Query 008949
Match_columns 548
No_of_seqs 257 out of 1471
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:22:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo0_A Actin-related protein 8 100.0 1.1E-82 3.9E-87 709.3 30.4 494 5-545 1-560 (593)
2 4am6_A Actin-like protein ARP8 100.0 1.2E-78 4.2E-83 663.0 26.4 457 15-521 37-529 (655)
3 3qb0_A Actin-related protein 4 100.0 5.4E-59 1.8E-63 504.2 28.6 316 172-544 62-466 (498)
4 3dwl_A Actin-related protein 3 100.0 4.4E-59 1.5E-63 499.0 20.4 294 172-545 72-392 (427)
5 1k8k_B ARP2, actin-like protei 100.0 1.6E-55 5.4E-60 467.9 11.8 295 172-546 53-361 (394)
6 2fxu_A Alpha-actin-1, actin, a 100.0 2E-52 7E-57 441.0 28.2 294 172-545 50-345 (375)
7 1k8k_A ARP3, actin-like protei 100.0 3.2E-49 1.1E-53 422.0 27.1 299 172-547 58-385 (418)
8 1jce_A ROD shape-determining p 99.9 2.3E-25 7.7E-30 231.2 22.5 267 173-544 41-320 (344)
9 3h1q_A Ethanolamine utilizatio 99.6 1.2E-15 4E-20 152.6 12.8 213 191-545 58-270 (272)
10 2v7y_A Chaperone protein DNAK; 99.5 5.6E-14 1.9E-18 153.4 13.7 220 239-544 112-345 (509)
11 1dkg_D Molecular chaperone DNA 99.5 4.7E-14 1.6E-18 148.0 11.1 223 239-547 138-379 (383)
12 3qfu_A 78 kDa glucose-regulate 99.5 2.3E-14 7.7E-19 150.6 4.8 91 239-330 156-255 (394)
13 3i33_A Heat shock-related 70 k 99.3 2.4E-13 8.1E-18 143.6 2.4 91 239-330 161-263 (404)
14 2ych_A Competence protein PILM 99.1 1.3E-09 4.5E-14 113.8 14.8 89 257-363 157-252 (377)
15 1yuw_A Heat shock cognate 71 k 98.9 4.9E-09 1.7E-13 115.5 11.5 91 239-330 142-242 (554)
16 2kho_A Heat shock protein 70; 98.8 2E-08 6.7E-13 111.8 11.9 92 239-331 138-242 (605)
17 3d2f_A Heat shock protein homo 98.8 3.6E-08 1.2E-12 110.9 14.1 91 239-330 141-246 (675)
18 4a2a_A Cell division protein F 98.8 2.3E-08 8E-13 106.3 10.9 86 258-361 175-265 (419)
19 4gni_A Putative heat shock pro 98.7 1.2E-08 4.1E-13 107.7 8.4 110 215-331 135-255 (409)
20 2fsj_A Hypothetical protein TA 98.6 7E-08 2.4E-12 100.0 7.6 137 172-332 78-240 (346)
21 4b9q_A Chaperone protein DNAK; 98.6 3.5E-07 1.2E-11 101.7 13.3 109 216-331 121-242 (605)
22 2d0o_A DIOL dehydratase-reacti 97.9 3.4E-05 1.2E-09 82.8 9.3 93 251-361 369-466 (610)
23 1nbw_A Glycerol dehydratase re 97.8 5.3E-05 1.8E-09 81.6 10.4 72 272-361 392-468 (607)
24 3js6_A Uncharacterized PARM pr 97.3 0.00034 1.2E-08 72.5 7.1 68 265-332 154-232 (355)
25 2zgy_A Plasmid segregation pro 97.2 0.0003 1E-08 71.6 5.2 70 262-331 137-212 (320)
26 4apw_A ALP12; actin-like prote 96.9 0.00097 3.3E-08 68.2 5.8 67 265-331 149-219 (329)
27 1t6c_A Exopolyphosphatase; alp 88.0 1.5 5.2E-05 44.1 8.9 42 283-326 137-178 (315)
28 3mdq_A Exopolyphosphatase; str 81.7 1.5 5.3E-05 44.1 5.5 40 284-325 131-170 (315)
29 3cet_A Conserved archaeal prot 81.4 1.2 4.1E-05 45.2 4.5 25 284-308 127-151 (334)
30 3cer_A Possible exopolyphospha 80.9 1.5 5.3E-05 44.6 5.2 42 284-325 146-191 (343)
31 3hi0_A Putative exopolyphospha 76.4 4.3 0.00015 43.6 7.2 39 284-324 140-178 (508)
32 1u6z_A Exopolyphosphatase; alp 74.3 4.8 0.00016 43.3 6.9 39 285-325 138-176 (513)
33 4ehu_A Activator of 2-hydroxyi 58.3 4.6 0.00016 39.1 2.6 63 267-329 73-140 (276)
34 3aap_A Ectonucleoside triphosp 51.6 10 0.00035 38.6 3.9 36 284-319 140-177 (353)
35 2fsj_A Hypothetical protein TA 47.4 3.2 0.00011 42.1 -0.7 32 20-52 23-54 (346)
36 4apw_A ALP12; actin-like prote 45.9 6.2 0.00021 39.6 1.2 40 472-516 261-300 (329)
37 3js6_A Uncharacterized PARM pr 43.3 3.4 0.00012 42.2 -1.3 43 471-516 272-316 (355)
38 2gup_A ROK family protein; sug 30.8 88 0.003 30.0 6.9 52 255-309 87-143 (292)
39 2e1z_A Propionate kinase; TDCD 29.5 21 0.00073 37.1 2.1 28 284-312 210-237 (415)
40 2zgy_A Plasmid segregation pro 25.0 24 0.00081 34.9 1.5 15 20-34 2-16 (320)
41 1g99_A Acetate kinase; alpha/b 24.3 27 0.00092 36.3 1.7 28 284-312 202-229 (408)
42 2iir_A Acetate kinase; transfe 23.9 24 0.00083 36.6 1.3 31 284-315 201-231 (403)
43 2qm1_A Glucokinase; alpha-beta 22.8 1.8E+02 0.0063 28.0 7.6 47 261-309 106-159 (326)
44 2ews_A Pantothenate kinase; PA 21.4 59 0.002 32.0 3.5 64 470-539 214-278 (287)
45 4ijn_A Acetate kinase, acetoki 21.4 35 0.0012 35.3 1.9 55 255-310 166-229 (398)
46 3cj1_A Ectonucleoside triphosp 20.4 65 0.0022 33.9 3.8 22 284-305 190-211 (456)
47 2aa4_A Mannac kinase, putative 20.1 2.4E+02 0.0083 26.7 7.7 46 261-309 94-146 (289)
No 1
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-82 Score=709.34 Aligned_cols=494 Identities=28% Similarity=0.429 Sum_probs=346.8
Q ss_pred cccCchhhHhhcCCC-EEEEcCCCceeeeecCCCCCCCccceeeeeecCCCCcccchhhhccccc--cchhhhhHHHHHH
Q 008949 5 KTVVPSQLIAERGSN-LVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQV--TTSQHVERERAYD 81 (548)
Q Consensus 5 ~~~~~~~~~~~~g~~-~iVIhpGS~~lriG~Asd~~P~~ip~~iAr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 81 (548)
++|+|++..++++++ ||||||||+|||||||+|..|++||||||||+++.......+..+.... ..+..++++..+.
T Consensus 1 ~p~~~~~~~~~~~~~~iIVIdpGS~~~riG~A~d~~P~~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (593)
T 4fo0_A 1 GPLVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLK 80 (593)
T ss_dssp CCCCCGGGTTTSGGGGEEEEECCSSEEEEEETTCSSCEEEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHH
T ss_pred CCCCCCccccccCCCCEEEEeCCCCCeEeeecCCCCCCeeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHH
Confidence 479999999998765 9999999999999999999999999999999876333323222211111 1222223333333
Q ss_pred HHHhhccCCcchhhhhcCCCCcccccccccccccccccccccccccccCCCCCCCcccccccccccCcccccCCCCCccc
Q 008949 82 VIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDI 161 (548)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~~e~~~~~~~~~~ 161 (548)
.+.+.++.. +..+++|+. ++++|++++||++.+||.+++++++.+
T Consensus 81 ~~~~~~~~~----------------------------------~~~~~~r~~-~~s~~~~~~~n~~~~p~~i~~~~~~~~ 125 (593)
T 4fo0_A 81 MVDQAIWSK----------------------------------KMSNGTRRI-PVSPEQARSYNKQMRPAILDHCSGNKW 125 (593)
T ss_dssp HHHHHHHHS----------------------------------CCTTSCCCC-CCCHHHHHHHHTTCCCEEEESSCSCCC
T ss_pred HHHHHHHHH----------------------------------hhhcccccC-CCcHHHhhhhhccCCCcccCCCCcccc
Confidence 322222111 222344444 499999999999999999987765543
Q ss_pred ccccccccCCcceEEccccccCCCCCCceEecceecCEEeecC--CCCccccHHHHHHHHHHHHhhhcCCCCCCCCccce
Q 008949 162 KELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQ--HYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA 239 (548)
Q Consensus 162 ~~~~~~~~~~~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~--~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~ 239 (548)
.+ ....+++|||++|+++.+.+.|.|+|||+||.||++. |.|++.+|+|+|.||+|+|+++|+|++++.+.| +
T Consensus 126 ~~----~~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~-p 200 (593)
T 4fo0_A 126 TN----TSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYY-R 200 (593)
T ss_dssp CC----CTTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHHHHHHHHHHHHHHHHTSCCCGGGGGGC-E
T ss_pred cc----ccccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcCHHHHHHHHHHHHHHhcCCCchhccCC-c
Confidence 22 2345789999999999888899999999999999974 559999999999999999999999999886666 5
Q ss_pred EEEccCCC-ChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccH
Q 008949 240 ILVLPESF-DNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGG 318 (548)
Q Consensus 240 VLvi~~~~-~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG 318 (548)
||+|++++ ++.++++|+++|||.|+||+++++++++||+||+|++||||||||++.|+|+||+||+++.++++++++||
T Consensus 201 vlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG 280 (593)
T 4fo0_A 201 CILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGG 280 (593)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEeCCCceeeeeeECCEEehhheEEecccH
Confidence 66665555 45555569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchh-hhhccccCCCCCC-Ccceeee---eec
Q 008949 319 EDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAV-AVVHSYEDGMPPG-SHKTRLI---ALN 393 (548)
Q Consensus 319 ~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~-~~~~~~~~~~p~~-~~k~~~~---~~~ 393 (548)
++||++|.++|+.++ +| +.+.++.+..|+.++++|||++|||+.+..... ..++.. .|.+ +.++.++ +.+
T Consensus 281 ~~lt~~L~~lL~~~~-~~-~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~~~~~~~---~p~~~~~~~~~~~~~E~~ 355 (593)
T 4fo0_A 281 SDVSRCFYWLMQRAG-FP-YRECQLTNKMDCLLLQHLKETFCHLDQDISGLQDHEFQIR---HPDSPALLYQFRLGDEKL 355 (593)
T ss_dssp HHHHHHHHHHHHHTT-CS-CTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCEEEEEEEC---CTTSCEEEEEEEECTHHH
T ss_pred HHHHHHHHHHHHhcC-CC-ccccccccchhHHHHHHHHHHhcccccchHHhhhhhhhcc---cCCCCceeeEEeccchhh
Confidence 999999999998775 33 456677778899999999999999997543221 112222 2332 3344443 467
Q ss_pred CCCCCccCCcccCCCCCCCC---CCCCCCCc---------------------------cccCCCCcccccC-CCCCCCCC
Q 008949 394 VPPMGLFYPKLLVPDVYPPP---PRSWFNDY---------------------------EDMLEDTWHTDFP-RRSDISDN 442 (548)
Q Consensus 394 ~aP~~lf~p~i~~~e~~~~p---~~~~~~~~---------------------------ed~~~d~~~~~~~-eR~~~~E~ 442 (548)
.+|+++|+|.++..+..... .+. ..++ ...++++....++ +|+.+||.
T Consensus 356 ~~p~~lf~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~ 434 (593)
T 4fo0_A 356 QAPMALFYPATFGIVGQKMTTLQHRS-QGDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPER 434 (593)
T ss_dssp HHHHTTTSGGGGCCCSSCCEEECC--------------------------------------------------------
T ss_pred cCchhhcChhhhcccccccchhhhhc-ccCcccchhhhhhhhcccchhhhhhcccccccccCCCCcccccccccccCchh
Confidence 89999999988754321000 000 0000 1134566667775 89999999
Q ss_pred CCCCCCCCCC-CC-------CCCCcc--------CCCCCcccCCCHHHHHHHHHhhcCChhHHHhhhcCeEEecCCCCcC
Q 008949 443 FYPGINVGLP-MW-------ESYPVL--------TTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTG 506 (548)
Q Consensus 443 lf~~~~~~~~-~~-------~~~~~~--------~~~~~~~~~~gL~eaI~~SI~~c~~~D~r~~L~~nIvL~GG~S~ip 506 (548)
||.+...... .. ...+.. .......+..||+++|++||.+|+.+|+|++||+||||+||+|+||
T Consensus 435 lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~p 514 (593)
T 4fo0_A 435 LHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFH 514 (593)
T ss_dssp ------------------------------------CHHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCB
T ss_pred ccCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchh
Confidence 9976422100 00 000000 0001123457999999999999944799999999999999999999
Q ss_pred ChHHHHHHHHhhhCCCCC-----ccceEEeCC---Cccccccccccc
Q 008949 507 GLIPAVEERVLHAIPSNE-----AIDMVEVSS---HLFFFMIKLISC 545 (548)
Q Consensus 507 Gf~~RL~~eL~~~~p~~~-----~v~~V~~~~---~R~~~~~~~~~~ 545 (548)
||.+||++||+.++|..+ +| +|.+++ +|+|++|++.|=
T Consensus 515 Gf~~RL~~eL~~~~p~~~~~~~~~v-~v~~~p~~~d~~~~aW~GgSi 560 (593)
T 4fo0_A 515 KAQEFLQHRILNKMPPSFRRIIENV-DVITRPKDMDPRLIAWKGGAV 560 (593)
T ss_dssp THHHHHHHHHHHHSCHHHHHHSSCC-EEESSGGGCCTTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcchhccccceE-EEECCCCCCCCceeeehhhHH
Confidence 999999999999999764 35 476665 899999998764
No 2
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=1.2e-78 Score=663.05 Aligned_cols=457 Identities=21% Similarity=0.362 Sum_probs=338.9
Q ss_pred hcCCCEEEEcCCCceeeeecCCCCCCCccceeeeeecCCCCcccchhhhccccccchhhhhHHHHHHHHHhhccCCcchh
Q 008949 15 ERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDE 94 (548)
Q Consensus 15 ~~g~~~iVIhpGS~~lriG~Asd~~P~~ip~~iAr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (548)
..+++||||||||+|||||||||++|++||||||||++.......... ..+....+..++++..+.+|++.||.+
T Consensus 37 ~~~~~~IVIHpGS~~lRIG~AsD~~P~~ip~~iA~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~k~r---- 111 (655)
T 4am6_A 37 NDPTATIVIHPGSNSIKIGFPKDDHPVVVPNCVAVPKKWLDLENSEHV-ENVCLQREQSEEFNNIKSEMEKNFRER---- 111 (655)
T ss_dssp CCGGGEEEEECCSSEEEEECTTSSSCEEEESCEEEEGGGSCCSSSCCC-CTTCCCSCCCHHHHHHHHHHHHHHHHH----
T ss_pred cCCCCeEEEcCCCcceeeeecCCCCCcccceeEEeccccccCCCcccc-CccccchhhhHHHHHHHHHHHHHHHHH----
Confidence 457999999999999999999999999999999999765211100000 000012234467777887777777532
Q ss_pred hhhcCCCCcccccccccccccccccccccccccccCCCCCCCcccccccccccCcccccCCCCCcccccccccccCCcce
Q 008949 95 EVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREF 174 (548)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 174 (548)
|+.||||+.| |++|++++||++.+||.|++|||+...+|... .+++
T Consensus 112 ------------------------------mr~~k~r~~p-n~~e~~~~fN~~~~Pe~i~~~nDp~~~~W~~~---~~d~ 157 (655)
T 4am6_A 112 ------------------------------MRYYKRKVPG-NAHEQVVSFNENSKPEIISEKNDPSPIEWIFD---DSKL 157 (655)
T ss_dssp ------------------------------HHHHSCCCST-TCCSSTTCCEEEECSCCCCSSSSCCSCCCBCC---TTSC
T ss_pred ------------------------------HhhcCCCCCC-CCHHHHHHhcCCCCCeECCCCCCccccccccC---CCCE
Confidence 5667888777 99999999999999999999988887766432 3689
Q ss_pred EEccccccCCCCCCceEecceecCEEeec--CCCCccccHHHHHHHHHHHHh-hhcCCCCC---CCCccceEEEccCCCC
Q 008949 175 ICGEEALRVSPTEPYCIHRPIRRGHLNIS--QHYPMQQVLEDLYAIWDWILT-EKLHIPRS---ERNLYSAILVLPESFD 248 (548)
Q Consensus 175 ~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~--~~~s~~~~~~~le~i~~~~l~-~~L~i~~~---d~~~~~~VLvi~~~~~ 248 (548)
|||+||+.+. .+.+.++|||++|.|+++ +|.|+|.+|+++|.||+|+|. ++|+++++ ++ +|||++++++
T Consensus 158 ~VGdEA~~~~-r~~l~l~~PI~~GvI~~~s~Dy~s~q~~WD~mE~Iw~y~f~~~~L~V~p~~~~e~----pVLLTEPpln 232 (655)
T 4am6_A 158 YYGSDALRCV-DEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKLLEHALNSETLNVKPTKFNQY----KVVLVIPDIF 232 (655)
T ss_dssp EEHHHHHTBC-TTTEEEECSEETTEECTTCSSCSSHHHHHHHHHHHHHHHHBSSSCBCCGGGGGGC----EEEEEECTTC
T ss_pred EEehHHhhCC-ccCeEEeccccCCEecccCCccccccccHHHHHHHHHHHhccccccccccccCCC----cEEEEeCCCC
Confidence 9999999863 368999999999999854 566999999999999999997 38999886 45 8999988888
Q ss_pred hHHHHH-HHHHHHHhcCCCeeeeehhhHHHHhhcC-CceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHH
Q 008949 249 NREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG-LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (548)
Q Consensus 249 ~~~~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G-~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~ 326 (548)
+...|+ |+++|||.|+|++++++++++||+||+| .++|||||+|++.|+|+||++|+++.+++.++++||+++|++|.
T Consensus 233 p~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVVDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~ 312 (655)
T 4am6_A 233 KKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFA 312 (655)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEEcCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHH
Confidence 776665 9999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchh-hhhccccCCCCCCCcceeee---eecCCCCCccCC
Q 008949 327 WTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAV-AVVHSYEDGMPPGSHKTRLI---ALNVPPMGLFYP 402 (548)
Q Consensus 327 ~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~-~~~~~~~~~~p~~~~k~~~~---~~~~aP~~lf~p 402 (548)
++|+.++ +| |++++|.+..+++++++|||++|||+..++.+. ..++.+.++.+ +.||.++ ++++||++||+|
T Consensus 313 kLL~~rg-yp-y~~~~f~t~~e~eiVrdIKEk~CyVs~~Di~~q~~~f~~r~P~~~--~~ky~i~vgdErflaPe~lF~P 388 (655)
T 4am6_A 313 LFLLQSD-FP-LQDWKIDSKHGWLLAERLKKNFTTFQDADVAVQLYNFMNRSPNQP--TEKYEFKLFDEVMLAPLALFFP 388 (655)
T ss_dssp HHHHHTT-CS-CCSCCTTSHHHHHHHHHHHHHHCCCCGGGCCSEEEEEEECCSSSC--EEEEEEEESSHHHHHHHGGGST
T ss_pred HHHHHcC-CC-ccccCCCCcchHHHHHHHHHheEEEcccchhhhhhcceeccCCCC--CcceEEEECCeehhCchhcCCh
Confidence 9998875 22 356678888899999999999999976555321 22333333333 4566664 567999999999
Q ss_pred cccCCCCCCCCC----CCCC----CCccccCCCCcccccCCCCCCCCCCCCCCCCC--CCC-----------CCCCCccC
Q 008949 403 KLLVPDVYPPPP----RSWF----NDYEDMLEDTWHTDFPRRSDISDNFYPGINVG--LPM-----------WESYPVLT 461 (548)
Q Consensus 403 ~i~~~e~~~~p~----~~~~----~~~ed~~~d~~~~~~~eR~~~~E~lf~~~~~~--~~~-----------~~~~~~~~ 461 (548)
.+++.+...... +.++ +-|++.++|+.+..-.. .....++...... .+. .+..+...
T Consensus 389 ei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (655)
T 4am6_A 389 QIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLSQFE--SKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENY 466 (655)
T ss_dssp HHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCSCCCHHHHH--HHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSC
T ss_pred hhcccccccccccchhhhhcCccccccCCCCCCccchhHHh--hhccccCCCCccHhhhhhhhhcccccccccccCCccc
Confidence 998654432211 1122 33555556655432100 0000001000000 000 00000000
Q ss_pred CCCCcccCCCHHHHHHHHHhhcCC-hhHHH--hhhcCeEEecCCCCcCChHHHHHHHHhhhCC
Q 008949 462 TKPKKEEKIGLAEAVTSSILSTGR-IDLQR--KLFCSIQLIGGVALTGGLIPAVEERVLHAIP 521 (548)
Q Consensus 462 ~~~~~~~~~gL~eaI~~SI~~c~~-~D~r~--~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p 521 (548)
.........||++||++||.+|+. .|.+| +||+||+||||||+||||+..|++||...-|
T Consensus 467 ~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y~nilivGggski~g~~~~L~dri~i~rp 529 (655)
T 4am6_A 467 GNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRINIWRP 529 (655)
T ss_dssp SCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHHTCEEEESTTCCCTTHHHHHHHHHHHHSC
T ss_pred ccccccccccHHHHHHHHHHhhhccccHHHHHHHhhcEEEEcCcccCccHHHHHHHHHHhhCc
Confidence 001113457999999999996542 36765 9999999999999999999999999987444
No 3
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-59 Score=504.15 Aligned_cols=316 Identities=18% Similarity=0.259 Sum_probs=242.5
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
++++||+++.... +..+.++|||++|.+. |||++|.||+|+|.+.|++++.++. +|||+++++++..
T Consensus 62 ~~~~vG~e~~~~~-r~~l~l~~Pi~~GvI~---------dwd~~E~iw~~~f~~~L~v~p~~~~---pvlltep~~n~~~ 128 (498)
T 3qb0_A 62 NKKIFSEQSIGIP-RKDYELKPIIENGLVI---------DWDTAQEQWQWALQNELYLNSNSGI---PALLTEPVWNSTE 128 (498)
T ss_dssp CCEECCTTGGGSC-CTTEEEEESEETTEES---------CHHHHHHHHHHHHHHTSCCSCCTTC---CEEEEECTTCCHH
T ss_pred ccEEEecHHHhcC-cCceEEeccCcCCEEc---------cHHHHHHHHHHHHHhhhCCCcccCC---ceEEEeCCCCcHH
Confidence 3467899754432 4689999999999998 9999999999999888999887652 7999999998877
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.|+ |+|+|||.|+|++++++.+++||+||+|+++|||||+|++.|+|+||++|+++++++.++++||+++|++|.++|+
T Consensus 129 ~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~ 208 (498)
T 3qb0_A 129 NRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALE 208 (498)
T ss_dssp HHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCCcEEEEEEeCCEEccccceeccccHHHHHHHHHHHHH
Confidence 765 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcc-----------cccc------cccc-cHHHHHHHHHHceeccCC-ccchhhhhccccCCCCCCCcceeeee
Q 008949 331 HHQTWPQIR-----------TDIL------TKAM-DLLMLNRIKESYCEIKEG-EIDAVAVVHSYEDGMPPGSHKTRLIA 391 (548)
Q Consensus 331 ~~~~~p~~~-----------~~~l------~~~~-d~~l~e~iKe~~c~v~~~-~~~~~~~~~~~~~~~p~~~~k~~~~~ 391 (548)
..+..|.|. .+.+ .+.. +.+++++|||++|||+.+ +.+... .......
T Consensus 209 ~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iKE~~c~Va~~~~~~~~~---~~~~~~~---------- 275 (498)
T 3qb0_A 209 PKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETK---TELSSTA---------- 275 (498)
T ss_dssp TSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHHHHTCCCCSSCHHHHHH---HHHHTCC----------
T ss_pred hccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHHHhhEEecCCccHhHHh---hhccCcC----------
Confidence 654333321 1111 1112 456999999999999874 221100 0000000
Q ss_pred ecCCCCCccCCcccCCCCCCCCCCCCCCCccccCCCCcccccC-C-CCCCCCCCCCCCCCCCCC-C--------------
Q 008949 392 LNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-R-RSDISDNFYPGINVGLPM-W-------------- 454 (548)
Q Consensus 392 ~~~aP~~lf~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-e-R~~~~E~lf~~~~~~~~~-~-------------- 454 (548)
. ..| .+|||+.+.++ | ||.+||.||.|...|.+. |
T Consensus 276 ----------------------~----~~y--eLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~ 327 (498)
T 3qb0_A 276 ----------------------K----RSI--ESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRND 327 (498)
T ss_dssp ----------------------C----EEE--ECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCC
T ss_pred ----------------------c----eEE--ECCCCCEEEECchHhhhCchhhCCHhHcCCcccccccccccccccccc
Confidence 0 001 34566666665 6 777777777665433210 0
Q ss_pred --------------------CC-CCc-c-CC--------------------------CCCcccCCCHHHHHHHHHhhcCC
Q 008949 455 --------------------ES-YPV-L-TT--------------------------KPKKEEKIGLAEAVTSSILSTGR 485 (548)
Q Consensus 455 --------------------~~-~~~-~-~~--------------------------~~~~~~~~gL~eaI~~SI~~c~~ 485 (548)
++ ..+ . .+ .....+..||+++|++||++| |
T Consensus 328 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~c-d 406 (498)
T 3qb0_A 328 YVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSS-D 406 (498)
T ss_dssp CCCCCBCC-----------------------------------------------------CCSCCHHHHHHHHHHTS-C
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhC-C
Confidence 00 000 0 00 000125689999999999999 8
Q ss_pred hhHHHhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeC---CCcccccccccc
Q 008949 486 IDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVS---SHLFFFMIKLIS 544 (548)
Q Consensus 486 ~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~---~~R~~~~~~~~~ 544 (548)
.|+|+.||+||+|+||+|++|||.+||+.||+.++| .++| +|.++ ++|+|++|.+.|
T Consensus 407 ~d~r~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~~i-~v~~~~~~~er~~s~WiGgs 466 (498)
T 3qb0_A 407 VDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKF-RILTTGHTIERQYQSWLGGS 466 (498)
T ss_dssp TTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TSCC-CEECCSCTGGGGSHHHHHHH
T ss_pred HHHHHHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CCee-EEEcCCCCCccCccEEcccE
Confidence 999999999999999999999999999999999999 8889 58887 799999997765
No 4
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-59 Score=499.04 Aligned_cols=294 Identities=20% Similarity=0.270 Sum_probs=237.7
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
++++||+||+... ...+.++|||++|.+. |||++|.||+|+|.+.|++++.++ +||++++++++..
T Consensus 72 ~~~~vG~ea~~~~-~~~l~~~~Pi~~GvI~---------dwd~~e~iw~~~~~~~L~v~~~~~----pvlltep~~~~~~ 137 (427)
T 3dwl_A 72 LDFFIGNDALKKA-SAGYSLDYPIRHGQIE---------NWDHMERFWQQSLFKYLRCEPEDH----YFLLTEPPLNPPE 137 (427)
T ss_dssp SCCEETHHHHHTH-HHHCCCCCSEETTEEC---------CHHHHHHHHHHHHHTTSCCCGGGC----EEEEEECTTCCHH
T ss_pred CCeEEchHHhhCc-ccCcEEecCcccCeec---------cHHHHHHHHHHHHhHhhCCCCcCC----cEEEEcCCCCCHH
Confidence 5789999999865 2368999999999998 999999999999988999998887 9999999998877
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhcC--------CceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG--------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDIS 322 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G--------~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it 322 (548)
.|+ ++|++||.|+||+++++.+++||+||+| .++|||||+|++.|+|+||+||+++.++..++++||+++|
T Consensus 138 ~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt 217 (427)
T 3dwl_A 138 NRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVT 217 (427)
T ss_dssp HHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHH
T ss_pred HHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHH
Confidence 776 9999999999999999999999999999 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCC
Q 008949 323 RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYP 402 (548)
Q Consensus 323 ~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p 402 (548)
++|.++|+.++. . ..+.+++++|||++|||+.+-. ..+..+.. .+.. +
T Consensus 218 ~~L~~lL~~~~~-------~---~~~~~~~~~IKe~~cyv~~d~~---~e~~~~~~-~~~~-----~------------- 265 (427)
T 3dwl_A 218 YFVQSLLRDRNE-------P---DSSLKTAERIKEECCYVCPDIV---KEFSRFDR-EPDR-----Y------------- 265 (427)
T ss_dssp HHHHHTTC------------------CHHHHHHHHHHCCCCSCHH---HHHHHTTC------------------------
T ss_pred HHHHHHHHHcCC-------C---chhHHHHHHHHHhcCcccCCHH---HHHHHhhc-Cccc-----c-------------
Confidence 999999987652 1 3567899999999999986311 11111110 0100 0
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCCc--ccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccc-CCCHHHHHHH
Q 008949 403 KLLVPDVYPPPPRSWFNDYEDMLEDTW--HTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEE-KIGLAEAVTS 478 (548)
Q Consensus 403 ~i~~~e~~~~p~~~~~~~~ed~~~d~~--~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~-~~gL~eaI~~ 478 (548)
..|+-..+||. .+.++ +||.+||.||+|...| .+ ..||+++|.+
T Consensus 266 ----------------~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g----------------~~~~~gI~~~i~~ 313 (427)
T 3dwl_A 266 ----------------LKYASESITGHSTTIDVGFERFLAPEIFFNPEIAS----------------SDFLTPLPELVDN 313 (427)
T ss_dssp ----------------CCBCC---------CBCCTHHHHSGGGGTCGGGTC----------------SSCCSCHHHHHHH
T ss_pred ----------------ceeEeeCCCCCeeEEEEChHhhhChhhccCchhcC----------------CccCCCccHHHHH
Confidence 00110012333 56666 8999999999987554 33 4799999999
Q ss_pred HHhhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHhhhC--------------CCCCccceEEeCCCcccccccccc
Q 008949 479 SILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI--------------PSNEAIDMVEVSSHLFFFMIKLIS 544 (548)
Q Consensus 479 SI~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~--------------p~~~~v~~V~~~~~R~~~~~~~~~ 544 (548)
||++| |+|+|++||+||+|+||+|++|||.+||++||+.++ |..++| +|.++++|+|++|.+.|
T Consensus 314 sI~~c-~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~v-kv~~~~~r~~s~WiGGS 391 (427)
T 3dwl_A 314 VVQSS-PIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDV-NVISHKRQRNAVWFGGS 391 (427)
T ss_dssp HHHTS-CHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCC-CEECCTTCTTHHHHHHH
T ss_pred HHHhC-CHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeE-EEecCCccccceecCce
Confidence 99999 899999999999999999999999999999999987 556788 59999999999997655
Q ss_pred c
Q 008949 545 C 545 (548)
Q Consensus 545 ~ 545 (548)
-
T Consensus 392 i 392 (427)
T 3dwl_A 392 L 392 (427)
T ss_dssp H
T ss_pred e
Confidence 3
No 5
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=1.6e-55 Score=467.86 Aligned_cols=295 Identities=21% Similarity=0.334 Sum_probs=143.0
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHH-hhhcCCCCCCCCccceEEEccCCCChH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWIL-TEKLHIPRSERNLYSAILVLPESFDNR 250 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l-~~~L~i~~~d~~~~~~VLvi~~~~~~~ 250 (548)
+++++|++|...+ ..+.++|||++|.+. ||++++.||+|+| .+.|++++.++ +||++++++++.
T Consensus 53 ~~~~vG~ea~~~~--~~~~~~~Pi~~G~i~---------dwd~~e~i~~~~~~~~~L~~~~~~~----~vllt~p~~~~~ 117 (394)
T 1k8k_B 53 KDLMVGDEASELR--SMLEVNYPMENGIVR---------NWDDMKHLWDYTFGPEKLNIDTRNC----KILLTEPPMNPT 117 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEChHHHhcC--CCceeeccccCCEEe---------cHHHHHHHHHHHhcccccCcCCCCC----cEEEEECCCCCH
Confidence 4678999998874 578999999999998 9999999999999 78899988877 899998888776
Q ss_pred HHHH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHH
Q 008949 251 EIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 329 (548)
Q Consensus 251 ~~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL 329 (548)
..|+ +++++||.||+++++++.+++||+||+|+++|||||+|+++|+|+||++|+++.++..++++||+++|++|.++|
T Consensus 118 ~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l 197 (394)
T 1k8k_B 118 KNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLL 197 (394)
T ss_dssp ------------------------------------CCEEEECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCCceEeeeeECCEEcccceEEeeccHHHHHHHHHHHH
Confidence 6665 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcccCCCC
Q 008949 330 RHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDV 409 (548)
Q Consensus 330 ~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~ 409 (548)
+.++ +++.+..++.++++||+++|+++.+... ....... .... +
T Consensus 198 ~~~~-------~~~~~~~~~~~ae~iK~~~~~v~~d~~~---~~~~~~~--~~~~-----------------------~- 241 (394)
T 1k8k_B 198 LLRG-------YAFNHSADFETVRMIKEKLCYVGYNIEQ---EQKLALE--TTVL-----------------------V- 241 (394)
T ss_dssp HHTT-------CCCCTTTTHHHHHHHHHHHCCCCSSHHH---HHHHHHH--CSTT-----------------------C-
T ss_pred HhcC-------CCCCcHHHHHHHHHHHHhheeEecCHHH---HHHhhcc--CCcC-----------------------c-
Confidence 8764 2454456889999999999999752110 0000000 0000 0
Q ss_pred CCCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhcCChhH
Q 008949 410 YPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 488 (548)
Q Consensus 410 ~~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~D~ 488 (548)
..| .+|||+.+.++ +||.++|.||.|...+ .+..+|+++|.++|.+| +.|+
T Consensus 242 ---------~~~--~lpdg~~i~i~~erf~~~E~Lf~p~~~~----------------~~~~~i~~~i~~~i~~~-~~d~ 293 (394)
T 1k8k_B 242 ---------ESY--TLPDGRIIKVGGERFEAPEALFQPHLIN----------------VEGVGVAELLFNTIQAA-DIDT 293 (394)
T ss_dssp ---------EEE--ECTTSCEEEECTHHHHTGGGGTCGGGGT----------------CCSCCHHHHHHHHHHHS-CTTT
T ss_pred ---------eEE--ECCCCCEEEECchhhcChHhhCCchhcc----------------CCCCCHHHHHHHHHHhC-CHHH
Confidence 001 24566777776 8999999999986543 45679999999999999 8999
Q ss_pred HHhhhcCeEEecCCCCcCChHHHHHHHHhhhC-----------CCCCccceEEeCCCcccccccccccc
Q 008949 489 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAI-----------PSNEAIDMVEVSSHLFFFMIKLISCF 546 (548)
Q Consensus 489 r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~-----------p~~~~v~~V~~~~~R~~~~~~~~~~~ 546 (548)
|++|++||+|+||+|++|||.+||++||..++ |..+++ +|..+++|+|++|++.|=+
T Consensus 294 r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v-~v~~~~~~~~~~w~Ggsil 361 (394)
T 1k8k_B 294 RSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKI-RIEDPPRRKHMVFLGGAVL 361 (394)
T ss_dssp HHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC--------------------
T ss_pred HHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEE-EEecCCCcceeEEhhhHHh
Confidence 99999999999999999999999999999988 888888 5888899999999887643
No 6
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=2e-52 Score=441.00 Aligned_cols=294 Identities=18% Similarity=0.310 Sum_probs=245.6
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
+++++|++|...+ ..+.++|||++|.+. ||+++|.||+|+|.+.|++++.++ +++++++++++..
T Consensus 50 ~~~~vG~~a~~~~--~~~~~~~Pi~~G~i~---------d~d~~e~i~~~~~~~~L~~~~~~~----~vvit~p~~~~~~ 114 (375)
T 2fxu_A 50 KDSYVGDEAQSKR--GILTLKYPIEHGIIT---------NWDDMEKIWHHTFYNELRVAPEEH----PTLLTEAPLNPKA 114 (375)
T ss_dssp -CCEEHHHHHHHT--TSEEEECSEETTEEC---------CHHHHHHHHHHHHHTTSCCCGGGS----CEEEEECTTCCHH
T ss_pred CCeEechhHhhcC--cccceeccccCCccc---------CHHHHHHHHHHHHHHhcCCCCcCC----cEEEEeCCCCcHH
Confidence 4578999998874 569999999999998 999999999999988899988776 7888888777665
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.|+ +++++||.||+++++++++++||+||+|+++|||||+|+++|+|+||++|+++.++..++++||+++|++|.++|+
T Consensus 115 ~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~ 194 (375)
T 2fxu_A 115 NREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILT 194 (375)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceEEeEeECCEEeccceEEeccCHHHHHHHHHHHHH
Confidence 565 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcccCCCCC
Q 008949 331 HHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY 410 (548)
Q Consensus 331 ~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~ 410 (548)
.++ +++....+...+++||+++|+++.+.. . ...... ..... +
T Consensus 195 ~~~-------~~~~~~~~~~~~e~iK~~~~~v~~~~~-~--e~~~~~--~~~~~-----------------------~-- 237 (375)
T 2fxu_A 195 ERG-------YSFVTTAEREIVRDIKEKLCYVALDFE-N--EMATAA--SSSSL-----------------------E-- 237 (375)
T ss_dssp HHT-------CCCCSHHHHHHHHHHHHHHCCCCSSHH-H--HHHHHH--HCSTT-----------------------C--
T ss_pred hcC-------CCCCcHHHHHHHHHHHHHHHhhcccHH-H--HHHhhc--ccCcc-----------------------C--
Confidence 764 234444578899999999999975211 0 000000 00000 0
Q ss_pred CCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhcCChhHH
Q 008949 411 PPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQ 489 (548)
Q Consensus 411 ~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~D~r 489 (548)
..| .+|||+.+.++ +||.++|.||.|...+ .+..+|+++|.++|.+| +.|+|
T Consensus 238 --------~~~--~lpdg~~i~i~~erf~~~E~lf~p~~~~----------------~~~~~i~~~i~~~i~~~-~~~~~ 290 (375)
T 2fxu_A 238 --------KSY--ELPDGQVITIGNERFRCPETLFQPSFIG----------------MESAGIHETTYNSIMKC-DIDIR 290 (375)
T ss_dssp --------EEE--ECTTSCEEEESTHHHHHHHTTTCGGGGT----------------CCSCCHHHHHHHHHHTS-CHHHH
T ss_pred --------eEE--ECCCCCEEEEChhheechHhhCCCccCC----------------CCCCCHHHHHHHHHHhC-CHHHH
Confidence 001 24466667776 7999999999886543 35679999999999999 89999
Q ss_pred HhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCccccccccccc
Q 008949 490 RKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFMIKLISC 545 (548)
Q Consensus 490 ~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~~~~~ 545 (548)
++|++||+|+||+|++|||.+||++||..++|...++ +|...++|.|++|++.|-
T Consensus 291 ~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v-~v~~~~~p~~~~w~G~si 345 (375)
T 2fxu_A 291 KDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKI-KIIAPPERKYSVWIGGSI 345 (375)
T ss_dssp HHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCC-CEECCTTTTSHHHHHHHH
T ss_pred HHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeE-EEEcCCCCCccEEcchHH
Confidence 9999999999999999999999999999999998888 588899999999988764
No 7
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=3.2e-49 Score=421.99 Aligned_cols=299 Identities=18% Similarity=0.254 Sum_probs=238.4
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHH
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 251 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~ 251 (548)
++++||++|...+ ++.++|||++|.+. ||++++.||+|+|.+.|+++++++ +++++++++++..
T Consensus 58 ~~~~vG~~a~~~~---~~~~~~pi~~G~i~---------d~d~~e~i~~~~~~~~L~~~~~~~----~vvit~p~~~~~~ 121 (418)
T 1k8k_A 58 LDFFIGDEAIEKP---TYATKWPIRHGIVE---------DWDLMERFMEQVIFKYLRAEPEDH----YFLLTEPPLNTPE 121 (418)
T ss_dssp GCEEEGGGGTSCT---TSEEECCEETTEES---------CHHHHHHHHHHHHHTTTCCCGGGC----CEEEEECTTCCHH
T ss_pred cCeEEChHHHhcC---CCEEeccccCCEEC---------CHHHHHHHHHHHHHhccCCCCCCC----cEEEEeCCCCCHH
Confidence 4689999999874 59999999999998 999999999999987899888766 7888877766555
Q ss_pred HHH-HHHHHHHhcCCCeeeeehhhHHHHhh---------cCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHH
Q 008949 252 IKE-MLSIVLRDLRFASAVVHQEGLAAVFG---------NGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDI 321 (548)
Q Consensus 252 ~r~-l~e~lfe~~~~~~v~~~~e~lla~y~---------~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~i 321 (548)
.|+ +.+++||.+|+++++++.+++||+|+ .|. +|||||+|+++|+|+||++|+++.++..++++||+++
T Consensus 122 ~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~l 200 (418)
T 1k8k_A 122 NREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDI 200 (418)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHH
Confidence 554 99999999999999999999999999 566 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCC-CcceeeeeecCCCCCcc
Q 008949 322 SRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPPMGLF 400 (548)
Q Consensus 322 t~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~~~~~aP~~lf 400 (548)
|++|.++|..++. ++....+...++++|+++|+++.+... ....+.. .+.. ...+.+. .+
T Consensus 201 t~~l~~~l~~~~~-------~~~~~~~~~~~e~iK~~~~~v~~~~~~---e~~~~~~-~~~~~~~~~~lp------d~-- 261 (418)
T 1k8k_A 201 TYFIQQLLRDREV-------GIPPEQSLETAKAVKERYSYVCPDLVK---EFNKYDT-DGSKWIKQYTGI------NA-- 261 (418)
T ss_dssp HHHHHHHHHTTCC-------CCCGGGHHHHHHHHHHHHCCCCSCHHH---HHHHHHH-SGGGTCEEEEEE------CT--
T ss_pred HHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHhhchhcccHHH---HHHhhcc-cccccceeEECC------CC--
Confidence 9999999987642 233346789999999999999753110 0000000 0000 0001110 00
Q ss_pred CCcccCCCCCCCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccc-CCCHHHHHHH
Q 008949 401 YPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEE-KIGLAEAVTS 478 (548)
Q Consensus 401 ~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~-~~gL~eaI~~ 478 (548)
.....+.+.++ +||.++|.||.|...+ .+ ..+|+++|.+
T Consensus 262 -----------------------~~~~~~~i~l~~erf~~~E~lF~P~~~~----------------~~~~~~i~~~i~~ 302 (418)
T 1k8k_A 262 -----------------------ISKKEFSIDVGYERFLGPEIFFHPEFAN----------------PDFTQPISEVVDE 302 (418)
T ss_dssp -----------------------TTCCEEEEEECTHHHHHHHTTTCGGGTC----------------TTCCCCHHHHHHH
T ss_pred -----------------------CCCcccEEEeChHHhhCcHhhCCCccCC----------------CCCCCCHHHHHHH
Confidence 00011244555 7899999999886543 22 3699999999
Q ss_pred HHhhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHhhhC----------------CCCCccceEEeCCCcccccccc
Q 008949 479 SILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI----------------PSNEAIDMVEVSSHLFFFMIKL 542 (548)
Q Consensus 479 SI~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~----------------p~~~~v~~V~~~~~R~~~~~~~ 542 (548)
+|.+| +.|+|+++++||+|+||+|++|||.+||++||..++ |..+++ +|..+++|+|++|++
T Consensus 303 si~~~-~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v-~v~~~~~~~~~~w~G 380 (418)
T 1k8k_A 303 VIQNC-PIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDV-QVITHHMQRYAVWFG 380 (418)
T ss_dssp HHHHS-CGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCC-CEECCTTCTTHHHHH
T ss_pred HHHcC-CHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeE-EEeCCCccccceeHh
Confidence 99999 899999999999999999999999999999999886 667778 588999999999998
Q ss_pred ccccC
Q 008949 543 ISCFG 547 (548)
Q Consensus 543 ~~~~~ 547 (548)
.|-++
T Consensus 381 gsila 385 (418)
T 1k8k_A 381 GSMLA 385 (418)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77543
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=99.94 E-value=2.3e-25 Score=231.22 Aligned_cols=267 Identities=16% Similarity=0.189 Sum_probs=188.0
Q ss_pred ceEEccccccCCCC--CCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCC-CCCCCccceEEE-ccCCCC
Q 008949 173 EFICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIP-RSERNLYSAILV-LPESFD 248 (548)
Q Consensus 173 ~~~vG~eAl~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~-~~d~~~~~~VLv-i~~~~~ 248 (548)
.+++|++|.+.... ....+.+|+++|.+. +|+.++.+|.+++.+..... .... .++| +|..|+
T Consensus 41 ~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~---------~~~~~~~i~~~~l~~~~~~~~~~~~----~~vitvP~~~~ 107 (344)
T 1jce_A 41 ILKVGLEAKNMIGKTPATIKAIRPMRDGVIA---------DYTVALVMLRYFINKAKGGMNLFKP----RVVIGVPIGIT 107 (344)
T ss_dssp EEEESHHHHTTTTCCCTTEEEECCEETTEES---------SHHHHHHHHHHHHHHHHTSCCSCCC----EEEEEECTTCC
T ss_pred EEEEcHHHHHhcccCCCCeEEEecCCCCeeC---------ChHHHHHHHHHHHHHHhhccccCCC----eEEEEECCCCC
Confidence 35688888765322 356778999999987 99999999999995432322 2222 4555 566677
Q ss_pred hHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHH
Q 008949 249 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR 323 (548)
Q Consensus 249 ~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~ 323 (548)
..+.+.+.+ +++.+|++.+.++.+|+||++++|. .+.+|||+|+++|+|+++..|.++. ...+++||+++|+
T Consensus 108 ~~~r~~~~~-a~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~~--~~~~~lGG~~id~ 184 (344)
T 1jce_A 108 DVERRAILD-AGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVT--WESIRIAGDEMDE 184 (344)
T ss_dssp HHHHHHHHH-HHHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHHHHH
T ss_pred HHHHHHHHH-HHHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEEe--eCCCCccChhHHH
Confidence 766544666 6799999999999999999999997 5789999999999999999998774 4678999999999
Q ss_pred HHHHHHHhcCCCCCcccccccccccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCc
Q 008949 324 CLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 403 (548)
Q Consensus 324 ~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~ 403 (548)
.|.+.+..+. .+ ..+...+|++|+++|+........ ..++.+....
T Consensus 185 ~l~~~l~~~~--------~~--~~~~~~ae~~K~~l~~~~~~~~~~--------------~~~~~~~~~~---------- 230 (344)
T 1jce_A 185 AIVQYVRETY--------RV--AIGERTAERVKIEIGNVFPSKEND--------------ELETTVSGID---------- 230 (344)
T ss_dssp HHHHHHHHHH--------CE--ECCHHHHHHHHHHHCBCSCCHHHH--------------HCEEEEEEEE----------
T ss_pred HHHHHHHHHh--------Cc--ccCHHHHHHHHHHHhccCccccCC--------------cceEEEeccc----------
Confidence 9998886541 11 234678999999999875421000 0001110000
Q ss_pred ccCCCCCCCCCCCCCCCccccCCCCc--ccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHH
Q 008949 404 LLVPDVYPPPPRSWFNDYEDMLEDTW--HTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 480 (548)
Q Consensus 404 i~~~e~~~~p~~~~~~~~ed~~~d~~--~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI 480 (548)
+. +|. .+.++ +++. .+|.+ ....+.+.|.++|
T Consensus 231 ~~---------------------~g~~~~~~i~~~~~~---~~~~~---------------------~~~~i~~~i~~~l 265 (344)
T 1jce_A 231 LS---------------------TGLPRKLTLKGGEVR---EALRS---------------------VVVAIVESVRTTL 265 (344)
T ss_dssp TT---------------------TTEEEEEEEEHHHHH---HHTHH---------------------HHHHHHHHHHHHH
T ss_pred cC---------------------CCCceeEEEeHHHHH---HHHHH---------------------HHHHHHHHHHHHH
Confidence 00 000 00011 1110 12221 1236889999999
Q ss_pred hhcCChhHHHhhh-cCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCcccccccccc
Q 008949 481 LSTGRIDLQRKLF-CSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFMIKLIS 544 (548)
Q Consensus 481 ~~c~~~D~r~~L~-~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~~~~ 544 (548)
.+| +.+++++++ ++|+|+||+|++|||.++|++++.. .|.+..+..+++|.+++
T Consensus 266 ~~~-~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~---------~v~~~~~p~~ava~Gaa 320 (344)
T 1jce_A 266 EKT-PPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGI---------SVIRSEEPLTAVAKGAG 320 (344)
T ss_dssp HTS-CHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSS---------CEEECSSTTTHHHHHHH
T ss_pred HhC-CchhccchhhCcEEEECccccchHHHHHHHHHHCC---------CccccCChHHHHHHHHH
Confidence 999 788888888 7999999999999999999999951 25567788999997654
No 9
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.63 E-value=1.2e-15 Score=152.59 Aligned_cols=213 Identities=16% Similarity=0.131 Sum_probs=152.8
Q ss_pred EecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHHHHHHHHHHHHhcCCCeeee
Q 008949 191 IHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVV 270 (548)
Q Consensus 191 l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~ 270 (548)
-..|+++|.+. ||+.++.+|++++.........+.. .++++.+.......++.++.+++.+|++...+
T Consensus 58 ~~~~l~~g~i~---------d~~~~~~~l~~~~~~~~~~~~~~~~---~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i 125 (272)
T 3h1q_A 58 WASVVKDGLVV---------DYIGAIQIVRELKAKVERLLGSELF---QAATAIPPGTVGRNAEACGHVVAGAGLELVTL 125 (272)
T ss_dssp ECCCCBTTBCT---------THHHHHHHHHHHHHHHHHHSSSCCC---EEEEECCSCC---CTTHHHHHHHHTTCEEEEE
T ss_pred cccccCCCEEE---------cHHHHHHHHHHHHHHHHHhcCCccC---eEEEEcCCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 34688999988 9999999999998532221111121 34444333322333457777899999999999
Q ss_pred ehhhHHHHhhcCCceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccHH
Q 008949 271 HQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLL 350 (548)
Q Consensus 271 ~~e~lla~y~~G~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~ 350 (548)
+.++.|+++++|..+++|||+|++.|.++++.+|.++. ...+++||.++|+.+.+.+. .+..
T Consensus 126 ~~e~~A~a~~~~~~~~~viDiGggst~~~~~~~g~~~~--~~~~~~Gg~~~~~~l~~~l~----------------~~~~ 187 (272)
T 3h1q_A 126 VDEPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITA--TFDEPTGGTHLSLVLAGSYK----------------IPFE 187 (272)
T ss_dssp ECHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEEEE--ECCBSCCHHHHHHHHHHHHT----------------CCHH
T ss_pred ccHHHHHHHHHcCCCEEEEEECCCcEEEEEEECCEEEE--EecCCCcHHHHHHHHHHHhC----------------CCHH
Confidence 99999999999999999999999999999999999884 36799999999999987763 1246
Q ss_pred HHHHHHHHceeccCCccchhhhhccccCCCCCCCcceeeeeecCCCCCccCCcccCCCCCCCCCCCCCCCccccCCCCcc
Q 008949 351 MLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWH 430 (548)
Q Consensus 351 l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~ 430 (548)
.++++|+++|.-. .+.+ ++
T Consensus 188 ~ae~~k~~~~~~~------------------------~~~~------------~~------------------------- 206 (272)
T 3h1q_A 188 EAETIKKDFSRHR------------------------EIMR------------VV------------------------- 206 (272)
T ss_dssp HHHHHHHSSTTHH------------------------HHHH------------HH-------------------------
T ss_pred HHHHHHHhcCCHH------------------------HHHH------------HH-------------------------
Confidence 7899998765100 0000 00
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCHHHHHHHHHhhcCChhHHHhhhcCeEEecCCCCcCChHH
Q 008949 431 TDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIP 510 (548)
Q Consensus 431 ~~~~eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~ 510 (548)
. .....+.+.|.+++.++ + ...+|+|+||+|++|||.+
T Consensus 207 --------------~---------------------~~~~~i~~~i~~~l~~~-~------~~~~ivL~GG~a~~~~l~~ 244 (272)
T 3h1q_A 207 --------------R---------------------PVIEKMALIVKEVIKNY-D------QTLPVYVVGGTAYLTGFSE 244 (272)
T ss_dssp --------------H---------------------HHHHHHHHHHHHHTTTS-C------SSCCEEEESGGGGSTTHHH
T ss_pred --------------H---------------------HHHHHHHHHHHHHHHhc-C------CCCEEEEECCccchhhHHH
Confidence 0 00124667777888877 4 2359999999999999999
Q ss_pred HHHHHHhhhCCCCCccceEEeCCCccccccccccc
Q 008949 511 AVEERVLHAIPSNEAIDMVEVSSHLFFFMIKLISC 545 (548)
Q Consensus 511 RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~~~~~ 545 (548)
+|++++.. .|..+.+-.++++.+++-
T Consensus 245 ~l~~~l~~---------~v~~~~~p~~a~a~Gaal 270 (272)
T 3h1q_A 245 EFSRFLGK---------EVQVPIHPLLVTPLGIAL 270 (272)
T ss_dssp HHHHHHSS---------CCBCCSSGGGHHHHHHHT
T ss_pred HHHHHhCC---------CccccCChHHHHHHHHHh
Confidence 99999842 134556777888776653
No 10
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.52 E-value=5.6e-14 Score=153.45 Aligned_cols=220 Identities=15% Similarity=0.137 Sum_probs=135.3
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCc-----eEEEEEeCCCcEEEEEee--CCee-ecCC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVICVE--DGVA-LPNT 310 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~-----tglVVDiG~~~T~V~pV~--dG~~-l~~s 310 (548)
.|+-+|..|+..+.+.+.+ +++..|++.+.++.+|.||++++|.. +.+|||+|+++|.|+.+. +|.. +..+
T Consensus 112 ~VitvPa~~~~~qr~a~~~-a~~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~ 190 (509)
T 2v7y_A 112 AVITVPAYFNDAQRQATKD-AGRIAGLEVERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKAT 190 (509)
T ss_dssp EEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHH-HHHHcCCCeEEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEe
Confidence 4555677788777555655 56899999999999999999999873 689999999999999776 4643 3333
Q ss_pred ceeecccHHHHHHHHHHHHHhcCCCCCcccccccc-----cccHHHHHHHHHHceeccCCccchhhhhccccCCCCCCCc
Q 008949 311 EKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK-----AMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSH 385 (548)
Q Consensus 311 ~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~-----~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~p~~~~ 385 (548)
....++||+++|+.|.+++...-.- .+ ..++.. ..-...+|++|+.+|......+.... .+. .+.+.
T Consensus 191 ~g~~~lGG~d~d~~l~~~l~~~~~~-~~-~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~---~~~--~~~G~- 262 (509)
T 2v7y_A 191 AGDNHLGGDDFDQVIIDYLVNQFKQ-EH-GIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPF---ISA--NENGP- 262 (509)
T ss_dssp EEETTCSHHHHHHHHHHHHHHHHHH-HH-SCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEE---EEE--ETTEE-
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHH-Hh-CCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEec---ccc--CCCCC-
Confidence 4457899999999999776542000 00 011211 01246788999988754321110000 000 00000
Q ss_pred ceeeeeecCCCCCccCCcccCCCCCCCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCC
Q 008949 386 KTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKP 464 (548)
Q Consensus 386 k~~~~~~~~aP~~lf~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~~~~~~ 464 (548)
..+ .+.++ ++| |.+|.+.
T Consensus 263 -~~~----------------------------------------~~~itr~~f---e~l~~~~----------------- 281 (509)
T 2v7y_A 263 -LHL----------------------------------------EMTLTRAKF---EELSAHL----------------- 281 (509)
T ss_dssp -EEE----------------------------------------EEEEEHHHH---HHHTHHH-----------------
T ss_pred -eeE----------------------------------------EEEEEHHHH---HHHHHHH-----------------
Confidence 000 00000 000 0111111
Q ss_pred CcccCCCHHHHHHHHHhhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCcccccccccc
Q 008949 465 KKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFMIKLIS 544 (548)
Q Consensus 465 ~~~~~~gL~eaI~~SI~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~~~~~~ 544 (548)
...+.+.|.++|..| . +.....++|+|+||+|.+||+.++|++++... +....+..+++|++++
T Consensus 282 ----~~~i~~~i~~~L~~a-~--~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~---------~~~~~~p~~aVa~Gaa 345 (509)
T 2v7y_A 282 ----VERTMGPVRQALQDA-G--LTPADIDKVILVGGSTRIPAVQEAIKRELGKE---------PHKGVNPDEVVAIGAA 345 (509)
T ss_dssp ----HHTTHHHHHHHHHHH-T--CCGGGCSEEEEESGGGGCHHHHHHHHHHHSSC---------CBCCSCTTTHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHc-C--CChhHCcEEEEECCcccChHHHHHHHHHhCCC---------cCcCCCchhhhHhhHH
Confidence 124667888888887 3 34566799999999999999999999998521 2234455677776554
No 11
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.50 E-value=4.7e-14 Score=147.95 Aligned_cols=223 Identities=13% Similarity=0.071 Sum_probs=138.5
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCc------eEEEEEeCCCcEEEEEeeCC------ee
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVICVEDG------VA 306 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~------tglVVDiG~~~T~V~pV~dG------~~ 306 (548)
.|+-+|..|+..+.+.+.+ +++..|++.+.++.+|+||++++|.. +.+|||+|+++|+++.+..| ..
T Consensus 138 ~vitvP~~~~~~~r~~~~~-a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~ 216 (383)
T 1dkg_D 138 AVITVPAYFNDAQRQATKD-AGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTF 216 (383)
T ss_dssp EEECBCTTCCHHHHHHHHH-HHHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCC
T ss_pred EEEEECCCCCHHHHHHHHH-HHHHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeE
Confidence 4555677777776544655 46899999999999999999988763 57999999999999987643 32
Q ss_pred e-cCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccc-----cccHHHHHHHHHHceeccCCccchhhhhccccCCC
Q 008949 307 L-PNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK-----AMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGM 380 (548)
Q Consensus 307 l-~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~-----~~d~~l~e~iKe~~c~v~~~~~~~~~~~~~~~~~~ 380 (548)
. ..+....++||+++|+.|.+++..+... .+ ..++.. ..-+..+|++|+++|......+.... .+. .
T Consensus 217 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~-~~-~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~---~~~--~ 289 (383)
T 1dkg_D 217 EVLATNGDTHLGGEDFDSRLINYLVEEFKK-DQ-GIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPY---ITA--D 289 (383)
T ss_dssp EEEEEEEESSCSHHHHHHHHHHHHHHHHHH-HH-CCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEE---EEE--E
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHH-Hh-CCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEec---ccc--c
Confidence 1 1123457999999999999877543100 00 011110 01246789999998765321110000 000 0
Q ss_pred CCCCcceeeeeecCCCCCccCCcccCCCCCCCCCCCCCCCccccCCCCcccccC-CCCCCCCCCCCCCCCCCCCCCCCCc
Q 008949 381 PPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFYPGINVGLPMWESYPV 459 (548)
Q Consensus 381 p~~~~k~~~~~~~~aP~~lf~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-eR~~~~E~lf~~~~~~~~~~~~~~~ 459 (548)
+.+. ..+ .+.++ +++ +.+|.+
T Consensus 290 ~~G~--~~~----------------------------------------~~~it~~~~---~~~~~~------------- 311 (383)
T 1dkg_D 290 ATGP--KHM----------------------------------------NIKVTRAKL---ESLVED------------- 311 (383)
T ss_dssp TTEE--EEE----------------------------------------EEEEEHHHH---HHHSHH-------------
T ss_pred CCCC--eeE----------------------------------------EEEEeHHHH---HHHHHH-------------
Confidence 0000 000 00000 000 011111
Q ss_pred cCCCCCcccCCCHHHHHHHHHhhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHHhhhCCCCCccceEEeCCCccccc
Q 008949 460 LTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFM 539 (548)
Q Consensus 460 ~~~~~~~~~~~gL~eaI~~SI~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~ 539 (548)
....+.+.|.++|.+| + +.....++|+|+||+|++||+.++|++++.. .|....+..+++
T Consensus 312 --------~~~~i~~~i~~~l~~~-~--~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~---------~v~~~~~p~~av 371 (383)
T 1dkg_D 312 --------LVNRSIELLKVALQDA-G--LSVSDIDDVILVGGQTRMPMVQKKVAEFFGK---------EPRKDVNPDEAV 371 (383)
T ss_dssp --------HHHHHHHHHHHHHHTT-T--CCTTTCCEEEEESGGGGSHHHHHHHHHHHSS---------CCBCSSCTTTHH
T ss_pred --------HHHHHHHHHHHHHHHc-C--CCHhhCCEEEEecCccccHHHHHHHHHHhCC---------CCCCCcChHHHH
Confidence 1125778888889888 3 3445679999999999999999999999952 134566778999
Q ss_pred cccccccC
Q 008949 540 IKLISCFG 547 (548)
Q Consensus 540 ~~~~~~~~ 547 (548)
|++++-.+
T Consensus 372 a~Gaa~~a 379 (383)
T 1dkg_D 372 AIGAAVQG 379 (383)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 98766443
No 12
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.46 E-value=2.3e-14 Score=150.63 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=69.3
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCce------EEEEEeCCCcEEEEEee--CCeeecC-
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLST------ACVVNMGAQVTSVICVE--DGVALPN- 309 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~t------glVVDiG~~~T~V~pV~--dG~~l~~- 309 (548)
.|+-+|..|+..+.+.+.+ +++..|++.+.++.++.||++++|... .+|||+|+++|.++.+. +|.....
T Consensus 156 ~vitvP~~~~~~~r~~~~~-a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~ 234 (394)
T 3qfu_A 156 AVVTVPAYFNDAQRQATKD-AGTIAGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQA 234 (394)
T ss_dssp EEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHH-HHHHcCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEE
Confidence 4555777888776544544 458999999999999999999998643 49999999999887774 5543222
Q ss_pred CceeecccHHHHHHHHHHHHH
Q 008949 310 TEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 310 s~~~l~~GG~~it~~L~~lL~ 330 (548)
.....++||+++|+.|.+.+.
T Consensus 235 ~~~~~~lGG~~~d~~l~~~l~ 255 (394)
T 3qfu_A 235 TSGDTHLGGEDFDYKIVRQLI 255 (394)
T ss_dssp EEEETTCSHHHHHHHHHHHHH
T ss_pred EcCCCCCChHHHHHHHHHHHH
Confidence 233479999999999987764
No 13
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.33 E-value=2.4e-13 Score=143.61 Aligned_cols=91 Identities=19% Similarity=0.293 Sum_probs=70.4
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCce---------EEEEEeCCCcEEEEEee--CCee-
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLST---------ACVVNMGAQVTSVICVE--DGVA- 306 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~t---------glVVDiG~~~T~V~pV~--dG~~- 306 (548)
.|+-+|..|+..+.+.+.+ +++..|++.+.++.+|.||++++|... .+|||+|+++|.++.+. +|..
T Consensus 161 ~vitvPa~~~~~~r~~~~~-a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~ 239 (404)
T 3i33_A 161 AVITVPAYFNDSQRQATKD-AGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFE 239 (404)
T ss_dssp EEEEECTTCCHHHHHHHHH-HHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCHHHHHHHHH-HHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEE
Confidence 4555788888777544444 578999999999999999999987533 49999999999998774 5443
Q ss_pred ecCCceeecccHHHHHHHHHHHHH
Q 008949 307 LPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 307 l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
+........+||+++++.|.+.+.
T Consensus 240 v~~~~~~~~lGG~~~d~~l~~~l~ 263 (404)
T 3i33_A 240 VKSTAGDTHLGGEDFDNRMVSHLA 263 (404)
T ss_dssp EEEEEEETTCSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222334589999999999987763
No 14
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.06 E-value=1.3e-09 Score=113.76 Aligned_cols=89 Identities=20% Similarity=0.346 Sum_probs=70.7
Q ss_pred HHHHHhcCCCeeeeehhhHHHHhhcCC------ce-EEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHH
Q 008949 257 SIVLRDLRFASAVVHQEGLAAVFGNGL------ST-ACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 329 (548)
Q Consensus 257 e~lfe~~~~~~v~~~~e~lla~y~~G~------~t-glVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL 329 (548)
.-+++..|+.-..+..+++|+++++|. .. .+|||+|+++|.|+.+.+|.++. ...+++||+++|+.+.+.+
T Consensus 157 ~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~--~~~~~~GG~~i~~~i~~~~ 234 (377)
T 2ych_A 157 LEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA--VRVLTLSGKDFTEAIARSF 234 (377)
T ss_dssp HHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHHHHHHHHHHT
T ss_pred HHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEE--EEeeechHHHHHHHHHHHh
Confidence 345688999999999999999888752 33 59999999999999999999875 4678999999999987621
Q ss_pred HhcCCCCCcccccccccccHHHHHHHHHHceecc
Q 008949 330 RHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIK 363 (548)
Q Consensus 330 ~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~v~ 363 (548)
+ .+...+|++|+++++..
T Consensus 235 ---~-------------~~~~~aE~~K~~~~~~~ 252 (377)
T 2ych_A 235 ---N-------------LDLLAAEEVKRTYGMAT 252 (377)
T ss_dssp ---T-------------CCHHHHHHHHHHTC---
T ss_pred ---C-------------CCHHHHHHHHhhccccc
Confidence 1 23567999999887654
No 15
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=98.89 E-value=4.9e-09 Score=115.48 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=72.4
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC-------ceEEEEEeCCCcEEEEEee--CCee-ec
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGVA-LP 308 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~-------~tglVVDiG~~~T~V~pV~--dG~~-l~ 308 (548)
.|+-+|..|+..+.+.+.+ +++..|+..+.++.+|.||++++|. .+.+|+|+|+++|.|+.+. +|.. +.
T Consensus 142 ~VitVPa~f~~~qr~a~~~-A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~ 220 (554)
T 1yuw_A 142 AVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVK 220 (554)
T ss_dssp EEEEECTTCCHHHHHHHHH-HHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEE
T ss_pred EEEEECCCCCHHHHHHHHH-HHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEE
Confidence 5666788888877544444 6789999999999999999998875 3579999999999999887 7754 23
Q ss_pred CCceeecccHHHHHHHHHHHHH
Q 008949 309 NTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 309 ~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.+.....+||+++++.|.+.+.
T Consensus 221 a~~g~~~lGG~d~d~~l~~~l~ 242 (554)
T 1yuw_A 221 STAGDTHLGGEDFDNRMVNHFI 242 (554)
T ss_dssp EEEEETTCSHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 3345579999999999987664
No 16
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=98.78 E-value=2e-08 Score=111.80 Aligned_cols=92 Identities=21% Similarity=0.267 Sum_probs=70.7
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCc------eEEEEEeCCCcEEEEEee------CCee
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS------TACVVNMGAQVTSVICVE------DGVA 306 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~------tglVVDiG~~~T~V~pV~------dG~~ 306 (548)
.|+-+|..|+..+.+.+. -+.+..|+..+.++.+|.||++++|.. +.+|+|+|+++|.|+.+. +|..
T Consensus 138 ~VitVPa~f~d~qr~a~~-~A~~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~ 216 (605)
T 2kho_A 138 AVITVPAYFNDAQRQATK-DAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTF 216 (605)
T ss_dssp EEEEECTTCCHHHHHHHH-HHHHTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEE
T ss_pred EEEEECCCCCHHHHHHHH-HHHHHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeE
Confidence 566688888877644344 456889999999999999999988753 369999999999999886 4543
Q ss_pred -ecCCceeecccHHHHHHHHHHHHHh
Q 008949 307 -LPNTEKTLPFGGEDISRCLLWTQRH 331 (548)
Q Consensus 307 -l~~s~~~l~~GG~~it~~L~~lL~~ 331 (548)
+..+.....+||+++++.|.+.+..
T Consensus 217 ~v~a~~gd~~lGG~d~D~~l~~~l~~ 242 (605)
T 2kho_A 217 EVLATNGDTHLGGEDFDSRLINYLVE 242 (605)
T ss_dssp EEEEEEEESSCSGGGTHHHHHHHHHH
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHH
Confidence 2222345689999999999876643
No 17
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=98.78 E-value=3.6e-08 Score=110.93 Aligned_cols=91 Identities=14% Similarity=0.194 Sum_probs=71.2
Q ss_pred eEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC------------ceEEEEEeCCCcEEEEEee--CC
Q 008949 239 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------------STACVVNMGAQVTSVICVE--DG 304 (548)
Q Consensus 239 ~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~------------~tglVVDiG~~~T~V~pV~--dG 304 (548)
.|+-+|..|+..+.+.+.+ +.+..|+..+.++.+|.||++++|. .+.+|+|+|+++|.|+.+. +|
T Consensus 141 ~VITVPa~f~~~qR~a~~~-Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g 219 (675)
T 3d2f_A 141 VCIAVPPWYTEEQRYNIAD-AARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKG 219 (675)
T ss_dssp EEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETT
T ss_pred EEEEECCCCCHHHHHHHHH-HHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCC
Confidence 5666788888877544444 6688999999999999999987653 2479999999999999886 67
Q ss_pred ee-ecCCceeecccHHHHHHHHHHHHH
Q 008949 305 VA-LPNTEKTLPFGGEDISRCLLWTQR 330 (548)
Q Consensus 305 ~~-l~~s~~~l~~GG~~it~~L~~lL~ 330 (548)
.. +..+.....+||+++++.|.+.+.
T Consensus 220 ~~~V~a~~gd~~lGG~d~D~~l~~~l~ 246 (675)
T 3d2f_A 220 QLKVLGTACDKHFGGRDFDLAITEHFA 246 (675)
T ss_dssp EEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCccHHHHHHHHHHHHH
Confidence 64 333334578999999999997764
No 18
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=98.75 E-value=2.3e-08 Score=106.30 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=71.9
Q ss_pred HHHHhcCCCeeeeehhhHHHHhhcCC-----ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHHhc
Q 008949 258 IVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHH 332 (548)
Q Consensus 258 ~lfe~~~~~~v~~~~e~lla~y~~G~-----~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~~~ 332 (548)
-+++..|+.-..++.+|+||+++++. ...+|||+|+++|.|+.+.+|.+.. ...+++||+++|+.+...+.
T Consensus 175 ~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~--~~~i~~GG~~it~dIa~~l~-- 250 (419)
T 4a2a_A 175 NFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIK--ISYVPVGMKHVIKDVSAVLD-- 250 (419)
T ss_dssp HHHHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEE--EEEESCCHHHHHHHHHHHHT--
T ss_pred HHHHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEE--EEecccHHHHHHHHHHHHHC--
Confidence 35688999999999999999998875 2579999999999999999999875 35789999999999986542
Q ss_pred CCCCCcccccccccccHHHHHHHHHHcee
Q 008949 333 QTWPQIRTDILTKAMDLLMLNRIKESYCE 361 (548)
Q Consensus 333 ~~~p~~~~~~l~~~~d~~l~e~iKe~~c~ 361 (548)
.....+|++|.++..
T Consensus 251 --------------~~~~~AE~iK~~~g~ 265 (419)
T 4a2a_A 251 --------------TSFEESERLIITHGN 265 (419)
T ss_dssp --------------CCHHHHHHHHHHHCC
T ss_pred --------------CCHHHHHHHHHHhcc
Confidence 234789999988753
No 19
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=98.75 E-value=1.2e-08 Score=107.73 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCCc--------eE
Q 008949 215 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS--------TA 286 (548)
Q Consensus 215 le~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~~--------tg 286 (548)
++.+++++- ..++.+.. ..|+-+|..|+..+.+ .+.-+.+..|+..+.++.+|.||+++++.. +.
T Consensus 135 L~~l~~~a~-~~~~~~~~-----~~vitvPa~~~~~~r~-~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~v 207 (409)
T 4gni_A 135 LRRLVGAAS-EYLGKKVT-----SAVITIPTNFTEKQKA-ALIAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKII 207 (409)
T ss_dssp HHHHHHHHH-HHHTSCCC-----EEEEEECTTCCHHHHH-HHHHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEE
T ss_pred HHHHHHHHH-HHhCCCCC-----eEEEEECCCCCHHHHH-HHHHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEE
Confidence 455555543 44543322 2566688899877644 445556788999999999999999998864 47
Q ss_pred EEEEeCCCcEEEEEe--eCCeee-cCCceeecccHHHHHHHHHHHHHh
Q 008949 287 CVVNMGAQVTSVICV--EDGVAL-PNTEKTLPFGGEDISRCLLWTQRH 331 (548)
Q Consensus 287 lVVDiG~~~T~V~pV--~dG~~l-~~s~~~l~~GG~~it~~L~~lL~~ 331 (548)
+|||+|+++|.++-+ .+|..- ........+||+++|+.|.+.+..
T Consensus 208 lv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~ 255 (409)
T 4gni_A 208 VVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSK 255 (409)
T ss_dssp EEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999875 344321 112234799999999999887753
No 20
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=98.57 E-value=7e-08 Score=99.98 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=95.7
Q ss_pred cceEEccccccCCCCCCceEecceecCEEeecCCCCccccHHHHHHHHHHHHhhhcC-CCCCCCCccceE--EEccCCCC
Q 008949 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLH-IPRSERNLYSAI--LVLPESFD 248 (548)
Q Consensus 172 ~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~~~le~i~~~~l~~~L~-i~~~d~~~~~~V--Lvi~~~~~ 248 (548)
+.|+||++|. +|++.|.+. + +..+.++.+++.+... -.... ...| +-+|..+.
T Consensus 78 ~~~~vG~~A~-----------~~l~~~~~~---------~-~~~~~ll~~~l~~~~~~~~~~~---~~vvL~i~vP~~~~ 133 (346)
T 2fsj_A 78 GKYASGNNIR-----------VPQGDGRLA---------S-KEAFPLIAAALWESGIHNDGSP---VDLVIGSGTPLGTF 133 (346)
T ss_dssp GGGCCSSCCB-----------CCSSTTCTT---------S-TTTHHHHHHHHHHHCCCC---C---EEEEEEEEECGGGH
T ss_pred cEEEEcccee-----------cccCCCccc---------C-hhHHHHHHHHHHHhhhccCCCc---eEEEEcccCCHHHH
Confidence 5788999988 678888776 5 5667778888854321 11111 2234 33565555
Q ss_pred hHHHHHHHHHHHHh-------------cCCCeeeeehhhHHHHhhc--CC------ceEEEEEeCCCcEEEEEee--CCe
Q 008949 249 NREIKEMLSIVLRD-------------LRFASAVVHQEGLAAVFGN--GL------STACVVNMGAQVTSVICVE--DGV 305 (548)
Q Consensus 249 ~~~~r~l~e~lfe~-------------~~~~~v~~~~e~lla~y~~--G~------~tglVVDiG~~~T~V~pV~--dG~ 305 (548)
..+.+.+.+.+... +++..+.+++||.+|++++ +. .+-+|||+|+++|.|+-+. +|.
T Consensus 134 ~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~ 213 (346)
T 2fsj_A 134 DLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDME 213 (346)
T ss_dssp HHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTE
T ss_pred HHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCE
Confidence 55544455554332 2357799999999999985 31 3349999999999999998 887
Q ss_pred eecCCceeecccHHHHHHHHHHHHHhc
Q 008949 306 ALPNTEKTLPFGGEDISRCLLWTQRHH 332 (548)
Q Consensus 306 ~l~~s~~~l~~GG~~it~~L~~lL~~~ 332 (548)
.+......+++||+++++.+.+.++++
T Consensus 214 ~v~~~s~~~~lGg~~i~~~I~~~i~~~ 240 (346)
T 2fsj_A 214 PVVELSFSLQIGVGDAISALSRKIAKE 240 (346)
T ss_dssp ECGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred EEeecCCCcchhHHHHHHHHHHHHHHH
Confidence 666556888999999999999877654
No 21
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=98.56 E-value=3.5e-07 Score=101.68 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=76.9
Q ss_pred HHHHHHHHhhhcCCCCCCCCccceEEEccCCCChHHHHHHHHHHHHhcCCCeeeeehhhHHHHhhcCC------ceEEEE
Q 008949 216 YAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVV 289 (548)
Q Consensus 216 e~i~~~~l~~~L~i~~~d~~~~~~VLvi~~~~~~~~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~G~------~tglVV 289 (548)
..+.+++ ...|+.+.. ..|+-+|..|+..+. +.+.-+.+..|+..+.++.+|.||++++|. .+-+|+
T Consensus 121 ~~lk~~a-e~~lg~~v~-----~~VITVPa~f~~~qr-~a~~~Aa~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~ 193 (605)
T 4b9q_A 121 KKMKKTA-EDYLGEPVT-----EAVITVPAYFNDAQR-QATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVY 193 (605)
T ss_dssp HHHHHHH-HHHHTSCCC-----EEEEEECTTCCHHHH-HHHHHHHHHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEE
T ss_pred HHHHHHH-HHHhCCCCC-----eEEEEECCCCCHHHH-HHHHHHHHHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEE
Confidence 4444444 245654332 256668888987764 455556788999999999999999988875 245999
Q ss_pred EeCCCcEEEEEeeCCe------e-ecCCceeecccHHHHHHHHHHHHHh
Q 008949 290 NMGAQVTSVICVEDGV------A-LPNTEKTLPFGGEDISRCLLWTQRH 331 (548)
Q Consensus 290 DiG~~~T~V~pV~dG~------~-l~~s~~~l~~GG~~it~~L~~lL~~ 331 (548)
|+|++++.|+.+.-+. . +..+.....+||+++++.|.+.+..
T Consensus 194 DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~~ 242 (605)
T 4b9q_A 194 DLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242 (605)
T ss_dssp EECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred ECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHHH
Confidence 9999999999886332 1 1122334688999999999876653
No 22
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=97.85 E-value=3.4e-05 Score=82.79 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCCeeeeehhhHHHHhhc----CCce-EEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHH
Q 008949 251 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGN----GLST-ACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (548)
Q Consensus 251 ~~r~l~e~lfe~~~~~~v~~~~e~lla~y~~----G~~t-glVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L 325 (548)
.++.+.+.+=+.++++--.=.-+++||.+|+ +..- .++||+|+++|+++-+.+|..+. ...+++||+++|..+
T Consensus 369 ~m~NI~~cVer~~gL~veV~g~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~--a~~ip~gG~~VT~DI 446 (610)
T 2d0o_A 369 QMAMIAREIEQKLNIDVQIGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDII--ATHLAGAGDMVTMII 446 (610)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEE--EEEEECSHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcceeccccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE--EEEeccchHHHHHHH
Confidence 3445555554444551000016778887776 3433 59999999999999999998775 467999999999999
Q ss_pred HHHHHhcCCCCCcccccccccccHHHHHHHHHHcee
Q 008949 326 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCE 361 (548)
Q Consensus 326 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~iKe~~c~ 361 (548)
..-|.. -|...+|+||. +..
T Consensus 447 A~~Lgt---------------~d~~~AErIK~-YG~ 466 (610)
T 2d0o_A 447 ARELGL---------------EDRYLAEEIKK-YPL 466 (610)
T ss_dssp HHHHTC---------------CCHHHHHHHHH-SCE
T ss_pred HHHhCC---------------CCHHHHHHhcc-cCc
Confidence 876632 24688999998 643
No 23
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=97.83 E-value=5.3e-05 Score=81.61 Aligned_cols=72 Identities=22% Similarity=0.225 Sum_probs=57.3
Q ss_pred hhhHHHHhhc----CCce-EEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHHhcCCCCCccccccccc
Q 008949 272 QEGLAAVFGN----GLST-ACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKA 346 (548)
Q Consensus 272 ~e~lla~y~~----G~~t-glVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~ 346 (548)
-+++||.+|+ +..- .++||+|+++|+++-+.+|..+. ...+++||+++|..+..-|..
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~--a~~ip~gG~~VT~DIA~~Lg~--------------- 454 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQIT--AVHLAGAGNMVSLLIKTELGL--------------- 454 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEE--EEEEECCHHHHHHHHHHHHTC---------------
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE--EEEeccchHHHHHHHHHHhCC---------------
Confidence 6777877776 3433 59999999999999999998775 467999999999999876632
Q ss_pred ccHHHHHHHHHHcee
Q 008949 347 MDLLMLNRIKESYCE 361 (548)
Q Consensus 347 ~d~~l~e~iKe~~c~ 361 (548)
-|...+|+||. +..
T Consensus 455 ~d~~~AErIK~-YG~ 468 (607)
T 1nbw_A 455 EDLSLAEAIKK-YPL 468 (607)
T ss_dssp SCHHHHHHHHH-SCE
T ss_pred CCHHHHHHhcc-cCc
Confidence 24688999998 643
No 24
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=97.27 E-value=0.00034 Score=72.46 Aligned_cols=68 Identities=7% Similarity=0.102 Sum_probs=59.0
Q ss_pred CCeeeeehhhHHHHhhcCC-----------ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHHhc
Q 008949 265 FASAVVHQEGLAAVFGNGL-----------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHH 332 (548)
Q Consensus 265 ~~~v~~~~e~lla~y~~G~-----------~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~~~ 332 (548)
+..|.+++|+++|+|+++. ..-+|||||+++|.++.+.+|.++......+++||..+++.+.+.+++.
T Consensus 154 I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~l~~~ 232 (355)
T 3js6_A 154 VKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSKK 232 (355)
T ss_dssp EEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHTC--
T ss_pred EEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHHHHHHHHHHHHHh
Confidence 4789999999999999863 3469999999999999999999988878899999999999999888654
No 25
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=97.16 E-value=0.0003 Score=71.56 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=58.0
Q ss_pred hcCCCeeeeehhhHHHHhhcC-----CceEEEEEeCCCcEEEEEeeCCee-ecCCceeecccHHHHHHHHHHHHHh
Q 008949 262 DLRFASAVVHQEGLAAVFGNG-----LSTACVVNMGAQVTSVICVEDGVA-LPNTEKTLPFGGEDISRCLLWTQRH 331 (548)
Q Consensus 262 ~~~~~~v~~~~e~lla~y~~G-----~~tglVVDiG~~~T~V~pV~dG~~-l~~s~~~l~~GG~~it~~L~~lL~~ 331 (548)
.++|..+.++.++++|+++.+ ....+|||+|+++|.++.+.+|.+ +..+...+++||+++++.+.+.+..
T Consensus 137 ~~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~ 212 (320)
T 2zgy_A 137 TFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSL 212 (320)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTC
T ss_pred EEEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHHHH
Confidence 456788999999999998864 235799999999999999999876 4434567899999999999988754
No 26
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=96.86 E-value=0.00097 Score=68.22 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=57.7
Q ss_pred CCeeeeehhhHHHHhhcC----CceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHHHHHHh
Q 008949 265 FASAVVHQEGLAAVFGNG----LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRH 331 (548)
Q Consensus 265 ~~~v~~~~e~lla~y~~G----~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~~lL~~ 331 (548)
+..+.+.+|+++|+|... ..+.+|||||+++|.++.+.+|.++......+++||+++++.+.+.++.
T Consensus 149 I~~v~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~l~~ 219 (329)
T 4apw_A 149 ITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTD 219 (329)
T ss_dssp EEEEEEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHTSSSS
T ss_pred EeEEEEEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHHHHHHHHHHh
Confidence 467999999999998862 2456999999999999999999998776778999999999999876654
No 27
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=88.02 E-value=1.5 Score=44.10 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=36.4
Q ss_pred CceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHHH
Q 008949 283 LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 326 (548)
Q Consensus 283 ~~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L~ 326 (548)
..+++|||||.++|.++-..+|.+.. ...+++|+-.+++.+.
T Consensus 137 ~~~~lvvDIGGGStEl~~~~~~~~~~--~~Sl~~G~v~l~e~~~ 178 (315)
T 1t6c_A 137 EGEVCVVDQGGGSTEYVFGKGYKVRE--VISLPIGIVNLTETFF 178 (315)
T ss_dssp CSEEEEEEEETTEEEEEEEETTEEEE--EEEECCCHHHHHHHHC
T ss_pred CCCEEEEEeCCCcEEEEEEeCCceee--EEEEeccHHHHHHHhc
Confidence 45799999999999999999988753 5789999999998863
No 28
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=81.72 E-value=1.5 Score=44.06 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=35.1
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHH
Q 008949 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (548)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L 325 (548)
..++|||||.++|.++-+.+|.+.. ..++++|.-.+++.+
T Consensus 131 ~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~f 170 (315)
T 3mdq_A 131 HISLAMDIGGGSVEFIIGNKNEILW--KQSFEIGGQRLIDRF 170 (315)
T ss_dssp CCEEEEEECSSCEEEEEECSSCEEE--EEEESCCHHHHHHHS
T ss_pred CCEEEEEeCCCceEEEEEECCeEee--eEEEechhhHHHHHh
Confidence 5689999999999999999987764 578999999988765
No 29
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=81.39 E-value=1.2 Score=45.19 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=23.4
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeec
Q 008949 284 STACVVNMGAQVTSVICVEDGVALP 308 (548)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~~l~ 308 (548)
.++++||||..+|.|+|+.+|.++.
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~ 151 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVA 151 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECC
T ss_pred CCEEEEEcCcchhhhhhhcCCeecc
Confidence 5799999999999999999999986
No 30
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=80.87 E-value=1.5 Score=44.64 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=33.2
Q ss_pred ceEEEEEeCCCcEEEEEeeC--Ceee--cCCceeecccHHHHHHHH
Q 008949 284 STACVVNMGAQVTSVICVED--GVAL--PNTEKTLPFGGEDISRCL 325 (548)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~d--G~~l--~~s~~~l~~GG~~it~~L 325 (548)
..++|||||.++|.++-+.+ +.+. .....++++|+..+|+.+
T Consensus 146 ~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~SlplG~v~lt~~~ 191 (343)
T 3cer_A 146 APYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSMNIGSVRMTERH 191 (343)
T ss_dssp SSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEESCCHHHHHHHT
T ss_pred CCEEEEEeCCCceEEEEeecCccCcccccceeEEEehhHHHHHHHh
Confidence 46999999999999998877 3321 113578999999999876
No 31
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=76.39 E-value=4.3 Score=43.61 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=34.2
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHH
Q 008949 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 324 (548)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~ 324 (548)
..++|||||.++|.++-+.+|.+. ...++++|.-.+++.
T Consensus 140 ~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~ 178 (508)
T 3hi0_A 140 PDGIAGDLGGGSLELIDIKDKSCG--EGITLPLGGLRLSEQ 178 (508)
T ss_dssp CEEEEEEECSSCEEEEEEETTEEC--CCEEESCCHHHHHHH
T ss_pred CCeEEEEeCCCceEEEEeeCCeee--eEEEecceEEehhhc
Confidence 468999999999999999999876 467899999988874
No 32
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=74.31 E-value=4.8 Score=43.31 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=34.6
Q ss_pred eEEEEEeCCCcEEEEEeeCCeeecCCceeecccHHHHHHHH
Q 008949 285 TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 325 (548)
Q Consensus 285 tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~~GG~~it~~L 325 (548)
.++|||||.++|.++-..+|.+.. ..++++|.-.+|+.+
T Consensus 138 ~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrlte~f 176 (513)
T 1u6z_A 138 RKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVSFAQLY 176 (513)
T ss_dssp CEEEEEECSSCEEEEEEETTEEEE--EEEESCCHHHHHHHH
T ss_pred CEEEEEECCCcEEEEEEeCCeeeE--EEEEeccHHHHHHHH
Confidence 699999999999999998888763 578999999999876
No 33
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=58.32 E-value=4.6 Score=39.13 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=43.4
Q ss_pred eeeeehhhHHHHhhcCC---ceEEEEEeCCCcEEEEEee-CCeeec-CCceeecccHHHHHHHHHHHH
Q 008949 267 SAVVHQEGLAAVFGNGL---STACVVNMGAQVTSVICVE-DGVALP-NTEKTLPFGGEDISRCLLWTQ 329 (548)
Q Consensus 267 ~v~~~~e~lla~y~~G~---~tglVVDiG~~~T~V~pV~-dG~~l~-~s~~~l~~GG~~it~~L~~lL 329 (548)
.+..+++..++++|+.. ..-.|+|+|.+.++++-+. +|.... .......-||.+..+.+.+.|
T Consensus 73 ~~~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~~~~g~~~~~~~~~~~~~g~G~f~d~~a~~l 140 (276)
T 4ehu_A 73 ADKQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKII 140 (276)
T ss_dssp CSEECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEECTTSCEEEEEEECSCSTTSHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEEEecCceEEEEeCCCcCcchhhHHHHHHHHh
Confidence 36678888988888754 3458999999999998884 554322 112345667777776666655
No 34
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=51.56 E-value=10 Score=38.62 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=25.7
Q ss_pred ceEEEEEeCCCcEEEEEeeC--CeeecCCceeecccHH
Q 008949 284 STACVVNMGAQVTSVICVED--GVALPNTEKTLPFGGE 319 (548)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~d--G~~l~~s~~~l~~GG~ 319 (548)
.+++|||+|.++|+|+-... +.+.......+++||.
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~~ 177 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYGQ 177 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETTE
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCCceEEEEECCc
Confidence 47999999999999998744 3333322467777773
No 35
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=47.36 E-value=3.2 Score=42.15 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=24.4
Q ss_pred EEEEcCCCceeeeecCCCCCCCccceeeeeecC
Q 008949 20 LVVINPGSANIRIGLAQHDTPLNIPHCIARRTS 52 (548)
Q Consensus 20 ~iVIhpGS~~lriG~Asd~~P~~ip~~iAr~~~ 52 (548)
.|-|+.|..|.|+-. ++-.-..+|++||....
T Consensus 23 ~igiDlG~~~tkv~~-~~g~~~~~PSvva~~~~ 54 (346)
T 2fsj_A 23 VVGLDVGYGDTKVIG-VDGKRIIFPSRWAVTET 54 (346)
T ss_dssp EEEEEECSSEEEEEC-GGGCEEEEESCEEEECC
T ss_pred EEEEecCCcceeEEe-cCCCEEEecceeeeccc
Confidence 589999999999974 33334468999998753
No 36
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=45.89 E-value=6.2 Score=39.64 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCChhHHHhhhcCeEEecCCCCcCChHHHHHHHH
Q 008949 472 LAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERV 516 (548)
Q Consensus 472 L~eaI~~SI~~c~~~D~r~~L~~nIvL~GG~S~ipGf~~RL~~eL 516 (548)
+.+.|.+.|.+. . ...++...|+|+||||++ +.+.|++++
T Consensus 261 ~~~~I~~~i~~~-~--~~~~~~~~IvltGGGA~l--~~~~l~~~~ 300 (329)
T 4apw_A 261 FLKDAIKLIEKR-G--FKLDQLDSLIFIGGTTQK--LKEQISKTY 300 (329)
T ss_dssp HHHHHHHHHHHH-T--CCTTSCSEEEEESTTHHH--HHHHHHHHS
T ss_pred HHHHHHHHHHHc-C--CCHHHccEEEEECChHHH--HHHHHHHHc
Confidence 445555555543 1 112356899999999998 556666554
No 37
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=43.33 E-value=3.4 Score=42.19 Aligned_cols=43 Identities=23% Similarity=0.037 Sum_probs=28.4
Q ss_pred CHHHHHHHHHhhcCChhHHHhhhcCeEEecCCCCcCC--hHHHHHHHH
Q 008949 471 GLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGG--LIPAVEERV 516 (548)
Q Consensus 471 gL~eaI~~SI~~c~~~D~r~~L~~nIvL~GG~S~ipG--f~~RL~~eL 516 (548)
.+.+.|.+.|.+.- .+ .+.+..|+|+||||+++| +.+.|++++
T Consensus 272 ~~~~~I~~~i~~~l-~~--~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~ 316 (355)
T 3js6_A 272 SLIEEVMSNFEITV-GN--INSIDRIIVTGGGANIHFDSLSHYYSDVF 316 (355)
T ss_dssp HHHHHHHHHHHHHT-CC--TTSCSEEEEESTTHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHHh-hc--hhhccEEEEECcchhcchhhHHHHHHHHC
Confidence 34556666666542 22 355689999999999888 666665543
No 38
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=30.83 E-value=88 Score=29.99 Aligned_cols=52 Identities=10% Similarity=0.138 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCeeeeehhhHHHHhhc-----CCceEEEEEeCCCcEEEEEeeCCeeecC
Q 008949 255 MLSIVLRDLRFASAVVHQEGLAAVFGN-----GLSTACVVNMGAQVTSVICVEDGVALPN 309 (548)
Q Consensus 255 l~e~lfe~~~~~~v~~~~e~lla~y~~-----G~~tglVVDiG~~~T~V~pV~dG~~l~~ 309 (548)
+.+.| +.|++| +++.++.-++++|. +..+.++|-+|.+ .-..-|.+|.++..
T Consensus 87 l~~~l-~~~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 143 (292)
T 2gup_A 87 WYEAL-SSYQLP-VHLENDANCVGLSELLAHPELENAACVVIGTG-IGGAMIINGRLHRG 143 (292)
T ss_dssp HHHHT-GGGCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSS-EEEEEEETTEEECC
T ss_pred HHHHH-HHcCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCc-eEEEEEECCEEEec
Confidence 55666 788887 88889998888873 5578999999987 44666779988764
No 39
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=29.51 E-value=21 Score=37.11 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.7
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeecCCce
Q 008949 284 STACVVNMGAQVTSVICVEDGVALPNTEK 312 (548)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~~l~~s~~ 312 (548)
.+-+|..+|.+. +++.|.+|.++..+--
T Consensus 210 ~~lIv~HLGnGa-Si~Ai~~GksVDTsMG 237 (415)
T 2e1z_A 210 SGLIVAHLGNGA-SICAVRNGQSVDTSMG 237 (415)
T ss_dssp CEEEEEEESSSE-EEEEEETTEEEEESCC
T ss_pred cCEEEEEeCCch-hhhheeCCEEEecCCC
Confidence 367999999998 9999999999886543
No 40
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=25.05 E-value=24 Score=34.88 Aligned_cols=15 Identities=47% Similarity=0.756 Sum_probs=13.2
Q ss_pred EEEEcCCCceeeeec
Q 008949 20 LVVINPGSANIRIGL 34 (548)
Q Consensus 20 ~iVIhpGS~~lriG~ 34 (548)
+|-|+.|..|.|+..
T Consensus 2 ~igiD~G~sntK~~~ 16 (320)
T 2zgy_A 2 LVFIDDGSTNIKLQW 16 (320)
T ss_dssp EEEEEECSSEEEEEE
T ss_pred eEEEecCCccceEEE
Confidence 578999999999886
No 41
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=24.29 E-value=27 Score=36.26 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.6
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeecCCce
Q 008949 284 STACVVNMGAQVTSVICVEDGVALPNTEK 312 (548)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~~l~~s~~ 312 (548)
..-+|..+|.+. +++.|.+|.++..+--
T Consensus 202 ~~lIv~HLGnGa-Si~Ai~~GksVDTsMG 229 (408)
T 1g99_A 202 TKIITCHLGNGS-SITAVEGGKSVETSMG 229 (408)
T ss_dssp CEEEEEEESSSE-EEEEEETTEEEEESCC
T ss_pred CCEEEEEeCCcc-chhheECCEEEEeCCC
Confidence 367999999998 9999999999876543
No 42
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=23.87 E-value=24 Score=36.56 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.9
Q ss_pred ceEEEEEeCCCcEEEEEeeCCeeecCCceeec
Q 008949 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLP 315 (548)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~~l~~s~~~l~ 315 (548)
..-+|..+|.+. +++.|.+|.++..+--..+
T Consensus 201 ~~lIv~HLGnGa-Si~Ai~~GksVDTsMG~Tp 231 (403)
T 2iir_A 201 LKIITCHIGNGA-SVAAVKYGKCVDTSMGFTP 231 (403)
T ss_dssp CEEEEEEESSSE-EEEEEETTEEEEESCCSST
T ss_pred CCEEEEEeCCCe-eeeeeECCEEEEeCCCCCC
Confidence 367999999998 9999999999986543333
No 43
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=22.81 E-value=1.8e+02 Score=28.04 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=32.6
Q ss_pred HhcCCCeeeeehhhHHHHhh-----c--CCceEEEEEeCCCcEEEEEeeCCeeecC
Q 008949 261 RDLRFASAVVHQEGLAAVFG-----N--GLSTACVVNMGAQVTSVICVEDGVALPN 309 (548)
Q Consensus 261 e~~~~~~v~~~~e~lla~y~-----~--G~~tglVVDiG~~~T~V~pV~dG~~l~~ 309 (548)
+.|++| +++.++.-++++| . +..+.++|-+|.+ +-..-|.+|.++..
T Consensus 106 ~~~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv~~G~l~~G 159 (326)
T 2qm1_A 106 SALGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIVAAGKLLHG 159 (326)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECCC
T ss_pred HHhCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEeec
Confidence 345665 6677777776654 2 3467899999988 55667789988764
No 44
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=21.45 E-value=59 Score=32.01 Aligned_cols=64 Identities=13% Similarity=-0.043 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHhhcCChhHHHhhhcCeEEecC-CCCcCChHHHHHHHHhhhCCCCCccceEEeCCCccccc
Q 008949 470 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIGG-VALTGGLIPAVEERVLHAIPSNEAIDMVEVSSHLFFFM 539 (548)
Q Consensus 470 ~gL~eaI~~SI~~c~~~D~r~~L~~nIvL~GG-~S~ipGf~~RL~~eL~~~~p~~~~v~~V~~~~~R~~~~ 539 (548)
.+|..+|.+.|...+-.-.++.=..+|+++|| .+..|++.++|++.+... .. ++.++++=+|..
T Consensus 214 asl~~sV~~~I~~la~~~a~~~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-----~~-~~~~p~~~~~~g 278 (287)
T 2ews_A 214 AAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLR-----GC-KPYYVENGAFSG 278 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHT-----TC-EEEECTTGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchhcCHHHHHHHHHHHhhC-----Cc-eEEECCCccHHH
Confidence 35666666655432111122333347999999 899999999999876542 23 467777766654
No 45
>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}
Probab=21.45 E-value=35 Score=35.28 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCeeeeehhh---HHHHhh--cCC----ceEEEEEeCCCcEEEEEeeCCeeecCC
Q 008949 255 MLSIVLRDLRFASAVVHQEG---LAAVFG--NGL----STACVVNMGAQVTSVICVEDGVALPNT 310 (548)
Q Consensus 255 l~e~lfe~~~~~~v~~~~e~---lla~y~--~G~----~tglVVDiG~~~T~V~pV~dG~~l~~s 310 (548)
+-+.+.+++|+.+..|+--+ ++--++ .|+ .+-+|..+|.+ .+++.|.+|.++..+
T Consensus 166 lP~~~~~~~giRryGFHGlS~~yva~r~a~~lgk~~~~~~lIv~HLGnG-aSv~Ai~~GksvDts 229 (398)
T 4ijn_A 166 IDRELAETWHIKRYGFHGTSHEYVSQQAAIFLDRPLESLNQIVLHLGNG-ASASAVAGGKAVDTS 229 (398)
T ss_dssp SCHHHHHHTTCCCCCSCHHHHHHHHHHHHHHTTSCGGGCEEEEEEESSS-EEEEEEETTEEEEES
T ss_pred CCHHHHHhcCceEeCccHHhHHHHHHHHHHHhCCChHHccEEEEEECCC-cEEEEEECCEEEEeC
Confidence 44555566666655554433 222222 243 46799999998 899999999999654
No 46
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=20.44 E-value=65 Score=33.88 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.6
Q ss_pred ceEEEEEeCCCcEEEEEeeCCe
Q 008949 284 STACVVNMGAQVTSVICVEDGV 305 (548)
Q Consensus 284 ~tglVVDiG~~~T~V~pV~dG~ 305 (548)
.+..|+|+|.++|+|+-+.++.
T Consensus 190 ~t~gvlDlGGgStqi~~~~~~~ 211 (456)
T 3cj1_A 190 GTLGAMDLGGASTQITFETTSP 211 (456)
T ss_dssp CCCEEEEECSSEEEEEEECCSC
T ss_pred CceEEEEcCCCceEEEeccCCc
Confidence 4578999999999999886654
No 47
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=20.05 E-value=2.4e+02 Score=26.66 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=32.6
Q ss_pred HhcCCCeeeeehhhHHHHhhc-------CCceEEEEEeCCCcEEEEEeeCCeeecC
Q 008949 261 RDLRFASAVVHQEGLAAVFGN-------GLSTACVVNMGAQVTSVICVEDGVALPN 309 (548)
Q Consensus 261 e~~~~~~v~~~~e~lla~y~~-------G~~tglVVDiG~~~T~V~pV~dG~~l~~ 309 (548)
+.|++| +++.++.-++++|. +. +.++|-+|.+ .-..-|.+|.++..
T Consensus 94 ~~~~~p-v~v~NDa~aaa~~e~~~g~~~~~-~~v~l~~GtG-iG~gii~~G~l~~G 146 (289)
T 2aa4_A 94 QLTNLP-TIAINDAQAAAWAEFQALDGDIT-DMVFITVSTG-VGGGVVSGCKLLTG 146 (289)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHTSCTTCC-CEEEEEESSS-EEEEEEETTEEECC
T ss_pred HHHCCC-EEEechHHHHHHHHHHhCCCCCc-eEEEEEeCcc-EEEEEEECCEEeeC
Confidence 445665 67777777776542 34 8899999988 56667789988764
Done!