCCEEe---------CHHHHHHHHHHHHHHhcCCCCCCC----ceEEecCCCCCHH
Confidence 467899999887643 79999999999998 999999999999988888887776 7888877776655
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.|+ ++++|||.+++++++++.+++||+|++|.++|||||+|++.|+|+||+||+++.++..++++||+++|++|.++|+
T Consensus 110 ~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~ 189 (371)
T cd00012 110 NREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLR 189 (371)
T ss_pred HHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHH
Confidence 554 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcccCCCCC
Q 008949 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (548)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~ 410 (548)
.++. .+....+..++++|||++|+++........ ... .+.. ...
T Consensus 190 ~~~~-------~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~---~~~--~~~~-----------------------~~~- 233 (371)
T cd00012 190 ERGY-------ELNSSDEREIVRDIKEKLCYVALDIEEEQD---KSA--KETS-----------------------LLE- 233 (371)
T ss_pred hcCC-------CccchhHHHHHHHHHHhheeecCCHHHHHH---hhh--ccCC-----------------------ccc-
Confidence 7642 234456788999999999999863211000 000 0000 000
Q ss_pred CCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhcCChhHH
Q 008949 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQ 489 (548)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~D~r 489 (548)
..| .+||+..+.++ +|+.++|.||+|...+ ....+|+++|.++|.+| +.|.|
T Consensus 234 --------~~~--~lpd~~~i~~~~er~~~~E~lF~p~~~~----------------~~~~~i~~~i~~~i~~~-~~~~~ 286 (371)
T cd00012 234 --------KTY--ELPDGRTIKVGNERFRAPEILFNPSLIG----------------SEQVGISEAIYSSINKC-DIDLR 286 (371)
T ss_pred --------eeE--ECCCCeEEEEChHHhhChHhcCChhhcC----------------CCcCCHHHHHHHHHHhC-CHhHH
Confidence 011 34577777776 8999999999876433 34679999999999999 89999
Q ss_pred HhhhcCeEEecCCCCcCChHHHHHHHHhhhCCC--CCccceEEeCCCccccccccccccC
Q 008949 490 RKLFCSIQLIGGVALTGGLIPAVEERVLHAIPS--NEAIDMVEVSSHLFFFMIKLISCFG 547 (548)
Q Consensus 490 ~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~--~~~v~~V~~~~~R~~~~~~~~~~~~ 547 (548)
+.+++||+|+||+|++|||.+||++||..++|. ...+ ++....+|.|++|++.|-++
T Consensus 287 ~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~-~~~~~~~~~~~aw~G~si~a 345 (371)
T cd00012 287 KDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKV-KVIAPPERKYSVWLGGSILA 345 (371)
T ss_pred HHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEE-EEccCCCccccEEeCchhhc
Confidence 999999999999999999999999999999997 4445 46677899999999988765
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.1e-49 Score=424.75 Aligned_cols=333 Identities=21% Similarity=0.269 Sum_probs=258.1
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhh--hcCCCCCCCCccceEEEccCCCCh
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE--KLHIPRSERNLYSAILVLPESFDN 249 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~--~L~i~~~d~~~~~~VLvi~~~~~~ 249 (548)
++.++|+++....+...+.+++|+.+|.+. ||++++.+|+|+|.. .+..++.++ ++++++++++.
T Consensus 52 ~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~---------~W~~~e~~w~~~~~~~~~~~~~~~~~----pllltep~~n~ 118 (444)
T COG5277 52 KDTYVGNEAQNDRDNSLLELRYPIENGIIL---------NWDAMEQIWDYTFFNKGDLLPSPEEH----PLLLTEPPLNP 118 (444)
T ss_pred cccccCchhhhccCCccceeecccccCccC---------CcHHHHHHHHHhhcchhhccCCCcCC----ceEEeccCCCc
Confidence 456799998877655689999999999998 999999999999987 577778888 89999999998
Q ss_pred HHHHH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCc--eEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHH
Q 008949 250 REIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLS--TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (548)
Q Consensus 250 ~~~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~--tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~ 326 (548)
...|+ +++++||.|+|+++++..+++|++|+.|.+ +|||||+|++.|+|+||+||+++.++..++++||+++|.+|.
T Consensus 119 ~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~ 198 (444)
T COG5277 119 PSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLK 198 (444)
T ss_pred HHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHH
Confidence 88876 999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccccccc---ccHHHHHHHHHHce-------eccCCccchhhhhccccCCCCCCCcceeeeeecCCC
Q 008949 327 WTQRHHQTWPQIRTDILTKA---MDLLMLNRIKESYC-------EIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPP 396 (548)
Q Consensus 327 ~lL~~~~~~p~~~~~~l~~~---~d~~l~e~iKe~~c-------~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP 396 (548)
++|..... +.+.+.+... .++++++.+|+++| |++..-. ...+... +.+ ..+ +.
T Consensus 199 ~lL~~~~~--~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~---~~~~e~~-~~~--~~~--------~~ 262 (444)
T COG5277 199 KLLREKYP--PSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAE---EEFEEEE-EKP--AEK--------ST 262 (444)
T ss_pred HHHhhccc--ccCCcccccccccccHHHHHHHHHhhccccccccchhhcch---HHHHHHh-hhh--hhh--------cc
Confidence 99987542 2344556555 78999999999999 4443100 0011000 001 000 00
Q ss_pred CCccCCcccCCCCCCCCCCCCCCCccccCCCCcccccC-C-CCCCCCCCCCCC--CCCCCCCCC----C-------CccC
Q 008949 397 MGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-R-RSDISDNFYPGI--NVGLPMWES----Y-------PVLT 461 (548)
Q Consensus 397 ~~lf~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-e-R~~~~E~lf~~~--~~~~~~~~~----~-------~~~~ 461 (548)
...|.+ ..+.. ..+ . ....+++..+.+. + ||.+||.+|.+. ..++..... . ....
T Consensus 263 ~~~~~~---~~~~~--~~~---~--~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~ 332 (444)
T COG5277 263 ESTFQL---SKETS--IAK---E--SKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEIS 332 (444)
T ss_pred cccccc---cchhc--ccc---c--cccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccc
Confidence 000000 00000 000 0 1245577778775 7 999999999886 444221110 0 0112
Q ss_pred CCCCcccCCCHHHHHHHHHhhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCccccccc
Q 008949 462 TKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFMIK 541 (548)
Q Consensus 462 ~~~~~~~~~gL~eaI~~SI~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~ 541 (548)
+.....+..||++++.+||..| +.|.|+.||+||+|+||+|++|||.+||++||+.+.|..+.+ .|..+++|.+.+|+
T Consensus 333 ~~~~~~~~~gl~e~v~~si~~~-~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v-~v~~~~~~~~~~W~ 410 (444)
T COG5277 333 PTNLGNDIAGLPELVYQSIQIC-DEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKV-SVIPPPDPSLDAWL 410 (444)
T ss_pred cccccccccchHHHHHHHHHhc-cHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCce-eeecCCchhhcccc
Confidence 2223356789999999999999 899999999999999999999999999999999999998888 59999999999999
Q ss_pred cccc
Q 008949 542 LISC 545 (548)
Q Consensus 542 ~~~~ 545 (548)
+.|=
T Consensus 411 GaSi 414 (444)
T COG5277 411 GASI 414 (444)
T ss_pred chhh
Confidence 8873
No 14
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=9e-48 Score=378.59 Aligned_cols=309 Identities=18% Similarity=0.251 Sum_probs=238.7
Q ss_pred eEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcC--CCCCCCCccceEEEccCCCChHH
Q 008949 174 FICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLH--IPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 174 ~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~--i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
.|+|++.-.|.+...+..++|+++|.+. +|+-...+|+|+|. ..+ ++-+++ .++++++.++-..
T Consensus 42 ~f~~nei~ec~D~ssL~y~rp~erGyLv---------nW~tq~~vWDy~f~-~~~~~~~~~~~----~ivlTep~~~~ps 107 (400)
T KOG0680|consen 42 SFLANEIDECKDISSLFYRRPHERGYLV---------NWDTQSQVWDYCFG-NPGFDVEGKDH----NIVLTEPCMTFPS 107 (400)
T ss_pred hhhhhhhhhccCccceEEeehhhcceeE---------eehhHHHHHHHHhc-CCCcCcccCcc----eEEEecccccccc
Confidence 3455555555555677889999999999 99999999999995 344 445566 7899999998777
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhh---cCC--------ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFG---NGL--------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGE 319 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~---~G~--------~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~ 319 (548)
+.+ +.|+|||+|+|.+++=...+.+++|. .+. .+++|||+|++.|+|+||.+|.+...+++|+++||+
T Consensus 108 i~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK 187 (400)
T KOG0680|consen 108 IQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGK 187 (400)
T ss_pred hhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchH
Confidence 777 99999999999999999999998876 221 268999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCc
Q 008949 320 DISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGL 399 (548)
Q Consensus 320 ~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~l 399 (548)
.||++|++.+..++ |+-+.+..+++++||.+|||++. ....... .+. ++. ..|... + ++.|.
T Consensus 188 ~LTn~LKE~iSyR~---------lNvmdET~vVNeiKEdvcfVSqn-F~~~m~~-~~~--k~~-~~~~~i-~-YvLPD-- 249 (400)
T KOG0680|consen 188 ALTNLLKETISYRH---------LNVMDETYVVNEIKEDVCFVSQN-FKEDMDI-AKT--KFQ-ENKVMI-D-YVLPD-- 249 (400)
T ss_pred HHHHHHHHHhhhhh---------hcccchhhhhhhhhhheEEechh-hHHHHHH-Hhh--ccc-cceeEE-E-EecCC--
Confidence 99999999997654 33466788999999999999972 1000000 011 110 001111 1 22221
Q ss_pred cCCcc---cCCCCCCCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHH
Q 008949 400 FYPKL---LVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEA 475 (548)
Q Consensus 400 f~p~i---~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~ea 475 (548)
|.... ..++.. ....|.+.+.++ |||.+||.||.|++.| ....||+||
T Consensus 250 F~T~k~Gyvr~~~v------------k~~~d~qii~L~nErF~IPEilF~Psdi~----------------I~q~GIpEA 301 (400)
T KOG0680|consen 250 FSTSKRGYVRNEDV------------KLPEDEQIITLTNERFTIPEILFSPSDIG----------------IQQPGIPEA 301 (400)
T ss_pred cccccceeEecCCC------------CCCCCcceeeecccccccchhhcChhhcC----------------cccCCchHH
Confidence 11100 000110 012356778886 9999999999988765 678999999
Q ss_pred HHHHHhhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCcccccccccc
Q 008949 476 VTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFMIKLIS 544 (548)
Q Consensus 476 I~~SI~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~~~~ 544 (548)
|++||..| |.++|+.|+.||+++||+++||||.+||..||+.++|.++.+ +|..+.+=.-.+|+..|
T Consensus 302 V~esl~~~-Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v-~V~~p~dp~~~~W~~g~ 368 (400)
T KOG0680|consen 302 VLESLSML-PEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEV-SVSVPEDPITFAWEGGS 368 (400)
T ss_pred HHHHHHhC-HHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceE-EEecCCCcceeeehhcc
Confidence 99999999 899999999999999999999999999999999999999999 69999877777887654
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=1.4e-37 Score=306.98 Aligned_cols=296 Identities=22% Similarity=0.315 Sum_probs=232.5
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
-++++|++|+. ...|.|.|||+||.+. +||.||.+|+..+.+.|..+|+|+ -.|+++++.++.+
T Consensus 57 ldf~ig~eal~---~~~ysl~ypiRhg~ve---------~wd~mer~~~q~ifkylr~ePedh----~fLlteppln~pe 120 (415)
T KOG0678|consen 57 LDFFIGDEALD---ATTYSLKYPIRHGQVE---------DWDLMERFWEQCIFKYLRAEPEDH----YFLLTEPPLNQPE 120 (415)
T ss_pred cceecccHHHh---hcccccccceeccccc---------cHHHHHHHHhhhhhhhhcCCcccc----eEEecCCCCCCch
Confidence 46999999998 3589999999999998 999999999999989999999998 6899999999988
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhc------C--CceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGN------G--LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDIS 322 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~------G--~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it 322 (548)
.|+ +.|++||.|+++.++++-++++|+-+. | .-||+|||.|.+.|+|.||.||+++..+...++++|+|+|
T Consensus 121 nreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT 200 (415)
T KOG0678|consen 121 NREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 200 (415)
T ss_pred hhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchh
Confidence 888 999999999999999999999987543 1 2589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCC
Q 008949 323 RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYP 402 (548)
Q Consensus 323 ~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p 402 (548)
-++++||++++.+++. ....+.++.+||++||+.++- +..+..|..+ |....|+ +..+.
T Consensus 201 ~fiQ~llRer~~~iP~-------e~sl~tak~iKe~ycy~cPdi---vkef~k~d~e-p~K~ikq-~~~~~--------- 259 (415)
T KOG0678|consen 201 YFIQQLLREREVGIPP-------EQSLETAKAIKEKYCYTCPDI---VKEFAKYDRE-PAKWIKQ-YTGIN--------- 259 (415)
T ss_pred HHHHHHhhCCCCCCCh-------HHhhhhhHHHHhhhcccCcHH---HHHHHHhccC-HHHHHHH-Hhccc---------
Confidence 9999999888764432 234578999999999998742 2233333322 2111110 00000
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHh
Q 008949 403 KLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSIL 481 (548)
Q Consensus 403 ~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~ 481 (548)
.+.. ..+.++++ +||-.||.+|+|.... .....+|++.|-..|+
T Consensus 260 -~i~~-------------------~~~~vDvgyerFlgpEiff~Pe~a~---------------~d~~~~~~~~vd~~Iq 304 (415)
T KOG0678|consen 260 -VITG-------------------KKFVVDVGYERFLGPEIFFHPEFAN---------------PDFLTPLSEVVDWVIQ 304 (415)
T ss_pred -hhcC-------------------CceeecccHHhhcChhhhcCccccC---------------CccCcchHHHhhhhhh
Confidence 0000 11234455 7999999999876432 0234579999999999
Q ss_pred hcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHhhhCCC-----C----C---ccceEEeCCCc--cccccc
Q 008949 482 STGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPS-----N----E---AIDMVEVSSHL--FFFMIK 541 (548)
Q Consensus 482 ~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~-----~----~---~v~~V~~~~~R--~~~~~~ 541 (548)
+| ++|.||-||+||++.||.+++++|..||++.++.++.. + . .|+ |.++.+. +++||-
T Consensus 305 ~~-pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vd-vqvish~~qr~avwf 376 (415)
T KOG0678|consen 305 HC-PIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVD-VQVLSHLLQRTAVWF 376 (415)
T ss_pred hC-CcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCce-eehhhhhhhhcceec
Confidence 99 99999999999999999999999999999988876531 1 1 243 6666544 789993
No 16
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=3.4e-33 Score=291.12 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=138.5
Q ss_pred CceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHHHHH-HHHHHHHhcCCC
Q 008949 188 PYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFA 266 (548)
Q Consensus 188 ~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~~r~-l~e~lfe~~~~~ 266 (548)
....+.|+.+..+. ||+.+|.|++|+| .+||+++++ +-+|+++|+..+|+.+.|. |.++|||.+|||
T Consensus 79 Rs~~rSPFd~nVvt---------Nwel~E~ilDY~F-~~LG~~~~~--idhPIilTE~laNP~~~R~~m~elLFE~YgvP 146 (645)
T KOG0681|consen 79 RSSPRSPFDRNVVT---------NWELMEQILDYIF-GKLGVDGQG--IDHPIILTEALANPVYSRSEMVELLFETYGVP 146 (645)
T ss_pred hccCCCCCcCCccc---------cHHHHHHHHHHHH-HhcCCCccC--CCCCeeeehhccChHHHHHHHHHHHHHHcCCc
Confidence 34578899998888 9999999999999 699998865 3449999999999999886 999999999999
Q ss_pred eeeeehhhHHHHhhc-CC---ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHHhcCCCCCccccc
Q 008949 267 SAVVHQEGLAAVFGN-GL---STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDI 342 (548)
Q Consensus 267 ~v~~~~e~lla~y~~-G~---~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~ 342 (548)
+|.+--+++.|+|.. +. .+|+||++|++.|+|.||.||..+...+.++++||.+++.||.+||+.+..+
T Consensus 147 ~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~------- 219 (645)
T KOG0681|consen 147 KVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPF------- 219 (645)
T ss_pred ceeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCcc-------
Confidence 999999999999943 33 3699999999999999999999999999999999999999999999876432
Q ss_pred ccccccHHHHHHHHHHceeccC
Q 008949 343 LTKAMDLLMLNRIKESYCEIKE 364 (548)
Q Consensus 343 l~~~~d~~l~e~iKe~~c~v~~ 364 (548)
.-+..++..+|+++..+||++.
T Consensus 220 ~~~~~t~sk~E~l~~eHcyis~ 241 (645)
T KOG0681|consen 220 HLNAFTGSKAERLLHEHCYISP 241 (645)
T ss_pred chhhcCHHHHHHHhhhhceeCc
Confidence 1124678899999999999985
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=9.2e-30 Score=265.46 Aligned_cols=251 Identities=19% Similarity=0.189 Sum_probs=182.1
Q ss_pred ceEEccccccCCC--CCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChH
Q 008949 173 EFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNR 250 (548)
Q Consensus 173 ~~~vG~eAl~~~~--~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~ 250 (548)
.+++|++|..... ...+.+.+||++|.+. ||++++.+|+|++++.+...+.+. ..++++.+.+.+.
T Consensus 46 ~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~e~ll~~~~~~~~~~~~~~~---~~vvit~P~~~~~ 113 (335)
T PRK13930 46 VLAVGEEAKEMLGRTPGNIEAIRPLKDGVIA---------DFEATEAMLRYFIKKARGRRFFRK---PRIVICVPSGITE 113 (335)
T ss_pred EEEEcHHHHHhhhcCCCCeEEeecCCCCeEc---------CHHHHHHHHHHHHHHHhhcccCCC---CcEEEEECCCCCH
Confidence 4689999986532 2468899999999998 999999999999954434223322 2677766655555
Q ss_pred HHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHH
Q 008949 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (548)
Q Consensus 251 ~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L 325 (548)
..|+.+..+||.+|++.++++++++||+|++|. .+++|||+|++.|+|++|.+|.++. ...+++||+++|+.|
T Consensus 114 ~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l 191 (335)
T PRK13930 114 VERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAI 191 (335)
T ss_pred HHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHH
Confidence 556666668999999999999999999999998 4679999999999999999999875 457899999999999
Q ss_pred HHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCccc
Q 008949 326 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLL 405 (548)
Q Consensus 326 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~ 405 (548)
.+++..+.. + ..+...+|++|+++|++....... . ...... . .
T Consensus 192 ~~~l~~~~~--------~--~~~~~~ae~~K~~~~~~~~~~~~~--------------~--~~~~~~-----~-----~- 234 (335)
T PRK13930 192 VQYVRRKYN--------L--LIGERTAEEIKIEIGSAYPLDEEE--------------S--MEVRGR-----D-----L- 234 (335)
T ss_pred HHHHHHHhC--------C--CCCHHHHHHHHHHhhcCcCCCCCc--------------e--EEEECc-----c-----C-
Confidence 998875421 2 123478999999999886521100 0 000000 0 0
Q ss_pred CCCCCCCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhcC
Q 008949 406 VPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTG 484 (548)
Q Consensus 406 ~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~ 484 (548)
... +++ .+.++ +++ .|.+|++ ..++.+.|.++|.+|
T Consensus 235 ---~~~-------------~~~--~~~i~~~~~--~e~i~~~----------------------~~~i~~~i~~~l~~~- 271 (335)
T PRK13930 235 ---VTG-------------LPK--TIEISSEEV--REALAEP----------------------LQQIVEAVKSVLEKT- 271 (335)
T ss_pred ---CCC-------------CCe--eEEECHHHH--HHHHHHH----------------------HHHHHHHHHHHHHhC-
Confidence 000 000 01111 111 2333332 237899999999999
Q ss_pred ChhHHHhhhcC-eEEecCCCCcCChHHHHHHHHh
Q 008949 485 RIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVL 517 (548)
Q Consensus 485 ~~D~r~~L~~n-IvL~GG~S~ipGf~~RL~~eL~ 517 (548)
+.+.+.++++| |+|+||+|++|||.+||++++.
T Consensus 272 ~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~ 305 (335)
T PRK13930 272 PPELAADIIDRGIVLTGGGALLRGLDKLLSEETG 305 (335)
T ss_pred CHHHhhHHHhCCEEEECchhcchhHHHHHHHHHC
Confidence 79999999997 9999999999999999999986
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=1.1e-29 Score=264.93 Aligned_cols=249 Identities=18% Similarity=0.204 Sum_probs=181.1
Q ss_pred ceEEccccccCCC--CCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChH
Q 008949 173 EFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNR 250 (548)
Q Consensus 173 ~~~vG~eAl~~~~--~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~ 250 (548)
.+++|++|.+... ...+.+.+||++|.+. ||+.++.+|+|++.+.+.. ..+++ .++++.+.+.+.
T Consensus 43 ~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~ll~~~~~~~~~~-~~~~~---~~vi~vP~~~~~ 109 (334)
T PRK13927 43 VLAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFDVTEKMLKYFIKKVHKN-FRPSP---RVVICVPSGITE 109 (334)
T ss_pred EEEecHHHHHHhhcCCCCEEEEecCCCCeec---------CHHHHHHHHHHHHHHHhhc-cCCCC---cEEEEeCCCCCH
Confidence 3579999887531 2568899999999998 9999999999999776665 44442 455654554445
Q ss_pred HHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEe-eCCeeecCCceeecccHHHHHHH
Q 008949 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDISRC 324 (548)
Q Consensus 251 ~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV-~dG~~l~~s~~~l~~GG~~it~~ 324 (548)
..|++++.+|+.+|++.++++.+++||+|++|. ..++|||+|+++|++++| ++|++..++ .++||+++|+.
T Consensus 110 ~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~ 186 (334)
T PRK13927 110 VERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEA 186 (334)
T ss_pred HHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHH
Confidence 556789999999999999999999999999997 346999999999999999 788877654 57999999999
Q ss_pred HHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcc
Q 008949 325 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKL 404 (548)
Q Consensus 325 L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i 404 (548)
|.+++.... .+ ..+...+|++|+++|++...+. + ....+. ...+
T Consensus 187 l~~~l~~~~--------~~--~~~~~~ae~iK~~~~~~~~~~~-------------~---~~~~~~-----~~~~----- 230 (334)
T PRK13927 187 IINYVRRNY--------NL--LIGERTAERIKIEIGSAYPGDE-------------V---LEMEVR-----GRDL----- 230 (334)
T ss_pred HHHHHHHHh--------Cc--CcCHHHHHHHHHHhhccCCCCC-------------C---ceEEEe-----Cccc-----
Confidence 999886432 12 1345789999999998764210 0 000000 0000
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhc
Q 008949 405 LVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 483 (548)
Q Consensus 405 ~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c 483 (548)
.. . .++ .+.++ +++ .|.+|++ ...+.++|.++|.+|
T Consensus 231 ~~-~----------------~~~--~~~i~~~~~--~e~i~~~----------------------~~~i~~~i~~~l~~~ 267 (334)
T PRK13927 231 VT-G----------------LPK--TITISSNEI--REALQEP----------------------LSAIVEAVKVALEQT 267 (334)
T ss_pred CC-C----------------CCe--EEEECHHHH--HHHHHHH----------------------HHHHHHHHHHHHHHC
Confidence 00 0 000 11111 111 2333332 237899999999999
Q ss_pred CChhHHHhhhc-CeEEecCCCCcCChHHHHHHHHh
Q 008949 484 GRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVL 517 (548)
Q Consensus 484 ~~~D~r~~L~~-nIvL~GG~S~ipGf~~RL~~eL~ 517 (548)
+.+.++++++ +|+|+||+|++|||.+||++++.
T Consensus 268 -~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~ 301 (334)
T PRK13927 268 -PPELAADIVDRGIVLTGGGALLRGLDKLLSEETG 301 (334)
T ss_pred -CchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC
Confidence 7899999998 59999999999999999999985
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.94 E-value=2.6e-26 Score=239.53 Aligned_cols=253 Identities=17% Similarity=0.169 Sum_probs=183.1
Q ss_pred cceEEccccccCCC--CCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCCh
Q 008949 172 REFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDN 249 (548)
Q Consensus 172 ~~~~vG~eAl~~~~--~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~ 249 (548)
+-+++|++|.+... ...+.+.+||++|.+. ||+.++.+|+|+|.+.+.......+ +++++.+.+.+
T Consensus 43 ~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~~~~~~l~~~~~~~~~~~~---~~vitvP~~~~ 110 (333)
T TIGR00904 43 SILAVGHEAKEMLGKTPGNIVAIRPMKDGVIA---------DFEVTEKMIKYFIKQVHSRKSFFKP---RIVICVPSGIT 110 (333)
T ss_pred eEEEEhHHHHHhhhcCCCCEEEEecCCCCEEE---------cHHHHHHHHHHHHHHHhcccccCCC---cEEEEeCCCCC
Confidence 34789999988632 2578999999999998 9999999999999766654322222 46665555444
Q ss_pred HHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEe-eCCeeecCCceeecccHHHHHH
Q 008949 250 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDISR 323 (548)
Q Consensus 250 ~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV-~dG~~l~~s~~~l~~GG~~it~ 323 (548)
...|+.++.+|+.+|++.++++.+++||+|++|. .+++|||+|++.|+|++| ++|+++..+ .++||+++|+
T Consensus 111 ~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~ 187 (333)
T TIGR00904 111 PVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDE 187 (333)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHH
Confidence 4445678889999999999999999999999998 568999999999999999 788877654 5899999999
Q ss_pred HHHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCc
Q 008949 324 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 403 (548)
Q Consensus 324 ~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~ 403 (548)
.|.+++..+. .+ ..+...+|++|+++|++...... .. . ..+.
T Consensus 188 ~l~~~l~~~~--------~~--~~~~~~ae~lK~~l~~~~~~~~~----------~~---~--~~~~------------- 229 (333)
T TIGR00904 188 AIINYIRRTY--------NL--LIGEQTAERIKIEIGSAYPLNDE----------PR---K--MEVR------------- 229 (333)
T ss_pred HHHHHHHHHh--------cc--cCCHHHHHHHHHHHhcccccccc----------cc---c--eeec-------------
Confidence 9998876431 11 23457899999999987542000 00 0 0000
Q ss_pred ccCCCCCCCCCCCCCCCccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhc
Q 008949 404 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 483 (548)
Q Consensus 404 i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c 483 (548)
..+.. | -++++.. ++ +..+.|.+|++ ...+.+.|.+++.+|
T Consensus 230 --~~~~~----------~--~~~~~~~--i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~ 270 (333)
T TIGR00904 230 --GRDLV----------T--GLPRTIE--IT-SVEVREALQEP----------------------VNQIVEAVKRTLEKT 270 (333)
T ss_pred --Ccccc----------C--CCCeEEE--EC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHhC
Confidence 00000 0 0011111 11 11233444442 236899999999999
Q ss_pred CChhHHHhhhc-CeEEecCCCCcCChHHHHHHHHh
Q 008949 484 GRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVL 517 (548)
Q Consensus 484 ~~~D~r~~L~~-nIvL~GG~S~ipGf~~RL~~eL~ 517 (548)
+.+.+.++++ +|+|+||+|++|||.+||++++.
T Consensus 271 -~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~ 304 (333)
T TIGR00904 271 -PPELAADIVERGIVLTGGGALLRNLDKLLSKETG 304 (333)
T ss_pred -CchhhhhhccCCEEEECcccchhhHHHHHHHHHC
Confidence 7899999997 89999999999999999999995
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.94 E-value=3.3e-25 Score=231.42 Aligned_cols=245 Identities=16% Similarity=0.229 Sum_probs=176.6
Q ss_pred eEEccccccCCCC--CCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhh---hcCCCCCCCCccceEEEccCC-C
Q 008949 174 FICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE---KLHIPRSERNLYSAILVLPES-F 247 (548)
Q Consensus 174 ~~vG~eAl~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~---~L~i~~~d~~~~~~VLvi~~~-~ 247 (548)
++||++|.....+ ....+.+||++|.+. ||+.++.+|+|++.+ .++.++... .++++.+. +
T Consensus 43 ~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~---------d~d~~~~~l~~~~~~~~~~l~~~~~~~----~vvitvP~~~ 109 (335)
T PRK13929 43 LAIGTEAKNMIGKTPGKIVAVRPMKDGVIA---------DYDMTTDLLKQIMKKAGKNIGMTFRKP----NVVVCTPSGS 109 (335)
T ss_pred EEeCHHHHHhhhcCCCcEEEEecCCCCccC---------CHHHHHHHHHHHHHHHHHhcCCCCCCC----eEEEEcCCCC
Confidence 6799999876422 568889999999998 999999999999963 566655434 56665444 5
Q ss_pred ChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEe-eCCeeecCCceeecccHHHH
Q 008949 248 DNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDI 321 (548)
Q Consensus 248 ~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV-~dG~~l~~s~~~l~~GG~~i 321 (548)
+..+.+.+.+ +|+.+|++.++++.+++||+|++|. .+++|||+|+++|++++| ++|..... .+++||+++
T Consensus 110 ~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~---~~~~GG~~i 185 (335)
T PRK13929 110 TAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCH---SIRIGGDQL 185 (335)
T ss_pred CHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEec---CcCCHHHHH
Confidence 6665555777 8999999999999999999999984 568999999999999999 66666543 368999999
Q ss_pred HHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccC
Q 008949 322 SRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFY 401 (548)
Q Consensus 322 t~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~ 401 (548)
|+.|.+++.... ++. .+...+|++|+++|++.....+. . ..... ..+
T Consensus 186 d~~l~~~l~~~~--------~~~--~~~~~AE~iK~~l~~~~~~~~~~--------------~--~~v~g-----~~~-- 232 (335)
T PRK13929 186 DEDIVSFVRKKY--------NLL--IGERTAEQVKMEIGYALIEHEPE--------------T--MEVRG-----RDL-- 232 (335)
T ss_pred HHHHHHHHHHHh--------CcC--cCHHHHHHHHHHHcCCCCCCCCc--------------e--EEEeC-----Ccc--
Confidence 999999886532 121 24578999999999875321000 0 00000 000
Q ss_pred CcccCCCCCCCCCCCCCCCccccCCCCcccccC-CCCC--CCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHH
Q 008949 402 PKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSD--ISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTS 478 (548)
Q Consensus 402 p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-eR~~--~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~ 478 (548)
. ...| ..+.++ +++. ++|.+ ..|.++|.+
T Consensus 233 ----~---~~~p---------------~~i~i~~~~~~~~i~~~l--------------------------~~i~~~i~~ 264 (335)
T PRK13929 233 ----V---TGLP---------------KTITLESKEIQGAMRESL--------------------------LHILEAIRA 264 (335)
T ss_pred ----C---CCCC---------------eEEEEcHHHHHHHHHHHH--------------------------HHHHHHHHH
Confidence 0 0000 001111 1111 11111 248899999
Q ss_pred HHhhcCChhHHHhhhc-CeEEecCCCCcCChHHHHHHHHh
Q 008949 479 SILSTGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVL 517 (548)
Q Consensus 479 SI~~c~~~D~r~~L~~-nIvL~GG~S~ipGf~~RL~~eL~ 517 (548)
++.+| +.+++.++++ +|+|+||+|++|||.+||++++.
T Consensus 265 ~L~~~-~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~ 303 (335)
T PRK13929 265 TLEDC-PPELSGDIVDRGVILTGGGALLNGIKEWLSEEIV 303 (335)
T ss_pred HHHhC-CcccchhhcCCCEEEEchhhhhhhHHHHHHHHHC
Confidence 99999 7999999998 79999999999999999999996
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.90 E-value=3.4e-23 Score=213.61 Aligned_cols=249 Identities=19% Similarity=0.295 Sum_probs=168.6
Q ss_pred ceEEccccccCCCC--CCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEE-ccCCCCh
Q 008949 173 EFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILV-LPESFDN 249 (548)
Q Consensus 173 ~~~vG~eAl~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLv-i~~~~~~ 249 (548)
-+.+|++|..+-.+ ..+.+.||+++|.+. |++..+.+++|++++.++-..-..+ .+++ +|...+.
T Consensus 39 i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~---------D~~~~~~~l~~~l~k~~~~~~~~~p---~vvi~vP~~~T~ 106 (326)
T PF06723_consen 39 ILAVGDEAKAMLGKTPDNIEVVRPLKDGVIA---------DYEAAEEMLRYFLKKALGRRSFFRP---RVVICVPSGITE 106 (326)
T ss_dssp EEEESHHHHTTTTS-GTTEEEE-SEETTEES---------SHHHHHHHHHHHHHHHHTSS-SS-----EEEEEE-SS--H
T ss_pred EEEEhHHHHHHhhcCCCccEEEccccCCccc---------CHHHHHHHHHHHHHHhccCCCCCCC---eEEEEeCCCCCH
Confidence 35699999886543 589999999999998 9999999999999766553221221 3444 5777777
Q ss_pred HHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHH
Q 008949 250 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 324 (548)
Q Consensus 250 ~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~-----tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~ 324 (548)
.+.|.+.+.+ ...|+.+++++.+|+||++|+|.. ..+|||||+++|.|+-+..|-++. ...+.+||+++++.
T Consensus 107 verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~--s~si~~gG~~~Dea 183 (326)
T PF06723_consen 107 VERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA--SRSIRIGGDDIDEA 183 (326)
T ss_dssp HHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHH
T ss_pred HHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE--EEEEEecCcchhHH
Confidence 7765566665 679999999999999999999962 359999999999999999888775 47789999999999
Q ss_pred HHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhh--ccccCCCCCCCcceeeeeecCCCCCccCC
Q 008949 325 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVV--HSYEDGMPPGSHKTRLIALNVPPMGLFYP 402 (548)
Q Consensus 325 L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~--~~~~~~~p~~~~k~~~~~~~~aP~~lf~p 402 (548)
+.+.+++++ ++ ..+...+|+||++++++.....+....+ .+...++|.. ....
T Consensus 184 I~~~ir~~y--------~l--~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~---~~i~------------ 238 (326)
T PF06723_consen 184 IIRYIREKY--------NL--LIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKS---IEIT------------ 238 (326)
T ss_dssp HHHHHHHHH--------SE--E--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEE---EEEE------------
T ss_pred HHHHHHHhh--------Cc--ccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEE---EEEc------------
Confidence 999998763 33 4677899999999988765321110101 1111222210 0000
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhh
Q 008949 403 KLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILS 482 (548)
Q Consensus 403 ~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~ 482 (548)
.. .+.+.+- .....|.++|.+.+.+
T Consensus 239 ---~~------------------------------ev~~ai~----------------------~~~~~I~~~i~~~Le~ 263 (326)
T PF06723_consen 239 ---SS------------------------------EVREAIE----------------------PPVDQIVEAIKEVLEK 263 (326)
T ss_dssp ---HH------------------------------HHHHHHH----------------------HHHHHHHHHHHHHHHT
T ss_pred ---HH------------------------------HHHHHHH----------------------HHHHHHHHHHHHHHHh
Confidence 00 0000010 0123688999999999
Q ss_pred cCChhHHHhhhc-CeEEecCCCCcCChHHHHHHHHh
Q 008949 483 TGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVL 517 (548)
Q Consensus 483 c~~~D~r~~L~~-nIvL~GG~S~ipGf~~RL~~eL~ 517 (548)
| |+++..+++. +|+|+||+|+++||+++|++++.
T Consensus 264 ~-pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~ 298 (326)
T PF06723_consen 264 T-PPELAADILENGIVLTGGGALLRGLDEYISEETG 298 (326)
T ss_dssp S--HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS
T ss_pred C-CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC
Confidence 9 8999999887 69999999999999999999995
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.89 E-value=2.2e-22 Score=210.35 Aligned_cols=252 Identities=19% Similarity=0.210 Sum_probs=177.5
Q ss_pred ceEEccccccCCCC--CCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCC-CCCCCccceEEEccCCCCh
Q 008949 173 EFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIP-RSERNLYSAILVLPESFDN 249 (548)
Q Consensus 173 ~~~vG~eAl~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~-~~d~~~~~~VLvi~~~~~~ 249 (548)
-+++|++|.++... ..+.+.+||++|.+. +|+.++.+|+|+++ ++... ..+.+ .++++.+....
T Consensus 41 i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~---------d~~~~~~~l~~~~~-~~~~~~~~~~p---~~vitvP~~~~ 107 (336)
T PRK13928 41 VLAVGEEARRMVGRTPGNIVAIRPLRDGVIA---------DYDVTEKMLKYFIN-KACGKRFFSKP---RIMICIPTGIT 107 (336)
T ss_pred EEEecHHHHHhhhcCCCCEEEEccCCCCeEe---------cHHHHHHHHHHHHH-HHhccCCCCCC---eEEEEeCCCCC
Confidence 35899999887422 578889999999998 99999999999994 44332 23331 36665444333
Q ss_pred HHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHH
Q 008949 250 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 324 (548)
Q Consensus 250 ~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~ 324 (548)
...|++++.+|+.+|++.+.++.+++||+|++|. ..++|||+|+++|+|++|..|.++.. ..+++||+++|+.
T Consensus 108 ~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~did~~ 185 (336)
T PRK13928 108 SVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEA 185 (336)
T ss_pred HHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHH
Confidence 4445688889999999999999999999999997 56899999999999999998877654 3689999999999
Q ss_pred HHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcc
Q 008949 325 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKL 404 (548)
Q Consensus 325 L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i 404 (548)
|.+.+..+. .+ ..+...+|++|+++|.+....... . ..... ..+
T Consensus 186 i~~~l~~~~--------~~--~~~~~~ae~lK~~~~~~~~~~~~~--------------~--~~v~g-----~~~----- 229 (336)
T PRK13928 186 IIRYIRKKY--------KL--LIGERTAEEIKIKIGTAFPGAREE--------------E--MEIRG-----RDL----- 229 (336)
T ss_pred HHHHHHHHh--------ch--hcCHHHHHHHHHHhcccccccCCc--------------E--EEEec-----ccc-----
Confidence 998886432 12 133467999999998764311000 0 00000 000
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhcC
Q 008949 405 LVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTG 484 (548)
Q Consensus 405 ~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~ 484 (548)
... .+.+ +.++ |....|.+++. ...+.+.|.+++.+|
T Consensus 230 ~~~-----------------~~~~--~~i~-~~~~~eii~~~----------------------~~~i~~~i~~~l~~~- 266 (336)
T PRK13928 230 VTG-----------------LPKT--ITVT-SEEIREALKEP----------------------VSAIVQAVKSVLERT- 266 (336)
T ss_pred cCC-----------------CceE--EEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHhC-
Confidence 000 0000 0011 10111222211 236889999999999
Q ss_pred ChhHHHhhhc-CeEEecCCCCcCChHHHHHHHHhh
Q 008949 485 RIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLH 518 (548)
Q Consensus 485 ~~D~r~~L~~-nIvL~GG~S~ipGf~~RL~~eL~~ 518 (548)
+.+++.+++. +|+|+||+|++||+.++|++++..
T Consensus 267 ~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~ 301 (336)
T PRK13928 267 PPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV 301 (336)
T ss_pred CccccHhhcCCCEEEECcccchhhHHHHHHHHHCC
Confidence 6889989998 899999999999999999999963
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.71 E-value=1.1e-16 Score=160.74 Aligned_cols=256 Identities=21% Similarity=0.237 Sum_probs=176.3
Q ss_pred cceEEccccccCCCC--CCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEE-ccCCCC
Q 008949 172 REFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILV-LPESFD 248 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLv-i~~~~~ 248 (548)
.-+.+|+||..+-.+ .+....+|+++|.+. +++..+.+++|.+++..+-... +..- .+++ +|.-.+
T Consensus 45 ~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIA---------d~~~te~ml~~fik~~~~~~~~-~~~p-rI~i~vP~g~T 113 (342)
T COG1077 45 VVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFEVTELMLKYFIKKVHKNGSS-FPKP-RIVICVPSGIT 113 (342)
T ss_pred eEEEehHHHHHHhccCCCCceEEeecCCcEee---------cHHHHHHHHHHHHHHhccCCCC-CCCC-cEEEEecCCcc
Confidence 357899999987633 579999999999998 9999999999998543321211 1111 2443 455556
Q ss_pred hHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC----ce-EEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHH
Q 008949 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----ST-ACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 323 (548)
Q Consensus 249 ~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~----~t-glVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~ 323 (548)
..+.|.+-+ ..++-|...|+++.||++|++|+|+ .+ .+|||||.++|.|+-+..|-++. ..++.+||+.+++
T Consensus 114 ~VErrAi~e-a~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~--~~Sirv~GD~~De 190 (342)
T COG1077 114 DVERRAIKE-AAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVS--SSSVRVGGDKMDE 190 (342)
T ss_pred HHHHHHHHH-HHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEE--EeeEEEecchhhH
Confidence 666554444 4467899999999999999999997 45 69999999999999997555553 3458899999999
Q ss_pred HHHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCc
Q 008949 324 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 403 (548)
Q Consensus 324 ~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~ 403 (548)
.+...++++. ++ ......+|+||.+..++...+.+.. .....+..+.. + ..|+
T Consensus 191 ~Ii~yvr~~~--------nl--~IGe~taE~iK~eiG~a~~~~~~~~------------~~~eV~Grdl~--~---GlPk 243 (342)
T COG1077 191 AIIVYVRKKY--------NL--LIGERTAEKIKIEIGSAYPEEEDEE------------LEMEVRGRDLV--T---GLPK 243 (342)
T ss_pred HHHHHHHHHh--------Ce--eecHHHHHHHHHHhcccccccCCcc------------ceeeEEeeecc--c---CCCe
Confidence 9999998753 33 4667889999998877654211000 00000111100 0 0000
Q ss_pred ccCCCCCCCCCCCCCCCccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhc
Q 008949 404 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 483 (548)
Q Consensus 404 i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c 483 (548)
.+ .+. ...+.|.|- .....|.++|...+.+|
T Consensus 244 ~i--------------------------~i~-s~ev~eal~----------------------~~v~~Iveair~~Le~t 274 (342)
T COG1077 244 TI--------------------------TIN-SEEIAEALE----------------------EPLNGIVEAIRLVLEKT 274 (342)
T ss_pred eE--------------------------EEc-HHHHHHHHH----------------------HHHHHHHHHHHHHHhhC
Confidence 00 000 000011110 11247899999999999
Q ss_pred CChhHHHhhhcC-eEEecCCCCcCChHHHHHHHHhh
Q 008949 484 GRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLH 518 (548)
Q Consensus 484 ~~~D~r~~L~~n-IvL~GG~S~ipGf~~RL~~eL~~ 518 (548)
|+++-.+.+.+ |+++||+|++.||+++|.++..-
T Consensus 275 -pPeL~~DI~ergivltGGGalLrglD~~i~~et~~ 309 (342)
T COG1077 275 -PPELAADIVERGIVLTGGGALLRGLDRLLSEETGV 309 (342)
T ss_pred -CchhcccHhhCceEEecchHHhcCchHhHHhccCC
Confidence 78999999997 99999999999999999998763
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.42 E-value=6.6e-12 Score=125.26 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=105.5
Q ss_pred ecceecCEEeecCCCCccccHHHHHHHHHHHHh---hhcCCCCCCCCccceEEEccCCCChHHHHHHHHHHHHhcCCCee
Q 008949 192 HRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASA 268 (548)
Q Consensus 192 ~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~---~~L~i~~~d~~~~~~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v 268 (548)
..||++|.+. |++..+.+++++.+ ..++.+. .. +|+-+|..++..+.+.+. -+++..|+.-+
T Consensus 28 ~~~~~~g~I~---------d~~~~~~~l~~l~~~a~~~~g~~~-~~----vvisVP~~~~~~~r~a~~-~a~~~aGl~~~ 92 (239)
T TIGR02529 28 ADVVRDGIVV---------DFLGAVEIVRRLKDTLEQKLGIEL-TH----AATAIPPGTIEGDPKVIV-NVIESAGIEVL 92 (239)
T ss_pred cccccCCeEE---------EhHHHHHHHHHHHHHHHHHhCCCc-Cc----EEEEECCCCCcccHHHHH-HHHHHcCCceE
Confidence 4689999999 99999999999984 2444322 12 566678888766644344 45677899999
Q ss_pred eeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 008949 269 VVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMD 348 (548)
Q Consensus 269 ~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d 348 (548)
.++.+++|++.++|....+|||+|++.|.++-+.+|.++. ...+++||+++|+.+.+.+. .+
T Consensus 93 ~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~----------------i~ 154 (239)
T TIGR02529 93 HVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG----------------IS 154 (239)
T ss_pred EEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC----------------CC
Confidence 9999999999998887789999999999999999998775 35778999999998764331 34
Q ss_pred HHHHHHHHHHc
Q 008949 349 LLMLNRIKESY 359 (548)
Q Consensus 349 ~~l~e~iKe~~ 359 (548)
+..+|++|...
T Consensus 155 ~~~AE~~K~~~ 165 (239)
T TIGR02529 155 FEEAEEYKRGH 165 (239)
T ss_pred HHHHHHHHHhc
Confidence 57889998653
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.18 E-value=1.3e-09 Score=110.65 Aligned_cols=137 Identities=19% Similarity=0.214 Sum_probs=103.6
Q ss_pred ceEecceecCEEeecCCCCccccHHHHHHHHHHHHh---hhcCCCCCCCCccceEEEccCCCChHHHHHHHHHHHHhcCC
Q 008949 189 YCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRF 265 (548)
Q Consensus 189 ~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~---~~L~i~~~d~~~~~~VLvi~~~~~~~~~r~l~e~lfe~~~~ 265 (548)
.....++++|.+. |++.....++++++ +.++++.. . .++-+|+.++....+.+. -+.+..|+
T Consensus 52 ~~~~~~vr~G~i~---------di~~a~~~i~~~~~~ae~~~g~~i~-~----v~~~vp~~~~~~~~~~~~-~~~~~aGl 116 (267)
T PRK15080 52 LEWADVVRDGIVV---------DFIGAVTIVRRLKATLEEKLGRELT-H----AATAIPPGTSEGDPRAII-NVVESAGL 116 (267)
T ss_pred eccccccCCCEEe---------eHHHHHHHHHHHHHHHHHHhCCCcC-e----EEEEeCCCCCchhHHHHH-HHHHHcCC
Confidence 4457789999988 88888888888874 24455422 1 344467777554433344 66788999
Q ss_pred CeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccc
Q 008949 266 ASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK 345 (548)
Q Consensus 266 ~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~ 345 (548)
.-..++.++.+++.+.+...++|||+|+++|.++-+.+|.++.. ..+++||+++|+.+.+.+.
T Consensus 117 ~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~--------------- 179 (267)
T PRK15080 117 EVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG--------------- 179 (267)
T ss_pred ceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC---------------
Confidence 98989999999999888777899999999999998899987754 4679999999999875442
Q ss_pred cccHHHHHHHHHH
Q 008949 346 AMDLLMLNRIKES 358 (548)
Q Consensus 346 ~~d~~l~e~iKe~ 358 (548)
.++..+|++|..
T Consensus 180 -i~~~eAE~lK~~ 191 (267)
T PRK15080 180 -ISFEEAEQYKRD 191 (267)
T ss_pred -CCHHHHHHHHhc
Confidence 234678888854
No 26
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.83 E-value=1.7e-08 Score=108.90 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHH
Q 008949 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 323 (548)
Q Consensus 249 ~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~ 323 (548)
+..++.+.+ +++..|+.-..++.+|+|++++++. ...||||+|+++|+++-+.+|.++. ...+++||+++|+
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~--~~~i~~GG~~it~ 241 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRH--TKVIPYAGNVVTS 241 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEE--EeeeechHHHHHH
Confidence 344445655 6688999999999999999998864 2369999999999999999998773 4679999999999
Q ss_pred HHHHHHHhcCCCCCcccccccccccHHHHHHHHHHcee
Q 008949 324 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 361 (548)
Q Consensus 324 ~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~ 361 (548)
.+...|. .+...+|++|.++..
T Consensus 242 dIa~~l~----------------i~~~~AE~lK~~~g~ 263 (420)
T PRK09472 242 DIAYAFG----------------TPPSDAEAIKVRHGC 263 (420)
T ss_pred HHHHHhC----------------cCHHHHHHHHHhcce
Confidence 9875442 234789999987653
No 27
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.82 E-value=2.2e-08 Score=106.25 Aligned_cols=91 Identities=20% Similarity=0.308 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHH
Q 008949 254 EMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWT 328 (548)
Q Consensus 254 ~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~l 328 (548)
.+.+ +++..|+.-..+..+|+|++++++. ...+|||+|+++|+++.+.+|.... ...+++||+++|+.+.+.
T Consensus 162 ~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it~~i~~~ 238 (371)
T TIGR01174 162 NLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHITKDIAKA 238 (371)
T ss_pred HHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHHHHHHHH
Confidence 3444 5688999999999999999998753 2469999999999999999998764 467899999999988754
Q ss_pred HHhcCCCCCcccccccccccHHHHHHHHHHceecc
Q 008949 329 QRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIK 363 (548)
Q Consensus 329 L~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~ 363 (548)
+. ..+..+|++|.+++...
T Consensus 239 l~----------------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 239 LR----------------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred hC----------------CCHHHHHHHHHHeeEec
Confidence 31 23578999999998754
No 28
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.65 E-value=1.5e-06 Score=99.21 Aligned_cols=92 Identities=22% Similarity=0.288 Sum_probs=70.0
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEee--CCee-ecCC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~--dG~~-l~~s 310 (548)
.|+-+|..|+..+. +.+.-..+..|+.-+.++.+|.||++++|. ..-+|+|+|++++.|+.+. +|.. +..+
T Consensus 175 ~VITVPa~f~~~qR-~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~ 253 (673)
T PLN03184 175 AVITVPAYFNDSQR-TATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLST 253 (673)
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEe
Confidence 66668888987764 444456688899999999999999988875 3569999999999988774 3432 2223
Q ss_pred ceeecccHHHHHHHHHHHHHh
Q 008949 311 EKTLPFGGEDISRCLLWTQRH 331 (548)
Q Consensus 311 ~~~l~~GG~~it~~L~~lL~~ 331 (548)
.....+||+++++.|.+.+..
T Consensus 254 ~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 254 SGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred cCCCccCHHHHHHHHHHHHHH
Confidence 345789999999999876543
No 29
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.61 E-value=2.2e-07 Score=104.60 Aligned_cols=93 Identities=22% Similarity=0.265 Sum_probs=71.1
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEee--CCee-ecCC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~--dG~~-l~~s 310 (548)
+|+-+|..|+..+. +.+.-..+..|+.-+.++.+|.||++++|. .+-+|+|+|++++.|+.+. +|.. +..+
T Consensus 132 ~VItVPa~f~~~qR-~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~ 210 (599)
T TIGR01991 132 AVITVPAYFDDAQR-QATKDAARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLAT 210 (599)
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEE
Confidence 67778888987764 445555788999999999999999988764 3469999999999998874 4432 2222
Q ss_pred ceeecccHHHHHHHHHHHHHhc
Q 008949 311 EKTLPFGGEDISRCLLWTQRHH 332 (548)
Q Consensus 311 ~~~l~~GG~~it~~L~~lL~~~ 332 (548)
.....+||+++++.|.+.+..+
T Consensus 211 ~gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 211 GGDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 3346899999999999877543
No 30
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.60 E-value=1.2e-06 Score=99.37 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=71.2
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEee--CCee-ecCC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~--dG~~-l~~s 310 (548)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.+|.||++++|. ..-+|+|+|++++.|+-+. +|.. +..+
T Consensus 163 aVITVPayF~~~q-R~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at 241 (657)
T PTZ00186 163 AVVTCPAYFNDAQ-RQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKAT 241 (657)
T ss_pred EEEEECCCCChHH-HHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEe
Confidence 6777888888776 3455556678899999999999999988875 3569999999999998885 6653 3333
Q ss_pred ceeecccHHHHHHHHHHHHH
Q 008949 311 EKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 311 ~~~l~~GG~~it~~L~~lL~ 330 (548)
..-..+||+|+++.|.+.+.
T Consensus 242 ~Gd~~LGG~DfD~~l~~~~~ 261 (657)
T PTZ00186 242 NGDTHLGGEDFDLALSDYIL 261 (657)
T ss_pred cCCCCCCchhHHHHHHHHHH
Confidence 34578999999999887554
No 31
>CHL00094 dnaK heat shock protein 70
Probab=98.60 E-value=1.9e-06 Score=97.52 Aligned_cols=91 Identities=21% Similarity=0.263 Sum_probs=69.2
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEeeCC--ee-ecCC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDG--VA-LPNT 310 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~dG--~~-l~~s 310 (548)
.|+-+|..|+..+. +.+.-..+..|+.-+.++.+|.||++++|. ..-+|+|+|++++.|+-+.-| .. +..+
T Consensus 138 ~VItVPa~f~~~qR-~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~ 216 (621)
T CHL00094 138 AVITVPAYFNDSQR-QATKDAGKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLST 216 (621)
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEE
Confidence 67778989986654 444445578899999999999999998875 346999999999999888533 21 2223
Q ss_pred ceeecccHHHHHHHHHHHHH
Q 008949 311 EKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 311 ~~~l~~GG~~it~~L~~lL~ 330 (548)
.....+||+++++.|.+.+.
T Consensus 217 ~gd~~lGG~d~D~~l~~~~~ 236 (621)
T CHL00094 217 SGDTHLGGDDFDKKIVNWLI 236 (621)
T ss_pred ecCCCcChHHHHHHHHHHHH
Confidence 34578999999999986654
No 32
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.59 E-value=1.8e-06 Score=98.35 Aligned_cols=92 Identities=21% Similarity=0.290 Sum_probs=71.7
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEee--CCee-ecCC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVA-LPNT 310 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~-----tglVVDiG~~~T~V~pV~--dG~~-l~~s 310 (548)
+|+-+|..|+..+. +.+.-..+..|+.-+.++.+|.||++++|.. .-+|+|+|++++.|+-+. +|.. +..+
T Consensus 177 ~VITVPa~f~~~qR-~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~ 255 (663)
T PTZ00400 177 AVITVPAYFNDSQR-QATKDAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKAT 255 (663)
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEec
Confidence 66668888987764 4445566788999999999999999998863 569999999999998774 5643 2233
Q ss_pred ceeecccHHHHHHHHHHHHHh
Q 008949 311 EKTLPFGGEDISRCLLWTQRH 331 (548)
Q Consensus 311 ~~~l~~GG~~it~~L~~lL~~ 331 (548)
.....+||+++++.|.+.+..
T Consensus 256 ~gd~~LGG~d~D~~l~~~l~~ 276 (663)
T PTZ00400 256 NGNTSLGGEDFDQRILNYLIA 276 (663)
T ss_pred ccCCCcCHHHHHHHHHHHHHH
Confidence 445789999999999876643
No 33
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.55 E-value=1.9e-06 Score=97.80 Aligned_cols=91 Identities=21% Similarity=0.290 Sum_probs=69.2
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEee--CCee-ecCC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~--dG~~-l~~s 310 (548)
.|+-+|..|+..+.+ .+.-..+..|+.-+.++.+|.||++++|. .+-+|+|+|++++.|+.+. +|.. +..+
T Consensus 136 ~VItVPa~f~~~qR~-a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~ 214 (627)
T PRK00290 136 AVITVPAYFNDAQRQ-ATKDAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLST 214 (627)
T ss_pred EEEEECCCCCHHHHH-HHHHHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEe
Confidence 676788899877644 44455678899999999999999988774 4579999999999998774 3322 2233
Q ss_pred ceeecccHHHHHHHHHHHHH
Q 008949 311 EKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 311 ~~~l~~GG~~it~~L~~lL~ 330 (548)
.....+||.++++.|.+.+.
T Consensus 215 ~gd~~lGG~d~D~~l~~~~~ 234 (627)
T PRK00290 215 NGDTHLGGDDFDQRIIDYLA 234 (627)
T ss_pred cCCCCcChHHHHHHHHHHHH
Confidence 34568999999999987654
No 34
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.52 E-value=1e-06 Score=99.41 Aligned_cols=91 Identities=21% Similarity=0.291 Sum_probs=68.4
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC------ceEEEEEeCCCcEEEEEee--CCee-ecC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVE--DGVA-LPN 309 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~------~tglVVDiG~~~T~V~pV~--dG~~-l~~ 309 (548)
.|+-+|..|+..+.+.+ .-..+..|+.-+.++.+|.||++++|. .+-+|+|+|++++.|+.+. +|.. +..
T Consensus 133 ~VItVPa~f~~~qR~a~-~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~ 211 (595)
T TIGR02350 133 AVITVPAYFNDAQRQAT-KDAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLS 211 (595)
T ss_pred EEEEECCCCCHHHHHHH-HHHHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEE
Confidence 67778889987764434 445677899999999999999887764 3469999999999987774 4432 222
Q ss_pred CceeecccHHHHHHHHHHHHH
Q 008949 310 TEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 310 s~~~l~~GG~~it~~L~~lL~ 330 (548)
+.....+||.++++.|.+.+.
T Consensus 212 ~~gd~~lGG~d~D~~l~~~~~ 232 (595)
T TIGR02350 212 TAGDTHLGGDDFDQRIIDWLA 232 (595)
T ss_pred ecCCcccCchhHHHHHHHHHH
Confidence 334568999999999987654
No 35
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.50 E-value=1.7e-06 Score=97.15 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=71.2
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEee--CCee-ecCC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVA-LPNT 310 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~-----tglVVDiG~~~T~V~pV~--dG~~-l~~s 310 (548)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.+|.||++++|.. +-+|+|+|++++.|+-+. +|.. +..+
T Consensus 144 aVITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at 222 (595)
T PRK01433 144 AVITVPAHFNDAA-RGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIAT 222 (595)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEE
Confidence 6777888898766 44555567888999999999999999988752 359999999999988774 5532 2223
Q ss_pred ceeecccHHHHHHHHHHHHHhc
Q 008949 311 EKTLPFGGEDISRCLLWTQRHH 332 (548)
Q Consensus 311 ~~~l~~GG~~it~~L~~lL~~~ 332 (548)
.....+||+++++.|.+.+...
T Consensus 223 ~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 223 NGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred cCCcccChHHHHHHHHHHHHHh
Confidence 3345799999999999877543
No 36
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.48 E-value=3.7e-06 Score=95.75 Aligned_cols=91 Identities=21% Similarity=0.290 Sum_probs=68.7
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCc------eEEEEEeCCCcEEEEEee--CCee-ecC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVICVE--DGVA-LPN 309 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~------tglVVDiG~~~T~V~pV~--dG~~-l~~ 309 (548)
.|+-+|..|+..+.+ .+.-..+..|+.-+.++.+|.||++++|.. +-+|+|+|++++.|+-+. +|.. +..
T Consensus 136 ~VITVPa~f~~~qR~-a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~a 214 (653)
T PRK13411 136 AVITVPAYFTDAQRQ-ATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKA 214 (653)
T ss_pred EEEEECCCCCcHHHH-HHHHHHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEE
Confidence 676688889877644 344466788999999999999999888752 369999999999998764 3432 222
Q ss_pred CceeecccHHHHHHHHHHHHH
Q 008949 310 TEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 310 s~~~l~~GG~~it~~L~~lL~ 330 (548)
+.....+||+++++.|.+.+.
T Consensus 215 t~gd~~LGG~dfD~~l~~~l~ 235 (653)
T PRK13411 215 TAGNNHLGGDDFDNCIVDWLV 235 (653)
T ss_pred EecCCCcCHHHHHHHHHHHHH
Confidence 333468999999999986654
No 37
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.47 E-value=1.2e-06 Score=98.90 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=71.0
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEee--CCee-ecCC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~--dG~~-l~~s 310 (548)
.|+-+|..|+..+. +.+.-..+..|+.-+.++.+|.||++++|. ..-+|+|+|++++.|+.+. +|.. +..+
T Consensus 152 ~VITVPa~f~~~qR-~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat 230 (616)
T PRK05183 152 AVITVPAYFDDAQR-QATKDAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLAT 230 (616)
T ss_pred EEEEECCCCCHHHH-HHHHHHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEe
Confidence 67778888987764 444556788999999999999999987765 2469999999999998775 4432 2223
Q ss_pred ceeecccHHHHHHHHHHHHHhc
Q 008949 311 EKTLPFGGEDISRCLLWTQRHH 332 (548)
Q Consensus 311 ~~~l~~GG~~it~~L~~lL~~~ 332 (548)
.....+||.++++.|.+.+..+
T Consensus 231 ~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 231 GGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred cCCCCcCHHHHHHHHHHHHHHH
Confidence 3456899999999999776543
No 38
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.45 E-value=1.9e-06 Score=98.07 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=69.8
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-------ceEEEEEeCCCcEEEEEee--CCee-ec
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGVA-LP 308 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-------~tglVVDiG~~~T~V~pV~--dG~~-l~ 308 (548)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.||++++|. .+-+|+|+|++++.|+-+. +|.. +.
T Consensus 143 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~ 221 (653)
T PTZ00009 143 AVVTVPAYFNDSQ-RQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVK 221 (653)
T ss_pred eEEEeCCCCCHHH-HHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 6766888888766 4455556788899999999999999988764 3579999999999998774 5542 22
Q ss_pred CCceeecccHHHHHHHHHHHHH
Q 008949 309 NTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 309 ~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.+.....+||+++++.|.+.+.
T Consensus 222 a~~gd~~lGG~d~D~~l~~~~~ 243 (653)
T PTZ00009 222 ATAGDTHLGGEDFDNRLVEFCV 243 (653)
T ss_pred EecCCCCCChHHHHHHHHHHHH
Confidence 2233468999999999987654
No 39
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.44 E-value=4.7e-06 Score=94.93 Aligned_cols=91 Identities=22% Similarity=0.300 Sum_probs=69.4
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEee--CCee-ecCC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 310 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~--dG~~-l~~s 310 (548)
+|+-+|..|+..+.+ .+.-..+..|+.-+.++.+|.||++++|. .+-+|+|+|++++.|+.+. +|.. +..+
T Consensus 138 ~VITVPa~f~~~qR~-a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at 216 (668)
T PRK13410 138 AVITVPAYFNDSQRQ-ATRDAGRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKAT 216 (668)
T ss_pred EEEEECCCCCHHHHH-HHHHHHHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEe
Confidence 677788889877644 44445578899999999999999998875 3479999999999998775 4532 2223
Q ss_pred ceeecccHHHHHHHHHHHHH
Q 008949 311 EKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 311 ~~~l~~GG~~it~~L~~lL~ 330 (548)
.....+||.++++.|.+.+.
T Consensus 217 ~gd~~lGG~dfD~~l~~~l~ 236 (668)
T PRK13410 217 SGDTQLGGNDFDKRIVDWLA 236 (668)
T ss_pred ecCCCCChhHHHHHHHHHHH
Confidence 33467999999999986654
No 40
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.42 E-value=7.6e-07 Score=95.03 Aligned_cols=88 Identities=16% Similarity=0.239 Sum_probs=72.2
Q ss_pred HHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHH
Q 008949 256 LSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 256 ~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
+.-++|+.|..=..++-+++|++.++=. -.+|+||+|+++|+|+...+|.+... ..+++||+++|.-+.+.|.
T Consensus 170 l~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~~vT~DIa~~l~ 247 (418)
T COG0849 170 LEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT--GVIPVGGDHVTKDIAKGLK 247 (418)
T ss_pred HHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE--eeEeeCccHHHHHHHHHhC
Confidence 4446688888888889999999887743 45799999999999999999998864 5799999999999987653
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHHcee
Q 008949 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCE 361 (548)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~ 361 (548)
.++..+|+||.++..
T Consensus 248 ----------------t~~~~AE~iK~~~g~ 262 (418)
T COG0849 248 ----------------TPFEEAERIKIKYGS 262 (418)
T ss_pred ----------------CCHHHHHHHHHHcCc
Confidence 234789999988753
No 41
>PRK11678 putative chaperone; Provisional
Probab=98.38 E-value=8.4e-06 Score=88.68 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=64.4
Q ss_pred eEEEccCCCC-----hHHH--HHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEee-CC-
Q 008949 239 AILVLPESFD-----NREI--KEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE-DG- 304 (548)
Q Consensus 239 ~VLvi~~~~~-----~~~~--r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~-dG- 304 (548)
+|+-+|..|+ ..+. ++++.-..+..|++.+.+++||.||++++|. ..-+|+|+|++++.++-|. ++
T Consensus 152 ~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~ 231 (450)
T PRK11678 152 AVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPS 231 (450)
T ss_pred EEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCc
Confidence 6666788886 3332 2345666788999999999999999998874 3579999999999998874 21
Q ss_pred ---------eeecCCceeecccHHHHHHHHH
Q 008949 305 ---------VALPNTEKTLPFGGEDISRCLL 326 (548)
Q Consensus 305 ---------~~l~~s~~~l~~GG~~it~~L~ 326 (548)
-++.++. ..+||+|+++.|.
T Consensus 232 ~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 232 WRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred ccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 2333332 3699999999986
No 42
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.05 E-value=5.4e-05 Score=79.53 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhc----------C-Cc-eEEEEEeCCCcEEEEEeeCCeeecCCceeecc
Q 008949 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGN----------G-LS-TACVVNMGAQVTSVICVEDGVALPNTEKTLPF 316 (548)
Q Consensus 249 ~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~----------G-~~-tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~ 316 (548)
+..++.+.++ |+..|+.-..+..+++|.+-+. . .. +.++||+|+..|+++-+.+|.++. .+.+++
T Consensus 142 ~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~ 218 (348)
T TIGR01175 142 KEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF--TREVPF 218 (348)
T ss_pred HHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE--EEEeec
Confidence 4444455554 6888888777777777764322 1 12 389999999999999999999885 478999
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHH
Q 008949 317 GGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 358 (548)
Q Consensus 317 GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~ 358 (548)
||+++|+.+.+.+. .++..++++|.+
T Consensus 219 G~~~i~~~i~~~~~----------------~~~~~Ae~~k~~ 244 (348)
T TIGR01175 219 GTRQLTSELSRAYG----------------LNPEEAGEAKQQ 244 (348)
T ss_pred hHHHHHHHHHHHcC----------------CCHHHHHHHHhc
Confidence 99999998875431 245778888864
No 43
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.1e-05 Score=85.07 Aligned_cols=109 Identities=22% Similarity=0.266 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEE
Q 008949 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVV 289 (548)
Q Consensus 215 le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVV 289 (548)
+.++++++ +..|+-...+ .|+-+|..|+..+ |..+.-..+..|+.-+.+++||.||+|++|. .+-+|+
T Consensus 105 L~~lk~~a-e~~lg~~v~~-----~VItVPayF~d~q-R~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~ 177 (579)
T COG0443 105 LTKLKEDA-EAYLGEKVTD-----AVITVPAYFNDAQ-RQATKDAARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVY 177 (579)
T ss_pred HHHHHHHH-HHhhCCCcce-----EEEEeCCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEE
Confidence 45555555 3455533322 5666788888777 5577777889999999999999999999986 356999
Q ss_pred EeCCCcEEEEEee--CCe-eecCCceeecccHHHHHHHHHHHHH
Q 008949 290 NMGAQVTSVICVE--DGV-ALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 290 DiG~~~T~V~pV~--dG~-~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
|+|.+++.|+-|. +|. -+..+.....+||+|++..|...+.
T Consensus 178 DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~ 221 (579)
T COG0443 178 DLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLV 221 (579)
T ss_pred EcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHH
Confidence 9999999999885 453 3445567889999999999986543
No 44
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.65 E-value=0.00028 Score=74.09 Aligned_cols=86 Identities=22% Similarity=0.422 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCCeeeeehhhHH--HHhhcC---------CceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHH
Q 008949 254 EMLSIVLRDLRFASAVVHQEGLA--AVFGNG---------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDIS 322 (548)
Q Consensus 254 ~l~e~lfe~~~~~~v~~~~e~ll--a~y~~G---------~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it 322 (548)
..++ +|+..|+.-..+--++.| -+|... ..+-++||+|+..|+++-+.+|.++- .+.+++||+++|
T Consensus 140 ~~~~-~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~~l~ 216 (340)
T PF11104_consen 140 SYVE-LFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGNDLT 216 (340)
T ss_dssp HHHH-HHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHH
T ss_pred HHHH-HHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHHHHH
Confidence 3444 568888876655544444 233331 13459999999999999999999885 467899999999
Q ss_pred HHHHHHHHhcCCCCCcccccccccccHHHHHHHHHH
Q 008949 323 RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 358 (548)
Q Consensus 323 ~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~ 358 (548)
+.+.+.+. .++..++++|.+
T Consensus 217 ~~i~~~~~----------------i~~~~Ae~~k~~ 236 (340)
T PF11104_consen 217 EAIARELG----------------IDFEEAEELKRS 236 (340)
T ss_dssp HHHHHHTT------------------HHHHHHHHHH
T ss_pred HHHHHhcC----------------CCHHHHHHHHhc
Confidence 99985431 345667787754
No 45
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=97.39 E-value=0.00073 Score=76.18 Aligned_cols=92 Identities=23% Similarity=0.288 Sum_probs=67.4
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC------ceEEEEEeCCCcEEEEEee--CCee-ecC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVE--DGVA-LPN 309 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~------~tglVVDiG~~~T~V~pV~--dG~~-l~~ 309 (548)
.|+-+|..|+..+ |+.+.-+.+..|+..+.++.++.||+++++. .+-+|+|+|++++.|+.|. +|.. +..
T Consensus 138 ~vitVPa~~~~~q-r~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~ 216 (602)
T PF00012_consen 138 VVITVPAYFTDEQ-RQALRDAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLA 216 (602)
T ss_dssp EEEEE-TT--HHH-HHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEE
T ss_pred ceeeechhhhhhh-hhcccccccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccc
Confidence 5666899998877 4455556678899999999999999877764 3569999999999988874 5643 222
Q ss_pred CceeecccHHHHHHHHHHHHHh
Q 008949 310 TEKTLPFGGEDISRCLLWTQRH 331 (548)
Q Consensus 310 s~~~l~~GG~~it~~L~~lL~~ 331 (548)
+.....+||+++++.|.+.+..
T Consensus 217 ~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 217 TAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp EEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccccceecceeeccccc
Confidence 3345789999999999977653
No 46
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.38 E-value=0.0012 Score=69.71 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=58.9
Q ss_pred cCCCeeeeehhhHHHHhhcCC-------------ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHH
Q 008949 263 LRFASAVVHQEGLAAVFGNGL-------------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 329 (548)
Q Consensus 263 ~~~~~v~~~~e~lla~y~~G~-------------~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL 329 (548)
..+..|.+++|+++|+|.... ...+|||||+.+|.++-+.+|.+.......++.|..++-+.+.+.+
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHH
Confidence 456789999999999876533 2359999999999999999999988888889999999999999888
Q ss_pred Hh
Q 008949 330 RH 331 (548)
Q Consensus 330 ~~ 331 (548)
+.
T Consensus 231 ~~ 232 (344)
T PRK13917 231 SK 232 (344)
T ss_pred Hh
Confidence 53
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=97.13 E-value=0.0024 Score=66.50 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCC--hHHHHHHHHHHHHh--------cCCCeeeeehhhHHHHhhc-
Q 008949 213 EDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFD--NREIKEMLSIVLRD--------LRFASAVVHQEGLAAVFGN- 281 (548)
Q Consensus 213 ~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~--~~~~r~l~e~lfe~--------~~~~~v~~~~e~lla~y~~- 281 (548)
++...++.+++. ..+.+ +. ..|++-=|.+ ..+.+++.+.+... +.+..|.+.+|++.|.|..
T Consensus 84 ~~~~~L~~~Al~-~~~~~--~~----~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~ 156 (320)
T TIGR03739 84 PEYMALLRGALA-LSKVR--EI----DQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFV 156 (320)
T ss_pred HHHHHHHHHHHH-HhcCC--CC----CEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHH
Confidence 456778888874 33322 11 2344433332 22222355554432 5778899999999997754
Q ss_pred --------CCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHHhc
Q 008949 282 --------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHH 332 (548)
Q Consensus 282 --------G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~~~ 332 (548)
.....+|||||+.+|.++.+.++.+.......++.|-.++.+.+.+.++..
T Consensus 157 ~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 157 AQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred hcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 224569999999999998888888888777889999999999999888654
No 48
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.079 Score=59.63 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=66.3
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC----------ceEEEEEeCCCcEEEEEee------
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----------STACVVNMGAQVTSVICVE------ 302 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~----------~tglVVDiG~~~T~V~pV~------ 302 (548)
.|+-+|+.|+..+.+.+++. -+-.|..-+.++++..+++..+|. +.-+|-|+|+++|+.+-|.
T Consensus 161 ~ViTVP~~F~qaeR~all~A-a~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~ 239 (902)
T KOG0104|consen 161 MVITVPPFFNQAERRALLQA-AQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKT 239 (902)
T ss_pred eEEeCCcccCHHHHHHHHHH-HHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeecc
Confidence 57778888998876655543 245678889999999999987775 3459999999999999885
Q ss_pred --CCeeec-----CCceeecccHHHHHHHHHHHHHh
Q 008949 303 --DGVALP-----NTEKTLPFGGEDISRCLLWTQRH 331 (548)
Q Consensus 303 --dG~~l~-----~s~~~l~~GG~~it~~L~~lL~~ 331 (548)
.|..++ .......+||..+|..|...|..
T Consensus 240 k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 240 KEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 220001 11223568999999999887753
No 49
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.24 E-value=0.043 Score=56.46 Aligned_cols=79 Identities=18% Similarity=0.334 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHhcCCCeeeeehhhHHH--Hhh-----cCC-ce---EEEEEeCCCcEEEEEeeCCeeecCCceeeccc
Q 008949 249 NREIKEMLSIVLRDLRFASAVVHQEGLAA--VFG-----NGL-ST---ACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 317 (548)
Q Consensus 249 ~~~~r~l~e~lfe~~~~~~v~~~~e~lla--~y~-----~G~-~t---glVVDiG~~~T~V~pV~dG~~l~~s~~~l~~G 317 (548)
++++-+.-.-.|+.-|+.-..+=-++.+. +|. .|. .. ..|+|||+..|.++-+.+|.++.. +..++|
T Consensus 147 rkE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~--r~~~~g 224 (354)
T COG4972 147 RKEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYT--REVPVG 224 (354)
T ss_pred ehhhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeE--eeccCc
Confidence 33333333446777788766666666554 333 122 22 359999999999999999999864 789999
Q ss_pred HHHHHHHHHHHH
Q 008949 318 GEDISRCLLWTQ 329 (548)
Q Consensus 318 G~~it~~L~~lL 329 (548)
|+++|+.+.+..
T Consensus 225 ~~Qlt~~i~r~~ 236 (354)
T COG4972 225 TDQLTQEIQRAY 236 (354)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 50
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.069 Score=59.70 Aligned_cols=89 Identities=19% Similarity=0.288 Sum_probs=67.2
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCc-------eEEEEEeCCCcEEEEEee--CCe-eec
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-------TACVVNMGAQVTSVICVE--DGV-ALP 308 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~-------tglVVDiG~~~T~V~pV~--dG~-~l~ 308 (548)
.|+-+|..|+..+. ..+.-.-...|+.-+-++.+|-||+.++|+. +-||.|.|++...|+.+. +|. .+.
T Consensus 146 aviTVPa~F~~~Qr-~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vk 224 (620)
T KOG0101|consen 146 AVVTVPAYFNDSQR-AATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVK 224 (620)
T ss_pred EEEEecCCcCHHHH-HHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhh
Confidence 67777888887663 3455555667889999999999998888743 449999999999998885 553 233
Q ss_pred CCceeecccHHHHHHHHHHH
Q 008949 309 NTEKTLPFGGEDISRCLLWT 328 (548)
Q Consensus 309 ~s~~~l~~GG~~it~~L~~l 328 (548)
....-.++||.++++.|...
T Consensus 225 at~gd~~lGGedf~~~l~~h 244 (620)
T KOG0101|consen 225 ATAGDTHLGGEDFDNKLVNH 244 (620)
T ss_pred hhcccccccchhhhHHHHHH
Confidence 34456799999998887754
No 51
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.036 Score=58.16 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=60.6
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC------ceEEEEEeCCCcEEEE--EeeCCee-ecC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVI--CVEDGVA-LPN 309 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~------~tglVVDiG~~~T~V~--pV~dG~~-l~~ 309 (548)
+|+-+|..||..+.+ .+.-.=--.|..-+-++++|.+|+.++|+ .+-+|.|.|.++-.|+ .|.+|.- +..
T Consensus 175 AVvTvPAYFNDAQrQ-ATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVla 253 (663)
T KOG0100|consen 175 AVVTVPAYFNDAQRQ-ATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLA 253 (663)
T ss_pred eEEecchhcchHHHh-hhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEe
Confidence 788888888866543 22211112466668899999999988886 4679999999987665 4567762 223
Q ss_pred CceeecccHHHHHHHHHH
Q 008949 310 TEKTLPFGGEDISRCLLW 327 (548)
Q Consensus 310 s~~~l~~GG~~it~~L~~ 327 (548)
+..--.+||.|+++..++
T Consensus 254 TnGDThLGGEDFD~rvm~ 271 (663)
T KOG0100|consen 254 TNGDTHLGGEDFDQRVME 271 (663)
T ss_pred cCCCcccCccchHHHHHH
Confidence 345568999988876553
No 52
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=95.66 E-value=0.023 Score=61.44 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHHHHHHHHH---HHHhcCCCeeeeehhhHHHHhhcCC----
Q 008949 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSI---VLRDLRFASAVVHQEGLAAVFGNGL---- 283 (548)
Q Consensus 211 ~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~~r~l~e~---lfe~~~~~~v~~~~e~lla~y~~G~---- 283 (548)
|-+.++.|++.-| ++-++.+++-. -..++|+-..-..+..++.++- ...+|=+....+--+++++.+|+|.
T Consensus 64 D~~~i~~~V~~ey-~~Agi~~~die-~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLs 141 (475)
T PRK10719 64 DEAAIKELIEEEY-QKAGIAPESID-SGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 141 (475)
T ss_pred cHHHHHHHHHHHH-HHcCCCHHHcc-ccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhh
Confidence 6888999999888 57888886532 1255666544433333343332 1112222222333445555555553
Q ss_pred ----ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHH
Q 008949 284 ----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 324 (548)
Q Consensus 284 ----~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~ 324 (548)
...++||||+++|+++-..+|.++. ...+++||+++|.-
T Consensus 142 eEke~gVa~IDIGgGTT~iaVf~~G~l~~--T~~l~vGG~~IT~D 184 (475)
T PRK10719 142 EERNTRVLNIDIGGGTANYALFDAGKVID--TACLNVGGRLIETD 184 (475)
T ss_pred hhccCceEEEEeCCCceEEEEEECCEEEE--EEEEecccceEEEC
Confidence 3469999999999999999999885 36799999988863
No 53
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=94.48 E-value=0.032 Score=53.55 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=66.1
Q ss_pred HHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHHhcCCCCCc
Q 008949 259 VLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQI 338 (548)
Q Consensus 259 lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~ 338 (548)
++|..|....+++++|.|+++-.++..|.|||+|.++|-|+-+.+|.++..+ --+.||.++|-.|. ++
T Consensus 115 ViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLvlA------G~---- 182 (277)
T COG4820 115 VIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLVLA------GN---- 182 (277)
T ss_pred eecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEEEe------cc----
Confidence 3578899999999999999999999999999999999999999999998754 35788988874432 21
Q ss_pred ccccccccccHHHHHHHHH
Q 008949 339 RTDILTKAMDLLMLNRIKE 357 (548)
Q Consensus 339 ~~~~l~~~~d~~l~e~iKe 357 (548)
...+.+.+|++|.
T Consensus 183 ------ygi~~EeAE~~Kr 195 (277)
T COG4820 183 ------YGISLEEAEQYKR 195 (277)
T ss_pred ------cCcCHhHHHHhhh
Confidence 1355678888873
No 54
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=92.70 E-value=0.87 Score=45.60 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhh----cCCceE
Q 008949 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFG----NGLSTA 286 (548)
Q Consensus 211 ~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~----~G~~tg 286 (548)
.|+.+.+.+..++ +++++++.+. ..|.++ .+.... + .|- + .++.|-.+.+.| ... ..
T Consensus 33 ~~~~~~~~l~~~~-~~~~~~~~~i---~~i~~T--g~~~~~----v--~~~--~----~~~~ei~~~~~g~~~~~~~-~~ 93 (248)
T TIGR00241 33 VIEETARAILEAL-KEAGIGLEPI---DKIVAT--GYGRHK----V--GFA--D----KIVTEISCHGKGANYLAPE-AR 93 (248)
T ss_pred CHHHHHHHHHHHH-HHcCCChhhe---eEEEEE--CCCccc----c--ccc--C----CceEEhhHHHHHHHHHCCC-CC
Confidence 7888888888887 5666655443 134343 222111 1 111 1 234455554333 332 34
Q ss_pred EEEEeCCCcEEEEEeeCCeeecC-CceeecccHHHHHHHHHHHH
Q 008949 287 CVVNMGAQVTSVICVEDGVALPN-TEKTLPFGGEDISRCLLWTQ 329 (548)
Q Consensus 287 lVVDiG~~~T~V~pV~dG~~l~~-s~~~l~~GG~~it~~L~~lL 329 (548)
.|||||++.|.+.-+.+|.+..- -...+..|+..+++.+...|
T Consensus 94 ~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 94 GVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred EEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 69999999999999999987621 12346778888888776554
No 55
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=92.38 E-value=0.5 Score=51.34 Aligned_cols=119 Identities=19% Similarity=0.200 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHHHHHHHHHHHHhcCC---CeeeeehhhHHHHhhcCC----
Q 008949 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRF---ASAVVHQEGLAAVFGNGL---- 283 (548)
Q Consensus 211 ~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~~r~l~e~lfe~~~~---~~v~~~~e~lla~y~~G~---- 283 (548)
|-+.++.|++.-| ++-++.|++-. -.+|+||-..-.+..-+++++.|-+..|= ...-=--|+++|..|+|.
T Consensus 61 D~~al~~iv~~eY-~~Agi~p~~I~-TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S 138 (473)
T PF06277_consen 61 DAEALKEIVEEEY-RKAGITPEDID-TGAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALS 138 (473)
T ss_pred CHHHHHHHHHHHH-HHcCCCHHHCc-cccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHh
Confidence 7899999999988 67899887632 34888987776666556677777655442 222223578999999984
Q ss_pred ----ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHH-----------HHHHHHHHHhcC
Q 008949 284 ----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDI-----------SRCLLWTQRHHQ 333 (548)
Q Consensus 284 ----~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~i-----------t~~L~~lL~~~~ 333 (548)
.+-+=+|||.++|.++-..+|.++.. .-+++||+.| ..-+..+++..+
T Consensus 139 ~~~~~~V~NiDIGGGTtN~avf~~G~v~~T--~cl~IGGRLi~~d~~g~i~yis~~~~~l~~~~~ 201 (473)
T PF06277_consen 139 KEHHTVVANIDIGGGTTNIAVFDNGEVIDT--ACLDIGGRLIEFDPDGRITYISPPIQRLLEELG 201 (473)
T ss_pred hhhCCeEEEEEeCCCceeEEEEECCEEEEE--EEEeeccEEEEEcCCCcEEEECHHHHHHHHHhC
Confidence 23456899999999999999999965 4589999743 334556665543
No 56
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=91.00 E-value=0.27 Score=51.27 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=51.2
Q ss_pred cCCCeeeeehhhHHHHhhcC-----CceEEEEEeCCCcEEEEEeeCCeee-cCCceeecccHHHHHHHHHHHHHh
Q 008949 263 LRFASAVVHQEGLAAVFGNG-----LSTACVVNMGAQVTSVICVEDGVAL-PNTEKTLPFGGEDISRCLLWTQRH 331 (548)
Q Consensus 263 ~~~~~v~~~~e~lla~y~~G-----~~tglVVDiG~~~T~V~pV~dG~~l-~~s~~~l~~GG~~it~~L~~lL~~ 331 (548)
+.+..|.+.+|+++|.|..- ..+.+|||||+.+|.++-|.++... ..+....+.|-..+.+.+.+.|..
T Consensus 138 i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 138 ITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp -EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred EEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 44779999999999988752 3568999999999999988876543 333445688999999999988765
No 57
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.87 E-value=2.3 Score=47.95 Aligned_cols=116 Identities=18% Similarity=0.274 Sum_probs=80.4
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-------
Q 008949 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------- 283 (548)
Q Consensus 211 ~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~------- 283 (548)
.+..+-.-+..+-++.|.-+-.| |++-+|..|+..+.|.+++.. ...|+..+-++.+--|++.++|.
T Consensus 117 v~Am~l~klk~~ae~~l~~~v~D-----cvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~ 190 (727)
T KOG0103|consen 117 VLAMLLTKLKATAEKNLKSPVSD-----CVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPE 190 (727)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCC-----eeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCC
Confidence 44444333444444555422222 677788889988877666643 57899999999999999988885
Q ss_pred -----ceEEEEEeCCCcEEEEEee--CCe-eecCCceeecccHHHHHHHHHHHHHhc
Q 008949 284 -----STACVVNMGAQVTSVICVE--DGV-ALPNTEKTLPFGGEDISRCLLWTQRHH 332 (548)
Q Consensus 284 -----~tglVVDiG~~~T~V~pV~--dG~-~l~~s~~~l~~GG~~it~~L~~lL~~~ 332 (548)
.+-+.||+|++.++++-+. -|. -+..+..--.+||+++++.|.+.....
T Consensus 191 ~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 191 NEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred cccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHH
Confidence 2368899999999987763 343 233344455899999999998776543
No 58
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=86.53 E-value=2.3 Score=43.22 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC----ce-EEEEEeCCCcEEEEEee-CCeeecCCceeecccHHHHHHH
Q 008949 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----ST-ACVVNMGAQVTSVICVE-DGVALPNTEKTLPFGGEDISRC 324 (548)
Q Consensus 251 ~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~----~t-glVVDiG~~~T~V~pV~-dG~~l~~s~~~l~~GG~~it~~ 324 (548)
..+.+++.|-+.+|++--.-.-|+-+|..|+=. .. -.|+|+|+++|..+-+- +|.+. .+.+-=+|+-+|-.
T Consensus 96 ~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~---~iHlAGAG~mVTml 172 (332)
T PF08841_consen 96 QMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT---AIHLAGAGNMVTML 172 (332)
T ss_dssp TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE---EEEEE-SHHHHHHH
T ss_pred cHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE---EEEecCCchhhHHH
Confidence 344678888899999988899999999998843 33 37899999999998885 55554 24556667888866
Q ss_pred HHHHHHhcCCCCCcccccccccccHHHHHHHHH
Q 008949 325 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKE 357 (548)
Q Consensus 325 L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe 357 (548)
+..-| + | .|+.++|+||.
T Consensus 173 I~sEL---G---------l---~d~~lAE~IKk 190 (332)
T PF08841_consen 173 INSEL---G---------L---EDRELAEDIKK 190 (332)
T ss_dssp HHHHC---T-------------S-HHHHHHHHH
T ss_pred HHHhh---C---------C---CCHHHHHHhhh
Confidence 65432 2 2 46799999996
No 59
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=85.94 E-value=3.5 Score=36.43 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=40.3
Q ss_pred EEEEeCCCcEEEEEeeCCeeecCCceeeccc--------HHHHH--HHHHHHHHhcCCCCCcccccccccccHHHHHHH-
Q 008949 287 CVVNMGAQVTSVICVEDGVALPNTEKTLPFG--------GEDIS--RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRI- 355 (548)
Q Consensus 287 lVVDiG~~~T~V~pV~dG~~l~~s~~~l~~G--------G~~it--~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~i- 355 (548)
++||+|+++|.++-..+|.... ...+++| |.+|| +.+.+-++.. ...+|++
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a----------------~~~AE~~~ 63 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKIA----------------IEEAERLA 63 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT------------------HHHHHHH-
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHHH----------------HHHHHHHh
Confidence 6899999999999888877664 5779999 99999 8787666431 2557777
Q ss_pred HHHceecc
Q 008949 356 KESYCEIK 363 (548)
Q Consensus 356 Ke~~c~v~ 363 (548)
|.++..+.
T Consensus 64 k~~i~~v~ 71 (120)
T PF14450_consen 64 KCEIGSVY 71 (120)
T ss_dssp HHHH--S-
T ss_pred CCeeeEEE
Confidence 77665443
No 60
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=85.33 E-value=1.8 Score=44.09 Aligned_cols=70 Identities=16% Similarity=0.273 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCeeeeehh---hHHHH----hhc-CCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHH
Q 008949 254 EMLSIVLRDLRFASAVVHQE---GLAAV----FGN-GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (548)
Q Consensus 254 ~l~e~lfe~~~~~~v~~~~e---~lla~----y~~-G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L 325 (548)
++++.+.+..|++ +-++.. +.++. .+. ....++|||+|.++|.++.+.+|.+.. ..++++|.-.+++.+
T Consensus 75 ~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 75 EFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVF--SQSLPLGAVRLTERF 151 (285)
T ss_dssp HHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEE--EEEES--HHHHHHHH
T ss_pred HHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeE--eeeeehHHHHHHHHH
Confidence 4677777777775 444432 22222 222 457899999999999999999999885 478999999988877
Q ss_pred H
Q 008949 326 L 326 (548)
Q Consensus 326 ~ 326 (548)
.
T Consensus 152 ~ 152 (285)
T PF02541_consen 152 F 152 (285)
T ss_dssp S
T ss_pred h
Confidence 4
No 61
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=81.45 E-value=2 Score=44.26 Aligned_cols=32 Identities=34% Similarity=0.434 Sum_probs=23.3
Q ss_pred HHh-hcCCceEEEEEeCCCcEEEEEeeCCeeec
Q 008949 277 AVF-GNGLSTACVVNMGAQVTSVICVEDGVALP 308 (548)
Q Consensus 277 a~y-~~G~~tglVVDiG~~~T~V~pV~dG~~l~ 308 (548)
+++ ..|..++++||||..+|.|++|.||.+..
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 345 55788999999999999999999999864
No 62
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=80.10 E-value=13 Score=38.90 Aligned_cols=91 Identities=21% Similarity=0.295 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCccceEEEccC---CCChH-H-HHHHHHHHHHhcCCCeeeeehhh------------
Q 008949 212 LEDLYAIWDWILTEKLHIPRSERNLYSAILVLPE---SFDNR-E-IKEMLSIVLRDLRFASAVVHQEG------------ 274 (548)
Q Consensus 212 ~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~---~~~~~-~-~r~l~e~lfe~~~~~~v~~~~e~------------ 274 (548)
.+.|...+..+++ .+... ..+ .|.+|-. .|..+ + ++.+++.+-+.|+-+ +++.+..
T Consensus 35 ~~~L~~~l~~~~~-~~~~~-~~~----avtMTgELaD~f~~r~~GV~~i~~~~~~~~~~~-~~i~~s~GG~~s~~~a~~~ 107 (318)
T TIGR03123 35 NDKLAETLKEISQ-DLSSA-DNV----AVTMTGELADCFEDKAEGVEFILAAVESAFGSP-VSVFASDGGFVSAEEALTN 107 (318)
T ss_pred chHHHHHHHHHHH-hcCcc-ceE----EEEeehhhhhhhcCHHHHHHHHHHHHHHhcCCC-eEEEecCCCCccHHHHHHh
Confidence 3456666666663 44321 223 7777754 45433 2 445777777777553 3332211
Q ss_pred ---------HH--HHhhcCCceEEEEEeCCCcEEEEEeeCCeeecC
Q 008949 275 ---------LA--AVFGNGLSTACVVNMGAQVTSVICVEDGVALPN 309 (548)
Q Consensus 275 ---------ll--a~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~ 309 (548)
++ +.++.....++++|+|..+|.|++|.+|.+...
T Consensus 108 pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 108 PLDVAAANWLATAQLIAKRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred HHHHHHhhHHHHHHHHHhcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 11 122334578999999999999999999998754
No 63
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=78.82 E-value=17 Score=40.33 Aligned_cols=91 Identities=23% Similarity=0.323 Sum_probs=67.0
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEe--eCCeee-cCC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICV--EDGVAL-PNT 310 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~-----tglVVDiG~~~T~V~pV--~dG~~l-~~s 310 (548)
.|+-+|..|+..+ |..+.-+..-.|..-+-++++|-+|+.++|+. .-.|-|+|.+...|+-. ++|.-. ..+
T Consensus 163 avvtvpAyfndsq-RqaTkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksT 241 (640)
T KOG0102|consen 163 AVITVPAYFNDSQ-RQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKST 241 (640)
T ss_pred eeeccHHHHhHHH-HHHhHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEec
Confidence 4555666677655 34555566667888899999999999888863 34899999998776654 688743 334
Q ss_pred ceeecccHHHHHHHHHHHHH
Q 008949 311 EKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 311 ~~~l~~GG~~it~~L~~lL~ 330 (548)
-.-.-.||.|++.++..++-
T Consensus 242 ngdtflggedfd~~~~~~~v 261 (640)
T KOG0102|consen 242 NGDTHLGGEDFDNALVRFIV 261 (640)
T ss_pred cCccccChhHHHHHHHHHHH
Confidence 45678899999999987664
No 64
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=75.69 E-value=8.1 Score=39.85 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCCeeeeeh---hhHHHHhhc----CCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHH
Q 008949 254 EMLSIVLRDLRFASAVVHQ---EGLAAVFGN----GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (548)
Q Consensus 254 ~l~e~lfe~~~~~~v~~~~---e~lla~y~~----G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~ 326 (548)
++++.+.+..|+. +-++. |+.++..|+ ....++|||+|.++|.++.+.+|.+. ...++++|.-.+++.+.
T Consensus 89 ~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~--~~~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 89 EFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG--EGVSLPLGCVRLTEQFF 165 (300)
T ss_pred HHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe--EEEEEccceEEhHHhhC
Confidence 4677777777764 44444 333333332 22457999999999999999988776 35789999999988764
No 65
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=73.43 E-value=13 Score=41.29 Aligned_cols=69 Identities=19% Similarity=0.111 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCeeeeeh---hhHHHHhhc--C---CceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHH
Q 008949 254 EMLSIVLRDLRFASAVVHQ---EGLAAVFGN--G---LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (548)
Q Consensus 254 ~l~e~lfe~~~~~~v~~~~---e~lla~y~~--G---~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L 325 (548)
++++-+.+..|++ |-++. |+-++.+|. + ...++|||||.++|.++.+.+|.+.. ..++++|.-.+++.+
T Consensus 95 ~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~f 171 (496)
T PRK11031 95 EFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQATS--LFSLSMGCVTWLERY 171 (496)
T ss_pred HHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCceee--eeEEeccchHHHHHh
Confidence 5777777777875 44443 333333322 1 13589999999999999999888763 478999998877654
No 66
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=54.23 E-value=9 Score=42.45 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=33.2
Q ss_pred CceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHH
Q 008949 283 LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (548)
Q Consensus 283 ~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~ 326 (548)
...++|+|+|.++|.++=+.+..+. ...++++|+-.+|+.+.
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt~~~~ 169 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLTERFF 169 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEEeehhhc
Confidence 5679999999999999988766555 35678888877776654
No 67
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=48.52 E-value=56 Score=34.27 Aligned_cols=107 Identities=20% Similarity=0.156 Sum_probs=69.7
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHHHHHHHHHHH---HhcCCCeeeeehhhHHHHhhcCC----
Q 008949 211 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVL---RDLRFASAVVHQEGLAAVFGNGL---- 283 (548)
Q Consensus 211 ~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~~r~l~e~lf---e~~~~~~v~~~~e~lla~y~~G~---- 283 (548)
+-+.++.+...-+ ..-++.|+.- ...+|+++-..-.++..+..+..|- -+|=+....-.-|++-|--|+|.
T Consensus 63 d~~alk~~v~eeY-~~AGi~pesi-~sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~S 140 (473)
T COG4819 63 DEAALKKLVLEEY-QAAGIAPESI-DSGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 140 (473)
T ss_pred cHHHHHHHHHHHH-HHcCCChhcc-ccccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchh
Confidence 5677888877666 4678877643 1347888876654444344333332 33333333444567777777774
Q ss_pred ---ceE-EEEEeCCCcEEEEEeeCCeeecCCceeecccHHHH
Q 008949 284 ---STA-CVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDI 321 (548)
Q Consensus 284 ---~tg-lVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~i 321 (548)
.|+ +=+|||.++|..+-..-|.++..+ -+++||+-+
T Consensus 141 eqr~t~v~NlDIGGGTtN~slFD~Gkv~dTa--CLdiGGRLi 180 (473)
T COG4819 141 EQRLTRVLNLDIGGGTTNYSLFDAGKVSDTA--CLDIGGRLI 180 (473)
T ss_pred hhhceEEEEEeccCCccceeeecccccccce--eeecCcEEE
Confidence 333 457999999999999999988654 489999844
No 68
>PRK10854 exopolyphosphatase; Provisional
Probab=47.66 E-value=22 Score=39.62 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=31.8
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHH
Q 008949 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (548)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L 325 (548)
..++|||||.++|.++-+.+|.+.. ..++++|.-.+++.+
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~--~~S~~lG~vrl~e~f 176 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVSFAQLY 176 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeE--eEEEecceeeHHhhh
Confidence 3589999999999999999987554 345688887777743
No 69
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=46.28 E-value=14 Score=37.35 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCcEEEEEeeCCe
Q 008949 284 STACVVNMGAQVTSVICVEDGV 305 (548)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~ 305 (548)
.+++.||+|..+|.|+||.+|.
T Consensus 130 dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 130 DSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CceEEEecCCcccceEeecchh
Confidence 5799999999999999999997
No 70
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=41.60 E-value=46 Score=33.57 Aligned_cols=45 Identities=33% Similarity=0.364 Sum_probs=36.7
Q ss_pred hcCCCeeeeehhhHHHHhhcCC-------ceEEEEEeCCCcEEEEEeeCCeee
Q 008949 262 DLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVEDGVAL 307 (548)
Q Consensus 262 ~~~~~~v~~~~e~lla~y~~G~-------~tglVVDiG~~~T~V~pV~dG~~l 307 (548)
..+... .+++...||.+|+-. ...+|||||-+.|-.+-|.+|.+.
T Consensus 139 ~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 139 GAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred cCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 344444 899999999988743 467999999999999999999875
No 71
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=37.24 E-value=20 Score=40.46 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHh
Q 008949 472 LAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVL 517 (548)
Q Consensus 472 L~eaI~~SI~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~ 517 (548)
+.++|.+++..+ .. ...=...|+|+||+|.+|.+.+.|.+.+.
T Consensus 311 ~~~~i~~~l~~~-~~--~~~~i~~V~lvGG~sr~p~v~~~l~~~f~ 353 (602)
T PF00012_consen 311 IIEPIEKALKDA-GL--KKEDIDSVLLVGGSSRIPYVQEALKELFG 353 (602)
T ss_dssp THHHHHHHHHHT-T----GGGESEEEEESGGGGSHHHHHHHHHHTT
T ss_pred cccccccccccc-cc--cccccceeEEecCcccchhhhhhhhhccc
Confidence 445666666665 22 23335789999999999999999988765
No 72
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.72 E-value=2.1e+02 Score=29.22 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=33.6
Q ss_pred eeeehhhHHHHhhcCC----ceEEEEEeCCCcEEEEEeeCCeee
Q 008949 268 AVVHQEGLAAVFGNGL----STACVVNMGAQVTSVICVEDGVAL 307 (548)
Q Consensus 268 v~~~~e~lla~y~~G~----~tglVVDiG~~~T~V~pV~dG~~l 307 (548)
++++..-++|.+|+-. .-++|||+|.+.|..+-|.++.+.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 6778888888888765 458999999999999999988754
No 73
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.95 E-value=40 Score=38.89 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=26.7
Q ss_pred HHhhcCCce--EEEEEeCCCcEEEEEeeCCeeecC
Q 008949 277 AVFGNGLST--ACVVNMGAQVTSVICVEDGVALPN 309 (548)
Q Consensus 277 a~y~~G~~t--glVVDiG~~~T~V~pV~dG~~l~~ 309 (548)
|+|=+|..+ ++++|+|..+|.++-+.+|.+...
T Consensus 269 Aa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~~ 303 (674)
T COG0145 269 AAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEIS 303 (674)
T ss_pred HHHhcccccCCEEEEEcCCcceeeeeeecCcEEee
Confidence 445557777 999999999999999998887543
No 74
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=33.28 E-value=34 Score=34.76 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHhhcCChhHHH-hhhcCeEEecCCCCcCChHHHHHHHHhh
Q 008949 470 IGLAEAVTSSILSTGRIDLQR-KLFCSIQLIGGVALTGGLIPAVEERVLH 518 (548)
Q Consensus 470 ~gL~eaI~~SI~~c~~~D~r~-~L~~nIvL~GG~S~ipGf~~RL~~eL~~ 518 (548)
.||.++|.+-+... -.|- ..-++|+++||.++-+|+.+.|+++|..
T Consensus 191 aGl~~sia~r~~~~---~~~~~~~~~~v~~~GGva~n~~~~~~le~~l~~ 237 (262)
T TIGR02261 191 KGIHESMADRLAKL---LKSLGALDGTVLCTGGLALDAGLLEALKDAIQE 237 (262)
T ss_pred HHHHHHHHHHHHHH---HhccCCCCCcEEEECcccccHHHHHHHHHHhcc
Confidence 35666665544221 1111 1224699999999999999999999963
No 75
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=31.64 E-value=27 Score=37.20 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=18.9
Q ss_pred hcCeEEecCCCCcCChHHHHHHHHhh
Q 008949 493 FCSIQLIGGVALTGGLIPAVEERVLH 518 (548)
Q Consensus 493 ~~nIvL~GG~S~ipGf~~RL~~eL~~ 518 (548)
...|+|||||+.=+-|-+||++++..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 56899999999888777777777643
No 76
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=29.90 E-value=37 Score=36.64 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHhhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCccccccc
Q 008949 470 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFMIK 541 (548)
Q Consensus 470 ~gL~eaI~~SI~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~ 541 (548)
.||+.+|.+-+..- .-.+..+-+.|+++||.++.+|+...|++.|. . .|.++++-+|..--
T Consensus 335 AGl~~SIa~rv~~~--l~~~~~i~~~VvftGGva~N~gvv~ale~~Lg--------~-~iivPe~pq~~GAi 395 (404)
T TIGR03286 335 AAACHSVAEQVYEQ--QLQEIDVREPVILVGGTSLIEGLVKALGDLLG--------I-EVVVPEYSQYIGAV 395 (404)
T ss_pred HHHHHHHHHHHHHH--HhhcCCCCCcEEEECChhhhHHHHHHHHHHhC--------C-cEEECCcccHHHHH
Confidence 35666665555420 01123455569999999999999999999985 2 36677777766443
No 77
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=27.55 E-value=30 Score=37.20 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCeeeeeh---hhHHH----HhhcCC--ceEEEEEeCCCcEEEEEeeCCeeecCC
Q 008949 255 MLSIVLRDLRFASAVVHQ---EGLAA----VFGNGL--STACVVNMGAQVTSVICVEDGVALPNT 310 (548)
Q Consensus 255 l~e~lfe~~~~~~v~~~~---e~lla----~y~~G~--~tglVVDiG~~~T~V~pV~dG~~l~~s 310 (548)
+=+.+.+++|+.+..|+- +.++- ..+-.. .+-+|..+|.+ ++++.+.+|.++..+
T Consensus 161 lP~~~~~~~giRrygfHgLS~~~va~~~a~~lgk~~~~~~lIvaHLG~G-~Sv~A~~~GrsvDts 224 (388)
T PF00871_consen 161 LPYIWYEKYGIRRYGFHGLSYRYVARRAAELLGKDYEDLNLIVAHLGSG-ASVCAIKNGRSVDTS 224 (388)
T ss_dssp STHHHHHHHT-S--BS-HHHHHHHHHHHHHHTTSCGGG-EEEEEEESSS-EEEEEEETTEEEEES
T ss_pred CCHHHHHhcCceEecchHHhHHHHHHHHHHHcCCcccccCEEEEEeCCC-cEEEEEECCEEEEec
Confidence 345555555555444432 22332 233332 46799999998 799999999998755
No 78
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=27.37 E-value=62 Score=34.93 Aligned_cols=45 Identities=9% Similarity=0.197 Sum_probs=34.1
Q ss_pred hhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCccccc
Q 008949 491 KLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFM 539 (548)
Q Consensus 491 ~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~ 539 (548)
.+-..|+++||.++-+||...|++.|....+. . +|.++++-+|..
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~---~-~V~Vp~~pq~~G 424 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYGE---V-QINIDPDSIYTG 424 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccCC---C-eEecCCCccHHH
Confidence 45679999999999999999999999754331 2 366777766643
No 79
>PRK03011 butyrate kinase; Provisional
Probab=25.15 E-value=41 Score=35.73 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeecCC
Q 008949 284 STACVVNMGAQVTSVICVEDGVALPNT 310 (548)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~~l~~s 310 (548)
.+.+++.+|.+. +++.|.+|.++..+
T Consensus 176 ~n~I~~hLGtGi-g~gai~~Gk~idgs 201 (358)
T PRK03011 176 LNLIVAHLGGGI-SVGAHRKGRVIDVN 201 (358)
T ss_pred CcEEEEEeCCCc-eeeEEECCEEEecC
Confidence 478999999987 88899999998754
No 80
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.51 E-value=53 Score=33.90 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHhhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHhh
Q 008949 470 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLH 518 (548)
Q Consensus 470 ~gL~eaI~~SI~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~ 518 (548)
.||+++|.+=+... -.|..+-..|+++||.++-+|+...|+++|..
T Consensus 220 aGl~~sia~rv~~~---~~~~~i~~~v~~~GGva~N~~l~~al~~~Lg~ 265 (293)
T TIGR03192 220 AAYCQAMAERVVSL---LERIGVEEGFFITGGIAKNPGVVKRIERILGI 265 (293)
T ss_pred HHHHHHHHHHHHHH---hcccCCCCCEEEECcccccHHHHHHHHHHhCC
Confidence 35666665544221 11335566899999999999999999999963
No 81
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=22.36 E-value=47 Score=35.19 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=35.0
Q ss_pred HHhcCCCeeeeehhhHHHHhhcCC--c--eEEEEEeCCCcEEEEEeeCCeeecCC
Q 008949 260 LRDLRFASAVVHQEGLAAVFGNGL--S--TACVVNMGAQVTSVICVEDGVALPNT 310 (548)
Q Consensus 260 fe~~~~~~v~~~~e~lla~y~~G~--~--tglVVDiG~~~T~V~pV~dG~~l~~s 310 (548)
..++||..+..-.-+--++...|+ . +-+++.+|.+.+ ++.|.+|.++..+
T Consensus 146 ~RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig-~~ai~~Gk~vdgs 199 (351)
T TIGR02707 146 ERKSIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGIS-VAAHRKGRVIDVN 199 (351)
T ss_pred hhhhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCce-eeeEECCEEEEcC
Confidence 467788766544433333444444 3 789999999877 9999999998765
No 82
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=20.95 E-value=65 Score=33.43 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=12.3
Q ss_pred hhcCCC---EEEEcCCCce
Q 008949 14 AERGSN---LVVINPGSAN 29 (548)
Q Consensus 14 ~~~g~~---~iVIhpGS~~ 29 (548)
...|-+ .||||||+.+
T Consensus 140 ~~lG~~~~~~vViHpG~~~ 158 (303)
T PRK02308 140 DLMGIDDSSKINIHVGGAY 158 (303)
T ss_pred HHCCCCCCCEEEECCCccC
Confidence 344667 9999999963
Done!