BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008951
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VNY|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum
pdb|3VNZ|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum In Complex With D-Glucuronic
Acid
pdb|3VO0|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum Covalent-Bonded With
2-Deoxy-2-Fluoro-D-Glucuronic Acid
Length = 488
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 104/258 (40%), Gaps = 33/258 (12%)
Query: 153 DELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWEL 212
+ L+ F K+G K+++GLN G+ + A D +++ T+ + + ++L
Sbjct: 122 NNLSEFLDKTGWKLIYGLNL-------GKGTPENAADEA---AYVMETIGAD-RLLAFQL 170
Query: 213 GNE---LCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEF 269
GNE NG+ R A+ +A + I V + P P ++ KW F
Sbjct: 171 GNEPDLFYRNGI--RPASYDFAAYAGDWQRFFTAIRKRVPNAPFA-GPDTAYNTKWLVPF 227
Query: 270 LDKSGQSLDVATHHIYNLGPGVDQHL-VEKILDP-LYLDREVDTFSQLENTLKSSATSAV 327
DK + + H Y GP D + +E+++ P L E Q+E + T
Sbjct: 228 ADKFKHDVKFISSHYYAEGPPTDPSMTIERLMKPNPRLLGETAGLKQVE-----ADTGLP 282
Query: 328 AWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYGLLNTTT- 386
+ E+ Y G V++ F + W D + AA + + GG YG
Sbjct: 283 FRLTETNSCYQGGKQGVSDTFAAALWAGDLMYQQAAAGSTGI---NFHGGGYGWYTPVAG 339
Query: 387 -----FVPNPDYYSALLW 399
F+ P+YY LL+
Sbjct: 340 TPEDGFIARPEYYGMLLF 357
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 425 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 461
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 149 SRESRWLPSLLSNIENKTVINAALGFDSYLVXRHGNR 185
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 425 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 461
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 441 SRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNR 477
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 425 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 461
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 442 SRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNR 478
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 425 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 461
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 442 SRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNR 478
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 425 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 461
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 441 SRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNR 477
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 425 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 461
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 149 SRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNR 185
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 425 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHK 461
+++S+ L LL N++N T ++A++ F+ L RH ++
Sbjct: 153 SRESRWLPSLLSNIENKTVINAALGFDSYLVMRHGNR 189
>pdb|2Y2W|A Chain A, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|B Chain B, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|C Chain C, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|D Chain D, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|E Chain E, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum.
pdb|2Y2W|F Chain F, Elucidation Of The Substrate Specificity And Protein
Structure Of Abfb, A Family 51
Alpha-L-Arabinofuranosidase From Bifidobacterium Longum
Length = 574
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 10/167 (5%)
Query: 153 DELNAFFKKSGAKIVFGLNALT---GRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHG 209
D+ + +K+G +I+ +N T ++ V GA A+ ++ +++ I
Sbjct: 150 DDFYRWSQKAGTEIMLAVNMGTRGLKAALDELEYVNGAPGTAWADQRVANGIEEPMDIKM 209
Query: 210 WELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLII--APGGFFD--AKW 265
W +GNE+ G ++ +YA + + ++ +G++ L+ + G + W
Sbjct: 210 WCIGNEMDGPWQVGHMSPEEYAGAVDKVAHAMKLAESGLE---LVACGSSGAYMPTFGTW 266
Query: 266 FKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTF 312
K L K+ ++LD + H Y G + D L ++ F
Sbjct: 267 EKTVLTKAYENLDFVSCHAYYFDRGHKTRAAASMQDFLASSEDMTKF 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,727,522
Number of Sequences: 62578
Number of extensions: 636723
Number of successful extensions: 1384
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 16
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)