Query 008950
Match_columns 548
No_of_seqs 437 out of 2521
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 18:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 4.4E-66 9.6E-71 554.0 36.8 494 2-548 165-694 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 7.8E-31 1.7E-35 271.1 22.4 242 258-540 161-413 (421)
3 KOG2059 Ras GTPase-activating 99.9 1.6E-22 3.5E-27 208.3 16.6 242 264-546 5-276 (800)
4 cd04016 C2_Tollip C2 domain pr 99.9 2.2E-21 4.8E-26 166.1 14.5 119 263-392 1-121 (121)
5 cd08682 C2_Rab11-FIP_classI C2 99.8 2.4E-20 5.2E-25 162.6 14.0 119 266-391 1-126 (126)
6 cd04042 C2A_MCTP_PRT C2 domain 99.8 6.8E-20 1.5E-24 158.5 15.3 121 265-394 1-121 (121)
7 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.1E-19 2.5E-24 155.9 15.0 115 265-393 1-115 (116)
8 cd08681 C2_fungal_Inn1p-like C 99.8 5.6E-20 1.2E-24 158.4 12.5 117 264-392 1-118 (118)
9 cd08677 C2A_Synaptotagmin-13 C 99.8 4.7E-20 1E-24 155.2 11.5 106 259-367 9-117 (118)
10 cd08375 C2_Intersectin C2 doma 99.8 1.5E-19 3.2E-24 159.1 15.2 121 259-392 10-135 (136)
11 cd04016 C2_Tollip C2 domain pr 99.8 1.6E-19 3.4E-24 154.7 14.6 112 429-545 2-121 (121)
12 cd04036 C2_cPLA2 C2 domain pre 99.8 1.6E-19 3.4E-24 155.8 14.7 116 266-392 2-117 (119)
13 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.4E-19 3E-24 156.0 13.4 116 265-388 1-125 (126)
14 cd08395 C2C_Munc13 C2 domain t 99.8 1.7E-19 3.7E-24 154.0 13.7 106 265-371 1-113 (120)
15 COG5038 Ca2+-dependent lipid-b 99.8 6.4E-18 1.4E-22 183.9 27.1 318 222-546 655-1161(1227)
16 KOG1030 Predicted Ca2+-depende 99.8 1.1E-19 2.3E-24 158.7 10.6 100 261-364 3-102 (168)
17 cd04028 C2B_RIM1alpha C2 domai 99.8 5.7E-19 1.2E-23 155.8 14.1 110 263-373 28-141 (146)
18 cd08677 C2A_Synaptotagmin-13 C 99.8 3.4E-19 7.5E-24 150.0 11.9 113 384-531 1-118 (118)
19 cd04022 C2A_MCTP_PRT_plant C2 99.8 5.4E-19 1.2E-23 154.2 13.4 120 266-393 2-126 (127)
20 cd08391 C2A_C2C_Synaptotagmin_ 99.8 7.8E-19 1.7E-23 152.0 14.2 112 429-545 1-121 (121)
21 cd04019 C2C_MCTP_PRT_plant C2 99.8 7.4E-19 1.6E-23 157.0 14.2 128 265-395 1-134 (150)
22 cd08678 C2_C21orf25-like C2 do 99.8 1.5E-18 3.2E-23 151.2 15.7 122 266-395 1-122 (126)
23 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.1E-18 2.3E-23 150.6 14.5 119 266-392 2-121 (121)
24 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 9.1E-19 2E-23 152.0 14.0 122 265-390 1-122 (123)
25 cd04024 C2A_Synaptotagmin-like 99.8 9.7E-19 2.1E-23 153.0 14.0 123 264-392 1-128 (128)
26 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.1E-18 4.5E-23 150.1 15.9 122 263-394 3-124 (126)
27 cd08381 C2B_PI3K_class_II C2 d 99.8 4.5E-19 9.8E-24 153.2 11.6 105 263-368 12-121 (122)
28 cd04044 C2A_Tricalbin-like C2 99.8 1.2E-18 2.5E-23 151.5 13.9 122 263-394 1-124 (124)
29 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.4E-18 3E-23 150.4 13.5 115 264-392 1-121 (121)
30 cd04046 C2_Calpain C2 domain p 99.8 4.3E-18 9.4E-23 148.2 16.2 123 262-394 1-123 (126)
31 cd08682 C2_Rab11-FIP_classI C2 99.8 2E-18 4.2E-23 150.5 13.5 111 431-544 1-126 (126)
32 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.3E-18 2.8E-23 151.2 11.8 110 259-368 10-124 (125)
33 cd08681 C2_fungal_Inn1p-like C 99.8 2.7E-18 5.9E-23 147.8 13.1 112 429-545 1-118 (118)
34 cd04029 C2A_SLP-4_5 C2 domain 99.8 2.3E-18 5E-23 149.4 12.4 110 259-368 10-124 (125)
35 cd04015 C2_plant_PLD C2 domain 99.8 8.1E-18 1.7E-22 151.9 16.0 123 263-393 6-158 (158)
36 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.1E-17 2.3E-22 145.6 16.0 115 428-547 3-124 (126)
37 cd08387 C2A_Synaptotagmin-8 C2 99.8 2.8E-18 6E-23 149.2 12.1 111 258-368 10-122 (124)
38 cd08376 C2B_MCTP_PRT C2 domain 99.8 7.4E-18 1.6E-22 144.7 14.4 112 430-546 1-115 (116)
39 cd04029 C2A_SLP-4_5 C2 domain 99.8 4.6E-18 1E-22 147.5 13.2 115 383-532 1-125 (125)
40 cd08378 C2B_MCTP_PRT_plant C2 99.8 4.7E-18 1E-22 146.6 13.2 115 265-393 1-120 (121)
41 cd08377 C2C_MCTP_PRT C2 domain 99.8 8.3E-18 1.8E-22 145.1 14.6 118 264-392 1-118 (119)
42 cd04024 C2A_Synaptotagmin-like 99.8 7.3E-18 1.6E-22 147.4 14.4 113 429-545 1-128 (128)
43 cd04041 C2A_fungal C2 domain f 99.8 2E-18 4.3E-23 146.8 10.4 95 264-358 1-99 (111)
44 cd08381 C2B_PI3K_class_II C2 d 99.8 4.9E-18 1.1E-22 146.7 12.9 100 429-531 13-121 (122)
45 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 7.1E-18 1.5E-22 148.5 14.0 123 265-393 1-133 (133)
46 cd04028 C2B_RIM1alpha C2 domai 99.8 1.2E-17 2.5E-22 147.5 15.0 117 380-534 14-139 (146)
47 cd08379 C2D_MCTP_PRT_plant C2 99.8 8E-18 1.7E-22 145.1 13.4 110 430-541 1-125 (126)
48 cd08393 C2A_SLP-1_2 C2 domain 99.8 5.8E-18 1.3E-22 147.0 12.3 115 383-532 1-125 (125)
49 cd08378 C2B_MCTP_PRT_plant C2 99.8 9.2E-18 2E-22 144.8 13.2 109 431-545 2-119 (121)
50 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.9E-17 4.1E-22 143.2 15.1 112 431-547 2-121 (121)
51 cd08385 C2A_Synaptotagmin-1-5- 99.8 6.8E-18 1.5E-22 146.7 12.3 110 259-368 11-122 (124)
52 cd04010 C2B_RasA3 C2 domain se 99.8 9.6E-18 2.1E-22 149.0 13.4 123 266-390 2-147 (148)
53 cd08375 C2_Intersectin C2 doma 99.8 2.6E-17 5.7E-22 144.7 15.6 115 427-545 13-135 (136)
54 cd08388 C2A_Synaptotagmin-4-11 99.8 1E-17 2.2E-22 146.0 12.8 110 259-368 11-126 (128)
55 cd04014 C2_PKC_epsilon C2 doma 99.8 2.1E-17 4.5E-22 145.2 14.9 116 263-394 3-130 (132)
56 cd08680 C2_Kibra C2 domain fou 99.8 5.8E-18 1.3E-22 145.9 11.0 102 258-359 8-114 (124)
57 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.9E-17 4.2E-22 147.9 14.5 113 430-546 1-132 (150)
58 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.2E-17 4.7E-22 142.7 14.1 118 266-391 2-120 (121)
59 cd08685 C2_RGS-like C2 domain 99.7 1.3E-17 2.9E-22 143.2 12.5 102 428-531 11-119 (119)
60 cd08407 C2B_Synaptotagmin-13 C 99.7 3.5E-18 7.5E-23 149.8 8.9 126 383-548 1-137 (138)
61 cd04043 C2_Munc13_fungal C2 do 99.7 3.7E-17 8E-22 142.5 15.3 118 265-394 2-122 (126)
62 cd04022 C2A_MCTP_PRT_plant C2 99.7 1.9E-17 4.1E-22 144.5 13.3 113 431-546 2-126 (127)
63 cd04039 C2_PSD C2 domain prese 99.7 1.1E-17 2.5E-22 140.9 11.2 94 264-360 1-99 (108)
64 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.9E-17 4.1E-22 143.9 12.9 115 383-532 1-128 (128)
65 cd04036 C2_cPLA2 C2 domain pre 99.7 3E-17 6.5E-22 141.5 13.7 110 431-545 2-117 (119)
66 cd04017 C2D_Ferlin C2 domain f 99.7 4.8E-17 1E-21 143.4 15.2 120 265-395 2-134 (135)
67 cd04032 C2_Perforin C2 domain 99.7 2.1E-17 4.6E-22 142.6 12.5 106 249-358 13-119 (127)
68 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.9E-17 4E-22 144.0 12.2 101 259-359 10-115 (128)
69 cd08373 C2A_Ferlin C2 domain f 99.7 5.1E-17 1.1E-21 141.8 15.0 117 270-397 2-120 (127)
70 cd08678 C2_C21orf25-like C2 do 99.7 6.6E-17 1.4E-21 140.8 15.0 112 431-547 1-121 (126)
71 cd08382 C2_Smurf-like C2 domai 99.7 4.9E-17 1.1E-21 140.9 13.7 118 266-390 2-122 (123)
72 cd08386 C2A_Synaptotagmin-7 C2 99.7 3.7E-17 8.1E-22 142.3 12.9 111 259-369 11-124 (125)
73 cd08394 C2A_Munc13 C2 domain f 99.7 4.4E-17 9.5E-22 138.6 12.8 104 429-539 2-110 (127)
74 cd08389 C2A_Synaptotagmin-14_1 99.7 3.6E-17 7.7E-22 141.8 12.4 110 258-368 10-122 (124)
75 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 7.7E-17 1.7E-21 139.0 14.3 110 431-545 2-121 (121)
76 cd08387 C2A_Synaptotagmin-8 C2 99.7 5E-17 1.1E-21 141.2 13.1 115 383-532 2-123 (124)
77 cd04050 C2B_Synaptotagmin-like 99.7 5.6E-17 1.2E-21 136.4 12.8 98 431-535 2-104 (105)
78 cd08692 C2B_Tac2-N C2 domain s 99.7 1.8E-17 3.9E-22 143.1 9.9 126 384-548 1-135 (135)
79 cd08406 C2B_Synaptotagmin-12 C 99.7 1.1E-17 2.4E-22 146.7 8.8 125 384-548 2-135 (136)
80 cd04014 C2_PKC_epsilon C2 doma 99.7 1.5E-16 3.3E-21 139.7 15.8 112 428-547 3-130 (132)
81 cd08685 C2_RGS-like C2 domain 99.7 2.1E-17 4.6E-22 141.9 10.0 105 262-367 10-118 (119)
82 cd04050 C2B_Synaptotagmin-like 99.7 4.4E-17 9.6E-22 137.1 11.4 99 265-369 1-101 (105)
83 cd08521 C2A_SLP C2 domain firs 99.7 4.6E-17 1E-21 141.3 11.3 110 259-368 9-123 (123)
84 cd04030 C2C_KIAA1228 C2 domain 99.7 6.6E-17 1.4E-21 141.1 12.3 110 259-368 11-126 (127)
85 cd08680 C2_Kibra C2 domain fou 99.7 6.7E-17 1.4E-21 139.3 11.8 101 428-531 13-124 (124)
86 cd04031 C2A_RIM1alpha C2 domai 99.7 1.1E-16 2.3E-21 139.4 13.2 114 383-532 2-125 (125)
87 cd08390 C2A_Synaptotagmin-15-1 99.7 1E-16 2.2E-21 139.1 13.0 111 258-368 8-121 (123)
88 cd04030 C2C_KIAA1228 C2 domain 99.7 9.5E-17 2.1E-21 140.1 12.8 118 382-532 1-127 (127)
89 cd04052 C2B_Tricalbin-like C2 99.7 1.1E-16 2.4E-21 136.0 12.8 99 445-548 11-111 (111)
90 cd04015 C2_plant_PLD C2 domain 99.7 1.9E-16 4.2E-21 142.9 15.0 113 428-546 6-158 (158)
91 cd08385 C2A_Synaptotagmin-1-5- 99.7 1.2E-16 2.5E-21 139.0 13.1 115 383-532 2-123 (124)
92 cd04031 C2A_RIM1alpha C2 domai 99.7 8.4E-17 1.8E-21 140.1 12.0 109 259-368 11-124 (125)
93 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.5E-16 3.3E-21 144.1 13.8 128 383-533 1-138 (162)
94 cd08690 C2_Freud-1 C2 domain f 99.7 3.5E-16 7.5E-21 139.1 15.6 125 264-395 4-139 (155)
95 cd04027 C2B_Munc13 C2 domain s 99.7 2.1E-16 4.5E-21 137.8 13.9 115 265-390 2-127 (127)
96 cd08409 C2B_Synaptotagmin-15 C 99.7 4E-17 8.6E-22 144.1 9.4 128 383-548 1-136 (137)
97 cd04040 C2D_Tricalbin-like C2 99.7 2.3E-16 4.9E-21 135.2 13.7 113 266-387 1-113 (115)
98 cd08676 C2A_Munc13-like C2 dom 99.7 1.2E-16 2.5E-21 142.4 12.1 105 258-367 22-152 (153)
99 cd08406 C2B_Synaptotagmin-12 C 99.7 5.9E-17 1.3E-21 142.1 9.5 108 259-368 10-121 (136)
100 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 3.4E-16 7.4E-21 135.8 14.1 111 430-544 1-123 (123)
101 cd04044 C2A_Tricalbin-like C2 99.7 2.5E-16 5.4E-21 136.8 13.2 114 429-547 2-124 (124)
102 cd08373 C2A_Ferlin C2 domain f 99.7 4.8E-16 1E-20 135.6 14.7 111 435-548 2-118 (127)
103 cd08407 C2B_Synaptotagmin-13 C 99.7 7.2E-17 1.6E-21 141.5 9.3 108 259-368 10-123 (138)
104 cd08688 C2_KIAA0528-like C2 do 99.7 1.2E-16 2.6E-21 135.6 10.4 100 266-368 1-107 (110)
105 cd08395 C2C_Munc13 C2 domain t 99.7 2.9E-16 6.3E-21 134.2 12.7 102 430-534 1-113 (120)
106 cd04049 C2_putative_Elicitor-r 99.7 1.4E-16 3.1E-21 138.3 11.0 103 264-369 1-107 (124)
107 cd04051 C2_SRC2_like C2 domain 99.7 1.5E-16 3.2E-21 138.5 11.0 115 265-388 1-125 (125)
108 cd04018 C2C_Ferlin C2 domain t 99.7 2.7E-16 5.8E-21 139.9 12.7 107 431-540 2-132 (151)
109 cd08394 C2A_Munc13 C2 domain f 99.7 2.2E-16 4.7E-21 134.3 11.5 100 263-371 1-102 (127)
110 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.7E-16 3.6E-21 143.9 11.5 110 259-368 22-136 (162)
111 cd08377 C2C_MCTP_PRT C2 domain 99.7 7.9E-16 1.7E-20 132.7 15.1 110 429-545 1-118 (119)
112 cd04037 C2E_Ferlin C2 domain f 99.7 1.5E-16 3.3E-21 137.9 10.6 120 265-394 1-120 (124)
113 cd04039 C2_PSD C2 domain prese 99.7 3.2E-16 7E-21 132.0 12.1 92 429-523 1-99 (108)
114 cd04038 C2_ArfGAP C2 domain pr 99.7 2.7E-16 5.8E-21 139.3 11.8 93 263-360 1-93 (145)
115 cd08521 C2A_SLP C2 domain firs 99.7 4.5E-16 9.7E-21 135.0 12.7 113 384-531 1-123 (123)
116 cd08402 C2B_Synaptotagmin-1 C2 99.7 1.5E-16 3.2E-21 140.6 9.7 126 383-548 1-135 (136)
117 cd08691 C2_NEDL1-like C2 domai 99.7 1.2E-15 2.6E-20 133.6 15.2 118 265-390 2-136 (137)
118 cd08389 C2A_Synaptotagmin-14_1 99.7 5E-16 1.1E-20 134.6 12.6 114 383-532 2-123 (124)
119 cd04045 C2C_Tricalbin-like C2 99.7 3.2E-16 6.9E-21 135.0 11.2 102 264-369 1-102 (120)
120 cd08688 C2_KIAA0528-like C2 do 99.7 3.9E-16 8.4E-21 132.5 11.6 101 431-534 1-110 (110)
121 cd04018 C2C_Ferlin C2 domain t 99.7 4.2E-16 9.1E-21 138.7 12.1 93 265-360 1-108 (151)
122 cd08386 C2A_Synaptotagmin-7 C2 99.7 9.5E-16 2E-20 133.4 14.2 115 383-532 2-124 (125)
123 cd08404 C2B_Synaptotagmin-4 C2 99.7 2.4E-16 5.2E-21 139.2 10.4 126 383-548 1-135 (136)
124 KOG1030 Predicted Ca2+-depende 99.7 2.6E-16 5.5E-21 137.6 10.3 91 428-523 5-98 (168)
125 cd04009 C2B_Munc13-like C2 dom 99.7 4.5E-16 9.8E-21 136.8 11.5 101 259-359 11-119 (133)
126 cd04010 C2B_RasA3 C2 domain se 99.7 4E-16 8.7E-21 138.6 11.2 100 431-533 2-122 (148)
127 cd00276 C2B_Synaptotagmin C2 d 99.7 2.1E-16 4.6E-21 139.3 9.4 125 384-548 1-134 (134)
128 cd08388 C2A_Synaptotagmin-4-11 99.7 1E-15 2.2E-20 133.4 13.6 115 383-532 2-127 (128)
129 PLN03008 Phospholipase D delta 99.7 7.9E-16 1.7E-20 165.5 15.0 130 262-399 12-183 (868)
130 cd08384 C2B_Rabphilin_Doc2 C2 99.7 3E-16 6.5E-21 138.1 9.7 109 259-369 8-120 (133)
131 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.7E-15 3.6E-20 130.9 14.1 109 431-544 2-120 (121)
132 cd04026 C2_PKC_alpha_gamma C2 99.7 1.3E-15 2.8E-20 133.7 13.6 107 429-539 13-127 (131)
133 PLN03200 cellulose synthase-in 99.7 3.1E-16 6.8E-21 183.5 12.3 117 427-547 1978-2101(2102)
134 cd08408 C2B_Synaptotagmin-14_1 99.7 2.5E-16 5.4E-21 138.8 8.9 126 384-548 2-137 (138)
135 cd04011 C2B_Ferlin C2 domain s 99.7 9.3E-16 2E-20 130.4 12.0 102 428-533 3-110 (111)
136 cd08675 C2B_RasGAP C2 domain s 99.7 8.9E-16 1.9E-20 135.3 11.7 106 266-372 1-122 (137)
137 cd04011 C2B_Ferlin C2 domain s 99.7 9E-16 2E-20 130.5 11.4 98 264-368 4-108 (111)
138 cd08405 C2B_Synaptotagmin-7 C2 99.7 3.2E-16 6.9E-21 138.4 8.8 126 383-548 1-135 (136)
139 cd08405 C2B_Synaptotagmin-7 C2 99.7 4.5E-16 9.8E-21 137.5 9.5 98 259-356 10-111 (136)
140 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 1.8E-15 3.8E-20 133.2 13.2 111 430-545 1-132 (133)
141 cd08692 C2B_Tac2-N C2 domain s 99.6 9.1E-16 2E-20 132.5 11.0 109 259-368 9-121 (135)
142 cd08390 C2A_Synaptotagmin-15-1 99.6 1.9E-15 4.1E-20 131.1 12.9 114 384-532 1-122 (123)
143 cd08410 C2B_Synaptotagmin-17 C 99.6 4.6E-16 9.9E-21 137.0 9.1 126 384-548 1-135 (135)
144 cd04013 C2_SynGAP_like C2 doma 99.6 4.1E-15 9E-20 130.8 15.0 117 428-548 10-141 (146)
145 cd04052 C2B_Tricalbin-like C2 99.6 1.1E-15 2.5E-20 129.8 11.0 102 281-395 9-111 (111)
146 cd08402 C2B_Synaptotagmin-1 C2 99.6 5.1E-16 1.1E-20 137.1 9.0 99 258-356 9-111 (136)
147 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.8E-15 3.9E-20 131.2 12.3 108 259-367 10-122 (123)
148 cd04048 C2A_Copine C2 domain f 99.6 1.5E-15 3.3E-20 131.0 11.7 99 270-368 6-112 (120)
149 cd08408 C2B_Synaptotagmin-14_1 99.6 1.1E-15 2.4E-20 134.7 10.8 100 258-357 9-113 (138)
150 cd08384 C2B_Rabphilin_Doc2 C2 99.6 5.5E-16 1.2E-20 136.4 8.5 113 428-548 12-133 (133)
151 cd08404 C2B_Synaptotagmin-4 C2 99.6 8.1E-16 1.8E-20 135.8 9.5 108 259-368 10-121 (136)
152 cd08403 C2B_Synaptotagmin-3-5- 99.6 9.3E-16 2E-20 135.1 9.8 109 258-368 8-120 (134)
153 cd04017 C2D_Ferlin C2 domain f 99.6 4.8E-15 1E-19 130.6 14.4 116 430-548 2-134 (135)
154 cd08410 C2B_Synaptotagmin-17 C 99.6 1.5E-15 3.3E-20 133.7 10.9 98 259-356 9-110 (135)
155 cd04046 C2_Calpain C2 domain p 99.6 8E-15 1.7E-19 127.6 15.2 112 428-547 2-123 (126)
156 cd04021 C2_E3_ubiquitin_ligase 99.6 5E-15 1.1E-19 128.6 13.9 118 264-390 2-124 (125)
157 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.2E-15 2.6E-20 134.4 9.8 125 384-548 1-134 (134)
158 cd08690 C2_Freud-1 C2 domain f 99.6 9.4E-15 2E-19 129.9 14.6 114 431-546 4-137 (155)
159 cd04043 C2_Munc13_fungal C2 do 99.6 1.2E-14 2.6E-19 126.6 15.1 111 430-546 2-121 (126)
160 cd04013 C2_SynGAP_like C2 doma 99.6 1.1E-14 2.3E-19 128.3 14.7 125 263-395 10-141 (146)
161 cd04045 C2C_Tricalbin-like C2 99.6 8.5E-15 1.9E-19 126.1 13.8 106 429-540 1-110 (120)
162 cd08686 C2_ABR C2 domain in th 99.6 7.6E-15 1.6E-19 123.3 12.9 96 266-368 1-107 (118)
163 cd08382 C2_Smurf-like C2 domai 99.6 7.9E-15 1.7E-19 127.1 13.1 107 431-543 2-122 (123)
164 cd04038 C2_ArfGAP C2 domain pr 99.6 1E-14 2.3E-19 129.2 14.1 89 429-522 2-92 (145)
165 cd08409 C2B_Synaptotagmin-15 C 99.6 9.6E-16 2.1E-20 135.2 7.2 110 259-369 10-123 (137)
166 cd04027 C2B_Munc13 C2 domain s 99.6 9.9E-15 2.2E-19 127.2 13.4 110 430-543 2-127 (127)
167 cd04041 C2A_fungal C2 domain f 99.6 6.5E-15 1.4E-19 125.1 11.1 99 429-533 1-108 (111)
168 cd08383 C2A_RasGAP C2 domain ( 99.6 3.3E-14 7.1E-19 122.1 14.4 114 266-392 2-117 (117)
169 cd04049 C2_putative_Elicitor-r 99.6 3E-14 6.4E-19 123.8 14.2 104 429-535 1-110 (124)
170 cd04047 C2B_Copine C2 domain s 99.6 1.1E-14 2.5E-19 123.5 11.3 97 268-365 4-107 (110)
171 KOG0696 Serine/threonine prote 99.6 1.1E-15 2.4E-20 150.0 5.5 107 261-368 177-286 (683)
172 cd04032 C2_Perforin C2 domain 99.6 1.2E-14 2.7E-19 125.4 11.3 93 427-522 26-120 (127)
173 cd08383 C2A_RasGAP C2 domain ( 99.6 2.6E-14 5.6E-19 122.8 13.3 109 431-545 2-117 (117)
174 cd04009 C2B_Munc13-like C2 dom 99.6 1.9E-14 4.2E-19 126.4 12.5 104 383-521 2-118 (133)
175 cd00276 C2B_Synaptotagmin C2 d 99.6 2.8E-15 6E-20 132.1 7.2 109 259-369 9-121 (134)
176 cd04026 C2_PKC_alpha_gamma C2 99.6 1.4E-14 3E-19 127.1 11.2 105 264-369 13-120 (131)
177 cd04051 C2_SRC2_like C2 domain 99.6 2.2E-14 4.8E-19 124.8 11.6 108 431-541 2-125 (125)
178 cd00275 C2_PLC_like C2 domain 99.6 7E-14 1.5E-18 122.1 14.6 119 265-392 3-127 (128)
179 PLN03008 Phospholipase D delta 99.5 4.7E-14 1E-18 152.1 14.6 97 446-548 76-179 (868)
180 cd08675 C2B_RasGAP C2 domain s 99.5 3.9E-14 8.4E-19 124.8 11.2 102 431-535 1-122 (137)
181 KOG1013 Synaptic vesicle prote 99.5 3.5E-15 7.5E-20 142.4 4.7 224 259-517 88-327 (362)
182 KOG0696 Serine/threonine prote 99.5 5.9E-15 1.3E-19 144.9 6.4 107 428-538 179-293 (683)
183 cd04040 C2D_Tricalbin-like C2 99.5 1.3E-13 2.8E-18 118.0 13.1 100 431-534 1-104 (115)
184 cd04021 C2_E3_ubiquitin_ligase 99.5 2E-13 4.4E-18 118.5 14.2 108 430-543 3-124 (125)
185 cd08676 C2A_Munc13-like C2 dom 99.5 8.3E-14 1.8E-18 124.2 11.9 98 425-531 24-153 (153)
186 cd08691 C2_NEDL1-like C2 domai 99.5 2.8E-13 6.1E-18 118.7 14.6 111 430-543 2-136 (137)
187 PF00168 C2: C2 domain; Inter 99.5 7.2E-14 1.6E-18 112.3 9.6 85 266-350 1-85 (85)
188 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1.9E-13 4.1E-18 118.5 12.7 106 383-524 1-116 (123)
189 PLN03200 cellulose synthase-in 99.5 8.1E-14 1.8E-18 163.6 11.7 122 260-394 1976-2101(2102)
190 cd08686 C2_ABR C2 domain in th 99.5 6.5E-13 1.4E-17 111.6 13.3 107 431-545 1-118 (118)
191 cd04037 C2E_Ferlin C2 domain f 99.4 4.4E-13 9.4E-18 116.2 9.6 88 430-521 1-93 (124)
192 cd04048 C2A_Copine C2 domain f 99.4 8.9E-13 1.9E-17 113.7 11.1 98 435-533 6-114 (120)
193 KOG1011 Neurotransmitter relea 99.4 3.2E-13 6.9E-18 138.1 8.8 127 259-396 290-427 (1283)
194 cd00275 C2_PLC_like C2 domain 99.4 3.9E-12 8.5E-17 111.0 14.4 108 430-545 3-127 (128)
195 KOG1028 Ca2+-dependent phospho 99.4 4.6E-12 9.9E-17 131.7 14.5 133 380-547 150-295 (421)
196 KOG1326 Membrane-associated pr 99.4 1.2E-12 2.7E-17 140.5 9.7 92 263-355 612-703 (1105)
197 cd08374 C2F_Ferlin C2 domain s 99.4 6.4E-12 1.4E-16 108.6 11.4 94 266-359 2-124 (133)
198 cd04047 C2B_Copine C2 domain s 99.3 1.5E-11 3.2E-16 104.3 11.1 92 434-531 5-108 (110)
199 smart00239 C2 Protein kinase C 99.3 1.8E-11 3.9E-16 101.1 10.8 96 266-361 2-97 (101)
200 KOG1011 Neurotransmitter relea 99.3 7.3E-12 1.6E-16 128.3 7.5 117 423-543 289-421 (1283)
201 cd00030 C2 C2 domain. The C2 d 99.3 5.5E-11 1.2E-15 97.9 10.8 99 266-366 1-100 (102)
202 PF00168 C2: C2 domain; Inter 99.2 2.7E-11 5.8E-16 97.2 8.2 79 431-513 1-85 (85)
203 PLN02270 phospholipase D alpha 99.2 2E-10 4.3E-15 124.4 14.3 115 428-548 7-150 (808)
204 PLN02223 phosphoinositide phos 99.2 2.1E-10 4.5E-15 119.5 11.7 98 263-360 408-512 (537)
205 cd08374 C2F_Ferlin C2 domain s 99.1 1.6E-10 3.4E-15 100.0 8.9 90 431-523 2-125 (133)
206 PLN02270 phospholipase D alpha 99.1 6.3E-10 1.4E-14 120.6 14.3 128 263-398 7-153 (808)
207 cd00030 C2 C2 domain. The C2 d 99.1 6.3E-10 1.4E-14 91.5 11.4 97 431-531 1-102 (102)
208 PF10296 DUF2404: Putative int 99.1 4E-10 8.7E-15 91.5 8.9 85 78-163 1-89 (91)
209 smart00239 C2 Protein kinase C 99.1 1.2E-09 2.5E-14 90.2 11.2 90 431-524 2-97 (101)
210 PLN02952 phosphoinositide phos 99.1 2.4E-09 5.3E-14 114.0 14.9 104 263-369 469-580 (599)
211 KOG1328 Synaptic vesicle prote 99.0 5.4E-11 1.2E-15 123.7 1.9 134 258-397 108-305 (1103)
212 KOG2059 Ras GTPase-activating 99.0 1.4E-09 3E-14 113.7 9.6 112 430-547 6-126 (800)
213 PLN02223 phosphoinositide phos 98.9 1.2E-08 2.6E-13 106.6 14.4 112 427-545 407-536 (537)
214 PLN02230 phosphoinositide phos 98.9 3.4E-09 7.3E-14 112.7 10.6 98 263-360 468-573 (598)
215 KOG0169 Phosphoinositide-speci 98.9 7.1E-09 1.5E-13 110.2 11.8 98 265-362 617-721 (746)
216 cd08689 C2_fungal_Pkc1p C2 dom 98.9 3.7E-09 7.9E-14 85.8 7.4 86 266-359 1-89 (109)
217 PLN02222 phosphoinositide phos 98.9 9.6E-09 2.1E-13 109.2 11.4 98 263-360 451-556 (581)
218 PLN02228 Phosphoinositide phos 98.9 2.4E-08 5.2E-13 105.9 14.0 124 264-395 431-563 (567)
219 KOG1328 Synaptic vesicle prote 98.8 1.6E-09 3.5E-14 112.9 3.6 101 258-358 941-1049(1103)
220 PLN02952 phosphoinositide phos 98.8 4.8E-08 1.1E-12 104.2 14.4 100 428-534 469-582 (599)
221 KOG1327 Copine [Signal transdu 98.8 1.1E-07 2.3E-12 98.6 13.7 178 301-521 43-236 (529)
222 PLN02222 phosphoinositide phos 98.7 1.8E-07 4E-12 99.5 14.3 111 428-545 451-580 (581)
223 KOG1264 Phospholipase C [Lipid 98.7 5.7E-08 1.2E-12 102.7 9.9 126 264-398 1065-1194(1267)
224 PLN02230 phosphoinositide phos 98.7 1.7E-07 3.8E-12 99.9 13.5 112 427-545 467-597 (598)
225 cd08689 C2_fungal_Pkc1p C2 dom 98.7 9.7E-08 2.1E-12 77.6 8.6 82 431-522 1-89 (109)
226 KOG0905 Phosphoinositide 3-kin 98.6 4.7E-08 1E-12 107.1 7.3 104 428-534 1523-1636(1639)
227 KOG1031 Predicted Ca2+-depende 98.6 9.1E-08 2E-12 97.7 8.8 118 264-391 3-134 (1169)
228 PLN02352 phospholipase D epsil 98.6 2.9E-07 6.3E-12 100.0 12.6 122 261-398 7-135 (758)
229 PLN02352 phospholipase D epsil 98.6 3.9E-07 8.4E-12 99.0 12.8 109 428-548 9-132 (758)
230 KOG1031 Predicted Ca2+-depende 98.6 1.9E-07 4.1E-12 95.4 9.2 114 428-544 2-134 (1169)
231 PLN02228 Phosphoinositide phos 98.6 8.5E-07 1.8E-11 94.3 13.8 113 428-547 430-562 (567)
232 KOG1326 Membrane-associated pr 98.5 3.3E-07 7.2E-12 99.6 10.4 90 426-519 610-704 (1105)
233 KOG0169 Phosphoinositide-speci 98.5 1.2E-06 2.6E-11 93.6 12.5 111 430-547 617-745 (746)
234 cd08683 C2_C2cd3 C2 domain fou 98.4 5.6E-07 1.2E-11 75.4 6.5 101 431-531 1-143 (143)
235 KOG1264 Phospholipase C [Lipid 98.4 1.8E-06 3.8E-11 91.8 9.8 99 429-534 1065-1172(1267)
236 KOG0905 Phosphoinositide 3-kin 98.3 6.5E-07 1.4E-11 98.5 4.4 107 262-368 1522-1633(1639)
237 KOG1013 Synaptic vesicle prote 98.1 2.7E-06 6E-11 82.2 5.5 96 258-353 227-326 (362)
238 PLN02964 phosphatidylserine de 97.8 2.2E-05 4.9E-10 85.0 5.8 92 258-359 48-140 (644)
239 cd08684 C2A_Tac2-N C2 domain f 97.8 3.4E-05 7.4E-10 60.1 4.3 92 267-360 2-96 (103)
240 PF12416 DUF3668: Cep120 prote 97.7 0.011 2.5E-07 59.5 22.3 239 266-522 2-296 (340)
241 KOG1327 Copine [Signal transdu 97.7 7.3E-05 1.6E-09 78.0 6.5 88 270-358 142-236 (529)
242 cd08684 C2A_Tac2-N C2 domain f 97.7 4.4E-05 9.5E-10 59.5 3.5 91 433-529 3-101 (103)
243 KOG2060 Rab3 effector RIM1 and 97.5 0.00011 2.3E-09 72.6 5.4 105 426-534 266-380 (405)
244 KOG3837 Uncharacterized conser 97.5 0.00012 2.6E-09 72.9 5.2 117 428-546 366-503 (523)
245 cd08683 C2_C2cd3 C2 domain fou 97.3 0.00038 8.2E-09 58.7 5.3 93 266-359 1-133 (143)
246 PLN02964 phosphatidylserine de 97.3 0.00045 9.7E-09 75.1 6.4 90 426-523 51-141 (644)
247 KOG3532 Predicted protein kina 97.2 0.0016 3.5E-08 68.7 9.9 225 61-295 81-358 (1051)
248 KOG2060 Rab3 effector RIM1 and 97.1 0.00035 7.6E-09 69.1 3.5 109 261-370 266-379 (405)
249 PF12416 DUF3668: Cep120 prote 96.8 0.0082 1.8E-07 60.5 10.0 102 431-534 2-114 (340)
250 PF15627 CEP76-C2: CEP76 C2 do 96.7 0.033 7.1E-07 49.4 12.3 119 426-547 6-151 (156)
251 KOG3837 Uncharacterized conser 96.7 0.0011 2.4E-08 66.2 3.3 127 260-393 363-503 (523)
252 cd08398 C2_PI3K_class_I_alpha 96.5 0.08 1.7E-06 47.5 13.1 89 264-356 8-106 (158)
253 PF10358 NT-C2: N-terminal C2 96.1 0.29 6.2E-06 43.1 14.9 123 263-397 6-139 (143)
254 cd08398 C2_PI3K_class_I_alpha 96.1 0.033 7.2E-07 50.0 8.5 90 429-519 8-106 (158)
255 PF15627 CEP76-C2: CEP76 C2 do 96.0 0.11 2.4E-06 46.1 11.1 130 260-396 5-153 (156)
256 KOG1265 Phospholipase C [Lipid 95.8 0.017 3.7E-07 63.1 6.2 90 263-360 702-798 (1189)
257 PF10358 NT-C2: N-terminal C2 95.7 0.25 5.3E-06 43.5 12.5 116 429-548 7-137 (143)
258 cd08693 C2_PI3K_class_I_beta_d 95.7 0.077 1.7E-06 48.5 9.3 91 429-519 8-120 (173)
259 cd08693 C2_PI3K_class_I_beta_d 95.4 0.11 2.3E-06 47.6 9.2 90 264-355 8-119 (173)
260 cd08380 C2_PI3K_like C2 domain 95.3 0.11 2.3E-06 46.8 8.9 93 264-357 8-108 (156)
261 KOG1452 Predicted Rho GTPase-a 95.1 0.051 1.1E-06 52.7 6.2 118 260-393 47-167 (442)
262 cd08687 C2_PKN-like C2 domain 94.9 0.27 5.9E-06 39.1 8.7 86 283-392 7-92 (98)
263 KOG1265 Phospholipase C [Lipid 94.6 0.072 1.6E-06 58.5 6.5 89 427-523 701-798 (1189)
264 cd08380 C2_PI3K_like C2 domain 94.3 0.22 4.7E-06 44.8 8.2 90 429-519 8-107 (156)
265 cd04012 C2A_PI3K_class_II C2 d 94.2 0.21 4.6E-06 45.6 7.9 93 264-356 8-119 (171)
266 cd08399 C2_PI3K_class_I_gamma 93.2 0.58 1.3E-05 42.8 8.9 73 265-338 11-88 (178)
267 cd08397 C2_PI3K_class_III C2 d 93.1 0.25 5.4E-06 44.5 6.3 71 446-519 29-107 (159)
268 cd08397 C2_PI3K_class_III C2 d 93.0 0.32 7E-06 43.7 6.8 74 283-356 28-107 (159)
269 PF00792 PI3K_C2: Phosphoinosi 92.8 0.6 1.3E-05 41.1 8.3 65 292-356 11-85 (142)
270 cd08687 C2_PKN-like C2 domain 92.7 1.6 3.4E-05 34.8 9.3 83 447-545 9-92 (98)
271 PF15625 CC2D2AN-C2: CC2D2A N- 92.5 2.3 5E-05 38.6 11.8 71 284-358 36-108 (168)
272 cd08399 C2_PI3K_class_I_gamma 91.8 0.8 1.7E-05 41.9 7.9 91 429-519 10-122 (178)
273 PF15625 CC2D2AN-C2: CC2D2A N- 91.6 2.3 5.1E-05 38.6 10.7 69 446-520 36-107 (168)
274 cd08695 C2_Dock-B C2 domains f 90.1 3.4 7.5E-05 38.1 10.3 57 298-354 52-112 (189)
275 cd04012 C2A_PI3K_class_II C2 d 90.0 1.2 2.6E-05 40.6 7.3 91 428-519 7-119 (171)
276 PF00792 PI3K_C2: Phosphoinosi 89.6 2.3 4.9E-05 37.4 8.6 56 461-519 23-85 (142)
277 PF14429 DOCK-C2: C2 domain in 88.7 4.7 0.0001 37.2 10.4 56 300-355 60-120 (184)
278 cd08694 C2_Dock-A C2 domains f 88.5 5.4 0.00012 36.9 10.3 56 299-354 53-114 (196)
279 KOG1452 Predicted Rho GTPase-a 86.6 1.5 3.3E-05 42.9 5.8 114 426-546 48-167 (442)
280 smart00142 PI3K_C2 Phosphoinos 86.1 4.3 9.3E-05 33.3 7.6 73 266-338 13-91 (100)
281 PF14429 DOCK-C2: C2 domain in 84.1 4.6 0.0001 37.2 7.8 60 459-518 60-120 (184)
282 cd08697 C2_Dock-D C2 domains f 81.4 29 0.00063 32.0 11.7 107 238-355 3-123 (185)
283 PF11618 DUF3250: Protein of u 80.1 9.4 0.0002 31.8 7.3 84 301-393 13-105 (107)
284 KOG1329 Phospholipase D1 [Lipi 79.9 2.4 5.1E-05 47.6 4.7 97 446-547 137-241 (887)
285 PTZ00447 apical membrane antig 79.4 15 0.00033 36.6 9.5 110 429-546 58-171 (508)
286 cd08679 C2_DOCK180_related C2 78.6 24 0.00052 32.3 10.4 54 301-355 55-115 (178)
287 smart00142 PI3K_C2 Phosphoinos 78.6 7.1 0.00015 32.0 6.2 68 431-498 13-91 (100)
288 cd08695 C2_Dock-B C2 domains f 78.0 7.7 0.00017 35.8 6.7 58 459-517 54-112 (189)
289 cd08694 C2_Dock-A C2 domains f 74.9 11 0.00024 34.9 6.9 60 458-517 53-114 (196)
290 PF11618 DUF3250: Protein of u 73.5 17 0.00037 30.2 7.1 92 450-546 2-105 (107)
291 KOG1329 Phospholipase D1 [Lipi 72.7 9.7 0.00021 42.9 7.0 106 285-397 138-244 (887)
292 KOG4092 Mitochondrial F1F0-ATP 71.5 1.5 3.3E-05 34.8 0.4 45 49-93 26-70 (108)
293 PF08693 SKG6: Transmembrane a 67.9 3.9 8.3E-05 27.3 1.6 14 22-35 26-39 (40)
294 cd08696 C2_Dock-C C2 domains f 66.4 20 0.00042 32.9 6.6 57 299-355 54-118 (179)
295 cd08696 C2_Dock-C C2 domains f 62.6 33 0.00072 31.4 7.3 61 458-518 54-118 (179)
296 cd08679 C2_DOCK180_related C2 58.1 33 0.00071 31.4 6.6 58 461-518 55-115 (178)
297 KOG4269 Rac GTPase-activating 55.6 10 0.00022 42.5 3.1 74 258-338 753-828 (1112)
298 cd08697 C2_Dock-D C2 domains f 53.9 56 0.0012 30.1 7.3 61 458-518 56-123 (185)
299 KOG2238 Uncharacterized conser 50.9 5.5 0.00012 44.0 0.3 91 72-163 334-428 (795)
300 KOG0904 Phosphatidylinositol 3 50.0 52 0.0011 37.3 7.3 92 428-519 342-456 (1076)
301 KOG0694 Serine/threonine prote 47.1 5 0.00011 43.8 -0.8 69 284-356 27-95 (694)
302 PF10206 WRW: Mitochondrial F1 43.7 17 0.00036 30.0 1.9 43 51-93 28-70 (104)
303 PF07162 B9-C2: Ciliary basal 43.3 2.5E+02 0.0054 25.3 9.9 81 431-517 4-102 (168)
304 PF10409 PTEN_C2: C2 domain of 29.9 2.3E+02 0.005 24.2 7.2 90 265-357 5-98 (134)
305 PF14909 SPATA6: Spermatogenes 29.7 3.8E+02 0.0083 23.4 8.1 74 444-521 17-101 (140)
306 KOG4027 Uncharacterized conser 29.7 3.5E+02 0.0077 24.1 7.9 47 308-354 59-109 (187)
307 PF15102 TMEM154: TMEM154 prot 29.3 79 0.0017 27.8 3.9 14 24-37 74-87 (146)
308 PF05393 Hum_adeno_E3A: Human 29.2 13 0.00029 29.2 -0.7 41 11-51 31-73 (94)
309 PF04478 Mid2: Mid2 like cell 29.1 39 0.00085 29.8 2.0 10 27-36 69-78 (154)
310 KOG0904 Phosphatidylinositol 3 28.7 2.4E+02 0.0053 32.3 8.3 71 264-337 343-421 (1076)
311 KOG0694 Serine/threonine prote 28.2 24 0.00052 38.8 0.7 91 446-544 27-119 (694)
312 PTZ00447 apical membrane antig 28.1 6.4E+02 0.014 25.6 10.3 110 263-390 57-170 (508)
313 KOG4269 Rac GTPase-activating 27.3 56 0.0012 37.0 3.2 89 425-518 755-855 (1112)
314 PF06219 DUF1005: Protein of u 25.7 7.3E+02 0.016 26.0 10.5 65 328-395 95-169 (460)
315 PF14924 DUF4497: Protein of u 25.2 2.8E+02 0.0061 23.0 6.6 58 489-546 30-104 (112)
316 PRK00081 coaE dephospho-CoA ki 23.1 72 0.0016 29.5 2.8 37 50-97 65-101 (194)
317 PF14356 DUF4403: Domain of un 21.2 7.1E+02 0.015 26.2 10.2 58 177-244 309-366 (427)
318 PF05545 FixQ: Cbb3-type cytoc 20.9 18 0.0004 25.2 -1.3 18 19-36 18-35 (49)
319 PRK11874 petL cytochrome b6-f 20.5 44 0.00096 20.8 0.5 22 1-24 1-22 (30)
320 KOG2419 Phosphatidylserine dec 20.1 28 0.0006 37.8 -0.7 57 284-344 304-361 (975)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=4.4e-66 Score=553.97 Aligned_cols=494 Identities=27% Similarity=0.494 Sum_probs=409.1
Q ss_pred cchhhhhhcccccccchhhHHHHHheeeeeee----cCCcccccccccccccCCchhHhhhCCCCCCceeCCCCcchHHH
Q 008950 2 GFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSK----PNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWL 77 (548)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~d~E~~~Wl 77 (548)
|++||++|++||+++-+++.++ .+.++|+ +.+|..|+...+.+.+ +++ -.|+|++|||
T Consensus 165 ~v~Swifg~~~fs~~slffii~---~~~~vY~~~~~rv~rnird~v~~~~~~------ek~---------~nd~ESveWL 226 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIIL---VTMYVYRTCIKRVRRNIRDLVQQELSE------EKL---------ENDYESVEWL 226 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------Hhh---------hcchhHHHHH
Confidence 6799999999999555443333 3444454 2333334444443322 223 2699999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHhhHhhccCcceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEeeeeeEeC---
Q 008950 78 NRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG--- 153 (548)
Q Consensus 78 N~~l~~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~l~~~~~~~~~lG~~~P~i~~v~~~~~-~~~~~~ld~~~~~~~--- 153 (548)
|.+|+++||.+++.+++.|.+++++.|+++.|+| |+.+.+++||||++||||.+||.|+. ..+.+.||+++++..
T Consensus 227 NtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~ 305 (1227)
T COG5038 227 NTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDI 305 (1227)
T ss_pred HHHHHhheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccch
Confidence 9999999999999999999999999999999999 99999999999999999999999986 567899999999963
Q ss_pred ------------CCcEEEEEEE---ee-eEEEEEEEEEEEEEEEEEEEecCCCCCCceeEEEEEcCCCceEEEEEEEcc-
Q 008950 154 ------------NPNIVLVLKL---LS-FRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILG- 216 (548)
Q Consensus 154 ------------~~~i~l~~~~---~~-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~~f~~~P~id~~~~~~g- 216 (548)
|++|.|.++. ++ +++||.|+|+.|.|++||+++ |++.+|++..|.++|++.|.+||.++|+|
T Consensus 306 sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~ 384 (1227)
T COG5038 306 SDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGG 384 (1227)
T ss_pred hhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCC
Confidence 4568888865 44 789999999999999999999 99999999999999999999999999987
Q ss_pred ----ccccccchhHHHHHHHHHHHhhhcccCCceeeeeccccccccccCCceEEEEEEEEecCccccC--CCCCCCcEEE
Q 008950 217 ----GDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKD--FLGTSDPYVK 290 (548)
Q Consensus 217 ----~~~~~~P~l~~~i~~~i~~~~~~~~v~P~~~~~~l~~~~~~~~~~~~g~L~V~V~~A~~L~~~d--~~g~~dpyv~ 290 (548)
.|||++|||++||+++|..++++|+++|+.+++++.+...++...+.|+|.|+|.+|++|+..+ ..+..|||++
T Consensus 385 ~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit 464 (1227)
T COG5038 385 DFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYIT 464 (1227)
T ss_pred CccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEE
Confidence 4899999999999999999999999999999999987766558889999999999999999988 6799999999
Q ss_pred EEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEE-EEecc
Q 008950 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEF-TLDLL 369 (548)
Q Consensus 291 v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~-~l~l~ 369 (548)
+...+... .||++++++.||+|||+|+..+.. .++.|.++|||.+...+|+.+|+..++|..|...+.+.. ..++.
T Consensus 465 ~~~~~r~~--gkT~v~~nt~nPvwNEt~Yi~lns-~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~ 541 (1227)
T COG5038 465 VTFSDRVI--GKTRVKKNTLNPVWNETFYILLNS-FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL 541 (1227)
T ss_pred EEeccccC--CccceeeccCCccccceEEEEecc-cCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee
Confidence 99765443 599999999999999999999975 568999999999989999999999999999987754432 22332
Q ss_pred ccccCCCCCCCccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCCC--CC
Q 008950 370 KHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGEN--HN 447 (548)
Q Consensus 370 ~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~--~~ 447 (548)
.+.+..|+|+.+++|+|..++....+... + +......|++.++++++++|.... ..
T Consensus 542 --------~~~k~vGrL~yDl~ffp~~e~k~~~~~s~---------e-----~~ed~n~GI~k~tl~~~~~l~~~~~~~~ 599 (1227)
T COG5038 542 --------RNTKNVGRLTYDLRFFPVIEDKKELKGSV---------E-----PLEDSNTGILKVTLREVKALDELSSKKD 599 (1227)
T ss_pred --------ccCccceEEEEeeeeecccCCcccccccc---------C-----CcccCCcceeEEEeeccccccCcccccc
Confidence 24678999999999999977644332211 0 111224699999999999997632 33
Q ss_pred CcEEEEEEcCeEE-EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccc-ee
Q 008950 448 NPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNG-RI 525 (548)
Q Consensus 448 dpyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~ 525 (548)
..+++++...+.. .|+.++.+.+|.||+.++-.+.+. ....+.+.+.|... .+.+|+...+|.+++... .-
T Consensus 600 ~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~-~ns~~~~~~~d~~~------g~~i~~~~~~l~~li~~t~dt 672 (1227)
T COG5038 600 NKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDR-KNSSIKVVTFDVQS------GKVIATEGSTLPDLIDRTLDT 672 (1227)
T ss_pred ceeEEEEecceEEeccceeeeccCCceeeecceEeccC-cceeEEEEeccccc------CceeccccccchHhhhccccc
Confidence 3448888888765 668899999999999999999886 45578888888642 378999999999998764 34
Q ss_pred ceEEEeCCCCCeEEEEEEEEEeC
Q 008950 526 NEKYHLINSKRGVIHVDIRWKMI 548 (548)
Q Consensus 526 ~~w~~L~~~~~G~i~l~~~~~~~ 548 (548)
..||++. +++|+|.++.-|+||
T Consensus 673 ~~~f~~~-~~kg~I~~t~~W~Pi 694 (1227)
T COG5038 673 FLVFPLR-NPKGRIFITNYWKPI 694 (1227)
T ss_pred eEEEEcC-CCcceEEEEecccee
Confidence 5899998 679999999999996
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.8e-31 Score=271.06 Aligned_cols=242 Identities=31% Similarity=0.465 Sum_probs=200.7
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEEE
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVF 335 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~ 335 (548)
.++.....|.|+|++|++|+..|..|.+||||++++.+.+..+.+|++.++|+||+|||+|.|.+.. .....|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 4667789999999999999999977889999999999988777899999999999999999999753 34789999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecccCcccccccccccccCCCC
Q 008950 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSG 415 (548)
Q Consensus 336 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~ 415 (548)
|+|++++|++||++.++|..+.......+|.++....... ....|+|.++++|.|.
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p~-------------------- 296 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLPT-------------------- 296 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeecC--------------------
Confidence 9999999999999999999998887778888886543221 2222899999999985
Q ss_pred CCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCC
Q 008950 416 NDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH 487 (548)
Q Consensus 416 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~ 487 (548)
.|.|+|.|.+|+||.. .+.+||||++++.. +++||.+.+++.||+|||+|.|.++.....
T Consensus 297 ------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~ 364 (421)
T KOG1028|consen 297 ------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA 364 (421)
T ss_pred ------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhh
Confidence 6899999999999986 35789999999843 345999999999999999999988764333
Q ss_pred C-eEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEEE
Q 008950 488 E-KIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIH 540 (548)
Q Consensus 488 ~-~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~ 540 (548)
+ .+.|+|||++. ++.+++||++.+.... .+....+|..+.++++-.+.
T Consensus 365 ~~~l~l~V~d~d~---~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv~ 413 (421)
T KOG1028|consen 365 EVSLELTVWDHDT---LGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPVA 413 (421)
T ss_pred eeEEEEEEEEccc---ccccceeeEEEecCCC--CchHHHHHHHHHhCccCcee
Confidence 3 78999999985 7888899999998875 23334567666666544444
No 3
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.89 E-value=1.6e-22 Score=208.25 Aligned_cols=242 Identities=21% Similarity=0.267 Sum_probs=191.7
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCC
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (548)
..|.|+|.+|+||++.+..|.+||||.|.++.+.+ .||.++.+++.|.|.|.|+|.+.. .-+.|.|-|||+| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccc-cccc
Confidence 46899999999999999999999999999998775 689999999999999999999965 4578999999999 9999
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCccc
Q 008950 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEE 423 (548)
Q Consensus 344 d~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (548)
+.||.+.+.-.+|......+.|+.|.. .++ +....|+|++++.+.+...+.
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~~~~------------------------ 131 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAIQSS------------------------ 131 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEeccccCCC------------------------
Confidence 999999999999987777777877743 233 467899999999998754221
Q ss_pred ccCCceEEEEEEeeeecC-CC-CCCCCcEEEEEEcCeE----EEeeeccCCCCCccCceEEEEccCC-----------CC
Q 008950 424 ALSGAGLLSVLVQGAEDV-EG-ENHNNPYAIILYKGDK----KRTKMIRKTRDPAWNEEFQFMLDEP-----------PL 486 (548)
Q Consensus 424 ~~~~~g~L~V~v~~a~~L-~~-~~~~dpyv~v~l~~~~----~kT~v~~~t~nP~wne~f~f~v~~~-----------~~ 486 (548)
...++. ..++++ |. ++.+|||+++...+.. ++|+++++|.+|.|+|.|.|.+... +.
T Consensus 132 -~~~c~~-----L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 132 -GLVCHV-----LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred -cchhhh-----hhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCccc
Confidence 011222 233333 33 4579999999987654 4999999999999999999998754 11
Q ss_pred ---CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC----------CeEEEEEEEEE
Q 008950 487 ---HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK----------RGVIHVDIRWK 546 (548)
Q Consensus 487 ---~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~----------~G~i~l~~~~~ 546 (548)
.-.|.+++|++... ..++.++|++.+++...........||.|...+ -|.+++.+.++
T Consensus 206 e~~~l~irv~lW~~~~~--~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNL--VINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred CCceeeEEEeeccchhh--hhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 12688889986542 456999999999999988666668999996432 47777777654
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=2.2e-21 Score=166.09 Aligned_cols=119 Identities=21% Similarity=0.334 Sum_probs=101.6
Q ss_pred ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecC-CCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC
Q 008950 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (548)
.|.|.|+|++|++++..+ .|++||||++.+++++ .+|+++.+ +.||+|||+|.|.+.+ ....|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~---~kT~v~~~~~~nP~WNe~F~f~v~~-~~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAV---YETPTAYNGAKNPRWNKTIQCTLPE-GVDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEE---EEeEEccCCCCCCccCeEEEEEecC-CCcEEEEEEEeCCCCc
Confidence 489999999999998877 7999999999999865 48988765 8999999999999975 3468999999999999
Q ss_pred CCCeeEEEEEECc-ccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950 342 GHDRLGMQLVPLK-LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (548)
Q Consensus 342 ~dd~lG~~~i~l~-~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 392 (548)
+|++||++.+++. .+..++....|++|... ......|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777777888888531 123577999999987
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=2.4e-20 Score=162.55 Aligned_cols=119 Identities=33% Similarity=0.443 Sum_probs=100.8
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEec-----CCCCEEEEEEEEcCCC
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-----PESQILQLQVFDWDKV 340 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-----~~~~~L~v~v~d~d~~ 340 (548)
++|+|++|+||+.++..|.+||||++++++.+ ++|++++++.||+|||+|.|.+.. +....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 589999999999999999999976 3567899999999998
Q ss_pred CCCCeeEEEEEECcccC--CCCceEEEEeccccccCCCCCCCccccEEEEEEE
Q 008950 341 GGHDRLGMQLVPLKLLT--PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (548)
Q Consensus 341 ~~dd~lG~~~i~l~~l~--~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (548)
++|++||++.++++++. .+.....|++|.... ....+.+|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~----~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP----GKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC----CCCccccceEEEEeC
Confidence 89999999999999987 555667888875321 123467899999873
No 6
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.84 E-value=6.8e-20 Score=158.55 Aligned_cols=121 Identities=33% Similarity=0.503 Sum_probs=106.3
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd 344 (548)
.|+|+|++|++|+..|..|.+||||++++++.. .++|++++++.||.|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 378999999999999989999999999998643 36899999999999999999998764 578999999999998999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (548)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 394 (548)
+||++.++++++..+...+.|++|... .+.+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 999999999999998888999998532 12467899999999876
No 7
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.83 E-value=1.1e-19 Score=155.95 Aligned_cols=115 Identities=34% Similarity=0.513 Sum_probs=103.4
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd 344 (548)
+++|+|++|++|+..+..|.+||||++++++.. ++|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999998654 68999999999999999999998766789999999999988999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (548)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 393 (548)
+||++.++++++..+.....|++|. ...|+|++.++|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~-----------~~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELE-----------DGEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEcc-----------CCCcEEEEEEEec
Confidence 9999999999999988889999883 2369999998874
No 8
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.83 E-value=5.6e-20 Score=158.37 Aligned_cols=117 Identities=32% Similarity=0.444 Sum_probs=100.3
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeec-CCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (548)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||+|||+|.|.+.....+.|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999989999999999998744 5788764 5899999999999998766788999999998766
Q ss_pred CCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (548)
Q Consensus 343 dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 392 (548)
|++||++.++++++..+.....|++|.. +++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 8999999999999877666667777643 24678999999986
No 9
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.83 E-value=4.7e-20 Score=155.24 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=89.2
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC-cccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVF 335 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~-~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~ 335 (548)
+....|.|+|+|++|++|+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+.. .....|.|+||
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4556799999999999999 3 46799999999975 34456799999999999999999999864 34678999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 008950 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (548)
Q Consensus 336 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~ 367 (548)
|+|+++++++||++.++++++..+...++|.+
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred eCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 99999999999999999998865555555543
No 10
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.83 E-value=1.5e-19 Score=159.07 Aligned_cols=121 Identities=30% Similarity=0.438 Sum_probs=103.3
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcC
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d 338 (548)
.....|.|+|+|++|++|+..|..|.+||||+++++... ++|++++++.||.|||+|.|.+.++..+.|.|+|||++
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 456779999999999999999989999999999998654 69999999999999999999998777789999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCC-----ceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950 339 KVGGHDRLGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (548)
Q Consensus 339 ~~~~dd~lG~~~i~l~~l~~~~-----~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 392 (548)
..++|++||++.+++.++.... ....++.+ .....|+|++++.+
T Consensus 87 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 87 FFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 9999999999999999998621 12233332 25678999999976
No 11
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.82 E-value=1.6e-19 Score=154.68 Aligned_cols=112 Identities=26% Similarity=0.422 Sum_probs=97.4
Q ss_pred eEEEEEEeeeecCCCC--CCCCcEEEEEEcCeEEEeeeccC-CCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC
Q 008950 429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS 505 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~--~~~dpyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 505 (548)
|.|+|+|++|++++.. +.+||||++.+++++++|+++++ +.||+|||+|.|.+.+. .+.|.|+|+|++. ++.
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~---~~~ 76 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERA---FTM 76 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCC---CcC
Confidence 7899999999988653 68999999999999999999876 89999999999999763 3579999999985 678
Q ss_pred CcceEEEEEech-hhhccceeceEEEeCC----CCCeEEEEEEEE
Q 008950 506 KESLGHVEINLT-DVVHNGRINEKYHLIN----SKRGVIHVDIRW 545 (548)
Q Consensus 506 d~~lG~~~i~L~-~l~~~~~~~~w~~L~~----~~~G~i~l~~~~ 545 (548)
|++||++.+++. .+..+...+.||+|.+ ...|+|+|++.|
T Consensus 77 dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 77 DERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 999999999996 4666666899999987 347999999975
No 12
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.82 E-value=1.6e-19 Score=155.75 Aligned_cols=116 Identities=34% Similarity=0.478 Sum_probs=101.7
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~ 345 (548)
|+|+|++|++|+..+..+.+||||++++++.....++|++++++.||+|||+|.|.+.....+.|.|+|||+|.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975433457999999999999999999999765567899999999988 8999
Q ss_pred eEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (548)
Q Consensus 346 lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 392 (548)
||++.++++++..+.....|+++. .+.+|+|++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEe
Confidence 999999999999998888999883 2457999888864
No 13
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=1.4e-19 Score=156.00 Aligned_cols=116 Identities=27% Similarity=0.391 Sum_probs=99.0
Q ss_pred EEEEEEEEecC---ccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC
Q 008950 265 ILHVKVVRASK---LLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (548)
Q Consensus 265 ~L~V~V~~A~~---L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (548)
.|+|+|++|+| |+.+|..|.+||||++++++++ .||++++++.||+|||+|.|.+.++. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~---~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKW---VRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEE---eEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 48999999999 8889999999999999998775 48999999999999999999997754 58999999999863
Q ss_pred ------CCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEE
Q 008950 342 ------GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVV 388 (548)
Q Consensus 342 ------~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l 388 (548)
+|++||++.++++++..+.....|++|... + +...+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence 899999999999999998888888888532 1 123556788775
No 14
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=1.7e-19 Score=154.03 Aligned_cols=106 Identities=27% Similarity=0.385 Sum_probs=91.4
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcC----cccceeeeeeecCCCCCeeeceEEEEEec---CCCCEEEEEEEEc
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTG----EKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVFDW 337 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~----~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~d~ 337 (548)
.|+|+|++|++|+..+ .|.+||||++++.+ .+.++++|+++++|+||+|||+|.|.+.. +....|.|+|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 49999999999842 33334689999999999999999999974 2346799999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccc
Q 008950 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371 (548)
Q Consensus 338 d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~ 371 (548)
|..++|++||++.++++++..++....|++|.+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 9888899999999999999999888899998554
No 15
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.81 E-value=6.4e-18 Score=183.85 Aligned_cols=318 Identities=21% Similarity=0.341 Sum_probs=226.1
Q ss_pred cchhHHHHHHHHHHHhhhcccCCce-------eee---eccc----cccccccCCceEEEEEEEEecCccccCCCCCCCc
Q 008950 222 IPGLYQFIQKCITKYVAGIYIWPQT-------YEI---PILD----ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDP 287 (548)
Q Consensus 222 ~P~l~~~i~~~i~~~~~~~~v~P~~-------~~~---~l~~----~~~~~~~~~~g~L~V~V~~A~~L~~~d~~g~~dp 287 (548)
++...+-+.+.|.......++.|.+ ++. |+.- .+......+.|.++|+|..|.+|......+++||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 4556666678888888888888876 222 4431 2222478899999999999999998888899999
Q ss_pred EEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCce---EE
Q 008950 288 YVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK---EF 364 (548)
Q Consensus 288 yv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~---~~ 364 (548)
|+++.+++.. ++||-....++||.|||..+..+..+ .+.+.++++|++..+.|..+|++.++++++...... ..
T Consensus 735 ya~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 9999999743 47888889999999999999999774 567999999999999999999999999998763211 11
Q ss_pred EEeccccccCCCCCCCccccEEEEEEEEEecccCccc------------------------c------ccc---------
Q 008950 365 TLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIK------------------------F------SSV--------- 405 (548)
Q Consensus 365 ~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~------------------------~------~~~--------- 405 (548)
+..-.....+....+...+|++.+.+.|+|..-.-.. + |.+
T Consensus 812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v 891 (1227)
T COG5038 812 TIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEV 891 (1227)
T ss_pred eecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceee
Confidence 2111111111111135678999999999986421000 0 000
Q ss_pred ----c------------------------------------------c-cc----ccC----------------------
Q 008950 406 ----S------------------------------------------K-KY----SRK---------------------- 412 (548)
Q Consensus 406 ----~------------------------------------------~-~~----~~~---------------------- 412 (548)
+ + .+ +..
T Consensus 892 ~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s 971 (1227)
T COG5038 892 EELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYS 971 (1227)
T ss_pred ccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccc
Confidence 0 0 00 000
Q ss_pred -------CC---CCC------------------------CC-----------Ccc-------cccCCceEEEEEEeeeec
Q 008950 413 -------GS---GND------------------------QS-----------SDE-------EALSGAGLLSVLVQGAED 440 (548)
Q Consensus 413 -------~~---~~~------------------------~~-----------~~~-------~~~~~~g~L~V~v~~a~~ 440 (548)
.. ..+ .. .|. ..-..+|.|.+.+.+|.|
T Consensus 972 ~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~n 1051 (1227)
T COG5038 972 ETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGEN 1051 (1227)
T ss_pred eEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCC
Confidence 00 000 00 000 001246779999999999
Q ss_pred CCC---CCCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEec
Q 008950 441 VEG---ENHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINL 516 (548)
Q Consensus 441 L~~---~~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L 516 (548)
|+. ++.+||||++.++++ .++|+++++|+||+|||.|...+... ..+.+.+.|+|++. ...++.||.+.++|
T Consensus 1052 l~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~---~~knd~lg~~~idL 1127 (1227)
T COG5038 1052 LPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDS---GEKNDLLGTAEIDL 1127 (1227)
T ss_pred CcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeeccc---CCCccccccccccH
Confidence 987 356999999999998 57999999999999999999999875 56789999999986 46789999999999
Q ss_pred hhhhccceeceEEEeCCCC----CeEEEEEEEEE
Q 008950 517 TDVVHNGRINEKYHLINSK----RGVIHVDIRWK 546 (548)
Q Consensus 517 ~~l~~~~~~~~w~~L~~~~----~G~i~l~~~~~ 546 (548)
..+..+...+...+|.+.. .|.++....++
T Consensus 1128 ~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r 1161 (1227)
T COG5038 1128 SKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFR 1161 (1227)
T ss_pred hhcCcCCccceeeeccCcceEecccEeecceecc
Confidence 9998877666666666543 56666555554
No 16
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=158.66 Aligned_cols=100 Identities=45% Similarity=0.746 Sum_probs=92.3
Q ss_pred CCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC
Q 008950 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (548)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~ 340 (548)
...|.|+|+|++|.||..+|..++|||||++.+++++. +|+++++++||+|||.|.|.+.++ ...|++.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46799999999999999999989999999999999884 899999999999999999999986 56899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEE
Q 008950 341 GGHDRLGMQLVPLKLLTPHETKEF 364 (548)
Q Consensus 341 ~~dd~lG~~~i~l~~l~~~~~~~~ 364 (548)
++||+||.++|++..+.......+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999999987765554
No 17
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.80 E-value=5.7e-19 Score=155.79 Aligned_cols=110 Identities=27% Similarity=0.381 Sum_probs=95.3
Q ss_pred ceEEEEEEEEecCccccC-CCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEE-EcC
Q 008950 263 VGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DWD 338 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d~d 338 (548)
.|.|.|+|++|+||+..+ ..|.+||||++++.+.. ..++||+++++|+||+|||+|.|.+. ..+..|.++|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 589999999999999864 56889999999996543 34679999999999999999999997 57789999999 678
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEecccccc
Q 008950 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373 (548)
Q Consensus 339 ~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~ 373 (548)
..+++++||++.++|+++..+.....|++|.....
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred CCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 88899999999999999987777778888865443
No 18
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.80 E-value=3.4e-19 Score=150.01 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=95.6
Q ss_pred cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCCCCCCcEEEEEEcC----eE
Q 008950 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKG----DK 459 (548)
Q Consensus 384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~----~~ 459 (548)
|+|++++.|.|. .+.|+|+|++|+||+..+.+||||++++.. .+
T Consensus 1 ~~l~fsL~Y~~~--------------------------------~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k 48 (118)
T cd08677 1 PKLHYSLSYDKQ--------------------------------KAELHVNILEAENISVDAGCECYISGCVSVSEGQKE 48 (118)
T ss_pred CeEEEEEEEcCc--------------------------------CCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccE
Confidence 578999999975 689999999999999767899999999964 45
Q ss_pred EEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950 460 KRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL 531 (548)
Q Consensus 460 ~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L 531 (548)
++|++.++|.||+|||+|.|.+..... ...|.++|||.+. ++++++||++.++++++.......+|-.|
T Consensus 49 ~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr---fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 49 AQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR---FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC---CCCCceEEEEEEccccccCCccccchhcC
Confidence 699999999999999999999876433 3479999999985 88999999999999987555555677654
No 19
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=5.4e-19 Score=154.23 Aligned_cols=120 Identities=33% Similarity=0.476 Sum_probs=100.9
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC---CCEEEEEEEEcCCCC-
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---SQILQLQVFDWDKVG- 341 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~---~~~L~v~v~d~d~~~- 341 (548)
|+|+|++|++|+..+..|.+||||++++++++ ++|++++++.||.|||+|.|.+.++. ...|.|+|||++..+
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~ 78 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR 78 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence 79999999999999988999999999999765 58999999999999999999987543 368999999999876
Q ss_pred CCCeeEEEEEECcccC-CCCceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950 342 GHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (548)
Q Consensus 342 ~dd~lG~~~i~l~~l~-~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 393 (548)
+|++||++.++++++. .+.....|++|.+.. ..+..+|+|+|++.+.
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 8999999999999998 455666777775421 1245789999998764
No 20
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.80 E-value=7.8e-19 Score=151.97 Aligned_cols=112 Identities=28% Similarity=0.559 Sum_probs=101.0
Q ss_pred eEEEEEEeeeecCCCC---------CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950 429 GLLSVLVQGAEDVEGE---------NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT 499 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~---------~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 499 (548)
|+|.|+|.+|+||+.. +.+||||++++++..++|++++++.||.|||.|.|.+.+. ..+.|.++|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 6799999999999853 3689999999999889999999999999999999999764 45789999999974
Q ss_pred CccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEE
Q 008950 500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRW 545 (548)
Q Consensus 500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~ 545 (548)
. .+++||++.++++++..++...+||+|.+..+|+|+|+++|
T Consensus 80 ---~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 ---D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred ---C-CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 4 78999999999999988777789999998889999999998
No 21
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=7.4e-19 Score=156.97 Aligned_cols=128 Identities=25% Similarity=0.294 Sum_probs=104.7
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecC-CCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCC
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (548)
.|+|+|++|++|+..|..|.+||||+++++++. .+|+++.+ +.||+|||+|.|.+.++..+.+.|+|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 489999999999999999999999999999754 58888866 69999999999999876667999999999988889
Q ss_pred CeeEEEEEECcccCCC----CceEEEEeccccccC-CCCCCCccccEEEEEEEEEec
Q 008950 344 DRLGMQLVPLKLLTPH----ETKEFTLDLLKHTNI-SDPKDMKQRGKIVVELTYVPF 395 (548)
Q Consensus 344 d~lG~~~i~l~~l~~~----~~~~~~l~l~~~~~~-~~~~~~~~~G~l~l~l~~~p~ 395 (548)
++||++.++++++..+ .....|++|...... .+.+..+..|+|+|++.|.+.
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 9999999999998753 334678887543211 011234678999999999854
No 22
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.80 E-value=1.5e-18 Score=151.17 Aligned_cols=122 Identities=25% Similarity=0.395 Sum_probs=103.0
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~ 345 (548)
|.|+|++|+||+. ..|.+||||+++++.. ...++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP-PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC-CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999988 6789999999999742 234699999999999999999999854 46789999999999989999
Q ss_pred eEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (548)
Q Consensus 346 lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 395 (548)
||++.++++++..+.....|+++.... ..+....|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~----~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRP----YEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCC----CCCCCcceEEEEEEEEecc
Confidence 999999999999887777788875321 1235679999999999865
No 23
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=1.1e-18 Score=150.57 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=100.3
Q ss_pred EEEEEEEecCccccC-CCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950 266 LHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (548)
Q Consensus 266 L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd 344 (548)
|.|+|++|+||+..+ ..|.+||||+++++++. .++|+++++|.||.|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999997553 36899999999999999999999753 478999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (548)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 392 (548)
+||++.++++++..+.....|++|.+.. ...+..|+|++++.|
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 9999999999999877778888875431 123468999999864
No 24
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.80 E-value=9.1e-19 Score=151.96 Aligned_cols=122 Identities=30% Similarity=0.490 Sum_probs=103.9
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd 344 (548)
.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+.....|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999998654 58999999999999999999998766678999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEE
Q 008950 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (548)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 390 (548)
+||++.++++++..+.....|+.+..... ......+..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~-~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPR-AEEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCC-CCccccCceEEEEEEe
Confidence 99999999999987766677887765432 2233567889999876
No 25
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.80 E-value=9.7e-19 Score=152.95 Aligned_cols=123 Identities=30% Similarity=0.453 Sum_probs=103.0
Q ss_pred eEEEEEEEEecCccccCC--CCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC
Q 008950 264 GILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~--~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (548)
|+|+|+|++|++|+..+. .+.+||||++++++.. ++|++++++.||.|||+|.|.+.+...+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999988 8899999999997654 58999999999999999999998766789999999999988
Q ss_pred CCCeeEEEEEECcccCC---CCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950 342 GHDRLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (548)
Q Consensus 342 ~dd~lG~~~i~l~~l~~---~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 392 (548)
++++||++.+++.++.. ......|++|..... ..+...+|+|+++++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~---~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP---GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCccc---CccccccceEEEEEEC
Confidence 99999999999999873 233456777643211 1235689999999875
No 26
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.80 E-value=2.1e-18 Score=150.07 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=101.6
Q ss_pred ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (548)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+..+....++|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999875 478999999998643 2578874 68999999999998765544689999999999999
Q ss_pred CCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (548)
Q Consensus 343 dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 394 (548)
|++||++.+++.++..+.....|+++.+.. .......|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888778888885431 123567899999999986
No 27
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=4.5e-19 Score=153.16 Aligned_cols=105 Identities=31% Similarity=0.369 Sum_probs=91.7
Q ss_pred ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEE-e--cCCCCEEEEEEEEc
Q 008950 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV-K--EPESQILQLQVFDW 337 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v-~--~~~~~~L~v~v~d~ 337 (548)
.+.|.|+|++|+||+..+ .|.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 588999999999999999 8999999999997642 3457899999999999999999987 2 33467899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 338 d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
+..+++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999987666667665
No 28
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.79 E-value=1.2e-18 Score=151.53 Aligned_cols=122 Identities=31% Similarity=0.516 Sum_probs=101.3
Q ss_pred ceEEEEEEEEecCccccC-CCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC
Q 008950 263 VGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (548)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999765 4467999999999873 23379999999999999999999987 45789999999999988
Q ss_pred CCCeeEEEEEECcccCCCCceE-EEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950 342 GHDRLGMQLVPLKLLTPHETKE-FTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (548)
Q Consensus 342 ~dd~lG~~~i~l~~l~~~~~~~-~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 394 (548)
+|++||++.+++.++..+.... .+..+. .+++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence 9999999999999999775543 233221 13567899999999987
No 29
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=1.4e-18 Score=150.43 Aligned_cols=115 Identities=34% Similarity=0.500 Sum_probs=100.5
Q ss_pred eEEEEEEEEecCccccCC------CCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEc
Q 008950 264 GILHVKVVRASKLLKKDF------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~------~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 337 (548)
|+|+|+|++|+||+..|. .|.+||||++++++. .++|++++++.||+|||+|.|.+.+...+.|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998874 368999999999874 36999999999999999999999876678999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (548)
Q Consensus 338 d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 392 (548)
+.. +|++||++.++++++..+.....|++|. ....|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence 987 8999999999999998877777888873 2367999998865
No 30
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.79 E-value=4.3e-18 Score=148.17 Aligned_cols=123 Identities=25% Similarity=0.364 Sum_probs=102.4
Q ss_pred CceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC
Q 008950 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (548)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (548)
|.++|+|+|++|++|+..|..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998765 5899999999999999999988764 67899999999876
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950 342 GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (548)
Q Consensus 342 ~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 394 (548)
+|++||++.+++.++.....+++.+. ... ...+++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~~~l~--~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRTLPLR--KRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCceEEEcc--cCC---CCCCCCCCCEEEEEEEEcc
Confidence 58999999999998766555555543 211 1235778999999997765
No 31
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=2e-18 Score=150.49 Aligned_cols=111 Identities=30% Similarity=0.424 Sum_probs=95.2
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCC----CCCCeEEEEEEEccCCccC
Q 008950 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEP----PLHEKIHIEVMSKRTGIRF 503 (548)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~~l~v~V~d~~~~~~~ 503 (548)
++|+|++|+||+.. +.+||||++++++.+++|++++++.||+|||.|.|.+... .....|.++|||++. +
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~---~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL---L 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc---c
Confidence 47999999999753 5799999999999999999999999999999999999772 234689999999974 6
Q ss_pred CCCcceEEEEEechhhh--ccceeceEEEeCCC------CCeEEEEEEE
Q 008950 504 WSKESLGHVEINLTDVV--HNGRINEKYHLINS------KRGVIHVDIR 544 (548)
Q Consensus 504 ~~d~~lG~~~i~L~~l~--~~~~~~~w~~L~~~------~~G~i~l~~~ 544 (548)
+.|++||++.++|+++. .+....+||+|.+. ..|+|+|+++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 78999999999999998 45567899999753 2699999875
No 32
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.78 E-value=1.3e-18 Score=151.16 Aligned_cols=110 Identities=34% Similarity=0.407 Sum_probs=94.0
Q ss_pred ccCCceEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~ 333 (548)
+....+.|.|+|++|+||+..|.. |.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.|+
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 344568999999999999999875 899999999997543 344689999999999999999999863 345689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
|||++..+++++||++.++|.++...+....|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877666667665
No 33
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.78 E-value=2.7e-18 Score=147.83 Aligned_cols=112 Identities=22% Similarity=0.487 Sum_probs=97.4
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccC-CCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 504 (548)
|.|+|+|.+|++|+.. +.+||||++++++..++|+++.+ +.||+|||.|.|.+... ..+.|.++|||++. .+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~---~~ 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK---RK 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC---CC
Confidence 6799999999999863 57999999999998899998765 78999999999999875 45689999999874 33
Q ss_pred CCcceEEEEEechhhhccceeceEEEeCCCC--CeEEEEEEEE
Q 008950 505 SKESLGHVEINLTDVVHNGRINEKYHLINSK--RGVIHVDIRW 545 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~--~G~i~l~~~~ 545 (548)
|++||++.++++++..+....+||+|.+.+ .|+|+|+++|
T Consensus 77 -~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 77 -PDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred -CcceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 899999999999998876778999998653 7999999986
No 34
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=2.3e-18 Score=149.41 Aligned_cols=110 Identities=31% Similarity=0.421 Sum_probs=95.0
Q ss_pred ccCCceEEEEEEEEecCccccCC-CCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~-~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (548)
+....|.|.|+|++|+||+..+. .|.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45667999999999999998875 4789999999997543 3457899999999999999999998642 35689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
|||++..+++++||++.+++.++...+....|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999988777778776
No 35
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.77 E-value=8.1e-18 Score=151.88 Aligned_cols=123 Identities=32% Similarity=0.439 Sum_probs=103.0
Q ss_pred ceEEEEEEEEecCccccC------------------------------CCCCCCcEEEEEEcCcccceeeeeeecCCCCC
Q 008950 263 VGILHVKVVRASKLLKKD------------------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP 312 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d------------------------------~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP 312 (548)
.|.|.|+|.+|++|+.+| ..|.+||||++++++.+. .+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 599999999999999987 246789999999987543 589999999999
Q ss_pred eeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950 313 EWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (548)
Q Consensus 313 ~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 392 (548)
+|||+|.|.+.+. .+.|.|+|||+|..+ +++||++.++++++..+.....|+++.... .+..+..|.|+++++|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~----~~~~~~~~~l~v~~~f 157 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN----GKPPKPGAKIRVSLQF 157 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC----CCCCCCCCEEEEEEEE
Confidence 9999999998654 468999999999775 689999999999999888888899885421 1123457899999998
Q ss_pred E
Q 008950 393 V 393 (548)
Q Consensus 393 ~ 393 (548)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 4
No 36
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.77 E-value=1.1e-17 Score=145.63 Aligned_cols=115 Identities=23% Similarity=0.369 Sum_probs=98.6
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950 428 AGLLSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK 506 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d 506 (548)
...|+|+|++|+||+..+.+||||++.+++.. .+|++ +++.||.|||.|.|.+..+ ..+.+.|.|+|++. .+.|
T Consensus 3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~---~~~d 77 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAK---RSKD 77 (126)
T ss_pred eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCC-CcCEEEEEEEECCC---CCCC
Confidence 35699999999999988889999999998755 58887 4689999999999987654 33579999999875 6789
Q ss_pred cceEEEEEechhhhccceeceEEEeCCCC------CeEEEEEEEEEe
Q 008950 507 ESLGHVEINLTDVVHNGRINEKYHLINSK------RGVIHVDIRWKM 547 (548)
Q Consensus 507 ~~lG~~~i~L~~l~~~~~~~~w~~L~~~~------~G~i~l~~~~~~ 547 (548)
++||++.++|+++..+...+.||+|.+.. .|+|+|+++|.+
T Consensus 78 ~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 78 SEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999999998887788999997542 599999999975
No 37
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.77 E-value=2.8e-18 Score=149.16 Aligned_cols=111 Identities=31% Similarity=0.562 Sum_probs=96.8
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEE
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~ 335 (548)
.+....|.|.|+|++|++|+..+..|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.++||
T Consensus 10 ~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 10 EYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred EECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 34556799999999999999999899999999999965433457999999999999999999998643 3568999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 336 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
|++.+++|++||++.++++++..++....|++|
T Consensus 90 d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 90 DFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred ECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 999999999999999999999977777888876
No 38
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=7.4e-18 Score=144.65 Aligned_cols=112 Identities=21% Similarity=0.354 Sum_probs=100.1
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK 506 (548)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d 506 (548)
+++|+|++|++|+.. +.+||||++++++..++|++++++.||.|||.|.|.+.+. ..+.|.++|||++. .+.|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~---~~~~ 76 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT---GKKD 76 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCC---CCCC
Confidence 478999999999863 5789999999999999999999999999999999999875 45789999999985 6789
Q ss_pred cceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEE
Q 008950 507 ESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWK 546 (548)
Q Consensus 507 ~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~ 546 (548)
++||++.++|+++..+.....||+|.+. .|+|++.++|.
T Consensus 77 ~~iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 77 EFIGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred CeEEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 9999999999999888878899999866 79999999875
No 39
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.77 E-value=4.6e-18 Score=147.52 Aligned_cols=115 Identities=24% Similarity=0.383 Sum_probs=98.3
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC----CCCCCcEEEEEEcC-
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG- 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~----~~~~dpyv~v~l~~- 457 (548)
+|+|++++.|.+. .+.|.|+|++|+||+. .+.+||||++++..
T Consensus 1 ~G~i~~sl~y~~~--------------------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~ 48 (125)
T cd04029 1 SGEILFSLSYDYK--------------------------------TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEECC--------------------------------CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC
Confidence 5999999999863 5789999999999975 25799999999952
Q ss_pred ----eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950 458 ----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532 (548)
Q Consensus 458 ----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~ 532 (548)
.++||++++++.||+|||+|.|.+..... ...|.++|||++. .+.+++||++.++|.++..+.....||+|.
T Consensus 49 ~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~---~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 49 KSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR---FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC---CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 34699999999999999999999875322 3479999999874 678999999999999998888789999984
No 40
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=4.7e-18 Score=146.58 Aligned_cols=115 Identities=26% Similarity=0.356 Sum_probs=96.0
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd 344 (548)
.|.|+|++|+||+.. .+||||++++++.. .+|++++++.||+|||+|.|.+.++....|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 489999999999887 78999999998643 6999999999999999999998776678999999999976 789
Q ss_pred eeEEEEEECcccCCCC-----ceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950 345 RLGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (548)
Q Consensus 345 ~lG~~~i~l~~l~~~~-----~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 393 (548)
+||++.++++++.... ....|++|... .+.+.+|+|++++.|-
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~------~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDK------KGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCC------CCCccceEEEEEEEec
Confidence 9999999999987532 23467776442 1246889999999873
No 41
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=8.3e-18 Score=145.07 Aligned_cols=118 Identities=35% Similarity=0.536 Sum_probs=99.7
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCC
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (548)
|.|.|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999998654 5899999999999999999998653 57899999999988899
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (548)
Q Consensus 344 d~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 392 (548)
++||++.+++.++..+..+ |+.|... ....+..|+|.+++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~~~--~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGERK--WYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCCce--EEECccc-----CCCCceeeEEEEEEEe
Confidence 9999999999999876554 4444321 1124579999999876
No 42
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=7.3e-18 Score=147.39 Aligned_cols=113 Identities=27% Similarity=0.498 Sum_probs=99.2
Q ss_pred eEEEEEEeeeecCCC-----CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccC
Q 008950 429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRF 503 (548)
Q Consensus 429 g~L~V~v~~a~~L~~-----~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 503 (548)
|.|+|+|++|++|+. .+.+||||++.+++..++|++++++.||.|||.|.|.+... ..+.|.|+|||++. .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~---~ 76 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR---F 76 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCC---C
Confidence 689999999999974 35789999999999999999999999999999999999874 45789999999985 5
Q ss_pred CCCcceEEEEEechhhhc---cceeceEEEeCCC-------CCeEEEEEEEE
Q 008950 504 WSKESLGHVEINLTDVVH---NGRINEKYHLINS-------KRGVIHVDIRW 545 (548)
Q Consensus 504 ~~d~~lG~~~i~L~~l~~---~~~~~~w~~L~~~-------~~G~i~l~~~~ 545 (548)
+.+++||++.+++.++.. .+...+||+|.+. .+|+|+|++.|
T Consensus 77 ~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 77 AGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 688999999999999983 3446799999866 38999999998
No 43
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.77 E-value=2e-18 Score=146.81 Aligned_cols=95 Identities=37% Similarity=0.574 Sum_probs=84.5
Q ss_pred eEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC---CCCEEEEEEEEcCC
Q 008950 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~d~ 339 (548)
|+|+|+|++|++|+..|.. |.+||||++++.+.....++|+++++++||+|||+|.|.+... ..+.|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999975443457999999999999999999988643 35689999999999
Q ss_pred CCCCCeeEEEEEECcccCC
Q 008950 340 VGGHDRLGMQLVPLKLLTP 358 (548)
Q Consensus 340 ~~~dd~lG~~~i~l~~l~~ 358 (548)
.++|++||++.++++++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999983
No 44
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.77 E-value=4.9e-18 Score=146.72 Aligned_cols=100 Identities=27% Similarity=0.368 Sum_probs=85.4
Q ss_pred eEEEEEEeeeecCCC--CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEc-cCC-CCCCeEEEEEEEccC
Q 008950 429 GLLSVLVQGAEDVEG--ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFML-DEP-PLHEKIHIEVMSKRT 499 (548)
Q Consensus 429 g~L~V~v~~a~~L~~--~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v-~~~-~~~~~l~v~V~d~~~ 499 (548)
+.|.|+|++|+||+. .+.+||||++++.+ .++||++++++.||+|||+|.|.+ ... .....|.++|||++.
T Consensus 13 ~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~ 92 (122)
T cd08381 13 GTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS 92 (122)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC
Confidence 679999999999976 45799999999963 457999999999999999999987 221 134589999999985
Q ss_pred CccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950 500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHL 531 (548)
Q Consensus 500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L 531 (548)
++++++||++.++|+++..++....||+|
T Consensus 93 ---~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 93 ---LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred ---CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 67899999999999999887777899987
No 45
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=7.1e-18 Score=148.51 Aligned_cols=123 Identities=35% Similarity=0.520 Sum_probs=100.8
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcc----cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~ 340 (548)
.|+|+|++|++|+..|..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+.. ....|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence 489999999999999988999999999997651 234689999999999999999999865 356899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCc------eEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950 341 GGHDRLGMQLVPLKLLTPHET------KEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (548)
Q Consensus 341 ~~dd~lG~~~i~l~~l~~~~~------~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 393 (548)
++|++||++.+++.++..+.. ...|++|.+. ...++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEeeC
Confidence 999999999999999886532 2355665432 11346799999999883
No 46
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=1.2e-17 Score=147.48 Aligned_cols=117 Identities=25% Similarity=0.306 Sum_probs=98.1
Q ss_pred CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC----CCCCcEEEEEE
Q 008950 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILY 455 (548)
Q Consensus 380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dpyv~v~l 455 (548)
....|+|++++.|. .+.|.|+|++|+||... +.+||||++++
T Consensus 14 ~~~~G~l~lsl~y~----------------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~L 59 (146)
T cd04028 14 SPSMGDIQLGLYDK----------------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYL 59 (146)
T ss_pred CCCcceEEEEEEeC----------------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEE
Confidence 45789999999883 36899999999999752 46899999999
Q ss_pred cCe-----EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEE
Q 008950 456 KGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYH 530 (548)
Q Consensus 456 ~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~ 530 (548)
... ++||++++++.||+|||+|.|.+. . .+..|.++||++... +.++++||.+.|+|+++..+.....||+
T Consensus 60 lp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l-~~~~L~v~V~~d~~~--~~~~~~iG~~~i~L~~l~~~~~~~~Wy~ 135 (146)
T cd04028 60 LEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-P-TGKTLQVIVWGDYGR--MDKKVFMGVAQILLDDLDLSNLVIGWYK 135 (146)
T ss_pred ECCCccccceeceecCCCCCCccCCeEEEEEc-C-CCCEEEEEEEeCCCC--CCCCceEEEEEEEcccccCCCCceeEEe
Confidence 542 569999999999999999999998 3 567899999964322 6788999999999999866666789999
Q ss_pred eCCC
Q 008950 531 LINS 534 (548)
Q Consensus 531 L~~~ 534 (548)
|.+.
T Consensus 136 L~~~ 139 (146)
T cd04028 136 LFPT 139 (146)
T ss_pred cCCc
Confidence 9865
No 47
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=8e-18 Score=145.06 Aligned_cols=110 Identities=20% Similarity=0.424 Sum_probs=93.0
Q ss_pred EEEEEEeeeec---CCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCC---
Q 008950 430 LLSVLVQGAED---VEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG--- 500 (548)
Q Consensus 430 ~L~V~v~~a~~---L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~--- 500 (548)
+|+|+|++|++ |+. .+.+||||++++++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 48899999999 654 46899999999999999999999999999999999999874 35899999998741
Q ss_pred ccCCCCcceEEEEEechhhhccceeceEEEeCCC------CCeEEEE
Q 008950 501 IRFWSKESLGHVEINLTDVVHNGRINEKYHLINS------KRGVIHV 541 (548)
Q Consensus 501 ~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l 541 (548)
....+|++||++.++|+++..+....+||+|.+. +.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0014899999999999999988888999999843 3677764
No 48
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.76 E-value=5.8e-18 Score=147.02 Aligned_cols=115 Identities=23% Similarity=0.381 Sum_probs=97.3
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC----CCCCcEEEEEEcC-
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKG- 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dpyv~v~l~~- 457 (548)
+|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++..
T Consensus 1 ~G~i~~sl~y~~~--------------------------------~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~ 48 (125)
T cd08393 1 QGSVQFALDYDPK--------------------------------LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEECC--------------------------------CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC
Confidence 5999999999863 47899999999999762 5799999999953
Q ss_pred ----eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950 458 ----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532 (548)
Q Consensus 458 ----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~ 532 (548)
.+++|++++++.||+|||+|.|.+..... ...|.++|||++. ++++++||++.++|.++..+.....||+|.
T Consensus 49 ~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~---~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 49 KSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS---LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC---CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 34699999999999999999999865322 3589999999874 678999999999999997666678899984
No 49
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=9.2e-18 Score=144.75 Aligned_cols=109 Identities=26% Similarity=0.376 Sum_probs=96.0
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceE
Q 008950 431 LSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLG 510 (548)
Q Consensus 431 L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG 510 (548)
|+|+|++|+||+.. .+||||++.+++...+|++++++.||+|||+|.|.+..+ ....|.++|||++. . .+++||
T Consensus 2 L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~---~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK---A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCC---C-cCceee
Confidence 78999999999987 899999999999889999999999999999999998764 45689999999974 3 789999
Q ss_pred EEEEechhhhccc-----eeceEEEeCCCC----CeEEEEEEEE
Q 008950 511 HVEINLTDVVHNG-----RINEKYHLINSK----RGVIHVDIRW 545 (548)
Q Consensus 511 ~~~i~L~~l~~~~-----~~~~w~~L~~~~----~G~i~l~~~~ 545 (548)
++.++|+++..+. ...+||+|.+.+ .|+|+|+++|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999987532 246899998764 6999999987
No 50
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.76 E-value=1.9e-17 Score=143.19 Aligned_cols=112 Identities=19% Similarity=0.378 Sum_probs=99.1
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC-eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK 506 (548)
Q Consensus 431 L~V~v~~a~~L~~---~~~~dpyv~v~l~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d 506 (548)
|+|+|++|++|+. .+.+||||++++++ ..++|++++++.||+|||.|.|.+.+. .+.+.++|||++. .+.|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~---~~~~ 76 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDR---GLTD 76 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCC---CCCC
Confidence 7899999999986 35899999999987 467999999999999999999998764 4689999999985 5789
Q ss_pred cceEEEEEechhhhccceeceEEEeCCCC----CeEEEEEEEEEe
Q 008950 507 ESLGHVEINLTDVVHNGRINEKYHLINSK----RGVIHVDIRWKM 547 (548)
Q Consensus 507 ~~lG~~~i~L~~l~~~~~~~~w~~L~~~~----~G~i~l~~~~~~ 547 (548)
++||++.++++++..+...+.|++|.+.+ .|+|+|.++++|
T Consensus 77 ~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 77 DFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred cceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 99999999999999887788999998654 699999999876
No 51
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.76 E-value=6.8e-18 Score=146.71 Aligned_cols=110 Identities=35% Similarity=0.456 Sum_probs=95.8
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 336 (548)
+....+.|.|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 4456689999999999999999889999999999976554457999999999999999999998642 35689999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 337 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
++.++++++||++.++++++..+.....|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999877777777775
No 52
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=9.6e-18 Score=148.95 Aligned_cols=123 Identities=28% Similarity=0.363 Sum_probs=95.9
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEe---------------cCCCC
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVK---------------EPESQ 328 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~---------------~~~~~ 328 (548)
|.|+|++|+||+. .+|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7899999999998 46899999999998632 23468999999999999999999995 11235
Q ss_pred EEEEEEEEcCCCCCCCeeEEEEEECcccCCC-CceEEEEeccccccCCC-----CCCCccccEEEEEE
Q 008950 329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISD-----PKDMKQRGKIVVEL 390 (548)
Q Consensus 329 ~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~-----~~~~~~~G~l~l~l 390 (548)
.|.|+|||++..++|++||++.++++++..+ .....|++|....+..+ ..+....|.|++++
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 7999999999888999999999999999986 55667777754433221 11234557777664
No 53
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.75 E-value=2.6e-17 Score=144.73 Aligned_cols=115 Identities=24% Similarity=0.511 Sum_probs=101.1
Q ss_pred CceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccC
Q 008950 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRF 503 (548)
Q Consensus 427 ~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 503 (548)
..|.|+|+|++|++|+. .+.+||||++.++++.++|++++++.||.|||.|.|.+.++ ..+.|.++|||++. +
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~---~ 88 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDF---F 88 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCC---C
Confidence 46999999999999975 35899999999999999999999999999999999999775 45689999999984 6
Q ss_pred CCCcceEEEEEechhhhc-----cceeceEEEeCCCCCeEEEEEEEE
Q 008950 504 WSKESLGHVEINLTDVVH-----NGRINEKYHLINSKRGVIHVDIRW 545 (548)
Q Consensus 504 ~~d~~lG~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~i~l~~~~ 545 (548)
+.|++||++.+++.++.. .....+|.+|.+...|+|+|++.+
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 778999999999999987 334567888877778999999986
No 54
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.75 E-value=1e-17 Score=145.96 Aligned_cols=110 Identities=28% Similarity=0.374 Sum_probs=92.2
Q ss_pred ccCCceEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEE-Ee--cCCCCEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VK--EPESQILQLQV 334 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~--~~~~~~L~v~v 334 (548)
++...+.|.|+|++|+||+..+.. |.+||||++++.+.....+||++++++.||+|||+|.|. +. +.....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 455668999999999999998876 899999999997655455799999999999999999993 43 22345799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCC--CceEEEEec
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDL 368 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~--~~~~~~l~l 368 (548)
||+|..++|++||++.++|+++... +....|+++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9999999999999999999999655 455677776
No 55
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.75 E-value=2.1e-17 Score=145.23 Aligned_cols=116 Identities=28% Similarity=0.440 Sum_probs=100.7
Q ss_pred ceEEEEEEEEecCccccCCC----------CCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEE
Q 008950 263 VGILHVKVVRASKLLKKDFL----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQL 332 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~----------g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v 332 (548)
.|.|+|+|++|++|+..|.. |.+||||+++++++.. .+|++++++.||.|||+|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 48999999999999988863 6799999999987543 58999999999999999999996 3578999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCC--CCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950 333 QVFDWDKVGGHDRLGMQLVPLKLLTP--HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (548)
Q Consensus 333 ~v~d~d~~~~dd~lG~~~i~l~~l~~--~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 394 (548)
.|||++..+++++||++.++|+++.. +.....|++|. ..|+|++++.|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence 99999988899999999999999987 56677888872 4699999998875
No 56
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.75 E-value=5.8e-18 Score=145.89 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=89.6
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc---cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEE
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQL 332 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v 332 (548)
.++...+.|.|+|++|+||+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 3556678999999999999999888899999999998765 2468999999999999999999998642 4679999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCC
Q 008950 333 QVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (548)
Q Consensus 333 ~v~d~d~~~~dd~lG~~~i~l~~l~~~ 359 (548)
+|||++..+++++||++.++|+++...
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~ 114 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESS 114 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCC
Confidence 999999999999999999999999544
No 57
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=1.9e-17 Score=147.86 Aligned_cols=113 Identities=22% Similarity=0.324 Sum_probs=96.4
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccC-CCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC
Q 008950 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS 505 (548)
Q Consensus 430 ~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 505 (548)
.|.|+|++|+||+. .+.+||||+++++++.++|+++.+ +.||+|||.|+|.+.++ ..+.+.++|+|++. .+.
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~---~~~ 76 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG---PNK 76 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC---CCC
Confidence 37899999999965 358999999999999999999876 69999999999999774 44689999999874 567
Q ss_pred CcceEEEEEechhhhcc----ceeceEEEeCCCC-----------CeEEEEEEEEE
Q 008950 506 KESLGHVEINLTDVVHN----GRINEKYHLINSK-----------RGVIHVDIRWK 546 (548)
Q Consensus 506 d~~lG~~~i~L~~l~~~----~~~~~w~~L~~~~-----------~G~i~l~~~~~ 546 (548)
|++||++.++|+++..+ ....+||+|.+.. +|+|+|++.+.
T Consensus 77 dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 77 DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred CCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 89999999999998753 3468999998653 39999999875
No 58
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=2.2e-17 Score=142.66 Aligned_cols=118 Identities=25% Similarity=0.435 Sum_probs=98.2
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~ 345 (548)
|.|+|++|++|++.|..|.+||||++++++... ++|++++++.||.|||.|.|.+.+ ..+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~--~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVI--IRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEee--eeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCE
Confidence 789999999999999999999999999986442 689999999999999999999864 34789999999999999999
Q ss_pred eEEEEEECcccCCC-CceEEEEeccccccCCCCCCCccccEEEEEEE
Q 008950 346 LGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (548)
Q Consensus 346 lG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (548)
||++.+++.++..+ .....|++|... .......|+|++.++
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-----DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-----CCCCccccEEEEEEE
Confidence 99999999888754 235677777432 112457899998874
No 59
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.75 E-value=1.3e-17 Score=143.17 Aligned_cols=102 Identities=20% Similarity=0.328 Sum_probs=85.9
Q ss_pred ceEEEEEEeeeecCCCC--CCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCC
Q 008950 428 AGLLSVLVQGAEDVEGE--NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG 500 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~--~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~ 500 (548)
.+.|.|+|++|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+........+.++|||++..
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 47899999999999763 5789999999964 3569999999999999999999987643445799999998752
Q ss_pred ccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950 501 IRFWSKESLGHVEINLTDVVHNGRINEKYHL 531 (548)
Q Consensus 501 ~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L 531 (548)
..++++||.+.|+|.++..++...+||.|
T Consensus 91 --~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 91 --SRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred --cCCCEEEEEEEecHHHhccCccccceEeC
Confidence 23578999999999999877778899986
No 60
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.75 E-value=3.5e-18 Score=149.78 Aligned_cols=126 Identities=22% Similarity=0.389 Sum_probs=103.5
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC-----CCCCcEEEEEEcC
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE-----NHNNPYAIILYKG 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~-----~~~dpyv~v~l~~ 457 (548)
.|+|.+++.|.|. .+.|.|.|++|+||... +.+||||++++..
T Consensus 1 ~Gel~~sL~Y~~~--------------------------------~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~ 48 (138)
T cd08407 1 TGEVLLSISYLPA--------------------------------ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKH 48 (138)
T ss_pred CCEEEEEEEEeCC--------------------------------CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEc
Confidence 4999999999985 57899999999999753 3489999999865
Q ss_pred e-----EEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950 458 D-----KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL 531 (548)
Q Consensus 458 ~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L 531 (548)
. ++||++++++.||+|||.|.|.+..... +..|.++|||.+. ++++++||++.+++.. .+....+|..+
T Consensus 49 ~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~---~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 49 QNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS---PGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred CCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC---CcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 2 4599999999999999999999976433 3479999999985 6889999999999975 34455788888
Q ss_pred CCCCCeEEEEEEEEEeC
Q 008950 532 INSKRGVIHVDIRWKMI 548 (548)
Q Consensus 532 ~~~~~G~i~l~~~~~~~ 548 (548)
..+++-.|. +|+++
T Consensus 124 l~~p~~~va---~WH~L 137 (138)
T cd08407 124 LDNPRRQIA---MWHQL 137 (138)
T ss_pred HhCCCCchh---EEEEC
Confidence 777666665 77764
No 61
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=3.7e-17 Score=142.53 Aligned_cols=118 Identities=31% Similarity=0.434 Sum_probs=100.0
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd 344 (548)
.|+|+|++|++|+..+..+.+||||++.+.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998765334479999999999999999999997755678999999999888999
Q ss_pred eeEEEEEECcccCC---CCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950 345 RLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (548)
Q Consensus 345 ~lG~~~i~l~~l~~---~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 394 (548)
+||++.++++++.. +.....|+++. ..|++++.+.+.-
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence 99999999987643 34566788762 2689999988764
No 62
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=1.9e-17 Score=144.47 Aligned_cols=113 Identities=27% Similarity=0.429 Sum_probs=96.9
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCC--CCeEEEEEEEccCCccCC-
Q 008950 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL--HEKIHIEVMSKRTGIRFW- 504 (548)
Q Consensus 431 L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~l~v~V~d~~~~~~~~- 504 (548)
|+|+|++|++|+. .+.+||||++++++++++|++++++.||+|||.|.|.+..+.. ...|.++|||++. +.
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~---~~~ 78 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR---SGR 78 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC---CcC
Confidence 7899999999975 3579999999999999999999999999999999999976422 3579999999874 44
Q ss_pred CCcceEEEEEechhhh-ccceeceEEEeCCC-----CCeEEEEEEEEE
Q 008950 505 SKESLGHVEINLTDVV-HNGRINEKYHLINS-----KRGVIHVDIRWK 546 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~-~~~~~~~w~~L~~~-----~~G~i~l~~~~~ 546 (548)
.|++||++.++++++. .+....+||+|... .+|+|+|++.++
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 7899999999999997 44556899999864 389999999875
No 63
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=1.1e-17 Score=140.89 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=82.1
Q ss_pred eEEEEEEEEecCccccCCC----CCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC-CCEEEEEEEEcC
Q 008950 264 GILHVKVVRASKLLKKDFL----GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~----g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d 338 (548)
|+|.|+|++|++|+..+.. +.+||||++++++.. +||++++++.||+|||+|.|.+.+.. ...|.|+|||+|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987642 358999999997644 58999999999999999999986543 457999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCC
Q 008950 339 KVGGHDRLGMQLVPLKLLTPHE 360 (548)
Q Consensus 339 ~~~~dd~lG~~~i~l~~l~~~~ 360 (548)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999998653
No 64
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.74 E-value=1.9e-17 Score=143.95 Aligned_cols=115 Identities=22% Similarity=0.338 Sum_probs=96.2
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC----CCCCcEEEEEEcC-
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKG- 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dpyv~v~l~~- 457 (548)
.|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++..
T Consensus 1 ~G~i~~sl~Y~~~--------------------------------~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~ 48 (128)
T cd08392 1 TGEIEFALHYNFR--------------------------------TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPD 48 (128)
T ss_pred CcEEEEEEEEeCC--------------------------------CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeC
Confidence 4999999999974 57899999999999752 6789999999953
Q ss_pred ----eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhcc---ceeceEE
Q 008950 458 ----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHN---GRINEKY 529 (548)
Q Consensus 458 ----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~---~~~~~w~ 529 (548)
.++||++++++.||+|||+|.|.+..... ...|.+.|||.+. ++++++||++.|+|+++.-. ....+||
T Consensus 49 ~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~---~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~ 125 (128)
T cd08392 49 KSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT---LKRRVFLGEVLIPLADWDFEDTDSQRFLWY 125 (128)
T ss_pred CcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC---CcCcceEEEEEEEcCCcccCCCCccccceE
Confidence 35699999999999999999999866323 3489999999875 67889999999999999442 3668999
Q ss_pred EeC
Q 008950 530 HLI 532 (548)
Q Consensus 530 ~L~ 532 (548)
+|.
T Consensus 126 ~l~ 128 (128)
T cd08392 126 PLN 128 (128)
T ss_pred ECc
Confidence 983
No 65
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.74 E-value=3e-17 Score=141.53 Aligned_cols=110 Identities=22% Similarity=0.426 Sum_probs=96.8
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcC---eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950 431 LSVLVQGAEDVEGE---NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dpyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 504 (548)
|+|+|++|++|+.. +.+||||++++++ ..++|++++++.||+|||+|.|.+... ..+.|.|+|||++. .
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~---~- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDY---V- 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCC---C-
Confidence 78999999999863 5799999999964 457999999999999999999999775 45679999999874 5
Q ss_pred CCcceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEE
Q 008950 505 SKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRW 545 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~ 545 (548)
.|++||++.++++++..+.....||+|.+.+.|++++++..
T Consensus 77 ~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 77 MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred CCcccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 88999999999999988888899999998889999998865
No 66
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=4.8e-17 Score=143.38 Aligned_cols=120 Identities=25% Similarity=0.433 Sum_probs=98.1
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC---------CCCEEEEEEE
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---------ESQILQLQVF 335 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------~~~~L~v~v~ 335 (548)
.|+|+|++|++|+..|..|.+||||++++++.. ++|+++++|.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999998654 6899999999999999999975432 1257999999
Q ss_pred EcCCCCCCCeeEEEEE-ECcccCC---CCceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950 336 DWDKVGGHDRLGMQLV-PLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (548)
Q Consensus 336 d~d~~~~dd~lG~~~i-~l~~l~~---~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 395 (548)
|+|..++|++||++.+ ++..+.. ......|++|.+ .+...|+|.+++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999987 4444432 345567777743 24578999999999875
No 67
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.74 E-value=2.1e-17 Score=142.62 Aligned_cols=106 Identities=29% Similarity=0.421 Sum_probs=90.3
Q ss_pred eeccccccccccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEec-CCC
Q 008950 249 IPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-PES 327 (548)
Q Consensus 249 ~~l~~~~~~~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-~~~ 327 (548)
-|+++..........|.|+|+|++|++|+. +..|.+||||++++++. .++|++++++.||+|||+|.|.... ...
T Consensus 13 ~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~~ 88 (127)
T cd04032 13 SPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSPG 88 (127)
T ss_pred CCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCCC
Confidence 466665554567788999999999999984 66789999999999876 3699999999999999999997533 356
Q ss_pred CEEEEEEEEcCCCCCCCeeEEEEEECcccCC
Q 008950 328 QILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (548)
Q Consensus 328 ~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~ 358 (548)
+.|+|+|||++..++|++||++.+++.....
T Consensus 89 ~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 89 GKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 8999999999999999999999999997663
No 68
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.74 E-value=1.9e-17 Score=144.02 Aligned_cols=101 Identities=30% Similarity=0.354 Sum_probs=87.6
Q ss_pred ccCCceEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (548)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 445568999999999999999875 899999999997654 3356999999999999999999998642 35689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCC
Q 008950 334 VFDWDKVGGHDRLGMQLVPLKLLTPH 359 (548)
Q Consensus 334 v~d~d~~~~dd~lG~~~i~l~~l~~~ 359 (548)
|||.+.++++++||++.|+|+++...
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~ 115 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFE 115 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccC
Confidence 99999999999999999999998654
No 69
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=5.1e-17 Score=141.75 Aligned_cols=117 Identities=32% Similarity=0.460 Sum_probs=100.6
Q ss_pred EEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEEcCCCCCCCeeE
Q 008950 270 VVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGGHDRLG 347 (548)
Q Consensus 270 V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~~dd~lG 347 (548)
|++|++|+. ..|.+||||++++++.+ ++|++++++.||+|||+|.|.+... ..+.|.|+|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 67899999999998754 5899999999999999999999754 4688999999999988999999
Q ss_pred EEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEeccc
Q 008950 348 MQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (548)
Q Consensus 348 ~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 397 (548)
++.++++++..+.....+++|... ......|+|+++++|.|...
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCC
Confidence 999999999988888888888432 12335799999999999754
No 70
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.73 E-value=6.6e-17 Score=140.81 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=97.3
Q ss_pred EEEEEeeeecCCC-CCCCCcEEEEEEcC--eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCc
Q 008950 431 LSVLVQGAEDVEG-ENHNNPYAIILYKG--DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKE 507 (548)
Q Consensus 431 L~V~v~~a~~L~~-~~~~dpyv~v~l~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~ 507 (548)
|.|+|++|+||+. .+.+||||++++++ ++++|++++++.||+|||.|.|.+.. ..+.|.|+|||++. .+.|+
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~---~~~~~ 75 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGK---KSDSK 75 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCC---CCCCc
Confidence 5789999999976 35799999999974 56799999999999999999999864 35689999999985 56799
Q ss_pred ceEEEEEechhhhccceeceEEEeCCC------CCeEEEEEEEEEe
Q 008950 508 SLGHVEINLTDVVHNGRINEKYHLINS------KRGVIHVDIRWKM 547 (548)
Q Consensus 508 ~lG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~~ 547 (548)
+||++.++++++.......+||+|... ..|+|+++++|.+
T Consensus 76 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 76 FLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred eEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 999999999999988777899999754 4899999999964
No 71
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.73 E-value=4.9e-17 Score=140.87 Aligned_cols=118 Identities=36% Similarity=0.552 Sum_probs=95.6
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC--C
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG--H 343 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~--d 343 (548)
|+|+|++|++|+..+..+.+||||++++++.. .++|++++++.||.|||+|.|.+.. .+.|.|+|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQ--THSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCcc--ceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 78999999999999988999999999997532 3689999999999999999999965 6799999999998765 5
Q ss_pred CeeEEEEEECcccCCCC-ceEEEEeccccccCCCCCCCccccEEEEEE
Q 008950 344 DRLGMQLVPLKLLTPHE-TKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (548)
Q Consensus 344 d~lG~~~i~l~~l~~~~-~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 390 (548)
++||++.++++++.... ....|+++.+.. + ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~-~--~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLK-K--SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecCC-C--CCCceEeeEEEEEe
Confidence 79999999999987654 334566663321 1 12356689998876
No 72
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.73 E-value=3.7e-17 Score=142.27 Aligned_cols=111 Identities=38% Similarity=0.556 Sum_probs=95.1
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEec---CCCCEEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF 335 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~ 335 (548)
+....+.|.|+|++|+||+..+..+.+||||++++.+.....++|++++++.||.|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 455678999999999999999988999999999996543345799999999999999999997532 23467999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (548)
Q Consensus 336 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~ 369 (548)
|++..+++++||++.++++++..+.....|+.|.
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999999999999999999999887778888763
No 73
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=4.4e-17 Score=138.56 Aligned_cols=104 Identities=26% Similarity=0.361 Sum_probs=89.0
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcc
Q 008950 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKES 508 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~ 508 (548)
+.|.|+|.+|++|+..+..||||++.+++.+.+|++.++ .||.|||.|.|.+.+. +..|.|+|||++ ...|++
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd----~~~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKG----LIWDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCC----CcCCCc
Confidence 579999999999998888899999999998889999988 5999999999999764 345999999987 348999
Q ss_pred eEEEEEechhhhccce--eceEEEeCCC---CCeEE
Q 008950 509 LGHVEINLTDVVHNGR--INEKYHLINS---KRGVI 539 (548)
Q Consensus 509 lG~~~i~L~~l~~~~~--~~~w~~L~~~---~~G~i 539 (548)
||++.|+|+++..+.. ..+||+|... ++|++
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~ 110 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQI 110 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecChHHhccCCeE
Confidence 9999999999987643 3799999743 45554
No 74
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.73 E-value=3.6e-17 Score=141.81 Aligned_cols=110 Identities=27% Similarity=0.356 Sum_probs=95.8
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEE-Eec--CCCCEEEEEE
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VKE--PESQILQLQV 334 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~v 334 (548)
.++...+.|.|+|++|+||+..+..|.+||||++.+.+....+++|+++++ .||+|||+|.|. +.. .....|.++|
T Consensus 10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 10 EYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred EECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 355667899999999999999998899999999998776556679999887 999999999998 542 2467899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
||++..+++++||++.++|+++..++....|++|
T Consensus 89 ~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 89 YGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred EECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 9999999999999999999999888888888876
No 75
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.73 E-value=7.7e-17 Score=138.99 Aligned_cols=110 Identities=17% Similarity=0.321 Sum_probs=95.1
Q ss_pred EEEEEeeeecCCCC----CCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC
Q 008950 431 LSVLVQGAEDVEGE----NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS 505 (548)
Q Consensus 431 L~V~v~~a~~L~~~----~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 505 (548)
|.|.|.+|+||+.. +.+||||++.++++ .++|+++++|.||.|||+|.|.+.+. ...|.+.|||++. ++.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~---~~~ 76 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDV---LRR 76 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCC---CCC
Confidence 67899999999863 46899999999775 46999999999999999999999763 4689999999985 678
Q ss_pred CcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEE
Q 008950 506 KESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDIRW 545 (548)
Q Consensus 506 d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 545 (548)
|++||.+.++++++..+...+.||+|... ..|+|+|++++
T Consensus 77 ~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 77 DSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999999999877777899999753 27999999864
No 76
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.73 E-value=5e-17 Score=141.23 Aligned_cols=115 Identities=23% Similarity=0.405 Sum_probs=98.7
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--- 456 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~--- 456 (548)
+|+|++++.|.+. .+.|.|+|++|+||+. .+.+||||++++.
T Consensus 2 ~G~l~~sl~y~~~--------------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~ 49 (124)
T cd08387 2 RGELHFSLEYDKD--------------------------------MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR 49 (124)
T ss_pred CCEEEEEEEECCC--------------------------------CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC
Confidence 6999999999863 5789999999999976 3579999999994
Q ss_pred CeEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950 457 GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532 (548)
Q Consensus 457 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~ 532 (548)
...++|++++++.||+|||+|.|.+..... ...|.++|||++. ++.+++||++.++|+++..++....||+|.
T Consensus 50 ~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~---~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 50 SNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ---FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC---CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 245799999999999999999999875322 3489999999974 678999999999999998777788999986
No 77
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.73 E-value=5.6e-17 Score=136.45 Aligned_cols=98 Identities=24% Similarity=0.527 Sum_probs=86.9
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCc
Q 008950 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKE 507 (548)
Q Consensus 431 L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~ 507 (548)
|.|+|++|++|+. .+.+||||+++++++.++|++++++.||+|||.|.|.+.++ ..+.|.|+|+|++. ++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~------~~ 74 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT------GK 74 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC------CC
Confidence 7899999999986 35899999999999999999999999999999999999885 45689999999862 78
Q ss_pred ceEEEEEechhhhccc--eeceEEEeCCCC
Q 008950 508 SLGHVEINLTDVVHNG--RINEKYHLINSK 535 (548)
Q Consensus 508 ~lG~~~i~L~~l~~~~--~~~~w~~L~~~~ 535 (548)
+||++.++|.++.... ..++||+|.+.+
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 9999999999998754 678999998653
No 78
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.73 E-value=1.8e-17 Score=143.08 Aligned_cols=126 Identities=13% Similarity=0.262 Sum_probs=102.1
Q ss_pred cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC---
Q 008950 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG--- 457 (548)
Q Consensus 384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~--- 457 (548)
.+|.++++|.|. .|.|+|+|++|+||+.. +.+||||++++..
T Consensus 1 ~el~~sL~Y~p~--------------------------------~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k 48 (135)
T cd08692 1 AELQLGTCFQAV--------------------------------NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGG 48 (135)
T ss_pred CeEEEEeeecCc--------------------------------CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCC
Confidence 378999999985 68899999999999874 3569999999843
Q ss_pred --eEEEeeeccCCC-CCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950 458 --DKKRTKMIRKTR-DPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS 534 (548)
Q Consensus 458 --~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~ 534 (548)
+++||+++++|. ||+|||+|.|.+.....+-.+.|+|||++. .+++++||++.++.++. .....++|..+..+
T Consensus 49 ~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~---~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~ 124 (135)
T cd08692 49 LLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS---VRRKHFLGQVWISSDSS-SSEAVEQWKDTIAN 124 (135)
T ss_pred cceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC---CcCCceEEEEEECCccC-CchhhhhHHHHHhC
Confidence 356999999995 699999999999875333378889999874 67899999999999863 23345799999888
Q ss_pred CCeEEEEEEEEEeC
Q 008950 535 KRGVIHVDIRWKMI 548 (548)
Q Consensus 535 ~~G~i~l~~~~~~~ 548 (548)
++-.|. +|+++
T Consensus 125 pr~~ia---~WH~L 135 (135)
T cd08692 125 PEKVVT---KWHSL 135 (135)
T ss_pred CCCeee---EeecC
Confidence 777776 88875
No 79
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.73 E-value=1.1e-17 Score=146.68 Aligned_cols=125 Identities=23% Similarity=0.386 Sum_probs=102.2
Q ss_pred cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 008950 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-- 458 (548)
Q Consensus 384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~-- 458 (548)
|+|.++++|.|. .+.|.|+|++|+||+. .+.+||||++++...
T Consensus 2 G~i~~sL~Y~~~--------------------------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~ 49 (136)
T cd08406 2 GEILLSLSYLPT--------------------------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGR 49 (136)
T ss_pred cEEEEEEEEcCC--------------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCc
Confidence 899999999975 4679999999999986 357899999999432
Q ss_pred ---EEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950 459 ---KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS 534 (548)
Q Consensus 459 ---~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~ 534 (548)
++||++++++.||+|||+|.|.+..... +..|.|+|+|++. ++++++||++.|+... .+....+|+.+..+
T Consensus 50 ~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~---~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~ 124 (136)
T cd08406 50 KISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE---DGKTPNVGHVIIGPAA--SGMGLSHWNQMLAS 124 (136)
T ss_pred cccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC---CCCCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence 4589999999999999999999876432 3479999999985 6789999999998764 34456789998888
Q ss_pred CCeEEEEEEEEEeC
Q 008950 535 KRGVIHVDIRWKMI 548 (548)
Q Consensus 535 ~~G~i~l~~~~~~~ 548 (548)
++-.|. +|+.+
T Consensus 125 ~~~~v~---~WH~l 135 (136)
T cd08406 125 LRKPVA---MWHPL 135 (136)
T ss_pred CCCeee---Eeeec
Confidence 766555 78764
No 80
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.72 E-value=1.5e-16 Score=139.75 Aligned_cols=112 Identities=23% Similarity=0.393 Sum_probs=97.6
Q ss_pred ceEEEEEEeeeecCCCC-------------CCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEEE
Q 008950 428 AGLLSVLVQGAEDVEGE-------------NHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~-------------~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 493 (548)
.|.|+|+|++|++|... +.+||||++.++++. .+|++++++.||.|||+|+|.+.+ ...+.|+
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence 58999999999999652 358999999999876 599999999999999999999964 3689999
Q ss_pred EEEccCCccCCCCcceEEEEEechhhhc--cceeceEEEeCCCCCeEEEEEEEEEe
Q 008950 494 VMSKRTGIRFWSKESLGHVEINLTDVVH--NGRINEKYHLINSKRGVIHVDIRWKM 547 (548)
Q Consensus 494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~--~~~~~~w~~L~~~~~G~i~l~~~~~~ 547 (548)
|+|++. .+.+++||++.++|+++.. +...+.||+|. ++|+|+|+++|+.
T Consensus 80 v~d~~~---~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~ 130 (132)
T cd04014 80 VFHDAA---IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG 130 (132)
T ss_pred EEeCCC---CCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence 999874 5678999999999999987 45668999997 6899999999974
No 81
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.72 E-value=2.1e-17 Score=141.92 Aligned_cols=105 Identities=24% Similarity=0.267 Sum_probs=87.4
Q ss_pred CceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCC-CCEEEEEEEEcC
Q 008950 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (548)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d 338 (548)
..+.|.|+|++|+||+..+ .|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.... ...|.|+|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4589999999999999998 8899999999998643 23468999999999999999999986422 357899999998
Q ss_pred CCC-CCCeeEEEEEECcccCCCCceEEEEe
Q 008950 339 KVG-GHDRLGMQLVPLKLLTPHETKEFTLD 367 (548)
Q Consensus 339 ~~~-~dd~lG~~~i~l~~l~~~~~~~~~l~ 367 (548)
... ++++||++.+++.++..++....|+.
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~ 118 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYY 118 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEe
Confidence 765 47899999999999986655555554
No 82
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.72 E-value=4.4e-17 Score=137.08 Aligned_cols=99 Identities=30% Similarity=0.451 Sum_probs=87.1
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd 344 (548)
.|.|+|++|++|+..+..+.+||||+++++++. ++|++++++.||.|||+|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT---QKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEE---EeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 378999999999999888999999999999743 689999999999999999999988777899999999985 78
Q ss_pred eeEEEEEECcccCCCC--ceEEEEecc
Q 008950 345 RLGMQLVPLKLLTPHE--TKEFTLDLL 369 (548)
Q Consensus 345 ~lG~~~i~l~~l~~~~--~~~~~l~l~ 369 (548)
+||++.+++.++.... ....|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999999999998654 455677763
No 83
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.72 E-value=4.6e-17 Score=141.26 Aligned_cols=110 Identities=31% Similarity=0.414 Sum_probs=92.5
Q ss_pred ccCCceEEEEEEEEecCccccC-CCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (548)
++...+.|.|+|++|+||+..+ ..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4556799999999999999988 77899999999996432 2457899999999999999999998642 25689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
|||++..+++++||++.++++++..+.....|++|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999999999999999999766555666653
No 84
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.71 E-value=6.6e-17 Score=141.14 Aligned_cols=110 Identities=30% Similarity=0.338 Sum_probs=93.8
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 334 (548)
+....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 445678999999999999999988999999999997532 3457999999999999999999998532 357899999
Q ss_pred EEcCCC--CCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 335 FDWDKV--GGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 335 ~d~d~~--~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
||++.. +++++||++.+++.++..++....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999877766777765
No 85
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.71 E-value=6.7e-17 Score=139.30 Aligned_cols=101 Identities=21% Similarity=0.310 Sum_probs=84.6
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEcC------eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEc
Q 008950 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYKG------DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK 497 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~ 497 (548)
.+.|.|+|++|+||+. .+.+||||++++.. .+++|++++++.||+|||+|+|.+..... +..|.++||+.
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~ 92 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSV 92 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeC
Confidence 5789999999999976 45799999999842 35799999999999999999999875433 34899999998
Q ss_pred cCCccCCCCcceEEEEEechhhhcc-ceeceEEEe
Q 008950 498 RTGIRFWSKESLGHVEINLTDVVHN-GRINEKYHL 531 (548)
Q Consensus 498 ~~~~~~~~d~~lG~~~i~L~~l~~~-~~~~~w~~L 531 (548)
+. .+++++||.+.++|+++... +...+||+|
T Consensus 93 ~~---~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 93 GP---DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CC---CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 74 67899999999999999444 456789976
No 86
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=1.1e-16 Score=139.39 Aligned_cols=114 Identities=27% Similarity=0.399 Sum_probs=94.1
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~-- 457 (548)
.|+|.+++.|.+. .+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~~~~~--------------------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~ 49 (125)
T cd04031 2 TGRIQIQLWYDKV--------------------------------TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDR 49 (125)
T ss_pred cEEEEEEEEEeCC--------------------------------CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCC
Confidence 5999999999874 5789999999999976 35799999999965
Q ss_pred ---eEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532 (548)
Q Consensus 458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~ 532 (548)
..++|++++++.||+|||+|.|.+.... ....|.++|||++. .+.+++||++.++|++... ....+||+|+
T Consensus 50 ~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~---~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 50 SEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR---DGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred CccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC---CCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 4569999999999999999999864421 23589999999985 5788999999999998433 3346899984
No 87
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.71 E-value=1e-16 Score=139.06 Aligned_cols=111 Identities=28% Similarity=0.382 Sum_probs=96.0
Q ss_pred cccCCceEEEEEEEEecCccccC-CCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950 258 AIKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 334 (548)
.++...+.|.|+|++|+||+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 35566789999999999999998 678999999999965433457899999999999999999998643 245899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
||++..+++++||++.++|+++........|++|
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 9999988899999999999999988888888876
No 88
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.71 E-value=9.5e-17 Score=140.12 Aligned_cols=118 Identities=19% Similarity=0.339 Sum_probs=98.4
Q ss_pred cccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc--
Q 008950 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK-- 456 (548)
Q Consensus 382 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~-- 456 (548)
+.|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.
T Consensus 1 ~~G~l~~~l~y~~~--------------------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~ 48 (127)
T cd04030 1 PLGRIQLTIRYSSQ--------------------------------RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD 48 (127)
T ss_pred CCeEEEEEEEEeCC--------------------------------CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC
Confidence 36999999999964 57899999999999863 579999999995
Q ss_pred ---CeEEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950 457 ---GDKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532 (548)
Q Consensus 457 ---~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~ 532 (548)
...++|++++++.||+|||+|.|.+.... ....|.+.|||++.. ..+.+++||++.++|.++..+....+||+|.
T Consensus 49 ~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~-~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 49 KSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF-LSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcc-cCCCCceEEEEEEecccccccCCccceEECc
Confidence 35679999999999999999999986532 235899999998741 0157899999999999998777778999984
No 89
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=1.1e-16 Score=135.97 Aligned_cols=99 Identities=24% Similarity=0.485 Sum_probs=87.7
Q ss_pred CCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhcc-
Q 008950 445 NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHN- 522 (548)
Q Consensus 445 ~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~- 522 (548)
|.+||||+++++++ .++|++++++.||+|||.|.|.+.+. ..+.|.|+|+|++. + +|++||++.++|++++..
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~---~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD---R-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCC---C-CCCeEEEEEecHHHHHhhh
Confidence 57899999999885 46999999999999999999999875 45689999999884 5 899999999999999764
Q ss_pred ceeceEEEeCCCCCeEEEEEEEEEeC
Q 008950 523 GRINEKYHLINSKRGVIHVDIRWKMI 548 (548)
Q Consensus 523 ~~~~~w~~L~~~~~G~i~l~~~~~~~ 548 (548)
....+||+|.+.+.|+|+|+++|+|+
T Consensus 86 ~~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECCCCCCCEEEEEEEEecC
Confidence 44579999998889999999999996
No 90
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.71 E-value=1.9e-16 Score=142.91 Aligned_cols=113 Identities=20% Similarity=0.433 Sum_probs=96.8
Q ss_pred ceEEEEEEeeeecCCCC---------------------------------CCCCcEEEEEEcCeE-EEeeeccCCCCCcc
Q 008950 428 AGLLSVLVQGAEDVEGE---------------------------------NHNNPYAIILYKGDK-KRTKMIRKTRDPAW 473 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---------------------------------~~~dpyv~v~l~~~~-~kT~v~~~t~nP~w 473 (548)
-|.|.|+|++|++|+.. +.+||||++.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 48899999999999742 347999999999866 49999999999999
Q ss_pred CceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC------CCeEEEEEEEEE
Q 008950 474 NEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS------KRGVIHVDIRWK 546 (548)
Q Consensus 474 ne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~ 546 (548)
||+|.|.+... .+.|.++|+|++. + ++++||++.++++++..+...++||+|.+. +.|+|+++++|.
T Consensus 86 nE~F~~~~~~~--~~~l~~~V~d~d~---~-~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAHY--ASHVEFTVKDNDV---V-GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccCC--CCEEEEEEEeCCC---c-CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999998764 3579999999874 3 568999999999999988788899999764 268999999984
No 91
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.71 E-value=1.2e-16 Score=138.96 Aligned_cols=115 Identities=26% Similarity=0.332 Sum_probs=98.1
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~-- 457 (548)
.|+|.+++.|.+. .+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~ 49 (124)
T cd08385 2 LGKLQFSLDYDFQ--------------------------------SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK 49 (124)
T ss_pred ccEEEEEEEEeCC--------------------------------CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC
Confidence 5999999999864 5789999999999986 35789999999853
Q ss_pred -eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950 458 -DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532 (548)
Q Consensus 458 -~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~ 532 (548)
..++|++++++.||+|||+|.|.+..... ...|.|+|||++. ++.+++||++.++|+++..+....+||+|.
T Consensus 50 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~---~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 50 KKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR---FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC---CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 35699999999999999999999865322 3579999999974 678899999999999997777778999986
No 92
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=8.4e-17 Score=140.06 Aligned_cols=109 Identities=29% Similarity=0.433 Sum_probs=88.9
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC---CCCEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQ 333 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~ 333 (548)
++...|.|.|+|++|++|+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 445568999999999999999988999999999997532 2346899999999999999999986432 35789999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
|||++..+++++||++.+++++... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999998899999999999998332 223455554
No 93
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.71 E-value=1.5e-16 Score=144.14 Aligned_cols=128 Identities=21% Similarity=0.358 Sum_probs=100.5
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc---
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--- 456 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~--- 456 (548)
+|+|.+++.|.|...+... .......|.|.|+|++|+||+.. +.+||||++++.
T Consensus 1 ~G~l~~~l~y~~~~~~~~~--------------------~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~ 60 (162)
T cd04020 1 RGELKVALKYVPPESEGAL--------------------KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDK 60 (162)
T ss_pred CceEEEEEEecCccccccc--------------------cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCC
Confidence 5999999999997543211 11223579999999999999863 579999999983
Q ss_pred --CeEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950 457 --GDKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532 (548)
Q Consensus 457 --~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~ 532 (548)
...++|++++++.||.|||.|.|.+.... .+..|.|+|||++. ++.+++||++.+++.++...+....||.+.
T Consensus 61 ~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~---~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 61 SKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK---LSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred CCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC---CCCCceEEEEEEeCCccccCCCccccccCC
Confidence 24579999999999999999999864321 23479999999985 677999999999999987665556777765
Q ss_pred C
Q 008950 533 N 533 (548)
Q Consensus 533 ~ 533 (548)
+
T Consensus 138 ~ 138 (162)
T cd04020 138 G 138 (162)
T ss_pred h
Confidence 4
No 94
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.70 E-value=3.5e-16 Score=139.11 Aligned_cols=125 Identities=23% Similarity=0.233 Sum_probs=97.6
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEE--cCcccceeeeeeecCCCCCeeeceEEEEEecCC--------CCEEEEE
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--------SQILQLQ 333 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--------~~~L~v~ 333 (548)
|.|.|....+.+|++.+..+.+||||++++ .+....+.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 444444444444778887889999999997 333445679999999999999999999996431 4579999
Q ss_pred EEEcCCC-CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950 334 VFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (548)
Q Consensus 334 v~d~d~~-~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 395 (548)
|||++.+ ++|++||++.++|+.+..+.....+++|... .....|.|+++++....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecCC
Confidence 9999876 5799999999999999877666668887532 24577899999987643
No 95
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.70 E-value=2.1e-16 Score=137.77 Aligned_cols=115 Identities=32% Similarity=0.509 Sum_probs=94.0
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC----
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV---- 340 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~---- 340 (548)
.|+|+|++|++|+..|..|.+||||++++++.. ++|++++++.||.|||+|.|.+..+ ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999997543 6899999999999999999998654 56899999999853
Q ss_pred -------CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEE
Q 008950 341 -------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (548)
Q Consensus 341 -------~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 390 (548)
+.+++||++.+++.++.... ..|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCCC--CeEEECccCC-----CCCcEeEEEEEEC
Confidence 46899999999999886543 4566664321 2346799999864
No 96
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.70 E-value=4e-17 Score=144.06 Aligned_cols=128 Identities=22% Similarity=0.389 Sum_probs=105.6
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC--CCCCcEEEEEEcC---
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE--NHNNPYAIILYKG--- 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~--~~~dpyv~v~l~~--- 457 (548)
.|+|++++.|.|. .+.|.|+|++|+||+.. +.+||||++++.+
T Consensus 1 ~G~i~~sl~y~~~--------------------------------~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~ 48 (137)
T cd08409 1 LGDIQISLTYNPT--------------------------------LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNK 48 (137)
T ss_pred CcEEEEEEEECCC--------------------------------CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCE
Confidence 3899999999974 46899999999999753 5689999999854
Q ss_pred --eEEEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950 458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS 534 (548)
Q Consensus 458 --~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~ 534 (548)
++++|++++++.||+|||.|.|.+...... ..|.++||+++. .+.+++||++.++....-.+....+|+.+..+
T Consensus 49 ~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~---~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 49 VVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG---VRKSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred EeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC---CCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 356999999999999999999999754333 489999999985 67889999999997665555667899999888
Q ss_pred CCeEEEEEEEEEeC
Q 008950 535 KRGVIHVDIRWKMI 548 (548)
Q Consensus 535 ~~G~i~l~~~~~~~ 548 (548)
+...|. +|+.|
T Consensus 126 p~~~i~---~WH~l 136 (137)
T cd08409 126 PKELIK---RWHAL 136 (137)
T ss_pred CCCcee---EEEeC
Confidence 776665 88865
No 97
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=2.3e-16 Score=135.21 Aligned_cols=113 Identities=42% Similarity=0.633 Sum_probs=97.3
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~ 345 (548)
|+|+|++|++|+..+..+.+||||++.+++.. .++|+++.++.||.|||+|.|.+.+...+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999999888899999999997643 3689999999999999999999976567889999999999889999
Q ss_pred eEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEE
Q 008950 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIV 387 (548)
Q Consensus 346 lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~ 387 (548)
||++.+++.++..+.....+++|.. .++...|.|.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~-------~g~~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDG-------QGGGKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcC-------CCCccCceEE
Confidence 9999999999998888888888843 2345566654
No 98
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.70 E-value=1.2e-16 Score=142.44 Aligned_cols=105 Identities=36% Similarity=0.550 Sum_probs=89.6
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCccc--------------------------ceeeeeeecCCCC
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--------------------------PWKKTTVKKKNLN 311 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~--------------------------~~~~T~v~~~t~n 311 (548)
...++.+.|.|+|++|++|...|..|.+||||++.+.+... ..++|++++++.|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 56778999999999999999999999999999999964311 2368999999999
Q ss_pred CeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 008950 312 PEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (548)
Q Consensus 312 P~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~ 367 (548)
|.|||+|.|.+.+...+.|.|+|||++ |++||++.++++++... ....|++
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-~~d~W~~ 152 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-GLDSWFK 152 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-CCCCeEe
Confidence 999999999998766789999999997 88999999999999833 3455554
No 99
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=5.9e-17 Score=142.10 Aligned_cols=108 Identities=25% Similarity=0.275 Sum_probs=88.5
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v 334 (548)
+....+.|.|+|++|+||+..+..|.+||||++++.+. +..++||++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 45566899999999999999998899999999999654 3335689999999999999999999864 3467899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
||+|..+++++||++.++.... ++..+.|.++
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~m 121 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQM 121 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHH
Confidence 9999999999999999977643 3334444443
No 100
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.70 E-value=3.4e-16 Score=135.75 Aligned_cols=111 Identities=23% Similarity=0.428 Sum_probs=95.6
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK 506 (548)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d 506 (548)
.|+|+|++|++|+.. +.+||||++++++..++|++++++.||.|||+|.|.+... ....|.|+|||++. .+.+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~---~~~~ 76 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDL---VSKN 76 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCC---CCCC
Confidence 378999999999763 4789999999999889999999999999999999999875 35689999999874 6778
Q ss_pred cceEEEEEechhhhccceeceEEEeCCC---------CCeEEEEEEE
Q 008950 507 ESLGHVEINLTDVVHNGRINEKYHLINS---------KRGVIHVDIR 544 (548)
Q Consensus 507 ~~lG~~~i~L~~l~~~~~~~~w~~L~~~---------~~G~i~l~~~ 544 (548)
++||++.++|+++........||.|... ..|.|++.++
T Consensus 77 ~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 77 DFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred cEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 9999999999999876667899999752 2688888763
No 101
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.5e-16 Score=136.84 Aligned_cols=114 Identities=23% Similarity=0.459 Sum_probs=96.6
Q ss_pred eEEEEEEeeeecCCCC----CCCCcEEEEEEcC--eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCcc
Q 008950 429 GLLSVLVQGAEDVEGE----NHNNPYAIILYKG--DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIR 502 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~----~~~dpyv~v~l~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~ 502 (548)
|.|+|+|++|++|+.. +.+||||++++++ ..++|++++++.||.|||.|.|.+.. ..+.|.++|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~--- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFND--- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCC---
Confidence 7899999999999852 3689999999988 67899999999999999999999874 46789999999985
Q ss_pred CCCCcceEEEEEechhhhccceece-EEEeCC--CCCeEEEEEEEEEe
Q 008950 503 FWSKESLGHVEINLTDVVHNGRINE-KYHLIN--SKRGVIHVDIRWKM 547 (548)
Q Consensus 503 ~~~d~~lG~~~i~L~~l~~~~~~~~-w~~L~~--~~~G~i~l~~~~~~ 547 (548)
.+.|++||++.++|.++........ ++.+.. ...|+|+++++|.|
T Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 5689999999999999998765543 444433 34899999999987
No 102
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=4.8e-16 Score=135.60 Aligned_cols=111 Identities=23% Similarity=0.466 Sum_probs=97.3
Q ss_pred EeeeecCCC-CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEE
Q 008950 435 VQGAEDVEG-ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHV 512 (548)
Q Consensus 435 v~~a~~L~~-~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~ 512 (548)
|.+|++|+. .+.+||||++++++.+++|++++++.||+|||.|.|.+.... ..+.|.++|||++. .+.|++||++
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~---~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK---VGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC---CCCCceEEEE
Confidence 678999987 567999999999999999999999999999999999997642 35689999999975 5678999999
Q ss_pred EEechhhhccceeceEEEeCCC----CCeEEEEEEEEEeC
Q 008950 513 EINLTDVVHNGRINEKYHLINS----KRGVIHVDIRWKMI 548 (548)
Q Consensus 513 ~i~L~~l~~~~~~~~w~~L~~~----~~G~i~l~~~~~~~ 548 (548)
.++++++..+.....|++|.+. ..|+|+++++|.|.
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 9999999988888899999744 26899999999874
No 103
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.69 E-value=7.2e-17 Score=141.46 Aligned_cols=108 Identities=25% Similarity=0.314 Sum_probs=88.8
Q ss_pred ccCCceEEEEEEEEecCccccCC--CCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQL 332 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~--~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v 332 (548)
+....|.|.|+|++|+||+..|. .+.+||||++++.++ +..++||++++++.||+|||+|.|.+... ....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 44566899999999999999983 355999999999864 34467999999999999999999998642 3678999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 333 ~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
+|||+|.++++++||++.+++.. .++...+|.++
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 99999999999999999999975 34444455544
No 104
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.69 E-value=1.2e-16 Score=135.64 Aligned_cols=100 Identities=30% Similarity=0.423 Sum_probs=85.6
Q ss_pred EEEEEEEecCccccCC-CCCCCcEEEEEEcCcccceeeeeeecCCCCCee-eceEEEEEecC--CCCEEEEEEEEcCCCC
Q 008950 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW-NENFKLVVKEP--ESQILQLQVFDWDKVG 341 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~-~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~--~~~~L~v~v~d~d~~~ 341 (548)
|.|+|++|++|+..+. .|.+||||++++++. .++|++++++.||.| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999999884 688999999999873 368999999999999 99999999753 2468999999999999
Q ss_pred CCCeeEEEEEECcccCCC---CceEEEEec
Q 008950 342 GHDRLGMQLVPLKLLTPH---ETKEFTLDL 368 (548)
Q Consensus 342 ~dd~lG~~~i~l~~l~~~---~~~~~~l~l 368 (548)
+|++||++.++++++... .....|++|
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l 107 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPI 107 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEc
Confidence 999999999999999873 234456665
No 105
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=2.9e-16 Score=134.19 Aligned_cols=102 Identities=25% Similarity=0.297 Sum_probs=85.5
Q ss_pred EEEEEEeeeecCCCC--CCCCcEEEEEEcC-------eEEEeeeccCCCCCccCceEEEEccCC--CCCCeEEEEEEEcc
Q 008950 430 LLSVLVQGAEDVEGE--NHNNPYAIILYKG-------DKKRTKMIRKTRDPAWNEEFQFMLDEP--PLHEKIHIEVMSKR 498 (548)
Q Consensus 430 ~L~V~v~~a~~L~~~--~~~dpyv~v~l~~-------~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~ 498 (548)
.|+|+|++|++|+.. |.+||||++++.+ ++++|+++.++.||+|||+|+|.+... .....|.++|+|++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 378999999999874 6789999999842 235899999999999999999999753 12347999999987
Q ss_pred CCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950 499 TGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS 534 (548)
Q Consensus 499 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~ 534 (548)
. .+.+++||++.++|+++..++....|++|...
T Consensus 81 ~---~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 81 F---ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred c---cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 3 56789999999999999988888899999654
No 106
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.69 E-value=1.4e-16 Score=138.34 Aligned_cols=103 Identities=36% Similarity=0.562 Sum_probs=89.8
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeec-CCCCCeeeceEEEEEecC---CCCEEEEEEEEcCC
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~d~ 339 (548)
|.|.|+|++|++|+..+..+.+||||+++++++. ++|++.+ ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999999888999999999998654 4777776 489999999999999875 25789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (548)
Q Consensus 340 ~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~ 369 (548)
.++|++||++.+++.++..++....|+.+.
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 889999999999999998776666676663
No 107
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.69 E-value=1.5e-16 Score=138.52 Aligned_cols=115 Identities=22% Similarity=0.347 Sum_probs=95.6
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeec-CCCCCeeeceEEEEEecCC----CCEEEEEEEEcCC
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK 339 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~d~ 339 (548)
.|+|+|++|++|+..+..+.+||||++++++.. .++|++.. ++.||.|||.|.|.+.+.. ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 379999999999999888999999999998722 25888864 6899999999999997653 6789999999998
Q ss_pred CCCCCeeEEEEEECcccCCCCc-----eEEEEeccccccCCCCCCCccccEEEE
Q 008950 340 VGGHDRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVV 388 (548)
Q Consensus 340 ~~~dd~lG~~~i~l~~l~~~~~-----~~~~l~l~~~~~~~~~~~~~~~G~l~l 388 (548)
.++|++||++.+++.++..+.. +..|+++.+. +++..|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence 8899999999999999987654 3567777532 3678888874
No 108
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=2.7e-16 Score=139.93 Aligned_cols=107 Identities=24% Similarity=0.385 Sum_probs=91.8
Q ss_pred EEEEEeeeecCCCC-----------------CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEE
Q 008950 431 LSVLVQGAEDVEGE-----------------NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (548)
Q Consensus 431 L~V~v~~a~~L~~~-----------------~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 493 (548)
+.|+|++|++|+.. +.+||||++.+++++.+|++++++.||+|||+|.|.+..++..+.|.++
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999863 2589999999999999999999999999999999998665556799999
Q ss_pred EEEccCCccCCCCcceEEEEEechhhhccce-------eceEEEeCCCCCeEEE
Q 008950 494 VMSKRTGIRFWSKESLGHVEINLTDVVHNGR-------INEKYHLINSKRGVIH 540 (548)
Q Consensus 494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~-------~~~w~~L~~~~~G~i~ 540 (548)
|||++. .++|++||++.+++.++...+. ...|+.|.+++.+..+
T Consensus 82 v~D~d~---~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~~ 132 (151)
T cd04018 82 IRDWDR---VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYSL 132 (151)
T ss_pred EEECCC---CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccccc
Confidence 999985 5789999999999999977553 3689999988765443
No 109
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=2.2e-16 Score=134.33 Aligned_cols=100 Identities=19% Similarity=0.275 Sum_probs=82.1
Q ss_pred ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (548)
++.|.|+|++|++|+..+ ..||||++++++++ .+|++.++ .||.|||.|.|.+.+.. ..|.|+|||+|.. +
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-C
Confidence 378999999999997654 56999999998754 58888877 59999999999997644 4599999999865 8
Q ss_pred CCeeEEEEEECcccCCCCce--EEEEecccc
Q 008950 343 HDRLGMQLVPLKLLTPHETK--EFTLDLLKH 371 (548)
Q Consensus 343 dd~lG~~~i~l~~l~~~~~~--~~~l~l~~~ 371 (548)
||+||++.++|+++...+.. ..|++|...
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 99999999999999865433 567776543
No 110
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=1.7e-16 Score=143.86 Aligned_cols=110 Identities=34% Similarity=0.326 Sum_probs=92.4
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEec---CCCCEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ 333 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~ 333 (548)
...+.|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+.. .....|.|+
T Consensus 22 ~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~ 101 (162)
T cd04020 22 KKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELT 101 (162)
T ss_pred cCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence 34478999999999999999998899999999998542 2345799999999999999999998532 234689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
|||++.+++|++||++.++++++........|+++
T Consensus 102 V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 102 VWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 99999999999999999999999866666666655
No 111
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.69 E-value=7.9e-16 Score=132.66 Aligned_cols=110 Identities=25% Similarity=0.443 Sum_probs=95.6
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC
Q 008950 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS 505 (548)
Q Consensus 429 g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 505 (548)
|.|.|+|++|+||+. .+.+||||++++++..++|++++++.||.|||+|.|.+.+. .+.+.++|||++. .+.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~--~~~l~~~v~d~~~---~~~ 75 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI--HDVLEVTVYDEDK---DKK 75 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc--CCEEEEEEEECCC---CCC
Confidence 679999999999986 35789999999999889999999999999999999998753 4689999999874 568
Q ss_pred CcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEE
Q 008950 506 KESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDIRW 545 (548)
Q Consensus 506 d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 545 (548)
+++||++.+++.++..+. .+||+|.+. ..|+|.+++++
T Consensus 76 ~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 76 PEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CceeeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 899999999999986544 589999754 38999999986
No 112
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=1.5e-16 Score=137.88 Aligned_cols=120 Identities=29% Similarity=0.420 Sum_probs=94.6
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCC
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd 344 (548)
+|+|+|++|++|+..|..|.+||||++++++... ..+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4799999999999999999999999999987653 357888889999999999999987666789999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEe
Q 008950 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (548)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 394 (548)
+||++.+++++..-. .++++.-+. .+....|.++.+..+.|
T Consensus 80 ~iG~~~i~l~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFFS-KHRATCGLP--------PTYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeecccccc-hHHHhccCC--------CcccccCceecCcccCc
Confidence 999999999977642 222222221 12235677766665554
No 113
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.68 E-value=3.2e-16 Score=132.03 Aligned_cols=92 Identities=18% Similarity=0.318 Sum_probs=81.3
Q ss_pred eEEEEEEeeeecCCCC-------CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCc
Q 008950 429 GLLSVLVQGAEDVEGE-------NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGI 501 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~-------~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~ 501 (548)
|+|.|+|.+|++|+.. +.+||||+++++++.+||++++++.||+|||.|.|.+.+......|.++|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-- 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-- 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC--
Confidence 6899999999999852 2489999999998889999999999999999999998765444589999999985
Q ss_pred cCCCCcceEEEEEechhhhccc
Q 008950 502 RFWSKESLGHVEINLTDVVHNG 523 (548)
Q Consensus 502 ~~~~d~~lG~~~i~L~~l~~~~ 523 (548)
.+.|++||++.++|++++.+.
T Consensus 79 -~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 -FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred -CCCCcceEEEEEEHHHHHhhC
Confidence 678999999999999998754
No 114
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.68 E-value=2.7e-16 Score=139.30 Aligned_cols=93 Identities=45% Similarity=0.708 Sum_probs=85.1
Q ss_pred ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (548)
.|.|+|+|++|+||+..+. +.+||||+++++++. ++|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999999887 899999999998754 6899999999999999999999876 6789999999999999
Q ss_pred CCeeEEEEEECcccCCCC
Q 008950 343 HDRLGMQLVPLKLLTPHE 360 (548)
Q Consensus 343 dd~lG~~~i~l~~l~~~~ 360 (548)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999988653
No 115
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.68 E-value=4.5e-16 Score=135.04 Aligned_cols=113 Identities=25% Similarity=0.433 Sum_probs=95.1
Q ss_pred cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC----CCCCCcEEEEEEcC--
Q 008950 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG-- 457 (548)
Q Consensus 384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~----~~~~dpyv~v~l~~-- 457 (548)
|+|++++.|.+. .+.|.|+|.+|+||+. .+.+||||++++.+
T Consensus 1 G~i~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~ 48 (123)
T cd08521 1 GEIEFSLSYNYK--------------------------------TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDK 48 (123)
T ss_pred CeEEEEEEEeCC--------------------------------CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCC
Confidence 889999999753 5789999999999975 35799999999842
Q ss_pred ---eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL 531 (548)
Q Consensus 458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L 531 (548)
.+++|++++++.||+|||+|.|.+..... ...|.++|||++. .+.+++||++.++|+++..+.....||+|
T Consensus 49 ~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~---~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 49 SKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR---FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC---CcCCceeeEEEEecccccccCCCccEEEC
Confidence 35699999999999999999999875322 3479999999874 67889999999999999776677899987
No 116
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.68 E-value=1.5e-16 Score=140.56 Aligned_cols=126 Identities=24% Similarity=0.452 Sum_probs=104.4
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~-- 457 (548)
.|+|.+++.|.|. .|.|.|+|++|++|+. .+.+||||++++.+
T Consensus 1 ~G~l~~~l~y~~~--------------------------------~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~ 48 (136)
T cd08402 1 LGDICFSLRYVPT--------------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 48 (136)
T ss_pred CcEEEEEeEEcCC--------------------------------CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECC
Confidence 4899999999974 5789999999999986 35799999999953
Q ss_pred ---eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN 533 (548)
Q Consensus 458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~ 533 (548)
..++|++++++.||.|||+|.|.+..... ...|.++|||++. ++.|++||++.+++... +....+|+++..
T Consensus 49 ~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~---~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 49 KRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR---IGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred cccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC---CCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 34689999999999999999999865322 2379999999985 67899999999999763 445689999998
Q ss_pred CCCeEEEEEEEEEeC
Q 008950 534 SKRGVIHVDIRWKMI 548 (548)
Q Consensus 534 ~~~G~i~l~~~~~~~ 548 (548)
++...|. +|+.|
T Consensus 124 ~~~~~~~---~wh~~ 135 (136)
T cd08402 124 SPRRPIA---QWHTL 135 (136)
T ss_pred CCCCeee---EEEEc
Confidence 8888877 88764
No 117
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.68 E-value=1.2e-15 Score=133.65 Aligned_cols=118 Identities=24% Similarity=0.374 Sum_probs=94.1
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCccc----------ceeeeeeecCCCCCee-eceEEEEEecCCCCEEEEE
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL----------PWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQ 333 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~----------~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~ 333 (548)
+..|++++|+||+ ++..|++||||++++.+... +.++|+++++++||+| ||+|.|.+. .++.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4678999999998 67789999999999965432 2579999999999999 999999985 35789999
Q ss_pred EEEcCCCCC---CCeeEEEEEECcccCCCC---ceEEEEeccccccCCCCCCCccccEEEEEE
Q 008950 334 VFDWDKVGG---HDRLGMQLVPLKLLTPHE---TKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (548)
Q Consensus 334 v~d~d~~~~---dd~lG~~~i~l~~l~~~~---~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 390 (548)
|||++..++ +++||++.++++++..+. ...+++++.+.. .....+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence 999875443 799999999999998653 344566664432 2467889998875
No 118
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.68 E-value=5e-16 Score=134.62 Aligned_cols=114 Identities=19% Similarity=0.286 Sum_probs=95.5
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~-- 457 (548)
.|+|++++.|.+. .+.|.|+|++|+||+. .+..||||++.+..
T Consensus 2 ~G~l~~sl~Y~~~--------------------------------~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~ 49 (124)
T cd08389 2 CGDLDVAFEYDPS--------------------------------ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK 49 (124)
T ss_pred CEEEEEEEEECCC--------------------------------CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC
Confidence 5999999999974 5789999999999986 35789999988733
Q ss_pred -eEEEeeeccCCCCCccCceEEEE-ccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950 458 -DKKRTKMIRKTRDPAWNEEFQFM-LDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532 (548)
Q Consensus 458 -~~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~ 532 (548)
++++|+++++ .||+|||+|.|. +.... .+..|.++|+|++. ++++++||++.++|+++..++....||+|+
T Consensus 50 ~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~---~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 50 KQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER---MRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred cceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC---cccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 4569999888 999999999998 54321 23479999999985 678999999999999997777778999986
No 119
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=3.2e-16 Score=134.97 Aligned_cols=102 Identities=27% Similarity=0.466 Sum_probs=89.0
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCC
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (548)
|+|+|+|++|++|+..+..|.+||||++++++.. .++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999997643 36899999999999999999988664 57899999999999999
Q ss_pred CeeEEEEEECcccCCCCceEEEEecc
Q 008950 344 DRLGMQLVPLKLLTPHETKEFTLDLL 369 (548)
Q Consensus 344 d~lG~~~i~l~~l~~~~~~~~~l~l~ 369 (548)
++||++.+++.++..+ ....|+.+.
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~ 102 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEY 102 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEec
Confidence 9999999999999877 445555554
No 120
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.68 E-value=3.9e-16 Score=132.49 Aligned_cols=101 Identities=24% Similarity=0.499 Sum_probs=87.4
Q ss_pred EEEEEeeeecCCC----CCCCCcEEEEEEcCeEEEeeeccCCCCCcc-CceEEEEccCCCC-CCeEEEEEEEccCCccCC
Q 008950 431 LSVLVQGAEDVEG----ENHNNPYAIILYKGDKKRTKMIRKTRDPAW-NEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 431 L~V~v~~a~~L~~----~~~~dpyv~v~l~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~ 504 (548)
|.|+|++|++|+. .+.+||||++++++..+||++++++.||.| ||.|.|.+..... ++.|.|+|||++. ++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~---~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT---YS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC---CC
Confidence 5799999999975 346899999999998899999999999999 9999999976432 3589999999985 67
Q ss_pred CCcceEEEEEechhhhc---cceeceEEEeCCC
Q 008950 505 SKESLGHVEINLTDVVH---NGRINEKYHLINS 534 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~---~~~~~~w~~L~~~ 534 (548)
.+++||++.+++.++.. +...+.||+|.++
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~~ 110 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYDT 110 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcccC
Confidence 88999999999999988 3457899999863
No 121
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=4.2e-16 Score=138.69 Aligned_cols=93 Identities=35% Similarity=0.600 Sum_probs=81.6
Q ss_pred EEEEEEEEecCccccCCCC--------------CCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC-CCE
Q 008950 265 ILHVKVVRASKLLKKDFLG--------------TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQI 329 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g--------------~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~ 329 (548)
.|.|+|++|++|+.+|..+ .+||||++.+++.+ .+|++++++.||+|||+|.|.+..+. .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999999865 48999999999999999999986443 578
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCCCC
Q 008950 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360 (548)
Q Consensus 330 L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~ 360 (548)
|.|+|||+|..++|++||++.++++++...+
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987654
No 122
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.67 E-value=9.5e-16 Score=133.41 Aligned_cols=115 Identities=22% Similarity=0.294 Sum_probs=96.4
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--- 456 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~--- 456 (548)
.|+|++++.|.+. .+.|.|+|++|+||+. .+.+||||++++.
T Consensus 2 ~G~l~~~l~y~~~--------------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~ 49 (125)
T cd08386 2 LGRIQFSVSYDFQ--------------------------------ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK 49 (125)
T ss_pred ccEEEEEEEECCC--------------------------------CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC
Confidence 5999999999763 5689999999999976 3579999999993
Q ss_pred CeEEEeeeccCCCCCccCceEEEEccCC--CCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950 457 GDKKRTKMIRKTRDPAWNEEFQFMLDEP--PLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532 (548)
Q Consensus 457 ~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~ 532 (548)
+..++|++++++.||.|||+|.|.+... .....|.++|||++. ++.+++||++.++++++........||.|.
T Consensus 50 ~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~---~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 50 KHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR---FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC---CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 3557999999999999999999975322 123479999999985 677899999999999998777778999985
No 123
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.67 E-value=2.4e-16 Score=139.20 Aligned_cols=126 Identities=23% Similarity=0.383 Sum_probs=101.2
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~-- 457 (548)
+|+|.++++|.+. .+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 1 ~G~l~~~l~y~~~--------------------------------~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~ 48 (136)
T cd08404 1 RGELLLSLCYQPT--------------------------------TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGK 48 (136)
T ss_pred CCeEEEEEEEeCC--------------------------------CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCC
Confidence 5999999999753 4679999999999986 35789999999843
Q ss_pred ---eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN 533 (548)
Q Consensus 458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~ 533 (548)
.+++|++++++.||.|||+|.|.+..... ...|.|+|||++. ++.+++||++.+++.. ......+|+.|.+
T Consensus 49 ~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~---~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 49 KRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR---VTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred ceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC---CCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 24589999999999999999999875322 2468899999985 6789999999999998 3445688999987
Q ss_pred CCCeEEEEEEEEEeC
Q 008950 534 SKRGVIHVDIRWKMI 548 (548)
Q Consensus 534 ~~~G~i~l~~~~~~~ 548 (548)
.+.-.|. +|+.+
T Consensus 124 ~~~~~i~---~Wh~l 135 (136)
T cd08404 124 PPRRQIA---EWHML 135 (136)
T ss_pred CCCCeee---EEEec
Confidence 6544444 77754
No 124
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.67 E-value=2.6e-16 Score=137.56 Aligned_cols=91 Identities=27% Similarity=0.565 Sum_probs=83.5
Q ss_pred ceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950 428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 504 (548)
.|.|+|.|.+|.||..+ +.+||||.+.+++++.||+++++++||+|||.|+|.+.++ ...|.++|||+|. ++
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~---fs 79 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDT---FS 79 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCC---CC
Confidence 69999999999999753 6799999999999999999999999999999999999996 4689999999996 89
Q ss_pred CCcceEEEEEechhhhccc
Q 008950 505 SKESLGHVEINLTDVVHNG 523 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~~~ 523 (548)
.|++||.++|+|..++...
T Consensus 80 ~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 80 SDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred cccccceeeeccHHHHHHh
Confidence 9999999999999887643
No 125
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.67 E-value=4.5e-16 Score=136.79 Aligned_cols=101 Identities=35% Similarity=0.511 Sum_probs=87.2
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc----cceeeeeeecCCCCCeeeceEEEEEecC----CCCEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQIL 330 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L 330 (548)
.....+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|
T Consensus 11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 344568899999999999999888999999999997532 2357999999999999999999998642 35689
Q ss_pred EEEEEEcCCCCCCCeeEEEEEECcccCCC
Q 008950 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (548)
Q Consensus 331 ~v~v~d~d~~~~dd~lG~~~i~l~~l~~~ 359 (548)
.|+|||++..++|++||++.++|+++...
T Consensus 91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 91 LFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999999999999999999999999854
No 126
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.67 E-value=4e-16 Score=138.58 Aligned_cols=100 Identities=28% Similarity=0.356 Sum_probs=84.3
Q ss_pred EEEEEeeeecCCC-CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccC-----------C--C-CCCeE
Q 008950 431 LSVLVQGAEDVEG-ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDE-----------P--P-LHEKI 490 (548)
Q Consensus 431 L~V~v~~a~~L~~-~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~-----------~--~-~~~~l 490 (548)
|.|+|++|+||+. .+.+||||++++.+ .+++|++++++.||+|||+|.|.+.. + . ....|
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L 81 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLEL 81 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEE
Confidence 7899999999987 45799999999976 45799999999999999999999951 1 1 12478
Q ss_pred EEEEEEccCCccCCCCcceEEEEEechhhhcc-ceeceEEEeCC
Q 008950 491 HIEVMSKRTGIRFWSKESLGHVEINLTDVVHN-GRINEKYHLIN 533 (548)
Q Consensus 491 ~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~-~~~~~w~~L~~ 533 (548)
.|+|||++. .+.|++||++.|+|.++... .....||+|..
T Consensus 82 ~i~V~d~~~---~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 82 RVDLWHASM---GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEcCCC---CCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 999999975 56899999999999999876 56689999965
No 127
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.67 E-value=2.1e-16 Score=139.26 Aligned_cols=125 Identities=26% Similarity=0.458 Sum_probs=105.7
Q ss_pred cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 008950 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-- 458 (548)
Q Consensus 384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~-- 458 (548)
|+|++.++|.+. .+.|.|+|++|+||+. .+.+||||++++.+.
T Consensus 1 G~i~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~ 48 (134)
T cd00276 1 GELLLSLSYLPT--------------------------------AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGK 48 (134)
T ss_pred CeEEEEEEeeCC--------------------------------CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCe
Confidence 789999999863 4789999999999986 357999999999653
Q ss_pred ---EEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950 459 ---KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS 534 (548)
Q Consensus 459 ---~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~ 534 (548)
.++|++++++.||.|||+|.|.+..... ...|.|+|||.+. ...+++||.+.+++++ .+....+||+|.++
T Consensus 49 ~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~---~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 49 KLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS---VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC---CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 4599999999999999999999876421 4589999999985 5678999999999999 55567899999998
Q ss_pred CCeEEEEEEEEEeC
Q 008950 535 KRGVIHVDIRWKMI 548 (548)
Q Consensus 535 ~~G~i~l~~~~~~~ 548 (548)
++..|. +|++|
T Consensus 124 ~~~~~~---~wh~~ 134 (134)
T cd00276 124 PRKPIA---RWHKL 134 (134)
T ss_pred CCCceE---EeeeC
Confidence 888777 88875
No 128
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.67 E-value=1e-15 Score=133.36 Aligned_cols=115 Identities=22% Similarity=0.358 Sum_probs=93.4
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---C-CCCCcEEEEEEcC-
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYKG- 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~-~~~dpyv~v~l~~- 457 (548)
.|+|.+++.|.+. .+.|+|+|++|+||+. . +.+||||++++..
T Consensus 2 ~G~l~~~l~y~~~--------------------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~ 49 (128)
T cd08388 2 LGTLFFSLRYNSE--------------------------------KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE 49 (128)
T ss_pred CeEEEEEEEEECC--------------------------------CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC
Confidence 6999999999863 5789999999999986 2 5789999999853
Q ss_pred --eEEEeeeccCCCCCccCceEEEE-ccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhcc--ceeceEEEe
Q 008950 458 --DKKRTKMIRKTRDPAWNEEFQFM-LDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHN--GRINEKYHL 531 (548)
Q Consensus 458 --~~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~--~~~~~w~~L 531 (548)
+++||++++++.||+|||+|.|. +.... .+..|.++|||++. +++|++||++.++|+++... +....|-+|
T Consensus 50 ~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~---~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 50 KEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR---YSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred cCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC---CCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 34699999999999999999994 33211 22479999999874 67899999999999999544 566778776
Q ss_pred C
Q 008950 532 I 532 (548)
Q Consensus 532 ~ 532 (548)
+
T Consensus 127 ~ 127 (128)
T cd08388 127 Q 127 (128)
T ss_pred c
Confidence 5
No 129
>PLN03008 Phospholipase D delta
Probab=99.66 E-value=7.9e-16 Score=165.54 Aligned_cols=130 Identities=28% Similarity=0.468 Sum_probs=109.5
Q ss_pred CceEEEEEEEEecCccccCC------------------------------------------CCCCCcEEEEEEcCcccc
Q 008950 262 PVGILHVKVVRASKLLKKDF------------------------------------------LGTSDPYVKLSLTGEKLP 299 (548)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~------------------------------------------~g~~dpyv~v~l~~~~~~ 299 (548)
-.|.|.++|.+|++|+.+|. .+++||||+|.+++++.
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv- 90 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATL- 90 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcce-
Confidence 35899999999999885321 24679999999987553
Q ss_pred eeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCC
Q 008950 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKD 379 (548)
Q Consensus 300 ~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~ 379 (548)
.||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+|++++..++....|+++.+... +.
T Consensus 91 -~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp 163 (868)
T PLN03008 91 -ARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KP 163 (868)
T ss_pred -eeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CC
Confidence 58999999999999999999998854 58999999999986 5899999999999999999999999976532 23
Q ss_pred CccccEEEEEEEEEecccCc
Q 008950 380 MKQRGKIVVELTYVPFKEDS 399 (548)
Q Consensus 380 ~~~~G~l~l~l~~~p~~~~~ 399 (548)
.+..|+|+++++|.|...+.
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 45678999999999997753
No 130
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.66 E-value=3e-16 Score=138.10 Aligned_cols=109 Identities=34% Similarity=0.402 Sum_probs=90.3
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 334 (548)
+....|.|.|+|++|+||+..|..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 445679999999999999999988999999999997532 3357999999999999999999998643 356899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~ 369 (548)
||++..++|++||++.+++... ++....|+++.
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l 120 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCL 120 (133)
T ss_pred EeCCCCCCccEEEEEEEecCCC--CchHHHHHHHH
Confidence 9999988999999999999863 33444555553
No 131
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.66 E-value=1.7e-15 Score=130.91 Aligned_cols=109 Identities=20% Similarity=0.405 Sum_probs=92.5
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK 506 (548)
Q Consensus 431 L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d 506 (548)
|.|+|++|++|+. .+.+||||++.++++. .+|++++++.||.|||.|.|.+... .+.|.++|||++. .+.|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~--~~~l~v~v~d~~~---~~~d 76 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG--FHTVSFYVLDEDT---LSRD 76 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC--CCEEEEEEEECCC---CCCC
Confidence 7899999999975 3578999999998765 5999999999999999999998653 3689999999984 6789
Q ss_pred cceEEEEEechhhhccc-eeceEEEeCCCC-----CeEEEEEEE
Q 008950 507 ESLGHVEINLTDVVHNG-RINEKYHLINSK-----RGVIHVDIR 544 (548)
Q Consensus 507 ~~lG~~~i~L~~l~~~~-~~~~w~~L~~~~-----~G~i~l~~~ 544 (548)
++||++.++++++.... ..+.|++|.+.. .|+|+|+++
T Consensus 77 ~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 77 DVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999999887643 468999997632 799998864
No 132
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.66 E-value=1.3e-15 Score=133.68 Aligned_cols=107 Identities=25% Similarity=0.454 Sum_probs=92.0
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCC
Q 008950 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG 500 (548)
Q Consensus 429 g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~ 500 (548)
+.|.|+|++|++|+. .+..||||++.+.+ ..++|++++++.||.|||+|.|.+........|.++|||++.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~- 91 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR- 91 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC-
Confidence 679999999999985 35799999999963 467999999999999999999998765345689999999874
Q ss_pred ccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEE
Q 008950 501 IRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVI 539 (548)
Q Consensus 501 ~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i 539 (548)
.+.+++||++.++|+++... ....||+|.+.+.|+.
T Consensus 92 --~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 92 --TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred --CCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 56889999999999999865 5678999999888864
No 133
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.66 E-value=3.1e-16 Score=183.46 Aligned_cols=117 Identities=29% Similarity=0.604 Sum_probs=107.2
Q ss_pred CceEEEEEEeeeecCCCC-CCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950 427 GAGLLSVLVQGAEDVEGE-NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~-~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 504 (548)
-.|.|.|+|++|+||.+. +.+||||++.++++ ++||++++++.||+|||.|+|.+.+++.++.++++|||++. +
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~---f- 2053 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT---F- 2053 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc---c-
Confidence 468999999999999975 78999999999965 77999999999999999999999998777889999999984 4
Q ss_pred CCcceEEEEEechhhhccceeceEEEeCC--CCCeE---EEEEEEEEe
Q 008950 505 SKESLGHVEINLTDVVHNGRINEKYHLIN--SKRGV---IHVDIRWKM 547 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~---i~l~~~~~~ 547 (548)
+++.||+++|++.++..++.+++||+|.+ ++.|+ |+++++|++
T Consensus 2054 ~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 GKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 56699999999999999999999999997 57899 999999986
No 134
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.66 E-value=2.5e-16 Score=138.82 Aligned_cols=126 Identities=21% Similarity=0.341 Sum_probs=102.0
Q ss_pred cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 008950 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--- 457 (548)
Q Consensus 384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~--- 457 (548)
|+|.+++.|.+. .+.|.|+|++|+||+. .+.+||||++++..
T Consensus 2 ~ei~~sL~Y~~~--------------------------------~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~ 49 (138)
T cd08408 2 PELLLGLEYNAL--------------------------------TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDG 49 (138)
T ss_pred CeEEEEeEEcCC--------------------------------CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCC
Confidence 788999998864 5789999999999986 35789999999953
Q ss_pred ---eEEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN 533 (548)
Q Consensus 458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~ 533 (548)
.++||++++++.||+|||+|.|.+.... .+..|.|+|||.+. ++++++||++.+++...-. ....+|+.+..
T Consensus 50 ~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~---~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 50 QEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK---MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred cceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC---CCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 2459999999999999999999997532 23489999999985 6789999999999875432 23468999988
Q ss_pred CCCeEEEEEEEEEeC
Q 008950 534 SKRGVIHVDIRWKMI 548 (548)
Q Consensus 534 ~~~G~i~l~~~~~~~ 548 (548)
+++-.|. +|+++
T Consensus 126 ~~~~~v~---~WH~l 137 (138)
T cd08408 126 SKGQQVC---RWHTL 137 (138)
T ss_pred CCCCEEe---Eeeec
Confidence 7776666 88875
No 135
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=9.3e-16 Score=130.43 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=88.5
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCC---CCeEEEEEEEccCCccCC
Q 008950 428 AGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL---HEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~---~~~l~v~V~d~~~~~~~~ 504 (548)
...|+|+|++|++|. .+.+||||++++++++++|++++++.||.|||.|.|.+..+.. +..|.++|||++. ++
T Consensus 3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~---~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS---LR 78 (111)
T ss_pred cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc---cc
Confidence 467899999999999 5789999999999999999999999999999999999865421 3579999999875 67
Q ss_pred CCcceEEEEEechhhhcc---ceeceEEEeCC
Q 008950 505 SKESLGHVEINLTDVVHN---GRINEKYHLIN 533 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~~---~~~~~w~~L~~ 533 (548)
+|++||++.++|+++... ....+||+|.+
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 799999999999999765 34688999975
No 136
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.65 E-value=8.9e-16 Score=135.30 Aligned_cols=106 Identities=30% Similarity=0.399 Sum_probs=90.7
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCc-ccceeeeeeecCCCCCeeeceEEEEEecC---------------CCCE
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQI 329 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------------~~~~ 329 (548)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999841 12346999999999999999999998765 4578
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccc
Q 008950 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372 (548)
Q Consensus 330 L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~ 372 (548)
|.|+|||++..+++++||++.+++.++........|++|.+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998889999999999999998776777888876543
No 137
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=9e-16 Score=130.51 Aligned_cols=98 Identities=28% Similarity=0.362 Sum_probs=83.6
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC----CCEEEEEEEEcCC
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK 339 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~d~ 339 (548)
-.|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 46899999999998 4789999999999764 58999999999999999999986432 4689999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCce---EEEEec
Q 008950 340 VGGHDRLGMQLVPLKLLTPHETK---EFTLDL 368 (548)
Q Consensus 340 ~~~dd~lG~~~i~l~~l~~~~~~---~~~l~l 368 (548)
.++|++||++.++++++..+..+ ..|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 88999999999999999876443 346655
No 138
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=3.2e-16 Score=138.45 Aligned_cols=126 Identities=21% Similarity=0.441 Sum_probs=102.0
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEc--C
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--G 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~--~ 457 (548)
.|+|.++++|.+. .+.|.|+|++|+||+. .+.+||||++++. +
T Consensus 1 ~G~l~~sl~y~~~--------------------------------~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~ 48 (136)
T cd08405 1 RGELLLSLCYNPT--------------------------------ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKD 48 (136)
T ss_pred CcEEEEEEEEcCC--------------------------------CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCC
Confidence 4999999999974 5789999999999975 3579999999983 2
Q ss_pred ---eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN 533 (548)
Q Consensus 458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~ 533 (548)
.+++|++++++.||.|||+|.|.+..... +..|.|+|||++. ++.+++||++.+++.+. +...++|+++..
T Consensus 49 ~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~---~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 49 KRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR---LSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred CccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC---CCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 24589999999999999999999864222 3479999999984 67889999999999876 444578998887
Q ss_pred CCCeEEEEEEEEEeC
Q 008950 534 SKRGVIHVDIRWKMI 548 (548)
Q Consensus 534 ~~~G~i~l~~~~~~~ 548 (548)
.+...|. +|+.+
T Consensus 124 ~~~~~~~---~wh~l 135 (136)
T cd08405 124 KPRQPVA---QWHRL 135 (136)
T ss_pred CCCCchh---EEEec
Confidence 7666665 67643
No 139
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=4.5e-16 Score=137.47 Aligned_cols=98 Identities=32% Similarity=0.448 Sum_probs=84.7
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC--cccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v 334 (548)
+....|.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4556799999999999999999889999999999843 33345689999999999999999999753 2356899999
Q ss_pred EEcCCCCCCCeeEEEEEECccc
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLL 356 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l 356 (548)
||++..++|++||++.+++.+.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC
Confidence 9999999999999999999886
No 140
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=1.8e-15 Score=133.20 Aligned_cols=111 Identities=26% Similarity=0.455 Sum_probs=93.8
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCe-------EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGD-------KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT 499 (548)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~-------~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 499 (548)
.|+|+|++|++|+.. +.+||||++++.+. .++|++++++.||.|||+|.|.+... ...|.++|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC
Confidence 378999999999863 57999999999765 46999999999999999999998653 4679999999885
Q ss_pred CccCCCCcceEEEEEechhhhccce------eceEEEeCCC-----CCeEEEEEEEE
Q 008950 500 GIRFWSKESLGHVEINLTDVVHNGR------INEKYHLINS-----KRGVIHVDIRW 545 (548)
Q Consensus 500 ~~~~~~d~~lG~~~i~L~~l~~~~~------~~~w~~L~~~-----~~G~i~l~~~~ 545 (548)
++.+++||++.++++++..... ..+||+|.+. ..|+|++++.|
T Consensus 79 ---~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 ---LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred ---CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 6789999999999999986532 3589999843 38999999987
No 141
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.65 E-value=9.1e-16 Score=132.50 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=86.4
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC--cccceeeeeeecCCC-CCeeeceEEEEEecCC-CCEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNL-NPEWNENFKLVVKEPE-SQILQLQV 334 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~-~~~L~v~v 334 (548)
+.+..|.|+|+|++|+||++.+..+.+||||++++-+ .+..++||+++++|. ||.|||+|.|.+.... .-.|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 4456799999999999999976667789999999853 345578999999995 6999999999997533 34788999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
||++..+++++||++.++.++... +..++|.+.
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~~-~~~~hW~~m 121 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSSS-EAVEQWKDT 121 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCCc-hhhhhHHHH
Confidence 999998999999999999987432 223444443
No 142
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.65 E-value=1.9e-15 Score=131.11 Aligned_cols=114 Identities=21% Similarity=0.278 Sum_probs=96.3
Q ss_pred cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC----CCCCcEEEEEEc---
Q 008950 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYK--- 456 (548)
Q Consensus 384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dpyv~v~l~--- 456 (548)
|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.
T Consensus 1 G~l~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~ 48 (123)
T cd08390 1 GRLWFSVQYDLE--------------------------------EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE 48 (123)
T ss_pred CEEEEEEEECCC--------------------------------CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC
Confidence 889999999863 57899999999999753 468999999984
Q ss_pred CeEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950 457 GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532 (548)
Q Consensus 457 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~ 532 (548)
...++|++++++.||+|||.|.|.+..... ...|.|+|||.+. .+.+++||++.++|+++........|++|.
T Consensus 49 ~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~---~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 49 RRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR---FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc---CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 345699999999999999999999865322 2479999999875 567899999999999998877778999986
No 143
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.65 E-value=4.6e-16 Score=137.04 Aligned_cols=126 Identities=25% Similarity=0.426 Sum_probs=99.6
Q ss_pred cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 008950 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--- 457 (548)
Q Consensus 384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~--- 457 (548)
|+|.++++|.|. .+.|.|+|++|++|+. .+.+||||++++..
T Consensus 1 G~i~~~l~y~~~--------------------------------~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~ 48 (135)
T cd08410 1 GELLLSLNYLPS--------------------------------AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK 48 (135)
T ss_pred CcEEEEEEECCC--------------------------------CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc
Confidence 889999999974 4789999999999976 35799999999832
Q ss_pred --eEEEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950 458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS 534 (548)
Q Consensus 458 --~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~ 534 (548)
++++|++++++.||+|||+|.|.+...... ..|.|+|||++. .+++++||++.|+....- .+...+|+.|.++
T Consensus 49 ~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~---~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~ 124 (135)
T cd08410 49 LIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV---KSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS 124 (135)
T ss_pred ccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC---CCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence 346999999999999999999998653232 369999999875 678999999987764332 2234789999887
Q ss_pred CCeEEEEEEEEEeC
Q 008950 535 KRGVIHVDIRWKMI 548 (548)
Q Consensus 535 ~~G~i~l~~~~~~~ 548 (548)
++-.|. +|+.+
T Consensus 125 ~~~~~~---~wh~l 135 (135)
T cd08410 125 QRTAVE---QWHSL 135 (135)
T ss_pred CCCEee---EeecC
Confidence 666665 77654
No 144
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.65 E-value=4.1e-15 Score=130.85 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=97.4
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEE-EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCcc-CCC
Q 008950 428 AGLLSVLVQGAEDVEGENHNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIR-FWS 505 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~-~~~ 505 (548)
...|.|.|.+|++|+.+ .+|||.+.+++... ||+++.++.||.|+|.|.|.+... ...+.|.|+.++...+ ..+
T Consensus 10 ~~sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccC
Confidence 45799999999999985 48999999999886 999999999999999999976553 3579999976553211 126
Q ss_pred CcceEEEEEechhhhccceeceEEEeCCCC-------------CeEEEEEEEEEeC
Q 008950 506 KESLGHVEINLTDVVHNGRINEKYHLINSK-------------RGVIHVDIRWKMI 548 (548)
Q Consensus 506 d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-------------~G~i~l~~~~~~~ 548 (548)
+.+||.+.|++.++..+...++||+|.+.. .+.||++++|+++
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 799999999999999888889999997542 2699999999874
No 145
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.1e-15 Score=129.79 Aligned_cols=102 Identities=25% Similarity=0.325 Sum_probs=86.0
Q ss_pred CCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCC-
Q 008950 281 FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH- 359 (548)
Q Consensus 281 ~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~- 359 (548)
.+|.+||||+++++++. .++|++++++.||+|||+|.|.+.+...+.|.|+|||++.. +|++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46899999999998754 26899999999999999999999876678899999999988 899999999999998643
Q ss_pred CceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (548)
Q Consensus 360 ~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 395 (548)
.....|++|. +...|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~----------~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLS----------GNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECC----------CCCCCEEEEEEEEecC
Confidence 3345777763 2357999999999984
No 146
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.64 E-value=5.1e-16 Score=137.12 Aligned_cols=99 Identities=36% Similarity=0.538 Sum_probs=84.9
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC--cccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEE
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (548)
.+....|.|.|+|++|++|+..+..|.+||||++++.+ +....++|++++++.||.|||+|.|.+... ....|.|+
T Consensus 9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 88 (136)
T cd08402 9 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT 88 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 35567799999999999999999899999999999963 333456899999999999999999998632 23479999
Q ss_pred EEEcCCCCCCCeeEEEEEECccc
Q 008950 334 VFDWDKVGGHDRLGMQLVPLKLL 356 (548)
Q Consensus 334 v~d~d~~~~dd~lG~~~i~l~~l 356 (548)
|||++..++|++||++.+++...
T Consensus 89 v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 89 VLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EEeCCCCCCCceeEEEEECCccC
Confidence 99999999999999999999864
No 147
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.64 E-value=1.8e-15 Score=131.19 Aligned_cols=108 Identities=37% Similarity=0.507 Sum_probs=91.4
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEec---CCCCEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ 333 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~ 333 (548)
++...+.|+|+|++|++|+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.... .....+.|+
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 44556899999999999999988899999999998532 2335799999999999999999996322 235689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 008950 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (548)
Q Consensus 334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~ 367 (548)
|||++.. ++++||++.++++++..++.+++++.
T Consensus 90 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 90 VLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 9999988 88999999999999999988888764
No 148
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.64 E-value=1.5e-15 Score=130.99 Aligned_cols=99 Identities=31% Similarity=0.453 Sum_probs=87.0
Q ss_pred EEEecCccccCCCCCCCcEEEEEEcCcc----cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCC----CC
Q 008950 270 VVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK----VG 341 (548)
Q Consensus 270 V~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~----~~ 341 (548)
.++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.|+|||+|. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4799999999989999999999998753 224699999999999999999998765456789999999997 78
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEec
Q 008950 342 GHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 342 ~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
+|++||++.++++++..++....++.|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 999999999999999988777788877
No 149
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.64 E-value=1.1e-15 Score=134.69 Aligned_cols=100 Identities=23% Similarity=0.352 Sum_probs=86.6
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc---ccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEE
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v 332 (548)
.++...+.|.|+|++|+||+..+..|.+||||++++.+. ...+++|++++++.||+|||+|.|.+.. ..+..|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 456677999999999999999998899999999999653 2235799999999999999999999863 34679999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccC
Q 008950 333 QVFDWDKVGGHDRLGMQLVPLKLLT 357 (548)
Q Consensus 333 ~v~d~d~~~~dd~lG~~~i~l~~l~ 357 (548)
+|||++..+++++||++.+++....
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCC
Confidence 9999999999999999999887554
No 150
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.64 E-value=5.5e-16 Score=136.41 Aligned_cols=113 Identities=19% Similarity=0.356 Sum_probs=91.5
Q ss_pred ceEEEEEEeeeecCCCC---CCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEcc
Q 008950 428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKR 498 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~ 498 (548)
.+.|.|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||+|.|.+..... ...|.++|||++
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 58999999999999863 5789999999953 34699999999999999999999875322 357999999987
Q ss_pred CCccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEEeC
Q 008950 499 TGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWKMI 548 (548)
Q Consensus 499 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~~~ 548 (548)
. .+.+++||++.+++.. .+....+||++..+++-.|. +|+.+
T Consensus 92 ~---~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~~---~wh~l 133 (133)
T cd08384 92 I---GKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKIE---AWHTL 133 (133)
T ss_pred C---CCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCChh---eeecC
Confidence 4 5678999999999985 34455789999887665554 67653
No 151
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.64 E-value=8.1e-16 Score=135.83 Aligned_cols=108 Identities=31% Similarity=0.394 Sum_probs=88.6
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 334 (548)
+....+.|.|+|++|+||+..|..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v 89 (136)
T cd08404 10 YQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV 89 (136)
T ss_pred EeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 34456889999999999999998999999999999543 23456899999999999999999998632 345789999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
||++..+++++||++.+++... +.....|.++
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~~--~~~~~~w~~l 121 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKAS--GSGGHHWKEV 121 (136)
T ss_pred EECCCCCCCccEEEEEECCcCC--CchHHHHHHH
Confidence 9999999999999999999982 3344445544
No 152
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.64 E-value=9.3e-16 Score=135.10 Aligned_cols=109 Identities=33% Similarity=0.476 Sum_probs=88.1
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC--cccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEE
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (548)
.+....|.|+|+|++|++|++.+..|.+||||++++.+ .+...++|++++++.||.|||+|.|.+... ....|.|+
T Consensus 8 ~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 8 CYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred EEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 34556799999999999999999999999999999853 234457899999999999999999998532 23579999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
|||++..+++++||++.+++... +.....|.++
T Consensus 88 v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 88 VVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred EEECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 99999999999999999998733 3333444444
No 153
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.64 E-value=4.8e-15 Score=130.62 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=93.6
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCC--------CCCeEEEEEEEcc
Q 008950 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP--------LHEKIHIEVMSKR 498 (548)
Q Consensus 430 ~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------~~~~l~v~V~d~~ 498 (548)
.|+|+|++|++|+. .+.+||||++.+++.+++|++++++.||.|||.|.|.+...+ ....+.++|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 58899999999976 357999999999999999999999999999999999754321 1246899999998
Q ss_pred CCccCCCCcceEEEEE-echhhhc---cceeceEEEeCCC--CCeEEEEEEEEEeC
Q 008950 499 TGIRFWSKESLGHVEI-NLTDVVH---NGRINEKYHLINS--KRGVIHVDIRWKMI 548 (548)
Q Consensus 499 ~~~~~~~d~~lG~~~i-~L~~l~~---~~~~~~w~~L~~~--~~G~i~l~~~~~~~ 548 (548)
. .+.|++||++.+ ++..+.. .....+||+|... ..|+|.|+++..++
T Consensus 82 ~---~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 S---VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred C---CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 5 677899999997 4433332 2355799999754 47999999998874
No 154
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.63 E-value=1.5e-15 Score=133.69 Aligned_cols=98 Identities=28% Similarity=0.427 Sum_probs=81.9
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 334 (548)
+....|.|.|+|++|++|+..|..|.+||||++++.+. ....++|+++++|.||+|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 44566999999999999999998899999999998432 23457899999999999999999998532 244799999
Q ss_pred EEcCCCCCCCeeEEEEEECccc
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLL 356 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l 356 (548)
||+|..+++++||++.+.....
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccC
Confidence 9999999999999998765433
No 155
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.63 E-value=8e-15 Score=127.60 Aligned_cols=112 Identities=21% Similarity=0.331 Sum_probs=94.3
Q ss_pred ceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950 428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 504 (548)
.++++|+|++|++|... +.+||||++.++++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++. .
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~---~- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNL---L- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCC---C-
Confidence 47899999999999863 5899999999999999999999999999999999988764 4689999999874 3
Q ss_pred CCcceEEEEEechhhhccceeceEEEeCC-------CCCeEEEEEEEEEe
Q 008950 505 SKESLGHVEINLTDVVHNGRINEKYHLIN-------SKRGVIHVDIRWKM 547 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~~~~~~~w~~L~~-------~~~G~i~l~~~~~~ 547 (548)
.|++||++.++++++. ....++|+|.. ...|.|.+++...+
T Consensus 76 ~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 5899999999998753 34468899942 13899999987653
No 156
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.63 E-value=5e-15 Score=128.58 Aligned_cols=118 Identities=29% Similarity=0.450 Sum_probs=93.6
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCC
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (548)
..|.|+|.+|+ |...+..+.+||||+++++++ ..++|++++++.||.|||+|.|.+.. .+.|.|+|||++..++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 555555789999999999876 23699999999999999999999853 57899999999999899
Q ss_pred CeeEEEEEECcccCCCCc-----eEEEEeccccccCCCCCCCccccEEEEEE
Q 008950 344 DRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (548)
Q Consensus 344 d~lG~~~i~l~~l~~~~~-----~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 390 (548)
++||++.++++++..... ...++++.+... ......|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENK----GSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCC----CcceeeeeEEEEe
Confidence 999999999999885432 234666643211 0346789998875
No 157
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.63 E-value=1.2e-15 Score=134.38 Aligned_cols=125 Identities=20% Similarity=0.381 Sum_probs=100.5
Q ss_pred cEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 008950 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--- 457 (548)
Q Consensus 384 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~--- 457 (548)
|+|.+++.|.+. .+.|+|+|++|++|+. .+.+||||++++..
T Consensus 1 g~l~~~~~y~~~--------------------------------~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~ 48 (134)
T cd08403 1 GELMFSLCYLPT--------------------------------AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGR 48 (134)
T ss_pred CeEEEEEEEcCC--------------------------------CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCc
Confidence 789999999974 5889999999999986 35799999999842
Q ss_pred --eEEEeeeccCCCCCccCceEEEEccCCCC-CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950 458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS 534 (548)
Q Consensus 458 --~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~ 534 (548)
..++|++++++.||.|||+|.|.+..... ...|.++|||++. .+.+++||++.+++... +....+|+.+..+
T Consensus 49 ~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~---~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~~ 123 (134)
T cd08403 49 RLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR---VGHNELIGVCRVGPNAD--GQGREHWNEMLAN 123 (134)
T ss_pred ccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC---CCCCceeEEEEECCCCC--CchHHHHHHHHHC
Confidence 24699999999999999999999865322 2369999999985 67899999999998732 3345789998877
Q ss_pred CCeEEEEEEEEEeC
Q 008950 535 KRGVIHVDIRWKMI 548 (548)
Q Consensus 535 ~~G~i~l~~~~~~~ 548 (548)
+.-.+. +|+.+
T Consensus 124 ~~~~~~---~wh~~ 134 (134)
T cd08403 124 PRKPIA---QWHQL 134 (134)
T ss_pred CCCeee---EeecC
Confidence 666666 77643
No 158
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.62 E-value=9.4e-15 Score=129.95 Aligned_cols=114 Identities=18% Similarity=0.360 Sum_probs=90.8
Q ss_pred EEEEEeeeec--CCC---CCCCCcEEEEEE--c---CeEEEeeeccCCCCCccCceEEEEccCCC-------CCCeEEEE
Q 008950 431 LSVLVQGAED--VEG---ENHNNPYAIILY--K---GDKKRTKMIRKTRDPAWNEEFQFMLDEPP-------LHEKIHIE 493 (548)
Q Consensus 431 L~V~v~~a~~--L~~---~~~~dpyv~v~l--~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~-------~~~~l~v~ 493 (548)
..++|..|++ |+. .+.+||||++++ . .++.||+++++|.||+|||+|.|.+.... ....|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3456666666 554 357999999997 2 24679999999999999999999996531 13479999
Q ss_pred EEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC---CeEEEEEEEEE
Q 008950 494 VMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK---RGVIHVDIRWK 546 (548)
Q Consensus 494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~---~G~i~l~~~~~ 546 (548)
|||++.. +..|++||++.++|+.+..+.....|++|.++. +|+++++++-|
T Consensus 84 V~d~~~f--~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 84 VYHKGGF--LRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLR 137 (155)
T ss_pred EEeCCCc--ccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEec
Confidence 9999852 257999999999999998877778899988542 89999999876
No 159
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.62 E-value=1.2e-14 Score=126.58 Aligned_cols=111 Identities=17% Similarity=0.277 Sum_probs=92.5
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCe---EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccC
Q 008950 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGD---KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRF 503 (548)
Q Consensus 430 ~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 503 (548)
.++|+|.+|++|+. .+.+||||++.+++. .++|++++++.||.|||+|.|.+... ....|.|+|||++. .
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~---~ 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSF---V 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCC---C
Confidence 58899999999976 357899999998653 46999999999999999999999874 35689999999974 5
Q ss_pred CCCcceEEEEEechhhhcc---ceeceEEEeCCCCCeEEEEEEEEE
Q 008950 504 WSKESLGHVEINLTDVVHN---GRINEKYHLINSKRGVIHVDIRWK 546 (548)
Q Consensus 504 ~~d~~lG~~~i~L~~l~~~---~~~~~w~~L~~~~~G~i~l~~~~~ 546 (548)
+.+++||++.++|+++... .....|++|.. +|+|+|++.+-
T Consensus 78 ~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~ 121 (126)
T cd04043 78 GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME 121 (126)
T ss_pred CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence 6789999999999987542 24568999964 79999988763
No 160
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.62 E-value=1.1e-14 Score=128.27 Aligned_cols=125 Identities=16% Similarity=0.206 Sum_probs=99.6
Q ss_pred ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCC-
Q 008950 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG- 341 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~- 341 (548)
...|.|.|++|++|+.++ +|||.+.+++... .||+++.++.||.|+|.|.|..... ...++|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc
Confidence 467999999999999865 8999999998764 6999999999999999999986443 467999998765322
Q ss_pred ---CCCeeEEEEEECcccCCCCceEEEEeccccccCC---CCCCCccccEEEEEEEEEec
Q 008950 342 ---GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS---DPKDMKQRGKIVVELTYVPF 395 (548)
Q Consensus 342 ---~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~---~~~~~~~~G~l~l~l~~~p~ 395 (548)
++++||.+.|++.++..+...+.|+++....... ........+.|+++++|.+.
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 5789999999999999988888999986532110 00012455899999999986
No 161
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=8.5e-15 Score=126.06 Aligned_cols=106 Identities=30% Similarity=0.522 Sum_probs=92.0
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 504 (548)
|+|.|+|++|++|+.. +.+||||+++++++ .++|++++++.||.|||.|.|.+... .+.|.|+|||++. .+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~---~~ 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEK---VG 75 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCC---CC
Confidence 6899999999999863 58999999999774 57999999999999999999998764 4689999999985 67
Q ss_pred CCcceEEEEEechhhhccceeceEEEeCCCCCeEEE
Q 008950 505 SKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIH 540 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~ 540 (548)
.|++||++.+++.+++.+ ....||.|.++..+++.
T Consensus 76 ~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 76 KDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred CCCeeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 889999999999999887 55899999988777655
No 162
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.62 E-value=7.6e-15 Score=123.25 Aligned_cols=96 Identities=24% Similarity=0.384 Sum_probs=76.1
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEc------
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW------ 337 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~------ 337 (548)
|.|+|++|+||+ +.+||||++.+++.. ....+|+++++|+||+|||+|+|.+. ..+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 689999999996 468999999997632 34579999999999999999999996 367999999998
Q ss_pred -CCCCCCCeeEEEEEECc--ccCCCCceEEEEec
Q 008950 338 -DKVGGHDRLGMQLVPLK--LLTPHETKEFTLDL 368 (548)
Q Consensus 338 -d~~~~dd~lG~~~i~l~--~l~~~~~~~~~l~l 368 (548)
|..++|+.+|.+.+.|. .+.....+...+.+
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISM 107 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence 45678999988887764 44444444444443
No 163
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.61 E-value=7.9e-15 Score=127.05 Aligned_cols=107 Identities=28% Similarity=0.457 Sum_probs=88.7
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEc-CeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC-
Q 008950 431 LSVLVQGAEDVEGE---NHNNPYAIILYK-GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS- 505 (548)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dpyv~v~l~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~- 505 (548)
|+|+|++|++|+.. +.+||||+++++ .+.++|++++++.||.|||.|.|.+.. .+.|.++|||++. ++.
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~---~~~~ 75 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKK---FKKK 75 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCC---CCCC
Confidence 78999999999763 579999999996 566799999999999999999999965 4689999999875 333
Q ss_pred -CcceEEEEEechhhhccc-eeceEEEeCCCC-------CeEEEEEE
Q 008950 506 -KESLGHVEINLTDVVHNG-RINEKYHLINSK-------RGVIHVDI 543 (548)
Q Consensus 506 -d~~lG~~~i~L~~l~~~~-~~~~w~~L~~~~-------~G~i~l~~ 543 (548)
|++||++.++++++.... ....||+|...+ .|+|.+++
T Consensus 76 ~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 76 DQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 689999999999998654 336799995432 67777765
No 164
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.61 E-value=1e-14 Score=129.15 Aligned_cols=89 Identities=31% Similarity=0.617 Sum_probs=80.7
Q ss_pred eEEEEEEeeeecCCCC--CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950 429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK 506 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~--~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d 506 (548)
|.|+|+|++|+||+.. +.+||||+++++++.++|++++++.||+|||.|.|.+.++ ...+.++|||++. ++.|
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~---~~~d 76 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDT---FSKD 76 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCC---CCCC
Confidence 7899999999999753 5789999999999999999999999999999999999875 5689999999985 6789
Q ss_pred cceEEEEEechhhhcc
Q 008950 507 ESLGHVEINLTDVVHN 522 (548)
Q Consensus 507 ~~lG~~~i~L~~l~~~ 522 (548)
++||++.+++.++...
T Consensus 77 d~iG~a~i~l~~l~~~ 92 (145)
T cd04038 77 DSMGEAEIDLEPLVEA 92 (145)
T ss_pred CEEEEEEEEHHHhhhh
Confidence 9999999999998764
No 165
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.61 E-value=9.6e-16 Score=135.22 Aligned_cols=110 Identities=27% Similarity=0.292 Sum_probs=90.5
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v 334 (548)
+....+.|.|+|++|+||+..+ .+.+||||++++.+. ...+++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 4455689999999999999988 788999999998754 2345689999999999999999999853 3356899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~ 369 (548)
||++..+++++||++.++......++...+|.++.
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 99999999999999999977666555555555543
No 166
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.61 E-value=9.9e-15 Score=127.18 Aligned_cols=110 Identities=27% Similarity=0.475 Sum_probs=90.5
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCc-----
Q 008950 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGI----- 501 (548)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~----- 501 (548)
.|+|+|++|++|+.. +.+||||++++++..++|++++++.||.|||.|.|.+..+ .+.|.|+|||++...
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCcccccc
Confidence 689999999999863 5789999999998889999999999999999999998653 458999999987420
Q ss_pred ---cCCCCcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEE
Q 008950 502 ---RFWSKESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDI 543 (548)
Q Consensus 502 ---~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~ 543 (548)
..+.+++||++.+++.++. +....||.|... .+|+|.+++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 0146899999999999874 334789999853 278888764
No 167
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.60 E-value=6.5e-15 Score=125.15 Aligned_cols=99 Identities=22% Similarity=0.442 Sum_probs=82.6
Q ss_pred eEEEEEEeeeecCCC---C-CCCCcEEEEEEcC---eEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccC
Q 008950 429 GLLSVLVQGAEDVEG---E-NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRT 499 (548)
Q Consensus 429 g~L~V~v~~a~~L~~---~-~~~dpyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~ 499 (548)
|+|+|+|++|++|+. . +.+||||++++.+ ..++|++++++.||+|||.|.|.+.... ....|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 689999999999985 3 5789999999853 3469999999999999999999886531 23589999999985
Q ss_pred CccCCCCcceEEEEEechhhhccceeceEEEeCC
Q 008950 500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLIN 533 (548)
Q Consensus 500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~ 533 (548)
++.|++||++.++++++...+ +|+++..
T Consensus 81 ---~~~dd~lG~~~i~l~~l~~~~---~~~~~~~ 108 (111)
T cd04041 81 ---FTADDRLGRVEIDLKELIEDR---NWMGRRE 108 (111)
T ss_pred ---CCCCCcceEEEEEHHHHhcCC---CCCcccc
Confidence 678899999999999998544 6887753
No 168
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=3.3e-14 Score=122.15 Aligned_cols=114 Identities=27% Similarity=0.362 Sum_probs=87.3
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC--CCEEEEEEEEcCCCCCC
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDWDKVGGH 343 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~d~~~~d 343 (548)
|.|+|++|++|+.. |.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999998743 368999888 99999999999986532 34678888888766566
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (548)
Q Consensus 344 d~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 392 (548)
..+|.+. +..+..+.....|++|... . ......|+|++++.|
T Consensus 76 ~~~g~v~--l~~~~~~~~~~~w~~L~~~----~-~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVA--LSKLDLGQGKDEWFPLTPV----D-PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEE--ecCcCCCCcceeEEECccC----C-CCCCcCceEEEEEEC
Confidence 6666655 5555556667788887432 1 124578999999976
No 169
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.59 E-value=3e-14 Score=123.76 Aligned_cols=104 Identities=27% Similarity=0.550 Sum_probs=90.7
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeccC-CCCCccCceEEEEccCCC--CCCeEEEEEEEccCCcc
Q 008950 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIR 502 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~ 502 (548)
|.|.|+|++|++|+.. +.+||||+++++++.++|++.++ +.||.|||.|.|.+..+. ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~--- 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN--- 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc---
Confidence 6799999999999763 57999999999998899999885 899999999999998752 24589999999985
Q ss_pred CCCCcceEEEEEechhhhccceeceEEEeCCCC
Q 008950 503 FWSKESLGHVEINLTDVVHNGRINEKYHLINSK 535 (548)
Q Consensus 503 ~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~ 535 (548)
+..+++||++.+++.+++.++....|++|...+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~ 110 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVPAK 110 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence 568899999999999999888788999998754
No 170
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.59 E-value=1.1e-14 Score=123.55 Aligned_cols=97 Identities=32% Similarity=0.514 Sum_probs=80.5
Q ss_pred EEEEEecCccccCCCCCCCcEEEEEEcCc---ccceeeeeeecCCCCCeeeceEEEEEecCC----CCEEEEEEEEcCCC
Q 008950 268 VKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKV 340 (548)
Q Consensus 268 V~V~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~d~~ 340 (548)
+-.++|++|+..|..|.+||||++++.++ ....++|++++++.||+|| +|.|.+.+.. .+.|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 34569999999999999999999998764 2335799999999999999 6888764322 57899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEEE
Q 008950 341 GGHDRLGMQLVPLKLLTPHETKEFT 365 (548)
Q Consensus 341 ~~dd~lG~~~i~l~~l~~~~~~~~~ 365 (548)
++|++||++.++++++.....+++.
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~~ 107 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEFE 107 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceEE
Confidence 9999999999999999866555443
No 171
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.58 E-value=1.1e-15 Score=149.96 Aligned_cols=107 Identities=32% Similarity=0.477 Sum_probs=90.9
Q ss_pred CCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecC-CCCEEEEEEEEc
Q 008950 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDW 337 (548)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~v~d~ 337 (548)
.....|+|+|.+|+||.++|.+|.|||||++.+-+.. ..+++|++++.++||+|||+|.|.+... ....|.|+|||+
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 3456899999999999999999999999999997643 2346899999999999999999999643 367899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 338 d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
|+.+++||+|..++.+++|.... ..-|+.|
T Consensus 257 DrTsRNDFMGslSFgisEl~K~p-~~GWyKl 286 (683)
T KOG0696|consen 257 DRTSRNDFMGSLSFGISELQKAP-VDGWYKL 286 (683)
T ss_pred cccccccccceecccHHHHhhcc-hhhHHHH
Confidence 99999999999999999998653 3334444
No 172
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.58 E-value=1.2e-14 Score=125.42 Aligned_cols=93 Identities=28% Similarity=0.473 Sum_probs=80.8
Q ss_pred CceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950 427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 427 ~~g~L~V~v~~a~~L~~--~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 504 (548)
..|.|+|+|++|++|+. .+.+||||+++++++.++|++++++.||+|||+|.|........+.|.|+|||++. ++
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~---~s 102 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN---GW 102 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC---CC
Confidence 46899999999999975 35789999999999999999999999999999999975443356799999999985 67
Q ss_pred CCcceEEEEEechhhhcc
Q 008950 505 SKESLGHVEINLTDVVHN 522 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~~ 522 (548)
.|++||++.++|.....+
T Consensus 103 ~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 103 DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCeeEEEEEEecCCcee
Confidence 899999999999976643
No 173
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=2.6e-14 Score=122.76 Aligned_cols=109 Identities=21% Similarity=0.349 Sum_probs=86.3
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCccCCCCcc
Q 008950 431 LSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGIRFWSKES 508 (548)
Q Consensus 431 L~V~v~~a~~L~~~~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~d~~ 508 (548)
|.|+|++|++|+..+.+||||+++++++. ++|+++++ .||.|||+|.|.+...... ..+.+.++|++. ...+..
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~---~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS---KDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc---CCCeeE
Confidence 68999999999987889999999998864 69999999 9999999999999764222 367788888763 445667
Q ss_pred eEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 008950 509 LGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRW 545 (548)
Q Consensus 509 lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~ 545 (548)
+|.+.+.. +..++..++||+|.+.. .|+|+++++|
T Consensus 78 ~g~v~l~~--~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSK--LDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecC--cCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 77766554 44456668999997642 7999999975
No 174
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.58 E-value=1.9e-14 Score=126.45 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=88.3
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~-- 457 (548)
.|+|.+++.|.+. .+.|.|+|++|++|+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~y~~~--------------------------------~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~ 49 (133)
T cd04009 2 YGVLTVKAYYRAS--------------------------------EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRH 49 (133)
T ss_pred ceEEEEEEEEcCC--------------------------------CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCC
Confidence 6999999998753 4679999999999986 35799999999953
Q ss_pred -----eEEEeeeccCCCCCccCceEEEEccCCC---CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhc
Q 008950 458 -----DKKRTKMIRKTRDPAWNEEFQFMLDEPP---LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVH 521 (548)
Q Consensus 458 -----~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~ 521 (548)
..++|+++++|.||+|||+|.|.+...+ ....|.++|||++. ++.+++||++.++|+++..
T Consensus 50 ~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~---~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 50 LFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDL---LGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCC---CCCCcEeEEEEEeHHHCCc
Confidence 3579999999999999999999987632 23589999999984 6779999999999999875
No 175
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.58 E-value=2.8e-15 Score=132.11 Aligned_cols=109 Identities=36% Similarity=0.408 Sum_probs=91.3
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCC--CCEEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v 334 (548)
+....+.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 344568999999999999999888999999999997642 33568999999999999999999986543 57899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~ 369 (548)
||++..+++++||++.+++++ .+.....|+++.
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~ 121 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEML 121 (134)
T ss_pred EecCCCCCCceeEEEEECCCC--CCcHHHHHHHHH
Confidence 999988899999999999999 444555666664
No 176
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.58 E-value=1.4e-14 Score=127.12 Aligned_cols=105 Identities=35% Similarity=0.503 Sum_probs=90.4
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecC-CCCEEEEEEEEcCCC
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDWDKV 340 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~v~d~d~~ 340 (548)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999742 22347899999999999999999998653 256899999999988
Q ss_pred CCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950 341 GGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (548)
Q Consensus 341 ~~dd~lG~~~i~l~~l~~~~~~~~~l~l~ 369 (548)
+++++||++.++++++... ....|++|.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~ 120 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLL 120 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECc
Confidence 8999999999999999865 566777774
No 177
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.57 E-value=2.2e-14 Score=124.78 Aligned_cols=108 Identities=27% Similarity=0.445 Sum_probs=90.2
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcC-eEEEeeecc-CCCCCccCceEEEEccCCC---CCCeEEEEEEEccCCcc
Q 008950 431 LSVLVQGAEDVEGE---NHNNPYAIILYKG-DKKRTKMIR-KTRDPAWNEEFQFMLDEPP---LHEKIHIEVMSKRTGIR 502 (548)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dpyv~v~l~~-~~~kT~v~~-~t~nP~wne~f~f~v~~~~---~~~~l~v~V~d~~~~~~ 502 (548)
|+|+|++|++|+.. +.+||||++++++ +.++|+++. ++.||.|||.|.|.+.... ....|.++|+|++.
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~--- 78 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP--- 78 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC---
Confidence 78999999999863 5799999999988 778999975 5899999999999998752 15689999999874
Q ss_pred CCCCcceEEEEEechhhhccce-----eceEEEeCCC---CCeEEEE
Q 008950 503 FWSKESLGHVEINLTDVVHNGR-----INEKYHLINS---KRGVIHV 541 (548)
Q Consensus 503 ~~~d~~lG~~~i~L~~l~~~~~-----~~~w~~L~~~---~~G~i~l 541 (548)
++.|++||++.++|.++..+.. ...||+|.+. +.|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 5678999999999999987653 3689999864 3777764
No 178
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.56 E-value=7e-14 Score=122.09 Aligned_cols=119 Identities=30% Similarity=0.414 Sum_probs=93.5
Q ss_pred EEEEEEEEecCccccC--CCCCCCcEEEEEEcCcc---cceeeeeeecCCC-CCeeeceEEEEEecCCCCEEEEEEEEcC
Q 008950 265 ILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEK---LPWKKTTVKKKNL-NPEWNENFKLVVKEPESQILQLQVFDWD 338 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d--~~g~~dpyv~v~l~~~~---~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~~~~L~v~v~d~d 338 (548)
.|+|+|++|+||+..+ ..+.+||||++++.+.. ..+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 5899999999999887 57889999999996432 2457898887665 9999999999998766668999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (548)
Q Consensus 339 ~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 392 (548)
.. ++++||++.++++++..+. .+++|... .......|.|.+.+++
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~-----~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDS-----KGEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCC-----CCCCCcceeEEEEEEE
Confidence 87 8999999999999996542 34455321 0112456888888764
No 179
>PLN03008 Phospholipase D delta
Probab=99.55 E-value=4.7e-14 Score=152.05 Aligned_cols=97 Identities=19% Similarity=0.542 Sum_probs=86.0
Q ss_pred CCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccce
Q 008950 446 HNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR 524 (548)
Q Consensus 446 ~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~ 524 (548)
.+||||+|.+++++ .||++++++.||+|||+|.|.|.++ ...|.++|+|++. + +++.||++.|+|+++..+..
T Consensus 76 tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~---~-gaD~IG~a~IPL~~L~~Ge~ 149 (868)
T PLN03008 76 TSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDV---F-GAQIIGTAKIPVRDIASGER 149 (868)
T ss_pred CCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCc---c-CCceeEEEEEEHHHcCCCCc
Confidence 57999999998765 4999999999999999999999885 3589999999874 4 46899999999999999988
Q ss_pred eceEEEeCCC------CCeEEEEEEEEEeC
Q 008950 525 INEKYHLINS------KRGVIHVDIRWKMI 548 (548)
Q Consensus 525 ~~~w~~L~~~------~~G~i~l~~~~~~~ 548 (548)
.+.|++|.+. ++|+|+++++|+|+
T Consensus 150 vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 150 ISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred eEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 8999999765 26899999999985
No 180
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.54 E-value=3.9e-14 Score=124.84 Aligned_cols=102 Identities=27% Similarity=0.391 Sum_probs=88.0
Q ss_pred EEEEEeeeecCCC--CCCCCcEEEEEEc----CeEEEeeeccCCCCCccCceEEEEccCCC--------------CCCeE
Q 008950 431 LSVLVQGAEDVEG--ENHNNPYAIILYK----GDKKRTKMIRKTRDPAWNEEFQFMLDEPP--------------LHEKI 490 (548)
Q Consensus 431 L~V~v~~a~~L~~--~~~~dpyv~v~l~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------------~~~~l 490 (548)
|+|+|++|++|+. .+.+||||+++++ +..++|++++++.||.|||+|.|.+.... ....+
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 5789999999985 3689999999998 67789999999999999999999987742 23589
Q ss_pred EEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC
Q 008950 491 HIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK 535 (548)
Q Consensus 491 ~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~ 535 (548)
.|+|||.+. .+.+++||++.+++.++........||+|...+
T Consensus 81 ~i~V~d~~~---~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 81 RVELWHASM---VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEcCCc---CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 999999985 568999999999999998777778999998754
No 181
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3.5e-15 Score=142.37 Aligned_cols=224 Identities=29% Similarity=0.406 Sum_probs=165.4
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEE--EEecC-CCCEEEEE
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKL--VVKEP-ESQILQLQ 333 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f--~v~~~-~~~~L~v~ 333 (548)
++.....+..++..|++|+.++.++..|||++..+++. +..+.+|++..+++||.|||+-.. ...+. ....+++.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 34455778999999999999999999999999999764 233457888899999999976544 33332 24567889
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccC--CCCCCCccccEEEEEEEEEecccCccccccccccccc
Q 008950 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI--SDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSR 411 (548)
Q Consensus 334 v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~--~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~ 411 (548)
|.|.+.+..++++|+..+++..+.+.+.+.+..-|.+.+.+ .+......+|++.+++.|-..
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~---------------- 231 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSST---------------- 231 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcC----------------
Confidence 99999999999999999999999887665443322222211 111123567888888866543
Q ss_pred CCCCCCCCCcccccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-----EEEeeeccCCCCCccCceEEEEccC
Q 008950 412 KGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDE 483 (548)
Q Consensus 412 ~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~ 483 (548)
..-+.+++.+|..|.. ++.+||||..++... ++||.+.++|.||.||+.|.|.+..
T Consensus 232 ----------------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~p 295 (362)
T KOG1013|consen 232 ----------------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGP 295 (362)
T ss_pred ----------------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCc
Confidence 3446778888877754 568999999998542 3599999999999999999999876
Q ss_pred CCC-CCeEEEEEEEccCCccCCCCcceEEEEEech
Q 008950 484 PPL-HEKIHIEVMSKRTGIRFWSKESLGHVEINLT 517 (548)
Q Consensus 484 ~~~-~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~ 517 (548)
... ..++.|.|||.+.+ .+.+++|-....+.
T Consensus 296 gdLa~~kv~lsvgd~~~G---~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 296 GDLAYKKVALSVGDYDIG---KSNDSIGGSMLGGY 327 (362)
T ss_pred cchhcceEEEeecccCCC---cCccCCCccccccc
Confidence 533 24889999998753 46677777666554
No 182
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.54 E-value=5.9e-15 Score=144.95 Aligned_cols=107 Identities=22% Similarity=0.433 Sum_probs=92.6
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT 499 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 499 (548)
...|.|+|.+|+||-. +|.+||||++.+-. .++||++++.++||+|||+|+|.+.....+..|.|+|||++.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 4679999999999954 67899999999943 346999999999999999999999887667799999999985
Q ss_pred CccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeE
Q 008950 500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGV 538 (548)
Q Consensus 500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~ 538 (548)
.++++++|++++.+++|+.... +.||.|.+...|+
T Consensus 259 ---TsRNDFMGslSFgisEl~K~p~-~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 259 ---TSRNDFMGSLSFGISELQKAPV-DGWYKLLSQEEGE 293 (683)
T ss_pred ---cccccccceecccHHHHhhcch-hhHHHHhhhhcCc
Confidence 6889999999999999987653 7899998876554
No 183
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=1.3e-13 Score=118.03 Aligned_cols=100 Identities=26% Similarity=0.407 Sum_probs=86.8
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK 506 (548)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d 506 (548)
|+|+|++|++|+.. +.+||||++.+++.. ++|+++.++.||.|||+|.|.+... ..+.+.++|||++. .+.+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~---~~~~ 76 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR---GGKD 76 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCC---CCCC
Confidence 57899999999863 478999999997644 6999999999999999999999764 45689999999985 5788
Q ss_pred cceEEEEEechhhhccceeceEEEeCCC
Q 008950 507 ESLGHVEINLTDVVHNGRINEKYHLINS 534 (548)
Q Consensus 507 ~~lG~~~i~L~~l~~~~~~~~w~~L~~~ 534 (548)
++||++.+++.++..+.....|++|...
T Consensus 77 ~~iG~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 77 DLLGSAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred CceEEEEEEHHHcCCCCcEEEEEECcCC
Confidence 9999999999999888777899999865
No 184
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.53 E-value=2e-13 Score=118.47 Aligned_cols=108 Identities=24% Similarity=0.460 Sum_probs=88.9
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950 430 LLSVLVQGAEDVEG--ENHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK 506 (548)
Q Consensus 430 ~L~V~v~~a~~L~~--~~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d 506 (548)
.|.|+|.+|+.+.. .+.+||||+++++++ .++|++++++.||.|||.|.|.+.. .+.|.|+|||++. .+.+
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~---~~~~ 76 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHT---LKAD 76 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCC---CCCC
Confidence 58899999984433 346999999999887 7899999999999999999999864 3689999999985 6789
Q ss_pred cceEEEEEechhhhccce-----eceEEEeCCCC------CeEEEEEE
Q 008950 507 ESLGHVEINLTDVVHNGR-----INEKYHLINSK------RGVIHVDI 543 (548)
Q Consensus 507 ~~lG~~~i~L~~l~~~~~-----~~~w~~L~~~~------~G~i~l~~ 543 (548)
++||++.++|.+++.... ...|++|.... .|++.+++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 999999999999986432 33589996433 78888875
No 185
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.53 E-value=8.3e-14 Score=124.15 Aligned_cols=98 Identities=23% Similarity=0.432 Sum_probs=83.3
Q ss_pred cCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-----------------------------EEEeeeccCCCCCc
Q 008950 425 LSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-----------------------------KKRTKMIRKTRDPA 472 (548)
Q Consensus 425 ~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~-----------------------------~~kT~v~~~t~nP~ 472 (548)
.+..+.|.|+|++|++|.. .+.+||||++.+... .++|++++++.||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 3458999999999999975 467999999998532 25899999999999
Q ss_pred cCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEe
Q 008950 473 WNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHL 531 (548)
Q Consensus 473 wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L 531 (548)
|||+|.|.+... ..+.|.|+|||++ +++||++.++++++.. ...++||+|
T Consensus 104 WnE~F~f~v~~~-~~~~L~i~V~D~d-------d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDV-SNDQLHLDIWDHD-------DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cccEEEEEeccC-CCCEEEEEEEecC-------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999775 3568999999985 5899999999999984 446899987
No 186
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.52 E-value=2.8e-13 Score=118.74 Aligned_cols=111 Identities=22% Similarity=0.319 Sum_probs=87.3
Q ss_pred EEEEEEeeeecCCCC--CCCCcEEEEEEcC-------------eEEEeeeccCCCCCcc-CceEEEEccCCCCCCeEEEE
Q 008950 430 LLSVLVQGAEDVEGE--NHNNPYAIILYKG-------------DKKRTKMIRKTRDPAW-NEEFQFMLDEPPLHEKIHIE 493 (548)
Q Consensus 430 ~L~V~v~~a~~L~~~--~~~dpyv~v~l~~-------------~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~v~ 493 (548)
...|++++|+||+.. +.+||||++++.+ +.++|++++++.||+| ||+|.|.+.. ++.|.++
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEE
Confidence 357889999999752 6899999999953 3579999999999999 9999999854 3689999
Q ss_pred EEEccCCccCCCCcceEEEEEechhhhccc---eeceEEEeCCCC-----CeEEEEEE
Q 008950 494 VMSKRTGIRFWSKESLGHVEINLTDVVHNG---RINEKYHLINSK-----RGVIHVDI 543 (548)
Q Consensus 494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~---~~~~w~~L~~~~-----~G~i~l~~ 543 (548)
|||++.......+++||++.+++++++... ....||+|.... +|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999764201113799999999999998753 356799987542 68777765
No 187
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.51 E-value=7.2e-14 Score=112.26 Aligned_cols=85 Identities=36% Similarity=0.603 Sum_probs=76.9
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~ 345 (548)
|+|+|++|+||+..+..+.+||||++++++.....++|+++.++.+|.|||+|.|.+..+..+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999999865445799999999999999999999877777789999999999988999
Q ss_pred eEEEE
Q 008950 346 LGMQL 350 (548)
Q Consensus 346 lG~~~ 350 (548)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 188
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.51 E-value=1.9e-13 Score=118.52 Aligned_cols=106 Identities=24% Similarity=0.377 Sum_probs=87.3
Q ss_pred ccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 008950 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (548)
Q Consensus 383 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~~-- 457 (548)
.|+|++++.|.+. .+.|+|+|.+|++|+.. +.+||||++++.+
T Consensus 1 ~G~~~~~l~y~~~--------------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~ 48 (123)
T cd04035 1 LGTLEFTLLYDPA--------------------------------NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGA 48 (123)
T ss_pred CcEEEEEEEEeCC--------------------------------CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCC
Confidence 3899999999874 47899999999999863 5789999999842
Q ss_pred ---eEEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccce
Q 008950 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGR 524 (548)
Q Consensus 458 ---~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~ 524 (548)
..++|++++++.||.|||.|.|...... ....+.++|||++. . ++++||++.++|+++..++.
T Consensus 49 ~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~---~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 49 SKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR---F-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred CCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC---c-CCeeEEEEEEEcccCCCCcc
Confidence 3579999999999999999999633311 23589999999974 5 78999999999999987654
No 189
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.49 E-value=8.1e-14 Score=163.56 Aligned_cols=122 Identities=21% Similarity=0.368 Sum_probs=103.7
Q ss_pred cCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC-CCEEEEEEEEcC
Q 008950 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (548)
Q Consensus 260 ~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d 338 (548)
....|.|+|+|++|+||. +..|.+||||++.++++.. +||++++++.||+|||.|+|.+.++. ++.+.++|||+|
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 445799999999999998 4478999999999997642 58999999999999999999998765 467999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccE---EEEEEEEEe
Q 008950 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGK---IVVELTYVP 394 (548)
Q Consensus 339 ~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~---l~l~l~~~p 394 (548)
.+++ +.+|.+++++.++..+.....+++|.. +++..|+ |++++.|.+
T Consensus 2052 ~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2052 TFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ccCC-CCCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence 9854 599999999999998888888888753 2345677 999998865
No 190
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.48 E-value=6.5e-13 Score=111.61 Aligned_cols=107 Identities=21% Similarity=0.364 Sum_probs=77.9
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCC----c
Q 008950 431 LSVLVQGAEDVEGENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG----I 501 (548)
Q Consensus 431 L~V~v~~a~~L~~~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~----~ 501 (548)
|.|+|++|+||.+ .+||||++.+.. ...||+++++|.||+|||+|+|.+.. .+.|.+.|||++.. .
T Consensus 1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccc
Confidence 5799999999975 589999999854 23699999999999999999999864 46899999998411 1
Q ss_pred cCCCCcceEEEEEec--hhhhccceeceEEEeCCCCCeEEEEEEEE
Q 008950 502 RFWSKESLGHVEINL--TDVVHNGRINEKYHLINSKRGVIHVDIRW 545 (548)
Q Consensus 502 ~~~~d~~lG~~~i~L--~~l~~~~~~~~w~~L~~~~~G~i~l~~~~ 545 (548)
..+.|+.+|+..+.| +.+..++.....+.|.+ =.|.++|+|
T Consensus 76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~~ 118 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIKF 118 (118)
T ss_pred ccCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEeC
Confidence 256799997666665 44444444445566542 245555543
No 191
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.44 E-value=4.4e-13 Score=116.23 Aligned_cols=88 Identities=25% Similarity=0.386 Sum_probs=76.0
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeE--EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDK--KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 430 ~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~--~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 504 (548)
+++|+|++|++|+. .+.+||||++++++.. .+|++++++.||+|||+|.|.+..+ ..+.|.++|||++. ++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~---~~ 76 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDL---LG 76 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCC---CC
Confidence 37899999999976 3579999999998865 4788899999999999999998664 45689999999974 67
Q ss_pred CCcceEEEEEechhhhc
Q 008950 505 SKESLGHVEINLTDVVH 521 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~ 521 (548)
.|++||++.++|++...
T Consensus 77 ~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 77 SDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCceeEEEEEeeccccc
Confidence 89999999999998764
No 192
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.43 E-value=8.9e-13 Score=113.71 Aligned_cols=98 Identities=16% Similarity=0.248 Sum_probs=80.2
Q ss_pred EeeeecCCC---CCCCCcEEEEEEcCeE-------EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCc-cC
Q 008950 435 VQGAEDVEG---ENHNNPYAIILYKGDK-------KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGI-RF 503 (548)
Q Consensus 435 v~~a~~L~~---~~~~dpyv~v~l~~~~-------~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~-~~ 503 (548)
.++|++|+. .+.+||||++++.+.. ++|++++++.||+|||+|.|.+... ..+.+.++|||++... ..
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCCC
Confidence 378899975 3578999999997653 6999999999999999999986543 3468999999998410 04
Q ss_pred CCCcceEEEEEechhhhccceeceEEEeCC
Q 008950 504 WSKESLGHVEINLTDVVHNGRINEKYHLIN 533 (548)
Q Consensus 504 ~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~ 533 (548)
+.+++||++.+++++++.+.....|++|..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 688999999999999998776678999943
No 193
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=3.2e-13 Score=138.12 Aligned_cols=127 Identities=26% Similarity=0.410 Sum_probs=103.1
Q ss_pred ccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcC
Q 008950 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (548)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d 338 (548)
.......++++|++|.+|..+|..|++||||.+.++..+ ++|+++...+||+|||.|.|..++ .++.++++|||.|
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded 365 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDED 365 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCc
Confidence 355678899999999999999999999999999999765 589999999999999999999987 5679999999988
Q ss_pred CC-----------CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecc
Q 008950 339 KV-----------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (548)
Q Consensus 339 ~~-----------~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 396 (548)
.. .+|||+|+..|.++.+...-..|+.++ ++.+ ....+|.|++.+...-..
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtlsgemdvwynle--krtd-----ksavsgairlhisveikg 427 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLE--KRTD-----KSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEecccchhhhcchh--hccc-----hhhccceEEEEEEEEEcC
Confidence 43 368999999999999987666655554 2211 246788777766554433
No 194
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.42 E-value=3.9e-12 Score=111.02 Aligned_cols=108 Identities=19% Similarity=0.366 Sum_probs=88.0
Q ss_pred EEEEEEeeeecCCC-----CCCCCcEEEEEEc------CeEEEeeeccCCC-CCccCceEEEEccCCCCCCeEEEEEEEc
Q 008950 430 LLSVLVQGAEDVEG-----ENHNNPYAIILYK------GDKKRTKMIRKTR-DPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (548)
Q Consensus 430 ~L~V~v~~a~~L~~-----~~~~dpyv~v~l~------~~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~~l~v~V~d~ 497 (548)
.|+|+|++|+||+. .+..||||++++. ...++|++++++. ||.|||+|.|.+..+ ....|.++|+|+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence 58999999999975 3478999999994 3457999988776 999999999998864 345799999998
Q ss_pred cCCccCCCCcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEE
Q 008950 498 RTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDIRW 545 (548)
Q Consensus 498 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 545 (548)
+. . ++++||++.++++++..+ .+|++|.+. ..|.|.+.++.
T Consensus 82 ~~---~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DS---G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CC---C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 74 4 889999999999998543 368899653 36888888875
No 195
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=4.6e-12 Score=131.70 Aligned_cols=133 Identities=25% Similarity=0.314 Sum_probs=110.7
Q ss_pred CccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 008950 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (548)
Q Consensus 380 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v~l~ 456 (548)
....|.|++++.|... ...|.|+|.+|++|+.. +.+||||++++.
T Consensus 150 ~~~~G~l~fsl~Yd~~--------------------------------~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~ll 197 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFE--------------------------------LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLL 197 (421)
T ss_pred ceeeeeEEEEEEeccc--------------------------------CCEEEEEEEEecCCCcccCCCCCCCeeEEEEc
Confidence 4678999999988853 57899999999999874 468999999996
Q ss_pred Ce---EEEeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeC
Q 008950 457 GD---KKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLI 532 (548)
Q Consensus 457 ~~---~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~ 532 (548)
.. +.+|++.++|+||+|||+|.|.+.... ....|.+.|||.+. +++++++|.+.++|..+........|.+|.
T Consensus 198 Pdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr---fsr~~~iGev~~~l~~~~~~~~~~~w~~l~ 274 (421)
T KOG1028|consen 198 PDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR---FSRHDFIGEVILPLGEVDLLSTTLFWKDLQ 274 (421)
T ss_pred CCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC---cccccEEEEEEecCccccccccceeeeccc
Confidence 54 359999999999999999999976542 34589999999985 899999999999998887666567799987
Q ss_pred CC------CCeEEEEEEEEEe
Q 008950 533 NS------KRGVIHVDIRWKM 547 (548)
Q Consensus 533 ~~------~~G~i~l~~~~~~ 547 (548)
.. ..|+|.+++.+-|
T Consensus 275 ~~~~~~~~~~gel~~sL~Y~p 295 (421)
T KOG1028|consen 275 PSSTDSEELAGELLLSLCYLP 295 (421)
T ss_pred cccCCcccccceEEEEEEeec
Confidence 64 2479999998876
No 196
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.38 E-value=1.2e-12 Score=140.50 Aligned_cols=92 Identities=28% Similarity=0.390 Sum_probs=82.3
Q ss_pred ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (548)
.-.++|.|++|-+|.+.|.+|.+|||+++.+|+... ..++..+.+|+||+|++.|++....+....++++|||+|..+.
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 346779999999999999999999999999997654 2467888999999999999999888878889999999999999
Q ss_pred CCeeEEEEEECcc
Q 008950 343 HDRLGMQLVPLKL 355 (548)
Q Consensus 343 dd~lG~~~i~l~~ 355 (548)
|+.+|+..++|+.
T Consensus 691 d~~iget~iDLEn 703 (1105)
T KOG1326|consen 691 DEKIGETTIDLEN 703 (1105)
T ss_pred cchhhceehhhhh
Confidence 9999999999864
No 197
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.36 E-value=6.4e-12 Score=108.62 Aligned_cols=94 Identities=33% Similarity=0.352 Sum_probs=80.1
Q ss_pred EEEEEEEecCccccC--CCC--CCCcEEEEEEcCcccceeeeeeecCCCC--CeeeceEEEEEecC--------------
Q 008950 266 LHVKVVRASKLLKKD--FLG--TSDPYVKLSLTGEKLPWKKTTVKKKNLN--PEWNENFKLVVKEP-------------- 325 (548)
Q Consensus 266 L~V~V~~A~~L~~~d--~~g--~~dpyv~v~l~~~~~~~~~T~v~~~t~n--P~Wne~f~f~v~~~-------------- 325 (548)
|+|.|.+|++++..+ ..| .+||||++.+.+....+++|.+..+++| |.||+.|.|.+.-+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966543 356 4999999999986555679999999999 99999999887541
Q ss_pred ---------CCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCC
Q 008950 326 ---------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (548)
Q Consensus 326 ---------~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~ 359 (548)
....|.++|||.|.+++|++||++.++|..+..+
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 2568999999999999999999999999988765
No 198
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.32 E-value=1.5e-11 Score=104.34 Aligned_cols=92 Identities=21% Similarity=0.406 Sum_probs=73.1
Q ss_pred EEeeeecCCCC---CCCCcEEEEEEcCe------EEEeeeccCCCCCccCceEEEEccCCC---CCCeEEEEEEEccCCc
Q 008950 434 LVQGAEDVEGE---NHNNPYAIILYKGD------KKRTKMIRKTRDPAWNEEFQFMLDEPP---LHEKIHIEVMSKRTGI 501 (548)
Q Consensus 434 ~v~~a~~L~~~---~~~dpyv~v~l~~~------~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~~l~v~V~d~~~~~ 501 (548)
..++|++|+.. +.+||||++++.+. .++|++++++.||+|| .|.|.+...+ ..+.|.++|||++.
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~-- 81 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS-- 81 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC--
Confidence 34689999763 57999999998653 3799999999999999 6888865432 14689999999985
Q ss_pred cCCCCcceEEEEEechhhhccceeceEEEe
Q 008950 502 RFWSKESLGHVEINLTDVVHNGRINEKYHL 531 (548)
Q Consensus 502 ~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L 531 (548)
.+.|++||+++++++++..+. .++|.+
T Consensus 82 -~~~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 82 -SGKHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred -CCCCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 678999999999999998543 345554
No 199
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.31 E-value=1.8e-11 Score=101.12 Aligned_cols=96 Identities=45% Similarity=0.659 Sum_probs=82.5
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~ 345 (548)
|.|+|++|++|...+..+..+|||++++.+.....++|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 68999999999988765688999999998752223689999999999999999999987657899999999998777899
Q ss_pred eEEEEEECcccCCCCc
Q 008950 346 LGMQLVPLKLLTPHET 361 (548)
Q Consensus 346 lG~~~i~l~~l~~~~~ 361 (548)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999999876643
No 200
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=7.3e-12 Score=128.30 Aligned_cols=117 Identities=22% Similarity=0.430 Sum_probs=97.0
Q ss_pred cccCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950 423 EALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT 499 (548)
Q Consensus 423 ~~~~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 499 (548)
+.+.-++.++++|.+|++|.. .|.+||||.+.++..+++|+++...+||+|||.|+|.|++. .+.|.+.|||++.
T Consensus 289 gsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded~ 366 (1283)
T KOG1011|consen 289 GSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDEDN 366 (1283)
T ss_pred cccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCcc
Confidence 344457889999999999976 46899999999999999999999999999999999999984 5789999999886
Q ss_pred Ccc--------CCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEE
Q 008950 500 GIR--------FWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDI 543 (548)
Q Consensus 500 ~~~--------~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~ 543 (548)
.+. ..+|++||+..|.+..+- +.++-||+|+... +|-|++.+
T Consensus 367 dlksklrqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhi 421 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 421 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEE
Confidence 421 357999999999988763 4567899997642 67776655
No 201
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.25 E-value=5.5e-11 Score=97.90 Aligned_cols=99 Identities=44% Similarity=0.646 Sum_probs=82.8
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCe
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~ 345 (548)
|.|+|++|++|......+..+|||.+.+.+. ..++|.++.++.||.|||.|.|.+.......+.++||+.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 4789999999988766778999999999872 23689999999999999999999976456789999999998877899
Q ss_pred eEEEEEECcccC-CCCceEEEE
Q 008950 346 LGMQLVPLKLLT-PHETKEFTL 366 (548)
Q Consensus 346 lG~~~i~l~~l~-~~~~~~~~l 366 (548)
+|.+.+++.++. .......|+
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~ 100 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWL 100 (102)
T ss_pred eEEEEEeHHHhhhcCCcCccee
Confidence 999999999988 444444443
No 202
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.24 E-value=2.7e-11 Score=97.17 Aligned_cols=79 Identities=34% Similarity=0.657 Sum_probs=68.9
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC---eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 431 L~V~v~~a~~L~~---~~~~dpyv~v~l~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 504 (548)
|+|+|++|+||+. .+.+||||++.+++ ..++|++++++.+|.|||.|.|.+..+ ..+.|.|+|||.+. ..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~~l~~~V~~~~~---~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDP-DLDSLSFEVWDKDS---FG 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHG-CGTEEEEEEEEETS---SS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecc-cccceEEEEEECCC---CC
Confidence 6899999999987 45899999999988 678999999999999999999997775 34569999999985 56
Q ss_pred CCcceEEEE
Q 008950 505 SKESLGHVE 513 (548)
Q Consensus 505 ~d~~lG~~~ 513 (548)
.|++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 699999874
No 203
>PLN02270 phospholipase D alpha
Probab=99.19 E-value=2e-10 Score=124.37 Aligned_cols=115 Identities=17% Similarity=0.348 Sum_probs=99.0
Q ss_pred ceEEEEEEeeeecCCC---------------------CCCCCcEEEEEEcCeEE-EeeeccCC-CCCccCceEEEEccCC
Q 008950 428 AGLLSVLVQGAEDVEG---------------------ENHNNPYAIILYKGDKK-RTKMIRKT-RDPAWNEEFQFMLDEP 484 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~---------------------~~~~dpyv~v~l~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~ 484 (548)
-|.|.++|.+|++|+. ++.+||||.|.+++.+. +|+++.+. .||+|||+|..+|...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 3789999999998873 13679999999999876 99999884 6999999999999875
Q ss_pred CCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC------CeEEEEEEEEEeC
Q 008950 485 PLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK------RGVIHVDIRWKMI 548 (548)
Q Consensus 485 ~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~------~G~i~l~~~~~~~ 548 (548)
...+.|.|.|.+ .-+..+||.+.||..+++++..+++||++.+.. ..+|+++++|+|+
T Consensus 87 --~~~v~f~vkd~~----~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 --ASNIIFTVKDDN----PIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred --cceEEEEEecCC----ccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 357999999987 456779999999999999999999999998752 4599999999985
No 204
>PLN02223 phosphoinositide phospholipase C
Probab=99.15 E-value=2.1e-10 Score=119.52 Aligned_cols=98 Identities=27% Similarity=0.448 Sum_probs=82.3
Q ss_pred ceEEEEEEEEecCccc-----cCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEE
Q 008950 263 VGILHVKVVRASKLLK-----KDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~-----~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~ 335 (548)
...|.|+|++|.+++. .+.....||||+|.+.|-. ...++|++..++.||+|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4679999999998751 1223467999999997632 23457888889999999999999999888888999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCC
Q 008950 336 DWDKVGGHDRLGMQLVPLKLLTPHE 360 (548)
Q Consensus 336 d~d~~~~dd~lG~~~i~l~~l~~~~ 360 (548)
|+|..++|+|+|++.+|++.|..|-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9998888999999999999999884
No 205
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.15 E-value=1.6e-10 Score=99.99 Aligned_cols=90 Identities=26% Similarity=0.385 Sum_probs=75.5
Q ss_pred EEEEEeeeecCCC-----CC--CCCcEEEEEEcC---eEEEeeeccCCCC--CccCceEEEEccCCCC------------
Q 008950 431 LSVLVQGAEDVEG-----EN--HNNPYAIILYKG---DKKRTKMIRKTRD--PAWNEEFQFMLDEPPL------------ 486 (548)
Q Consensus 431 L~V~v~~a~~L~~-----~~--~~dpyv~v~l~~---~~~kT~v~~~t~n--P~wne~f~f~v~~~~~------------ 486 (548)
|+|.|.+|+|++. .| .+||||++.+.+ .+++|.+.+++.| |.||++|.|++..++.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7899999999653 23 599999999976 4579999999999 9999999999877432
Q ss_pred ----------CCeEEEEEEEccCCccCCCCcceEEEEEechhhhccc
Q 008950 487 ----------HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNG 523 (548)
Q Consensus 487 ----------~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~ 523 (548)
...|.++|||.|. ++.|++||.++++|+.+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~---~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK---FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc---cCCCCcceEEEEEhhhccccc
Confidence 2378999999985 788999999999999987654
No 206
>PLN02270 phospholipase D alpha
Probab=99.13 E-value=6.3e-10 Score=120.59 Aligned_cols=128 Identities=22% Similarity=0.375 Sum_probs=104.3
Q ss_pred ceEEEEEEEEecCccccC------------------CCCCCCcEEEEEEcCcccceeeeeeecCC-CCCeeeceEEEEEe
Q 008950 263 VGILHVKVVRASKLLKKD------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKN-LNPEWNENFKLVVK 323 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d------------------~~g~~dpyv~v~l~~~~~~~~~T~v~~~t-~nP~Wne~f~f~v~ 323 (548)
.|.|.|+|.+|++|+..+ ..+.+||||.+.+++.++ .||+++.+. .||.|||+|.+.+.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEeec
Confidence 599999999999998631 125689999999998775 799999874 69999999999997
Q ss_pred cCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecccC
Q 008950 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (548)
Q Consensus 324 ~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 398 (548)
... ..+.|.|.|.|.++. .+||.+.+|..++..++..+.|+++.... .+..+....|+++++|.|...+
T Consensus 85 h~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 85 HMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred cCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccC
Confidence 754 689999999998875 59999999999999998888888886431 1112233599999999998765
No 207
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.13 E-value=6.3e-10 Score=91.46 Aligned_cols=97 Identities=30% Similarity=0.527 Sum_probs=82.1
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC-eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK 506 (548)
Q Consensus 431 L~V~v~~a~~L~~---~~~~dpyv~v~l~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d 506 (548)
+.|.|++|++|+. .+..||||++.+.+ ...+|+++.++.||.||+.|.|.+... ....+.++|+++.. ...+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~---~~~~ 76 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR---FSKD 76 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCC---CCCC
Confidence 4689999999975 34799999999998 778999999999999999999999873 34689999999875 4568
Q ss_pred cceEEEEEechhhh-ccceeceEEEe
Q 008950 507 ESLGHVEINLTDVV-HNGRINEKYHL 531 (548)
Q Consensus 507 ~~lG~~~i~L~~l~-~~~~~~~w~~L 531 (548)
.++|++.+++.++. .......|++|
T Consensus 77 ~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 77 DFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ceeEEEEEeHHHhhhcCCcCcceecC
Confidence 99999999999998 55555678764
No 208
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.10 E-value=4e-10 Score=91.52 Aligned_cols=85 Identities=22% Similarity=0.422 Sum_probs=73.3
Q ss_pred HHHHHhhch-hHH-HHHHHHHHHHHHhhHhh-ccCcceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEeeeeeEeC
Q 008950 78 NRFLSDMWP-YLD-KAICANVRTTAQPIFDE-YSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG 153 (548)
Q Consensus 78 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~-~~p~~~l~~~~~~~~~lG~~~P~i~~v~~~~~-~~~~~~ld~~~~~~~ 153 (548)
|.+++|++- +++ +.+.+.+++.++..|++ .+|+| +++|++++++||+.||.|+++++.+. .++++.+|+++.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 667777755 444 78899999999999998 57998 99999999999999999999999864 445699999999999
Q ss_pred CCcEEEEEEE
Q 008950 154 NPNIVLVLKL 163 (548)
Q Consensus 154 ~~~i~l~~~~ 163 (548)
+..+.+++++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999988765
No 209
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.08 E-value=1.2e-09 Score=90.18 Aligned_cols=90 Identities=34% Similarity=0.672 Sum_probs=77.4
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCe---EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGD---KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dpyv~v~l~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 504 (548)
+.+.|++|++|... +..+|||++++.+. .++|+++.++.||.|||.|.|.+.... ...|.++||+++. .+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~---~~ 77 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDR---FG 77 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCC---cc
Confidence 67899999999874 36899999999875 689999999999999999999998753 6789999999985 45
Q ss_pred CCcceEEEEEechhhhccce
Q 008950 505 SKESLGHVEINLTDVVHNGR 524 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~~~~ 524 (548)
.+..+|.+.+++.++..+..
T Consensus 78 ~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 78 RDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred CCceeEEEEEEHHHcccCcc
Confidence 68999999999999876543
No 210
>PLN02952 phosphoinositide phospholipase C
Probab=99.06 E-value=2.4e-09 Score=114.01 Aligned_cols=104 Identities=28% Similarity=0.390 Sum_probs=84.3
Q ss_pred ceEEEEEEEEecCcccc------CCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEE
Q 008950 263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~------d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v 334 (548)
...|.|+|++|.+++.. +.....||||++.+-+-. ..+++|+++.++.||+|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 112345999999996532 2346899999999999999999999887777899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~ 369 (548)
||+|..+.|+++|++.+|+..|..|-. +++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence 999988889999999999999998852 55653
No 211
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.05 E-value=5.4e-11 Score=123.70 Aligned_cols=134 Identities=28% Similarity=0.509 Sum_probs=104.4
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc-------------------------ccc---eeeeeeecCC
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-------------------------KLP---WKKTTVKKKN 309 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~-------------------------~~~---~~~T~v~~~t 309 (548)
..+.|.-.+.|.+.+|+||.++|.+|.||||+.+.+.+. ..+ .+-|+++++|
T Consensus 108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T 187 (1103)
T KOG1328|consen 108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT 187 (1103)
T ss_pred CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence 355666778888999999999999999999999887211 011 1458899999
Q ss_pred CCCeeeceEEEEEecCCCCEEEEEEEEcCCC---------------------------------C---CCCeeEEEEEEC
Q 008950 310 LNPEWNENFKLVVKEPESQILQLQVFDWDKV---------------------------------G---GHDRLGMQLVPL 353 (548)
Q Consensus 310 ~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~---------------------------------~---~dd~lG~~~i~l 353 (548)
+||+|+|.|.|.+.+..++.+.+.+||+|.- + .|||+|++.||+
T Consensus 188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl 267 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL 267 (1103)
T ss_pred CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence 9999999999999999999999999998842 1 389999999999
Q ss_pred cccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEeccc
Q 008950 354 KLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (548)
Q Consensus 354 ~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 397 (548)
+++... +-+.|+.|..+ +...+.+|.+++.+......+
T Consensus 268 ~EiP~~-Gld~WFkLepR-----S~~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 268 AEIPPD-GLDQWFKLEPR-----SDKSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred hcCCcc-hHHHHhccCcc-----cccccccceEEEEEEEeeecc
Confidence 999865 23344444332 224678999999998766544
No 212
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.99 E-value=1.4e-09 Score=113.69 Aligned_cols=112 Identities=18% Similarity=0.282 Sum_probs=98.6
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeE-EEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCC
Q 008950 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWS 505 (548)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dpyv~v~l~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 505 (548)
-|.|.|-+|+||+.. |..||||.|.+.... .+|.++.+++.|-|.|.|.|.++. .-..|.+-|||+| +++
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~--~F~~l~fYv~D~d----~~~ 79 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR--TFRYLSFYVWDRD----LKR 79 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc--ceeeEEEEEeccc----ccc
Confidence 478999999999974 689999999998866 599999999999999999999876 3468999999998 689
Q ss_pred CcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEEe
Q 008950 506 KESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRWKM 547 (548)
Q Consensus 506 d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~~ 547 (548)
|+.||.+.|.=.++-.....+.||.|.... +|+|++++++.+
T Consensus 80 D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 80 DDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred ccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecc
Confidence 999999999999998777889999997542 899999998764
No 213
>PLN02223 phosphoinositide phospholipase C
Probab=98.94 E-value=1.2e-08 Score=106.58 Aligned_cols=112 Identities=18% Similarity=0.284 Sum_probs=88.3
Q ss_pred CceEEEEEEeeeecCCC--------CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEE
Q 008950 427 GAGLLSVLVQGAEDVEG--------ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (548)
Q Consensus 427 ~~g~L~V~v~~a~~L~~--------~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 493 (548)
....|.|+|++|++++. ...+||||+|.+.| ..++|.+..++.||+|||+|+|.+..++ -..|.|+
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PE-LAlLrf~ 485 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPD-LALISFE 485 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccC-ceEEEEE
Confidence 35679999999998741 13579999999965 3457888888999999999999998863 3579999
Q ss_pred EEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 008950 494 VMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRW 545 (548)
Q Consensus 494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~ 545 (548)
|+|++. ...|+++|+..+|++.+..+- +..+|.+.. .-++.++++|
T Consensus 486 V~D~D~---~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 486 VYDYEV---STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEecCC---CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 999985 467899999999999987665 567886542 4566777666
No 214
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.94 E-value=3.4e-09 Score=112.73 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=81.7
Q ss_pred ceEEEEEEEEecCcccc------CCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEE
Q 008950 263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~------d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v 334 (548)
...|.|+|+.+.+++.. +.....||||+|.+-+-. ..+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 222357999999996522 2346888999999999999999999988888999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCC
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPHE 360 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~~ 360 (548)
+|+|..++|+|+|+..+|+..|..|-
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy 573 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI 573 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc
Confidence 99998889999999999999999884
No 215
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.92 E-value=7.1e-09 Score=110.23 Aligned_cols=98 Identities=29% Similarity=0.509 Sum_probs=82.3
Q ss_pred EEEEEEEEecCccccC----CCCCCCcEEEEEEcCcc--cceeeee-eecCCCCCeeeceEEEEEecCCCCEEEEEEEEc
Q 008950 265 ILHVKVVRASKLLKKD----FLGTSDPYVKLSLTGEK--LPWKKTT-VKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d----~~g~~dpyv~v~l~~~~--~~~~~T~-v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 337 (548)
+|.|+|+++.++...- ....+||||.|++-|-. ....+|+ +..++-||.|+|+|+|.+..|+-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999776542 12458999999986532 1235788 667999999999999999999888999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCce
Q 008950 338 DKVGGHDRLGMQLVPLKLLTPHETK 362 (548)
Q Consensus 338 d~~~~dd~lG~~~i~l~~l~~~~~~ 362 (548)
|..++|||+|+..+|+..|..|-.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999988433
No 216
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.91 E-value=3.7e-09 Score=85.80 Aligned_cols=86 Identities=19% Similarity=0.338 Sum_probs=71.7
Q ss_pred EEEEEEEecCccccC---CCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCC
Q 008950 266 LHVKVVRASKLLKKD---FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (548)
Q Consensus 266 L~V~V~~A~~L~~~d---~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (548)
|.|+|.+|+++...+ +.+.+||||.+++++.. +.||++ +.||.|||+|.|.+. ....+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence 679999999999877 57889999999999764 357765 589999999999994 46799999999863 45
Q ss_pred CCeeEEEEEECcccCCC
Q 008950 343 HDRLGMQLVPLKLLTPH 359 (548)
Q Consensus 343 dd~lG~~~i~l~~l~~~ 359 (548)
.-.+|..-+.++++...
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 56899999999888754
No 217
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.88 E-value=9.6e-09 Score=109.17 Aligned_cols=98 Identities=24% Similarity=0.370 Sum_probs=80.7
Q ss_pred ceEEEEEEEEecCcc----cc--CCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEE
Q 008950 263 VGILHVKVVRASKLL----KK--DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~----~~--d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v 334 (548)
...|.|+|+.+.+++ .. +.....||||+|.+.+-. ..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999998753 11 122457999999996432 2346899999989999999999999888778899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCC
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPHE 360 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~~ 360 (548)
+|+|..+.|+++|++.+|+..|..|-
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy 556 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI 556 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc
Confidence 99998888999999999999999874
No 218
>PLN02228 Phosphoinositide phospholipase C
Probab=98.88 E-value=2.4e-08 Score=105.87 Aligned_cols=124 Identities=22% Similarity=0.312 Sum_probs=92.8
Q ss_pred eEEEEEEEEecCccc---c---CCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCee-eceEEEEEecCCCCEEEEEE
Q 008950 264 GILHVKVVRASKLLK---K---DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQV 334 (548)
Q Consensus 264 g~L~V~V~~A~~L~~---~---d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~v 334 (548)
..|+|+|++|.+|+. . +.....||||++.+.+-. ..+++|++++++.||.| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 112347999999996532 23468999988899999 99999999888778899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (548)
Q Consensus 335 ~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 395 (548)
+|+|..+.|+++|++.+|+..|..|-. .++|.... ...-....|.+++.+.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~-----G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRA-----GKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCC-----CCCCCCeEEEEEEEEcCc
Confidence 999988889999999999999987732 23443210 011234578888877653
No 219
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.84 E-value=1.6e-09 Score=112.92 Aligned_cols=101 Identities=29% Similarity=0.430 Sum_probs=87.8
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc----cceeeeeeecCCCCCeeeceEEEEEecC----CCCE
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQI 329 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~ 329 (548)
.+..+...|.|.|+.|+++.+-|.+|.|||||+|.+++.. ....+|+|+.+|+||+|+|+|+|.|... +...
T Consensus 941 ~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am 1020 (1103)
T KOG1328|consen 941 YYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAM 1020 (1103)
T ss_pred EeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccce
Confidence 3455667899999999999999999999999999999764 2356899999999999999999999632 2567
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCC
Q 008950 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (548)
Q Consensus 330 L~v~v~d~d~~~~dd~lG~~~i~l~~l~~ 358 (548)
+.|+|+|+|-.+.+||-|++.+.|.++..
T Consensus 1021 ~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1021 LHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEEeeccceecccccchHHHHhhCCCCC
Confidence 99999999999999999999999988863
No 220
>PLN02952 phosphoinositide phospholipase C
Probab=98.83 E-value=4.8e-08 Score=104.24 Aligned_cols=100 Identities=25% Similarity=0.288 Sum_probs=81.9
Q ss_pred ceEEEEEEeeeecCCC--C-------CCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEE
Q 008950 428 AGLLSVLVQGAEDVEG--E-------NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~--~-------~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 493 (548)
...|.|+|++|++++. . ..+||||+|.+-| .+++|+++.++.||+|||+|+|.+..+. -..+.|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE-LAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE-LALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC-ccEEEEE
Confidence 5679999999988742 1 1359999999865 4569999999999999999999988763 3579999
Q ss_pred EEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950 494 VMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS 534 (548)
Q Consensus 494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~ 534 (548)
|+|++. ...++++|+..+|++.+..+- +|++|.+.
T Consensus 548 V~D~D~---~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~ 582 (599)
T PLN02952 548 VREYDM---SEKDDFGGQTCLPVSELRPGI---RSVPLHDK 582 (599)
T ss_pred EEecCC---CCCCCeEEEEEcchhHhcCCc---eeEeCcCC
Confidence 999874 567899999999999998765 48899754
No 221
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.75 E-value=1.1e-07 Score=98.59 Aligned_cols=178 Identities=20% Similarity=0.288 Sum_probs=127.1
Q ss_pred eeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCC----CCCCeeEEEEEECcccCCCCceEEEEeccccccCCC
Q 008950 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV----GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376 (548)
Q Consensus 301 ~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~----~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~ 376 (548)
.+|.++.+.+||.|.+.|.+.......|.++++++|.+.. ...+|+|++...+.++.........+.+..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~------ 116 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP------ 116 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc------
Confidence 4899999999999999998888776789999999998743 467899999999998886533322222211
Q ss_pred CCCCccccEEEEEEEEEecccCcccccccccccccCCCCCCCCCcccccCCceEEEEEEeeeecCCCC---CCCCcEEEE
Q 008950 377 PKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAII 453 (548)
Q Consensus 377 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dpyv~v 453 (548)
.....+|.|.+...-... ......-..+|++|..+ +.+|||..+
T Consensus 117 -~~~~~~g~iti~aee~~~--------------------------------~~~~~~~~~~~~~ld~kd~f~ksd~~l~~ 163 (529)
T KOG1327|consen 117 -GKNAGSGTITISAEEDES--------------------------------DNDVVQFSFRAKNLDPKDFFSKSDPYLEF 163 (529)
T ss_pred -CccCCcccEEEEeecccc--------------------------------cCceeeeeeeeeecCcccccccCCcceEE
Confidence 123456777777621110 11122223557888764 579999998
Q ss_pred EEc--Ce----EEEeeeccCCCCCccCceEEEEccCCCC---CCeEEEEEEEccCCccCCCCcceEEEEEechhhhc
Q 008950 454 LYK--GD----KKRTKMIRKTRDPAWNEEFQFMLDEPPL---HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVH 521 (548)
Q Consensus 454 ~l~--~~----~~kT~v~~~t~nP~wne~f~f~v~~~~~---~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~ 521 (548)
+-. .. .++|.++++++||.|.+ |.......+. +..+.++++|.+. .++++++|++..++.++..
T Consensus 164 ~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~---~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 164 YKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDS---NGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred EEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCC---CCCcCceeEecccHHHhcc
Confidence 753 22 24999999999999988 5555554433 3478899999986 4677999999999998864
No 222
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.71 E-value=1.8e-07 Score=99.53 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=86.8
Q ss_pred ceEEEEEEeeeecCC----C-----CCCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEE
Q 008950 428 AGLLSVLVQGAEDVE----G-----ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~----~-----~~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 493 (548)
...|.|+|+.+++++ . ....||||+|.+-| .+++|+++.++.||+|||+|+|.+..+. -..+.|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe-LAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE-LALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc-eeEEEEE
Confidence 467999999998742 1 12579999999954 3469999999999999999999988763 3589999
Q ss_pred EEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 008950 494 VMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRW 545 (548)
Q Consensus 494 V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~ 545 (548)
|+|++. ...|+++|+..+|++.|..+- +..+|.+.. ...+.+.++|
T Consensus 530 V~d~D~---~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYDM---SEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEECCC---CCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCCeeEEEEEEe
Confidence 999874 467899999999999987765 356776542 4566676665
No 223
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.70 E-value=5.7e-08 Score=102.74 Aligned_cols=126 Identities=25% Similarity=0.382 Sum_probs=94.9
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEEcCccc---ceeeeeeecCCCCCeee-ceEEEEEecCCCCEEEEEEEEcCC
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWN-ENFKLVVKEPESQILQLQVFDWDK 339 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~---~~~~T~v~~~t~nP~Wn-e~f~f~v~~~~~~~L~v~v~d~d~ 339 (548)
-.|.|.|+.||.|+... .|...|||+|.+.|... ..++|.|..|++||+|| |+|+|.+.+|+-..|+|.|||.|-
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 46889999999999553 35567999999976432 23566777899999999 999999999998999999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEEecccC
Q 008950 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (548)
Q Consensus 340 ~~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 398 (548)
++...|||++.+|+..+..|- ...+|... -.+.-.-..|.+.+...|..+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~-----ySEdlELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNG-----YSEDLELASLLVFIEMRPVLES 1194 (1267)
T ss_pred cCCcceeeeeecchhhhhccc---eeeecccC-----chhhhhhhhheeeeEeccccCc
Confidence 988889999999999998762 12233111 0112234567777777776544
No 224
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.70 E-value=1.7e-07 Score=99.88 Aligned_cols=112 Identities=19% Similarity=0.215 Sum_probs=87.6
Q ss_pred CceEEEEEEeeeecCCC--C-------CCCCcEEEEEEcC-----eEEEeeeccCCCCCccCceEEEEccCCCCCCeEEE
Q 008950 427 GAGLLSVLVQGAEDVEG--E-------NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHI 492 (548)
Q Consensus 427 ~~g~L~V~v~~a~~L~~--~-------~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v 492 (548)
....|.|+|+.+++++. . ..+||||+|.+-| .+++|++..++.||+|||+|+|.+..++ -..|.|
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE-LAllRf 545 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE-LALLRV 545 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc-eeEEEE
Confidence 34679999999998642 1 2479999999954 2358999889999999999999998763 358999
Q ss_pred EEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 008950 493 EVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRW 545 (548)
Q Consensus 493 ~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~ 545 (548)
+|+|++. ...|+++|+..||+..|..+- +..+|.+.. .-.+.++++|
T Consensus 546 ~V~d~d~---~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 546 EVHEHDI---NEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEECCC---CCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999885 468999999999999997765 356776543 4466666665
No 225
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.69 E-value=9.7e-08 Score=77.61 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=68.3
Q ss_pred EEEEEeeeecCCC------CCCCCcEEEEEEcCe-EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccC
Q 008950 431 LSVLVQGAEDVEG------ENHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRF 503 (548)
Q Consensus 431 L~V~v~~a~~L~~------~~~~dpyv~v~l~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 503 (548)
|.++|++|+|+.. .+.+||||.+++++. +.+|++ +.||.|||.|+|.+.. ...+.+.|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk~~---- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDKGG---- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeCCC----
Confidence 5789999999964 357899999999987 568887 5999999999999943 4679999999864
Q ss_pred CCCcceEEEEEechhhhcc
Q 008950 504 WSKESLGHVEINLTDVVHN 522 (548)
Q Consensus 504 ~~d~~lG~~~i~L~~l~~~ 522 (548)
...-.+|-.-+.++++.+.
T Consensus 71 ~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 71 DQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred CeecceeeehhhHHHHHHH
Confidence 3456899999999999763
No 226
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.64 E-value=4.7e-08 Score=107.10 Aligned_cols=104 Identities=26% Similarity=0.360 Sum_probs=84.0
Q ss_pred ceEEEEEEeeeecCC---CCCCCCcEEEEEEcCe-----EEEeeeccCCCCCccCceEEEEccCCC--CCCeEEEEEEEc
Q 008950 428 AGLLSVLVQGAEDVE---GENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSK 497 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~---~~~~~dpyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~ 497 (548)
.|.|.|.|+-|++|+ ....+||||+.++... ++||+++++|.||.|||...+.--... ....|.+.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 478999999999984 3457999999999653 359999999999999999888622211 235899999998
Q ss_pred cCCccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950 498 RTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS 534 (548)
Q Consensus 498 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~ 534 (548)
.. ...+.++|.+.|+|.++.......+||+|...
T Consensus 1603 ~~---~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GG---LLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred cc---eeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 75 67789999999999998766655699999754
No 227
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.64 E-value=9.1e-08 Score=97.72 Aligned_cols=118 Identities=28% Similarity=0.404 Sum_probs=95.3
Q ss_pred eEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcccceeeeeeecCCCCCeee-ceEEEEEecC--CCCEEEEEEEEcCC
Q 008950 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN-ENFKLVVKEP--ESQILQLQVFDWDK 339 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wn-e~f~f~v~~~--~~~~L~v~v~d~d~ 339 (548)
|.|.|+|..||+|+-+|.. ...|.||++.+++.. ++|.+..+++||.|| +.|.|.|.+. ....|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t---~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTT---FKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccc---eehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7789999999999999854 567999999999766 589999999999999 7899999753 46789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCC----------ceEEEEeccccccCCCCCCCccccEEEEEEE
Q 008950 340 VGGHDRLGMQLVPLKLLTPHE----------TKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (548)
Q Consensus 340 ~~~dd~lG~~~i~l~~l~~~~----------~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (548)
.+.+|-||.+.|++..|.-.+ ...-|+++...+ ...+|+|.+-+.
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivk 134 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVK 134 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEE
Confidence 999999999999999876322 123577765432 346788776654
No 228
>PLN02352 phospholipase D epsilon
Probab=98.62 E-value=2.9e-07 Score=100.02 Aligned_cols=122 Identities=16% Similarity=0.241 Sum_probs=92.9
Q ss_pred CCceEEEEEEEEecCcccc----CC-CCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEE
Q 008950 261 KPVGILHVKVVRASKLLKK----DF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (548)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~----d~-~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~ 335 (548)
.-.|.|.++|.+|+-+... +. ....||||.+.+++.++ .|| .+..||.|||+|.+.+.......+.|.|.
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk 81 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLK 81 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence 4569999999999843221 11 11239999999998765 577 56679999999999998765457999998
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCc-eEEEEeccccccCCCCCCCccc-cEEEEEEEEEecccC
Q 008950 336 DWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLKHTNISDPKDMKQR-GKIVVELTYVPFKED 398 (548)
Q Consensus 336 d~d~~~~dd~lG~~~i~l~~l~~~~~-~~~~l~l~~~~~~~~~~~~~~~-G~l~l~l~~~p~~~~ 398 (548)
| ...+||.+.+|..++..++. .+.|+++.... ++... ..|+++++|.|...+
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN------GKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC------CCCCCCCEEEEEEEEEEhhhC
Confidence 8 25799999999999998865 78888885431 11223 599999999998765
No 229
>PLN02352 phospholipase D epsilon
Probab=98.60 E-value=3.9e-07 Score=99.04 Aligned_cols=109 Identities=24% Similarity=0.356 Sum_probs=88.0
Q ss_pred ceEEEEEEeeeecCCCC--------CCCCcEEEEEEcCeEE-EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEcc
Q 008950 428 AGLLSVLVQGAEDVEGE--------NHNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKR 498 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~--------~~~dpyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~ 498 (548)
-|.|.++|.+|+-+... ...||||.|.+++.+. +| .+..||+|||+|..+|... .+..+.+.|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~~- 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKTK- 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEecC-
Confidence 48899999999743211 1239999999998775 88 5667999999999999875 334699999883
Q ss_pred CCccCCCCcceEEEEEechhhhccce-eceEEEeCCCC-----CeEEEEEEEEEeC
Q 008950 499 TGIRFWSKESLGHVEINLTDVVHNGR-INEKYHLINSK-----RGVIHVDIRWKMI 548 (548)
Q Consensus 499 ~~~~~~~d~~lG~~~i~L~~l~~~~~-~~~w~~L~~~~-----~G~i~l~~~~~~~ 548 (548)
..+||.+.||..+++.++. +++||++.+.. ..+|+++++|+|+
T Consensus 84 -------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 84 -------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred -------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 2799999999999999865 89999998752 3599999999985
No 230
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.58 E-value=1.9e-07 Score=95.41 Aligned_cols=114 Identities=22% Similarity=0.477 Sum_probs=94.8
Q ss_pred ceEEEEEEeeeecCCCC----CCCCcEEEEEEcCeEEEeeeccCCCCCccC-ceEEEEccCCCC-CCeEEEEEEEccCCc
Q 008950 428 AGLLSVLVQGAEDVEGE----NHNNPYAIILYKGDKKRTKMIRKTRDPAWN-EEFQFMLDEPPL-HEKIHIEVMSKRTGI 501 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~----~~~dpyv~v~l~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~-~~~l~v~V~d~~~~~ 501 (548)
.|.+.|.|..||+||-. ...|.||++++.+.++||.+..+++||.|| +=|.|.+.+... ++.|.+.++|++.
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-- 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-- 79 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc--
Confidence 37788999999999863 468999999999999999999999999999 469999987654 3589999999996
Q ss_pred cCCCCcceEEEEEechhhhcc----------ceeceEEEeCCC---CCeEEEEEEE
Q 008950 502 RFWSKESLGHVEINLTDVVHN----------GRINEKYHLINS---KRGVIHVDIR 544 (548)
Q Consensus 502 ~~~~d~~lG~~~i~L~~l~~~----------~~~~~w~~L~~~---~~G~i~l~~~ 544 (548)
.+.++.||++.|+++.+.-. ..+..||++.+. =+|+|.+-++
T Consensus 80 -ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 80 -YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred -cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 56789999999999887532 246799999775 2788877654
No 231
>PLN02228 Phosphoinositide phospholipase C
Probab=98.55 E-value=8.5e-07 Score=94.26 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=87.7
Q ss_pred ceEEEEEEeeeecCCC----C-----CCCCcEEEEEEcC-----eEEEeeeccCCCCCcc-CceEEEEccCCCCCCeEEE
Q 008950 428 AGLLSVLVQGAEDVEG----E-----NHNNPYAIILYKG-----DKKRTKMIRKTRDPAW-NEEFQFMLDEPPLHEKIHI 492 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~----~-----~~~dpyv~v~l~~-----~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~v 492 (548)
...|.|+|++|++|+. . ...||||+|.+-| .+++|+++.++.||+| ||+|+|.+..+. -..+.+
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE-LA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE-LALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc-eeEEEE
Confidence 4579999999998731 1 2379999999854 3469999988899999 999999998764 358999
Q ss_pred EEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEEe
Q 008950 493 EVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK-----RGVIHVDIRWKM 547 (548)
Q Consensus 493 ~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~~~ 547 (548)
.|+|++. .+.|+++|+..+|++.|..+- +..+|.+.. ...+.+.+.+.+
T Consensus 509 ~V~D~d~---~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 509 KVQDYDN---DTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEeCCC---CCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9999874 567899999999999997654 356776542 456777776643
No 232
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.54 E-value=3.3e-07 Score=99.55 Aligned_cols=90 Identities=21% Similarity=0.340 Sum_probs=77.9
Q ss_pred CCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEE--EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCC
Q 008950 426 SGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKK--RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG 500 (548)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~---~~~~dpyv~v~l~~~~~--kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~ 500 (548)
+..-..+|++.+|-+|.. ++..|||+.+.++++.. +..-+.+|.||+|++.|++.+..+ .+..+.++|+|+|.
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp-~ek~l~v~vyd~D~- 687 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLP-FEKDLIVEVYDHDL- 687 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccc-hhhcceeEEEEeec-
Confidence 345678899999999975 57899999999999874 777889999999999999998876 66789999999996
Q ss_pred ccCCCCcceEEEEEechhh
Q 008950 501 IRFWSKESLGHVEINLTDV 519 (548)
Q Consensus 501 ~~~~~d~~lG~~~i~L~~l 519 (548)
.+.|+.+|+.+++|++-
T Consensus 688 --~~~d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 688 --EAQDEKIGETTIDLENR 704 (1105)
T ss_pred --ccccchhhceehhhhhc
Confidence 67899999999999764
No 233
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.48 E-value=1.2e-06 Score=93.57 Aligned_cols=111 Identities=20% Similarity=0.341 Sum_probs=88.0
Q ss_pred EEEEEEeeeecCCCC-------CCCCcEEEEEEcCe-----EEEee-eccCCCCCccCceEEEEccCCCCCCeEEEEEEE
Q 008950 430 LLSVLVQGAEDVEGE-------NHNNPYAIILYKGD-----KKRTK-MIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS 496 (548)
Q Consensus 430 ~L~V~v~~a~~L~~~-------~~~dpyv~v~l~~~-----~~kT~-v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d 496 (548)
.|.|.|+++++++.. ...||||.|.+-|- ..+|+ +..++-||.|+|+|+|.+..|.. .-|.+.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL-AliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL-ALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce-eEEEEEEEe
Confidence 899999999976531 35899999998663 35999 55579999999999999998744 589999999
Q ss_pred ccCCccCCCCcceEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEEEe
Q 008950 497 KRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS-----KRGVIHVDIRWKM 547 (548)
Q Consensus 497 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~~ 547 (548)
++. .+.|+++|+..+|++.|..+-+ -.+|.+. ..-.|.+.++|..
T Consensus 696 ~d~---~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 696 YDY---IGKDDFIGQTTLPVSELRQGYR---HVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred cCC---CCcccccceeeccHHHhhCcee---eeeecCCCCccccceeEEEEEEEec
Confidence 985 5779999999999999976553 4666553 2567777777754
No 234
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.42 E-value=5.6e-07 Score=75.40 Aligned_cols=101 Identities=23% Similarity=0.316 Sum_probs=76.4
Q ss_pred EEEEEeeeecCCC----------------CCCCCcEEEEEE----cCeEEEeeeccCCCCCccCceEEEEccC-------
Q 008950 431 LSVLVQGAEDVEG----------------ENHNNPYAIILY----KGDKKRTKMIRKTRDPAWNEEFQFMLDE------- 483 (548)
Q Consensus 431 L~V~v~~a~~L~~----------------~~~~dpyv~v~l----~~~~~kT~v~~~t~nP~wne~f~f~v~~------- 483 (548)
|.|.|++|.+|.. .=..|+||++.+ .++.++|+++.++..|.|+.+++|+|.-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4577888877742 014689999996 3456799999999999999999999971
Q ss_pred -C------CCCCeEEEEEEEccCCcc-------CCCCcceEEEEEechhhhcc-ceeceEEEe
Q 008950 484 -P------PLHEKIHIEVMSKRTGIR-------FWSKESLGHVEINLTDVVHN-GRINEKYHL 531 (548)
Q Consensus 484 -~------~~~~~l~v~V~d~~~~~~-------~~~d~~lG~~~i~L~~l~~~-~~~~~w~~L 531 (548)
. -....+.++||....... ..+|-.||.+.||+.+|+.+ ..+..||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 012378999999764311 24577999999999999986 467899985
No 235
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.35 E-value=1.8e-06 Score=91.78 Aligned_cols=99 Identities=22% Similarity=0.271 Sum_probs=79.7
Q ss_pred eEEEEEEeeeecCCCC--CCCCcEEEEEEcC------eEEEeeeccCCCCCccC-ceEEEEccCCCCCCeEEEEEEEccC
Q 008950 429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKG------DKKRTKMIRKTRDPAWN-EEFQFMLDEPPLHEKIHIEVMSKRT 499 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~--~~~dpyv~v~l~~------~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~~l~v~V~d~~~ 499 (548)
-.|.|.|+.||.|+.. +...|||+|.+-| +.++|.++.+.+||+|| |.|+|.+.+| .-..|.+.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEecccc
Confidence 4588999999999864 3567999999855 33466677799999999 9999999997 44689999999986
Q ss_pred CccCCCCcceEEEEEechhhhccceeceEEEeCCC
Q 008950 500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLINS 534 (548)
Q Consensus 500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~ 534 (548)
++...+||++..|+..+..+- +..+|.+.
T Consensus 1144 ---fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ 1172 (1267)
T KOG1264|consen 1144 ---FSDPNFLAQATYPVKAIKSGF---RSVPLKNG 1172 (1267)
T ss_pred ---cCCcceeeeeecchhhhhccc---eeeecccC
Confidence 677789999999998876543 35666654
No 236
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.27 E-value=6.5e-07 Score=98.47 Aligned_cols=107 Identities=26% Similarity=0.213 Sum_probs=87.1
Q ss_pred CceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEE---EecCCCCEEEEEEEE
Q 008950 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV---VKEPESQILQLQVFD 336 (548)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~---v~~~~~~~L~v~v~d 336 (548)
..|.|.|-|..|++|+-..-...+||||+.++.+. +..++||++.++|.||+|||...+. ........|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 36899999999999966554567999999999765 3446799999999999999987765 222345789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 008950 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (548)
Q Consensus 337 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~~l~l 368 (548)
.+....+.++|.+.++|.++...+....|+.+
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 99999999999999999998866555556655
No 237
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=2.7e-06 Score=82.17 Aligned_cols=96 Identities=33% Similarity=0.375 Sum_probs=79.7
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEE
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~ 333 (548)
++.....-|.|+++.+..|..+|.+|.+||||..++.+.. .-+++|.+.++|.||.||+.|.|.+.. .....+.+.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 4555667899999999999999999999999999997542 235789999999999999999998853 336789999
Q ss_pred EEEcCCCCCCCeeEEEEEEC
Q 008950 334 VFDWDKVGGHDRLGMQLVPL 353 (548)
Q Consensus 334 v~d~d~~~~dd~lG~~~i~l 353 (548)
|||++..+..+++|-+....
T Consensus 307 vgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred ecccCCCcCccCCCcccccc
Confidence 99999877889998766543
No 238
>PLN02964 phosphatidylserine decarboxylase
Probab=97.83 E-value=2.2e-05 Score=84.98 Aligned_cols=92 Identities=17% Similarity=0.310 Sum_probs=75.4
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEE-EEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEE
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVK-LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~-v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 336 (548)
..+.-.|+..+++++|+ ++ ..|+|.. +++|.+. .||.+.++|+||+||+...|.+........++.|||
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 117 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFE 117 (644)
T ss_pred ecccccCeEEEEeehhh----hc---cCCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEe
Confidence 34566799999999997 33 3588766 4555444 699999999999999999999986666667999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCC
Q 008950 337 WDKVGGHDRLGMQLVPLKLLTPH 359 (548)
Q Consensus 337 ~d~~~~dd~lG~~~i~l~~l~~~ 359 (548)
.+.+++++.+|.|++++.++...
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHH
Confidence 99999999999999988777644
No 239
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.76 E-value=3.4e-05 Score=60.13 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=67.1
Q ss_pred EEEEEEecCccccCCCC-CCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEEEEcCCCCCC
Q 008950 267 HVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVFDWDKVGGH 343 (548)
Q Consensus 267 ~V~V~~A~~L~~~d~~g-~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~d~d~~~~d 343 (548)
-++|+.+++|.-....| .+.-|++--+.-.+-...||+++++..||+|+|+|.|.+.. ..+-.|.|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 57899999987654333 33456664333222223689999999999999999998763 335678889998 45677
Q ss_pred CeeEEEEEECcccCCCC
Q 008950 344 DRLGMQLVPLKLLTPHE 360 (548)
Q Consensus 344 d~lG~~~i~l~~l~~~~ 360 (548)
+.||.|++.++++..++
T Consensus 80 e~iG~~sL~l~s~geeE 96 (103)
T cd08684 80 RTIGECSLSLRTLSTQE 96 (103)
T ss_pred ceeeEEEeecccCCHHH
Confidence 89999999999987653
No 240
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.70 E-value=0.011 Score=59.48 Aligned_cols=239 Identities=17% Similarity=0.231 Sum_probs=150.1
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEe-------cCCCCEEEEEEEEcC
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK-------EPESQILQLQVFDWD 338 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~-------~~~~~~L~v~v~d~d 338 (548)
+.|+|++|+|.+... .-.-.+..++++... .|..+..+..|.||......+. ......|++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578999999998762 346788889998775 6777888999999988777764 224678999999988
Q ss_pred -CCCCCCeeEEEEEECccc---CCC--CceEEEEeccccccCCCCCCCccccEEEEEEEEEecccCccccc--cccccc-
Q 008950 339 -KVGGHDRLGMQLVPLKLL---TPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFS--SVSKKY- 409 (548)
Q Consensus 339 -~~~~dd~lG~~~i~l~~l---~~~--~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~--~~~~~~- 409 (548)
..++.+.+|.+.++|+.. ..+ ..+..|++|....+ +-.+.+-+|.+.+............. ...+..
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~----~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS----KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc----ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 556778999999999998 544 34556777754311 11234567777776665443211100 000000
Q ss_pred ccCC-------CCCCC--------------CCcccccCCceEEEEEEeeeecCCCC---------CCCCcEEEEEEcCeE
Q 008950 410 SRKG-------SGNDQ--------------SSDEEALSGAGLLSVLVQGAEDVEGE---------NHNNPYAIILYKGDK 459 (548)
Q Consensus 410 ~~~~-------~~~~~--------------~~~~~~~~~~g~L~V~v~~a~~L~~~---------~~~dpyv~v~l~~~~ 459 (548)
.+.+ ..+.. -.|.......-.|.|++..|+||..- +...-|....+-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 0000 00000 00111112345688888899887542 124456667777888
Q ss_pred EEeeeccCCCCCccC--ceEEEEccCC--------CCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhcc
Q 008950 460 KRTKMIRKTRDPAWN--EEFQFMLDEP--------PLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHN 522 (548)
Q Consensus 460 ~kT~v~~~t~nP~wn--e~f~f~v~~~--------~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~ 522 (548)
..|...+...+|.|. +...+.++.. .....|.|.++.. +..||.+.+++..++..
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g--------~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG--------NQSLGSTSVPLQPLLPK 296 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC--------CcEEEEEEEEhhhccCC
Confidence 888888888889775 3222555432 1122566666664 36899999999999753
No 241
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.67 E-value=7.3e-05 Score=77.96 Aligned_cols=88 Identities=32% Similarity=0.558 Sum_probs=70.5
Q ss_pred EEEecCccccCCCCCCCcEEEEEEc---CcccceeeeeeecCCCCCeeeceEEEEEecC----CCCEEEEEEEEcCCCCC
Q 008950 270 VVRASKLLKKDFLGTSDPYVKLSLT---GEKLPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQILQLQVFDWDKVGG 342 (548)
Q Consensus 270 V~~A~~L~~~d~~g~~dpyv~v~l~---~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L~v~v~d~d~~~~ 342 (548)
..+|++|.++|..+++|||..++-. +.....++|.+.++++||.|.+ |.+..... ....+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 4568999999999999999988753 2233457999999999999986 34443322 24678899999999999
Q ss_pred CCeeEEEEEECcccCC
Q 008950 343 HDRLGMQLVPLKLLTP 358 (548)
Q Consensus 343 dd~lG~~~i~l~~l~~ 358 (548)
++++|++..++.++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999998875
No 242
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.66 E-value=4.4e-05 Score=59.53 Aligned_cols=91 Identities=12% Similarity=0.196 Sum_probs=66.2
Q ss_pred EEEeeeecCCC--C--CCCCcEEEEEE--cC-eEEEeeeccCCCCCccCceEEEEccCCCCCC-eEEEEEEEccCCccCC
Q 008950 433 VLVQGAEDVEG--E--NHNNPYAIILY--KG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSKRTGIRFW 504 (548)
Q Consensus 433 V~v~~a~~L~~--~--~~~dpyv~v~l--~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~l~v~V~d~~~~~~~~ 504 (548)
+++..|+||.- . .++.-|++--+ .. -..||++.+++.||+|+|+|.|.+......+ .|.+.|+.. +.
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~-----~~ 77 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ-----TP 77 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc-----CC
Confidence 67888999852 1 24555776443 33 2359999999999999999999987643433 788899884 56
Q ss_pred CCcceEEEEEechhhhccceeceEE
Q 008950 505 SKESLGHVEINLTDVVHNGRINEKY 529 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~~~~~~~w~ 529 (548)
+++.||.+.++|+++-..+ ..+|-
T Consensus 78 RKe~iG~~sL~l~s~geeE-~~HW~ 101 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQE-TDHWL 101 (103)
T ss_pred ccceeeEEEeecccCCHHH-hhhhh
Confidence 7899999999999875433 24554
No 243
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.00011 Score=72.58 Aligned_cols=105 Identities=23% Similarity=0.274 Sum_probs=84.3
Q ss_pred CCceEEEEEEeeeecCCCC----CCCCcEEEEEEcCe-----EEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEE
Q 008950 426 SGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS 496 (548)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~~----~~~dpyv~v~l~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d 496 (548)
...|.+.|.|++|++|..+ ..++|||+|++... +.+|+...+|.+|-|-+...|.-.. ....|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp--~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP--PGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC--CccEEEEEEec
Confidence 3578899999999999642 37899999998543 3499999999999888877776544 35689999998
Q ss_pred ccCCccCCCCcceEEEEEechhhhccc-eeceEEEeCCC
Q 008950 497 KRTGIRFWSKESLGHVEINLTDVVHNG-RINEKYHLINS 534 (548)
Q Consensus 497 ~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~~~w~~L~~~ 534 (548)
.-.+ +..+.++|.+++-+.++-... ....||+|-++
T Consensus 344 dygR--md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 344 DYGR--MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cccc--cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 7654 678899999999999995544 66799999765
No 244
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.52 E-value=0.00012 Score=72.88 Aligned_cols=117 Identities=19% Similarity=0.258 Sum_probs=92.7
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEE---cC--eEEEeeeccCCCCCccCceEEEEccCCCC-C---------Ce
Q 008950 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILY---KG--DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-H---------EK 489 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~---~~~~dpyv~v~l---~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~---------~~ 489 (548)
...|++.|.++++++. ....|.|+++.+ ++ ++.+|.+++.|.+|.|+|.|...+...+. + .-
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 4457777888887764 336788999886 22 33499999999999999999999876322 1 15
Q ss_pred EEEEEEEccCCccCCCCcceEEEEEechhhhccceeceEEEeCCCC---CeEEEEEEEEE
Q 008950 490 IHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSK---RGVIHVDIRWK 546 (548)
Q Consensus 490 l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~---~G~i~l~~~~~ 546 (548)
+.|+++.+... +.+|.++|.+++.|.-|.....+...++|.+.. +|++.++++.|
T Consensus 446 ~kfeifhkggf--~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 446 KKFEIFHKGGF--NRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred eeEEEeecccc--ccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 78999998864 788999999999999887777788899998764 89999988865
No 245
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.34 E-value=0.00038 Score=58.69 Aligned_cols=93 Identities=28% Similarity=0.389 Sum_probs=68.7
Q ss_pred EEEEEEEecCccccCC---------C----CCCCcEEEEEEc--CcccceeeeeeecCCCCCeeeceEEEEEe-------
Q 008950 266 LHVKVVRASKLLKKDF---------L----GTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVK------- 323 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~---------~----g~~dpyv~v~l~--~~~~~~~~T~v~~~t~nP~Wne~f~f~v~------- 323 (548)
|.|.|++|.+|+.... . -.-++||++.+. ++. +.++|+++.++.-|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~-e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK-ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC-ceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 4688899999975321 0 124799999864 332 3468999999999999999999875
Q ss_pred -c-------CCCCEEEEEEEEcCCC----------CCCCeeEEEEEECcccCCC
Q 008950 324 -E-------PESQILQLQVFDWDKV----------GGHDRLGMQLVPLKLLTPH 359 (548)
Q Consensus 324 -~-------~~~~~L~v~v~d~d~~----------~~dd~lG~~~i~l~~l~~~ 359 (548)
+ .+...+.++||+.+.. .+|-.||.+.||+.+|...
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 1 1356899999997632 2455899999999998754
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=97.27 E-value=0.00045 Score=75.09 Aligned_cols=90 Identities=21% Similarity=0.365 Sum_probs=74.4
Q ss_pred CCceEEEEEEeeeecCCCCCCCCcEEE-EEEcCeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCC
Q 008950 426 SGAGLLSVLVQGAEDVEGENHNNPYAI-ILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~~~~~dpyv~-v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 504 (548)
.-.|+..+++.+|+ + +..|+|.. +++|.+.+||...++|.||+||+...|.+..... ...++.|||.+. ++
T Consensus 51 ~~~~~~~~~~~~~~-~---~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~s 122 (644)
T PLN02964 51 DFSGIALLTLVGAE-M---KFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGP-HLARISVFETNR---LS 122 (644)
T ss_pred cccCeEEEEeehhh-h---ccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCc-ceEEEEEEecCC---CC
Confidence 35799999999997 3 33588665 5678888999999999999999999999877533 457999999985 78
Q ss_pred CCcceEEEEEechhhhccc
Q 008950 505 SKESLGHVEINLTDVVHNG 523 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l~~~~ 523 (548)
.++.+|.++++|.++...+
T Consensus 123 ~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred HHHhhhheeecHhhccHHH
Confidence 9999999999998887653
No 247
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=97.25 E-value=0.0016 Score=68.66 Aligned_cols=225 Identities=17% Similarity=0.269 Sum_probs=141.6
Q ss_pred CCCCceeCCCC-------cchHHHHHHHHhhchhH--H----HHHHHHHHHHHHhhHhhc-cCcceeeeEEEeEeeCCCC
Q 008950 61 EIPLWVKNPDY-------ERVDWLNRFLSDMWPYL--D----KAICANVRTTAQPIFDEY-SGKFKIESIEFENLTLGTL 126 (548)
Q Consensus 61 ~~p~w~~~~d~-------E~~~WlN~~l~~~Wp~~--~----~~~~~~i~~~~~~~l~~~-~p~~~l~~~~~~~~~lG~~ 126 (548)
+.|.|+..-.. -.|-.+|.++..+.... . .++-+.+...+..++... .... ++.+++.++-+|.+
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~L-L~~~~i~elElg~~ 159 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRL-LQEIRIRELELGTK 159 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh-hcccceehhhhccc
Confidence 68888876432 35666777777666521 1 222233333333333332 3444 78999999999999
Q ss_pred CCeEeeEEEEecC------------C-------------CeEEEeeeeeEeCCCcEEEEEEE-eeeEEEEEEEEEEEEEE
Q 008950 127 PPTIYGIRVYETN------------E-------------NQLVMEPALRWAGNPNIVLVLKL-LSFRITVQLVDLQIFAA 180 (548)
Q Consensus 127 ~P~i~~v~~~~~~------------~-------------~~~~ld~~~~~~~~~~i~l~~~~-~~~~~~v~v~~~~~~g~ 180 (548)
-|.+++.+++.-+ + ..+.+=++++|.|+.--++.+.. .+.+..+.|+-.+++|.
T Consensus 160 f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm 239 (1051)
T KOG3532|consen 160 FMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGM 239 (1051)
T ss_pred cccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccc
Confidence 9999999998621 0 12344568889887765555543 22233334445699999
Q ss_pred EEEEEecCCCCCCceeEEEEEcCCCceEEEEEEE--ccccccccchhHHHHHHHHHHHhhhcccCCceee--eecc----
Q 008950 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKI--LGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYE--IPIL---- 252 (548)
Q Consensus 181 ~rv~l~pl~~~~P~~~~~~~~f~~~P~id~~~~~--~g~~~~~~P~l~~~i~~~i~~~~~~~~v~P~~~~--~~l~---- 252 (548)
+|+.+. .-...+++++|++.|.+.-+.+. .|-.+- -.+.+.|.+.++..+.....||++-. .|..
T Consensus 240 ~r~~~~-----r~py~hw~~sf~G~P~~e~di~s~~qg~qLQ--~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~ 312 (1051)
T KOG3532|consen 240 VRVILS-----RQPYHHWTFSFVGQPIFETDINSQIQGHQLQ--RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPI 312 (1051)
T ss_pred eeEEEE-----eccceeeeeeeccCchhhhhhHHHHHHHHHH--HHhHHHHHHHHHHHHHhhccCcchhhhccccccCcc
Confidence 999986 33357899999999987554442 211111 11335667777778888899998531 1111
Q ss_pred -ccc----cccccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcC
Q 008950 253 -DAS----SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG 295 (548)
Q Consensus 253 -~~~----~~~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~ 295 (548)
... ....-.+.|.+.|++.++..|... +++..-||.+.+..
T Consensus 313 ~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 313 FQASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred cccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 110 011234679999999999888654 57889999998864
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.00035 Score=69.08 Aligned_cols=109 Identities=25% Similarity=0.339 Sum_probs=84.4
Q ss_pred CCceEEEEEEEEecCccccCCC-CCCCcEEEEEEcCcc--cceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEE-E
Q 008950 261 KPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-D 336 (548)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d 336 (548)
...|.+.|.|++|++|..+.-. ..++|||+|++.+.. ..+.+|+...+|.+|-+.+...|.- .+....|.+.|| |
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEecc
Confidence 3469999999999999876422 368999999996543 4456888889999998887766665 345678999999 5
Q ss_pred cCCCCCCCeeEEEEEECcccCCCC-ceEEEEeccc
Q 008950 337 WDKVGGHDRLGMQLVPLKLLTPHE-TKEFTLDLLK 370 (548)
Q Consensus 337 ~d~~~~dd~lG~~~i~l~~l~~~~-~~~~~l~l~~ 370 (548)
+.++.++.|+|.+.+-+.+|.... ....|+++..
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 666777789999999999998665 5556777653
No 249
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.79 E-value=0.0082 Score=60.51 Aligned_cols=102 Identities=16% Similarity=0.268 Sum_probs=84.1
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCC------CCCeEEEEEEEccCCccCC
Q 008950 431 LSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP------LHEKIHIEVMSKRTGIRFW 504 (548)
Q Consensus 431 L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~------~~~~l~v~V~d~~~~~~~~ 504 (548)
+.|.|.+|++.+......-.+..++++....|..+.++..|.||....+.+.... ....|+++++.-+.. ..
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~--~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS--TG 79 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC--CC
Confidence 5789999999998766778899999999999999999999999998998876421 234789999987732 45
Q ss_pred CCcceEEEEEechhh---hcc--ceeceEEEeCCC
Q 008950 505 SKESLGHVEINLTDV---VHN--GRINEKYHLINS 534 (548)
Q Consensus 505 ~d~~lG~~~i~L~~l---~~~--~~~~~w~~L~~~ 534 (548)
..+.+|.+.++|... ..+ ....+||+|.+.
T Consensus 80 ~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 80 KRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred cceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 679999999999998 443 355789999987
No 250
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.75 E-value=0.033 Score=49.38 Aligned_cols=119 Identities=19% Similarity=0.298 Sum_probs=85.7
Q ss_pred CCceEEEEEEeeeecCCC-----CCCCCc--EEEEEEcCeEEEeeeccCCCCCccCceEEEEccCCC------------C
Q 008950 426 SGAGLLSVLVQGAEDVEG-----ENHNNP--YAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP------------L 486 (548)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~-----~~~~dp--yv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~~------------~ 486 (548)
+....|+++|..++-.-. .+..+. ++-+.++++.++|+.+.-+.+|.|+|.|-|.+.... .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 346789999998874321 123344 444556899999999999999999999999998753 1
Q ss_pred CCeEEEEEEEccCCccCCCCcceEEEEEechhhhcccee--ceEEEeCCC------CCeEEEEEEEEEe
Q 008950 487 HEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRI--NEKYHLINS------KRGVIHVDIRWKM 547 (548)
Q Consensus 487 ~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~--~~w~~L~~~------~~G~i~l~~~~~~ 547 (548)
.+.+++-|.-.+. .+...++|+-.++...++..+.. .-...|.+. +.|-+.++++..|
T Consensus 86 ~~pihivli~~d~---~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 86 SDPIHIVLIRTDP---SGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred CCceEEEEEEecC---CCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 3467888877664 34458999999999999987643 344555443 3688888887665
No 251
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.73 E-value=0.0011 Score=66.16 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=91.6
Q ss_pred cCCceEEEEEEEEecCccccCCCCCCCcEEEEEEc--CcccceeeeeeecCCCCCeeeceEEEEEecC-----------C
Q 008950 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVKEP-----------E 326 (548)
Q Consensus 260 ~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~--~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-----------~ 326 (548)
+.....|.+.|+++.+++...-....|-|+.+.+. .......+|.++++|.+|.|+|.|.+.+..- .
T Consensus 363 dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 363 DLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred ccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 34455677788888877654322335778887763 2222335899999999999999999988641 1
Q ss_pred CCEEEEEEEEcCCC-CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950 327 SQILQLQVFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (548)
Q Consensus 327 ~~~L~v~v~d~d~~-~~dd~lG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 393 (548)
...+.|++|+...+ .+|.++|.+.+.+..|...-.....+++... .....|.|.+.++..
T Consensus 443 r~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIR 503 (523)
T ss_pred hcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEe
Confidence 34689999998764 6788999999999999877666667776432 245678888888765
No 252
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.45 E-value=0.08 Score=47.52 Aligned_cols=89 Identities=25% Similarity=0.267 Sum_probs=60.9
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEE--cCcccc-eeeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEEEc
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 337 (548)
..++|+|+++.++.-.+ .+|-||.+.+ +++... ...|+.+. ..++.|||...|++. + +....|.|.+|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 45789999999987643 4688888755 443321 12344333 367999999999874 2 2367899999997
Q ss_pred CCCC----CCCeeEEEEEECccc
Q 008950 338 DKVG----GHDRLGMQLVPLKLL 356 (548)
Q Consensus 338 d~~~----~dd~lG~~~i~l~~l 356 (548)
.... ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 124699999998763
No 253
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.13 E-value=0.29 Score=43.14 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=80.1
Q ss_pred ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeee-cCCCCCeeeceEEEEEec--------CCCCEEEEE
Q 008950 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK-KKNLNPEWNENFKLVVKE--------PESQILQLQ 333 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~-~~t~nP~Wne~f~f~v~~--------~~~~~L~v~ 333 (548)
.-.+.|+|++..+++.. ...-||+...+.......+|... ..+..-.|||.|.+.+.- .....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 45678899999988862 23345555555433112334333 345557999999987641 124568899
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCC--CceEEEEeccccccCCCCCCCccccEEEEEEEEEeccc
Q 008950 334 VFDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (548)
Q Consensus 334 v~d~d~~~~dd~lG~~~i~l~~l~~~--~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 397 (548)
|+....-++...+|.+.++|+++... ......+++.. .......|++++.+.+..+
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~--------~~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK--------CKKSNATLSISISLSELRE 139 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc--------CCCCCcEEEEEEEEEECcc
Confidence 99885333336999999999999875 45556666532 1356678999998887643
No 254
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.08 E-value=0.033 Score=49.98 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=63.2
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEE--cCeE----EEeeeccCCCCCccCceEEEEc--cCCCCCCeEEEEEEEccCC
Q 008950 429 GLLSVLVQGAEDVEGENHNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFML--DEPPLHEKIHIEVMSKRTG 500 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~~~~dpyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v--~~~~~~~~l~v~V~d~~~~ 500 (548)
..++|+|+++.+++-....|-||++.+ +++. ..|+.+.. .++.|||-.+|++ .+.+.+..|.|.||+....
T Consensus 8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~ 86 (158)
T cd08398 8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR 86 (158)
T ss_pred CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecc
Confidence 468899999999887666788888865 4433 24544443 7899999877755 4555667999999997532
Q ss_pred cc-CCCCcceEEEEEechhh
Q 008950 501 IR-FWSKESLGHVEINLTDV 519 (548)
Q Consensus 501 ~~-~~~d~~lG~~~i~L~~l 519 (548)
.+ -.....+|.++++|-+-
T Consensus 87 ~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 87 KGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cCCCCceEEEEEEEEEEECC
Confidence 00 01235799999999874
No 255
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.97 E-value=0.11 Score=46.06 Aligned_cols=130 Identities=17% Similarity=0.259 Sum_probs=90.5
Q ss_pred cCCceEEEEEEEEecCccccCC--CCCCCcEE--EEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC---------
Q 008950 260 KKPVGILHVKVVRASKLLKKDF--LGTSDPYV--KLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--------- 326 (548)
Q Consensus 260 ~~~~g~L~V~V~~A~~L~~~d~--~g~~dpyv--~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--------- 326 (548)
+...-.|.++|..++-....-. .+..+.-. -+.+++++ ++|+.+..+.+|.|+|.|-|.+....
T Consensus 5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QR---F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ 81 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQR---FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATT 81 (156)
T ss_pred CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCce---EecCCcccccCCCCCCcEEEEecccccccccchhH
Confidence 3445678999998875543211 13444444 44556666 58899999999999999999986432
Q ss_pred ----CCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCce--EEEEeccccccCCCCCCCccccEEEEEEEEEecc
Q 008950 327 ----SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK--EFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (548)
Q Consensus 327 ----~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~--~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 396 (548)
.+.+.+.|...|..+...++|+-.++-+.+...... ....++.... ...+...|-|.++++..|..
T Consensus 82 lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~----~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 82 LLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG----PESKVPVGILDLRLELLPNL 153 (156)
T ss_pred hhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC----CCCccceeEEEEEEEeecCC
Confidence 356788888887776668999999998888766544 5566653321 12245789999999999863
No 256
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.77 E-value=0.017 Score=63.13 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=68.2
Q ss_pred ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcc----cceeeeeeec-CCCCCeeec-eEEEE-EecCCCCEEEEEEE
Q 008950 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKK-KNLNPEWNE-NFKLV-VKEPESQILQLQVF 335 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~-~t~nP~Wne-~f~f~-v~~~~~~~L~v~v~ 335 (548)
.+.+.|+|+++.-|..++ ...||.|.+-+-. .+.++|++.. ++.||+|+| .|.|. |--+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 457889999999998764 4589999985421 1345676654 899999995 56664 33345568999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCC
Q 008950 336 DWDKVGGHDRLGMQLVPLKLLTPHE 360 (548)
Q Consensus 336 d~d~~~~dd~lG~~~i~l~~l~~~~ 360 (548)
+.+ .+++|+-.+|+..+..|-
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccC----CceeeeeccchhcccCcc
Confidence 975 469999999999999873
No 257
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.69 E-value=0.25 Score=43.55 Aligned_cols=116 Identities=17% Similarity=0.241 Sum_probs=78.5
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeE---EEeeecc-CCCCCccCceEEEEccCCC-------CCCeEEEEEEEc
Q 008950 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDK---KRTKMIR-KTRDPAWNEEFQFMLDEPP-------LHEKIHIEVMSK 497 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~---~kT~v~~-~t~nP~wne~f~f~v~~~~-------~~~~l~v~V~d~ 497 (548)
-.+.+++++..+++. ....-||+...++.. .+|.... ....-.|||.|.+.+.-.. ....+.+.|+..
T Consensus 7 f~~~l~i~~l~~~p~-~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~ 85 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEV 85 (143)
T ss_pred EEEEEEEEEeECcCC-CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEe
Confidence 457788999999887 233445555555543 3444333 4555679999999875321 112678888887
Q ss_pred cCCccCCCCcceEEEEEechhhhcc--ceeceEEEeCCC--CCeEEEEEEEEEeC
Q 008950 498 RTGIRFWSKESLGHVEINLTDVVHN--GRINEKYHLINS--KRGVIHVDIRWKMI 548 (548)
Q Consensus 498 ~~~~~~~~d~~lG~~~i~L~~l~~~--~~~~~w~~L~~~--~~G~i~l~~~~~~~ 548 (548)
.. -+....+|.+.|+|++.... ......++|..+ .+..+++++++.++
T Consensus 86 ~~---~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 86 DG---SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSEL 137 (143)
T ss_pred cC---CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEEC
Confidence 32 12236999999999999884 456778999876 36888888888764
No 258
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.66 E-value=0.077 Score=48.53 Aligned_cols=91 Identities=14% Similarity=0.247 Sum_probs=64.5
Q ss_pred eEEEEEEeeeecCCC-CCCCCcEEEEEE--cCeE----EEeeeccCCCCCccCceEEEEc--cCCCCCCeEEEEEEEccC
Q 008950 429 GLLSVLVQGAEDVEG-ENHNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFML--DEPPLHEKIHIEVMSKRT 499 (548)
Q Consensus 429 g~L~V~v~~a~~L~~-~~~~dpyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v--~~~~~~~~l~v~V~d~~~ 499 (548)
..++|+++++.++.. ....+-||++.+ |++. ..|+.+....++.|||.++|.+ .+.+.+..|.|.||+...
T Consensus 8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 458899999999986 446777888644 5543 3666555567899999888855 455667799999998653
Q ss_pred Ccc-------------CCCCcceEEEEEechhh
Q 008950 500 GIR-------------FWSKESLGHVEINLTDV 519 (548)
Q Consensus 500 ~~~-------------~~~d~~lG~~~i~L~~l 519 (548)
... -+.+..||.++++|-+-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 88 KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccCcceEEEEEeEEEEcc
Confidence 100 11257999999999774
No 259
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.37 E-value=0.11 Score=47.57 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=60.0
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEE--cCcccc-eeeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEEEc
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 337 (548)
..++|+|+++.++...+ ...+-||.+.+ |++... ...|+.+..+.++.|||...|++. + |....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 35789999999998622 34667777644 544331 234555554577999999999764 2 3467899999997
Q ss_pred CCCC----------------CCCeeEEEEEECcc
Q 008950 338 DKVG----------------GHDRLGMQLVPLKL 355 (548)
Q Consensus 338 d~~~----------------~dd~lG~~~i~l~~ 355 (548)
.... .+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5422 13477777777655
No 260
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.31 E-value=0.11 Score=46.78 Aligned_cols=93 Identities=25% Similarity=0.299 Sum_probs=60.9
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEE--cCccc-ceeeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEEEc
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKL-PWKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 337 (548)
..++|++.+..+....+ ....+-||.+.+ |++.. ....|.......++.|||...|.+. + +....|.+.+|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35678888888876521 234566777654 44322 1223433333478999999999864 2 3367899999998
Q ss_pred CCCC--CCCeeEEEEEECcccC
Q 008950 338 DKVG--GHDRLGMQLVPLKLLT 357 (548)
Q Consensus 338 d~~~--~dd~lG~~~i~l~~l~ 357 (548)
+..+ .+..||.+.++|-+-.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 7544 4578999999887643
No 261
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=95.07 E-value=0.051 Score=52.68 Aligned_cols=118 Identities=20% Similarity=0.244 Sum_probs=78.9
Q ss_pred cCCceEEEEEEEEecCccccCC--CCCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEc
Q 008950 260 KKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (548)
Q Consensus 260 ~~~~g~L~V~V~~A~~L~~~d~--~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 337 (548)
....|+|.+++.++|+|+-... .-.-+-||++..+.+. ..+|.+.....-=.|.|+|+..+.+ ...+.+-||.|
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW 122 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSW 122 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeeccc--ceeeeEEEeec
Confidence 3457999999999999975432 3346889999988654 3567776666667899999998865 35788999999
Q ss_pred CCCCCCCeeEEEEEECcccCCC-CceEEEEeccccccCCCCCCCccccEEEEEEEEE
Q 008950 338 DKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (548)
Q Consensus 338 d~~~~dd~lG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 393 (548)
+.-.++++.-...+.+..+... ..+.+.+.+ .++|++.+++.+.
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~l------------ePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDRQSPDRVVALYL------------EPRGQPPLRLPLA 167 (442)
T ss_pred CchhhccccccchhhhhhhhhcCCcceeeeec------------ccCCCCceecccC
Confidence 8766666533333444443332 233333332 4677777777554
No 262
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.91 E-value=0.27 Score=39.07 Aligned_cols=86 Identities=27% Similarity=0.381 Sum_probs=60.9
Q ss_pred CCCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCce
Q 008950 283 GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK 362 (548)
Q Consensus 283 g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~ 362 (548)
|.++-.+.+.+++..+ .+|.-+ ...+..|++.|.+.+. .+..|+|.||-+|- ..+-|...+.|++...
T Consensus 7 ~~~eV~avLklDn~~V--gqT~Wk-~~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~~~---- 74 (98)
T cd08687 7 GCSEVSAVLKLDNTVV--GQTQWK-PKSNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDERH---- 74 (98)
T ss_pred cccceEEEEEEcCeEE--eecccc-ccccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhhcc----
Confidence 3468889999987654 466553 3457899999999996 46799999998874 3466777777777322
Q ss_pred EEEEeccccccCCCCCCCccccEEEEEEEE
Q 008950 363 EFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (548)
Q Consensus 363 ~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 392 (548)
...++ -.+.|.+..+++|
T Consensus 75 ~~~~~------------lepqg~l~~ev~f 92 (98)
T cd08687 75 EVQLD------------MEPQLCLVAELTF 92 (98)
T ss_pred cceec------------cccccEEEEEEEe
Confidence 22222 3567888888887
No 263
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.58 E-value=0.072 Score=58.49 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=69.0
Q ss_pred CceEEEEEEeeeecCCCCCCCCcEEEEEEcC-------eEEEeeecc-CCCCCccCc-eEEEEccCCCCCCeEEEEEEEc
Q 008950 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG-------DKKRTKMIR-KTRDPAWNE-EFQFMLDEPPLHEKIHIEVMSK 497 (548)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~~~~dpyv~v~l~~-------~~~kT~v~~-~t~nP~wne-~f~f~v~~~~~~~~l~v~V~d~ 497 (548)
.++.+.|+|++++=|..+ ....||.|.+-| +.++|+++. ++.||+|+| .|.|.---.+.-..|.|.|+++
T Consensus 701 IA~t~sV~VISgqFLSdr-kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDR-KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred EEeeEEEEEEeeeecccc-ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 567799999999888664 456999999865 335888776 699999996 6888644433446899999998
Q ss_pred cCCccCCCCcceEEEEEechhhhccc
Q 008950 498 RTGIRFWSKESLGHVEINLTDVVHNG 523 (548)
Q Consensus 498 ~~~~~~~~d~~lG~~~i~L~~l~~~~ 523 (548)
.. .++|+=.+|++.+-.+-
T Consensus 780 gg-------K~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 780 GG-------KFIGQRILPVDGLNAGY 798 (1189)
T ss_pred CC-------ceeeeeccchhcccCcc
Confidence 64 79999999998876543
No 264
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.30 E-value=0.22 Score=44.77 Aligned_cols=90 Identities=18% Similarity=0.297 Sum_probs=61.4
Q ss_pred eEEEEEEeeeecCCC--CCCCCcEEEEEE--cCeE----EEeeeccCCCCCccCceEEEEc--cCCCCCCeEEEEEEEcc
Q 008950 429 GLLSVLVQGAEDVEG--ENHNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFML--DEPPLHEKIHIEVMSKR 498 (548)
Q Consensus 429 g~L~V~v~~a~~L~~--~~~~dpyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v--~~~~~~~~l~v~V~d~~ 498 (548)
..++|.++++.+... ....+-||++.+ +++. ..|.......++.|||..+|.+ .+.+.+..|.+.||+..
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 356778888877754 334666777754 4432 2444444447899999888874 45566779999999976
Q ss_pred CCccCCCCcceEEEEEechhh
Q 008950 499 TGIRFWSKESLGHVEINLTDV 519 (548)
Q Consensus 499 ~~~~~~~d~~lG~~~i~L~~l 519 (548)
.. +...+..||.++++|-+-
T Consensus 88 ~~-~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EP-GSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cC-CCCcceEEEEEeEEeEcc
Confidence 42 012468999999999874
No 265
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.19 E-value=0.21 Score=45.60 Aligned_cols=93 Identities=23% Similarity=0.252 Sum_probs=62.5
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEE--cCcccce-eeeeeec----CCCCCeeeceEEEEEe--c-CCCCEEEEE
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPW-KKTTVKK----KNLNPEWNENFKLVVK--E-PESQILQLQ 333 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~-~~T~v~~----~t~nP~Wne~f~f~v~--~-~~~~~L~v~ 333 (548)
..+.|+|.++.+++........|-|+.+.+ |++.... ..|+... -...+.|||...|.+. + +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 567899999999988764445788888755 4443311 1333211 1235779999988874 2 336789999
Q ss_pred EEEcCCCC---------CCCeeEEEEEECccc
Q 008950 334 VFDWDKVG---------GHDRLGMQLVPLKLL 356 (548)
Q Consensus 334 v~d~d~~~---------~dd~lG~~~i~l~~l 356 (548)
+|+....+ .+..||.+.++|-+-
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99976543 346889888887653
No 266
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.25 E-value=0.58 Score=42.80 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=45.9
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEE--cCcccceeeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEEEcC
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD 338 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d 338 (548)
.++|+|.++.++. .+......-||++.+ |+......+|+...-+.+|.|||...|.+. + +....|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4678888887432 222222335665533 443332335666666778999999888874 2 23678999999974
No 267
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.15 E-value=0.25 Score=44.48 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=51.4
Q ss_pred CCCcEEEEEE--cCeE----EEeeeccCCCCCccCceEEEEcc--CCCCCCeEEEEEEEccCCccCCCCcceEEEEEech
Q 008950 446 HNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLT 517 (548)
Q Consensus 446 ~~dpyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~ 517 (548)
.+|-||++.+ +++. ..|+.+.-+..+.|||-.+|++. +.+.+..|.|+||+... .+....+|.++++|-
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~---~~~~~~vg~~~~~lF 105 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG---TGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC---CCCceEEEEEEEeeE
Confidence 4677888755 4432 25666666777899997777764 55566799999999764 235679999999998
Q ss_pred hh
Q 008950 518 DV 519 (548)
Q Consensus 518 ~l 519 (548)
+-
T Consensus 106 d~ 107 (159)
T cd08397 106 NK 107 (159)
T ss_pred CC
Confidence 75
No 268
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.00 E-value=0.32 Score=43.75 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=52.0
Q ss_pred CCCCcEEEEEE--cCcccc-eeeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEEEcCCCCCCCeeEEEEEECccc
Q 008950 283 GTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356 (548)
Q Consensus 283 g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l 356 (548)
..+|-||.+.+ ++.... ..+|+.+.-+..+.|||...|++. + +....|.|.|||.+..++...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 35677888765 333221 125555555677899999999875 2 23678999999987655677999999988764
No 269
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.83 E-value=0.6 Score=41.14 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=44.4
Q ss_pred EEcCcccc--eeeeeeecCC-CCCeeeceEEEEEe--c-CCCCEEEEEEEEcCCCCCC----CeeEEEEEECccc
Q 008950 292 SLTGEKLP--WKKTTVKKKN-LNPEWNENFKLVVK--E-PESQILQLQVFDWDKVGGH----DRLGMQLVPLKLL 356 (548)
Q Consensus 292 ~l~~~~~~--~~~T~v~~~t-~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d~~~~d----d~lG~~~i~l~~l 356 (548)
+.|++... ...|+...-+ .++.|||...|.+. + |....|.|.||+.+....+ ..||.+.++|-+.
T Consensus 11 y~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 11 YHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred EECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 33554432 2356655555 79999999999875 2 3467899999998765544 6899999988765
No 270
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.72 E-value=1.6 Score=34.85 Aligned_cols=83 Identities=14% Similarity=0.228 Sum_probs=56.8
Q ss_pred CCcEEEEEEcCeEE-EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhcccee
Q 008950 447 NNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNGRI 525 (548)
Q Consensus 447 ~dpyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~ 525 (548)
.+..+.+.+.+... .|.-. ...+..|++.|.+.+.. ...|.|.|+-+|-+ .+-|-.-+.|.+...
T Consensus 9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdR---sRELEI~VywrD~R------slCav~~lrLEd~~~---- 74 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELER---SRELEIAVYWRDWR------SLCAVKFLKLEDERH---- 74 (98)
T ss_pred cceEEEEEEcCeEEeecccc-ccccccccceeEEEeec---ccEEEEEEEEecch------hhhhheeeEhhhhcc----
Confidence 56677788877554 55443 34678899999998865 46899999988743 566777788887332
Q ss_pred ceEEEeCCCCCeEEEEEEEE
Q 008950 526 NEKYHLINSKRGVIHVDIRW 545 (548)
Q Consensus 526 ~~w~~L~~~~~G~i~l~~~~ 545 (548)
...+.-.++|.+..++.|
T Consensus 75 --~~~~~lepqg~l~~ev~f 92 (98)
T cd08687 75 --EVQLDMEPQLCLVAELTF 92 (98)
T ss_pred --cceeccccccEEEEEEEe
Confidence 233334467887777765
No 271
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.49 E-value=2.3 Score=38.62 Aligned_cols=71 Identities=17% Similarity=0.307 Sum_probs=53.4
Q ss_pred CCCcEEEEEEcCcccceeeeeeec--CCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCC
Q 008950 284 TSDPYVKLSLTGEKLPWKKTTVKK--KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (548)
Q Consensus 284 ~~dpyv~v~l~~~~~~~~~T~v~~--~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~ 358 (548)
+..-|+++.++++.+ .+|+... ....-.+||.|.+.+... -..|.++||.... ..+..|+++.+|+-....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 456799999998765 4555433 333356789999999763 4689999999886 678899999999865543
No 272
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.84 E-value=0.8 Score=41.91 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=57.7
Q ss_pred eEEEEEEeeeecCCCCC--CCCcEEEEEE--cCeE---EEeeeccCCCCCccCceEEEEcc--CCCCCCeEEEEEEEccC
Q 008950 429 GLLSVLVQGAEDVEGEN--HNNPYAIILY--KGDK---KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSKRT 499 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~~--~~dpyv~v~l--~~~~---~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~ 499 (548)
..++++|+++.++.... ...-||++.+ ++.. .+|+...-+.++.|||-.+|.+. +.+.+..|.+.||+...
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 35677888887443322 2345666643 3332 25666666778999997777654 45556799999998632
Q ss_pred Cc----cC---------CCCcceEEEEEechhh
Q 008950 500 GI----RF---------WSKESLGHVEINLTDV 519 (548)
Q Consensus 500 ~~----~~---------~~d~~lG~~~i~L~~l 519 (548)
.. .+ ..+..||.+++.|-+-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcC
Confidence 10 01 1257899999999774
No 273
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=91.57 E-value=2.3 Score=38.61 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=51.8
Q ss_pred CCCcEEEEEEcCeEE-EeeeccC--CCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhh
Q 008950 446 HNNPYAIILYKGDKK-RTKMIRK--TRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVV 520 (548)
Q Consensus 446 ~~dpyv~v~l~~~~~-kT~v~~~--t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~ 520 (548)
...-|+++.++++.. +|+...= ...=.|||.|.+.+...| ++|.++||... ...+..|+.+.+++-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P--esi~l~i~E~~----~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP--ESIKLEIYEKS----GLSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC--CEEEEEEEEcc----CccceEEEEEEeeCCCCc
Confidence 356699999999775 5554332 333458999999998864 68999999986 257899999999986543
No 274
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=90.10 E-value=3.4 Score=38.07 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=41.9
Q ss_pred cceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEEcCCCCC--CCeeEEEEEECc
Q 008950 298 LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGG--HDRLGMQLVPLK 354 (548)
Q Consensus 298 ~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~~--dd~lG~~~i~l~ 354 (548)
...++|.|...+.+|.|+|++.+.+... ....|.|++++.....+ ...+|.+-+||-
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 3346888999999999999999988632 35678888887543211 257888888873
No 275
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.96 E-value=1.2 Score=40.64 Aligned_cols=91 Identities=21% Similarity=0.295 Sum_probs=61.5
Q ss_pred ceEEEEEEeeeecCCCC---CCCCcEEEEEE--cCeE----EEeeecc----CCCCCccCceEEEEcc--CCCCCCeEEE
Q 008950 428 AGLLSVLVQGAEDVEGE---NHNNPYAIILY--KGDK----KRTKMIR----KTRDPAWNEEFQFMLD--EPPLHEKIHI 492 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---~~~dpyv~v~l--~~~~----~kT~v~~----~t~nP~wne~f~f~v~--~~~~~~~l~v 492 (548)
...+.++|.++.+++.. ...|-||++.+ +++. ..|+... -...+.|||-.+|.+. +.+.+..|.+
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 45688999999999863 24778888755 4443 2444322 1335779997777664 4455669999
Q ss_pred EEEEccCCccC-------CCCcceEEEEEechhh
Q 008950 493 EVMSKRTGIRF-------WSKESLGHVEINLTDV 519 (548)
Q Consensus 493 ~V~d~~~~~~~-------~~d~~lG~~~i~L~~l 519 (548)
.+|+.... +. ..+..||.++++|-+-
T Consensus 87 tl~~~~~~-~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSS-PDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecC-CccccccccccceEEEEEeEeeEcc
Confidence 99987532 00 1357999999999774
No 276
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.59 E-value=2.3 Score=37.44 Aligned_cols=56 Identities=20% Similarity=0.378 Sum_probs=39.9
Q ss_pred EeeeccCC-CCCccCceEEEE--ccCCCCCCeEEEEEEEccCCccCCCC----cceEEEEEechhh
Q 008950 461 RTKMIRKT-RDPAWNEEFQFM--LDEPPLHEKIHIEVMSKRTGIRFWSK----ESLGHVEINLTDV 519 (548)
Q Consensus 461 kT~v~~~t-~nP~wne~f~f~--v~~~~~~~~l~v~V~d~~~~~~~~~d----~~lG~~~i~L~~l 519 (548)
.|+....+ .++.|||..+|. +.+.+.+..|.+.|+..+.. ..+ ..||.++++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~---~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK---KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS---TTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC---CccccceeEEEEEEEEeECC
Confidence 56666655 799999977766 55666778999999997642 222 6999999999876
No 277
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=88.69 E-value=4.7 Score=37.21 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=34.5
Q ss_pred eeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEEcCCCCCC---CeeEEEEEECcc
Q 008950 300 WKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGGH---DRLGMQLVPLKL 355 (548)
Q Consensus 300 ~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~~d---d~lG~~~i~l~~ 355 (548)
...|.+..++.+|.|+|+|.+.+... ....|.|++++...-.+. ..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45788888999999999999988643 356799999987643222 689999999887
No 278
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=88.49 E-value=5.4 Score=36.94 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=41.9
Q ss_pred ceeeeeeecCCCCCeeeceEEEEEec--CCCCEEEEEEEEcCCC-CCC---CeeEEEEEECc
Q 008950 299 PWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVFDWDKV-GGH---DRLGMQLVPLK 354 (548)
Q Consensus 299 ~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~d~d~~-~~d---d~lG~~~i~l~ 354 (548)
...+|.|.....+|.|+|++.+.+.. .....|.|++++.... .+| ...|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 44688888899999999999988863 2466799999886421 122 47898888884
No 279
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=86.58 E-value=1.5 Score=42.88 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=72.9
Q ss_pred CCceEEEEEEeeeecCCC----CC-CCCcEEEEEEcCeEE-EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950 426 SGAGLLSVLVQGAEDVEG----EN-HNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT 499 (548)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~----~~-~~dpyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 499 (548)
..+|+|.+++..+++|.- +| .-+-|+.+....+.+ +|.+.....--.|.|.|+..+.+. +.+++-|+.++.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~---~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI---EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc---eeeeEEEeecCc
Confidence 357999999999999853 12 456788888755433 566554455556889999987753 568888888764
Q ss_pred CccCCCCcceEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEE
Q 008950 500 GIRFWSKESLGHVEINLTDVVHNGRINEKYHLINSKRGVIHVDIRWK 546 (548)
Q Consensus 500 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~ 546 (548)
. .-++=+.+| -+.+..+.. ..-++.+-|.-.+.|++.+++.+.
T Consensus 125 q-~RHKLC~~g--~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 125 Q-RRHKLCHLG--LLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPLA 167 (442)
T ss_pred h-hhccccccc--hhhhhhhhh-cCCcceeeeecccCCCCceecccC
Confidence 3 012224456 233333332 223456777666788888877653
No 280
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.07 E-value=4.3 Score=33.31 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=46.8
Q ss_pred EEEEEEEecCccccCCCCCCCcEEEEEE--cCcccc-eeeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEEEcC
Q 008950 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD 338 (548)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d 338 (548)
+.+++..+.+.........+|-||.+.+ |++... ...|+.+.-...+.|||...|++. + +....|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566677766655433233578888755 443331 124555555666999999988764 2 34678999999965
No 281
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=84.05 E-value=4.6 Score=37.24 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=34.7
Q ss_pred EEEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCccCCCCcceEEEEEechh
Q 008950 459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGIRFWSKESLGHVEINLTD 518 (548)
Q Consensus 459 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~ 518 (548)
...|.+.+++.+|.|+|+|.+.++..... ..|.+++++...+.+...+..+|.+-++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 35888999999999999999999875322 3788888886543111112799999999987
No 282
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=81.38 E-value=29 Score=31.99 Aligned_cols=107 Identities=14% Similarity=0.210 Sum_probs=62.0
Q ss_pred hhcccCCceeeeeccccccccccCCce-EEEEEEEEecCccccCCCCCCCcEEEEEEcCcc--cceeeeeeecCCCCCee
Q 008950 238 AGIYIWPQTYEIPILDASSVAIKKPVG-ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEW 314 (548)
Q Consensus 238 ~~~~v~P~~~~~~l~~~~~~~~~~~~g-~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~W 314 (548)
...+|+|..+.+.-... ...+.+ .++|.+.+..+- ...|.-.++.+... .....|.|...+.+|.|
T Consensus 3 N~LYVYP~~l~~~~~k~----~~kaRNI~V~V~lrd~D~~-------~~~~l~~I~~g~g~~~~~~~~s~V~yh~k~P~f 71 (185)
T cd08697 3 NHLYVYPLHLKYDSQKT----FAKARNIAVCIEFRDSDEE-------DAKPLKCIYYGPGGGFTTSAYAAVLHHNQNPEF 71 (185)
T ss_pred ceEEEcccEEEeccccc----ccccccEEEEEEEEeCCCC-------cCccceEEecCCCCCcceEEEEEEEEcCCCCcc
Confidence 34678888877653211 112222 255666555331 11222223333221 23467888889999999
Q ss_pred eceEEEEEecC--CCCEEEEEEEEcCCC--C-------CCCeeEEEEEECcc
Q 008950 315 NENFKLVVKEP--ESQILQLQVFDWDKV--G-------GHDRLGMQLVPLKL 355 (548)
Q Consensus 315 ne~f~f~v~~~--~~~~L~v~v~d~d~~--~-------~dd~lG~~~i~l~~ 355 (548)
+|++.+.+.-. ....|.|+.|+.+.. . ....+|-+.+||-.
T Consensus 72 ~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 72 YDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred ceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 99998887532 356799999986521 1 12457887777755
No 283
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=80.05 E-value=9.4 Score=31.79 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=45.1
Q ss_pred eeeeeecCCCCCeeeceEEEEEecC-------CCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCc--eEEEEecccc
Q 008950 301 KKTTVKKKNLNPEWNENFKLVVKEP-------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHET--KEFTLDLLKH 371 (548)
Q Consensus 301 ~~T~v~~~t~nP~Wne~f~f~v~~~-------~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~--~~~~l~l~~~ 371 (548)
..|.++. +.||.+|-+-.|.|... .+..+.++++..- ....+.+|.+.+++..+.+... ......+...
T Consensus 13 q~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g~ 90 (107)
T PF11618_consen 13 QTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNGERIHGSATLVGV 90 (107)
T ss_dssp EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S--EEEEEEE-BS
T ss_pred eccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCCceEEEEEEEecc
Confidence 4677765 88999998888888632 2568999999976 2345789999999999985543 2233343221
Q ss_pred ccCCCCCCCccccEEEEEEEEE
Q 008950 372 TNISDPKDMKQRGKIVVELTYV 393 (548)
Q Consensus 372 ~~~~~~~~~~~~G~l~l~l~~~ 393 (548)
++..-|.|.+.++..
T Consensus 91 -------~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 91 -------SGEDFGTLEYWIRLR 105 (107)
T ss_dssp -------SS-TSEEEEEEEEEE
T ss_pred -------CCCeEEEEEEEEEec
Confidence 234778888877653
No 284
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=79.86 E-value=2.4 Score=47.56 Aligned_cols=97 Identities=14% Similarity=0.238 Sum_probs=75.7
Q ss_pred CCCcEEEEEEcCeEE-EeeeccCC-CCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhccc
Q 008950 446 HNNPYAIILYKGDKK-RTKMIRKT-RDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHNG 523 (548)
Q Consensus 446 ~~dpyv~v~l~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~~ 523 (548)
..++|+.+.+..... +|....+. .+|.|.+.|+..+... ...+++.+.+.+- .+....+|.+.++...++++.
T Consensus 137 ~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~--~g~v~~~~~~~~~---~G~s~~w~~v~~s~~~~~~~~ 211 (887)
T KOG1329|consen 137 TLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK--AGYVIFRVKGARV---PGWSKRWGRVKISFLQYCSGH 211 (887)
T ss_pred hccchheeeechhhhhchhhhhcccccchhhhhcccccccc--ccEEEEeecCCcc---ccceeEEEEeccchhhhhccc
Confidence 478999999987664 88888776 8899999998887764 4578888877763 344789999999999999988
Q ss_pred eeceEEEeCCC------CCeEEEEEEEEEe
Q 008950 524 RINEKYHLINS------KRGVIHVDIRWKM 547 (548)
Q Consensus 524 ~~~~w~~L~~~------~~G~i~l~~~~~~ 547 (548)
...+|+++.+. +...+.+++.+++
T Consensus 212 ~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~ 241 (887)
T KOG1329|consen 212 RIGGWFPILDNDGKPHQKGSNESLRLGFTP 241 (887)
T ss_pred cccceeeeeccCCccccCCcccceEEeeEe
Confidence 88899988654 2445666676665
No 285
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=79.43 E-value=15 Score=36.63 Aligned_cols=110 Identities=12% Similarity=0.230 Sum_probs=74.5
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeccCCCCCc--cCceEEEEccCCCCCCeEEEEEEEccCCccCCCC
Q 008950 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPA--WNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSK 506 (548)
Q Consensus 429 g~L~V~v~~a~~L~~~~~~dpyv~v~l~~~~~kT~v~~~t~nP~--wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d 506 (548)
-.|-|.|++..++.. ....|+.+..+....+|..+.-+..-. -.+.....++. .+..|.+.++-.. +.+.
T Consensus 58 F~LLVeI~EI~~i~k--~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKk----Lvkk 129 (508)
T PTZ00447 58 FYLLVKINEIFNINK--YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTK----LTKK 129 (508)
T ss_pred eeEEEEehhhhcccc--ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEecc----ccce
Confidence 446677777777765 356799999999888886665433332 23555555554 2457888888774 7788
Q ss_pred cceEEEEEechhh-hccc-eeceEEEeCCCCCeEEEEEEEEE
Q 008950 507 ESLGHVEINLTDV-VHNG-RINEKYHLINSKRGVIHVDIRWK 546 (548)
Q Consensus 507 ~~lG~~~i~L~~l-~~~~-~~~~w~~L~~~~~G~i~l~~~~~ 546 (548)
.-||.+.+.+.+- +... ..++||.+...+...-++.+.|+
T Consensus 130 ~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 130 VHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred eEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEeh
Confidence 9999999999764 4433 45789999777654444555543
No 286
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=78.61 E-value=24 Score=32.30 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=39.0
Q ss_pred eeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEEcCCC-----CCCCeeEEEEEECcc
Q 008950 301 KKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV-----GGHDRLGMQLVPLKL 355 (548)
Q Consensus 301 ~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~-----~~dd~lG~~~i~l~~ 355 (548)
++|.+..+ .+|.|+|++.+.+... ....|.|++++...- .....+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 9999999999988533 367899999997632 234578999888875
No 287
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=78.57 E-value=7.1 Score=32.01 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=44.0
Q ss_pred EEEEEeeeecCCCCC---CCCcEEEEEE--cCeE----EEeeeccCCCCCccCceEEEEcc--CCCCCCeEEEEEEEcc
Q 008950 431 LSVLVQGAEDVEGEN---HNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSKR 498 (548)
Q Consensus 431 L~V~v~~a~~L~~~~---~~dpyv~v~l--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~ 498 (548)
+.+.+..+++..... ..+-||++.+ |++. ..|+.+.-...+.|||-.+|++. +.+.+..|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 445666666665421 2377888755 4443 25555555666899998777654 4455679999999864
No 288
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=77.96 E-value=7.7 Score=35.82 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=41.2
Q ss_pred EEEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCccCCCCcceEEEEEech
Q 008950 459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGIRFWSKESLGHVEINLT 517 (548)
Q Consensus 459 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~ 517 (548)
..+|.+.+++.+|.|+|++.+.++..... ..|.++++...... -.....+|..-++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~-k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKD-KGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeecc-CCCCCceEEEEEeec
Confidence 35899999999999999999998764222 36777777654320 112267999989884
No 289
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=74.93 E-value=11 Score=34.90 Aligned_cols=60 Identities=12% Similarity=0.260 Sum_probs=42.2
Q ss_pred eEEEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCc-cCCCCcceEEEEEech
Q 008950 458 DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGI-RFWSKESLGHVEINLT 517 (548)
Q Consensus 458 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~-~~~~d~~lG~~~i~L~ 517 (548)
...+|-+.+.+.+|.|+|++...++..... ..|.++++...... +......+|..-++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346889999999999999999988764222 36888887654210 0112367999889884
No 290
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=73.46 E-value=17 Score=30.23 Aligned_cols=92 Identities=16% Similarity=0.254 Sum_probs=49.8
Q ss_pred EEEEEEcC-eEEEeeeccCCCCCccCceEEEEccCCC------CCCeEEEEEEEccCCccCCCCcceEEEEEechhhhcc
Q 008950 450 YAIILYKG-DKKRTKMIRKTRDPAWNEEFQFMLDEPP------LHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHN 522 (548)
Q Consensus 450 yv~v~l~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~------~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~ 522 (548)
|+.+.+-. +.+.|.++. ..+|.+|-+-.|.|.... ....+.++++.... ..-..+|.+++++..++++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g----~d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG----SDFETLAAGQISLRPLLES 76 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S----S-EEEEEEEEE--SHHHH-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc----CCeEEEEEEEeechhhhcC
Confidence 44444444 445666665 899999998888887531 12378999988652 2357999999999999965
Q ss_pred c--eeceEEEeCCC---CCeEEEEEEEEE
Q 008950 523 G--RINEKYHLINS---KRGVIHVDIRWK 546 (548)
Q Consensus 523 ~--~~~~w~~L~~~---~~G~i~l~~~~~ 546 (548)
. .+...-.|.+. .-|.+...++.+
T Consensus 77 ~~~~i~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 77 NGERIHGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp -S--EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred CCceEEEEEEEeccCCCeEEEEEEEEEec
Confidence 3 45666677544 368888887765
No 291
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=72.66 E-value=9.7 Score=42.93 Aligned_cols=106 Identities=14% Similarity=0.195 Sum_probs=75.7
Q ss_pred CCcEEEEEEcCcccceeeeeeecCC-CCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceE
Q 008950 285 SDPYVKLSLTGEKLPWKKTTVKKKN-LNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKE 363 (548)
Q Consensus 285 ~dpyv~v~l~~~~~~~~~T~v~~~t-~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l~~~~~~~ 363 (548)
.++|+.+.+..... .+|....+. .+|.|++.|....... ...+.+.+-+.+..+....+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~~~~~--~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARY--RRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeechhhh--hchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 58999999986654 466666666 8899999998887664 3578899988887776789999999999999876666
Q ss_pred EEEeccccccCCCCCCCccccEEEEEEEEEeccc
Q 008950 364 FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (548)
Q Consensus 364 ~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 397 (548)
.++++...- . ......-.+.+++.|.+...
T Consensus 215 ~~~~Il~~d-~---~~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 215 GWFPILDND-G---KPHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred ceeeeeccC-C---ccccCCcccceEEeeEeech
Confidence 666654321 1 11122235667777777755
No 292
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=71.50 E-value=1.5 Score=34.75 Aligned_cols=45 Identities=27% Similarity=0.407 Sum_probs=39.0
Q ss_pred cCCchhHhhhCCCCCCceeCCCCcchHHHHHHHHhhchhHHHHHH
Q 008950 49 ELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAIC 93 (548)
Q Consensus 49 ~~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~ 93 (548)
+.|.+.++--|++||+|+--.|.-.-.-.|.+....|.+.+.+++
T Consensus 26 k~D~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~ 70 (108)
T KOG4092|consen 26 KKDKKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYIN 70 (108)
T ss_pred cccceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheec
Confidence 455566666789999999999999999999999999999988886
No 293
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=67.87 E-value=3.9 Score=27.26 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=9.2
Q ss_pred HHHHheeeeeeecC
Q 008950 22 LLVGFFLFIYSKPN 35 (548)
Q Consensus 22 ~~~~~~~~~~~~~~ 35 (548)
++++++++.|||+.
T Consensus 26 ~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 26 IVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHhheEEecc
Confidence 44566777778664
No 294
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=66.44 E-value=20 Score=32.93 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=41.1
Q ss_pred ceeeeeeecCCCCCeeeceEEEEEecC--CCCEEEEEEEEcCCCCC------CCeeEEEEEECcc
Q 008950 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGG------HDRLGMQLVPLKL 355 (548)
Q Consensus 299 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~~------dd~lG~~~i~l~~ 355 (548)
....|.|...+.+|.|+|++.+.+... ....|.|+.|+.+.-.+ ...+|-+.+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 346788889999999999999887633 35678999998653221 2457777777653
No 295
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=62.59 E-value=33 Score=31.42 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=42.7
Q ss_pred eEEEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCcc---CCCCcceEEEEEechh
Q 008950 458 DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGIR---FWSKESLGHVEINLTD 518 (548)
Q Consensus 458 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~~---~~~d~~lG~~~i~L~~ 518 (548)
....|.|.+++.+|.|+|++...++-.... ..|.+++++-....+ -.....+|..-+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 345889999999999999999988765222 367788877443211 1123569999898854
No 296
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=58.05 E-value=33 Score=31.40 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=40.2
Q ss_pred EeeeccCCCCCccCceEEEEccCCC-CCCeEEEEEEEccCCcc--CCCCcceEEEEEechh
Q 008950 461 RTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSKRTGIR--FWSKESLGHVEINLTD 518 (548)
Q Consensus 461 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~~--~~~d~~lG~~~i~L~~ 518 (548)
-|.++....+|.|+|+|...++... ....|.+++++-..... -.....+|.+-++|-+
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3444555599999999999996542 13478888887653210 1346789999999976
No 297
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=55.61 E-value=10 Score=42.54 Aligned_cols=74 Identities=24% Similarity=0.237 Sum_probs=56.2
Q ss_pred cccCCceEEEEEEEEecCccccCCCCCCCcEEEEEEcCc--ccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEE
Q 008950 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (548)
Q Consensus 258 ~~~~~~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~ 335 (548)
+.+...|.+.+.+++|..++.. ..-||...+..- -..+.+|.++.+|..|.||+.|+..+.. .+.+++..+
T Consensus 753 eSpl~ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ 825 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKT 825 (1112)
T ss_pred cCcccccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhh
Confidence 4566789999999999998753 467888776532 2334689999999999999999888764 566677777
Q ss_pred EcC
Q 008950 336 DWD 338 (548)
Q Consensus 336 d~d 338 (548)
+.+
T Consensus 826 ek~ 828 (1112)
T KOG4269|consen 826 EKS 828 (1112)
T ss_pred ccc
Confidence 654
No 298
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=53.94 E-value=56 Score=30.12 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=42.8
Q ss_pred eEEEeeeccCCCCCccCceEEEEccCCCCC-CeEEEEEEEccCCc------cCCCCcceEEEEEechh
Q 008950 458 DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSKRTGI------RFWSKESLGHVEINLTD 518 (548)
Q Consensus 458 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~------~~~~d~~lG~~~i~L~~ 518 (548)
....|.|..++.+|.|+|++...++-.... ..|.+++++-.... .-.....+|..-+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 356899999999999999999888764222 26778887754210 01123579999999865
No 299
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=50.86 E-value=5.5 Score=43.99 Aligned_cols=91 Identities=21% Similarity=0.355 Sum_probs=70.8
Q ss_pred cchHHHHHHHHhhchhHHHH--HHHHHHHHHHhhHhh-ccCcceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEee
Q 008950 72 ERVDWLNRFLSDMWPYLDKA--ICANVRTTAQPIFDE-YSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEP 147 (548)
Q Consensus 72 E~~~WlN~~l~~~Wp~~~~~--~~~~i~~~~~~~l~~-~~p~~~l~~~~~~~~~lG~~~P~i~~v~~~~~-~~~~~~ld~ 147 (548)
|..-|||.++.++..-+.+. ..+.+.+.++.++.. ..|.+ ++.+--.+++-|..||.|++-++... .....-++.
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~-~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~ 412 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSY-IEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEI 412 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchh-hhhhhhhhhhhcCCccccccceeEEeeccccccCcc
Confidence 45789999999998755433 555666667776655 46887 99999999999999999999999875 445567788
Q ss_pred eeeEeCCCcEEEEEEE
Q 008950 148 ALRWAGNPNIVLVLKL 163 (548)
Q Consensus 148 ~~~~~~~~~i~l~~~~ 163 (548)
|+.|.||..+.++.++
T Consensus 413 di~y~~d~~~~i~~~v 428 (795)
T KOG2238|consen 413 DIEYRGDLTIIIETRV 428 (795)
T ss_pred ceeecccccccccccc
Confidence 9999998877766554
No 300
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=49.98 E-value=52 Score=37.28 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=58.4
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEE----cCe----EEEeeeccCCCCCccCceEEEEc--cCCCCCCeEEEEEEEc
Q 008950 428 AGLLSVLVQGAEDVEGENHNNPYAIILY----KGD----KKRTKMIRKTRDPAWNEEFQFML--DEPPLHEKIHIEVMSK 497 (548)
Q Consensus 428 ~g~L~V~v~~a~~L~~~~~~dpyv~v~l----~~~----~~kT~v~~~t~nP~wne~f~f~v--~~~~~~~~l~v~V~d~ 497 (548)
...++++++++..+.....-|-+|.|.. |++ ++.|+.+..+.+|.||+..+|.+ .+.|....|.+.|+.-
T Consensus 342 ~~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred CCceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 3457888888876655444555555554 332 24666677789999999766655 4555555777777654
Q ss_pred c-------------CCccCCCCcceEEEEEechhh
Q 008950 498 R-------------TGIRFWSKESLGHVEINLTDV 519 (548)
Q Consensus 498 ~-------------~~~~~~~d~~lG~~~i~L~~l 519 (548)
. ....-+.+..+|.+++.|.|-
T Consensus 422 ~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~ 456 (1076)
T KOG0904|consen 422 KAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDH 456 (1076)
T ss_pred echhccccccchhhhhccccccCceEEEeeeeeec
Confidence 1 000123466899999888664
No 301
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.08 E-value=5 Score=43.84 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=46.1
Q ss_pred CCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCCCCEEEEEEEEcCCCCCCCeeEEEEEECccc
Q 008950 284 TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356 (548)
Q Consensus 284 ~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~dd~lG~~~i~l~~l 356 (548)
..|||+.+.+.-... ..+.+.+.+.+|.|+++|...+.. ...+.+.|+.......+.+...+++..+++
T Consensus 27 al~~y~~v~vk~~~~--~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~ 95 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQG--AENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQ 95 (694)
T ss_pred hhhhhheeccceeec--ccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHH
Confidence 458888888764332 244456789999999999999764 567889999876544444444444433333
No 302
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=43.67 E-value=17 Score=29.98 Aligned_cols=43 Identities=28% Similarity=0.396 Sum_probs=35.0
Q ss_pred CchhHhhhCCCCCCceeCCCCcchHHHHHHHHhhchhHHHHHH
Q 008950 51 DTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAIC 93 (548)
Q Consensus 51 ~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~ 93 (548)
|..-+.--|++||+|+.-.|......++.+-...|-+.+.++.
T Consensus 28 Dt~l~dVKLgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~ 70 (104)
T PF10206_consen 28 DTPLMDVKLGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYIN 70 (104)
T ss_pred CCchhheecchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 3333334578999999999999999999999999998887774
No 303
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=43.30 E-value=2.5e+02 Score=25.29 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=52.9
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEc----------Ce-EEEeeeccCC-----CCCccCceEEEEccCCCCC--CeEEE
Q 008950 431 LSVLVQGAEDVEGENHNNPYAIILYK----------GD-KKRTKMIRKT-----RDPAWNEEFQFMLDEPPLH--EKIHI 492 (548)
Q Consensus 431 L~V~v~~a~~L~~~~~~dpyv~v~l~----------~~-~~kT~v~~~t-----~nP~wne~f~f~v~~~~~~--~~l~v 492 (548)
+.-.|.+|.+... .+-||+-.+. .. ...|.+.+.. ..-.||..|++........ -.|.+
T Consensus 4 v~G~I~~a~~f~~---~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 4 VIGEIESAEGFEE---DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEEEEECCCC---CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 3446778887654 4678887651 12 3456655432 3346998887776653221 38999
Q ss_pred EEEEccCCccCCCCcceEEEEEech
Q 008950 493 EVMSKRTGIRFWSKESLGHVEINLT 517 (548)
Q Consensus 493 ~V~d~~~~~~~~~d~~lG~~~i~L~ 517 (548)
+|+..|. .+++.+.|...+.|-
T Consensus 81 ~V~~~D~---~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 81 QVYSLDS---WGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEcc---cCCeEEeEEeEEEeC
Confidence 9999885 678888888777663
No 304
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=29.94 E-value=2.3e+02 Score=24.17 Aligned_cols=90 Identities=10% Similarity=0.118 Sum_probs=49.6
Q ss_pred EEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCCee-eceEEEEEe--cCCCCEEEEEEEEcCC-C
Q 008950 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW-NENFKLVVK--EPESQILQLQVFDWDK-V 340 (548)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~--~~~~~~L~v~v~d~d~-~ 340 (548)
.|.++=+.-.+.|.-+..+.+.||++++-++.... .|.... ...... ...+.+.+. -+-...+.|++|+.+. .
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~--~~~~~~-~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVF--STSKSY-EDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEE--ETCCTC-CCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEE--Eeccce-eccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 34444455566666555678899999998765531 111111 111111 122333332 1124578999999873 3
Q ss_pred CCCCeeEEEEEECcccC
Q 008950 341 GGHDRLGMQLVPLKLLT 357 (548)
Q Consensus 341 ~~dd~lG~~~i~l~~l~ 357 (548)
..++.+.++.+.-.-+.
T Consensus 82 ~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 82 MSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCCEEEEEEEEEGGGSB
T ss_pred cccCeEEEEEEeeeeee
Confidence 45677888888766555
No 305
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=29.75 E-value=3.8e+02 Score=23.44 Aligned_cols=74 Identities=23% Similarity=0.241 Sum_probs=53.7
Q ss_pred CCCCCcEEEEEEcCeEEEeeeccCCCCCccCceEEEEccCC-----------CCCCeEEEEEEEccCCccCCCCcceEEE
Q 008950 444 ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEP-----------PLHEKIHIEVMSKRTGIRFWSKESLGHV 512 (548)
Q Consensus 444 ~~~~dpyv~v~l~~~~~kT~v~~~t~nP~wne~f~f~v~~~-----------~~~~~l~v~V~d~~~~~~~~~d~~lG~~ 512 (548)
....|.|..|++.|+-++|+-.....-=.++|.|.|.-.-. -..+.+.++++.... .....|+..
T Consensus 17 ~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~----~~g~iLA~y 92 (140)
T PF14909_consen 17 CDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVP----PAGEILAYY 92 (140)
T ss_pred CCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeC----CCCcEEEEE
Confidence 35679999999999999999875555445788888853211 113478888887653 126899999
Q ss_pred EEechhhhc
Q 008950 513 EINLTDVVH 521 (548)
Q Consensus 513 ~i~L~~l~~ 521 (548)
.-+++|++-
T Consensus 93 e~n~rDfLf 101 (140)
T PF14909_consen 93 EENTRDFLF 101 (140)
T ss_pred eccccceEc
Confidence 999998864
No 306
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.65 E-value=3.5e+02 Score=24.12 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=31.4
Q ss_pred CCCCC-eeeceEEEEEec--CC-CCEEEEEEEEcCCCCCCCeeEEEEEECc
Q 008950 308 KNLNP-EWNENFKLVVKE--PE-SQILQLQVFDWDKVGGHDRLGMQLVPLK 354 (548)
Q Consensus 308 ~t~nP-~Wne~f~f~v~~--~~-~~~L~v~v~d~d~~~~dd~lG~~~i~l~ 354 (548)
+-.|| +||--++..... +. =..|.+.||..|..++|...|...+.+-
T Consensus 59 ~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 59 GADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred cCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 33343 677555444432 22 2468899999999999999998777653
No 307
>PF15102 TMEM154: TMEM154 protein family
Probab=29.33 E-value=79 Score=27.76 Aligned_cols=14 Identities=29% Similarity=0.282 Sum_probs=8.1
Q ss_pred HHheeeeeeecCCc
Q 008950 24 VGFFLFIYSKPNDD 37 (548)
Q Consensus 24 ~~~~~~~~~~~~~r 37 (548)
++.++.+||||+|.
T Consensus 74 ~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 74 SVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHheeEEeeccc
Confidence 34556667766553
No 308
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=29.19 E-value=13 Score=29.16 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=18.9
Q ss_pred ccccccchhhHHHHHheeeeeee--cCCcccccccccccccCC
Q 008950 11 LGFGFIGLPLGLLVGFFLFIYSK--PNDDQVEEPLVTPLCELD 51 (548)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~ 51 (548)
-|+|.+++++.+++-.++.+|+. ..||+++.++.|+..-++
T Consensus 31 ~~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPIYrPvI~~~ 73 (94)
T PF05393_consen 31 PNLGMWFLVICGIFILLVILWFVCCKKRKRSRRPIYRPVIGLE 73 (94)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccC
Confidence 35554554444332212222332 223336677778766543
No 309
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=29.11 E-value=39 Score=29.83 Aligned_cols=10 Identities=20% Similarity=0.594 Sum_probs=4.3
Q ss_pred eeeeeeecCC
Q 008950 27 FLFIYSKPND 36 (548)
Q Consensus 27 ~~~~~~~~~~ 36 (548)
++|+|+.+++
T Consensus 69 lvf~~c~r~k 78 (154)
T PF04478_consen 69 LVFIFCIRRK 78 (154)
T ss_pred hheeEEEecc
Confidence 3444444433
No 310
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=28.69 E-value=2.4e+02 Score=32.29 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=44.8
Q ss_pred eEEEEEEEEecCccccCCCCCCCcEEEEEE----cCcccce-eeeeeecCCCCCeeeceEEEEEe--c-CCCCEEEEEEE
Q 008950 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEKLPW-KKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVF 335 (548)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l----~~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~ 335 (548)
..++|+++++.++.- ....|-+|.|.. |++..-+ ..|+-+..+.+|.||+..+|.+. + |....|.+.||
T Consensus 343 ~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 357888888776532 234466666554 3333322 34555556889999999888876 3 23567788887
Q ss_pred Ec
Q 008950 336 DW 337 (548)
Q Consensus 336 d~ 337 (548)
.-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 64
No 311
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.25 E-value=24 Score=38.77 Aligned_cols=91 Identities=13% Similarity=-0.001 Sum_probs=54.9
Q ss_pred CCCcEEEEEEcCeEE-EeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccCCccCCCCcceEEEEEechhhhcc-c
Q 008950 446 HNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHN-G 523 (548)
Q Consensus 446 ~~dpyv~v~l~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~-~ 523 (548)
..+||+.+.+.-+.. ++.+.+.+..|.|+++|...+... ..+.+.|+.+.. ...+.....+++-.+++... .
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~---~~~~i~v~~~~~---~~~~~~~a~~~~~~e~~k~~~~ 100 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG---GAKNIIVLLKSP---DPKALSEAQLSLQEESQKLLAL 100 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC---CceEEEEEecCC---cchhhHHHhHHHHHHHHHHHhh
Confidence 468899988866554 666678899999999999997653 468888887642 22233333333333333321 1
Q ss_pred eeceEEEeCCCCCeEEEEEEE
Q 008950 524 RINEKYHLINSKRGVIHVDIR 544 (548)
Q Consensus 524 ~~~~w~~L~~~~~G~i~l~~~ 544 (548)
...-|..+. +.|++.+.++
T Consensus 101 ~~~~w~~~~--~~g~~~~~~~ 119 (694)
T KOG0694|consen 101 EQRLWVLIE--ELGTLLKPAA 119 (694)
T ss_pred hhhhccccc--cccceeeeec
Confidence 123355433 3566665544
No 312
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=28.12 E-value=6.4e+02 Score=25.61 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=68.4
Q ss_pred ceEEEEEEEEecCccccCCCCCCCcEEEEEEcCcccceeeeeeecCCCCC--eeeceEEEEEecCCCCEEEEEEEEcCCC
Q 008950 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP--EWNENFKLVVKEPESQILQLQVFDWDKV 340 (548)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP--~Wne~f~f~v~~~~~~~L~v~v~d~d~~ 340 (548)
.-.|-|.|.+-.++.. ....|+.++.|.... +|..+..+..- .-+|.....+. ....+|++.+|-.. +
T Consensus 57 kF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~---TT~~IpTsKK~RI~IqqRV~IkIR-QcDnTLkI~lfKKk-L 126 (508)
T PTZ00447 57 TFYLLVKINEIFNINK-----YKHIYIIFSTDKYDF---TTDEIPTNKKNRIHIDQRVDIKIR-QCDETLRVDLFTTK-L 126 (508)
T ss_pred eeeEEEEehhhhcccc-----ceeEEEEEEcCceEE---EccccccCcCceEEEeeeeeeeee-ecCceEEEEEEecc-c
Confidence 3567788877766543 346899999886553 44333322221 12233333333 35678999999886 4
Q ss_pred CCCCeeEEEEEECcc-cCC-CCceEEEEeccccccCCCCCCCccccEEEEEE
Q 008950 341 GGHDRLGMQLVPLKL-LTP-HETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (548)
Q Consensus 341 ~~dd~lG~~~i~l~~-l~~-~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 390 (548)
.+...||...+.+.. +.. .-++..|+.+.+ ++...+.|.+++
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~k--------DGq~~cRIqLSF 170 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFK--------DGQEICKVQMSF 170 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEec--------CCceeeeEEEEe
Confidence 567899999999864 333 335556666643 366778888776
No 313
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=27.33 E-value=56 Score=37.04 Aligned_cols=89 Identities=24% Similarity=0.256 Sum_probs=60.1
Q ss_pred cCCceEEEEEEeeeecCCCCCCCCcEEEEEEc-----CeEEEeeeccCCCCCccCceEEEEccCCCCCCeEEEEEEEccC
Q 008950 425 LSGAGLLSVLVQGAEDVEGENHNNPYAIILYK-----GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT 499 (548)
Q Consensus 425 ~~~~g~L~V~v~~a~~L~~~~~~dpyv~v~l~-----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 499 (548)
+...|.+.+.+++|..+.. ..+-||...+. ..+.+|+++.+|..|.||+.|+..+... +...++.++++.
T Consensus 755 pl~ygflh~~vhsat~lkq--s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s---qS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 755 PLLYGFLHVIVHSATGLKQ--SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES---QSSRLEKTEKST 829 (1112)
T ss_pred cccccceeeeecccccccc--ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc---cccchhhhcccc
Confidence 3456889999999988865 35667776542 2445999999999999999999877653 455566655543
Q ss_pred C-------ccCCCCcceEEEEEechh
Q 008950 500 G-------IRFWSKESLGHVEINLTD 518 (548)
Q Consensus 500 ~-------~~~~~d~~lG~~~i~L~~ 518 (548)
. .+...+...|+.++.+.-
T Consensus 830 ~~~k~~~~~~~~~~~~~~~~~~~l~~ 855 (1112)
T KOG4269|consen 830 PVEKLIDSHSQNSQNEEKRSRMKLDP 855 (1112)
T ss_pred hHHHhhhccchhhcccccccccccCc
Confidence 2 113445566666665543
No 314
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=25.73 E-value=7.3e+02 Score=26.01 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=37.5
Q ss_pred CEEEEEEEEcCC-----C-CCCCeeEEEEEECcccCC-CCc---eEEEEeccccccCCCCCCCccccEEEEEEEEEec
Q 008950 328 QILQLQVFDWDK-----V-GGHDRLGMQLVPLKLLTP-HET---KEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (548)
Q Consensus 328 ~~L~v~v~d~d~-----~-~~dd~lG~~~i~l~~l~~-~~~---~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 395 (548)
..|+|.||.-.. + .+..+||.+.+++.--.. +.. +.-|+.+-+... ........+||+.+.-.|.
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~---~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQ---GSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCC---CCCCCCcceEEEEEeccCC
Confidence 579999998432 1 355799999999873222 221 233555422110 1112246789998876553
No 315
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=25.24 E-value=2.8e+02 Score=23.04 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=38.8
Q ss_pred eEEEEEEEccCCccCCCCcceEEEEEechhhhcc--------------ceeceEEEeCCC---CCeEEEEEEEEE
Q 008950 489 KIHIEVMSKRTGIRFWSKESLGHVEINLTDVVHN--------------GRINEKYHLINS---KRGVIHVDIRWK 546 (548)
Q Consensus 489 ~l~v~V~d~~~~~~~~~d~~lG~~~i~L~~l~~~--------------~~~~~w~~L~~~---~~G~i~l~~~~~ 546 (548)
.|.+.++.-..+........+|.+.+++.+...+ ....+.|+|.+. ..|.|.|.++..
T Consensus 30 pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLs 104 (112)
T PF14924_consen 30 PLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLS 104 (112)
T ss_pred ceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEe
Confidence 5667665543211124567899999999887631 145678999774 479999888754
No 316
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=23.06 E-value=72 Score=29.50 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=27.8
Q ss_pred CCchhHhhhCCCCCCceeCCCCcchHHHHHHHHhhchhHHHHHHHHHH
Q 008950 50 LDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVR 97 (548)
Q Consensus 50 ~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~~~i~ 97 (548)
.+++.+.+++ |.|.+..+|||.++ ||.+...+.+.+.
T Consensus 65 idr~~L~~~v--------f~~~~~~~~L~~i~---hP~v~~~~~~~~~ 101 (194)
T PRK00081 65 LDRAKLRELV--------FSDPEARKKLEAIL---HPLIREEILEQLQ 101 (194)
T ss_pred cCHHHHHHHH--------hCCHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4555565553 78999999999998 8988777766554
No 317
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=21.22 E-value=7.1e+02 Score=26.25 Aligned_cols=58 Identities=10% Similarity=0.177 Sum_probs=28.8
Q ss_pred EEEEEEEEEecCCCCCCceeEEEEEcCCCceEEEEEEEccccccccchhHHHHHHHHHHHhhhcccCC
Q 008950 177 IFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWP 244 (548)
Q Consensus 177 ~~g~~rv~l~pl~~~~P~~~~~~~~f~~~P~id~~~~~~g~~~~~~P~l~~~i~~~i~~~~~~~~v~P 244 (548)
+.|++.+.=+|..+..-. +++| -++||++..-+ .-+-...-+.+..|.+.++..+++|
T Consensus 309 ~~G~i~l~G~P~yD~~~~----~l~l---~dld~~~~t~~---~l~~~a~wl~~~~i~~~i~~~~~~~ 366 (427)
T PF14356_consen 309 LNGTIYLSGRPVYDPATQ----TLRL---EDLDFDLDTKN---FLLKTAAWLLHGRIRKAIEEKLVFD 366 (427)
T ss_pred EEEEEEEEEEEEECCCCC----EEEE---EeeEEEecccc---hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455555554544442211 2333 46677765432 1112223445777777777766544
No 318
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.88 E-value=18 Score=25.20 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=10.7
Q ss_pred hhHHHHHheeeeeeecCC
Q 008950 19 PLGLLVGFFLFIYSKPND 36 (548)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (548)
++++.+|++.|.|+++++
T Consensus 18 ~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHcccch
Confidence 333455777777766544
No 319
>PRK11874 petL cytochrome b6-f complex subunit PetL; Reviewed
Probab=20.53 E-value=44 Score=20.76 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=9.9
Q ss_pred CcchhhhhhcccccccchhhHHHH
Q 008950 1 MGFLSSVLGVLGFGFIGLPLGLLV 24 (548)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~ 24 (548)
||.+.|+ ++++.+ .|..+|+..
T Consensus 1 mgvv~y~-~~l~~~-~g~A~gl~f 22 (30)
T PRK11874 1 MGIVFFL-GYLGVF-TGIALGLYF 22 (30)
T ss_pred CchHHHH-HHHHHH-HHHHHHHHH
Confidence 4555443 344444 444444433
No 320
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=20.13 E-value=28 Score=37.78 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred CCCcEEEEEEcCcccceeeeeeecCCCCCeeeceEEEEEecCC-CCEEEEEEEEcCCCCCCC
Q 008950 284 TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWDKVGGHD 344 (548)
Q Consensus 284 ~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d~~~~dd 344 (548)
+.++++..+++.+.+ +|+....+.+|.|||. .+++.+.+ ...|...+-+++...-+|
T Consensus 304 ~~~~~~itsf~~~~f---rt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTF---RTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCELDLND 361 (975)
T ss_pred CCCchheeecchhhh---hhhhhccccccccccc-ccccccchhhHHHhhhccccccccccc
Done!