Query 008951
Match_columns 547
No_of_seqs 200 out of 550
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 18:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03662 Glyco_hydro_79n: Glyc 100.0 9.4E-79 2E-83 611.7 -0.2 317 43-359 2-319 (319)
2 COG3534 AbfA Alpha-L-arabinofu 100.0 2.2E-46 4.7E-51 380.3 27.3 437 43-539 3-499 (501)
3 PF01229 Glyco_hydro_39: Glyco 99.6 1E-13 2.2E-18 151.1 19.1 314 93-439 42-391 (486)
4 smart00813 Alpha-L-AF_C Alpha- 99.0 1.7E-09 3.7E-14 103.4 12.0 116 387-532 64-189 (189)
5 PF11790 Glyco_hydro_cc: Glyco 98.8 3.3E-08 7.2E-13 98.0 12.2 106 204-337 63-177 (239)
6 PF06964 Alpha-L-AF_C: Alpha-L 98.7 1.3E-07 2.8E-12 89.5 10.6 149 346-532 18-177 (177)
7 PF00150 Cellulase: Cellulase 98.4 7.3E-06 1.6E-10 82.5 16.9 218 92-340 22-251 (281)
8 PF02055 Glyco_hydro_30: O-Gly 98.4 3.3E-05 7.2E-10 84.2 20.4 234 193-452 207-473 (496)
9 PF12891 Glyco_hydro_44: Glyco 98.1 9.4E-06 2E-10 79.0 9.0 93 191-287 104-237 (239)
10 PF07745 Glyco_hydro_53: Glyco 98.1 0.00012 2.6E-09 75.7 17.3 207 88-338 21-242 (332)
11 COG5520 O-Glycosyl hydrolase [ 98.1 0.00031 6.8E-09 71.2 18.7 213 195-442 157-375 (433)
12 PF12876 Cellulase-like: Sugar 97.8 6E-05 1.3E-09 62.8 6.2 73 205-285 9-88 (88)
13 PF14587 Glyco_hydr_30_2: O-Gl 97.6 0.0018 4E-08 67.5 15.0 254 44-337 2-312 (384)
14 smart00633 Glyco_10 Glycosyl h 97.4 0.013 2.8E-07 58.7 18.4 214 146-395 12-253 (254)
15 COG3867 Arabinogalactan endo-1 97.1 0.061 1.3E-06 53.8 18.9 215 88-338 60-288 (403)
16 COG3664 XynB Beta-xylosidase [ 96.9 0.0096 2.1E-07 62.0 11.5 180 208-409 106-300 (428)
17 PRK10150 beta-D-glucuronidase; 96.9 0.12 2.5E-06 58.5 21.2 66 207-287 409-474 (604)
18 PF02836 Glyco_hydro_2_C: Glyc 95.1 0.49 1.1E-05 48.4 14.4 82 153-247 62-151 (298)
19 PF00332 Glyco_hydro_17: Glyco 90.5 2.5 5.3E-05 43.7 11.0 216 92-363 14-262 (310)
20 PF03198 Glyco_hydro_72: Gluca 88.7 14 0.0003 37.9 14.5 194 44-288 9-217 (314)
21 COG5309 Exo-beta-1,3-glucanase 88.3 11 0.00023 37.8 12.8 150 154-339 91-245 (305)
22 PF00331 Glyco_hydro_10: Glyco 85.6 9.8 0.00021 39.4 11.9 219 148-397 57-317 (320)
23 KOG2566 Beta-glucocerebrosidas 84.5 48 0.001 35.0 15.6 61 387-449 432-494 (518)
24 PRK09525 lacZ beta-D-galactosi 76.1 36 0.00078 41.1 13.6 81 153-247 397-482 (1027)
25 PF02449 Glyco_hydro_42: Beta- 72.5 17 0.00036 38.4 8.8 55 97-173 16-70 (374)
26 TIGR03356 BGL beta-galactosida 72.2 8.3 0.00018 41.7 6.4 102 94-218 58-164 (427)
27 KOG4701 Chitinase [Cell wall/m 68.0 1.4E+02 0.003 31.5 13.5 43 150-200 90-132 (568)
28 PF14488 DUF4434: Domain of un 62.8 84 0.0018 29.2 10.3 89 151-257 66-161 (166)
29 PF02806 Alpha-amylase_C: Alph 57.1 13 0.00028 30.7 3.5 15 524-538 79-93 (95)
30 PRK10340 ebgA cryptic beta-D-g 52.0 65 0.0014 39.0 9.4 82 153-247 381-469 (1021)
31 COG4130 Predicted sugar epimer 48.9 2.7E+02 0.0058 27.3 13.9 138 89-275 15-165 (272)
32 PRK15014 6-phospho-beta-glucos 48.2 37 0.0008 37.3 6.1 104 92-217 71-180 (477)
33 PF02449 Glyco_hydro_42: Beta- 44.5 1.8E+02 0.0039 30.6 10.6 75 318-397 281-365 (374)
34 PF02057 Glyco_hydro_59: Glyco 44.0 5.5E+02 0.012 29.5 18.7 182 201-435 168-368 (669)
35 PF10566 Glyco_hydro_97: Glyco 37.8 68 0.0015 32.5 5.7 128 146-283 28-156 (273)
36 PF01522 Polysacc_deac_1: Poly 37.3 2.3E+02 0.005 23.8 8.5 90 149-260 17-106 (123)
37 TIGR03006 pepcterm_polyde poly 37.2 4.4E+02 0.0096 26.4 11.8 102 152-276 30-134 (265)
38 PRK09589 celA 6-phospho-beta-g 37.1 60 0.0013 35.7 5.6 106 92-218 69-179 (476)
39 PRK09852 cryptic 6-phospho-bet 37.0 63 0.0014 35.5 5.7 105 93-218 74-183 (474)
40 PF01870 Hjc: Archaeal hollida 31.8 1.2E+02 0.0026 25.1 5.3 71 94-172 4-76 (88)
41 cd02871 GH18_chitinase_D-like 31.3 5.6E+02 0.012 26.2 11.5 23 149-171 59-81 (312)
42 PLN02998 beta-glucosidase 30.4 78 0.0017 35.0 5.1 104 92-218 84-193 (497)
43 PRK10984 DNA-binding transcrip 29.2 53 0.0012 29.1 2.9 31 90-121 6-36 (127)
44 PLN02849 beta-glucosidase 28.5 1.3E+02 0.0028 33.3 6.5 102 94-218 83-190 (503)
45 COG3250 LacZ Beta-galactosidas 27.4 1.7E+02 0.0038 34.4 7.4 59 153-217 347-408 (808)
46 PF14488 DUF4434: Domain of un 26.1 1.5E+02 0.0033 27.5 5.6 67 146-213 16-86 (166)
47 PF07417 Crl: Transcriptional 25.7 49 0.0011 29.2 2.0 30 91-121 5-34 (125)
48 COG2723 BglB Beta-glucosidase/ 23.8 1.7E+02 0.0038 31.8 6.2 103 96-218 64-171 (460)
49 PF02156 Glyco_hydro_26: Glyco 23.7 1.7E+02 0.0036 30.3 5.9 77 201-287 147-232 (311)
50 PRK09593 arb 6-phospho-beta-gl 23.6 1.9E+02 0.004 31.9 6.5 106 92-218 75-185 (478)
51 PRK13511 6-phospho-beta-galact 23.4 1.5E+02 0.0033 32.4 5.8 103 92-218 56-163 (469)
52 PF00232 Glyco_hydro_1: Glycos 23.0 1.4E+02 0.003 32.6 5.4 100 94-218 62-169 (455)
53 COG3693 XynA Beta-1,4-xylanase 22.9 8.8E+02 0.019 25.3 17.3 91 152-248 84-187 (345)
54 PF11216 DUF3012: Protein of u 22.3 72 0.0016 21.2 1.8 18 184-201 14-31 (32)
55 TIGR02764 spore_ybaN_pdaB poly 21.8 6.5E+02 0.014 23.3 11.6 104 153-282 22-126 (191)
56 PRK14706 glycogen branching en 21.0 4.3E+02 0.0094 30.2 9.0 25 148-172 215-239 (639)
57 smart00632 Aamy_C Aamy_C domai 20.3 4.5E+02 0.0097 20.9 8.6 19 429-448 16-34 (81)
No 1
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=100.00 E-value=9.4e-79 Score=611.74 Aligned_cols=317 Identities=55% Similarity=1.053 Sum_probs=156.3
Q ss_pred eeEEEecCCCcccccCCceeEEEcccCCCCCCCCCCccccCcccCCCCCCcHHHHHHHHhcCCCeEecCCcccceeeeec
Q 008951 43 GGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDT 122 (547)
Q Consensus 43 ~~~v~I~~~~~~~~i~~~f~g~~ie~w~~~~~~y~g~~~~~~~~~~~~l~~~~l~~l~k~l~p~~LR~GG~~~D~~~~~~ 122 (547)
.++|.|+.+.+++++|++|+|++|||||++||+|++|+||++||+|+||.|+.|++++|+|+|.+||+||++||+.+|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~f~catldwwp~~kc~y~~~~w~~as~~nlDL~n~~L~~a~~al~P~~iRvGGslqD~v~Y~~ 81 (319)
T PF03662_consen 2 DGTVVVDGSTAIATTDENFVCATLDWWPPSKCDYGQCSWGNASILNLDLSNPILINAAKALSPLYIRVGGSLQDQVIYDT 81 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEeecCCCCccCCCCCCCCCCChHHHHHHHHHHHh
Q 008951 123 EDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVK 202 (547)
Q Consensus 123 ~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~v~y~~~ 202 (547)
+...++|.|+.++++..|||+++|+++++||++++||+++|+++|||||++.|++...++.+.|+|+++||+++++|+.+
T Consensus 82 ~~~~~~c~~~~~~~~~~~~fs~~clt~~rwd~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~s 161 (319)
T PF03662_consen 82 GDNKQPCSPFVKNASGLFGFSNGCLTMSRWDELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTAS 161 (319)
T ss_dssp ------------------------------HHHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEES
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHH
Confidence 98888999998888999999999999999999999999999999999999998754444456799999999999999999
Q ss_pred cCcccceeeeecccCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCCeEEccCCCCChhhHHHHHHhcCCC-CCeEE
Q 008951 203 KNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQS-LDVAT 281 (547)
Q Consensus 203 ~g~~v~~wElGNE~~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP~~~~~~~w~~~~l~~~~~~-id~vs 281 (547)
+||+|++|||||||++++.+..++++||++||++++++|+++|++...+|+++||+++++.+|+++||++.++. ||+||
T Consensus 162 kgy~I~~WELGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~vT 241 (319)
T PF03662_consen 162 KGYNIDSWELGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPGVVDAVT 241 (319)
T ss_dssp S-GGG--------HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT--SEEE
T ss_pred cCCCccccccccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCCccCEEE
Confidence 99999999999999998888999999999999999999999998877889999999988999999999999985 99999
Q ss_pred EEeecCCCCCChhhhhhhcChhhhhHHHHHHHHHHHHHHhcCCCCcEEEeccccCcCCCCCCcchHHHHHHHHHHHHh
Q 008951 282 HHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLG 359 (547)
Q Consensus 282 ~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vsdtf~aalw~lD~lg 359 (547)
||+|+.++|.|+.+++++++|.+|+++..+++.+++++++++|++++|+|||+++|++|++++||||+++|||||+||
T Consensus 242 ~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~FwwLDqLG 319 (319)
T PF03662_consen 242 WHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFWWLDQLG 319 (319)
T ss_dssp EEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHHHHHHH-
T ss_pred EEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHHHHHhhC
Confidence 999999888888888999999999999999999999999999999999999999999999999999999999999997
No 2
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=380.33 Aligned_cols=437 Identities=14% Similarity=0.187 Sum_probs=315.8
Q ss_pred eeEEEecCCCcccccCCceeEEEcccCCCCCCCCCCccccCcccCCCCCCcHHHHHHHHhcCCCeEe-cCCcccceeeee
Q 008951 43 GGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIR-LGGTLQDKVIYD 121 (547)
Q Consensus 43 ~~~v~I~~~~~~~~i~~~f~g~~ie~w~~~~~~y~g~~~~~~~~~~~~l~~~~l~~l~k~l~p~~LR-~GG~~~D~~~~~ 121 (547)
..+++|+++..++.||++++|+++|+ .++|+|+|++.+++.+++.+..+++++.++|+|.+|+|| +|||++|.|+|.
T Consensus 3 ~a~~~v~~d~~ig~I~k~iYG~F~EH--lGr~vY~Giyepd~p~~d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~We 80 (501)
T COG3534 3 KARAVVDTDYTIGKIDKRIYGHFIEH--LGRAVYEGIYEPDSPIADERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWE 80 (501)
T ss_pred ccceeechhhccCcchhhhhhHHHHh--hccceeeeeecCCCCCcchhhhHHHHHHHHHhcCCceeecCCcccccccccc
Confidence 45788999999999999999999995 789999999999999999999999999999999999999 599999999999
Q ss_pred cCCCCCccCcccc------CCCCccCccccccChhhHHHHHHHHhhcCCEEEEEeecCCCCccCCCCCCCCCCChHHHHH
Q 008951 122 TEDNRQPCKQFVK------NSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKGAWDYTNAES 195 (547)
Q Consensus 122 ~~~~~~~~~p~~~------~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~ 195 (547)
++++|.+.||.+. .|++.||+ +||++||+.+|+++++.+|++++ ..++|++
T Consensus 81 DGIGP~e~Rp~rldlaW~t~EtN~~Gt----------~EF~~~~e~iGaep~~avN~Gsr-------------gvd~ar~ 137 (501)
T COG3534 81 DGIGPREERPRRLDLAWGTTETNEFGT----------HEFMDWCELIGAEPYIAVNLGSR-------------GVDEARN 137 (501)
T ss_pred cCcCchhhCchhhcccccccccccccH----------HHHHHHHHHhCCceEEEEecCCc-------------cHHHHHH
Confidence 9999988888654 48899998 99999999999999999999987 5899999
Q ss_pred HHHHHH----------------hcCcccceeeeecccCC-CCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCCeEEccC
Q 008951 196 FISYTV----------------KKNYSIHGWELGNELCG-NGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPG 258 (547)
Q Consensus 196 ~v~y~~----------------~~g~~v~~wElGNE~~~-~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP~ 258 (547)
||+||+ +++++|++|+||||.|| +++|. .++.+|++-..++++++|=++|++ +..++|.+
T Consensus 138 ~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~-~~a~EY~~~A~e~~k~~k~~d~t~--e~~v~g~a 214 (501)
T COG3534 138 WVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGH-KTAPEYGRLANEYRKYMKYFDPTI--ENVVCGSA 214 (501)
T ss_pred HHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCccccc-ccCHHHHHHHHHHHHHHhhcCccc--cceEEeec
Confidence 999983 37889999999999998 56775 567788888888888888777775 45566644
Q ss_pred C---CCChhhHHHHHHhcCCCCCeEEEEeecCCCCCCh-hhhhhhcC-hhhhhHHHHHHHHHHHHHHhcCCC--CcEEEe
Q 008951 259 G---FFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQ-HLVEKILD-PLYLDREVDTFSQLENTLKSSATS--AVAWVG 331 (547)
Q Consensus 259 ~---~~~~~w~~~~l~~~~~~id~vs~H~Y~~~~g~~~-~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~--~p~wl~ 331 (547)
+ ..++.|.+.+|+++.+.+|++|+|+|..+...+. .....-+. ..+++.++..+..++ +++.+. ..+-++
T Consensus 215 ~~~n~~~~~W~~~vl~~~~e~vD~ISlH~Y~Gn~~~~t~ny~~~~~~~~~~i~~l~~~~d~Vk---~k~r~kk~v~l~fD 291 (501)
T COG3534 215 NGANPTDPNWEAVVLEEAYERVDYISLHYYKGNATDDTPNYWAKSLKLDRYIDDLIKKIDYVK---AKKRSKKRVGLSFD 291 (501)
T ss_pred CCCCCCchHHHHHHHHHHhhhcCeEEEEEecCccccCcHHHHHHHhhhhHHHHHHHHHHHHHH---hccccccceeEEEe
Confidence 3 2578999999999998999999999975432221 11111111 113333333333322 344443 446789
Q ss_pred ccccCcCCCC------C-----C-c--chHHHHHHHHHHHHhHHhhcCCceeeee--cccCCccc-cccC-CCCCCCcch
Q 008951 332 ESGGAYNSGH------N-----L-V--TNAFVFSFWYLDQLGMAAAHDTKTYCRQ--SLIGGNYG-LLNT-TTFVPNPDY 393 (547)
Q Consensus 332 Etns~~~~G~------~-----~-v--sdtf~aalw~lD~lg~aA~~g~~v~~~q--~l~gg~Y~-l~~~-~~~~p~P~Y 393 (547)
|||.+|..-. + + + -.+|-.|+...=.+..+.++.-.|.+-+ .++.---. +... ++....|.|
T Consensus 292 EWnvWy~~~~~d~~~~~w~~~p~~Le~~ytl~Dal~~g~~l~~f~k~sdrV~iAniAQlVNvi~ai~~ekgg~~~~~~~y 371 (501)
T COG3534 292 EWNVWYHVRKEDLDRIPWGTAPGLLEQIYTLEDALFAGSLLNIFHKHSDRVRIANIAQLVNVLAAIMTEKGGPAWLTPIY 371 (501)
T ss_pred cccceeecchhhhccccCCCCCccccccchHHHHHHHHHHHHHHHhhcceeehhHHHHHHHHhhheeecCCCcceeeehh
Confidence 9999886411 1 0 0 1223333332223444444433222110 11100000 1111 235578999
Q ss_pred HHHHHHHHHhCCceEEeeecCC----------cceEEEEEEEeCCCcEEEEEEeCCCCCeEEEEEEecCcccccccccch
Q 008951 394 YSALLWHRLMGRNALSTSFSGT----------KKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHKSL 463 (547)
Q Consensus 394 y~~ll~~~l~G~~vl~~~~~~~----------~~l~~YA~~~~~~g~v~l~lIN~~~~~~~~v~i~~~~~~~~~~~~~~~ 463 (547)
|++.+++.+.+...|.+.++++ +.|.+.|++....|.|++.++|.+.+++..++|.+.|+
T Consensus 372 ~~~~~~~~~g~~~~l~~~v~~p~yd~~~~~~vp~ld~sas~~~~~~~l~i~vvN~~~~d~~~~~i~l~G~---------- 441 (501)
T COG3534 372 YPFQMASVHGRGTALKVAVDSPTYDCELAEDVPYLDASASYDEEGGELTIFVVNRALEDALKLNISLNGL---------- 441 (501)
T ss_pred hhhhheeeccCceEEEEEeccCceeccccccCcceeeeeeecccCCeEEEEEEeccccccccceEEeccc----------
Confidence 9999999999888888877542 35777777765458999999999999988999999886
Q ss_pred hhhhhcccCCCCCCceeEEEEEecCCCCcccceEEeCCcccccCCCCCCCCCCceecCC-CCceEEcCceEEEEEec
Q 008951 464 KMKIIKLPQASVGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRVKS-TQPVSVGPFSIVFVHMP 539 (547)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~y~Lt~~~~~l~s~~v~lNG~~l~~~~~~~~p~l~~~~~~~-~~~~~lpp~Si~f~vl~ 539 (547)
...+.++.++||++ ++.+.+.+--..-+. +-+-++..++. +..+.+||+|+.++.|.
T Consensus 442 -----------~~a~~~~~~~lt~~--~~~a~Nt~d~p~~V~------p~~~~~~~vs~~~l~~~~~~~S~~virl~ 499 (501)
T COG3534 442 -----------KKAKSAEHQVLTGD--DLNATNTFDAPENVV------PVPGKGATVSKNELTLDLPPLSVSVIRLK 499 (501)
T ss_pred -----------cccceeeEEEEecC--ccccccCCCCCCcee------cccCCCccccCCceeEecCCceEEEEEEe
Confidence 12367899999988 777777662111111 11222233443 56789999999999984
No 3
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.56 E-value=1e-13 Score=151.12 Aligned_cols=314 Identities=15% Similarity=0.190 Sum_probs=164.1
Q ss_pred cHHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEeec
Q 008951 93 SNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLNA 172 (547)
Q Consensus 93 ~~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN~ 172 (547)
+..|..+.+.+|.-+||+=|-+.|.+.-.... +++.. ..+.-+..|++++|..+.|.+|++-|.+
T Consensus 42 q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~----------~~~~~-----~~Ynf~~lD~i~D~l~~~g~~P~vel~f 106 (486)
T PF01229_consen 42 QEQLRELQEELGFRYVRFHGLFSDDMMVYSES----------DEDGI-----PPYNFTYLDQILDFLLENGLKPFVELGF 106 (486)
T ss_dssp HHHHHHHHCCS--SEEEES-TTSTTTT-EEEE----------ETTEE-----EEE--HHHHHHHHHHHHCT-EEEEEE-S
T ss_pred HHHHHHHHhccCceEEEEEeeccCchhhcccc----------ccCCC-----CcCChHHHHHHHHHHHHcCCEEEEEEEe
Confidence 35566667778899999999987765322110 00100 0134467899999999999999998875
Q ss_pred CCCCccCCCC-----CCC----CCCChHHHHHHH----HHHH-hcCc-ccc--eeeeecccCCCCCCCCCCHHHHHHHHH
Q 008951 173 LTGRSIQNDG-----SVK----GAWDYTNAESFI----SYTV-KKNY-SIH--GWELGNELCGNGVGTRVAAAQYATDTI 235 (547)
Q Consensus 173 ~~~~~~~~~~-----~~~----g~W~~~~A~~~v----~y~~-~~g~-~v~--~wElGNE~~~~~~~~~~t~~~Ya~d~~ 235 (547)
.... .+.+ .+. .+-+.+.-.+++ +... ..|. .|. +|||.||||+......-+.++|.+-|+
T Consensus 107 ~p~~--~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~ 184 (486)
T PF01229_consen 107 MPMA--LASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYD 184 (486)
T ss_dssp B-GG--GBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHH
T ss_pred chhh--hcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHH
Confidence 3211 0100 011 111223323333 2221 2221 133 679999999854333346789999999
Q ss_pred HHHHHHHHHccCCCCCCeEEccCCC-CChhhHHHHHHhc---CCCCCeEEEEeecCCCCCCh-hhhhhhcChhhhhHHHH
Q 008951 236 SLRNVVQKIYTGVDSKPLIIAPGGF-FDAKWFKEFLDKS---GQSLDVATHHIYNLGPGVDQ-HLVEKILDPLYLDREVD 310 (547)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~vgP~~~-~~~~w~~~~l~~~---~~~id~vs~H~Y~~~~g~~~-~~~~~~l~~~~l~~~~~ 310 (547)
..+++||+++|+ .++.||+.. ....|.++|++-+ +..+|++|+|.|+.+.+.+. ......+. .......
T Consensus 185 ~~~~~iK~~~p~----~~vGGp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~--~~~~~~~ 258 (486)
T PF01229_consen 185 ATARAIKAVDPE----LKVGGPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIE--DSRRLFP 258 (486)
T ss_dssp HHHHHHHHH-TT----SEEEEEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB----HHHHHH
T ss_pred HHHHHHHHhCCC----CcccCccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhHHhhhh--hHHHHHH
Confidence 999999999876 578999432 2347888887644 34599999999986432111 00011111 1222334
Q ss_pred HHHHHHHHHH-hcCCCCcEEEeccccCcCCCCCCcchHHHHHHHHHHHHhHHhhcCCceee-------------eecccC
Q 008951 311 TFSQLENTLK-SSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYC-------------RQSLIG 376 (547)
Q Consensus 311 ~~~~~~~~~~-~~~~~~p~wl~Etns~~~~G~~~vsdtf~aalw~lD~lg~aA~~g~~v~~-------------~q~l~g 376 (547)
.+..++++++ +..|.+|+.++|+|+... ....+.|+...|-..+..+.-.....++.+. ....+.
T Consensus 259 ~~~~~~~~~~~e~~p~~~~~~tE~n~~~~-~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~Fee~~~~~~pf~ 337 (486)
T PF01229_consen 259 ELKETRPIINDEADPNLPLYITEWNASIS-PRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRFEENGTPRKPFH 337 (486)
T ss_dssp HHHHHHHHHHTSSSTT--EEEEEEES-SS-TT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS---TTSS-SSSSS
T ss_pred HHHHHHHHHhhccCCCCceeecccccccC-CCcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhhhccCCCCCcee
Confidence 4555544444 456889999999998773 4455667654443344432221111122211 112234
Q ss_pred CccccccCCCCCCCcchHHHHHHHHHhCCceEEeeecCCcceEEEEEEEeCCCcEEEEEEeCC
Q 008951 377 GNYGLLNTTTFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHCAKQSKGLVLLLINLD 439 (547)
Q Consensus 377 g~Y~l~~~~~~~p~P~Yy~~ll~~~l~G~~vl~~~~~~~~~l~~YA~~~~~~g~v~l~lIN~~ 439 (547)
|.+||+... ..+.|.||++.+.+++ |.+++.... ..+ ...++++.+.|++-|..
T Consensus 338 ggfGLlt~~-gI~KPa~~A~~~L~~l-g~~~~~~~~---~~~----vt~~~~~~~~il~~n~~ 391 (486)
T PF01229_consen 338 GGFGLLTKL-GIPKPAYYAFQLLNKL-GDRLVAKGD---HYI----VTSKDDGSVQILVWNHN 391 (486)
T ss_dssp S-S-SEECC-CEE-HHHHHHHHHTT---SEEEEEET---TEE----EEE-TTS-EEEEEEE--
T ss_pred cchhhhhcc-CCCchHHHHHHHHHhh-CceeEecCC---Cce----eEEcCCCeEEEEEecCc
Confidence 668898777 6799999999999998 666554322 222 23445688999999963
No 4
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=99.04 E-value=1.7e-09 Score=103.42 Aligned_cols=116 Identities=20% Similarity=0.258 Sum_probs=82.6
Q ss_pred CCCCcchHHHHHHHHHhCCceEEeeecCC---------cceEEEEEEEeCCCcEEEEEEeCCCCCeEEEEEEecCccccc
Q 008951 387 FVPNPDYYSALLWHRLMGRNALSTSFSGT---------KKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSR 457 (547)
Q Consensus 387 ~~p~P~Yy~~ll~~~l~G~~vl~~~~~~~---------~~l~~YA~~~~~~g~v~l~lIN~~~~~~~~v~i~~~~~~~~~ 457 (547)
...+|.||++.||++++|.+++++.++++ +.|.+.|.+..+++.++|.++|.+.++++.++|.+.|+
T Consensus 64 ~~~t~~Yyv~~lfs~~~g~~~l~~~v~~~~~~~~~~~~~~ld~sA~~~~~~~~~~v~vvN~~~~~~~~~~l~l~g~---- 139 (189)
T smart00813 64 AWRTTTYYVFQLFSKHQGGTVLPVTISSPTYDGEDSDVPALDASASKDEDGGSLTVKVVNRSPEEAVTVTISLRGL---- 139 (189)
T ss_pred EEECCcCHHHHHhhhhCCceEEEEEeeCCccccCcccCCcEEEEEEEeCCCCEEEEEEEeCCCCcCEEEEEEecCC----
Confidence 56789999999999999999999887543 45677776654345899999999988778899988875
Q ss_pred ccccchhhhhhcccCCCCCCceeEEEEEecCCCCcccceEEeCCcccccCCCCCCCCCCceecC-CCCceEEcCce
Q 008951 458 HKHKSLKMKIIKLPQASVGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRVK-STQPVSVGPFS 532 (547)
Q Consensus 458 ~~~~~~~~~~~~l~~~~~~~~~~~~y~Lt~~~~~l~s~~v~lNG~~l~~~~~~~~p~l~~~~~~-~~~~~~lpp~S 532 (547)
..+..+.++|+++ ++.+.+.+-|+..+.. .+....... ....++|||+|
T Consensus 140 ------------------~~~~~~~~~l~~~--~~~a~Nt~~~p~~V~p------~~~~~~~~~~~~~~~~lp~~S 189 (189)
T smart00813 140 ------------------KAKSAEGTVLTSP--DLNAANTFEDPNKVVP------VTSTLAAVEGGTLTVTLPPHS 189 (189)
T ss_pred ------------------ccceEEEEEEeCC--CCccccCCCCCCeeec------cccCCceeeCCEEEEEeCCCC
Confidence 1235688899977 7788777766544331 111111122 22468999987
No 5
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.82 E-value=3.3e-08 Score=98.01 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=76.8
Q ss_pred CcccceeeeecccCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCCeEEccCCCC-------ChhhHHHHHHhcC--
Q 008951 204 NYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFF-------DAKWFKEFLDKSG-- 274 (547)
Q Consensus 204 g~~v~~wElGNE~~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP~~~~-------~~~w~~~~l~~~~-- 274 (547)
+...++++.-||||... ..+++|+++++.|+++.+.++. + +.++++|+... ...|+++|++.+.
T Consensus 63 ~~~~~~ll~fNEPD~~~-qsn~~p~~aa~~w~~~~~~~~~--~----~~~l~sPa~~~~~~~~~~g~~Wl~~F~~~~~~~ 135 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG-QSNMSPEEAAALWKQYMNPLRS--P----GVKLGSPAVAFTNGGTPGGLDWLSQFLSACARG 135 (239)
T ss_pred ccCccceeeecCCCCCC-CCCCCHHHHHHHHHHHHhHhhc--C----CcEEECCeecccCCCCCCccHHHHHHHHhcccC
Confidence 56688999999999843 6789999999999999888873 2 46888998631 2469999999876
Q ss_pred CCCCeEEEEeecCCCCCChhhhhhhcChhhhhHHHHHHHHHHHHHHhcCCCCcEEEeccccCc
Q 008951 275 QSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAY 337 (547)
Q Consensus 275 ~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~ 337 (547)
-.+|++++|.|. .+. .. +. +.+.++.++++ +||||||.+-..
T Consensus 136 ~~~D~iavH~Y~----~~~---~~---------~~---~~i~~~~~~~~--kPIWITEf~~~~ 177 (239)
T PF11790_consen 136 CRVDFIAVHWYG----GDA---DD---------FK---DYIDDLHNRYG--KPIWITEFGCWN 177 (239)
T ss_pred CCccEEEEecCC----cCH---HH---------HH---HHHHHHHHHhC--CCEEEEeecccC
Confidence 469999999992 111 11 11 22333334444 999999998543
No 6
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=98.67 E-value=1.3e-07 Score=89.52 Aligned_cols=149 Identities=15% Similarity=0.214 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHhHHhhcCCcee--eeecccC--Cc----cccc--cCCCCCCCcchHHHHHHHHHhCCceEEeeecCC
Q 008951 346 NAFVFSFWYLDQLGMAAAHDTKTY--CRQSLIG--GN----YGLL--NTTTFVPNPDYYSALLWHRLMGRNALSTSFSGT 415 (547)
Q Consensus 346 dtf~aalw~lD~lg~aA~~g~~v~--~~q~l~g--g~----Y~l~--~~~~~~p~P~Yy~~ll~~~l~G~~vl~~~~~~~ 415 (547)
.++.+||..+-+|..+-+++-.|. +.-.++. +. ..|+ +.+....+|.||+..||+++.|.++|
T Consensus 18 ~~l~~AL~~A~~l~~~eRnsD~V~ma~~A~l~~~~~~~~w~~~li~~~~~~~~~tpsY~v~~lf~~~~g~~~l------- 90 (177)
T PF06964_consen 18 YTLRDALAEAAFLNGFERNSDVVKMACYAPLVNNIGDTQWTPDLITFDGDQVFGTPSYYVQKLFSNHRGDTVL------- 90 (177)
T ss_dssp -BHHHHHHHHHHHHHHHHTTTTEEEEEEE-SBSTTS------SEEEETTSEEEESHHHHHHHHHHHCTTSEEE-------
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEeEEccchhhccccccccccceEEcCCCCEEECchHHHHHHHHhcCCCeEe-------
Confidence 344555555555555555553332 2222332 10 0233 33345689999999999999999999
Q ss_pred cceEEEEEEEeCCCcEEEEEEeCCCCCeEEEEEEecCcccccccccchhhhhhcccCCCCCCceeEEEEEecCCCCcccc
Q 008951 416 KKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHKSLKMKIIKLPQASVGGNEREEYHLTAKDGDLHSQ 495 (547)
Q Consensus 416 ~~l~~YA~~~~~~g~v~l~lIN~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~Lt~~~~~l~s~ 495 (547)
+.+.+.|.+..+++.+.|.++|.+.+ ++.++|++.|+. .....+.+.|+++ ++.+.
T Consensus 91 ~~l~~~As~d~~~~~l~v~vVN~~~~-~~~v~l~l~g~~---------------------~~~~a~~~~Ltg~--~~~a~ 146 (177)
T PF06964_consen 91 PPLDVSASRDEDGGELYVKVVNRSSE-PQTVTLNLQGFS---------------------PAATATVTTLTGD--DPDAE 146 (177)
T ss_dssp ESEEEEEEEETTTTEEEEEEEE-SSS-BEEEEEEETTST---------------------S-EEEEEEEEETS--STT-B
T ss_pred ccEEEEEEEECCCCEEEEEEEECCCC-CEEEEEEEcCCC---------------------CCceEEEEEEECC--Ccccc
Confidence 56777777765455799999999887 578999998851 2357899999987 56776
Q ss_pred eEEeCCcccccCCCCCCCCCCceec-CCCCceEEcCce
Q 008951 496 TMLLNGNILSVNSIGDIPTLEPLRV-KSTQPVSVGPFS 532 (547)
Q Consensus 496 ~v~lNG~~l~~~~~~~~p~l~~~~~-~~~~~~~lpp~S 532 (547)
+.+-|...+. |.-..... .....++|||+|
T Consensus 147 Nt~~~p~~V~-------p~~~~~~~~~~~~~~~lp~~S 177 (177)
T PF06964_consen 147 NTFENPENVV-------PVTSTVSAEGGTFTYTLPPYS 177 (177)
T ss_dssp -CSSSTTSSE-------EEEEEEEEETTEEEEEE-SSE
T ss_pred cCCCCCCEEE-------EEEeeEEecCCEEEEEeCCCC
Confidence 6664544433 22111111 223478999987
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.45 E-value=7.3e-06 Score=82.54 Aligned_cols=218 Identities=18% Similarity=0.163 Sum_probs=112.9
Q ss_pred CcHHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEee
Q 008951 92 NSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLN 171 (547)
Q Consensus 92 ~~~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN 171 (547)
..+.....++++|...||+-=. |..-..+. | +...+ .-...+++++++.|++.|..+|+.+.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~------~~~~~~~~---~-----~~~~~----~~~~~~ld~~v~~a~~~gi~vild~h 83 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVG------WEAYQEPN---P-----GYNYD----ETYLARLDRIVDAAQAYGIYVILDLH 83 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE------STSTSTTS---T-----TTSBT----HHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCC------HHHhcCCC---C-----Ccccc----HHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4566678889999999996322 21111000 0 10000 11135679999999999999999887
Q ss_pred cCCCCccCCCCCCCCCCChHHHHHH----HHHH-Hh--cCcccceeeeecccCCCCCCC---CCCHHHHHHHHHHHHHHH
Q 008951 172 ALTGRSIQNDGSVKGAWDYTNAESF----ISYT-VK--KNYSIHGWELGNELCGNGVGT---RVAAAQYATDTISLRNVV 241 (547)
Q Consensus 172 ~~~~~~~~~~~~~~g~W~~~~A~~~----v~y~-~~--~g~~v~~wElGNE~~~~~~~~---~~t~~~Ya~d~~~~~~~~ 241 (547)
...+-.... ..........++ +++. .. ....+.+|||.|||+...... ..++..|.+-+++..++|
T Consensus 84 ~~~~w~~~~----~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~I 159 (281)
T PF00150_consen 84 NAPGWANGG----DGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAI 159 (281)
T ss_dssp ESTTCSSST----STTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHH
T ss_pred cCccccccc----cccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHH
Confidence 741100000 011122222222 2221 22 223477999999999743222 225678888889999999
Q ss_pred HHHccCCCCCCeEEccCCCCChhhHHHHHHh--cCCCCCeEEEEeecCCCCCChhhhhhhcChhhhhHHHHHHHHHHHHH
Q 008951 242 QKIYTGVDSKPLIIAPGGFFDAKWFKEFLDK--SGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTL 319 (547)
Q Consensus 242 ~~~~~~~~~~~~~vgP~~~~~~~w~~~~l~~--~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 319 (547)
|++.|+ .+.+++.... .......+... .....+++++|.|........ ...............++.....+
T Consensus 160 r~~~~~---~~i~~~~~~~-~~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 232 (281)
T PF00150_consen 160 RAADPN---HLIIVGGGGW-GADPDGAAADNPNDADNNDVYSFHFYDPYDFSDQ---WNPGNWGDASALESSFRAALNWA 232 (281)
T ss_dssp HHTTSS---SEEEEEEHHH-HTBHHHHHHHSTTTTTTSEEEEEEEETTTCHHTT---TSTCSHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCc---ceeecCCCcc-ccccchhhhcCcccccCceeEEeeEeCCCCcCCc---cccccchhhhHHHHHHHHHHHHH
Confidence 998765 3445543211 01111112221 124588999999984210000 00000111111223333333333
Q ss_pred HhcCCCCcEEEeccccCcCCC
Q 008951 320 KSSATSAVAWVGESGGAYNSG 340 (547)
Q Consensus 320 ~~~~~~~p~wl~Etns~~~~G 340 (547)
.+ .++|+|+||++.....+
T Consensus 233 ~~--~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 233 KK--NGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp HH--TTSEEEEEEEESSTTTS
T ss_pred HH--cCCeEEEeCcCCcCCCC
Confidence 32 36899999999875443
No 8
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=98.36 E-value=3.3e-05 Score=84.16 Aligned_cols=234 Identities=15% Similarity=0.194 Sum_probs=127.6
Q ss_pred HHHHHHHH---HhcCcccceeeeecccCCC-----C-CCCCCCHHHHHHHHHH-HHHHHHHHccCCCCCCeEEccCCC--
Q 008951 193 AESFISYT---VKKNYSIHGWELGNELCGN-----G-VGTRVAAAQYATDTIS-LRNVVQKIYTGVDSKPLIIAPGGF-- 260 (547)
Q Consensus 193 A~~~v~y~---~~~g~~v~~wElGNE~~~~-----~-~~~~~t~~~Ya~d~~~-~~~~~~~~~~~~~~~~~~vgP~~~-- 260 (547)
|.-+++|. +++|.+|.+.-+.|||+.. . ....|++++-++=.+. |.-+|++.-.. .+.++++-+..
T Consensus 207 A~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g--~d~kI~~~D~n~~ 284 (496)
T PF02055_consen 207 ADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLG--KDVKILIYDHNRD 284 (496)
T ss_dssp HHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT---TTSEEEEEEEEGG
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCC--CceEEEEEecCCc
Confidence 44455554 4689999999999999841 1 2356888875433332 66777764221 24567664322
Q ss_pred CChhhHHHHHHh--cCCCCCeEEEEeecCCCCCChhhhhhhcChhhhhHHHHHHHHHHHHHHhcCCCCcEEEeccccCcC
Q 008951 261 FDAKWFKEFLDK--SGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYN 338 (547)
Q Consensus 261 ~~~~w~~~~l~~--~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~ 338 (547)
..++|...+|+. +...||.+.+|.|.. ++. +..|++ +.+..|++.+|.||......
T Consensus 285 ~~~~~~~~il~d~~A~~yv~GiA~HwY~g----~~~-------~~~l~~-----------~h~~~P~k~l~~TE~~~g~~ 342 (496)
T PF02055_consen 285 NLPDYADTILNDPEAAKYVDGIAFHWYGG----DPS-------PQALDQ-----------VHNKFPDKFLLFTEACCGSW 342 (496)
T ss_dssp GTTHHHHHHHTSHHHHTTEEEEEEEETTC----S-H-------CHHHHH-----------HHHHSTTSEEEEEEEESS-S
T ss_pred ccchhhhhhhcChhhHhheeEEEEECCCC----Cch-------hhHHHH-----------HHHHCCCcEEEeeccccCCC
Confidence 235788888863 345699999999953 110 111211 12346899999999754321
Q ss_pred C-CCCCcchHHHHHHHHHHHHhHHhhcCCceeeeeccc----CCc-----c----ccccC--CCCCCCcchHHHHHHHHH
Q 008951 339 S-GHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLI----GGN-----Y----GLLNT--TTFVPNPDYYSALLWHRL 402 (547)
Q Consensus 339 ~-G~~~vsdtf~aalw~lD~lg~aA~~g~~v~~~q~l~----gg~-----Y----~l~~~--~~~~p~P~Yy~~ll~~~l 402 (547)
. +.......+..+..+...+...-.++...++.+.+. ||. + ..++. +.+..+|.||.+-=|+++
T Consensus 343 ~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSKF 422 (496)
T PF02055_consen 343 NWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSKF 422 (496)
T ss_dssp TTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHTT
T ss_pred CcccccccccHHHHHHHHHHHHHHHHhhceeeeeeeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhcc
Confidence 1 111111234455555544433334555544444432 321 1 11222 345679999999999999
Q ss_pred h--CCceEEeeecCC-cceEEEEEEEeCCCcEEEEEEeCCCCCeEEEEEEecC
Q 008951 403 M--GRNALSTSFSGT-KKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNG 452 (547)
Q Consensus 403 ~--G~~vl~~~~~~~-~~l~~YA~~~~~~g~v~l~lIN~~~~~~~~v~i~~~~ 452 (547)
+ |...+.++.+.. ..|.+-|.- +.+|.++|+++|...++. .++|.+.+
T Consensus 423 V~PGa~RI~st~~~~~~~l~~vAF~-nPDGs~vvVv~N~~~~~~-~~~v~v~~ 473 (496)
T PF02055_consen 423 VRPGAVRIGSTSSSSDSGLEAVAFL-NPDGSIVVVVLNRGDSDQ-NFSVTVKD 473 (496)
T ss_dssp S-TT-EEEEEEESSSTTTEEEEEEE-ETTSEEEEEEEE-SSS-E-EEEEEEEC
T ss_pred cCCCCEEEEeeccCCCCceeEEEEE-CCCCCEEEEEEcCCCCcc-ceEEEEec
Confidence 8 555565554332 357766654 457999999999987764 55555543
No 9
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=98.14 E-value=9.4e-06 Score=79.02 Aligned_cols=93 Identities=20% Similarity=0.285 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhc------CcccceeeeecccCCC---C---CCCCCCHHHHHHHHHHHHHHHHHHccCCCCCCeEEccC
Q 008951 191 TNAESFISYTVKK------NYSIHGWELGNELCGN---G---VGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPG 258 (547)
Q Consensus 191 ~~A~~~v~y~~~~------g~~v~~wElGNE~~~~---~---~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP~ 258 (547)
.=..+||+|...+ +..|++|.|.|||+++ + .+...+.+++.+.+.+++++||+++|++ +++||.
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a----~v~GP~ 179 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDA----KVFGPV 179 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTS----EEEEEE
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCC----eEeech
Confidence 3467888887543 5679999999999983 2 3778999999999999999999999874 799996
Q ss_pred CC---------CC------------hhhHHHHHH-------hcCCC-CCeEEEEeecC
Q 008951 259 GF---------FD------------AKWFKEFLD-------KSGQS-LDVATHHIYNL 287 (547)
Q Consensus 259 ~~---------~~------------~~w~~~~l~-------~~~~~-id~vs~H~Y~~ 287 (547)
.. .+ ..|+.-||+ ..|.. +|++.+|+||.
T Consensus 180 ~wgw~~y~~~~~d~~~~~d~~~~g~~~fl~wyL~qm~~~~~~~G~RLLDvlDiH~YPq 237 (239)
T PF12891_consen 180 EWGWCGYFSSADDAPGWPDRAAHGNYDFLPWYLDQMKEAEKSTGKRLLDVLDIHYYPQ 237 (239)
T ss_dssp E-SHHHHHHTTTHHTTHHHHHHTTT-SHHHHHHHHHHHHHHHHTS-S-SEEEEEE--S
T ss_pred hhccceeeccCccccccccccccCCcchHHHHHHHHHHhhhhcCceeeeeeeeeecCC
Confidence 32 11 125555554 23544 99999999985
No 10
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.13 E-value=0.00012 Score=75.67 Aligned_cols=207 Identities=16% Similarity=0.160 Sum_probs=110.4
Q ss_pred CCCCCcHHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEE
Q 008951 88 NLDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIV 167 (547)
Q Consensus 88 ~~~l~~~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i 167 (547)
+.+...+++..++|.-|...||+ + +|.+... - +..+.++--++..=+++.|.+++
T Consensus 21 ~~~G~~~d~~~ilk~~G~N~vRl------R-vwv~P~~--------------~----g~~~~~~~~~~akrak~~Gm~vl 75 (332)
T PF07745_consen 21 DENGQEKDLFQILKDHGVNAVRL------R-VWVNPYD--------------G----GYNDLEDVIALAKRAKAAGMKVL 75 (332)
T ss_dssp -TTSSB--HHHHHHHTT--EEEE------E-E-SS-TT--------------T----TTTSHHHHHHHHHHHHHTT-EEE
T ss_pred CCCCCCCCHHHHHHhcCCCeEEE------E-eccCCcc--------------c----ccCCHHHHHHHHHHHHHCCCeEE
Confidence 34566788899999999888875 2 2433110 0 12334455666666778899999
Q ss_pred EEeecCCCCccCCCC-CCCCCCCh---HH-HHHHHHHH-------HhcCcccceeeeecccCC---CCCCCCCCHHHHHH
Q 008951 168 FGLNALTGRSIQNDG-SVKGAWDY---TN-AESFISYT-------VKKNYSIHGWELGNELCG---NGVGTRVAAAQYAT 232 (547)
Q Consensus 168 ~glN~~~~~~~~~~~-~~~g~W~~---~~-A~~~v~y~-------~~~g~~v~~wElGNE~~~---~~~~~~~t~~~Ya~ 232 (547)
+.+-+..-= .++.+ .--..|.. .+ +.++-+|+ +..|...+.++||||.+. +..+..-+.+++++
T Consensus 76 ldfHYSD~W-aDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ 154 (332)
T PF07745_consen 76 LDFHYSDFW-ADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAK 154 (332)
T ss_dssp EEE-SSSS---BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHH
T ss_pred EeecccCCC-CCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHH
Confidence 888764210 00000 01124443 22 22333443 457889999999999884 22344566788888
Q ss_pred HHHHHHHHHHHHccCCCCCCeEEccCCCCChhhHHHHHHhcCCCCCeEEEEeecCCCCCChhhhhhhcChhhhhHHHHHH
Q 008951 233 DTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTF 312 (547)
Q Consensus 233 d~~~~~~~~~~~~~~~~~~~~~vgP~~~~~~~w~~~~l~~~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~ 312 (547)
-+..=.+++|++.|+++...-+..|+......|+-+-|...+...|++.+++||.-.+ .++.+ .
T Consensus 155 ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~-------------~l~~l---~ 218 (332)
T PF07745_consen 155 LLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG-------------TLEDL---K 218 (332)
T ss_dssp HHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST--------------HHHH---H
T ss_pred HHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCcc-------------hHHHH---H
Confidence 8888889999987764211111112211122455555566677799999999986322 12222 2
Q ss_pred HHHHHHHHhcCCCCcEEEeccccCcC
Q 008951 313 SQLENTLKSSATSAVAWVGESGGAYN 338 (547)
Q Consensus 313 ~~~~~~~~~~~~~~p~wl~Etns~~~ 338 (547)
..++.+.+++ +||++|.||+-.+.
T Consensus 219 ~~l~~l~~ry--~K~V~V~Et~yp~t 242 (332)
T PF07745_consen 219 NNLNDLASRY--GKPVMVVETGYPWT 242 (332)
T ss_dssp HHHHHHHHHH--T-EEEEEEE---SB
T ss_pred HHHHHHHHHh--CCeeEEEecccccc
Confidence 3445556677 58999999986554
No 11
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=98.08 E-value=0.00031 Score=71.22 Aligned_cols=213 Identities=11% Similarity=0.068 Sum_probs=116.0
Q ss_pred HHHHHHHhcCcccceeeeecccCCC--CCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCCeEEccCCCC-ChhhHHHHHH
Q 008951 195 SFISYTVKKNYSIHGWELGNELCGN--GVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFF-DAKWFKEFLD 271 (547)
Q Consensus 195 ~~v~y~~~~g~~v~~wElGNE~~~~--~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP~~~~-~~~w~~~~l~ 271 (547)
++|.|.+..|.++++..+=||||.- .-+..|+|+|..+=++++..-+.+ ..+++-|+.+. .++|-+-.|.
T Consensus 157 ~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~-------~~rV~~pes~~~~~~~~dp~ln 229 (433)
T COG5520 157 DFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLASINA-------EMRVIIPESFKDLPNMSDPILN 229 (433)
T ss_pred HHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhhhhhcc-------ccEEecchhccccccccccccc
Confidence 4555567899999999999999972 235679998877555554444322 46788888753 3456555554
Q ss_pred h--cCCCCCeEEEEeecCCCCCChhhhhhhcChhhhhHHHHHHHHHHHHHHhcCCCCcEEEeccccCcCCCCCCcchHHH
Q 008951 272 K--SGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFV 349 (547)
Q Consensus 272 ~--~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vsdtf~ 349 (547)
. +-..||.+.+|.|... .. + -|.. ..+....+|.+|++|.-.-.. .++-.|+
T Consensus 230 Dp~a~a~~~ilg~H~Ygg~--v~-----~--~p~~-------------lak~~~~gKdlwmte~y~~es--d~~s~dr-- 283 (433)
T COG5520 230 DPKALANMDILGTHLYGGQ--VS-----D--QPYP-------------LAKQKPAGKDLWMTECYPPES--DPNSADR-- 283 (433)
T ss_pred CHhHhcccceeEeeecccc--cc-----c--chhh-------------HhhCCCcCCceEEeecccCCC--CCCcchH--
Confidence 2 2235999999999532 11 0 1111 112234589999999643211 1112233
Q ss_pred HHHHHHHHHhHHhhcC-CceeeeecccCCccccccCCCCCCCcchHHHHHHHHHhCCceEEeeecCCcceEEEEEEEeCC
Q 008951 350 FSFWYLDQLGMAAAHD-TKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHCAKQS 428 (547)
Q Consensus 350 aalw~lD~lg~aA~~g-~~v~~~q~l~gg~Y~l~~~~~~~p~P~Yy~~ll~~~l~G~~vl~~~~~~~~~l~~YA~~~~~~ 428 (547)
.++|....+..+...| .+.+.-+.+ -.+|+..-+....- -+=|..--+.+.++..-+.++.+.+++--+|+..-.+.
T Consensus 284 ~~~~~~~hi~~gm~~gg~~ayv~W~i-~~~~~~~~~~gg~~-k~~y~ma~fskf~q~gy~rldat~sp~~nvyvsayvg~ 361 (433)
T COG5520 284 EALHVALHIHIGMTEGGFQAYVWWNI-RLDYGGGPNHGGNS-KRGYCMAHFSKFVQNGYVRLDATKSPYGNVYVSAYVGP 361 (433)
T ss_pred HHHHHHHHHHhhccccCccEEEEEEE-eeccCCCcCCCccc-ccceeEeeeeeeccCCceEEecccCccceEEEEEEecC
Confidence 5667766666655443 454444433 23443332211111 11223333444455552233322233322333222246
Q ss_pred CcEEEEEEeCCCCC
Q 008951 429 KGLVLLLINLDNST 442 (547)
Q Consensus 429 g~v~l~lIN~~~~~ 442 (547)
+.++|+.||++...
T Consensus 362 nkvvivaink~~~~ 375 (433)
T COG5520 362 NKVVIVAINKGTYP 375 (433)
T ss_pred CcEEEEeecccccc
Confidence 89999999997655
No 12
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.76 E-value=6e-05 Score=62.76 Aligned_cols=73 Identities=25% Similarity=0.220 Sum_probs=42.4
Q ss_pred cccceeeeecccCCC-C--C---CCCCCHHHHHHHHHHHHHHHHHHccCCCCCCeEEccCCCCChhhHHHHHHhcC-CCC
Q 008951 205 YSIHGWELGNELCGN-G--V---GTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSG-QSL 277 (547)
Q Consensus 205 ~~v~~wElGNE~~~~-~--~---~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP~~~~~~~w~~~~l~~~~-~~i 277 (547)
.+|.+|||+||+++. . . ......+.|.+-.++..++||+++|+ .|..+|-... +... ++... +.+
T Consensus 9 ~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~---~pvt~g~~~~-~~~~----~~~~~~~~~ 80 (88)
T PF12876_consen 9 PRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPS---QPVTSGFWGG-DWED----LEQLQAENL 80 (88)
T ss_dssp GGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TT---S-EE--B--S--TTH----HHHS--TT-
T ss_pred CCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCC---CcEEeecccC-CHHH----HHHhchhcC
Confidence 358899999994442 1 1 12345688889999999999999887 3555443222 1111 33333 679
Q ss_pred CeEEEEee
Q 008951 278 DVATHHIY 285 (547)
Q Consensus 278 d~vs~H~Y 285 (547)
|++|+|.|
T Consensus 81 DvisfH~Y 88 (88)
T PF12876_consen 81 DVISFHPY 88 (88)
T ss_dssp SSEEB-EE
T ss_pred CEEeeecC
Confidence 99999998
No 13
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.56 E-value=0.0018 Score=67.46 Aligned_cols=254 Identities=17% Similarity=0.189 Sum_probs=107.3
Q ss_pred eEEEecCCCcccccCCceeEEEcccCCCCCCCCCCccccCcccCCCCCCcHHHHHHH-----------HhcCCCeEec--
Q 008951 44 GNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAV-----------KAFSPLKIRL-- 110 (547)
Q Consensus 44 ~~v~I~~~~~~~~i~~~f~g~~ie~w~~~~~~y~g~~~~~~~~~~~~l~~~~l~~l~-----------k~l~p~~LR~-- 110 (547)
.+|+||+.+.-.+|+ =+|.+.-||.. +-|..|.. -.++.+.+++ +.||-.++|+
T Consensus 2 ~~vtId~~~~~Qtie--GfGaS~aW~a~----~~Gk~w~~-------~~r~~iaDlLFS~~~~~~g~p~GlGLSI~RyNI 68 (384)
T PF14587_consen 2 KSVTIDPSTTYQTIE--GFGASDAWWAN----FVGKNWPE-------EKRNQIADLLFSTENDSNGNPKGLGLSIWRYNI 68 (384)
T ss_dssp EEEEEEEEEEEEE----EEEEE-TTTHH----HHHHHS-H-------HHHHHHHHHHH---B-TTS-B-S---S-EEEE-
T ss_pred ceEEEcCCCCceeec--cccHHHhHHHH----HhcccCCH-------HHHHHHHHHhcCCCcccCCCCCCceeeeeeecc
Confidence 368888888888877 45667777642 11211211 1123333332 4577788994
Q ss_pred CCcccceeeeecCCCCCccCcccc-----CCCCccCccccccChhhHHHHHHHHhhcCCEEEEEeecCCCCccCCCCCC-
Q 008951 111 GGTLQDKVIYDTEDNRQPCKQFVK-----NSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLNALTGRSIQNDGSV- 184 (547)
Q Consensus 111 GG~~~D~~~~~~~~~~~~~~p~~~-----~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~- 184 (547)
||..... -+.. ... .+++. .++..+.++. . ...+| |+.-+++-|++.+....-.-.-.=+..+..
T Consensus 69 GgGs~~~--~d~~-~i~--~~~rr~e~f~~~dg~yDW~~-D-~gQrw--fL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~ 139 (384)
T PF14587_consen 69 GGGSAEQ--GDSS-GIR--DPWRRAESFLPADGSYDWDA-D-AGQRW--FLKAAKERGVNIFEAFSNSPPWWMTKNGSAS 139 (384)
T ss_dssp --STTTT--TTSS---S--SSTT----SB-TTS-B-TTS-S-HHHHH--HHHHHHHTT---EEEE-SSS-GGGSSSSSSB
T ss_pred ccCCccc--ccCc-cCC--CcccCCccccCCCCCcCCCC-C-HHHHH--HHHHHHHcCCCeEEEeecCCCHHHhcCCCCC
Confidence 7655433 1111 111 11111 1222222211 1 12344 788899999987765432200000001100
Q ss_pred CC--------CCChH-HHHHH---HHHHHhcCcccceeeeecccCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHccC
Q 008951 185 KG--------AWDYT-NAESF---ISYTVKKNYSIHGWELGNELCGN-----GVGTRVAAAQYATDTISLRNVVQKIYTG 247 (547)
Q Consensus 185 ~g--------~W~~~-~A~~~---v~y~~~~g~~v~~wElGNE~~~~-----~~~~~~t~~~Ya~d~~~~~~~~~~~~~~ 247 (547)
.+ ++..+ -|.-| +++.++.|.++.+.+-=|||+.+ +-|..+++++-++-.+.+++.+++.-
T Consensus 140 g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~G-- 217 (384)
T PF14587_consen 140 GGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRG-- 217 (384)
T ss_dssp -S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT--
T ss_pred CCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC--
Confidence 00 11111 13223 33335689999999999999863 23677899988888888999988762
Q ss_pred CCCCCeEEccCCC-C----C--------hhhHHHHHHhcC-------CC-CCeEEEEeecCCCCCChhhhhhhcChhhhh
Q 008951 248 VDSKPLIIAPGGF-F----D--------AKWFKEFLDKSG-------QS-LDVATHHIYNLGPGVDQHLVEKILDPLYLD 306 (547)
Q Consensus 248 ~~~~~~~vgP~~~-~----~--------~~w~~~~l~~~~-------~~-id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~ 306 (547)
...+|..++.. . . ..-+..|+.... +. -..|+-|.|.... + .+
T Consensus 218 --L~t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~s~~yi~~l~~v~~~i~~HsYwt~~---~-----------~~ 281 (384)
T PF14587_consen 218 --LSTKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPDSSTYIGDLPNVPNIISGHSYWTDS---P-----------WD 281 (384)
T ss_dssp ---S-EEEEEEESSGGGGS---S-TTS---HHHHHHSTTSTT--TT-TTEEEEEEE--TT-SS---S-----------HH
T ss_pred --CCceEEecchhhHHHHhhccCCchhhhhhHHhhcCCCchhhhhccccchhheeecccccCC---C-----------HH
Confidence 23345544321 0 0 122456665332 12 4678889997541 1 22
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEeccccCc
Q 008951 307 REVDTFSQLENTLKSSATSAVAWVGESGGAY 337 (547)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~ 337 (547)
.+.+..+.+.+.++++.|+.++|.+|+..-.
T Consensus 282 ~l~~~R~~~~~~~~~~~~~~~~wqtE~~il~ 312 (384)
T PF14587_consen 282 DLRDIRKQLADKLDKYSPGLKYWQTEYCILG 312 (384)
T ss_dssp HHHHHHHHHHHHHHTTSS--EEEE----S--
T ss_pred HHHHHHHHHHHHHHhhCcCCceeeeeeeecc
Confidence 3344455677778889999999999986643
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.40 E-value=0.013 Score=58.73 Aligned_cols=214 Identities=12% Similarity=0.077 Sum_probs=103.7
Q ss_pred ccChhhHHHHHHHHhhcCCEEEEEeecCCCCccCCCCCCCCCCChHH-HHHHHHHH----HhcCcccceeeeecccCCCC
Q 008951 146 CLPMHRWDELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKGAWDYTN-AESFISYT----VKKNYSIHGWELGNELCGNG 220 (547)
Q Consensus 146 ~~t~~~~d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~~g~W~~~~-A~~~v~y~----~~~g~~v~~wElGNE~~~~~ 220 (547)
.+..+..|+++++|++.|.++-... +.-.. +.++ |.....+.+ ...+.+|. ...+.++.+|++.|||...+
T Consensus 12 ~~n~~~~D~~~~~a~~~gi~v~gH~-l~W~~-~~P~--W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wdV~NE~~~~~ 87 (254)
T smart00633 12 QFNFSGADAIVNFAKENGIKVRGHT-LVWHS-QTPD--WVFNLSKETLLARLENHIKTVVGRYKGKIYAWDVVNEALHDN 87 (254)
T ss_pred ccChHHHHHHHHHHHHCCCEEEEEE-Eeecc-cCCH--hhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEEEeeecccCC
Confidence 3445677999999999999985422 21111 1221 211112222 33455554 23556699999999997532
Q ss_pred ---CCC-CC---CHHHHHHHHHHHHHHHHHHccCCCCCCeEEc------cCCCC-C-hhhHHHHHHhcCCCCCeEEEEee
Q 008951 221 ---VGT-RV---AAAQYATDTISLRNVVQKIYTGVDSKPLIIA------PGGFF-D-AKWFKEFLDKSGQSLDVATHHIY 285 (547)
Q Consensus 221 ---~~~-~~---t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vg------P~~~~-~-~~w~~~~l~~~~~~id~vs~H~Y 285 (547)
... .| -+.+|.+ ...++.++++|+.+ .++. +.... . ..+.+.+. +.+..||.|-++..
T Consensus 88 ~~~~~~~~w~~~~G~~~i~---~af~~ar~~~P~a~---l~~Ndy~~~~~~~k~~~~~~~v~~l~-~~g~~iDgiGlQ~H 160 (254)
T smart00633 88 GSGLRRSVWYQILGEDYIE---KAFRYAREADPDAK---LFYNDYNTEEPNAKRQAIYELVKKLK-AKGVPIDGIGLQSH 160 (254)
T ss_pred CcccccchHHHhcChHHHH---HHHHHHHHhCCCCE---EEEeccCCcCccHHHHHHHHHHHHHH-HCCCccceeeeeee
Confidence 100 11 1124443 33456667777641 2222 10000 0 12333333 34556999987422
Q ss_pred cCCCCCChhhhhhhcChhhhhHHHHHHHHHHHHHHhcCCCCcEEEeccccCcCCCCCCcchHHHHHHHHHHHHhHHhhc-
Q 008951 286 NLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAH- 364 (547)
Q Consensus 286 ~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vsdtf~aalw~lD~lg~aA~~- 364 (547)
... +. + + ++.+...++.+. ..++|+++||+...... +.=..|-++-+.+-.+-++
T Consensus 161 ~~~-~~-~-------~---~~~~~~~l~~~~------~~g~pi~iTE~dv~~~~------~~~~qA~~~~~~l~~~~~~p 216 (254)
T smart00633 161 LSL-GS-P-------N---IAEIRAALDRFA------SLGLEIQITELDISGYP------NPQAQAADYEEVFKACLAHP 216 (254)
T ss_pred ecC-CC-C-------C---HHHHHHHHHHHH------HcCCceEEEEeecCCCC------cHHHHHHHHHHHHHHHHcCC
Confidence 110 11 1 1 111222222221 13799999999875421 1122333445554444433
Q ss_pred CCceeeeecccCC------cc-ccccCCCCCCCcchHH
Q 008951 365 DTKTYCRQSLIGG------NY-GLLNTTTFVPNPDYYS 395 (547)
Q Consensus 365 g~~v~~~q~l~gg------~Y-~l~~~~~~~p~P~Yy~ 395 (547)
++..++-..+..+ +. +|+|.+ +.|+|.|++
T Consensus 217 ~v~gi~~Wg~~d~~~W~~~~~~~L~d~~-~~~kpa~~~ 253 (254)
T smart00633 217 AVTGVTVWGVTDKYSWLDGGAPLLFDAN-YQPKPAYWA 253 (254)
T ss_pred CeeEEEEeCCccCCcccCCCCceeECCC-CCCChhhhc
Confidence 2333333343321 12 577766 889998864
No 15
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.061 Score=53.83 Aligned_cols=215 Identities=17% Similarity=0.145 Sum_probs=118.6
Q ss_pred CCCCCcHHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEE
Q 008951 88 NLDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIV 167 (547)
Q Consensus 88 ~~~l~~~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i 167 (547)
+.+..+++..+.+|+-|..+||+ -+|.+... .+ ++.+|- +.-....--++..=+++.|.+++
T Consensus 60 d~ng~~qD~~~iLK~~GvNyvRl-------RvwndP~d--------sn-gn~ygg--GnnD~~k~ieiakRAk~~GmKVl 121 (403)
T COG3867 60 DTNGVRQDALQILKNHGVNYVRL-------RVWNDPYD--------SN-GNGYGG--GNNDLKKAIEIAKRAKNLGMKVL 121 (403)
T ss_pred ccCChHHHHHHHHHHcCcCeEEE-------EEecCCcc--------CC-CCccCC--CcchHHHHHHHHHHHHhcCcEEE
Confidence 34567788899999999999985 34654211 01 111211 11111112345555667799999
Q ss_pred EEeecCCCCccCCCCCCCCCCChHHH----HHHHHHH-------HhcCcccceeeeecccCC---CCCCCCCCHHHHHHH
Q 008951 168 FGLNALTGRSIQNDGSVKGAWDYTNA----ESFISYT-------VKKNYSIHGWELGNELCG---NGVGTRVAAAQYATD 233 (547)
Q Consensus 168 ~glN~~~~~~~~~~~~~~g~W~~~~A----~~~v~y~-------~~~g~~v~~wElGNE~~~---~~~~~~~t~~~Ya~d 233 (547)
+.+-+..-=.++........|.--+- +++-+|+ ++.|....-.++|||.++ +..|..-+-+..++.
T Consensus 122 ~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L 201 (403)
T COG3867 122 LDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAAL 201 (403)
T ss_pred eeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHH
Confidence 87765321000000001112322221 1233343 457888889999999986 222332245566777
Q ss_pred HHHHHHHHHHHccCCCCCCeEEccCCCCChhhHHHHHHhcCCCCCeEEEEeecCCCCCChhhhhhhcChhhhhHHHHHHH
Q 008951 234 TISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFS 313 (547)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~vgP~~~~~~~w~~~~l~~~~~~id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~ 313 (547)
+.+-.+++|++.|+++.-.-+.-|.......|+-+=|.+.+...|.+...+||.-.| + +++ +. .
T Consensus 202 ~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhg--t--l~n---------L~---~ 265 (403)
T COG3867 202 LNAGIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHG--T--LNN---------LT---T 265 (403)
T ss_pred HHHHhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccC--c--HHH---------HH---h
Confidence 777777777777664211111123333344677666666777799999999986422 1 111 11 2
Q ss_pred HHHHHHHhcCCCCcEEEeccccCcC
Q 008951 314 QLENTLKSSATSAVAWVGESGGAYN 338 (547)
Q Consensus 314 ~~~~~~~~~~~~~p~wl~Etns~~~ 338 (547)
.+..+.++| +|.+.+-|+.-.|.
T Consensus 266 nl~dia~rY--~K~VmV~Etay~yT 288 (403)
T COG3867 266 NLNDIASRY--HKDVMVVETAYTYT 288 (403)
T ss_pred HHHHHHHHh--cCeEEEEEecceee
Confidence 344556666 47899999987653
No 16
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.0096 Score=62.03 Aligned_cols=180 Identities=15% Similarity=0.172 Sum_probs=104.1
Q ss_pred ceeeeecccCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCCeEEccCCCCChhhHHHHHHhcCCCCCeEEEEeecC
Q 008951 208 HGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNL 287 (547)
Q Consensus 208 ~~wElGNE~~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP~~~~~~~w~~~~l~~~~~~id~vs~H~Y~~ 287 (547)
--+++-|||+.. ..-.+|-+.+...++ +.+|.+ .+.| ...+.....|++ ..+.||+|+.|.|..
T Consensus 106 w~f~~~~~pn~~-----ad~~eyfk~y~~~a~---~~~p~i----~vg~---~w~~e~l~~~~k-~~d~idfvt~~a~~~ 169 (428)
T COG3664 106 WPFYSPNEPNLL-----ADKQEYFKLYDATAR---QRAPSI----QVGG---SWNTERLHEFLK-KADEIDFVTELANSV 169 (428)
T ss_pred cceeecCCCCcc-----cchHHHHHHHHhhhh---ccCcce----eecc---ccCcHHHhhhhh-ccCcccceeeccccc
Confidence 368899999862 334455544433333 334432 2222 111222334444 456799999999865
Q ss_pred CCC-CChhhh-hhhcChhhhhHHHHHHHHHHHHHHhcCCCCcEEEeccccCcCCCCCCcchHHHHHHHHHHHHhHHhhcC
Q 008951 288 GPG-VDQHLV-EKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHD 365 (547)
Q Consensus 288 ~~g-~~~~~~-~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vsdtf~aalw~lD~lg~aA~~g 365 (547)
... .+.... +-.+.+. .......+.+++.++++.-++|+.++|||..+ ++...+.++|+.|-.++..|..+...-
T Consensus 170 ~av~~~~~~~~~~~l~~~--~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt-~~~~~~n~sy~raa~i~~~Lr~~g~~v 246 (428)
T COG3664 170 DAVDFSTPGAEEVKLSEL--KRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLT-GPREPTNGSYVRAAYIMRLLREAGSPV 246 (428)
T ss_pred ccccccCCCchhhhhhhh--hhhhhHHHHHHHHHHhccCCCcceeecccccC-CCccccCceeehHHHHHHHHHhcCChh
Confidence 321 111111 1112222 23455667888889988889999999999988 466667788888766655555443211
Q ss_pred Cc--------ee---eeec--ccCCccccccCCCCCCCcchHHHHHHHHHhCCceEE
Q 008951 366 TK--------TY---CRQS--LIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALS 409 (547)
Q Consensus 366 ~~--------v~---~~q~--l~gg~Y~l~~~~~~~p~P~Yy~~ll~~~l~G~~vl~ 409 (547)
.. .. +.+. ++ +.+++++.- ...+|.|+.++++.++ |..+|.
T Consensus 247 ~a~~yW~~sdl~e~~g~~~~~~~-~gfel~~~~-~~rrpa~~~~l~~n~L-g~~~l~ 300 (428)
T COG3664 247 DAFGYWTNSDLHEEHGPPEAPFV-GGFELFAPY-GGRRPAWMAALFFNRL-GRTLLS 300 (428)
T ss_pred hhhhhhhcccccccCCCcccccc-cceeeeccc-ccchhHHHHHHHHHHH-HHHhhh
Confidence 10 00 1111 11 334555543 4578999999999999 877664
No 17
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.85 E-value=0.12 Score=58.50 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=38.0
Q ss_pred cceeeeecccCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCCeEEccCCCCChhhHHHHHHhcCCCCCeEEEEeec
Q 008951 207 IHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYN 286 (547)
Q Consensus 207 v~~wElGNE~~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP~~~~~~~w~~~~l~~~~~~id~vs~H~Y~ 286 (547)
|-.|.+|||+... ......-++++.+++|+.+|+ ++...+-..... ... ......+|++++|.|+
T Consensus 409 Ii~Ws~gNE~~~~-------~~~~~~~~~~l~~~~k~~Dpt---R~vt~~~~~~~~--~~~---~~~~~~~Dv~~~N~Y~ 473 (604)
T PRK10150 409 VVMWSIANEPASR-------EQGAREYFAPLAELTRKLDPT---RPVTCVNVMFAT--PDT---DTVSDLVDVLCLNRYY 473 (604)
T ss_pred EEEEeeccCCCcc-------chhHHHHHHHHHHHHHhhCCC---CceEEEecccCC--ccc---ccccCcccEEEEcccc
Confidence 6699999998641 122233456778888988876 443332110000 000 1122359999999886
Q ss_pred C
Q 008951 287 L 287 (547)
Q Consensus 287 ~ 287 (547)
.
T Consensus 474 ~ 474 (604)
T PRK10150 474 G 474 (604)
T ss_pred e
Confidence 4
No 18
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.15 E-value=0.49 Score=48.38 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCEEEEEeecC-CCCccCCC----CCCCCCCC---hHHHHHHHHHHHhcCcccceeeeecccCCCCCCCC
Q 008951 153 DELNAFFKKSGAKIVFGLNAL-TGRSIQND----GSVKGAWD---YTNAESFISYTVKKNYSIHGWELGNELCGNGVGTR 224 (547)
Q Consensus 153 d~f~~f~~~~G~~~i~glN~~-~~~~~~~~----~~~~g~W~---~~~A~~~v~y~~~~g~~v~~wElGNE~~~~~~~~~ 224 (547)
++|+++|.+.|.-++--+... .+..+..+ ......|. .++.+++|+..+.++ .|-.|++|||+
T Consensus 62 ~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-SIi~W~~gNE~-------- 132 (298)
T PF02836_consen 62 PRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDRNHP-SIIMWSLGNES-------- 132 (298)
T ss_dssp HHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-T-TEEEEEEEESS--------
T ss_pred HHHHHHHhhcCCEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCcCcC-chheeecCccC--------
Confidence 678999999999998766541 11100000 00001111 123344444333233 36699999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHccC
Q 008951 225 VAAAQYATDTISLRNVVQKIYTG 247 (547)
Q Consensus 225 ~t~~~Ya~d~~~~~~~~~~~~~~ 247 (547)
.+...+.++.+.+++.+|+
T Consensus 133 ----~~~~~~~~l~~~~k~~Dpt 151 (298)
T PF02836_consen 133 ----DYREFLKELYDLVKKLDPT 151 (298)
T ss_dssp ----HHHHHHHHHHHHHHHH-TT
T ss_pred ----ccccchhHHHHHHHhcCCC
Confidence 3455567788888888876
No 19
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=90.45 E-value=2.5 Score=43.68 Aligned_cols=216 Identities=16% Similarity=0.181 Sum_probs=96.3
Q ss_pred CcHHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEee
Q 008951 92 NSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLN 171 (547)
Q Consensus 92 ~~~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN 171 (547)
.-..+++++|..+...+|+ |+.. .++++-...+|+++++++.
T Consensus 14 ~p~~vv~l~ks~~i~~vri---------~d~~-----------------------------~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 14 SPCKVVSLLKSNGITKVRI---------YDAD-----------------------------PSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp -HHHHHHHHHHTT--EEEE---------SS-------------------------------HHHHHHHTTS--EEEEEE-
T ss_pred CHHHHHHHHHhcccccEEe---------ecCc-----------------------------HHHHHHHhcCCceeeeccC
Confidence 5577789999988877774 4321 2334444468999999886
Q ss_pred cCCCCccCCCCCCCCCCChHHHHHHHHHHHh---cCcccceeeeecccCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCC
Q 008951 172 ALTGRSIQNDGSVKGAWDYTNAESFISYTVK---KNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGV 248 (547)
Q Consensus 172 ~~~~~~~~~~~~~~g~W~~~~A~~~v~y~~~---~g~~v~~wElGNE~~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~ 248 (547)
-..-. ..+. ....|..|++--.. ..-++++.-+|||.-... .......-.+.+++++++.- .
T Consensus 56 N~~l~-~la~-------~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~~-----~~~~lvpAm~ni~~aL~~~~--L 120 (310)
T PF00332_consen 56 NEDLA-SLAS-------SQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTGT-----DNAYLVPAMQNIHNALTAAG--L 120 (310)
T ss_dssp GGGHH-HHHH-------HHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCCS-----GGGGHHHHHHHHHHHHHHTT---
T ss_pred hHHHH-Hhcc-------CHHHHhhhhhhcccccCcccceeeeecccccccCc-----cceeeccHHHHHHHHHHhcC--c
Confidence 21000 0000 23456678864222 124599999999986521 11145556677778887641 1
Q ss_pred CCCCeEEcc------------C-CCCChhh------HHHHHHhcCCC--CCeEEEEeecCCCCCChhhhh------hhcC
Q 008951 249 DSKPLIIAP------------G-GFFDAKW------FKEFLDKSGQS--LDVATHHIYNLGPGVDQHLVE------KILD 301 (547)
Q Consensus 249 ~~~~~~vgP------------~-~~~~~~w------~~~~l~~~~~~--id~vs~H~Y~~~~g~~~~~~~------~~l~ 301 (547)
..+.++.-| + +.+...+ +.+||+..+.. +..+.++-|..++..-+-... ...|
T Consensus 121 ~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D 200 (310)
T PF00332_consen 121 SDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVD 200 (310)
T ss_dssp TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEE
T ss_pred CCcceeccccccccccccCCCccCcccccchhhhhHHHHHhhccCCCceeccchhhhccCCcccCCcccccccccccccc
Confidence 123455432 2 1123333 34667766543 222222222212111000000 0001
Q ss_pred h--hhhhHHHHHHHHHHHHHHhcC-CCCcEEEeccccCcCCCCCCcchHHHHHHHHHHHHhHHhh
Q 008951 302 P--LYLDREVDTFSQLENTLKSSA-TSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAA 363 (547)
Q Consensus 302 ~--~~l~~~~~~~~~~~~~~~~~~-~~~p~wl~Etns~~~~G~~~vsdtf~aalw~lD~lg~aA~ 363 (547)
+ .|-.-+..+++.+...+.+.+ +++++|+||||-...|+ . .-+...|--+..-+-...+
T Consensus 201 ~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~-~--~a~~~nA~~~~~nl~~~~~ 262 (310)
T PF00332_consen 201 GGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGD-P--GATPENAQAYNQNLIKHVL 262 (310)
T ss_dssp TTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSS-T--TCSHHHHHHHHHHHHHHCC
T ss_pred cchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCC-C--CCCcchhHHHHHHHHHHHh
Confidence 1 111222344556665666543 57899999999776544 2 1234445444444444433
No 20
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=88.69 E-value=14 Score=37.92 Aligned_cols=194 Identities=16% Similarity=0.279 Sum_probs=79.2
Q ss_pred eEEEecCCCccc-ccCCceeEEEcccCCCCCCCCCCccccCcccCCCC-CCcHHH----HHHHHhcCCCeEecCCcccce
Q 008951 44 GNVFIDRRSVIG-RTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLD-LNSNIL----LNAVKAFSPLKIRLGGTLQDK 117 (547)
Q Consensus 44 ~~v~I~~~~~~~-~i~~~f~g~~ie~w~~~~~~y~g~~~~~~~~~~~~-l~~~~l----~~l~k~l~p~~LR~GG~~~D~ 117 (547)
-.|+|...+=.. .-..+|+=-.++.=|.+.. . .-...| |.++.. +.++|.||...||+
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~-------~--~~~~~DPLad~~~C~rDi~~l~~LgiNtIRV------- 72 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSS-------E--PSNYIDPLADPEACKRDIPLLKELGINTIRV------- 72 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE-------------------SS--GGG-HHHHHHHHHHHHHHT-SEEEE-------
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCC-------C--CccCcCcccCHHHHHHhHHHHHHcCCCEEEE-------
Confidence 345566665443 4456666666664332210 0 000133 444221 25789999999996
Q ss_pred eeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEeecCCCCccCCCCCCCCCCChHHHHHHH
Q 008951 118 VIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFI 197 (547)
Q Consensus 118 ~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~v 197 (547)
|.-++.. + -|++|..+...|.=+|+.||.-... ....++...|+..--....
T Consensus 73 Y~vdp~~------------n--------------Hd~CM~~~~~aGIYvi~Dl~~p~~s--I~r~~P~~sw~~~l~~~~~ 124 (314)
T PF03198_consen 73 YSVDPSK------------N--------------HDECMSAFADAGIYVILDLNTPNGS--INRSDPAPSWNTDLLDRYF 124 (314)
T ss_dssp S---TTS----------------------------HHHHHHHHHTT-EEEEES-BTTBS----TTS------HHHHHHHH
T ss_pred EEeCCCC------------C--------------HHHHHHHHHhCCCEEEEecCCCCcc--ccCCCCcCCCCHHHHHHHH
Confidence 2222211 1 1899999999999999999976332 1111233467654433222
Q ss_pred HHHH-hcCc-ccceeeeecccCCCCCCCCCCHHHHHHHH-HHHHHHHHHHccCCCCCCeEEccCCCCChhh---HHHHHH
Q 008951 198 SYTV-KKNY-SIHGWELGNELCGNGVGTRVAAAQYATDT-ISLRNVVQKIYTGVDSKPLIIAPGGFFDAKW---FKEFLD 271 (547)
Q Consensus 198 ~y~~-~~g~-~v~~wElGNE~~~~~~~~~~t~~~Ya~d~-~~~~~~~~~~~~~~~~~~~~vgP~~~~~~~w---~~~~l~ 271 (547)
+-.. -.+| ++.+|=+|||.-... .+..+..|.+-+ |..+..|++. ..+.+-+|-+.....++ +.+.|.
T Consensus 125 ~vid~fa~Y~N~LgFf~GNEVin~~--~~t~aap~vKAavRD~K~Yi~~~----~~R~IPVGYsaaD~~~~r~~~a~Yl~ 198 (314)
T PF03198_consen 125 AVIDAFAKYDNTLGFFAGNEVINDA--SNTNAAPYVKAAVRDMKAYIKSK----GYRSIPVGYSAADDAEIRQDLANYLN 198 (314)
T ss_dssp HHHHHHTT-TTEEEEEEEESSS-ST--T-GGGHHHHHHHHHHHHHHHHHS----SS----EEEEE---TTTHHHHHHHTT
T ss_pred HHHHHhccCCceEEEEecceeecCC--CCcccHHHHHHHHHHHHHHHHhc----CCCCCceeEEccCChhHHHHHHHHhc
Confidence 2111 1333 577999999986421 123355555432 3334444432 12334556433222222 334443
Q ss_pred hcC---CCCCeEEEEeecCC
Q 008951 272 KSG---QSLDVATHHIYNLG 288 (547)
Q Consensus 272 ~~~---~~id~vs~H~Y~~~ 288 (547)
++ ..+|++.+-.|-+.
T Consensus 199 -Cg~~~~~iDf~g~N~Y~WC 217 (314)
T PF03198_consen 199 -CGDDDERIDFFGLNSYEWC 217 (314)
T ss_dssp -BTT-----S-EEEEE----
T ss_pred -CCCcccccceeeeccceec
Confidence 33 25999999999764
No 21
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=88.30 E-value=11 Score=37.78 Aligned_cols=150 Identities=17% Similarity=0.236 Sum_probs=79.2
Q ss_pred HHHHHHhhcCCEEEEEeecCCCCccCCCCCCCCCCChHHHHHHHHHHHhcCc-ccceeeeecccCCCCCCCCCCHHHHHH
Q 008951 154 ELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNY-SIHGWELGNELCGNGVGTRVAAAQYAT 232 (547)
Q Consensus 154 ~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~v~y~~~~g~-~v~~wElGNE~~~~~~~~~~t~~~Ya~ 232 (547)
.+..-+++.|.++.+|+=.... ..-+.+. ..+..|-...++ .|..+-+|||.=. +...+++|.++
T Consensus 91 ~v~pAa~~~g~kv~lGiw~tdd----------~~~~~~~-til~ay~~~~~~d~v~~v~VGnEal~---r~~~tasql~~ 156 (305)
T COG5309 91 NVLPAAEASGFKVFLGIWPTDD----------IHDAVEK-TILSAYLPYNGWDDVTTVTVGNEALN---RNDLTASQLIE 156 (305)
T ss_pred hhHHHHHhcCceEEEEEeeccc----------hhhhHHH-HHHHHHhccCCCCceEEEEechhhhh---cCCCCHHHHHH
Confidence 3445567778899888854321 1101110 223344333444 3889999999743 34588999999
Q ss_pred HHHHHHHHHHHHccCCCCCCeEEccCCCCChhh--HHHHHHhcCCCCCeEEE--EeecCCCCCChhhhhhhcChhhhhHH
Q 008951 233 DTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKW--FKEFLDKSGQSLDVATH--HIYNLGPGVDQHLVEKILDPLYLDRE 308 (547)
Q Consensus 233 d~~~~~~~~~~~~~~~~~~~~~vgP~~~~~~~w--~~~~l~~~~~~id~vs~--H~Y~~~~g~~~~~~~~~l~~~~l~~~ 308 (547)
.....|.++++..-+ +| ++-.+.. ..| +.++.+ ..|++.. |.|..+... .+... .++
T Consensus 157 ~I~~vrsav~~agy~---gp-V~T~dsw--~~~~~np~l~~----~SDfia~N~~aYwd~~~~-----a~~~~-~f~--- 217 (305)
T COG5309 157 YIDDVRSAVKEAGYD---GP-VTTVDSW--NVVINNPELCQ----ASDFIAANAHAYWDGQTV-----ANAAG-TFL--- 217 (305)
T ss_pred HHHHHHHHHHhcCCC---Cc-eeecccc--eeeeCChHHhh----hhhhhhcccchhccccch-----hhhhh-HHH---
Confidence 999999999865111 12 2222211 011 233333 2366654 666543111 11111 122
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEeccccCcCC
Q 008951 309 VDTFSQLENTLKSSATSAVAWVGESGGAYNS 339 (547)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~ 339 (547)
..+++.++ ...+..+++|+||||--..|
T Consensus 218 ~~q~e~vq---sa~g~~k~~~v~EtGWPS~G 245 (305)
T COG5309 218 LEQLERVQ---SACGTKKTVWVTETGWPSDG 245 (305)
T ss_pred HHHHHHHH---HhcCCCccEEEeeccCCCCC
Confidence 22333333 23455599999999866543
No 22
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=85.61 E-value=9.8 Score=39.41 Aligned_cols=219 Identities=13% Similarity=0.132 Sum_probs=101.0
Q ss_pred ChhhHHHHHHHHhhcCCEEEEEeecCCCCccCCCCCCCC--CCChHH---HHHHH-HHH----HhcC--cccceeeeecc
Q 008951 148 PMHRWDELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKG--AWDYTN---AESFI-SYT----VKKN--YSIHGWELGNE 215 (547)
Q Consensus 148 t~~~~d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~~g--~W~~~~---A~~~v-~y~----~~~g--~~v~~wElGNE 215 (547)
+-+.-|.+++||++.|.++--- .+.=.. +.++ +... .+++.+ ..+.+ +|. ...+ .+|..|.|=||
T Consensus 57 ~~~~~D~~~~~a~~~g~~vrGH-~LvW~~-~~P~-w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE 133 (320)
T PF00331_consen 57 NFESADAILDWARENGIKVRGH-TLVWHS-QTPD-WVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNE 133 (320)
T ss_dssp E-HHHHHHHHHHHHTT-EEEEE-EEEESS-SS-H-HHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES
T ss_pred CccchhHHHHHHHhcCcceeee-eEEEcc-cccc-eeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeee
Confidence 3455699999999999986632 221110 1221 1011 234443 33322 332 2344 47999999999
Q ss_pred cCCC-C--CCCCCC------HHHHHHHHHHHHHHHHHHccCCCCCCeEEccC--CCCCh------hhHHHHHHhcCCCCC
Q 008951 216 LCGN-G--VGTRVA------AAQYATDTISLRNVVQKIYTGVDSKPLIIAPG--GFFDA------KWFKEFLDKSGQSLD 278 (547)
Q Consensus 216 ~~~~-~--~~~~~t------~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP~--~~~~~------~w~~~~l~~~~~~id 278 (547)
+-.. + .+-.-+ +.+|.+++-+ +.++.+|+. +++==+ ..... ...+.+. +.|..||
T Consensus 134 ~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~---~A~~~~P~a----~L~~NDy~~~~~~k~~~~~~lv~~l~-~~gvpId 205 (320)
T PF00331_consen 134 AIDDDGNPGGLRDSPWYDALGPDYIADAFR---AAREADPNA----KLFYNDYNIESPAKRDAYLNLVKDLK-ARGVPID 205 (320)
T ss_dssp -B-TTSSSSSBCTSHHHHHHTTCHHHHHHH---HHHHHHTTS----EEEEEESSTTSTHHHHHHHHHHHHHH-HTTHCS-
T ss_pred cccCCCccccccCChhhhcccHhHHHHHHH---HHHHhCCCc----EEEeccccccchHHHHHHHHHHHHHH-hCCCccc
Confidence 8542 1 110011 1344544433 334446653 333211 00010 1233333 3455699
Q ss_pred eEEEEeecCCCCCChhhhhhhcChhhhhHHHHHHHHHHHHHHhcCCCCcEEEeccccCcCCCCCCcchHHHHHHHHHHHH
Q 008951 279 VATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQL 358 (547)
Q Consensus 279 ~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vsdtf~aalw~lD~l 358 (547)
+|-+...... +. + + +.+...++.+ . .-|+|++|||.........+.....-..|-++-+.+
T Consensus 206 gIG~Q~H~~~-~~-~--------~---~~i~~~l~~~----~--~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~ 266 (320)
T PF00331_consen 206 GIGLQSHFDA-GY-P--------P---EQIWNALDRF----A--SLGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFL 266 (320)
T ss_dssp EEEEEEEEET-TS-S--------H---HHHHHHHHHH----H--TTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHH
T ss_pred eechhhccCC-CC-C--------H---HHHHHHHHHH----H--HcCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHH
Confidence 9997422111 11 1 1 1111122222 1 247999999987654322221122234566778888
Q ss_pred hHHhhcC---CceeeeecccC------C---cc-ccccCCCCCCCcchHHHH
Q 008951 359 GMAAAHD---TKTYCRQSLIG------G---NY-GLLNTTTFVPNPDYYSAL 397 (547)
Q Consensus 359 g~aA~~g---~~v~~~q~l~g------g---~Y-~l~~~~~~~p~P~Yy~~l 397 (547)
-++-++. +..+.-..+.. . ++ .|+|.+ +.|.|.||+.+
T Consensus 267 ~~~~~~~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~-~~~Kpa~~~~~ 317 (320)
T PF00331_consen 267 TACFSHPPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDED-YQPKPAYDAIV 317 (320)
T ss_dssp HHHHHTTHCTEEEEEESSSBTTGSTTGGHSEG--SSB-TT-SBB-HHHHHHH
T ss_pred HHHHhCCccCCCEEEEECCCCCCcccCCCCCCCCeeECCC-cCCCHHHHHHH
Confidence 7777666 44444443322 1 12 355666 88999998754
No 23
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=84.47 E-value=48 Score=35.00 Aligned_cols=61 Identities=11% Similarity=0.271 Sum_probs=40.6
Q ss_pred CCCCcchHHHHHHHHHhCCceEEeee--cCCcceEEEEEEEeCCCcEEEEEEeCCCCCeEEEEEE
Q 008951 387 FVPNPDYYSALLWHRLMGRNALSTSF--SGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVA 449 (547)
Q Consensus 387 ~~p~P~Yy~~ll~~~l~G~~vl~~~~--~~~~~l~~YA~~~~~~g~v~l~lIN~~~~~~~~v~i~ 449 (547)
|...|-||+.--|++++-+....+.. +.+..|.+-|.- +.+|+.++++.|+..... .++|+
T Consensus 432 fYKQPmfya~~hFSkFl~pGs~Rv~~~i~~~~~ve~~afl-npdGskvvVllnk~s~~~-~~~I~ 494 (518)
T KOG2566|consen 432 FYKQPMFYALGHFSKFLPPGSVRVGHSINQNLDVEATAFL-NPDGSKVVVLLNKNSLDS-PLTIK 494 (518)
T ss_pred HhhccHHHHHHHHhhcCCCCceEeeeeeccccccceeEEE-cCCCcEEEEEeccCCCCC-ceEEe
Confidence 45678999988899988554444433 334445554443 347999999999988664 55553
No 24
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=76.13 E-value=36 Score=41.11 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCCEEEEEeecC-CCCccCCCCCCCCCCCh---HHHHHHHHHHHhcCc-ccceeeeecccCCCCCCCCCCH
Q 008951 153 DELNAFFKKSGAKIVFGLNAL-TGRSIQNDGSVKGAWDY---TNAESFISYTVKKNY-SIHGWELGNELCGNGVGTRVAA 227 (547)
Q Consensus 153 d~f~~f~~~~G~~~i~glN~~-~~~~~~~~~~~~g~W~~---~~A~~~v~y~~~~g~-~v~~wElGNE~~~~~~~~~~t~ 227 (547)
++|+++|.+.|.=++=-.|+. .+......-.....|.. ++++++++- .++. .|-.|.+|||+.. +
T Consensus 397 p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~~~~~~~~~~~~mV~R--drNHPSIi~WSlgNE~~~---g----- 466 (1027)
T PRK09525 397 PLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPRWLPAMSERVTRMVQR--DRNHPSIIIWSLGNESGH---G----- 466 (1027)
T ss_pred HHHHHHHHHcCCEEEEecCccccCCccccCCCCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCccCCCc---C-----
Confidence 678999999999888666552 11000000000011211 112222221 1222 3779999999842 1
Q ss_pred HHHHHHHHHHHHHHHHHccC
Q 008951 228 AQYATDTISLRNVVQKIYTG 247 (547)
Q Consensus 228 ~~Ya~d~~~~~~~~~~~~~~ 247 (547)
..+.++.+++|+.+|+
T Consensus 467 ----~~~~~l~~~~k~~Dpt 482 (1027)
T PRK09525 467 ----ANHDALYRWIKSNDPS 482 (1027)
T ss_pred ----hhHHHHHHHHHhhCCC
Confidence 1245677888888875
No 25
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=72.45 E-value=17 Score=38.44 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEeecC
Q 008951 97 LNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLNAL 173 (547)
Q Consensus 97 ~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN~~ 173 (547)
+.++|++|...+|+|=- .|.. . .| +.+.| .-+.+|.+++.+++.|.++++++...
T Consensus 16 ~~~m~~~G~n~vri~~~-----~W~~-l-----EP----~eG~y-------dF~~lD~~l~~a~~~Gi~viL~~~~~ 70 (374)
T PF02449_consen 16 LRLMKEAGFNTVRIGEF-----SWSW-L-----EP----EEGQY-------DFSWLDRVLDLAAKHGIKVILGTPTA 70 (374)
T ss_dssp HHHHHHHT-SEEEE-CC-----EHHH-H------S----BTTB----------HHHHHHHHHHHCTT-EEEEEECTT
T ss_pred HHHHHHcCCCEEEEEEe-----chhh-c-----cC----CCCee-------ecHHHHHHHHHHHhccCeEEEEeccc
Confidence 57778899999998631 2321 0 12 11223 33557999999999999999988643
No 26
>TIGR03356 BGL beta-galactosidase.
Probab=72.24 E-value=8.3 Score=41.69 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEeecC
Q 008951 94 NILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLNAL 173 (547)
Q Consensus 94 ~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN~~ 173 (547)
++ +.++|.+|...+|++=.++-. +-.+.+ . + ++ =.-...+++++-+++.|.+||++|.=-
T Consensus 58 eD-i~l~~~~G~~~~R~si~Wsri--~p~g~~-~---~---n~----------~~~~~y~~~i~~l~~~gi~pivtL~Hf 117 (427)
T TIGR03356 58 ED-VALMKELGVDAYRFSIAWPRI--FPEGTG-P---V---NP----------KGLDFYDRLVDELLEAGIEPFVTLYHW 117 (427)
T ss_pred HH-HHHHHHcCCCeEEcccchhhc--ccCCCC-C---c---CH----------HHHHHHHHHHHHHHHcCCeeEEeeccC
Confidence 44 688899999999987665433 111110 0 0 00 012456899999999999999999632
Q ss_pred CCCccCCCCCCCCCCC-hHHHHHHHHHHH----hcCcccceeeeecccCC
Q 008951 174 TGRSIQNDGSVKGAWD-YTNAESFISYTV----KKNYSIHGWELGNELCG 218 (547)
Q Consensus 174 ~~~~~~~~~~~~g~W~-~~~A~~~v~y~~----~~g~~v~~wElGNE~~~ 218 (547)
.-..... ..|.|. ++....+++|++ ..+..|++|+.=|||+.
T Consensus 118 d~P~~l~---~~gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 118 DLPQALE---DRGGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred CccHHHH---hcCCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 1100000 124454 455667888874 46778999999999984
No 27
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=67.97 E-value=1.4e+02 Score=31.51 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=30.2
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCccCCCCCCCCCCChHHHHHHHHHH
Q 008951 150 HRWDELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYT 200 (547)
Q Consensus 150 ~~~d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~v~y~ 200 (547)
.++.+=.+-|+..|.++++.|--+.|.|... +.++|..++.|.
T Consensus 90 Tqi~~di~~CQS~GiKVlLSLGG~~GnYs~~--------~d~dA~~fA~~L 132 (568)
T KOG4701|consen 90 TQIETDIQVCQSNGIKVLLSLGGYNGNYSLN--------NDDDATNFAFQL 132 (568)
T ss_pred chhhhHHHHHHhcCeEEEEeccCcccceeec--------cchhHHHHHHHH
Confidence 3445557889999999999987777765554 245666666664
No 28
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=62.85 E-value=84 Score=29.23 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=54.9
Q ss_pred hHHHHHHHHhhcCCEEEEEeecCCCCccCCCCCCCCCCChHHH----HHHHHHHH-h--cCcccceeeeecccCCCCCCC
Q 008951 151 RWDELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKGAWDYTNA----ESFISYTV-K--KNYSIHGWELGNELCGNGVGT 223 (547)
Q Consensus 151 ~~d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~~g~W~~~~A----~~~v~y~~-~--~g~~v~~wElGNE~~~~~~~~ 223 (547)
-.+.+++.|++.|.++++||++... +|. ..+++.. ..+++... . +.-.++.|=|-+|++..
T Consensus 66 ~l~~~L~~A~~~Gmkv~~Gl~~~~~-------~w~-~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~---- 133 (166)
T PF14488_consen 66 LLEMILDAADKYGMKVFVGLYFDPD-------YWD-QGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY---- 133 (166)
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCch-------hhh-ccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc----
Confidence 4588999999999999999987532 122 1222221 12222111 1 12258899999999862
Q ss_pred CCCHHHHHHHHHHHHHHHHHHccCCCCCCeEEcc
Q 008951 224 RVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAP 257 (547)
Q Consensus 224 ~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP 257 (547)
++.. .+.++.+.+.++++.+ .+|..+.|
T Consensus 134 ~~~~---~~~~~~l~~~lk~~s~---~~Pv~ISp 161 (166)
T PF14488_consen 134 NWNA---PERFALLGKYLKQISP---GKPVMISP 161 (166)
T ss_pred ccch---HHHHHHHHHHHHHhCC---CCCeEEec
Confidence 2222 4556777788888755 36777766
No 29
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=57.10 E-value=13 Score=30.69 Aligned_cols=15 Identities=20% Similarity=0.545 Sum_probs=12.7
Q ss_pred CceEEcCceEEEEEe
Q 008951 524 QPVSVGPFSIVFVHM 538 (547)
Q Consensus 524 ~~~~lpp~Si~f~vl 538 (547)
..++|||+|...+.+
T Consensus 79 ~~~~lp~~s~~vl~~ 93 (95)
T PF02806_consen 79 ITVTLPPYSALVLKL 93 (95)
T ss_dssp EEEEESTTEEEEEEE
T ss_pred EEEEECCCEEEEEEE
Confidence 368999999988876
No 30
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=51.97 E-value=65 Score=39.00 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=44.6
Q ss_pred HHHHHHHhhcCCEEEEEeecCC-CCccCCCC-C--CCCCCCh---HHHHHHHHHHHhcCcccceeeeecccCCCCCCCCC
Q 008951 153 DELNAFFKKSGAKIVFGLNALT-GRSIQNDG-S--VKGAWDY---TNAESFISYTVKKNYSIHGWELGNELCGNGVGTRV 225 (547)
Q Consensus 153 d~f~~f~~~~G~~~i~glN~~~-~~~~~~~~-~--~~g~W~~---~~A~~~v~y~~~~g~~v~~wElGNE~~~~~~~~~~ 225 (547)
..|+++|.+.|.-++=-.|+.. +-....+. . ....|.. +++.++++-.+.+ -.|-.|.+|||...
T Consensus 381 ~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~mV~RdrNH-PSIi~WslGNE~~~------- 452 (1021)
T PRK10340 381 PRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVRHIHAQKNH-PSIIIWSLGNESGY------- 452 (1021)
T ss_pred HHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHHHHHhCCCC-CEEEEEECccCccc-------
Confidence 6789999999998776555421 10000000 0 0011211 2333444332212 23669999999842
Q ss_pred CHHHHHHHHHHHHHHHHHHccC
Q 008951 226 AAAQYATDTISLRNVVQKIYTG 247 (547)
Q Consensus 226 t~~~Ya~d~~~~~~~~~~~~~~ 247 (547)
+..++++.+++|+.+|+
T Consensus 453 -----g~~~~~~~~~~k~~Dpt 469 (1021)
T PRK10340 453 -----GCNIRAMYHAAKALDDT 469 (1021)
T ss_pred -----cHHHHHHHHHHHHhCCC
Confidence 22456788899998876
No 31
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=48.91 E-value=2.7e+02 Score=27.27 Aligned_cols=138 Identities=22% Similarity=0.268 Sum_probs=85.6
Q ss_pred CCCCcHHHHHHHHhcCCC--eEe--cCC-cccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcC
Q 008951 89 LDLNSNILLNAVKAFSPL--KIR--LGG-TLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSG 163 (547)
Q Consensus 89 ~~l~~~~l~~l~k~l~p~--~LR--~GG-~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G 163 (547)
..++-..+..++|.||.. =|| ++| ..+|.+ .+ .++-+.+++.|
T Consensus 15 P~l~v~affa~ak~lg~s~VeiRndl~~~~I~dg~-----------------------------p~---a~vka~Aek~G 62 (272)
T COG4130 15 PGLSVEAFFALAKRLGLSKVEIRNDLPSNAIADGT-----------------------------PA---AEVKALAEKAG 62 (272)
T ss_pred CCCCHHHHHHHHHHcCcceeEEecCCCcccccCCC-----------------------------CH---HHHHHHHHHcC
Confidence 346678889999999953 455 222 222221 11 56677799999
Q ss_pred CEEEEEeecCCCCccCCCCCCCCCCC---hHHHHHHHHHHHhcCcccceeeeecccCCCCCCCCCCHHHHHHHHHHHHHH
Q 008951 164 AKIVFGLNALTGRSIQNDGSVKGAWD---YTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNV 240 (547)
Q Consensus 164 ~~~i~glN~~~~~~~~~~~~~~g~W~---~~~A~~~v~y~~~~g~~v~~wElGNE~~~~~~~~~~t~~~Ya~d~~~~~~~ 240 (547)
..++ ++|+++.- ..|+ ..+|..+++|+..-|-+-.-.+-=|. +++.+.....++...-.++++.+
T Consensus 63 l~Iv-SINAlypF---------n~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd--~s~~~~~vr~~~lv~AlkaLkpi 130 (272)
T COG4130 63 LTIV-SINALYPF---------NEWTEERVAEARGLADYAAACGAKALVLCPLND--GSWPGTAVRREDLVEALKALKPI 130 (272)
T ss_pred cEEE-Eeeccccc---------cccChHHHHHHHHHHHHHHhcCCceEEEEeccC--CCCCCcccchHHHHHHHHHhhHH
Confidence 8765 89998753 3455 55688899999876765323333444 44455566777777777777777
Q ss_pred HHHHccCCCCCCeEEccCCCC-----ChhhHHHHHHhcCC
Q 008951 241 VQKIYTGVDSKPLIIAPGGFF-----DAKWFKEFLDKSGQ 275 (547)
Q Consensus 241 ~~~~~~~~~~~~~~vgP~~~~-----~~~w~~~~l~~~~~ 275 (547)
+.+.. - .-++-|=+|. ...|-.+.+.+++.
T Consensus 131 l~~~g-i----~GLVEPLGF~~csLRsk~eA~~aI~aa~g 165 (272)
T COG4130 131 LDEYG-I----TGLVEPLGFRVCSLRSKAEAAEAIRAAGG 165 (272)
T ss_pred HHHhC-c----cccccccCchhhhhhhHHHHHHHHHHhCC
Confidence 77642 1 1244455542 33577777776653
No 32
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=48.18 E-value=37 Score=37.29 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=66.5
Q ss_pred CcHHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEee
Q 008951 92 NSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLN 171 (547)
Q Consensus 92 ~~~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN 171 (547)
..++ +.++|.||....|++=+++=- +-.+... .+ ++ -| -...+++++-+++.|.+|+++|.
T Consensus 71 y~ED-I~Lm~elG~~~yRfSIsWsRI--~P~G~~~---~~---N~---~g-------l~~Y~~lid~l~~~GI~P~vTL~ 131 (477)
T PRK15014 71 YKED-IKLFAEMGFKCFRTSIAWTRI--FPKGDEA---QP---NE---EG-------LKFYDDMFDELLKYNIEPVITLS 131 (477)
T ss_pred cHHH-HHHHHHcCCCEEEecccceee--ccCCCCC---CC---CH---HH-------HHHHHHHHHHHHHcCCEEEEEee
Confidence 3455 688899999999987665332 2111110 00 00 01 23458889999999999999996
Q ss_pred cCCCCccCCCCCCC-CCC-ChHHHHHHHHHH----HhcCcccceeeeecccC
Q 008951 172 ALTGRSIQNDGSVK-GAW-DYTNAESFISYT----VKKNYSIHGWELGNELC 217 (547)
Q Consensus 172 ~~~~~~~~~~~~~~-g~W-~~~~A~~~v~y~----~~~g~~v~~wElGNE~~ 217 (547)
=-.-..... .. |.| +++.+..+++|| ...|.+|++|--=|||+
T Consensus 132 H~dlP~~L~---~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~ 180 (477)
T PRK15014 132 HFEMPLHLV---QQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEIN 180 (477)
T ss_pred CCCCCHHHH---HhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCcc
Confidence 221100000 12 667 566677888997 46788999999999997
No 33
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=44.52 E-value=1.8e+02 Score=30.58 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=29.0
Q ss_pred HHHhcCCCCcEEEeccccCcCC-CCC--CcchHHHHHHHHHHHHhHHhhcCCcee----eeecccC---CccccccCCCC
Q 008951 318 TLKSSATSAVAWVGESGGAYNS-GHN--LVTNAFVFSFWYLDQLGMAAAHDTKTY----CRQSLIG---GNYGLLNTTTF 387 (547)
Q Consensus 318 ~~~~~~~~~p~wl~Etns~~~~-G~~--~vsdtf~aalw~lD~lg~aA~~g~~v~----~~q~l~g---g~Y~l~~~~~~ 387 (547)
+++....++|+|+.|+.+...+ +.. ...+-.+ .+|..-.+. +|.+.+ .|+...| ..+|+++.+..
T Consensus 281 l~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~-~~~~~~~~A----~Ga~~i~~~~wr~~~~g~E~~~~g~~~~dg~ 355 (374)
T PF02449_consen 281 LMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGEL-RLWSWQAIA----HGADGILFWQWRQSRFGAEQFHGGLVDHDGR 355 (374)
T ss_dssp HHHHHTTT--EEEEEE--S--SSSSS-----TTHH-HHHHHHHHH----TT-S-EEEC-SB--SSSTTTTS--SB-TTS-
T ss_pred HHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHH-HHHHHHHHH----HhCCeeEeeeccCCCCCchhhhcccCCccCC
Confidence 3444467899999998664221 111 1111111 234333333 444422 3455555 45689998843
Q ss_pred CCCcchHHHH
Q 008951 388 VPNPDYYSAL 397 (547)
Q Consensus 388 ~p~P~Yy~~l 397 (547)
.+++.|.-..
T Consensus 356 ~~~~~~~e~~ 365 (374)
T PF02449_consen 356 EPTRRYREVA 365 (374)
T ss_dssp -B-HHHHHHH
T ss_pred CCCcHHHHHH
Confidence 7777776544
No 34
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=43.95 E-value=5.5e+02 Score=29.45 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=75.3
Q ss_pred HhcCcccceeeeecccCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCCeEEccCCCCChhhHHHHHHh--cCCCCC
Q 008951 201 VKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDK--SGQSLD 278 (547)
Q Consensus 201 ~~~g~~v~~wElGNE~~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP~~~~~~~w~~~~l~~--~~~~id 278 (547)
+.+|..|+|..+.||=.. + .+|. +.||+.+++.- -.+.+|++.+... ..+-..++.. ....||
T Consensus 168 ~~~gl~idYvg~~NEr~~-------~-~~~i---k~lr~~l~~~g---y~~vkiva~D~~~-~~~~~~m~~D~~l~~avd 232 (669)
T PF02057_consen 168 KTHGLDIDYVGIWNERGF-------D-VNYI---KWLRKALNSNG---YNKVKIVAADNNW-ESISDDMLSDPELRNAVD 232 (669)
T ss_dssp HHH-----EE-S-TTS-----------HHHH---HHHHHHHHHTT----TT-EEEEEEE-S-TTHHHHHHH-HHHHHH--
T ss_pred HHhCCCceEechhhccCC-------C-hhHH---HHHHHHHhhcc---ccceEEEEeCCCc-cchhhhhhcCHHHHhccc
Confidence 457999999999998642 2 3555 44667776541 1457899987542 2344444432 123499
Q ss_pred eEEEEeecCCCCCChhhhhhhcChhhhhHHHHHHHHHHHHHHhcCCCCcEEEeccccCcCCCCCCcchHHHHHHH--HHH
Q 008951 279 VATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFW--YLD 356 (547)
Q Consensus 279 ~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vsdtf~aalw--~lD 356 (547)
++..| |+.. +.. . . .+. .+||+|-.|-.+-++ +..+++-| .++
T Consensus 233 vig~H-Y~~~---~~~--~-------------~-------a~~--~~K~lW~SE~~s~~~-------~~~g~g~~ar~ln 277 (669)
T PF02057_consen 233 VIGYH-YPGT---YSS--K-------------N-------AKL--TGKPLWSSEDYSTFN-------YNVGAGCWARILN 277 (669)
T ss_dssp EEEEE-S-TT--------H-------------H-------HHH--HT-EEEEEEEE-S-T-------THHHHHHHHHHHH
T ss_pred Eeccc-cCCC---CcH--H-------------H-------HHH--hCCCeEEcCCccccc-------CcCchHHHHHHHH
Confidence 99999 4421 110 0 0 011 169999999665442 12222222 222
Q ss_pred HHhHHhhcCCceeeeecccCCccc--------cccC-----CCCCCCcchHHHHHHHHHhCC--ceEEeeecCCcceEEE
Q 008951 357 QLGMAAAHDTKTYCRQSLIGGNYG--------LLNT-----TTFVPNPDYYSALLWHRLMGR--NALSTSFSGTKKIRSY 421 (547)
Q Consensus 357 ~lg~aA~~g~~v~~~q~l~gg~Y~--------l~~~-----~~~~p~P~Yy~~ll~~~l~G~--~vl~~~~~~~~~l~~Y 421 (547)
+--. .-....++-|.+|++.|. |+.- +.+...+..|+..=+.++.-. +-|+. +..-..-..|
T Consensus 278 ~~yv--~g~mT~~I~w~lVasyYp~lpy~~~gL~~A~ePWSG~Y~v~~~iWv~AHtTQFt~pGW~YL~~-~G~l~~gGSY 354 (669)
T PF02057_consen 278 RNYV--NGRMTAYINWPLVASYYPGLPYSRKGLMTANEPWSGHYEVDSPIWVTAHTTQFTQPGWRYLDS-VGHLRGGGSY 354 (669)
T ss_dssp HHHH--HH--SEEEEE-SEE-S-TTSTTTT-SSCE---TTT---B--HHHHHHHHHHTT--TT-EEES---EE-TTS-EE
T ss_pred hhhh--ccceEEEEeehhhhhhcCCCCCCCccceEecCCcccceEecceeeeeeehhccCCCCeEEccC-ccccCCCcce
Confidence 2211 122345677889987773 3311 124567778888777776533 34432 1111122345
Q ss_pred EEEEeCCCcEEEEE
Q 008951 422 AHCAKQSKGLVLLL 435 (547)
Q Consensus 422 A~~~~~~g~v~l~l 435 (547)
...+...|.+++++
T Consensus 355 VtLtd~~gn~tiii 368 (669)
T PF02057_consen 355 VTLTDGTGNYTIII 368 (669)
T ss_dssp EEEE-SSS-EEEEE
T ss_pred EEeecCCCCceEEE
Confidence 55554456676655
No 35
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=37.78 E-value=68 Score=32.50 Aligned_cols=128 Identities=12% Similarity=0.053 Sum_probs=63.1
Q ss_pred ccChhhHHHHHHHHhhcCCEEEEEeecCCCCcc-CCCCCCCCCCChHHHHHHHHHHHhcCcccceeeeecccCCCCCCCC
Q 008951 146 CLPMHRWDELNAFFKKSGAKIVFGLNALTGRSI-QNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTR 224 (547)
Q Consensus 146 ~~t~~~~d~f~~f~~~~G~~~i~glN~~~~~~~-~~~~~~~g~W~~~~A~~~v~y~~~~g~~v~~wElGNE~~~~~~~~~ 224 (547)
.++.+....+.+||.+.|.+-++- |.+=.... ..+.+....+......++++|++++|..|..|---+.-
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv-D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~-------- 98 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV-DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETG-------- 98 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE-BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHT--------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe-ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcc--------
Confidence 457778899999999999998874 44321000 00001112334566889999999999888666433221
Q ss_pred CCHHHHHHHHHHHHHHHHHHccCCCCCCeEEccCCCCChhhHHHHHHhcCCCCCeEEEE
Q 008951 225 VAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHH 283 (547)
Q Consensus 225 ~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP~~~~~~~w~~~~l~~~~~~id~vs~H 283 (547)
++...|-++.+++-+.+++. +=...|..+++-++..-..|.+++++.+...==.|.+|
T Consensus 99 ~~~~~~~~~~~~~f~~~~~~-Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~LmvnfH 156 (273)
T PF10566_consen 99 GNVANLEKQLDEAFKLYAKW-GVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKLMVNFH 156 (273)
T ss_dssp TBHHHHHCCHHHHHHHHHHC-TEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT-EEEET
T ss_pred hhhHhHHHHHHHHHHHHHHc-CCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCcEEEec
Confidence 22333443323333333332 10002223333322112367788887765442355667
No 36
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=37.29 E-value=2.3e+02 Score=23.83 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHhhcCCEEEEEeecCCCCccCCCCCCCCCCChHHHHHHHHHHHhcCcccceeeeecccCCCCCCCCCCHH
Q 008951 149 MHRWDELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAA 228 (547)
Q Consensus 149 ~~~~d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~v~y~~~~g~~v~~wElGNE~~~~~~~~~~t~~ 228 (547)
...+..++++.++.|++..|.+.-.. ..+-.+.++...+. .+||||--+.+..-...+.+
T Consensus 17 ~~~~~~~~~~l~~~~i~at~fv~~~~---------------~~~~~~~l~~l~~~-----G~ei~~H~~~H~~~~~~~~~ 76 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPATFFVIGSW---------------VERYPDQLRELAAA-----GHEIGNHGWSHPNLSTLSPE 76 (123)
T ss_dssp HTHHHHHHHHHHHTT--EEEEE-HHH---------------HHHHHHHHHHHHHT-----T-EEEEE-SSSSCGGGS-HH
T ss_pred hhhHHHHHHHHHhcccceeeeecccc---------------cccccccchhHHHH-----HHHHHhcCCcccccccCCHH
Confidence 34568999999999999998775321 22233444444333 47889887754333567889
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCeEEccCCC
Q 008951 229 QYATDTISLRNVVQKIYTGVDSKPLIIAPGGF 260 (547)
Q Consensus 229 ~Ya~d~~~~~~~~~~~~~~~~~~~~~vgP~~~ 260 (547)
+..++..+-++.|++..+.. -..+.-|.+.
T Consensus 77 ~~~~ei~~~~~~l~~~~g~~--~~~f~~P~g~ 106 (123)
T PF01522_consen 77 ELRREIERSREILEEITGRP--PKGFRYPFGS 106 (123)
T ss_dssp HHHHHHHHHHHHHHHHHSSE--ESEEE-GGGE
T ss_pred HHHHHHHHHHHHHHHHhCCC--CcEEECCCCC
Confidence 99999999999999875431 1234446543
No 37
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=37.21 E-value=4.4e+02 Score=26.43 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=66.5
Q ss_pred HHHHHHHHhhcCCEEEEEeecCCCCccCCCCCCCCCCChHHHHHHHHHHHhcCcccceeeeecccCCCCCCCCCCHHHHH
Q 008951 152 WDELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYA 231 (547)
Q Consensus 152 ~d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~v~y~~~~g~~v~~wElGNE~~~~~~~~~~t~~~Ya 231 (547)
.+.+++..++.|++..|=++.... ...++ +++...+. .+||||=-+.+..-...++++..
T Consensus 30 t~riL~lL~~~gikATFFv~g~~~-----------e~~p~----lir~i~~~-----GhEIgsHg~sH~~l~~ls~ee~~ 89 (265)
T TIGR03006 30 TDRILDLLDRHGVKATFFTLGWVA-----------ERYPE----LVRRIVAA-----GHELASHGYGHERVTTQTPEAFR 89 (265)
T ss_pred HHHHHHHHHHcCCcEEEEEeccch-----------hhCHH----HHHHHHHc-----CCEeeeccccCcCchhCCHHHHH
Confidence 478899999999999997763211 01233 44444333 46888876653333467899999
Q ss_pred HHHHHHHHHHHHHccCCCCCC-eEEccCCCC--ChhhHHHHHHhcCCC
Q 008951 232 TDTISLRNVVQKIYTGVDSKP-LIIAPGGFF--DAKWFKEFLDKSGQS 276 (547)
Q Consensus 232 ~d~~~~~~~~~~~~~~~~~~~-~~vgP~~~~--~~~w~~~~l~~~~~~ 276 (547)
++..+..++|+++.+. .+ -+..|+... ...|..++|++.|-.
T Consensus 90 ~eI~~s~~~Le~itG~---~~~gfRaP~~s~~~~t~~a~~iL~e~Gy~ 134 (265)
T TIGR03006 90 ADIRRSKALLEDLSGQ---PVRGYRAPSFSIGKKNLWALDVLAEAGYR 134 (265)
T ss_pred HHHHHHHHHHHHHhCC---CceEEECCCCCCCCCcHHHHHHHHHCCCE
Confidence 9999999999987432 22 244565432 235777888887643
No 38
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=37.07 E-value=60 Score=35.66 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=65.5
Q ss_pred CcHHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEee
Q 008951 92 NSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLN 171 (547)
Q Consensus 92 ~~~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN 171 (547)
..++ +.++|.||....|++=+|+=- +=.+... .+ ++ -| -...+++.+-+.+.|.+|+++|.
T Consensus 69 y~eD-i~Lm~~lG~~~yRfSIsWsRI--~P~G~~~---~~---N~---~g-------l~~Y~~lid~L~~~GI~P~VTL~ 129 (476)
T PRK09589 69 YKED-IALFAEMGFKCFRTSIAWTRI--FPQGDEL---EP---NE---EG-------LQFYDDLFDECLKQGIEPVVTLS 129 (476)
T ss_pred hHHH-HHHHHHcCCCEEEeccchhhc--CcCCCCC---CC---CH---HH-------HHHHHHHHHHHHHcCCEEEEEec
Confidence 3455 688899999999987665322 1111100 00 00 00 13358888889999999999996
Q ss_pred cCCCCccCCCCCCCCCCChHH-HHHHHHHHH----hcCcccceeeeecccCC
Q 008951 172 ALTGRSIQNDGSVKGAWDYTN-AESFISYTV----KKNYSIHGWELGNELCG 218 (547)
Q Consensus 172 ~~~~~~~~~~~~~~g~W~~~~-A~~~v~y~~----~~g~~v~~wElGNE~~~ 218 (547)
=-.-.....+ .-|.|...+ +..+++||+ ..|.+|++|--=|||+.
T Consensus 130 H~dlP~~L~~--~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 130 HFEMPYHLVT--EYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred CCCCCHHHHH--hcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 2211000000 016675444 667888974 57899999999999984
No 39
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=37.01 E-value=63 Score=35.48 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=67.4
Q ss_pred cHHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEeec
Q 008951 93 SNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLNA 172 (547)
Q Consensus 93 ~~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN~ 172 (547)
.++ +.+++.||....|++=+++=. +-.+.... + ++ - .-...+.+++-+++.|.+|+++|+-
T Consensus 74 ~eD-i~l~~~lG~~~yR~si~WsRi--~P~g~~~~---~---n~---~-------~~~~Y~~~i~~l~~~gi~p~VtL~H 134 (474)
T PRK09852 74 KED-IALMAEMGFKVFRTSIAWSRL--FPQGDELT---P---NQ---Q-------GIAFYRSVFEECKKYGIEPLVTLCH 134 (474)
T ss_pred HHH-HHHHHHcCCCeEEeeceeeee--eeCCCCCC---C---CH---H-------HHHHHHHHHHHHHHcCCEEEEEeeC
Confidence 455 578899999999998776432 21111100 1 10 0 1244689999999999999999985
Q ss_pred CCCCccCCCCCCCCCCChHH-HHHHHHHHH----hcCcccceeeeecccCC
Q 008951 173 LTGRSIQNDGSVKGAWDYTN-AESFISYTV----KKNYSIHGWELGNELCG 218 (547)
Q Consensus 173 ~~~~~~~~~~~~~g~W~~~~-A~~~v~y~~----~~g~~v~~wElGNE~~~ 218 (547)
-.-.....+ .-|.|...+ +..+++|+. ..|..|++|--=|||+.
T Consensus 135 ~~~P~~l~~--~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 135 FDVPMHLVT--EYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred CCCCHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 322100000 116676654 556778863 57889999999999984
No 40
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=31.76 E-value=1.2e+02 Score=25.12 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCeEecCCc-ccceeeeecCCC-CCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEee
Q 008951 94 NILLNAVKAFSPLKIRLGGT-LQDKVIYDTEDN-RQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLN 171 (547)
Q Consensus 94 ~~l~~l~k~l~p~~LR~GG~-~~D~~~~~~~~~-~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN 171 (547)
..|.+.+..-|-.++|..|+ ..|-.--+.+.. .-+|.- ..+ .+..+..++++.+.+|++..|+++++.+-
T Consensus 4 rel~~~L~~~Gf~v~R~~~Sg~~DiiA~~~~~~l~IEvKs-~~~-------~~~~l~~eqve~L~~f~~~fg~~p~iAvK 75 (88)
T PF01870_consen 4 RELVKILWERGFAVVRAAGSGGGDIIAGKGGRYLAIEVKS-TSK-------DKIYLEKEQVEKLKEFSKRFGAEPLIAVK 75 (88)
T ss_dssp HHHHHHHHHTT-EEEEBSCCSSSSEEEEETTEEEEEEEEE-ESS-------SEEEEEHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHhCCcEEEEecCCCCcCEEEECCCEEEEEEEee-ccC-------CceeECHHHHHHHHHHHHHhCCeEEEEEE
Confidence 45788888899999996443 236655544321 001111 001 12467899999999999999999999987
Q ss_pred c
Q 008951 172 A 172 (547)
Q Consensus 172 ~ 172 (547)
+
T Consensus 76 ~ 76 (88)
T PF01870_consen 76 F 76 (88)
T ss_dssp E
T ss_pred E
Confidence 6
No 41
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=31.33 E-value=5.6e+02 Score=26.19 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHhhcCCEEEEEee
Q 008951 149 MHRWDELNAFFKKSGAKIVFGLN 171 (547)
Q Consensus 149 ~~~~d~f~~f~~~~G~~~i~glN 171 (547)
...+.+.++.|++.|.++++.+-
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSiG 81 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISIG 81 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEe
Confidence 34456667788999999998873
No 42
>PLN02998 beta-glucosidase
Probab=30.45 E-value=78 Score=35.00 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=64.9
Q ss_pred CcHHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEee
Q 008951 92 NSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLN 171 (547)
Q Consensus 92 ~~~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN 171 (547)
..++ +.++|.||...-|++=+|+=- +=.+.+ .+ ++ - .-...+.+.+-+.+.|.+|+++|.
T Consensus 84 y~ED-i~lmk~lG~~~YRfSIsWsRI--~P~G~g----~v---N~---~-------gl~~Y~~lid~L~~~GIeP~VTL~ 143 (497)
T PLN02998 84 YKED-VKLMADMGLEAYRFSISWSRL--LPSGRG----PI---NP---K-------GLQYYNNLIDELITHGIQPHVTLH 143 (497)
T ss_pred hHHH-HHHHHHcCCCeEEeeccHHhc--CcCCCC----Cc---CH---H-------HHHHHHHHHHHHHHcCCceEEEec
Confidence 3355 688899999998887655322 101110 00 00 0 123458888889999999999996
Q ss_pred cCCCCccCCCCCCC-CCCCh-HHHHHHHHHHH----hcCcccceeeeecccCC
Q 008951 172 ALTGRSIQNDGSVK-GAWDY-TNAESFISYTV----KKNYSIHGWELGNELCG 218 (547)
Q Consensus 172 ~~~~~~~~~~~~~~-g~W~~-~~A~~~v~y~~----~~g~~v~~wElGNE~~~ 218 (547)
=-.-..... .. |.|.. +.+..+++|++ +.|.+|++|--=|||+.
T Consensus 144 H~dlP~~L~---~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 144 HFDLPQALE---DEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CCCCCHHHH---HhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 221100000 12 55654 44667888874 57999999999999984
No 43
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=29.24 E-value=53 Score=29.07 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHHhcCCCeEecCCcccceeeee
Q 008951 90 DLNSNILLNAVKAFSPLKIRLGGTLQDKVIYD 121 (547)
Q Consensus 90 ~l~~~~l~~l~k~l~p~~LR~GG~~~D~~~~~ 121 (547)
..++-+|+...++||| |||=+=|..|+++||
T Consensus 6 ~~~~~RLlk~f~alGP-YlRE~qc~e~~ffFD 36 (127)
T PRK10984 6 GHPKSRLIKKFTALGP-YLREGQCEENRFFFD 36 (127)
T ss_pred CCCchHHHHHHHHhCc-hhchhcccCCCEEee
Confidence 3467788888899995 999999999999997
No 44
>PLN02849 beta-glucosidase
Probab=28.51 E-value=1.3e+02 Score=33.31 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEeecC
Q 008951 94 NILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLNAL 173 (547)
Q Consensus 94 ~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN~~ 173 (547)
++ +.++|.||....|++=+|+=- +=.+.+ .+ ++ - .-...+++.+-+.+.|.+|+++|.=-
T Consensus 83 eD-I~Lm~~lG~~aYRfSIsWsRI--~P~G~g----~v---N~---~-------gl~fY~~lid~l~~~GI~P~VTL~H~ 142 (503)
T PLN02849 83 ED-VKLMVETGLDAFRFSISWSRL--IPNGRG----SV---NP---K-------GLQFYKNFIQELVKHGIEPHVTLFHY 142 (503)
T ss_pred HH-HHHHHHcCCCeEEEeccHHhc--CcCCCC----CC---CH---H-------HHHHHHHHHHHHHHcCCeEEEeecCC
Confidence 44 688899999888887655322 101110 00 00 0 12335888889999999999999622
Q ss_pred CCCccCCCCCCC-CCCCh-HHHHHHHHHHH----hcCcccceeeeecccCC
Q 008951 174 TGRSIQNDGSVK-GAWDY-TNAESFISYTV----KKNYSIHGWELGNELCG 218 (547)
Q Consensus 174 ~~~~~~~~~~~~-g~W~~-~~A~~~v~y~~----~~g~~v~~wElGNE~~~ 218 (547)
.-..... .. |.|.. +.+..+++||+ ..|.+|++|--=|||+.
T Consensus 143 dlP~~L~---~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 143 DHPQYLE---DDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred CCcHHHH---HhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 1100000 12 56654 44677888974 57899999999999984
No 45
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=27.44 E-value=1.7e+02 Score=34.36 Aligned_cols=59 Identities=20% Similarity=0.153 Sum_probs=34.1
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCccCCCCCCCCCCChHHHHHHHHHHHh---cCcccceeeeecccC
Q 008951 153 DELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVK---KNYSIHGWELGNELC 217 (547)
Q Consensus 153 d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~v~y~~~---~g~~v~~wElGNE~~ 217 (547)
++|+++|.+.|.=++=-.++..-... + ... -.+++.+-+++... ..-.|--|.+|||+.
T Consensus 347 ~~~ydLcDelGllV~~Ea~~~~~~~~--~---~~~-~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 347 EEFYDLCDELGLLVIDEAMIETHGMP--D---DPE-WRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred HHHHHHHHHhCcEEEEecchhhcCCC--C---Ccc-hhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 68899999999988866665322100 0 111 23344443333321 222366999999975
No 46
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=26.07 E-value=1.5e+02 Score=27.54 Aligned_cols=67 Identities=13% Similarity=0.002 Sum_probs=41.1
Q ss_pred ccChhhHHHHHHHHhhcCCEEEEEeecCCCCccCCCCCC-CCCCC---hHHHHHHHHHHHhcCcccceeeee
Q 008951 146 CLPMHRWDELNAFFKKSGAKIVFGLNALTGRSIQNDGSV-KGAWD---YTNAESFISYTVKKNYSIHGWELG 213 (547)
Q Consensus 146 ~~t~~~~d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~-~g~W~---~~~A~~~v~y~~~~g~~v~~wElG 213 (547)
.+++.+|++.++-.++.|.+-++--..+.+....-.... .+.|. ..-...+++.|.+.|.+| .+.++
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv-~~Gl~ 86 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKV-FVGLY 86 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEE-EEeCC
Confidence 678999999999999999987766655544211100000 00000 112345666778889888 76666
No 47
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=25.70 E-value=49 Score=29.17 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHhcCCCeEecCCcccceeeee
Q 008951 91 LNSNILLNAVKAFSPLKIRLGGTLQDKVIYD 121 (547)
Q Consensus 91 l~~~~l~~l~k~l~p~~LR~GG~~~D~~~~~ 121 (547)
.++-+|+...++||| |||=+=|..|+++||
T Consensus 5 ~~~~RLlk~f~alGP-YlRE~qc~e~~ffFD 34 (125)
T PF07417_consen 5 PTHSRLLKKFAALGP-YLREGQCQEDRFFFD 34 (125)
T ss_dssp S-HHHHHHHHHTT-T-TB-GGG-BTTEEEEE
T ss_pred CchHHHHHHHHhhCc-hhcccccccCcEeee
Confidence 456778888899995 999999999999997
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=23.82 E-value=1.7e+02 Score=31.83 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=65.1
Q ss_pred HHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEeecCCC
Q 008951 96 LLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLNALTG 175 (547)
Q Consensus 96 l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN~~~~ 175 (547)
=+.|++.+|-...|++=.++= ++-.+.+.. | ++. | -...+++++=|.+.|.+++++|+=-..
T Consensus 64 Di~L~~emG~~~~R~SI~WsR--IfP~g~~~e---~---N~~---g-------l~fY~~l~del~~~gIep~vTL~Hfd~ 125 (460)
T COG2723 64 DIALAKEMGLNAFRTSIEWSR--IFPNGDGGE---V---NEK---G-------LRFYDRLFDELKARGIEPFVTLYHFDL 125 (460)
T ss_pred HHHHHHHcCCCEEEeeeeEEE--eecCCCCCC---c---CHH---H-------HHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 378999999999998755422 232222111 1 111 1 123488888899999999999863211
Q ss_pred CccCCCCCCCCCCChHHHH-HHHHHHH----hcCcccceeeeecccCC
Q 008951 176 RSIQNDGSVKGAWDYTNAE-SFISYTV----KKNYSIHGWELGNELCG 218 (547)
Q Consensus 176 ~~~~~~~~~~g~W~~~~A~-~~v~y~~----~~g~~v~~wElGNE~~~ 218 (547)
..-..+ .-|.|...+.. .+++||+ +.+.+|++|-.=|||+.
T Consensus 126 P~~L~~--~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~ 171 (460)
T COG2723 126 PLWLQK--PYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNV 171 (460)
T ss_pred cHHHhh--ccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhh
Confidence 100101 12578777755 4677764 57889999999999985
No 49
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=23.69 E-value=1.7e+02 Score=30.26 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=47.2
Q ss_pred HhcCcccceeeeecccCCCC--CCC--CCCHHHHHHHHHHHHHHHHHHccCCCCCCeEE--ccCCC--CChhhHHHHHHh
Q 008951 201 VKKNYSIHGWELGNELCGNG--VGT--RVAAAQYATDTISLRNVVQKIYTGVDSKPLII--APGGF--FDAKWFKEFLDK 272 (547)
Q Consensus 201 ~~~g~~v~~wElGNE~~~~~--~~~--~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~v--gP~~~--~~~~w~~~~l~~ 272 (547)
+..+..| .|-.+.|.+|.. .|. ..+|++|.+-|+...+.|++..+- ...+- .|... ...+|.
T Consensus 147 ~~~~vPV-l~Rp~HE~nG~WfwWg~~~~~~~~~y~~lwr~~~~~l~~~~g~---~Nliwvw~~~~~~~~~~~yY------ 216 (311)
T PF02156_consen 147 KDAGVPV-LFRPFHEMNGGWFWWGAKGHCTPEQYKALWRHMVDYLRNVKGL---HNLIWVWSPNGSRDDAAEYY------ 216 (311)
T ss_dssp HCTTS-E-EEEESTSTTSSSSTTSTTSTCHHHHHHHHHHHHHHHHHTTST----TSEEEEE-EBTTSSCTCTT-------
T ss_pred hcCCCeE-EEeehhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHHhccCC---ceEEEEecCCCCCCCccccC------
Confidence 4567788 999999999832 232 356999999999999999865221 12232 34332 112331
Q ss_pred cCC-CCCeEEEEeecC
Q 008951 273 SGQ-SLDVATHHIYNL 287 (547)
Q Consensus 273 ~~~-~id~vs~H~Y~~ 287 (547)
-|+ .||.+.+=.|..
T Consensus 217 PGD~yVDivG~D~Y~~ 232 (311)
T PF02156_consen 217 PGDDYVDIVGVDVYND 232 (311)
T ss_dssp --TTT-SEEEEEEEES
T ss_pred CCCCeEEEEEEeCCCC
Confidence 233 499999999875
No 50
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=23.58 E-value=1.9e+02 Score=31.89 Aligned_cols=106 Identities=10% Similarity=0.113 Sum_probs=65.1
Q ss_pred CcHHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEee
Q 008951 92 NSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLN 171 (547)
Q Consensus 92 ~~~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN 171 (547)
..++ +.++|.||...-|++=+|+=- +=.+... .+ ++ -| -...+++.+-+.+.|.+|+++|.
T Consensus 75 y~eD-i~Lm~~lG~~aYRfSIsWsRI--~P~G~~~---~~---N~---~g-------l~~Y~~lId~L~~~GI~P~VTL~ 135 (478)
T PRK09593 75 YKED-IALFAEMGFKTYRMSIAWTRI--FPKGDEL---EP---NE---AG-------LQFYEDIFKECHKYGIEPLVTIT 135 (478)
T ss_pred hHHH-HHHHHHcCCCEEEEecchhhc--ccCCCCC---CC---CH---HH-------HHHHHHHHHHHHHcCCEEEEEec
Confidence 3455 688899999888887655322 1011000 00 00 00 13458889999999999999996
Q ss_pred cCCCCccCCCCCCCCCCChHH-HHHHHHHHH----hcCcccceeeeecccCC
Q 008951 172 ALTGRSIQNDGSVKGAWDYTN-AESFISYTV----KKNYSIHGWELGNELCG 218 (547)
Q Consensus 172 ~~~~~~~~~~~~~~g~W~~~~-A~~~v~y~~----~~g~~v~~wElGNE~~~ 218 (547)
=-.-.....+ .-|.|...+ +..+++||+ ..|.+|++|--=|||+.
T Consensus 136 H~dlP~~L~~--~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 185 (478)
T PRK09593 136 HFDCPMHLIE--EYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINM 185 (478)
T ss_pred ccCCCHHHHh--hcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhh
Confidence 2111000000 116675544 567888874 57999999999999984
No 51
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=23.37 E-value=1.5e+02 Score=32.44 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=65.3
Q ss_pred CcHHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccChhhHHHHHHHHhhcCCEEEEEee
Q 008951 92 NSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGAKIVFGLN 171 (547)
Q Consensus 92 ~~~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~~~~d~f~~f~~~~G~~~i~glN 171 (547)
..++ +.++|.||....|++=+++=- +=.+.+ .+ ++ - .-...+++++-+.+.|.+|+++|.
T Consensus 56 y~eD-i~L~~~lG~~~yRfSIsWsRI--~P~G~g----~v---N~---~-------gl~~Y~~lid~l~~~GI~P~VTL~ 115 (469)
T PRK13511 56 YPED-LKLAEEFGVNGIRISIAWSRI--FPDGYG----EV---NP---K-------GVEYYHRLFAECHKRHVEPFVTLH 115 (469)
T ss_pred hHHH-HHHHHHhCCCEEEeeccHhhc--CcCCCC----Cc---CH---H-------HHHHHHHHHHHHHHcCCEEEEEec
Confidence 3455 588999999999987665322 101110 00 10 0 123458899999999999999996
Q ss_pred cCCCCccCCCCCCCCCCChHH-HHHHHHHHH----hcCcccceeeeecccCC
Q 008951 172 ALTGRSIQNDGSVKGAWDYTN-AESFISYTV----KKNYSIHGWELGNELCG 218 (547)
Q Consensus 172 ~~~~~~~~~~~~~~g~W~~~~-A~~~v~y~~----~~g~~v~~wElGNE~~~ 218 (547)
=-.-..... ..|.|...+ +..+++||. +.|. |++|--=|||+.
T Consensus 116 H~dlP~~L~---~~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~ 163 (469)
T PRK13511 116 HFDTPEALH---SNGDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGP 163 (469)
T ss_pred CCCCcHHHH---HcCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhh
Confidence 321110000 136675444 667888874 5788 999999999984
No 52
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=23.02 E-value=1.4e+02 Score=32.58 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCCeEecCCcccceeeeecCCCCCccCccccCCCCccCccccccCh---hhHHHHHHHHhhcCCEEEEEe
Q 008951 94 NILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPM---HRWDELNAFFKKSGAKIVFGL 170 (547)
Q Consensus 94 ~~l~~l~k~l~p~~LR~GG~~~D~~~~~~~~~~~~~~p~~~~~~~~fg~~~~~~t~---~~~d~f~~f~~~~G~~~i~gl 170 (547)
++ +.++|.||....|++=+++=- + +. . .++.+.+ ...+++.+-+++.|.+|+++|
T Consensus 62 eD-i~l~~~lg~~~yRfsi~W~Ri--~-P~----g--------------~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL 119 (455)
T PF00232_consen 62 ED-IALMKELGVNAYRFSISWSRI--F-PD----G--------------FEGKVNEEGLDFYRDLIDELLENGIEPIVTL 119 (455)
T ss_dssp HH-HHHHHHHT-SEEEEE--HHHH--S-TT----S--------------SSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HH-HHHHHhhccceeeeecchhhe--e-ec----c--------------cccccCHhHhhhhHHHHHHHHhhccceeeee
Confidence 44 688999999998886554211 1 11 0 0012222 334888888999999999999
Q ss_pred ecCCCCccCCCCCCCCCCC-hHHHHHHHHHHH----hcCcccceeeeecccCC
Q 008951 171 NALTGRSIQNDGSVKGAWD-YTNAESFISYTV----KKNYSIHGWELGNELCG 218 (547)
Q Consensus 171 N~~~~~~~~~~~~~~g~W~-~~~A~~~v~y~~----~~g~~v~~wElGNE~~~ 218 (547)
.=-.-..-.. ..|.|. ++.+..+++||+ ..|..|++|---|||+.
T Consensus 120 ~H~~~P~~l~---~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~ 169 (455)
T PF00232_consen 120 YHFDLPLWLE---DYGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNV 169 (455)
T ss_dssp ESS--BHHHH---HHTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHH
T ss_pred eeccccccee---ecccccCHHHHHHHHHHHHHHHHHhCCCcceEEeccccce
Confidence 7321100000 025564 455667888874 57889999999999974
No 53
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=22.93 E-value=8.8e+02 Score=25.31 Aligned_cols=91 Identities=11% Similarity=0.088 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcCCEEEEEeecCCCCccCCCCC-CCCCCChHHHHHHHHH-----HHhcCcccceeeeecccCCC-C--C-
Q 008951 152 WDELNAFFKKSGAKIVFGLNALTGRSIQNDGS-VKGAWDYTNAESFISY-----TVKKNYSIHGWELGNELCGN-G--V- 221 (547)
Q Consensus 152 ~d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~-~~g~W~~~~A~~~v~y-----~~~~g~~v~~wElGNE~~~~-~--~- 221 (547)
=|.+.+||++-|..+=+ -++-=.. +.++ | ....|..+..++.++- +......+.+|-|=||+=.. + +
T Consensus 84 AD~ia~FAr~h~m~lhG-HtLvW~~-q~P~-W~~~~e~~~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~vdd~g~~R~ 160 (345)
T COG3693 84 ADAIANFARKHNMPLHG-HTLVWHS-QVPD-WLFGDELSKEALAKMVEEHIKTVVGRYKGSVASWDVVNEAVDDQGSLRR 160 (345)
T ss_pred hHHHHHHHHHcCCeecc-ceeeecc-cCCc-hhhccccChHHHHHHHHHHHHHHHHhccCceeEEEecccccCCCchhhh
Confidence 39999999998876432 1111000 1221 1 1122455556655542 22344458899999998321 1 1
Q ss_pred --C-CCCCHHHHHHHHHHHHHHHHHHccCC
Q 008951 222 --G-TRVAAAQYATDTISLRNVVQKIYTGV 248 (547)
Q Consensus 222 --~-~~~t~~~Ya~d~~~~~~~~~~~~~~~ 248 (547)
+ ...+..+|.+..-..++ +++|++
T Consensus 161 s~w~~~~~gpd~I~~aF~~Ar---eadP~A 187 (345)
T COG3693 161 SAWYDGGTGPDYIKLAFHIAR---EADPDA 187 (345)
T ss_pred hhhhccCCccHHHHHHHHHHH---hhCCCc
Confidence 1 22456677765443333 356664
No 54
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=22.29 E-value=72 Score=21.21 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=15.2
Q ss_pred CCCCCChHHHHHHHHHHH
Q 008951 184 VKGAWDYTNAESFISYTV 201 (547)
Q Consensus 184 ~~g~W~~~~A~~~v~y~~ 201 (547)
+.|.|+..+|.++.++|.
T Consensus 14 pK~dWtanea~~fAKhCv 31 (32)
T PF11216_consen 14 PKGDWTANEAADFAKHCV 31 (32)
T ss_pred CcccCcHhHHHHHHHhhc
Confidence 458999999999999873
No 55
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=21.76 E-value=6.5e+02 Score=23.33 Aligned_cols=104 Identities=19% Similarity=0.255 Sum_probs=62.4
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCccCCCCCCCCCCChHHHHHHHHHHHhcCcccceeeeecccCCCCCCCCCCHHHHHH
Q 008951 153 DELNAFFKKSGAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYAT 232 (547)
Q Consensus 153 d~f~~f~~~~G~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~v~y~~~~g~~v~~wElGNE~~~~~~~~~~t~~~Ya~ 232 (547)
..+.+..++.|++..|=++-.. ..+-.++++...+. .+||||=-+.+..-..+++++..+
T Consensus 22 ~~~l~~L~~~~ikaTfFv~g~~---------------~~~~~~~~~~i~~~-----Gheig~Ht~~H~~~~~~~~~~~~~ 81 (191)
T TIGR02764 22 EPILDTLKEYDVKATFFLSGSW---------------AERHPELVKEIVKD-----GHEIGSHGYRHKNYTTLEDEKIKK 81 (191)
T ss_pred HHHHHHHHHcCCCEEEEeccHH---------------HHHCHHHHHHHHhC-----CCEEEECCcCCCCcccCCHHHHHH
Confidence 5678889999999888554211 11122444444444 468899887643334578999999
Q ss_pred HHHHHHHHHHHHccCCCCCCe-EEccCCCCChhhHHHHHHhcCCCCCeEEE
Q 008951 233 DTISLRNVVQKIYTGVDSKPL-IIAPGGFFDAKWFKEFLDKSGQSLDVATH 282 (547)
Q Consensus 233 d~~~~~~~~~~~~~~~~~~~~-~vgP~~~~~~~w~~~~l~~~~~~id~vs~ 282 (547)
|...-.++|++..+. .+. +.-|.+..+ .-..+++++.| +..+.|
T Consensus 82 ei~~~~~~l~~~~g~---~~~~fr~P~G~~~-~~~~~~l~~~G--~~~v~w 126 (191)
T TIGR02764 82 DILRAQEIIEKLTGK---KPTLFRPPSGAFN-KAVLKAAESLG--YTVVHW 126 (191)
T ss_pred HHHHHHHHHHHHhCC---CCCEEECCCcCCC-HHHHHHHHHcC--CeEEEe
Confidence 999999999887432 233 344655433 23344454443 444444
No 56
>PRK14706 glycogen branching enzyme; Provisional
Probab=20.97 E-value=4.3e+02 Score=30.23 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=20.6
Q ss_pred ChhhHHHHHHHHhhcCCEEEEEeec
Q 008951 148 PMHRWDELNAFFKKSGAKIVFGLNA 172 (547)
Q Consensus 148 t~~~~d~f~~f~~~~G~~~i~glN~ 172 (547)
++..+..|.+-|.+.|.++|+-+=+
T Consensus 215 ~~~~~~~lv~~~H~~gi~VilD~v~ 239 (639)
T PRK14706 215 TPEDFKYLVNHLHGLGIGVILDWVP 239 (639)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3678899999999999999986544
No 57
>smart00632 Aamy_C Aamy_C domain.
Probab=20.34 E-value=4.5e+02 Score=20.92 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=13.3
Q ss_pred CcEEEEEEeCCCCCeEEEEE
Q 008951 429 KGLVLLLINLDNSTTVHASV 448 (547)
Q Consensus 429 g~v~l~lIN~~~~~~~~v~i 448 (547)
|...+++||++... .++++
T Consensus 16 g~~g~VaiN~~~~~-~~~~~ 34 (81)
T smart00632 16 GSKGFVAINRSDSD-LTITL 34 (81)
T ss_pred CCeEEEEEECCCCc-eEEEE
Confidence 67788899998753 34454
Done!