Query 008953
Match_columns 547
No_of_seqs 180 out of 2236
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 18:36:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 1.2E-45 2.6E-50 397.0 39.8 503 32-543 32-541 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 1.9E-39 4.1E-44 332.7 36.1 422 32-515 16-451 (498)
3 PRK10207 dipeptide/tripeptide 100.0 2E-35 4.4E-40 317.4 42.7 422 33-518 10-439 (489)
4 PRK15462 dipeptide/tripeptide 100.0 2.8E-35 6.1E-40 312.4 42.1 417 34-519 6-439 (493)
5 TIGR00924 yjdL_sub1_fam amino 100.0 2.6E-34 5.6E-39 308.4 43.1 423 33-519 6-442 (475)
6 PRK09584 tppB putative tripept 100.0 4.8E-33 1E-37 300.4 42.2 415 34-517 18-441 (500)
7 TIGR00926 2A1704 Peptide:H+ sy 100.0 1.3E-26 2.9E-31 254.1 30.9 339 51-449 1-346 (654)
8 PRK14995 methyl viologen resis 99.9 5.4E-23 1.2E-27 222.4 34.0 402 36-520 5-413 (495)
9 TIGR00900 2A0121 H+ Antiporter 99.9 1.2E-22 2.7E-27 209.3 33.2 359 41-520 3-363 (365)
10 PRK12382 putative transporter; 99.9 3.6E-22 7.8E-27 209.4 36.0 351 36-521 14-365 (392)
11 PRK05122 major facilitator sup 99.9 4.2E-22 9.2E-27 209.3 36.5 351 35-520 13-364 (399)
12 PRK03545 putative arabinose tr 99.9 1.8E-22 3.8E-27 211.7 32.5 348 36-521 8-356 (390)
13 PRK11646 multidrug resistance 99.9 1.5E-22 3.2E-27 213.1 31.9 349 40-522 13-361 (400)
14 PRK10054 putative transporter; 99.9 8.1E-23 1.7E-27 214.7 28.0 353 35-521 5-360 (395)
15 PRK10213 nepI ribonucleoside t 99.9 5.7E-22 1.2E-26 208.2 33.9 177 31-240 14-190 (394)
16 TIGR00711 efflux_EmrB drug res 99.9 2.2E-22 4.7E-27 216.7 31.1 396 39-519 4-409 (485)
17 PRK11551 putative 3-hydroxyphe 99.9 4.8E-22 1E-26 209.3 33.0 358 35-520 13-370 (406)
18 PRK10504 putative transporter; 99.9 5.1E-22 1.1E-26 213.4 33.8 408 36-522 9-417 (471)
19 TIGR01299 synapt_SV2 synaptic 99.9 1.7E-22 3.7E-27 224.5 28.4 156 56-243 185-353 (742)
20 PF07690 MFS_1: Major Facilita 99.9 4.2E-22 9.1E-27 204.4 29.4 350 43-511 2-352 (352)
21 TIGR00903 2A0129 major facilit 99.9 6.5E-22 1.4E-26 205.6 29.6 154 56-242 9-162 (368)
22 TIGR00895 2A0115 benzoate tran 99.9 1.7E-21 3.7E-26 203.2 32.7 169 36-237 16-184 (398)
23 TIGR00891 2A0112 putative sial 99.9 2.4E-21 5.3E-26 202.9 32.7 173 33-238 8-182 (405)
24 PRK10406 alpha-ketoglutarate t 99.9 7.6E-21 1.6E-25 202.2 35.2 176 37-237 22-211 (432)
25 COG2814 AraJ Arabinose efflux 99.9 3.5E-21 7.5E-26 196.4 31.0 352 33-520 9-361 (394)
26 PF00854 PTR2: POT family; In 99.9 9.9E-24 2.1E-28 219.8 12.0 364 104-503 1-369 (372)
27 PRK15402 multidrug efflux syst 99.9 1.1E-20 2.4E-25 199.1 32.3 342 53-520 29-370 (406)
28 PRK09952 shikimate transporter 99.9 4.3E-20 9.3E-25 196.7 36.6 175 36-235 21-210 (438)
29 TIGR02332 HpaX 4-hydroxyphenyl 99.9 7.9E-21 1.7E-25 200.7 30.7 175 35-242 6-186 (412)
30 TIGR00893 2A0114 d-galactonate 99.9 3.1E-21 6.7E-26 200.4 27.2 154 58-243 14-167 (399)
31 TIGR00890 2A0111 Oxalate/Forma 99.9 4.7E-21 1E-25 198.2 27.8 338 53-520 19-357 (377)
32 PRK09705 cynX putative cyanate 99.9 2E-20 4.4E-25 196.4 32.6 340 44-522 16-357 (393)
33 TIGR00899 2A0120 sugar efflux 99.9 3.3E-20 7.2E-25 192.6 33.5 169 43-243 3-174 (375)
34 PRK10642 proline/glycine betai 99.9 3.1E-20 6.7E-25 200.7 34.4 175 37-236 16-204 (490)
35 TIGR00710 efflux_Bcr_CflA drug 99.9 3.4E-20 7.4E-25 193.1 33.3 175 36-243 4-178 (385)
36 TIGR00881 2A0104 phosphoglycer 99.9 7.8E-21 1.7E-25 196.7 28.3 151 58-240 15-166 (379)
37 PRK12307 putative sialic acid 99.9 1.8E-20 4E-25 198.5 31.7 165 36-233 17-181 (426)
38 PRK10489 enterobactin exporter 99.9 1.3E-20 2.9E-25 199.3 30.4 356 39-521 19-375 (417)
39 PRK09556 uhpT sugar phosphate 99.9 6.3E-21 1.4E-25 204.9 27.7 152 59-237 50-204 (467)
40 PRK09874 drug efflux system pr 99.9 1.9E-20 4.1E-25 197.0 29.8 355 37-520 14-373 (408)
41 PRK11663 regulatory protein Uh 99.9 3.8E-20 8.1E-25 197.0 32.3 166 39-237 25-190 (434)
42 cd06174 MFS The Major Facilita 99.9 6.6E-20 1.4E-24 187.4 33.0 324 40-519 2-326 (352)
43 PRK10091 MFS transport protein 99.9 5.1E-20 1.1E-24 192.6 31.0 172 37-241 3-174 (382)
44 PRK03633 putative MFS family t 99.9 7.8E-20 1.7E-24 191.1 32.3 158 36-226 5-162 (381)
45 PRK11195 lysophospholipid tran 99.9 7.9E-20 1.7E-24 191.9 31.8 164 37-237 3-166 (393)
46 PRK10077 xylE D-xylose transpo 99.9 2.3E-20 5E-25 200.8 27.9 154 69-242 51-212 (479)
47 PRK03699 putative transporter; 99.9 2.7E-19 5.9E-24 187.9 34.2 173 35-240 5-178 (394)
48 PRK11273 glpT sn-glycerol-3-ph 99.9 1.2E-19 2.6E-24 194.1 31.7 151 58-237 49-200 (452)
49 PRK11652 emrD multidrug resist 99.9 2E-19 4.3E-24 188.7 32.2 171 35-238 6-176 (394)
50 TIGR00897 2A0118 polyol permea 99.9 6E-19 1.3E-23 185.8 35.9 169 34-231 10-179 (402)
51 TIGR00902 2A0127 phenyl propri 99.9 5.9E-19 1.3E-23 184.6 35.5 346 40-521 7-356 (382)
52 TIGR00892 2A0113 monocarboxyla 99.9 6.8E-20 1.5E-24 196.1 28.9 354 61-522 42-397 (455)
53 TIGR00887 2A0109 phosphate:H+ 99.9 5.5E-20 1.2E-24 199.3 28.4 181 36-243 15-223 (502)
54 TIGR00894 2A0114euk Na(+)-depe 99.9 7.1E-20 1.5E-24 196.6 28.9 147 67-243 70-217 (465)
55 PRK15011 sugar efflux transpor 99.9 6.9E-19 1.5E-23 184.8 33.9 174 37-243 15-192 (393)
56 PRK11043 putative transporter; 99.9 5.4E-19 1.2E-23 185.9 32.2 147 64-242 32-178 (401)
57 PLN00028 nitrate transmembrane 99.9 4.9E-19 1.1E-23 190.6 31.8 174 36-243 35-217 (476)
58 PRK15075 citrate-proton sympor 99.9 1.3E-18 2.7E-23 185.2 34.6 171 37-232 15-199 (434)
59 PRK03893 putative sialic acid 99.9 1.9E-19 4.2E-24 194.6 28.5 167 34-233 17-183 (496)
60 PRK15403 multidrug efflux syst 99.9 1.3E-18 2.9E-23 183.9 33.8 147 64-242 42-188 (413)
61 PRK09528 lacY galactoside perm 99.9 5.5E-19 1.2E-23 187.1 29.8 367 37-521 10-379 (420)
62 TIGR00886 2A0108 nitrite extru 99.8 2.9E-19 6.3E-24 185.0 26.4 161 37-229 1-171 (366)
63 PRK10133 L-fucose transporter; 99.8 2.5E-18 5.3E-23 183.1 32.9 154 35-218 24-177 (438)
64 TIGR00879 SP MFS transporter, 99.8 8.8E-19 1.9E-23 187.0 29.5 144 71-243 69-215 (481)
65 TIGR00898 2A0119 cation transp 99.8 5.3E-19 1.2E-23 191.7 28.2 147 62-243 113-262 (505)
66 TIGR00882 2A0105 oligosacchari 99.8 1.7E-18 3.6E-23 181.9 30.7 368 37-521 2-371 (396)
67 COG2271 UhpC Sugar phosphate p 99.8 2.2E-19 4.8E-24 181.0 22.3 179 33-243 21-205 (448)
68 KOG1330 Sugar transporter/spin 99.8 1.5E-20 3.2E-25 191.2 12.5 181 31-244 27-208 (493)
69 TIGR00896 CynX cyanate transpo 99.8 2.2E-18 4.7E-23 178.3 28.4 329 58-523 20-351 (355)
70 PRK11128 putative 3-phenylprop 99.8 1.4E-17 2.9E-22 174.2 34.3 337 46-521 13-356 (382)
71 TIGR00712 glpT glycerol-3-phos 99.8 1.1E-18 2.5E-23 185.8 25.9 153 59-240 48-201 (438)
72 PRK08633 2-acyl-glycerophospho 99.8 6.8E-18 1.5E-22 200.6 34.5 361 36-518 8-382 (1146)
73 PRK10473 multidrug efflux syst 99.8 1.5E-17 3.3E-22 174.3 33.3 169 39-240 5-173 (392)
74 PRK11102 bicyclomycin/multidru 99.8 9.4E-18 2E-22 174.6 31.2 155 54-241 8-162 (377)
75 TIGR00792 gph sugar (Glycoside 99.8 7.2E-18 1.6E-22 179.2 30.3 356 46-522 8-382 (437)
76 PRK06814 acylglycerophosphoeth 99.8 6.2E-18 1.3E-22 200.9 32.7 342 64-519 42-395 (1140)
77 PRK15034 nitrate/nitrite trans 99.8 1.2E-17 2.6E-22 176.0 31.2 178 37-243 34-230 (462)
78 PF05977 MFS_3: Transmembrane 99.8 1.9E-17 4E-22 178.5 32.6 358 39-520 12-369 (524)
79 TIGR00883 2A0106 metabolite-pr 99.8 1.7E-17 3.6E-22 172.7 30.4 156 59-238 14-184 (394)
80 TIGR00889 2A0110 nucleoside tr 99.8 9.5E-17 2.1E-21 169.9 34.0 358 41-523 6-374 (418)
81 TIGR00885 fucP L-fucose:H+ sym 99.8 6.4E-17 1.4E-21 170.7 32.5 173 38-240 4-202 (410)
82 TIGR00901 2A0125 AmpG-related 99.8 3.9E-17 8.5E-22 168.9 29.8 156 57-242 7-175 (356)
83 COG2223 NarK Nitrate/nitrite t 99.8 1E-16 2.2E-21 162.2 28.3 362 35-523 12-378 (417)
84 PRK11010 ampG muropeptide tran 99.8 3.3E-16 7.1E-21 169.2 34.2 177 35-242 10-192 (491)
85 KOG2532 Permease of the major 99.8 2.6E-17 5.6E-22 174.5 24.9 346 67-519 67-418 (466)
86 KOG0254 Predicted transporter 99.8 1.5E-16 3.2E-21 173.0 27.7 136 74-242 90-227 (513)
87 KOG0569 Permease of the major 99.8 4.9E-17 1.1E-21 170.9 21.8 140 75-243 62-203 (485)
88 PF06609 TRI12: Fungal trichot 99.8 1.1E-15 2.4E-20 164.7 30.7 389 58-518 64-465 (599)
89 PRK11902 ampG muropeptide tran 99.7 6.9E-15 1.5E-19 154.9 34.9 167 43-240 5-177 (402)
90 PRK09669 putative symporter Ya 99.7 4.5E-15 9.7E-20 158.5 29.6 178 37-239 9-198 (444)
91 TIGR01301 GPH_sucrose GPH fami 99.7 1.5E-14 3.3E-19 153.6 32.8 405 37-522 4-446 (477)
92 KOG2615 Permease of the major 99.7 6.8E-15 1.5E-19 146.3 25.9 121 66-219 61-181 (451)
93 TIGR00806 rfc RFC reduced fola 99.7 7.4E-15 1.6E-19 152.6 27.2 156 55-244 43-202 (511)
94 TIGR00805 oat sodium-independe 99.7 1.8E-15 4E-20 167.5 24.2 197 36-243 31-279 (633)
95 PRK10429 melibiose:sodium symp 99.7 1.3E-14 2.9E-19 156.1 30.2 368 40-523 9-396 (473)
96 PF03825 Nuc_H_symport: Nucleo 99.7 1.3E-13 2.8E-18 144.4 35.2 351 41-523 6-367 (400)
97 TIGR02718 sider_RhtX_FptX side 99.7 8.8E-14 1.9E-18 145.8 33.8 176 39-243 3-182 (390)
98 PRK09848 glucuronide transport 99.7 4.7E-14 1E-18 150.8 31.6 366 37-522 8-390 (448)
99 PF13347 MFS_2: MFS/sugar tran 99.7 9.2E-15 2E-19 155.3 22.5 359 46-523 10-387 (428)
100 KOG0255 Synaptic vesicle trans 99.7 5.6E-14 1.2E-18 153.2 29.0 140 66-240 111-250 (521)
101 TIGR00788 fbt folate/biopterin 99.6 5.3E-14 1.2E-18 151.0 27.4 384 36-522 24-415 (468)
102 COG0738 FucP Fucose permease [ 99.6 5.7E-13 1.2E-17 134.3 29.3 150 40-219 16-165 (422)
103 PF01306 LacY_symp: LacY proto 99.6 2.1E-13 4.5E-18 141.0 26.8 366 37-522 7-377 (412)
104 COG2807 CynX Cyanate permease 99.6 7.8E-13 1.7E-17 131.5 28.7 346 37-523 12-362 (395)
105 KOG2504 Monocarboxylate transp 99.6 4.5E-13 9.8E-18 143.9 28.3 401 40-523 45-453 (509)
106 PF00083 Sugar_tr: Sugar (and 99.6 7.9E-19 1.7E-23 187.5 -16.8 136 74-238 47-185 (451)
107 KOG3764 Vesicular amine transp 99.6 1.2E-14 2.5E-19 145.4 13.2 149 67-246 100-248 (464)
108 PRK11462 putative transporter; 99.6 2.3E-12 5E-17 138.1 31.9 175 40-238 12-197 (460)
109 PTZ00207 hypothetical protein; 99.6 1E-11 2.2E-16 134.9 35.6 178 34-243 25-204 (591)
110 COG2271 UhpC Sugar phosphate p 99.6 1.2E-14 2.6E-19 147.0 10.4 177 37-242 252-431 (448)
111 KOG0253 Synaptic vesicle trans 99.6 1.1E-12 2.4E-17 129.8 23.1 157 46-236 86-242 (528)
112 KOG0252 Inorganic phosphate tr 99.5 1E-13 2.2E-18 141.1 16.2 144 70-238 81-239 (538)
113 PRK10642 proline/glycine betai 99.5 5E-13 1.1E-17 144.6 17.9 180 35-243 248-428 (490)
114 KOG2533 Permease of the major 99.5 7E-12 1.5E-16 133.7 26.1 148 64-243 72-225 (495)
115 COG2211 MelB Na+/melibiose sym 99.5 3.4E-11 7.4E-16 125.9 30.5 368 36-522 11-398 (467)
116 PRK09556 uhpT sugar phosphate 99.5 4.1E-13 9E-18 144.3 16.0 177 37-243 258-447 (467)
117 PRK15011 sugar efflux transpor 99.5 1.7E-12 3.7E-17 136.3 19.6 176 35-243 214-389 (393)
118 TIGR00883 2A0106 metabolite-pr 99.5 8.4E-13 1.8E-17 137.3 15.2 172 34-234 216-390 (394)
119 PRK09952 shikimate transporter 99.4 2.5E-12 5.5E-17 137.1 17.1 183 34-244 247-432 (438)
120 TIGR00890 2A0111 Oxalate/Forma 99.4 2.3E-12 4.9E-17 133.2 15.7 170 37-237 205-374 (377)
121 PF11700 ATG22: Vacuole efflux 99.4 1.5E-09 3.3E-14 116.1 35.6 67 457-523 379-445 (477)
122 PRK05122 major facilitator sup 99.4 8.6E-12 1.9E-16 131.0 17.0 172 40-246 219-390 (399)
123 PRK03699 putative transporter; 99.4 9.8E-12 2.1E-16 130.6 16.7 169 37-238 205-373 (394)
124 TIGR00893 2A0114 d-galactonate 99.4 1.3E-11 2.8E-16 128.1 17.1 177 37-242 215-396 (399)
125 TIGR00899 2A0120 sugar efflux 99.4 1.5E-11 3.3E-16 127.5 17.3 168 43-243 205-372 (375)
126 PF03209 PUCC: PUCC protein; 99.4 9E-10 1.9E-14 112.4 29.2 345 64-522 6-365 (403)
127 PRK11551 putative 3-hydroxyphe 99.4 1.1E-11 2.3E-16 130.6 15.5 171 39-242 222-393 (406)
128 cd06174 MFS The Major Facilita 99.4 2.4E-11 5.1E-16 124.0 17.4 174 37-242 175-349 (352)
129 PRK11273 glpT sn-glycerol-3-ph 99.4 6E-12 1.3E-16 134.7 13.4 178 37-243 253-433 (452)
130 PRK09705 cynX putative cyanate 99.4 3.8E-11 8.2E-16 126.1 19.2 176 37-246 205-382 (393)
131 TIGR00889 2A0110 nucleoside tr 99.3 7.8E-12 1.7E-16 132.5 13.7 177 39-244 210-401 (418)
132 PRK11663 regulatory protein Uh 99.3 2.7E-11 5.9E-16 129.0 17.3 178 37-243 243-422 (434)
133 PRK09528 lacY galactoside perm 99.3 6.2E-12 1.3E-16 133.2 11.7 163 47-241 233-399 (420)
134 PRK03893 putative sialic acid 99.3 5.4E-11 1.2E-15 128.7 17.9 148 55-232 293-440 (496)
135 TIGR01299 synapt_SV2 synaptic 99.3 3.1E-11 6.8E-16 134.9 16.3 134 77-243 599-732 (742)
136 TIGR00891 2A0112 putative sial 99.3 2.5E-11 5.3E-16 127.1 14.7 160 39-229 240-400 (405)
137 PRK09874 drug efflux system pr 99.3 8E-11 1.7E-15 123.8 18.2 166 46-243 228-396 (408)
138 TIGR00902 2A0127 phenyl propri 99.3 6.5E-11 1.4E-15 123.9 17.3 171 37-242 205-376 (382)
139 PRK12382 putative transporter; 99.3 4.3E-11 9.3E-16 125.5 15.3 162 47-243 226-387 (392)
140 PRK03545 putative arabinose tr 99.3 1.5E-10 3.2E-15 121.4 19.3 172 39-243 207-378 (390)
141 PRK15075 citrate-proton sympor 99.3 6.2E-11 1.3E-15 126.2 16.3 153 43-224 244-398 (434)
142 TIGR00712 glpT glycerol-3-phos 99.3 7.4E-11 1.6E-15 125.8 16.8 177 37-243 251-431 (438)
143 PRK10406 alpha-ketoglutarate t 99.3 1.1E-10 2.4E-15 124.1 17.3 177 37-243 242-422 (432)
144 PRK03633 putative MFS family t 99.3 1.2E-10 2.5E-15 121.8 16.9 156 51-242 214-369 (381)
145 TIGR00897 2A0118 polyol permea 99.3 1.8E-10 4E-15 121.3 18.5 176 37-242 222-398 (402)
146 TIGR00892 2A0113 monocarboxyla 99.3 1.1E-10 2.3E-15 125.2 16.5 172 37-240 241-416 (455)
147 PRK10489 enterobactin exporter 99.3 1E-10 2.3E-15 123.7 16.0 159 53-243 239-397 (417)
148 TIGR00880 2_A_01_02 Multidrug 99.2 2E-11 4.3E-16 107.2 8.3 132 80-243 5-136 (141)
149 TIGR00879 SP MFS transporter, 99.2 2.2E-10 4.9E-15 122.1 16.9 167 55-243 302-468 (481)
150 COG2270 Permeases of the major 99.2 4.5E-09 9.7E-14 107.1 25.0 88 422-523 319-406 (438)
151 COG2223 NarK Nitrate/nitrite t 99.2 2.8E-10 6.1E-15 115.7 15.5 184 36-245 217-401 (417)
152 TIGR00881 2A0104 phosphoglycer 99.2 5.9E-11 1.3E-15 122.7 10.9 162 37-227 216-379 (379)
153 KOG2563 Permease of the major 99.2 1E-09 2.2E-14 112.3 19.1 138 59-221 66-203 (480)
154 PRK11010 ampG muropeptide tran 99.2 6.6E-10 1.4E-14 120.2 18.2 179 39-245 224-403 (491)
155 KOG4686 Predicted sugar transp 99.2 6.7E-11 1.5E-15 113.3 9.0 137 58-222 64-200 (459)
156 COG2814 AraJ Arabinose efflux 99.2 7.9E-10 1.7E-14 113.4 17.5 177 37-246 211-387 (394)
157 TIGR01272 gluP glucose/galacto 99.2 6.2E-10 1.3E-14 113.0 16.5 162 37-233 140-303 (310)
158 KOG2816 Predicted transporter 99.1 3.8E-09 8.2E-14 112.0 21.3 366 37-533 21-400 (463)
159 PLN00028 nitrate transmembrane 99.1 1.3E-09 2.8E-14 117.5 18.2 174 38-245 253-433 (476)
160 PF11700 ATG22: Vacuole efflux 99.1 1.4E-09 3E-14 116.5 17.8 184 36-245 280-468 (477)
161 PRK10504 putative transporter; 99.1 1.5E-09 3.3E-14 116.6 17.6 158 37-223 261-418 (471)
162 KOG4686 Predicted sugar transp 99.1 1E-09 2.2E-14 105.3 14.1 163 37-233 264-430 (459)
163 PRK11128 putative 3-phenylprop 99.1 1.5E-09 3.3E-14 113.5 17.0 169 37-240 205-374 (382)
164 TIGR01272 gluP glucose/galacto 99.1 8.7E-09 1.9E-13 104.6 21.8 84 150-239 8-107 (310)
165 PRK15402 multidrug efflux syst 99.1 3.7E-09 8E-14 111.4 19.8 173 37-237 215-387 (406)
166 PRK12307 putative sialic acid 99.1 1.9E-09 4E-14 114.3 17.6 149 49-228 243-391 (426)
167 TIGR00894 2A0114euk Na(+)-depe 99.1 1.2E-09 2.6E-14 117.3 16.2 178 36-243 260-448 (465)
168 KOG2325 Predicted transporter/ 99.1 7.5E-10 1.6E-14 116.2 13.8 194 26-247 23-231 (488)
169 TIGR00882 2A0105 oligosacchari 99.1 9.4E-10 2E-14 115.5 14.6 171 37-239 215-389 (396)
170 TIGR02332 HpaX 4-hydroxyphenyl 99.1 1E-09 2.2E-14 116.1 14.3 165 37-233 242-409 (412)
171 TIGR00900 2A0121 H+ Antiporter 99.1 3.4E-10 7.3E-15 116.5 10.4 155 37-222 210-365 (365)
172 TIGR00895 2A0115 benzoate tran 99.1 6.6E-10 1.4E-14 115.7 12.1 148 37-217 250-397 (398)
173 TIGR02718 sider_RhtX_FptX side 99.1 5E-09 1.1E-13 109.8 17.2 174 39-239 210-385 (390)
174 PRK10091 MFS transport protein 99.0 5.8E-09 1.3E-13 109.1 17.4 169 39-240 201-371 (382)
175 PRK10133 L-fucose transporter; 99.0 7.4E-09 1.6E-13 110.4 17.0 164 39-237 260-425 (438)
176 TIGR00711 efflux_EmrB drug res 99.0 2.7E-09 5.8E-14 114.9 13.5 157 37-221 255-411 (485)
177 PRK10054 putative transporter; 99.0 5.1E-09 1.1E-13 110.1 14.7 174 37-242 206-381 (395)
178 TIGR00887 2A0109 phosphate:H+ 99.0 4.6E-09 9.9E-14 114.1 14.8 169 43-240 294-484 (502)
179 TIGR00792 gph sugar (Glycoside 99.0 2.8E-09 6.1E-14 113.2 12.7 162 37-224 222-384 (437)
180 PRK14995 methyl viologen resis 99.0 4.8E-09 1E-13 113.7 14.5 155 37-220 259-413 (495)
181 PRK10077 xylE D-xylose transpo 99.0 1.7E-08 3.8E-13 108.5 18.8 157 58-243 292-455 (479)
182 PF03137 OATP: Organic Anion T 99.0 5.8E-11 1.3E-15 128.7 -0.6 198 41-250 7-255 (539)
183 TIGR00710 efflux_Bcr_CflA drug 99.0 2E-08 4.3E-13 104.5 18.4 164 37-229 206-370 (385)
184 PRK15034 nitrate/nitrite trans 99.0 1.6E-08 3.5E-13 107.1 17.3 184 37-242 252-451 (462)
185 PF05977 MFS_3: Transmembrane 99.0 1.2E-08 2.6E-13 110.5 16.3 172 40-243 221-392 (524)
186 TIGR00896 CynX cyanate transpo 99.0 1E-08 2.3E-13 105.9 15.3 156 37-224 197-353 (355)
187 KOG2532 Permease of the major 99.0 6.9E-09 1.5E-13 110.5 13.7 176 37-243 258-445 (466)
188 PF05631 DUF791: Protein of un 99.0 1.6E-07 3.4E-12 94.6 22.3 181 30-243 30-214 (354)
189 PRK11902 ampG muropeptide tran 98.9 3.9E-08 8.5E-13 103.6 18.3 173 39-243 211-388 (402)
190 COG2270 Permeases of the major 98.9 1.6E-08 3.5E-13 103.1 14.5 175 37-243 252-427 (438)
191 PRK10213 nepI ribonucleoside t 98.9 5.3E-08 1.2E-12 102.4 19.0 167 37-237 216-383 (394)
192 PRK11646 multidrug resistance 98.9 2.4E-08 5.1E-13 105.2 15.9 153 55-239 226-382 (400)
193 TIGR00903 2A0129 major facilit 98.9 7.5E-08 1.6E-12 100.3 18.5 167 37-242 192-362 (368)
194 PRK08633 2-acyl-glycerophospho 98.9 3.2E-08 7E-13 118.1 17.6 164 37-232 232-397 (1146)
195 PRK06814 acylglycerophosphoeth 98.8 3.8E-08 8.2E-13 117.5 16.0 184 37-232 225-409 (1140)
196 PRK09848 glucuronide transport 98.8 1.6E-08 3.5E-13 108.1 11.7 163 37-223 228-391 (448)
197 PF03092 BT1: BT1 family; Int 98.8 4.7E-07 1E-11 96.3 22.6 161 58-244 10-174 (433)
198 PF13347 MFS_2: MFS/sugar tran 98.8 8.2E-08 1.8E-12 102.0 16.5 162 37-224 225-388 (428)
199 PF07690 MFS_1: Major Facilita 98.8 8.9E-09 1.9E-13 105.4 8.4 144 39-211 208-352 (352)
200 KOG0569 Permease of the major 98.8 3.5E-08 7.5E-13 104.4 12.8 190 35-248 267-457 (485)
201 KOG3626 Organic anion transpor 98.8 3.2E-07 6.9E-12 100.5 19.6 201 37-248 96-346 (735)
202 PRK11195 lysophospholipid tran 98.8 2.1E-07 4.5E-12 97.8 17.9 155 50-237 218-372 (393)
203 PRK11043 putative transporter; 98.8 3.8E-07 8.2E-12 95.9 19.3 157 40-225 206-362 (401)
204 COG2807 CynX Cyanate permease 98.8 3.2E-07 6.9E-12 91.9 17.1 167 37-235 208-375 (395)
205 TIGR00898 2A0119 cation transp 98.8 8.6E-08 1.9E-12 104.0 13.9 141 67-242 352-492 (505)
206 PRK10473 multidrug efflux syst 98.7 5.1E-07 1.1E-11 94.6 18.9 73 51-124 217-289 (392)
207 KOG2504 Monocarboxylate transp 98.7 4.8E-08 1E-12 105.3 10.9 176 37-245 298-476 (509)
208 TIGR00901 2A0125 AmpG-related 98.7 1.2E-07 2.5E-12 98.0 13.2 145 38-204 210-355 (356)
209 PRK11102 bicyclomycin/multidru 98.7 6.4E-07 1.4E-11 93.1 18.3 150 37-215 194-344 (377)
210 TIGR00886 2A0108 nitrite extru 98.7 5.9E-08 1.3E-12 100.3 10.0 141 37-206 225-365 (366)
211 KOG0253 Synaptic vesicle trans 98.7 3.3E-07 7.1E-12 91.6 14.3 171 39-243 328-517 (528)
212 PF03825 Nuc_H_symport: Nucleo 98.6 8.6E-07 1.9E-11 93.1 16.3 178 39-243 209-393 (400)
213 TIGR00885 fucP L-fucose:H+ sym 98.6 7.2E-07 1.6E-11 94.3 15.4 163 38-235 233-402 (410)
214 PRK09669 putative symporter Ya 98.6 6.2E-07 1.3E-11 95.8 14.8 162 37-224 229-392 (444)
215 PRK10429 melibiose:sodium symp 98.6 2.2E-07 4.9E-12 100.1 11.1 165 37-224 231-397 (473)
216 PRK11652 emrD multidrug resist 98.5 3.9E-06 8.6E-11 87.9 18.3 139 57-225 227-365 (394)
217 PF01306 LacY_symp: LacY proto 98.5 1.1E-06 2.3E-11 91.5 13.2 173 36-240 219-395 (412)
218 COG2211 MelB Na+/melibiose sym 98.4 2.2E-06 4.7E-11 90.2 13.4 163 37-224 236-400 (467)
219 PF06813 Nodulin-like: Nodulin 98.4 1E-05 2.2E-10 78.8 15.9 180 36-244 2-181 (250)
220 PRK15403 multidrug efflux syst 98.4 1.2E-05 2.7E-10 85.0 17.0 170 37-235 218-387 (413)
221 COG0738 FucP Fucose permease [ 98.3 1.8E-05 3.8E-10 80.7 16.3 156 38-228 237-392 (422)
222 PRK11462 putative transporter; 98.3 2.1E-05 4.5E-10 84.6 17.5 158 39-223 230-390 (460)
223 KOG3762 Predicted transporter 98.3 3.7E-05 8.1E-10 80.8 16.9 111 385-520 411-522 (618)
224 KOG4332 Predicted sugar transp 98.3 1.4E-05 3.1E-10 76.6 12.6 153 62-242 61-217 (454)
225 PF01770 Folate_carrier: Reduc 98.2 0.001 2.2E-08 69.2 25.9 157 56-245 22-182 (412)
226 KOG0637 Sucrose transporter an 98.2 4.9E-06 1.1E-10 85.7 8.8 167 37-217 32-202 (498)
227 TIGR00924 yjdL_sub1_fam amino 98.2 2.7E-05 5.9E-10 84.0 14.5 180 42-243 277-466 (475)
228 COG0477 ProP Permeases of the 98.2 5.4E-05 1.2E-09 74.4 15.2 144 58-232 23-172 (338)
229 PF00083 Sugar_tr: Sugar (and 98.1 2.3E-08 4.9E-13 106.8 -10.0 182 37-243 252-434 (451)
230 KOG2533 Permease of the major 98.1 6.5E-06 1.4E-10 88.2 8.3 164 37-230 273-441 (495)
231 KOG3098 Uncharacterized conser 98.1 0.00079 1.7E-08 71.1 23.3 103 79-214 56-158 (461)
232 PF12832 MFS_1_like: MFS_1 lik 98.1 2.2E-05 4.7E-10 62.0 8.8 71 41-113 4-74 (77)
233 PF03209 PUCC: PUCC protein; 98.1 0.00012 2.6E-09 75.2 16.3 164 50-241 221-394 (403)
234 TIGR01301 GPH_sucrose GPH fami 98.0 4.9E-05 1.1E-09 81.3 13.1 208 30-247 251-473 (477)
235 TIGR00880 2_A_01_02 Multidrug 98.0 0.00011 2.4E-09 63.8 12.7 107 388-519 6-112 (141)
236 KOG3764 Vesicular amine transp 98.0 6.8E-06 1.5E-10 83.3 4.7 171 40-236 273-445 (464)
237 KOG3762 Predicted transporter 97.9 1.7E-05 3.8E-10 83.2 7.3 173 43-248 377-550 (618)
238 PF02487 CLN3: CLN3 protein; 97.9 0.025 5.4E-07 58.9 30.2 63 457-519 334-396 (402)
239 PRK09584 tppB putative tripept 97.9 0.00018 3.9E-09 78.1 14.9 147 46-215 281-439 (500)
240 TIGR00769 AAA ADP/ATP carrier 97.9 0.014 3.1E-07 62.3 27.7 166 36-218 6-189 (472)
241 PRK10207 dipeptide/tripeptide 97.9 0.00013 2.9E-09 78.9 12.6 146 49-217 281-438 (489)
242 KOG3574 Acetyl-CoA transporter 97.8 0.0064 1.4E-07 61.7 22.9 158 32-213 26-188 (510)
243 TIGR00788 fbt folate/biopterin 97.8 5.1E-05 1.1E-09 81.7 8.4 136 65-222 280-415 (468)
244 KOG0254 Predicted transporter 97.8 0.00039 8.4E-09 75.8 14.5 186 34-239 291-476 (513)
245 PF06963 FPN1: Ferroportin1 (F 97.7 0.078 1.7E-06 56.1 30.4 60 455-514 353-412 (432)
246 KOG1330 Sugar transporter/spin 97.6 7.2E-05 1.6E-09 77.6 5.1 150 342-521 35-184 (493)
247 KOG0252 Inorganic phosphate tr 97.6 0.0001 2.2E-09 76.3 5.8 177 39-243 306-496 (538)
248 TIGR00805 oat sodium-independe 97.5 0.0018 4E-08 72.3 14.5 177 37-220 330-581 (633)
249 TIGR00806 rfc RFC reduced fola 97.3 0.0068 1.5E-07 64.2 15.5 84 419-517 90-173 (511)
250 PF06609 TRI12: Fungal trichot 97.2 0.0038 8.3E-08 68.3 12.7 152 34-215 307-462 (599)
251 KOG2563 Permease of the major 97.2 0.0055 1.2E-07 63.7 13.0 186 37-251 266-456 (480)
252 PF05978 UNC-93: Ion channel r 97.2 0.0073 1.6E-07 54.5 12.4 111 71-214 35-145 (156)
253 PRK15462 dipeptide/tripeptide 97.1 0.0055 1.2E-07 66.0 12.6 85 422-519 77-163 (493)
254 KOG2615 Permease of the major 96.9 0.0087 1.9E-07 60.9 11.0 152 38-220 261-414 (451)
255 PRK03612 spermidine synthase; 96.9 0.055 1.2E-06 58.9 18.0 176 37-243 17-196 (521)
256 PTZ00207 hypothetical protein; 96.8 0.0061 1.3E-07 66.9 10.1 174 37-245 353-552 (591)
257 PF06779 DUF1228: Protein of u 96.6 0.023 5.1E-07 45.4 9.5 66 60-126 14-79 (85)
258 KOG2816 Predicted transporter 96.6 0.0094 2E-07 63.7 9.5 152 34-218 237-390 (463)
259 TIGR00926 2A1704 Peptide:H+ sy 96.5 0.47 1E-05 53.2 22.7 313 68-443 15-337 (654)
260 KOG2325 Predicted transporter/ 96.4 0.012 2.7E-07 62.5 9.0 199 30-239 255-469 (488)
261 KOG3626 Organic anion transpor 96.4 0.063 1.4E-06 59.7 14.5 178 37-220 392-649 (735)
262 PF13000 Acatn: Acetyl-coenzym 96.1 1.4 3.1E-05 46.9 22.0 63 459-521 406-468 (544)
263 PF03137 OATP: Organic Anion T 96.0 0.0017 3.6E-08 71.0 0.0 177 39-221 307-515 (539)
264 KOG0255 Synaptic vesicle trans 96.0 0.15 3.3E-06 55.5 15.0 144 39-219 324-467 (521)
265 PF05978 UNC-93: Ion channel r 95.9 0.3 6.5E-06 44.1 14.0 86 419-519 65-150 (156)
266 KOG0637 Sucrose transporter an 95.1 0.17 3.6E-06 53.0 10.6 162 339-515 34-200 (498)
267 PF02487 CLN3: CLN3 protein; 94.0 0.31 6.6E-06 50.9 9.6 145 41-218 251-395 (402)
268 PF06963 FPN1: Ferroportin1 (F 93.7 1.3 2.9E-05 46.9 13.9 149 42-214 263-412 (432)
269 PF03219 TLC: TLC ATP/ADP tran 93.6 3.4 7.4E-05 44.6 16.9 169 35-219 22-205 (491)
270 KOG3098 Uncharacterized conser 92.6 1.6 3.5E-05 46.4 12.4 135 67-215 272-409 (461)
271 KOG4332 Predicted sugar transp 91.3 1.2 2.6E-05 43.6 8.8 175 37-241 249-427 (454)
272 KOG3097 Predicted membrane pro 91.0 2.8 6.2E-05 42.3 11.2 117 33-183 25-141 (390)
273 KOG3880 Predicted small molecu 89.0 27 0.0006 35.2 16.9 39 477-515 361-399 (409)
274 TIGR00939 2a57 Equilibrative N 88.9 1.3 2.8E-05 47.2 7.7 153 37-213 269-427 (437)
275 COG3104 PTR2 Dipeptide/tripept 88.1 4.3 9.3E-05 43.3 10.7 81 150-236 392-478 (498)
276 COG3202 ATP/ADP translocase [E 87.5 44 0.00096 35.8 27.6 170 36-220 26-210 (509)
277 PF03092 BT1: BT1 family; Int 86.7 3.6 7.7E-05 43.8 9.5 86 424-520 62-150 (433)
278 PF06813 Nodulin-like: Nodulin 86.5 3.4 7.5E-05 40.4 8.5 91 419-517 64-154 (250)
279 COG0477 ProP Permeases of the 85.4 11 0.00025 36.0 11.8 64 457-520 93-158 (338)
280 KOG1479 Nucleoside transporter 84.8 55 0.0012 34.3 25.2 59 456-514 341-399 (406)
281 PF07672 MFS_Mycoplasma: Mycop 84.3 37 0.0008 33.3 14.1 57 192-248 4-65 (267)
282 PF00854 PTR2: POT family; In 83.1 6.3 0.00014 40.8 9.3 93 422-519 2-97 (372)
283 COG5336 Uncharacterized protei 80.6 5.3 0.00011 33.1 5.8 40 81-120 50-89 (116)
284 PF01733 Nucleoside_tran: Nucl 78.3 0.62 1.3E-05 47.2 -0.3 150 36-213 142-303 (309)
285 PF01770 Folate_carrier: Reduc 77.6 34 0.00073 36.1 12.2 98 72-199 284-381 (412)
286 PF05631 DUF791: Protein of un 75.7 1E+02 0.0022 31.7 15.9 109 385-519 74-188 (354)
287 KOG1479 Nucleoside transporter 75.4 5.6 0.00012 41.5 5.7 129 36-185 241-376 (406)
288 TIGR00939 2a57 Equilibrative N 68.7 1.7E+02 0.0036 31.2 28.4 62 457-518 371-432 (437)
289 KOG3810 Micronutrient transpor 64.5 99 0.0022 31.9 11.5 51 455-505 323-373 (433)
290 TIGR00769 AAA ADP/ATP carrier 63.8 2.2E+02 0.0047 30.8 15.7 61 460-520 130-191 (472)
291 PF09527 ATPase_gene1: Putativ 57.0 42 0.0009 24.1 5.7 37 80-116 7-43 (55)
292 PF07672 MFS_Mycoplasma: Mycop 53.9 75 0.0016 31.2 8.5 30 79-108 147-176 (267)
293 KOG3574 Acetyl-CoA transporter 44.1 1.1E+02 0.0023 32.1 8.1 50 170-225 387-436 (510)
294 KOG4830 Predicted sugar transp 43.3 36 0.00078 33.4 4.4 62 44-107 24-94 (412)
295 TIGR02230 ATPase_gene1 F0F1-AT 39.7 94 0.002 25.7 5.7 31 84-114 53-83 (100)
296 PF13000 Acatn: Acetyl-coenzym 35.4 3.7E+02 0.008 29.3 10.8 59 158-222 411-469 (544)
297 PF06645 SPC12: Microsomal sig 32.7 90 0.002 24.3 4.4 42 198-242 12-53 (76)
298 COG3086 RseC Positive regulato 23.7 3.2E+02 0.007 24.2 6.6 41 68-109 67-107 (150)
299 TIGR02230 ATPase_gene1 F0F1-AT 21.6 3.4E+02 0.0073 22.5 6.0 24 199-222 48-71 (100)
300 PF11947 DUF3464: Protein of u 21.2 4.6E+02 0.01 23.5 7.3 49 152-209 97-145 (153)
301 PRK02237 hypothetical protein; 20.8 2.1E+02 0.0045 24.0 4.6 50 73-123 56-105 (109)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-45 Score=396.98 Aligned_cols=503 Identities=42% Similarity=0.694 Sum_probs=450.7
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHH
Q 008953 32 KHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFG 111 (547)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~ 111 (547)
.+..|+....++..+.++++++|++..++..|++.++|.+...+.-.+..+.+...+.++++++++|.|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953 112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK 191 (547)
Q Consensus 112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 191 (547)
++..+|..++..++.++.+.++.|......++|+..+......++.++.+.++|.|+.+|...++.+|++++..+.+++.
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 99999999999999999998887733333346777788888899999999999999999999999999999777777766
Q ss_pred cccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhh
Q 008953 192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLK 271 (547)
Q Consensus 192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (547)
+.+.++++++..++|..++-.+..|++++.+|.+.|.++.+++.+++++++...+.++++++.++|...+.++++.+.++
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k 271 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK 271 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCC--CCCCCCCccccchhHHHHHHHHhHHHHHHHH
Q 008953 272 RKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGT--NKKESPWRLCTVTQVEQVKVLISVVPIFACT 349 (547)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (547)
++...+.+++.. .+...+.....+.+.++++|.+.++..... ....++|++++.+++++.|+.++.++++.+.
T Consensus 272 ~~~~~~~~~~~~-----~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~ 346 (571)
T KOG1237|consen 272 RKAVVSLDPEEL-----YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTT 346 (571)
T ss_pred HhccCCCcchhc-----cccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHH
Confidence 988777664433 011111122233566788888877643221 3456789999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhccccCCCc-ceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHH
Q 008953 350 IIFNTILAQLQTFSVQQGSAMNNKLTKN-FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL 428 (547)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~ 428 (547)
+.++.++.|+.+.++.|+..|+++++ + +.+|++.++.+..+..++..|+++++.+|+.+|..+++.++++..++.+|+
T Consensus 347 i~~~~~~aq~~t~~v~Q~~~mdr~~~-~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~ 425 (571)
T KOG1237|consen 347 IIYSTVYAQMVTFFVLQATTMDRHLG-SNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGL 425 (571)
T ss_pred HHHHHHHHhhhhheehhhhhcCCCCC-CCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccc
Confidence 99999999999999999999999998 6 899999999999999999999999999999999999877789999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC---CCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 008953 429 FLATFSMISAALMEKKRRDSALD---SGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSF 505 (547)
Q Consensus 429 ~l~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~ 505 (547)
++..+++...+..|.+|.+...+ ...+.+++|++++++++|++|.+..++..++.++++|++||+.+++++.+...+
T Consensus 426 ~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~ 505 (571)
T KOG1237|consen 426 VLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAV 505 (571)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877654 346899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCC-CCCCCccccccc
Q 008953 506 GFYLSSLLVSFVNKVTSSSSNRGWLS-ENDLSTKTGLIF 543 (547)
Q Consensus 506 G~~lg~~i~~~l~~~~~~~~~~~w~~-~~~~~~~~~~~~ 543 (547)
|+.++.+++..+...++. ...|++ +| ||.+|++||
T Consensus 506 G~~lss~Lv~~v~~~t~~--~~~w~~~~~-ln~~~ld~F 541 (571)
T KOG1237|consen 506 GNYLSSVLVSLVQFSTGK--AAEWLGFAN-LNKGRLDYF 541 (571)
T ss_pred HHHHHHHHHHHHHHhcCC--CcccCChhH-hhhhHHHHH
Confidence 999999999999998754 457999 66 999999987
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-39 Score=332.74 Aligned_cols=422 Identities=18% Similarity=0.312 Sum_probs=335.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC----CChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHH
Q 008953 32 KHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMH----FSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTM 107 (547)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg----~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~ 107 (547)
.-++||.++.+..++++|+++||++...+..|+.++++ +|++++..+.+.|....++.++++||++||++|+||++
T Consensus 16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI 95 (498)
T COG3104 16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95 (498)
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 34578999999999999999999999999999999888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc
Q 008953 108 LIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK 187 (547)
Q Consensus 108 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~ 187 (547)
..+.++.++|.+.++.+.. .....++++.++..+|.|+++|+++++++|++|+++++
T Consensus 96 ~lGail~~iGh~~L~~~~~-----------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 96 VLGAILMAIGHLVLAISSV-----------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred HHHHHHHHHHHHHHhcccc-----------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence 9999999999999998630 13456889999999999999999999999999999877
Q ss_pred cccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhH------
Q 008953 188 QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPI------ 261 (547)
Q Consensus 188 ~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------ 261 (547)
|..+++++|++.|+|+.++|.+.+++.+++||...|..+++.+.++++.++..++.....+...++....
T Consensus 153 ----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~ 228 (498)
T COG3104 153 ----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP 228 (498)
T ss_pred ----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence 7788999999999999999999999999999999999999999999999999987766554222211111
Q ss_pred --HHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhH-hhhhhhccccCCCCCCCCCccccchhHHHHHH
Q 008953 262 --AQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRF-LDKACIKVEDGTNKKESPWRLCTVTQVEQVKV 338 (547)
Q Consensus 262 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (547)
..++....... .+. ..+.+..+. +....+.......... .+ .++.+ ++|+|
T Consensus 229 ~~~~~~~~~~~~~--------~~~--------------~l~~~~~~~~~~~~~i~~~~~~~~~~--~~-~~~~~-~er~r 282 (498)
T COG3104 229 VLGGLVVMILAAL--------LTL--------------LLNQNTFSGVLLVISILIAIIYFAEA--FR-SPKVF-DERRR 282 (498)
T ss_pred hHHHHHHHHHHHH--------HHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH--hc-cCccH-HHHHH
Confidence 01111111100 000 000000000 0000000000000000 00 12223 78899
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc-cCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCC
Q 008953 339 LISVVPIFACTIIFNTILAQLQTFSVQQGSAMNN-KLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESG 417 (547)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~ 417 (547)
.+..+.++++...||+.+.|+++.+..++..+.+ +.. |+.++++++|++|++.+++++|+.+++++++.++. ++
T Consensus 283 ~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~--- 357 (498)
T COG3104 283 LLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ--- 357 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---
Confidence 9999999999999999999999866665554443 434 78899999999999999999999999999876665 23
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHH
Q 008953 418 ISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTA 497 (547)
Q Consensus 418 ~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g 497 (547)
.+++.++.+|+++++.+++++....... .+..+.++.+|+++.++++++||.+++|...+++++.+|+...+..+|
T Consensus 358 ps~~~KFalGl~l~g~~fl~l~~~~~~~----~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma 433 (498)
T COG3104 358 PSTPIKFALGLILAGLGFLILLLAGIWF----GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMA 433 (498)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHH
Confidence 3778889999999999999988874431 111457999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008953 498 MTYCSYSFGFYLSSLLVS 515 (547)
Q Consensus 498 ~~~~~~~~G~~lg~~i~~ 515 (547)
++.+.+..|+.++..+.+
T Consensus 434 ~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 434 MWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHHHHhhceecc
Confidence 999999999999988877
No 3
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=2e-35 Score=317.36 Aligned_cols=422 Identities=16% Similarity=0.268 Sum_probs=310.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH
Q 008953 33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF 112 (547)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 112 (547)
++|||.++.++++++++++++|++..+++.|+++++|++..++.++.+.+....++..+++|+++||++||||+++++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999994499999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953 113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL 192 (547)
Q Consensus 113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 192 (547)
++.+++++++++.+ ....++++|+++++|.|+.+|+..++++|++|+++++ |
T Consensus 90 ~~~~g~~~~~~~~~------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~ 141 (489)
T PRK10207 90 VLAIGYFMTGMSLL------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----L 141 (489)
T ss_pred HHHHHHHHHHHhcc------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----h
Confidence 99999999988632 1223567899999999999999999999999987532 6
Q ss_pred ccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeecc--CCCCCCchhHHHHHHH---
Q 008953 193 SSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNK--RPQGSIFTPIAQVFVA--- 267 (547)
Q Consensus 193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--- 267 (547)
++++++++++.|+|.+++|.+++++.++.||++.|+++.+.++++++.+...++.+++. ++++++. |..+.+..
T Consensus 142 ~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~ 220 (489)
T PRK10207 142 DGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLG 220 (489)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHH
Confidence 78899999999999999999999999999999999998776666666666665444332 2222221 21111000
Q ss_pred H--HhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHH
Q 008953 268 A--MLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPI 345 (547)
Q Consensus 268 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (547)
. .-......... . ............+....+. ++..+.+ ..++++.+....+
T Consensus 221 ~~~~~~~~~~~~~~----------------~---~~~~~~~~~~~~i~~~~f~------~~~~~~~-~~~r~r~~~~~~l 274 (489)
T PRK10207 221 SVVMIFVCAWLMHN----------------V---EVANLVLIVLSIVVTIIFF------REAFKLD-KTGRNKMFVAFVL 274 (489)
T ss_pred HHHHHHHHHHHHhh----------------h---hHHHHHHHHHHHHHHHHHH------HHHhcCC-HHHHHHHHHHHHH
Confidence 0 00000000000 0 0000000000000000000 0001111 2335566666667
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhh-hccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHH
Q 008953 346 FACTIIFNTILAQLQTFSVQQGS-AMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRI 424 (547)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i 424 (547)
++..+.+|+.+.|..+....+.. .++.... |+.++++.++++|++..++..|+.+++.+++.+ |+...++..++
T Consensus 275 ~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~----r~~~~~~~~k~ 349 (489)
T PRK10207 275 MLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLGS----KGKDLSMPMKF 349 (489)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhh----CCCCCCcHHHH
Confidence 77889999999998765444333 3455555 788899999999999999999999877654433 33235788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 008953 425 GFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYS 504 (547)
Q Consensus 425 ~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~ 504 (547)
.+|+++.+++++.++...... .+.....+.+++++.+++.++||++.+|+.++++++.+|++++|.++|++++.++
T Consensus 350 ~~G~~l~~~~~~~~~~~~~~~----~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ 425 (489)
T PRK10207 350 TLGMFLCSLGFLTAAAAGMWF----ADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQA 425 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 999999999987765433211 0112246788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 008953 505 FGFYLSSLLVSFVN 518 (547)
Q Consensus 505 ~G~~lg~~i~~~l~ 518 (547)
+|+.+|..+.....
T Consensus 426 ig~~lg~~l~~~~~ 439 (489)
T PRK10207 426 AAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998887553
No 4
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=2.8e-35 Score=312.39 Aligned_cols=417 Identities=17% Similarity=0.255 Sum_probs=311.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953 34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 113 (547)
+|||.++.+++.++++++++|++..+++.|+++++|+++.+++.+.+.+....+++++++|+++||++||||+++++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999976999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
..++.+++....+ ....++++..+..+|.|...++.+++++|++|+++++ |.
T Consensus 86 ~~lg~lll~~~~~------------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~ 137 (493)
T PRK15462 86 MAIGHVVLGASEI------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RD 137 (493)
T ss_pred HHHHHHHHHHhhc------------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----cc
Confidence 9998877664311 1122444555667888888899999999999987433 88
Q ss_pred cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCC-CCCCchh--HHHH------
Q 008953 194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRP-QGSIFTP--IAQV------ 264 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~--~~~~------ 264 (547)
++++++|+..|+|+.++|.+++++.++.||++.|.++++.++++++.++..++.+.+... +.+|.++ ....
T Consensus 138 sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (493)
T PRK15462 138 GGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLL 217 (493)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHH
Confidence 899999999999999999999999999999999999888888888777766655433211 1112111 0000
Q ss_pred HHH----HHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHh-hhhhhc-cccCCCCCCCCCccccchhHHHHHH
Q 008953 265 FVA----AMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFL-DKACIK-VEDGTNKKESPWRLCTVTQVEQVKV 338 (547)
Q Consensus 265 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (547)
+.. ........ + +..... -...+. ...... ....+ ...++|+|
T Consensus 218 ~~~~~~~~~~~~~~~------------------------~-~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~er~r 266 (493)
T PRK15462 218 VLLVATPALITVLFW------------------------K-EWSVYALIVATIIGLGVLAK-----IYRKA-ENQKQRKE 266 (493)
T ss_pred HHHHHHHHHHHHHHH------------------------H-HHHHHHHHHHHHHHHHHHHH-----HHHhc-CCHHHHhh
Confidence 000 00000000 0 000000 000000 000000 00001 12356888
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhh-hhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCC
Q 008953 339 LISVVPIFACTIIFNTILAQLQTF-SVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESG 417 (547)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~ 417 (547)
+...+.++++.+.||+.++|.++. .....+.++.++. |+.+|++++|++|++.+++++|+..+++.++.+| +|.
T Consensus 267 ~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~--~~~-- 341 (493)
T PRK15462 267 LGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG--NRT-- 341 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC--CCC--
Confidence 889999999999999999999874 3334467888888 9999999999999999999999999987654332 122
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHH
Q 008953 418 ISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTA 497 (547)
Q Consensus 418 ~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g 497 (547)
.+...++.+|+++++++++++...... .+++...+.+|++..++++++||.+.+|...+.+++.+|++.||+.+|
T Consensus 342 ~s~~~Kfa~g~~~~g~~f~~l~~~~~~-----~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg 416 (493)
T PRK15462 342 VRIWGKFALGLGLMSAGFCILTLSARW-----SAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTG 416 (493)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHH
Confidence 367788999999999999988775432 122235889999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHH
Q 008953 498 MTYCS-YSFGFYLSSLLVSFVNK 519 (547)
Q Consensus 498 ~~~~~-~~~G~~lg~~i~~~l~~ 519 (547)
++.+. ..+|+.++..+......
T Consensus 417 ~w~l~~~~~~~~~~g~~~~~~~~ 439 (493)
T PRK15462 417 IYMLLSGAIANYLAGVIADQTSQ 439 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99774 46888888777765543
No 5
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=2.6e-34 Score=308.40 Aligned_cols=423 Identities=17% Similarity=0.242 Sum_probs=314.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh--cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953 33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINE--MHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF 110 (547)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~ 110 (547)
.++||.++.+.+.++++++++|++.++++.|++++ +|++..+++.+.+.+.++..++++++|+++||++||||++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 46789999999999999999999999999999987 9999999999999999999999999999999944999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953 111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK 190 (547)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (547)
.++..++.++++++. +...+++++++.++|.|+..|+..++++|++|++++++
T Consensus 86 ~~~~~~g~~~~~~~~-------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~-- 138 (475)
T TIGR00924 86 GIVLMLGHFMLAMSI-------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR-- 138 (475)
T ss_pred HHHHHHHHHHHHhcc-------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc--
Confidence 999999998888752 34457788999999999999999999999999765333
Q ss_pred ccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhH-----HH--
Q 008953 191 KLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPI-----AQ-- 263 (547)
Q Consensus 191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~-- 263 (547)
|+++++++|++.|+|.++||.+++++.++.||++.|+++++.++++++.++..++.+++.++++++..+. .+
T Consensus 139 -r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (475)
T TIGR00924 139 -RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLL 217 (475)
T ss_pred -ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHH
Confidence 7889999999999999999999999999999999999988777777766666665554333222221110 00
Q ss_pred ----HHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHH
Q 008953 264 ----VFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVL 339 (547)
Q Consensus 264 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (547)
.+....+......... ..+ ............. ....... +..+..++++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~------------------~~~-~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~ 271 (475)
T TIGR00924 218 ALLAALALVFFCAWLMHHVV------------------IAN-ILLMTVTLAVIIF--FFRLAFK-----PRLDAVARNKM 271 (475)
T ss_pred HHHHHHHHHHHHHHHHhccH------------------HHH-HHHHHHHHHHHHH--HHHHHHh-----ccCCHHHHhHH
Confidence 0000011000000000 000 0000000000000 0000000 01112233444
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhh-hhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCC
Q 008953 340 ISVVPIFACTIIFNTILAQLQTF-SVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGI 418 (547)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~ 418 (547)
...+.+++..+++|+.+.|+.+. ...+...++..+. ++.+++++++++|++.++++.|+.++++.++.+| ..+.
T Consensus 272 ~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~ 346 (475)
T TIGR00924 272 YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDP 346 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCC
Confidence 45677888899999999998884 4445556777766 7889999999999999999999998765544443 1113
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH
Q 008953 419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM 498 (547)
Q Consensus 419 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~ 498 (547)
+...++.+|+++.+++++.++..... .+++...+++|+++++++.++||.+..|..++++++.+|++.||+++|+
T Consensus 347 ~~~~k~~~G~~l~~~~~~~~~~~~~~-----~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~ 421 (475)
T TIGR00924 347 TTPLKFTLGMLFCGASFLTFAASIWF-----ADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGM 421 (475)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 56667899999999999888765211 1223357999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008953 499 TYCSYSFGFYLSSLLVSFVNK 519 (547)
Q Consensus 499 ~~~~~~~G~~lg~~i~~~l~~ 519 (547)
+.+...+|+.+++.+......
T Consensus 422 ~~l~~~~g~~l~~~~~~~~~~ 442 (475)
T TIGR00924 422 WFLAQAMGSLLGGYLATFGAV 442 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998876544
No 6
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=4.8e-33 Score=300.37 Aligned_cols=415 Identities=14% Similarity=0.242 Sum_probs=305.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953 34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 113 (547)
+++|.++.+++.++++++.+|++..+++.|+++++|++..+++++.+.+........+++|+++||++|||+++.++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999998888777788889999999944999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
..++..+++++.+ ....++++++++++|.|...+...++++|++|+++++ |.
T Consensus 98 ~~ig~~l~~~~~~------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~ 149 (500)
T PRK09584 98 LAIGYALVAWSGH------------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LD 149 (500)
T ss_pred HHHHHHHHHHhcc------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hh
Confidence 9999888887531 2345677888999999999999999999999876432 55
Q ss_pred cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeecc--CCCCCCchhH--H----HHH
Q 008953 194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNK--RPQGSIFTPI--A----QVF 265 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~--~----~~~ 265 (547)
+++++++++.|+|.+++|.+++++.++.||++.|++.++..+++++.++..++..+++ ++++++.+.. . .+.
T Consensus 150 ~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (500)
T PRK09584 150 GAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVV 229 (500)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHH
Confidence 6789999999999999999999999999999999998877777666655544443332 1222222111 0 000
Q ss_pred HHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHH
Q 008953 266 VAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPI 345 (547)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (547)
.......... . ++.. ............. .... ...+. ....++++.+..+.+
T Consensus 230 ~~~~~~~~~~-~-~~~~------------------~~~~~~~~~~~~~-~~~~------~~~~~-~~~~~~~~~~~~~~~ 281 (500)
T PRK09584 230 ALIAIATWLL-H-NQEI------------------ARMALGVVALGIV-VIFG------KEAFA-MKGAARRKMIVAFIL 281 (500)
T ss_pred HHHHHHHHHH-h-cchH------------------HHHHHHHHHHHHH-HHHH------HHHhh-cCHHHHHHHHHHHHH
Confidence 0000000000 0 0000 0000000000000 0000 00011 122345566666777
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh-ccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHH
Q 008953 346 FACTIIFNTILAQLQTFSVQQGSA-MNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRI 424 (547)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i 424 (547)
++..+.||+.+.|+++.+..+... ++..+. |+.+++++++++|++.+++..|+.++++.++ .+| .++.+++
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l----~~r---~~~~~~~ 353 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKM----GDR---LPMPHKF 353 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHh----CcC---CCcHHHH
Confidence 788899999999999877665433 444555 7888999999999999999999998875443 333 3567889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 008953 425 GFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYS 504 (547)
Q Consensus 425 ~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~ 504 (547)
.+|+++++++++.+...... .++.+..+.+|+++++++.++||++.+|...+++++.+|++.||+.+|++.+...
T Consensus 354 ~~G~~l~~l~f~~l~~~~~~-----~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a 428 (500)
T PRK09584 354 AIGMVLCSGAFLVLPLGAKF-----ANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTA 428 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 99999999999988776431 1223457788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008953 505 FGFYLSSLLVSFV 517 (547)
Q Consensus 505 ~G~~lg~~i~~~l 517 (547)
+|+.++..+.+..
T Consensus 429 ~g~~~~g~~~~~~ 441 (500)
T PRK09584 429 GAALIAGYVANLM 441 (500)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887644
No 7
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.96 E-value=1.3e-26 Score=254.11 Aligned_cols=339 Identities=27% Similarity=0.450 Sum_probs=275.2
Q ss_pred HHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 008953 51 MAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQL 130 (547)
Q Consensus 51 ~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~ 130 (547)
+++|++...+..|+++.+|++..++..+...+.....+.++++|+++|+++||++++.++.++..+|..++++++. +..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999998887542 110
Q ss_pred CCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHH
Q 008953 131 KPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVA 210 (547)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~ 210 (547)
.+.......+++.++.++|.|+++|+..+..+|+++++++++ |.++++++|+++|+|+.++
T Consensus 80 ----------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~---~~s~F~~fY~~iNiGSlis 140 (654)
T TIGR00926 80 ----------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSL---RSRFFSFFYFAINAGSLIS 140 (654)
T ss_pred ----------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhH---HHHHHHHHHHHHHHHHHHH
Confidence 011223446678888999999999999999999998754332 8899999999999999999
Q ss_pred HHHHHHhhccc-------chhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccc
Q 008953 211 LTVLVWVQTHS-------GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQML 283 (547)
Q Consensus 211 ~~i~~~l~~~~-------g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (547)
+++.+++.+.. +|..+|.+++++++++++.+...++.++++++.+++.....++++...+++.......
T Consensus 141 ~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~---- 216 (654)
T TIGR00926 141 TIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH---- 216 (654)
T ss_pred HHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc----
Confidence 99999998543 6999999999999999999988888887777777766666666666655443211100
Q ss_pred cccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhh
Q 008953 284 HGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFS 363 (547)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (547)
....+++.+... ...++++++|++++++.+++...++|..+.|..+.+
T Consensus 217 ------------------~~~~~ld~a~~~--------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~ 264 (654)
T TIGR00926 217 ------------------WPLHWLDYAKDK--------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRW 264 (654)
T ss_pred ------------------cchhHHHHhccc--------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 011333332211 223467888999999999999999999999999988
Q ss_pred hhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008953 364 VQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEK 443 (547)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~ 443 (547)
..|...++.+++ ++.+++.+++.++++.++++.|++++.++|..+|.+.+ .++..++.+|++++++++++.+..+.
T Consensus 265 ~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~ 340 (654)
T TIGR00926 265 TLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQL 340 (654)
T ss_pred HHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777 78889999999999999999999998888877665433 57889999999999999999999988
Q ss_pred Hhhhcc
Q 008953 444 KRRDSA 449 (547)
Q Consensus 444 ~~~~~~ 449 (547)
.++...
T Consensus 341 ~~~~~~ 346 (654)
T TIGR00926 341 KVNPTL 346 (654)
T ss_pred HHhccc
Confidence 775433
No 8
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.93 E-value=5.4e-23 Score=222.43 Aligned_cols=402 Identities=11% Similarity=0.006 Sum_probs=240.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
|..+..+++..+......-.+..-+| .+.+++|.+..+.+++.+.|.++..++.++.|+++||+ |||++++++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 34455555555555555544444444 55678999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCC-CCCCccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQF-DQSNPKQSKKLSS 194 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~ 194 (547)
+++++++.+ .+...++++|+++|+|.++..+...+.+.+.+ |+++ |++
T Consensus 83 ~~~~~~~~a-------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~ 131 (495)
T PRK14995 83 LASLAAAFS-------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNM 131 (495)
T ss_pred HHHHHHHHc-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHH
Confidence 999999987 45677999999999999998887777777776 4455 899
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHH-Hhhhc
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAA-MLKRK 273 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 273 (547)
+++++....++|..+||.+++++.++.|||+.|++.....++.++......++.+.++.++.+........... .....
T Consensus 132 ~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~ 211 (495)
T PRK14995 132 ALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYS 211 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998766555554444443333221111111111110000000 00000
Q ss_pred ccCCCCcccccccCCCCCCCCCCccccccchhHhhh-hhhccc---cCCCCCCCCCccccchhHHHHHHHHhHHHHHHHH
Q 008953 274 QICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK-ACIKVE---DGTNKKESPWRLCTVTQVEQVKVLISVVPIFACT 349 (547)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (547)
........+ .......... ...... ..+.....|. .+.+..+++......+..++..
T Consensus 212 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~--~~~~lf~~~~~~~~~~~~~~~~ 272 (495)
T PRK14995 212 AKTALKGFL-----------------SLWVTSLTLLTGALLLGLFIRTQLAASRPM--IDMRLFTHRIILSGVVMAMTAM 272 (495)
T ss_pred HHhccccCC-----------------chHHHHHHHHHHHHHHHHHHHHHhcCCCCC--cCHHHhCCcccHHHHHHHHHHH
Confidence 000000000 0000000000 000000 0000011111 1111112211111111111111
Q ss_pred HHHHHHHhhhhhhhhhhhhhccccCCCcce-eCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHH
Q 008953 350 IIFNTILAQLQTFSVQQGSAMNNKLTKNFH-VPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL 428 (547)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~ 428 (547)
..++......+. +.++ .. |++ ...+.......+...+..++.+++.+ |.++ ++.+..|+
T Consensus 273 ~~~~~~~~~~~~-~lq~------v~--g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~----r~g~-------~~~~~~g~ 332 (495)
T PRK14995 273 ITLVGFELLMAQ-ELQF------VH--GLSPLEAGMFMLPVMVASGFSGPIAGILVS----RLGL-------RLVATGGM 332 (495)
T ss_pred HHHHHHHHHHHH-HHHH------Hc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCc-------hHHHHHHH
Confidence 111111111111 1111 00 111 11122223333445555566555543 4332 24467788
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 008953 429 FLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFY 508 (547)
Q Consensus 429 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~ 508 (547)
++.+++.+.+..... ..+.+......++.|+|.+...++....+.+.+|++.++.+++++++.+.+|+.
T Consensus 333 ~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~ 401 (495)
T PRK14995 333 ALSALSFYGLAMTDF-----------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG 401 (495)
T ss_pred HHHHHHHHHHHHhcC-----------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH
Confidence 888777766554321 234444566778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 008953 509 LSSLLVSFVNKV 520 (547)
Q Consensus 509 lg~~i~~~l~~~ 520 (547)
+|+++.+.+.+.
T Consensus 402 ~G~ai~g~i~~~ 413 (495)
T PRK14995 402 LGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 9
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.92 E-value=1.2e-22 Score=209.26 Aligned_cols=359 Identities=11% Similarity=0.074 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHH
Q 008953 41 FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFIL 120 (547)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l 120 (547)
.++...++..+........+|.|.. +++.++.+.+++.+.+.++..++.++.|+++||+ ||||+++.+.++..++.++
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence 3455566666666666666777775 5899999999999999999999999999999997 9999999998888887777
Q ss_pred HHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhh
Q 008953 121 LSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY 200 (547)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 200 (547)
+......+ ..+...+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+
T Consensus 81 ~~~~~~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 134 (365)
T TIGR00900 81 LPFVALLG--------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQ 134 (365)
T ss_pred HHHHHHcC--------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHH
Confidence 77653211 1256778899999999999999999999999999887 999999999
Q ss_pred hHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCch-hHHHHHHHHHhhhcccCCCC
Q 008953 201 FAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFT-PIAQVFVAAMLKRKQICPSN 279 (547)
Q Consensus 201 ~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 279 (547)
...++|..++|.+++++.++.||++.|++.++..+++.+..+..+.+.+.++ ++++.+ +..+
T Consensus 135 ~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------- 197 (365)
T TIGR00900 135 AVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS-EIQALSNAVLR---------------- 197 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-cccccchhHHH----------------
Confidence 9999999999999999999999999998876665555444443222111100 000000 0000
Q ss_pred cccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHH-HHHHHHHHHHHHHhh
Q 008953 280 PQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVV-PIFACTIIFNTILAQ 358 (547)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 358 (547)
+..+. ++ ...+++ .++... ..+.....+......
T Consensus 198 -------------------------~~~~~---------------~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 232 (365)
T TIGR00900 198 -------------------------DTREG---------------IK----FVLKNP-LLRTLLLLALLFNLVFAPAIVA 232 (365)
T ss_pred -------------------------HHHhH---------------HH----HHHcCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 000111 111111 111111111111111
Q ss_pred hhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008953 359 LQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISA 438 (547)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~ 438 (547)
....+..+....+. ...+.......++.++..++..++ .+|.+ +++.+..+.++.+++....
T Consensus 233 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~-------~~~~~~~~~~~~~~~~~~~ 294 (365)
T TIGR00900 233 LFPYVQSKYLGRGS-------THYGWVLAAFGLGALLGALLLGLL----GRYFK-------RMALMTGAIFVIGLAILVV 294 (365)
T ss_pred HhHHHHHHHhCCch-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHhc-------hhHHHHHHHHHHHHHHHHH
Confidence 11111111000000 011222233334444444444433 33332 2344556666666666655
Q ss_pred HHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 439 ALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 518 (547)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~ 518 (547)
.... + +.+.+.+..++.+++.+...+...++..|..|++.|+++.|+.++...+|..+++.+.+.+.
T Consensus 295 ~~~~------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 295 GLTP------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred Hhhc------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5531 1 35666777889999999999999999999999999999999999999999999999999887
Q ss_pred Hh
Q 008953 519 KV 520 (547)
Q Consensus 519 ~~ 520 (547)
+.
T Consensus 362 ~~ 363 (365)
T TIGR00900 362 DH 363 (365)
T ss_pred HH
Confidence 74
No 10
>PRK12382 putative transporter; Provisional
Probab=99.92 E-value=3.6e-22 Score=209.36 Aligned_cols=351 Identities=10% Similarity=0.021 Sum_probs=229.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
.+.++.+.+..++..+......+.+|.|+.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||.+..+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG 92 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence 35566777777777777777788899999999999999999999999999999999999999997 99999999887766
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.+........+. ....+...++++|+++|++.+...+...+++.|.+|+++ |+++
T Consensus 93 ~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a 149 (392)
T PRK12382 93 LAGLAYLLAAILPV-----------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKV 149 (392)
T ss_pred HHHHHHHhhhcccc-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchh
Confidence 65543332211110 001356778999999999999888888888899999887 9999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI 275 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (547)
+++...+.++|..++|.+++++.+..||++.+.+..+..++.+. ..+ +.++++++++...
T Consensus 150 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~---------------- 209 (392)
T PRK12382 150 MSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAGERP---------------- 209 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCcccCc----------------
Confidence 99999999999999999999999889999876654433222221 111 1111110000000
Q ss_pred CCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHh-HHHHHHHHHHHHH
Q 008953 276 CPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLIS-VVPIFACTIIFNT 354 (547)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 354 (547)
+..+ ..+..+. .+...+....+..
T Consensus 210 -----------------------------~~~~--------------------------~~~~~~~~~~~~~l~~~~~~~ 234 (392)
T PRK12382 210 -----------------------------SLWS--------------------------VVGLIWKPGLGLALQGVGFAV 234 (392)
T ss_pred -----------------------------hHHH--------------------------HHHHHHHhHHHHHHHHHHHhH
Confidence 0000 0000000 0111111111222
Q ss_pred HHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008953 355 ILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS 434 (547)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~ 434 (547)
.....+.++. + . ++. ..........+..++..++.+++. +|.++| +.+..+..+.+++
T Consensus 235 ~~~~~~~~~~-~-----~----~~~-~~~~~~~~~~~~~~~~~~~~g~l~----~r~g~~-------~~~~~~~~~~~~~ 292 (392)
T PRK12382 235 IGTFVSLYFA-S-----K----GWA-MAGFTLTAFGGAFVLMRVLFGWMP----DRFGGV-------KVAIVSLLVETVG 292 (392)
T ss_pred HHHHHHHHHH-h-----c----CCc-hhHHHHHHHHHHHHHHHHHHHHHH----HhcCCC-------eehHHHHHHHHHH
Confidence 2111111111 1 0 111 011111222233344445555443 344333 3366677777777
Q ss_pred HHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 435 MISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~ 514 (547)
++..... .+.+...+..++.+++.+...+.......+..|+++||++.|+++....+|+.+++.+.
T Consensus 293 ~~~~~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~ 358 (392)
T PRK12382 293 LLLLWLA--------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLA 358 (392)
T ss_pred HHHHHHc--------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665543 13455566778889999988888888889999999999999999999999999999999
Q ss_pred HHHHHhh
Q 008953 515 SFVNKVT 521 (547)
Q Consensus 515 ~~l~~~~ 521 (547)
+++.+..
T Consensus 359 g~l~~~~ 365 (392)
T PRK12382 359 GMLATSF 365 (392)
T ss_pred HHHHHHh
Confidence 9888743
No 11
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.92 E-value=4.2e-22 Score=209.26 Aligned_cols=351 Identities=12% Similarity=0.024 Sum_probs=235.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
.+|++..+++..+...+......+.+|.|+.+++|.++.+.+++.+++.++..++.++.|+++||+ ||||+++.+.++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~ 91 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC 91 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence 357788888889999999888889999999999999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++.+.+.++..... ....+...+++.|+++|++.+...+...+++.|.+|+++ |++
T Consensus 92 ~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 148 (399)
T PRK05122 92 ALSGLLYLLAGLLAA-----------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGR 148 (399)
T ss_pred HHHHHHHHHhhhhhc-----------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hcc
Confidence 887766655421000 000245578899999999999999998888899999887 899
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcc
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQ 274 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (547)
++++.....++|..+++.+++++.++.||++.+++..+..++.++.. ++ .+..++++++..
T Consensus 149 ~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~--------------- 209 (399)
T PRK05122 149 VISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGERL--------------- 209 (399)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCccch---------------
Confidence 99998888899999999999999999999988877554433332221 11 110000000000
Q ss_pred cCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHh-HHHHHHHHHHHH
Q 008953 275 ICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLIS-VVPIFACTIIFN 353 (547)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 353 (547)
++. +..++.+. .....+..+.+.
T Consensus 210 ------------------------------~~~--------------------------~~~~~~~~~~~~~~~~~~~~~ 233 (399)
T PRK05122 210 ------------------------------PFR--------------------------RVLGRVWPYGMGLALASIGFG 233 (399)
T ss_pred ------------------------------hHH--------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 000 00011111 011111112222
Q ss_pred HHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHH
Q 008953 354 TILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATF 433 (547)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i 433 (547)
......+.++..+ +.. ..+.......++.++..++..++ .+|.+ +++.+..+.++.++
T Consensus 234 ~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~~~g~l----~~r~~-------~~~~~~~~~~~~~~ 291 (399)
T PRK05122 234 TIATFITLYYAAR----------GWD-GAALALTLFGVAFVGARLLFGNL----INRLG-------GLRVAIVSLLVEIL 291 (399)
T ss_pred HHHHHHHHHHHHc----------ccc-cchHHHHHHHHHHHHHHHHHHHH----HHHhc-------cHHHHHHHHHHHHH
Confidence 2212222211111 110 01111122223333333444433 33432 33456667777777
Q ss_pred HHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008953 434 SMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLL 513 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i 513 (547)
+.+..... .+.+..++..++.|++.+...+.......+..|++.||+++|+++....+|..+++.+
T Consensus 292 ~~~~~~~~--------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 357 (399)
T PRK05122 292 GLLLLWLA--------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPL 357 (399)
T ss_pred HHHHHHHh--------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665543 2445566677899999998888888888899999999999999999999999999999
Q ss_pred HHHHHHh
Q 008953 514 VSFVNKV 520 (547)
Q Consensus 514 ~~~l~~~ 520 (547)
.+.+.+.
T Consensus 358 ~g~l~~~ 364 (399)
T PRK05122 358 AGLVASW 364 (399)
T ss_pred HHHHHHH
Confidence 9888763
No 12
>PRK03545 putative arabinose transporter; Provisional
Probab=99.92 E-value=1.8e-22 Score=211.66 Aligned_cols=348 Identities=9% Similarity=0.008 Sum_probs=226.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
|..++.+.+..+......+...+.+ +.+.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence 4456666666665545545333334 456778999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.+.+.++ +++..+++.|+++|++.+...+...+++.|.+|+++ |+++
T Consensus 86 ~~~~~~~~~-------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~ 134 (390)
T PRK03545 86 ASHVLSALA-------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQA 134 (390)
T ss_pred HHHHHHHHh-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhH
Confidence 999888886 456778899999999999888888899999999887 9999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI 275 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (547)
+++...+.++|..++|.+++.+.++.|||+.|++.++..++..+..+...++. +++++ .+ .+
T Consensus 135 ~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~----~~~~~-~~-~~------------ 196 (390)
T PRK03545 135 LSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL----PSEHS-GS-LK------------ 196 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCCc-ch-HH------------
Confidence 99999999999999999999999999999999987765555443333322211 11000 00 00
Q ss_pred CCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHH
Q 008953 276 CPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTI 355 (547)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (547)
+.. +..++++........++.....+..
T Consensus 197 --------------------------------~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (390)
T PRK03545 197 --------------------------------SLP--------------------LLFRRPALVSLYLLTVVVVTAHFTA 224 (390)
T ss_pred --------------------------------HHH--------------------HHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 000 0001111111111111112222222
Q ss_pred HhhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008953 356 LAQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS 434 (547)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~ 434 (547)
+...+.+... .. +.+. ..+.+.....+..++...+.+++. +|.++ +.+..+..+.+++
T Consensus 225 ~~~~~~~l~~-------~~--g~s~~~~~~~~~~~~~~~~~g~~~~g~l~----dr~~~--------~~~~~~~~~~~~~ 283 (390)
T PRK03545 225 YSYIEPFVQQ-------VA--GLSENFATLLLLLFGGAGIIGSVLFSRLG----NRHPS--------GFLLIAIALLLVC 283 (390)
T ss_pred HHHHHHHHHH-------hc--CCCccHHHHHHHHHHHHHHHHHHHHHHHh----hccch--------hHHHHHHHHHHHH
Confidence 2222222111 00 1111 112222233334444444444332 33221 2245555555555
Q ss_pred HHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 435 MISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~ 514 (547)
....... ..+.+.+++..++.|++.....+.......+..| +.|++++|+++....+|..+|+.+.
T Consensus 284 ~~~l~~~-------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~ 349 (390)
T PRK03545 284 LLLLLPA-------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLG 349 (390)
T ss_pred HHHHHHH-------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443322 1245566667788888888877888888888877 5789999999999999999999999
Q ss_pred HHHHHhh
Q 008953 515 SFVNKVT 521 (547)
Q Consensus 515 ~~l~~~~ 521 (547)
+++.+..
T Consensus 350 G~~~~~~ 356 (390)
T PRK03545 350 NQVSLHL 356 (390)
T ss_pred HHHHhcc
Confidence 9988743
No 13
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.92 E-value=1.5e-22 Score=213.14 Aligned_cols=349 Identities=10% Similarity=0.113 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953 40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI 119 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 119 (547)
+.+....++...+.+.+.+.++.|+++++|.+..+.+++.+...+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5677888899999999999999999999999999999999999999999999999999997 999999999999999888
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953 120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA 199 (547)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 199 (547)
++... ++.+.+++.|++.|++.+...|...+++.|.+|+++ |++++++.
T Consensus 92 ~~~~~-------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~ 140 (400)
T PRK11646 92 TMAIA-------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLL 140 (400)
T ss_pred HHHHh-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHH
Confidence 88775 345668888999999998888888899999999877 89999999
Q ss_pred hhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCC
Q 008953 200 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSN 279 (547)
Q Consensus 200 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (547)
+...++|..+||.+++++. ..||++.|++.++..++..+......++.+. ++..++ ..+
T Consensus 141 ~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~---~~~---------------- 199 (400)
T PRK11646 141 MMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTP---VRE---------------- 199 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchh---hHH----------------
Confidence 9999999999999999998 6799999998766555443333222221100 000000 000
Q ss_pred cccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 008953 280 PQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQL 359 (547)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (547)
. ++ ...++++.....+ ....++....+.
T Consensus 200 -------------------------~-------------------~~----~~~~~~~~~~~~~----~~~~~~~~~~~~ 227 (400)
T PRK11646 200 -------------------------G-------------------MT----RVLRDKRFVTYVL----TLTGYYMLAVQV 227 (400)
T ss_pred -------------------------H-------------------HH----HHHcCchHHHHHH----HHHHHHHHHHHH
Confidence 0 00 0001111111111 111111111111
Q ss_pred hhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008953 360 QTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAA 439 (547)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~ 439 (547)
...... ..++. + +.....+.+.....+..........+ +.+| | .+.++.+..+..+.+++.+.++
T Consensus 228 ~~~~p~---~~~~~-~-~~~~~~g~l~~~~~~~~~~~~~~~~~----~~~~---r---~~~~~~~~~~~~~~~~~~~~l~ 292 (400)
T PRK11646 228 MLMLPI---MVNDI-A-GSPSAVKWMYAIEACLSLTLLYPIAR----WSEK---R---FRLEHRLMAGLLIMSLSMFPIG 292 (400)
T ss_pred HHhhhh---hHHhh-c-CCchHHHHHHHHHHHHHHHHHHHHHH----HHHH---h---cchhHHHHHHHHHHHHHHHHHH
Confidence 111110 01111 0 00001111212222222211111121 1112 1 1333456777777777777666
Q ss_pred HHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 440 LMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 519 (547)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~ 519 (547)
..+ +.+.+.+..++.+++.+...|...++..+.+|++.||+++|++++...+|..+|+.+.+++.+
T Consensus 293 ~~~--------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 293 MVS--------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred Hhh--------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence 542 344455566778889998889999999999999999999999999999999999999999998
Q ss_pred hhc
Q 008953 520 VTS 522 (547)
Q Consensus 520 ~~~ 522 (547)
.++
T Consensus 359 ~~~ 361 (400)
T PRK11646 359 LGK 361 (400)
T ss_pred HHh
Confidence 764
No 14
>PRK10054 putative transporter; Provisional
Probab=99.92 E-value=8.1e-23 Score=214.73 Aligned_cols=353 Identities=13% Similarity=0.103 Sum_probs=233.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
.+|.++.+....++.....+.+.++++.|+++++|++..+.+++.+.+.++..+..++.|+++||+ |||++++++.+..
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence 356788888899999999999999999999999999999999999999999999999999999996 9999999999888
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++.+++.++. +...+++.+.+.+.+.+...+...++..|.+|+++ |++
T Consensus 84 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~ 132 (395)
T PRK10054 84 ASGFIAIPLVN-------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTK 132 (395)
T ss_pred HHHHHHHHHHh-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHH
Confidence 88888777753 34556667777777777777888888899998877 899
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcc
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQ 274 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (547)
++++.+...++|.+++|.+++++.+ .+|+..|++.++..+++++......++.+ ++++++..+.
T Consensus 133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~--~~~~~~~~~~------------- 196 (395)
T PRK10054 133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE--KAIATETGSV------------- 196 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc--cccccchhhh-------------
Confidence 9999999999999999999998875 68999999877666665443333222211 1110000000
Q ss_pred cCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHH
Q 008953 275 ICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNT 354 (547)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (547)
++.. +..++++.+...+..++.......
T Consensus 197 --------------------------------~~~~--------------------~~~~~~~~~~~~~~~~l~~~~~~~ 224 (395)
T PRK10054 197 --------------------------------WSPS--------------------VLLQDKALLWFTCSGFLASFVSGA 224 (395)
T ss_pred --------------------------------hhhh--------------------hhccCceehHHHHHHHHHHHHHHH
Confidence 0000 000111111111111121212111
Q ss_pred HHhhhhhhhhhhhhhccccCCCcceeCc---ccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHH
Q 008953 355 ILAQLQTFSVQQGSAMNNKLTKNFHVPP---ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLA 431 (547)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~ 431 (547)
.....+.+... ..+ .+... +.+...+.+......+..++ +.+|. ++++.+.+++.+.
T Consensus 225 ~~~~~~~~~~~----~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~g~----~~~~~-------~~~~~l~~~~~~~ 284 (395)
T PRK10054 225 FASCISQYVMV----VAD-----SDFAEKVVAVVLPVNAAMVVSLQYSVGR----RLNAA-------NIRPLMTAGTLCF 284 (395)
T ss_pred hhhhHHHHHHH----hcc-----cchHHHHHHHHHHhhhhheeeehhHHHH----HHccC-------CchhHHHHHHHHH
Confidence 11111111111 000 01111 11112222222222222222 22232 3445577787777
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 008953 432 TFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS 511 (547)
Q Consensus 432 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~ 511 (547)
++++...... ..+.+.+....+++++|++...|...+++.+.+|++.|+++.+..+ ...+|..+||
T Consensus 285 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp 350 (395)
T PRK10054 285 VIGLVGFIFS-------------GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINP 350 (395)
T ss_pred HHHHHHHHHc-------------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHH
Confidence 7777666543 1244445567789999999989999999999999999999998765 5668999999
Q ss_pred HHHHHHHHhh
Q 008953 512 LLVSFVNKVT 521 (547)
Q Consensus 512 ~i~~~l~~~~ 521 (547)
.+.+.+.+..
T Consensus 351 ~~~G~l~~~~ 360 (395)
T PRK10054 351 LVSGVILTTL 360 (395)
T ss_pred HHHHHHHHHc
Confidence 9999998854
No 15
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.92 E-value=5.7e-22 Score=208.21 Aligned_cols=177 Identities=12% Similarity=0.045 Sum_probs=152.2
Q ss_pred CcCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953 31 NKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF 110 (547)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~ 110 (547)
.+|..|+.+..+.+..++.....|.....+|.+ .+++|.++.+.++..+.+.++..++.++.|+++||+ ||||.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~ 91 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF 91 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence 445567777777777777777777766666664 567999999999999999999999999999999996 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953 111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK 190 (547)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (547)
.++..++.+++..+ .+.+.+++.|+++|++.+...+...+++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~----- 141 (394)
T PRK10213 92 AVLLTLSCLLVSFA-------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT----- 141 (394)
T ss_pred HHHHHHHHHHHHHH-------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH-----
Confidence 99999988888775 356779999999999999999999999999999887
Q ss_pred ccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008953 191 KLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~ 240 (547)
|+++.++.....++|..++|.+++++.++.|||+.|++.++..+++++.
T Consensus 142 -~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 142 -VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999876554444333
No 16
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.91 E-value=2.2e-22 Score=216.73 Aligned_cols=396 Identities=12% Similarity=0.074 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 118 (547)
+..+++..++..+.... .....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.++++.++..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTI-VNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 44455555555555444 44445566678999999999999999999999999999999997 99999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA 198 (547)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 198 (547)
++++.+ .+...+++.|+++|++.+...+...+++.|.+|+++ |++++++
T Consensus 82 ~~~~~~-------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~ 130 (485)
T TIGR00711 82 LLCGVA-------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAI 130 (485)
T ss_pred HHHhCc-------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHH
Confidence 988876 346678899999999999999999999999999877 8999999
Q ss_pred hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHH-----HHhhhc
Q 008953 199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVA-----AMLKRK 273 (547)
Q Consensus 199 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 273 (547)
++....+|..++|.+++++.++.+||+.|++.+...++.++......++.+++ +.++. +....... ......
T Consensus 131 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-d~~g~~l~~~~~~~~~~~~ 207 (485)
T TIGR00711 131 WGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENF-DFLGLLLLSVGLGSLLYGL 207 (485)
T ss_pred HHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCC-cHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987665555544443333321111 11111 11111000 000000
Q ss_pred ccCCCCcccccccCCCCCCCCCCccccccchhHhhhhh-hcc---ccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHH
Q 008953 274 QICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKAC-IKV---EDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACT 349 (547)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (547)
.. .....| . +.+......... ... ...+...+.|.. +.+..++++.....+..++..
T Consensus 208 ~~-~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 268 (485)
T TIGR00711 208 SE-GPERGW----F------------DSNEILILSITGLVAIIAFVVWELTDDNPLV--DLRLFKYRNFTIGCVYMSLLG 268 (485)
T ss_pred hh-CCCCCC----C------------CchHHHHHHHHHHHHHHHHHHHHHcCCCCcc--CHHHHcCCChHHHHHHHHHHH
Confidence 00 000000 0 000000000000 000 000000111110 111111111112222222222
Q ss_pred HHHHHHHhhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHH
Q 008953 350 IIFNTILAQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL 428 (547)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~ 428 (547)
..++......+.+... .. ++.. ..+.......++.++..++..++. +|. ++++.+.+|.
T Consensus 269 ~~~~~~~~~~p~~~~~-------~~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l~----~r~-------~~~~~~~~g~ 328 (485)
T TIGR00711 269 LGLYGSFYLLPLYLQQ-------VL--GYTALQAGLHILPVGLAPMLSSPIAGRMG----DKI-------DPRKLVTIGL 328 (485)
T ss_pred HHHHHHHHHHHHHHHH-------hc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH----hhc-------CcHHHHHHHH
Confidence 2222222222222211 11 1111 112233334445555555555543 343 3335577788
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 008953 429 FLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFY 508 (547)
Q Consensus 429 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~ 508 (547)
.+.+++..++..... ...+.+......++.|+|.+...++......+..|+++||+++|+.++.+.+|+.
T Consensus 329 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ 398 (485)
T TIGR00711 329 ILYAVGFYWRAFTFT----------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGS 398 (485)
T ss_pred HHHHHHHHHHhccCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHH
Confidence 888777776652110 1345555666788999999999888888888999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008953 509 LSSLLVSFVNK 519 (547)
Q Consensus 509 lg~~i~~~l~~ 519 (547)
+|+.+.+.+.+
T Consensus 399 ig~~i~g~~~~ 409 (485)
T TIGR00711 399 IGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 17
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.91 E-value=4.8e-22 Score=209.25 Aligned_cols=358 Identities=13% Similarity=0.023 Sum_probs=228.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
+|..+....++.+++.+..+......| .+.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~ 90 (406)
T PRK11551 13 LALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALF 90 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence 345555566666666666665544444 55678999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++.+++.++ .+...+++.|++.|++.+...+...+++.|.+|+++ |++
T Consensus 91 ~~~~~~~~~~-------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 139 (406)
T PRK11551 91 GLFSLATAQA-------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGT 139 (406)
T ss_pred HHHHHHHHHh-------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 8888777775 345678889999999999999999999999999887 899
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcc
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQ 274 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (547)
++++.+...++|..+++.+++.+.+..+|++.|++.++..++..+......++.++.++++++..
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------------- 204 (406)
T PRK11551 140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK--------------- 204 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch---------------
Confidence 99999999999999999999899888899999988665444443333322222111000000000
Q ss_pred cCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHH
Q 008953 275 ICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNT 354 (547)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (547)
..+ ...+.. ++ ..+.++........+.....++.
T Consensus 205 -------------------------~~~--~~~~~~-----------------~~--~~~~~~~~~~~~~~~~~~~~~~~ 238 (406)
T PRK11551 205 -------------------------QRA--PVLRAL-----------------FG--EGRATATLLLWISYFFTLIVLYF 238 (406)
T ss_pred -------------------------hhh--hhHHHH-----------------hh--hhhhhHHHHHHHHHHHHHHHHHH
Confidence 000 000000 00 00001111111111111222222
Q ss_pred HHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008953 355 ILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS 434 (547)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~ 434 (547)
...+.+.+...+ ..+. ...+.......+..++...+..++.+ |.++ ++.+..+.+..+++
T Consensus 239 ~~~~~p~~~~~~--g~s~-------~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~-------~~~~~~~~~~~~~~ 298 (406)
T PRK11551 239 LLNWLPSLLVGQ--GLSR-------SQAGLVQIAFNIGGALGSLLIGALMD----RLRP-------RRVVLLIYAGILAS 298 (406)
T ss_pred HHHHHHHHHHhC--CCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHH----HHhH-------HHHHHHHHHHHHHH
Confidence 222222222111 1110 11122333333444555555555443 4322 23344455555555
Q ss_pred HHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 435 MISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~ 514 (547)
++..... .+.+.+.+..++.+++.....+...++..|.+|++.|+++.|+.+....+|..+++.+.
T Consensus 299 ~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 364 (406)
T PRK11551 299 LAALAAA--------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364 (406)
T ss_pred HHHHHhc--------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence 4444332 23444555667778877777888889999999999999999999999999999999999
Q ss_pred HHHHHh
Q 008953 515 SFVNKV 520 (547)
Q Consensus 515 ~~l~~~ 520 (547)
+.+.+.
T Consensus 365 g~l~~~ 370 (406)
T PRK11551 365 GQLLAL 370 (406)
T ss_pred hhhhcc
Confidence 988764
No 18
>PRK10504 putative transporter; Provisional
Probab=99.91 E-value=5.1e-22 Score=213.39 Aligned_cols=408 Identities=8% Similarity=-0.009 Sum_probs=242.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
.|.+|.+.+..++..+..+.+..++|.+.. ++|.++.+.+++.+.+.++..++.+++|+++||+ ||||+++.+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 467788888888888888888888887775 6999999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.+++.++ .+...+++.|+++|++.+...|...+.+.|.+|+++ |+++
T Consensus 87 ~~~~~~~~~-------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~ 135 (471)
T PRK10504 87 LGSLFCALS-------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAA 135 (471)
T ss_pred HHHHHHHHh-------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHH
Confidence 888777765 345668889999999999999999999999999776 8899
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI 275 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (547)
+++.+...++|..++|.+++++.++.|||+.|++......++.+......++.+.++.+.+...............-...
T Consensus 136 ~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 215 (471)
T PRK10504 136 MTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALD 215 (471)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987665555554444433322211111111100000000000000000
Q ss_pred CCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCC-CCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHH
Q 008953 276 CPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGT-NKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNT 354 (547)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (547)
......+ .................... .+...+....+.+-.++++........++..+.+ .
T Consensus 216 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~ 278 (471)
T PRK10504 216 GSKGLGL----------------SPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGS-G 278 (471)
T ss_pred cCCcCCc----------------chHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHH-H
Confidence 0000000 00000000000000000000 0000000000111111121111111111111111 1
Q ss_pred HHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008953 355 ILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS 434 (547)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~ 434 (547)
.......++..+....+. ...+.......+..+...++..++ .+|++ +++.+..+.++.+++
T Consensus 279 ~~~~~~~~~~~~~~g~~~-------~~~g~~~~~~~~~~~~~~~~~~~l----~~r~g-------~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 279 MLPFMTPVFLQIGLGFSP-------FHAGLMMIPMVLGSMGMKRIVVQV----VNRFG-------YRRVLVATTLGLALV 340 (471)
T ss_pred HHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHcC-------chHHHHHHHHHHHHH
Confidence 111111222111001000 011112222222233333444443 34443 335566677777766
Q ss_pred HHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 435 MISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV 514 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~ 514 (547)
.+++..... ..+.+.+.+..++.|++.++..+..+..+.+.+|++.++.++|+.++.+.+|..+|+.+.
T Consensus 341 ~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 409 (471)
T PRK10504 341 SLLFMLVAL-----------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA 409 (471)
T ss_pred HHHHHhccc-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 665554311 112333445667788999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 008953 515 SFVNKVTS 522 (547)
Q Consensus 515 ~~l~~~~~ 522 (547)
+.+.+..+
T Consensus 410 g~ll~~~g 417 (471)
T PRK10504 410 GLLLGLFG 417 (471)
T ss_pred HHHHHHhh
Confidence 98877643
No 19
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.91 E-value=1.7e-22 Score=224.49 Aligned_cols=156 Identities=15% Similarity=0.063 Sum_probs=131.1
Q ss_pred hHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008953 56 VGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKC 135 (547)
Q Consensus 56 ~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 135 (547)
+...+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++..++.++++++
T Consensus 185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa----------- 252 (742)
T TIGR01299 185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV----------- 252 (742)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 345556677788999999999999999999999999999999996 99999999999999988888876
Q ss_pred CCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHH
Q 008953 136 NMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLV 215 (547)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~ 215 (547)
.++..++++|++.|++.++..+...+++.|.+|++. |++.+++......+|.++++.++.
T Consensus 253 --------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 253 --------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999999999999999999999999877 899999988888999999988766
Q ss_pred Hhhcc-------------cchhhHHHHHHHHHHHHHHHHHH
Q 008953 216 WVQTH-------------SGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 216 ~l~~~-------------~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
++... .+||+.+++.++..+++++..++
T Consensus 313 ~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 313 AIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 55432 35888888877666655554443
No 20
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.91 E-value=4.2e-22 Score=204.44 Aligned_cols=350 Identities=17% Similarity=0.154 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 008953 43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLS 122 (547)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~ 122 (547)
++..++..+........++.++.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++..++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4455666666666666677688899999999999999999999999999999999997 999999999999998866665
Q ss_pred HhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhH
Q 008953 123 VQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA 202 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 202 (547)
++. +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+..
T Consensus 81 ~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~ 129 (352)
T PF07690_consen 81 FAS-------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAG 129 (352)
T ss_dssp HHC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHH
T ss_pred hhh-------------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccch
Confidence 542 33478999999999999999999999999999988 99999999999
Q ss_pred HhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCccc
Q 008953 203 FSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQM 282 (547)
Q Consensus 203 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (547)
.++|..++|.+++++.++.+|++.|++.++..++..+......++.+.++++.++.++.
T Consensus 130 ~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--------------------- 188 (352)
T PF07690_consen 130 FSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE--------------------- 188 (352)
T ss_dssp HHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------------------
T ss_pred hhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc---------------------
Confidence 99999999999999998899999999988777766554333222211111111100000
Q ss_pred ccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHH-hHHHHHHHHHHHHHHHhhhhh
Q 008953 283 LHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLI-SVVPIFACTIIFNTILAQLQT 361 (547)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 361 (547)
.. ...++... .+...+.+.++ .....+.....+.......+.
T Consensus 189 -----------------~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T PF07690_consen 189 -----------------SK-------------------KPKPLKPG-FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPL 231 (352)
T ss_dssp --------------------------------------HHHCCCH--CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cc-------------------cccccccc-cccccccchhhhhhhhhhHHHHHHHHhhcccch
Confidence 00 00000000 01111112112 111111221222222222222
Q ss_pred hhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 008953 362 FSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALM 441 (547)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~ 441 (547)
+. .+....+. ....+.+.....+...+..++.+++. +|.++ ++..........++.+.....
T Consensus 232 ~l-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T PF07690_consen 232 YL-QEVLGFSG------PSQAGLLFSIFGIVGIIGSLLAGRLS----DRFGR-------RRRLLIAILLLILGALGLLLL 293 (352)
T ss_dssp HC-CHHHHCCT------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTC-------HHHHHHHHHHHHHHHHHHCCS
T ss_pred hh-hhccCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCc-------HHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111110 00111222333344444445555443 34322 223444444444434333332
Q ss_pred HHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 008953 442 EKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS 511 (547)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~ 511 (547)
.. ..+..+.....++.|++.+...+...++..+.+|++.||++.|+.++.+++|+.+||
T Consensus 294 ~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 294 PF-----------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HH-----------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 21 124455666778899999999999999999999999999999999999999999986
No 21
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.91 E-value=6.5e-22 Score=205.55 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=120.8
Q ss_pred hHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008953 56 VGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKC 135 (547)
Q Consensus 56 ~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 135 (547)
......+.+++++|.++.+.+++.+.+.+++.++.++.|+++||+ |||+++..+.+....+. ++....
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~-~~~~~~---------- 76 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAA-GRLLDP---------- 76 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH-HHHHHh----------
Confidence 334455566778999999999999999999999999999999997 99987665544444432 222221
Q ss_pred CCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHH
Q 008953 136 NMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLV 215 (547)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~ 215 (547)
.++..+++.|+++|+|.+.. ....+.++|.+|+++ |++++++.+.+.++|..+++.+++
T Consensus 77 --------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~ 135 (368)
T TIGR00903 77 --------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGL 135 (368)
T ss_pred --------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24677999999999999864 455556689999877 999999999999999999999999
Q ss_pred HhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953 216 WVQTHSGMDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 216 ~l~~~~g~~~~f~~~~~~~~~~l~~~~ 242 (547)
++.++.|||+.|++.++..++..+..+
T Consensus 136 ~l~~~~gWr~~f~~~~~l~~~~~~~~~ 162 (368)
T TIGR00903 136 KIYTAGGLQLLIIPIAAVAAAGIILVL 162 (368)
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986665544444333
No 22
>TIGR00895 2A0115 benzoate transport.
Probab=99.91 E-value=1.7e-21 Score=203.21 Aligned_cols=169 Identities=15% Similarity=0.108 Sum_probs=138.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
++.+....+..+...+..+ ......+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 16 WRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFS 93 (398)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHH
Confidence 3444444444444444444 344555666778999999999999999999999999999999997 99999999998888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.+++..+ .+...+++.+++.|++.+...+...+++.|.+|+++ |++.
T Consensus 94 ~~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~ 142 (398)
T TIGR00895 94 VFTLLCALA-------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTA 142 (398)
T ss_pred HHHHHHHHc-------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchh
Confidence 888777765 245568888999999999999999999999999877 8999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG 237 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~ 237 (547)
+++.....++|..+++.+++++.+..||++.|++.++..++.
T Consensus 143 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 184 (398)
T TIGR00895 143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLL 184 (398)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHH
Confidence 999999999999999999999999999999998875444433
No 23
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.90 E-value=2.4e-21 Score=202.87 Aligned_cols=173 Identities=16% Similarity=0.124 Sum_probs=145.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH
Q 008953 33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF 112 (547)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 112 (547)
+.+|+.+..+.+..+...+..+.+.... +.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~ 85 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIV 85 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 4556666677777777777666554444 466788999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953 113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL 192 (547)
Q Consensus 113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 192 (547)
+..++.+++.++ .++..+++.|++.|++.+...+...+++.|.+|+++ |
T Consensus 86 ~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~ 134 (405)
T TIGR00891 86 LFSAGTLACGFA-------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------R 134 (405)
T ss_pred HHHHHHHHHHHh-------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------h
Confidence 888888888775 346668889999999999999999999999999887 8
Q ss_pred ccchhhhhhHHhHhHHHHHHHHHHhhcccc--hhhHHHHHHHHHHHHH
Q 008953 193 SSYFNAAYFAFSTGELVALTVLVWVQTHSG--MDVGFGVSAAAMALGL 238 (547)
Q Consensus 193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g--~~~~f~~~~~~~~~~l 238 (547)
++++++.+...++|..+++.+.+.+.+..+ ||+.|++.++..++.+
T Consensus 135 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887766 9999987655444443
No 24
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.90 E-value=7.6e-21 Score=202.17 Aligned_cols=176 Identities=16% Similarity=0.116 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC---CChhhHHHHHHHH---HHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMH---FSLSNSANIVTNF---IGTVFLLALLGGYLSDSFLGSFWTMLIF 110 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~~~~~~~~i~~~~---~~~~~~~~~~~G~laDr~~Gr~~~~~~~ 110 (547)
+.++...+..+++.+.... ..+..+++.++++ .+..+.+.+.+.+ .++..++.+++|+++||+ ||||++.++
T Consensus 22 ~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~ 99 (432)
T PRK10406 22 WAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHH
Confidence 3344444445555555443 5677778888874 4555444444444 444558999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953 111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK 190 (547)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (547)
.++..++.++++++.+... ........+++.|+++|++.|+..|...+++.|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~----- 157 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYET-----------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR----- 157 (432)
T ss_pred HHHHHHHHHHHhhcCCchh-----------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc-----
Confidence 9999999999888643110 000123468889999999999999999999999999887
Q ss_pred ccccchhhhhhHHhHhHHHHHHHHHHhh--------cccchhhHHHHHHHHHHHH
Q 008953 191 KLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMDVGFGVSAAAMALG 237 (547)
Q Consensus 191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~~g~~~~f~~~~~~~~~~ 237 (547)
|++..+..+...+.|..+++.+...+. ..+|||++|++.++..++.
T Consensus 158 -rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 158 -KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 888888888888888888887755543 2579999999876654443
No 25
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.90 E-value=3.5e-21 Score=196.40 Aligned_cols=352 Identities=12% Similarity=0.062 Sum_probs=246.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH
Q 008953 33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF 112 (547)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 112 (547)
+..+..++.+.+..|+....=+.....+|. +.+++|.+..++|+..+.|..+..++.|+...+.||+ .||++++....
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence 445677888888888888888877776664 5578999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953 113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL 192 (547)
Q Consensus 113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 192 (547)
++.++.++++++ +++..++++|++.++..|.+.+...++.++..|+++ |
T Consensus 87 lFi~~n~l~alA-------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~ 135 (394)
T COG2814 87 LFIVSNLLSALA-------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------R 135 (394)
T ss_pred HHHHHHHHHHHh-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------h
Confidence 999999999998 567889999999999999999999999999999998 9
Q ss_pred ccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhh
Q 008953 193 SSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKR 272 (547)
Q Consensus 193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (547)
+++.++...+..++..+|..++.++.+.+|||..|+..++..+++++..+...|+....++...+.++..+.
T Consensus 136 ~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~-------- 207 (394)
T COG2814 136 GRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRL-------- 207 (394)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHH--------
Confidence 999999999999999999999999999999999999988877777777766555000000111111111100
Q ss_pred cccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHH
Q 008953 273 KQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIF 352 (547)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (547)
.++.+........++.....
T Consensus 208 ------------------------------------------------------------l~~p~v~~~l~~t~l~~~g~ 227 (394)
T COG2814 208 ------------------------------------------------------------LRRPGVLLGLLATFLFMTGH 227 (394)
T ss_pred ------------------------------------------------------------hcCchHHHHHHHHHHHHcch
Confidence 01111112222233333444
Q ss_pred HHHHhhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHH
Q 008953 353 NTILAQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLA 431 (547)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~ 431 (547)
+..|.+...+..+ .. +++. ..++......++.+++..+.+++.| | ++++.+.....++
T Consensus 228 F~~ftYi~P~L~~-------v~--g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~d----r--------~~~~~l~~~~~l~ 286 (394)
T COG2814 228 FALYTYIRPFLES-------VA--GFSVSAVSLVLLAFGIAGFIGNLLGGRLAD----R--------GPRRALIAALLLL 286 (394)
T ss_pred hhhHHhHHHHHHH-------cc--CCCHhHHHHHHHHHHHHHHHHHHHHhhhcc----c--------cchhHHHHHHHHH
Confidence 4444443332221 11 2211 1233334444555555555554432 2 2345566676777
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 008953 432 TFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS 511 (547)
Q Consensus 432 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~ 511 (547)
++.++.+.+.. .+.+..+...++.+++.....+..+.-..+.. ++.++.+++++....++|..+|.
T Consensus 287 a~~~l~l~~~~-------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA 352 (394)
T COG2814 287 ALALLALTFTG-------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGA 352 (394)
T ss_pred HHHHHHHHHhc-------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHH
Confidence 77777766652 34444444545544444444444444444433 46799999999999999999999
Q ss_pred HHHHHHHHh
Q 008953 512 LLVSFVNKV 520 (547)
Q Consensus 512 ~i~~~l~~~ 520 (547)
.+.+.+.+.
T Consensus 353 ~lGG~v~~~ 361 (394)
T COG2814 353 ALGGLVLDA 361 (394)
T ss_pred HHHHHHHHh
Confidence 999998886
No 26
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.90 E-value=9.9e-24 Score=219.84 Aligned_cols=364 Identities=31% Similarity=0.491 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC
Q 008953 104 FWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ 183 (547)
Q Consensus 104 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~ 183 (547)
.|+++++.++..+|.+++.+++..+.. .+......+++++++.++|.|+++|++.++++||+++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~----------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~ 64 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL----------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDE 64 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC----------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSST
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh----------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcc
Confidence 478999999999999998887653331 2223456789999999999999999999999999998
Q ss_pred CCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeecc-CCCCCCchh-H
Q 008953 184 SNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNK-RPQGSIFTP-I 261 (547)
Q Consensus 184 ~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~-~ 261 (547)
+++.+ |.++++++|++.|+|+.+++.+.+++.++.||.+.|.++.+.++++++.++..++.++++ ++.+++..+ .
T Consensus 65 ~~~~~---~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~ 141 (372)
T PF00854_consen 65 DDDSR---RDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFI 141 (372)
T ss_dssp TTTTH---HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--S
T ss_pred cchhh---hhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhH
Confidence 75333 889999999999999999999999999999999999999999999999999999888877 677777776 4
Q ss_pred HHHHHHHHhhhcccCCCCcccccccCCC-CCCCCCCccccccchhHhhhhhhccccCCCCCCCCCcc-ccchhHHHHHHH
Q 008953 262 AQVFVAAMLKRKQICPSNPQMLHGLNQN-NVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRL-CTVTQVEQVKVL 339 (547)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 339 (547)
..++....+++....+....+..+.... ++....... ......... ......|.. ++.++.+..+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~k~~ 210 (372)
T PF00854_consen 142 KLVLVAAFKKRKLAVPKGSSWLDWALFQYSERSIFGII------VFIRAAVIF-----FPEIFFWALFCQVQRVEELKAL 210 (372)
T ss_dssp HHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCCCC------CHHHHHHHH-----CCCHHHHTTTSSTTTHHHCCHH
T ss_pred HHHHHHHHHHhhcccccchHHHHHhhhhhhhhhhhhhh------hhccchhhh-----hhhhhhcccCCccceeeeeeee
Confidence 4455555555544333222222111000 000000000 000000000 000001111 233455566666
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCc-ceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCC
Q 008953 340 ISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN-FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGI 418 (547)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~ 418 (547)
.+.+..+.+.+.++.++.+.......|...++..+. + +.+|+..+++++.+.++++.|+.+++++|+.++ +++ .
T Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~ 285 (372)
T PF00854_consen 211 IRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---P 285 (372)
T ss_dssp HCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT--------
T ss_pred eeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---c
Confidence 777777777788888888888877778777776666 7 789999999999999999999999999998872 222 4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH
Q 008953 419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM 498 (547)
Q Consensus 419 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~ 498 (547)
++..++.+|++++.+++++....+.+|.....+ .+..+.+|.+..+++.+++|.+..+...+..+|.+|++..+..+|+
T Consensus 286 ~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~ 364 (372)
T PF00854_consen 286 SPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQP-CGKVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGI 364 (372)
T ss_dssp --HHHHHHH-HHHHHHHHTTTHHHH---HH-----TT--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccc-cCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHH
Confidence 788899999999999999999888766544432 3344447777999999999999999999988888888777777777
Q ss_pred HHHHH
Q 008953 499 TYCSY 503 (547)
Q Consensus 499 ~~~~~ 503 (547)
+....
T Consensus 365 ~~~~~ 369 (372)
T PF00854_consen 365 WFALS 369 (372)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 27
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.89 E-value=1.1e-20 Score=199.11 Aligned_cols=342 Identities=13% Similarity=0.053 Sum_probs=214.0
Q ss_pred HHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 008953 53 IAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKP 132 (547)
Q Consensus 53 ~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 132 (547)
.....+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||.+.++.++..++.+++..+
T Consensus 29 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~-------- 98 (406)
T PRK15402 29 NDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLA-------- 98 (406)
T ss_pred hhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH--------
Confidence 3333344443 4578999999999999999999999999999999997 99999999998888888887775
Q ss_pred CCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHH
Q 008953 133 PKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALT 212 (547)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~ 212 (547)
++...+++.|++.|++.+...+...+.+.|.+|+++ |.+..++......+|..++|.
T Consensus 99 -----------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~ 155 (406)
T PRK15402 99 -----------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPL 155 (406)
T ss_pred -----------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 345668888999999998888888889999999877 777888887777889999999
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCC
Q 008953 213 VLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVP 292 (547)
Q Consensus 213 i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (547)
+++++.++.+|++.|++.++..++..+..+...++.+++++++.+..+
T Consensus 156 i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 203 (406)
T PRK15402 156 VGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKE-------------------------------- 203 (406)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHH--------------------------------
Confidence 999999988999999887766655554443322221110000000000
Q ss_pred CCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 008953 293 NDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNN 372 (547)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (547)
..+..+ ...++++.+...+...+............+.+.... ...+.
T Consensus 204 -------------~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~g~~~ 250 (406)
T PRK15402 204 -------------LGRDYK-------------------LVLKNRRFVAGALALGLVSLPLLAWIALSPVILISG-EQLSS 250 (406)
T ss_pred -------------HHHHHH-------------------HHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCCH
Confidence 000000 000111111111111111111111111112111110 00000
Q ss_pred cCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 008953 373 KLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDS 452 (547)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~ 452 (547)
. ..+.......++.++..++.+++ .+|. +.++.+.++.++.+++.+........
T Consensus 251 ~-------~~g~~~~~~~~~~~~g~~~~g~l----~~r~-------~~~~~~~~~~~~~~~g~~~~~~~~~~-------- 304 (406)
T PRK15402 251 Y-------EYGLLQVPVFGALIAGNLTLARL----TSRR-------PLRSLIRMGLWPMVAGLLLAALATVI-------- 304 (406)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHH----HHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 0 00111111122333334444433 2342 33455777877777777766654210
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008953 453 GKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 520 (547)
Q Consensus 453 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~ 520 (547)
...+.+++++..++.++|.+...+..+...... ++++||+..+++++.+.+|+.+|+.+.+.+.+.
T Consensus 305 -~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 305 -SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred -ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 022456677788899999999887776665544 458999999999999999999999999987663
No 28
>PRK09952 shikimate transporter; Provisional
Probab=99.89 E-value=4.3e-20 Score=196.73 Aligned_cols=175 Identities=10% Similarity=0.048 Sum_probs=127.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc--CCChhhHHHHH-----HHHHHHHHHHHhhhhHHhhcccchHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEM--HFSLSNSANIV-----TNFIGTVFLLALLGGYLSDSFLGSFWTML 108 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g~~~~~~~~i~-----~~~~~~~~~~~~~~G~laDr~~Gr~~~~~ 108 (547)
+|.++...+..+++.+.........+.++.+++ +.++.+ +++. ++..++..++.++.|+++||+ |||+++.
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~ 98 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHH
Confidence 455566666666666666554444555666655 666653 4442 233445667888899999997 9999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccc
Q 008953 109 IFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQ 188 (547)
Q Consensus 109 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~ 188 (547)
++.++..++.++++++.+... ........+++.|+++|++.|+..+...+++.|.+|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~--- 158 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFST-----------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK--- 158 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHH-----------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC---
Confidence 999999999999998743111 000112357889999999999999999999999999887
Q ss_pred ccccccchhhhhhHHhHhHHHHHHHHHHhh--------cccchhhHHHHHHHHHH
Q 008953 189 SKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMDVGFGVSAAAMA 235 (547)
Q Consensus 189 ~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~~g~~~~f~~~~~~~~ 235 (547)
|+...+....+..+|..++..+..++. .++|||++|++.++..+
T Consensus 159 ---rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 159 ---KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 888888888888888888877766654 35799999998765543
No 29
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.89 E-value=7.9e-21 Score=200.75 Aligned_cols=175 Identities=10% Similarity=-0.021 Sum_probs=145.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
+|+.++.+.+..+++.+....+ ....+.+++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence 4566666666555555555544 4455588999999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++.++++++. +...+++.|++.|++.+...|...+++.|.+|+++ |++
T Consensus 84 ~~~~~~~~~~~-------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~ 132 (412)
T TIGR02332 84 GIASTATMFAT-------------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RAR 132 (412)
T ss_pred HHHHHHHHHhc-------------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHH
Confidence 99999998863 45678899999999999998888888999999877 899
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhc------ccchhhHHHHHHHHHHHHHHHHH
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQT------HSGMDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~------~~g~~~~f~~~~~~~~~~l~~~~ 242 (547)
.+++++...++|..+++.+++++.+ ..|||+.|++.++..++..+..+
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~ 186 (412)
T TIGR02332 133 ANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998863 36899999987666554433333
No 30
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.89 E-value=3.1e-21 Score=200.37 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=135.0
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953 58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM 137 (547)
Q Consensus 58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 137 (547)
....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~------------- 79 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA------------- 79 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------------
Confidence 4445568889999999999999999999999999999999997 99999999999999888888876
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHh
Q 008953 138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV 217 (547)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l 217 (547)
.+...++++|++.|++.+...+...+++.|.+|+++ |++.+++.....++|..++|.+.+++
T Consensus 80 ------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l 141 (399)
T TIGR00893 80 ------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWI 141 (399)
T ss_pred ------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 346778999999999999999999999999999877 89999999999999999999999999
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 218 QTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 218 ~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
.+..+|++.|++.++..++..+..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 142 LIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 98899999999876665554444333
No 31
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.89 E-value=4.7e-21 Score=198.21 Aligned_cols=338 Identities=12% Similarity=0.042 Sum_probs=212.2
Q ss_pred HHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 008953 53 IAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKP 132 (547)
Q Consensus 53 ~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 132 (547)
.|.. ..+.+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~-------- 88 (377)
T TIGR00890 19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA-------- 88 (377)
T ss_pred Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH--------
Confidence 4443 4556778889999999999999999999999999999999997 99999999999999999888887
Q ss_pred CCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHH
Q 008953 133 PKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALT 212 (547)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~ 212 (547)
.+...++++|++.|++.+...+.....+.+.+|+ + |+++.++.....++|..+++.
T Consensus 89 -----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~~~~ 144 (377)
T TIGR00890 89 -----------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K------RGLASGIIIGGYGLGSFILSP 144 (377)
T ss_pred -----------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c------cHHHHHHHHHhcchhHhHHHH
Confidence 3567788999999999988777777777887763 4 788899998888999887776
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCC
Q 008953 213 VLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVP 292 (547)
Q Consensus 213 i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (547)
+.+.+.+..|||+.|++.++..++..+..+...++.++++.+++. + .
T Consensus 145 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-----------~- 191 (377)
T TIGR00890 145 LITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI---------------------E-----------V- 191 (377)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc---------------------c-----------c-
Confidence 777777778999999987766555444333322111100000000 0 0
Q ss_pred CCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 008953 293 NDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNN 372 (547)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (547)
...+.... +..++++.+......+............. ..+. + ..
T Consensus 192 -------~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~-- 235 (377)
T TIGR00890 192 -------SVKDYTVW-----------------------EMLRTPQFWVLYLSFFLNAVSGLLLIGLY-KPYG-Q--SL-- 235 (377)
T ss_pred -------chhhhhHH-----------------------HHHcCccHHHHHHHHHHHhHHHHHHHHHH-HHHH-H--Hc--
Confidence 00000000 00011111111111111111111111101 1111 1 10
Q ss_pred cCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008953 373 KLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALD 451 (547)
Q Consensus 373 ~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~ 451 (547)
+... ..+.+.....+..++..++..++.| |.++| +.+.++.++.+++.+......
T Consensus 236 ----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~-------~~~~~~~~~~~~~~~~~~~~~--------- 291 (377)
T TIGR00890 236 ----GLSDGFLVLAVSISSIFNGGGRPFLGALSD----KIGRQ-------KTMSIVFGISAVGMAAMLFIP--------- 291 (377)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhh-------hhhhHHHHHHHHHHHHHHHcc---------
Confidence 1110 0122233344445555555555544 43322 336667777777766655432
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008953 452 SGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 520 (547)
Q Consensus 452 ~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~ 520 (547)
..+........++.+++.+...+....+..|..|+++|++..|+.+....+|+.+++.+.+.+.+.
T Consensus 292 ---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 357 (377)
T TIGR00890 292 ---MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE 357 (377)
T ss_pred ---cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112222333445667777766666777889999999999999999999999999999999988764
No 32
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.89 E-value=2e-20 Score=196.41 Aligned_cols=340 Identities=14% Similarity=0.069 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 008953 44 GLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSV 123 (547)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~ 123 (547)
++..+.+..++.+.+.+| .+.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++++
T Consensus 16 ~~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~ 93 (393)
T PRK09705 16 LIGLNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMREL 93 (393)
T ss_pred HHHHHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHH
Confidence 333333444455555555 56678999999999999999999999999999999997 9999999999999999999998
Q ss_pred hhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHH
Q 008953 124 QAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAF 203 (547)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 203 (547)
+. ++..++++|+++|+|.+...+...+++.+.+| ++ |+++++++..+.
T Consensus 94 a~-------------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~ 141 (393)
T PRK09705 94 YP-------------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAAL 141 (393)
T ss_pred Cc-------------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHH
Confidence 73 45568889999999999999888899899887 55 888999999999
Q ss_pred hHhHHHHHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCccc
Q 008953 204 STGELVALTVLVWVQTHS-GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQM 282 (547)
Q Consensus 204 ~ig~~~~~~i~~~l~~~~-g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (547)
+.|..+++.+++++.++. +||+.+...++..++.++..+...++ ++.++++ + .
T Consensus 142 ~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------~-~--- 195 (393)
T PRK09705 142 MGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR---EVASSHK-------------------T-T--- 195 (393)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC---CCccccC-------------------C-C---
Confidence 999999999999988875 79988766544444333333221111 1100000 0 0
Q ss_pred ccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhh
Q 008953 283 LHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTF 362 (547)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (547)
. .+.+ ..++++.+...+...+....++....+.+.+
T Consensus 196 -----------------~----------------------~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~ 231 (393)
T PRK09705 196 -----------------T----------------------TPVR-----VVFTPRAWTLGVYFGLINGGYASLIAWLPAF 231 (393)
T ss_pred -----------------c----------------------CCcc-----cccCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0011111111112222333333443444433
Q ss_pred hhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008953 363 SVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALME 442 (547)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~ 442 (547)
..++ ..+. ...+.......++.++..++.+++ .+|.++ ++.+.+++.+.+++...+....
T Consensus 232 l~~~--g~s~-------~~ag~~~~~~~i~~i~g~~~~g~l----~~r~~~-------~~~~~~~~~l~~~~~~~~~~~~ 291 (393)
T PRK09705 232 YIEI--GASA-------QYSGSLLALMTLGQAAGALLMPAM----ARHQDR-------RKLLMLALVLQLVGFCGFIWLP 291 (393)
T ss_pred HHHc--CCCh-------hhhhHHHHHHHHHHHHHHHHHHHH----Hhhccc-------hHHHHHHHHHHHHHHHHHHHcc
Confidence 3211 1111 011222233334444444444433 334332 2446667777666666554331
Q ss_pred HHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008953 443 KKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT 521 (547)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~-p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~ 521 (547)
.+...+ ..++.+++.+...|.......+.. |++.+|+..|+.+....++..+++.+.+++.+.+
T Consensus 292 -------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~ 356 (393)
T PRK09705 292 -------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS 356 (393)
T ss_pred -------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111 234567777777777776767777 4688999999999999999999999999999865
Q ss_pred c
Q 008953 522 S 522 (547)
Q Consensus 522 ~ 522 (547)
+
T Consensus 357 g 357 (393)
T PRK09705 357 G 357 (393)
T ss_pred C
Confidence 4
No 33
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.89 E-value=3.3e-20 Score=192.61 Aligned_cols=169 Identities=14% Similarity=0.058 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHH-HHHHHHHHHHHH
Q 008953 43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLI-FGFVELSGFILL 121 (547)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~-~~~~~~i~~~l~ 121 (547)
++..++..++.....+.++.|+++++|.++.+.+++.+.+.+...+..++.|+++||+ ||||.++. +.+...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3456777777788889999999999999999999999999999999999999999997 99887665 444445566666
Q ss_pred HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc--hhhh
Q 008953 122 SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY--FNAA 199 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~ 199 (547)
+.+ +++..+++.|++.+.+.+...|...++..|..|+++ |... .+..
T Consensus 82 ~~~-------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~ 130 (375)
T TIGR00899 82 AWN-------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVM 130 (375)
T ss_pred Hhc-------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHH
Confidence 664 345567777888877777777777777788776554 4433 5677
Q ss_pred hhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 200 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 200 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+...++|..++|.+++++.+..|||+.|++.++..++..+..+.
T Consensus 131 ~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 131 RAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999999999899999999877765555444433
No 34
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.89 E-value=3.1e-20 Score=200.68 Aligned_cols=175 Identities=12% Similarity=-0.003 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhh-HHH-----HHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSN-SAN-----IVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF 110 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~-~~~-----i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~ 110 (547)
+.++...+..+++.+.+. +..+..+++.++++.+..+ ..+ +.++..++..++.++.|+++||+ |||+++.++
T Consensus 16 ~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~ 93 (490)
T PRK10642 16 KAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAIT 93 (490)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 444555556666655444 4556667888888654422 122 24666788889999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953 111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK 190 (547)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (547)
.+++.+++++++++.++..+ ....+..+++.|+++|++.|+..+...+++.|.+|+++
T Consensus 94 ~~l~~i~~~~~a~~~~~~~~-----------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~----- 151 (490)
T PRK10642 94 IVIMSISTFCIGLIPSYATI-----------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK----- 151 (490)
T ss_pred HHHHHHHHHHHHhcccHHHH-----------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-----
Confidence 99999999999987431110 00111247889999999999999999999999999888
Q ss_pred ccccchhhhhhHHhHhHHHHHHHHHHhh--------cccchhhHHHHHHHHHHH
Q 008953 191 KLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMDVGFGVSAAAMAL 236 (547)
Q Consensus 191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~~g~~~~f~~~~~~~~~ 236 (547)
|++..++...+.++|..+++.+..++. .++|||+.|++.++..++
T Consensus 152 -Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 152 -RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 888888888777788887776654432 257999999986654443
No 35
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.89 E-value=3.4e-20 Score=193.13 Aligned_cols=175 Identities=15% Similarity=0.046 Sum_probs=144.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
+|.++.+.+..+..........+.+| ++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence 34455555555555555554445444 55678999999999999999999999999999999997 99999999999988
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.+++..+ .+...+++.|++.|++.+...+...+++.|.+|+++ |++.
T Consensus 82 ~~~~~~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~ 130 (385)
T TIGR00710 82 LSSLGLALS-------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRI 130 (385)
T ss_pred HHHHHHHHH-------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHH
Confidence 888888776 345668889999999999999999999999999877 8999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+++.+...++|..++|.+++++.++.+|++.|++.++..++..+..+.
T Consensus 131 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 131 YSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999899999998876655555444443
No 36
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.89 E-value=7.8e-21 Score=196.70 Aligned_cols=151 Identities=13% Similarity=0.023 Sum_probs=130.8
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953 58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM 137 (547)
Q Consensus 58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 137 (547)
....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.+++.++.
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 81 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------ 81 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh------------
Confidence 3344577888999999999999999999999999999999997 999999999999999998888863
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHH-HHHHH
Q 008953 138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVAL-TVLVW 216 (547)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~-~i~~~ 216 (547)
+...+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++| .+++.
T Consensus 82 -------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~ 142 (379)
T TIGR00881 82 -------------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFG 142 (379)
T ss_pred -------------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHH
Confidence 45678899999999999999999999999999887 89999999999999999999 57777
Q ss_pred hhcccchhhHHHHHHHHHHHHHHH
Q 008953 217 VQTHSGMDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 217 l~~~~g~~~~f~~~~~~~~~~l~~ 240 (547)
+.+..+|++.|++.++..++..+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~ 166 (379)
T TIGR00881 143 IAELYSWHWVFIVPGIIAIIVSLI 166 (379)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHH
Confidence 777889999998776655444333
No 37
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.89 E-value=1.8e-20 Score=198.52 Aligned_cols=165 Identities=14% Similarity=0.057 Sum_probs=141.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
++.+....+..+...+..+.. .+..+++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~ 94 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 455555566666666665544 5555667788999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.++++++ .+...++++|++.|++.+...+...+++.|.+|+++ |+++
T Consensus 95 ~~~~~~~~~-------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~ 143 (426)
T PRK12307 95 VGTGLSGLA-------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKA 143 (426)
T ss_pred HHHHHHHHH-------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHh
Confidence 999888886 346678999999999999999999999999999887 8999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAA 233 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~ 233 (547)
.++...+.++|.++++.+.+++.+..+||+.|++.+..
T Consensus 144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 99999999999999999999999989999999875443
No 38
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.89 E-value=1.3e-20 Score=199.29 Aligned_cols=356 Identities=13% Similarity=0.075 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 118 (547)
+..+.+..++..+........+|.+. ++++.++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~ 96 (417)
T PRK10489 19 FRAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGF 96 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHH
Confidence 33445556666666655556666665 45788999999999999999999999999999997 99999998877777766
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA 198 (547)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 198 (547)
+++....... .++...+++.|++.|++.+...+...+.+.|.+|+++ |+++.++
T Consensus 97 ~~~~~~~~~~--------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (417)
T PRK10489 97 IGLALNAFLP--------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI 150 (417)
T ss_pred HHHHHHHHcC--------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence 6554321100 1345667788999999888877888888999999877 8889999
Q ss_pred hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCC
Q 008953 199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPS 278 (547)
Q Consensus 199 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (547)
.+...++|..+||.+++++.+..+|++.|++.++..+++.+..+..+ +. ++++++..+..+
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~~~~~~~~~~--------------- 211 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLP-AL---PPPPQPREHPLR--------------- 211 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC-CC---CCCCcccccchH---------------
Confidence 98999999999999999999888999999887666555544443321 11 111000000000
Q ss_pred CcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 008953 279 NPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQ 358 (547)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (547)
+..+. ++ ...+++ .+...+...+...........
T Consensus 212 --------------------------~~~~~---------------~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 245 (417)
T PRK10489 212 --------------------------SLLAG---------------FR----FLLASP-VVGGIALLGGLLTMASAVRVL 245 (417)
T ss_pred --------------------------HHHHH---------------HH----HHHcCh-HHHHHHHHHHHHHHHHhHHHh
Confidence 00000 00 000001 111111111111111111111
Q ss_pred hhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHH
Q 008953 359 LQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMIS 437 (547)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~ 437 (547)
.+.+. +... +.+. ..+.+.....++.++...+.+++ .+|. ++.+.+..+.++.+++++.
T Consensus 246 ~p~~~-------~~~~--g~~~~~~g~~~~~~~~g~~ig~~~~~~l----~~~~-------~~~~~l~~~~~~~~~~~~~ 305 (417)
T PRK10489 246 YPALA-------DEVW--QMGAAQIGLLYAAVPLGAALGALTSGWL----AHSA-------RPGLLMLLSTLGSFLAVGL 305 (417)
T ss_pred hHHHH-------Hhcc--CCChhHhHHHHHHHHHHHHHHHHHHHHh----hhcc-------CcchHHHHHHHHHHHHHHH
Confidence 11111 1111 1111 12223333334444444444433 2221 2233466677777777665
Q ss_pred HHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 438 AALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 517 (547)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l 517 (547)
+... .+.+...+..++.|++.+...+...++..+..|++.||+++|+++..+.+|..+|+.+.+++
T Consensus 306 ~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l 371 (417)
T PRK10489 306 FGLM--------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGL 371 (417)
T ss_pred HHcc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Confidence 5543 24455566777888888888888888999999999999999999999999999999999999
Q ss_pred HHhh
Q 008953 518 NKVT 521 (547)
Q Consensus 518 ~~~~ 521 (547)
.+..
T Consensus 372 ~~~~ 375 (417)
T PRK10489 372 GAMM 375 (417)
T ss_pred HHHh
Confidence 8753
No 39
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.88 E-value=6.3e-21 Score=204.86 Aligned_cols=152 Identities=11% Similarity=-0.019 Sum_probs=125.2
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 008953 59 NLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMV 138 (547)
Q Consensus 59 ~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 138 (547)
...+.+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.++++....
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~------------ 116 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG------------ 116 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh------------
Confidence 345567789999999999999999999999999999999997 9999998888877776666554310
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhh
Q 008953 139 TDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ 218 (547)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~ 218 (547)
....+...+++.|++.|++.+...|...+++.|++|+++ |+++++++..+.++|.++++.+..++.
T Consensus 117 --------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 117 --------SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred --------cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHH
Confidence 001457778999999999999999999999999999988 999999999999999999999887776
Q ss_pred ccc---chhhHHHHHHHHHHHH
Q 008953 219 THS---GMDVGFGVSAAAMALG 237 (547)
Q Consensus 219 ~~~---g~~~~f~~~~~~~~~~ 237 (547)
... +|+..|.+.++..++.
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~ 204 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALII 204 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHH
Confidence 543 5888887766554443
No 40
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.88 E-value=1.9e-20 Score=196.97 Aligned_cols=355 Identities=12% Similarity=0.059 Sum_probs=224.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhh-----HHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSN-----SANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFG 111 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~-----~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~ 111 (547)
|.+..+.+..++..+.+....+.+|.|.+ ++|.+..+ .+++.+.+.+...++.++.|+++||+ |||+.+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence 55666777778888888888888888886 48888665 37888899999999999999999997 9999999998
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953 112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK 191 (547)
Q Consensus 112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 191 (547)
++..++.+++... .+...+++.|++.|++.+ ..+...+.+.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------ 139 (408)
T PRK09874 92 LGMGIVMVLMGLA-------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------ 139 (408)
T ss_pred HHHHHHHHHHHHH-------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------
Confidence 8888888777765 345668889999998765 45677778889998777
Q ss_pred cccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhh
Q 008953 192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLK 271 (547)
Q Consensus 192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (547)
|++..++.+...++|..++|.+++.+.+..+|++.|++.++..++..+..+...++.+. +.++++..+
T Consensus 140 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------- 207 (408)
T PRK09874 140 SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ-PVSKKEMLH----------- 207 (408)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc-cccchhhhH-----------
Confidence 88999999999999999999999999988999999998776655554443332221110 000000000
Q ss_pred hcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHH
Q 008953 272 RKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTII 351 (547)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (547)
..+... .. ++++.....+ .....
T Consensus 208 ----------------------------------~~~~~~---------------~~-----~~~~~~~~~~---~~~~~ 230 (408)
T PRK09874 208 ----------------------------------MREVVT---------------SL-----KNPKLVLSLF---VTTLI 230 (408)
T ss_pred ----------------------------------HHHHHH---------------hC-----cCCchHHHHH---HHHHH
Confidence 000000 00 0000011111 00111
Q ss_pred HHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHH
Q 008953 352 FNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLA 431 (547)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~ 431 (547)
..............+......... ......+.+.....+..++..+..+++. +|.++| +.+..+..+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~l~~~~~~~~~g~l~----dr~g~~-------~~~~~~~~~~ 298 (408)
T PRK09874 231 IQVATGSIAPILTLYVRELAGNVS-NIAFISGMIASVPGVAALLSAPRLGKLG----DRIGPE-------KILITALIFS 298 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccccc-------hhHHHHHHHH
Confidence 111111111111100000000000 0000001111222233344444444443 343322 3455666666
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 008953 432 TFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS 511 (547)
Q Consensus 432 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~ 511 (547)
+++.+..... .+.+.+.+..++.|++.+...|...+...+..|++.||+..++++....+|..+|+
T Consensus 299 ~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp 364 (408)
T PRK09874 299 VLLLIPMSFV--------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGP 364 (408)
T ss_pred HHHHHHHHHh--------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhH
Confidence 5555544443 24455566677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 008953 512 LLVSFVNKV 520 (547)
Q Consensus 512 ~i~~~l~~~ 520 (547)
.+.+.+.+.
T Consensus 365 ~~~G~l~~~ 373 (408)
T PRK09874 365 LMGAAISAN 373 (408)
T ss_pred HHHHHHHhh
Confidence 999988763
No 41
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.88 E-value=3.8e-20 Score=196.96 Aligned_cols=166 Identities=15% Similarity=0.049 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 118 (547)
++..++..++..+..+.....+|.+. +++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~ 102 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIIN 102 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHH
Confidence 33344444444444445555565554 56999999999999999999999999999999997 99999999999999998
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA 198 (547)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 198 (547)
++++.+ .+...+++.|++.|++.|...+...+++.|++|+++ |++++++
T Consensus 103 ~~~~~~-------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~ 151 (434)
T PRK11663 103 ILFGFS-------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAI 151 (434)
T ss_pred HHHHHH-------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHH
Confidence 888876 345667888999999999888888999999999877 8999999
Q ss_pred hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953 199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG 237 (547)
Q Consensus 199 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~ 237 (547)
++...++|..++|.+.+++.+++|||+.|++.++..++.
T Consensus 152 ~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 152 WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876654433
No 42
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.88 E-value=6.6e-20 Score=187.39 Aligned_cols=324 Identities=18% Similarity=0.162 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953 40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI 119 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 119 (547)
+.+.+..++..+..+......+.|.. ++|.+..+.+++.+...++..++.++.|+++||+ ||||.+.++.++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence 34566677778888877777887775 5799999999999999999999999999999997 999999999999999988
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953 120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA 199 (547)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 199 (547)
++... .+...+++.|++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 80 ~~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 128 (352)
T cd06174 80 LLAFA-------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLF 128 (352)
T ss_pred HHHHh-------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHH
Confidence 88876 346678899999999999999999999999999887 99999999
Q ss_pred hhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCC
Q 008953 200 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSN 279 (547)
Q Consensus 200 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (547)
+...++|..++|.+.+++.+..+|++.|++.++..++..+...... +.
T Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~------------------- 176 (352)
T cd06174 129 SAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RL------------------- 176 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HH-------------------
Confidence 9999999999999999999988999999987766655544443311 00
Q ss_pred cccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 008953 280 PQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQL 359 (547)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (547)
.....+..+.............
T Consensus 177 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 198 (352)
T cd06174 177 ----------------------------------------------------------LLLLALAFFLLSFGYYGLLTYL 198 (352)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHhHHHHHHHHH
Confidence 0000111111111112222222
Q ss_pred hhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhH-HHHHHHHHHHHHHHHH
Q 008953 360 QTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQ-RIGFGLFLATFSMISA 438 (547)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~-~i~~g~~l~~i~~~~~ 438 (547)
+...... ...+ ....+.......+...+..++..++. +|.++| + .+..+..+..++.+..
T Consensus 199 ~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~i~~~~~ 259 (352)
T cd06174 199 PLYLQEV-LGLS-------AAEAGLLLSLFGLGGILGALLGGLLS----DRLGRR-------RLLLLIGLLLAALGLLLL 259 (352)
T ss_pred HHHHHHh-cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhh-------hHHHHHHHHHHHHHHHHH
Confidence 2211110 0000 11122333444455555666655543 344333 3 5777888888888777
Q ss_pred HHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 439 ALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 518 (547)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~ 518 (547)
...+ +.+...+..++.+++.+...+...++..|..|+++|++.+|+.+..+.+|+.+++.+.+.+.
T Consensus 260 ~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~ 325 (352)
T cd06174 260 ALAP--------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL 325 (352)
T ss_pred HHhc--------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7642 46667788899999999999999999999999999999999999999999999999999887
Q ss_pred H
Q 008953 519 K 519 (547)
Q Consensus 519 ~ 519 (547)
+
T Consensus 326 ~ 326 (352)
T cd06174 326 D 326 (352)
T ss_pred c
Confidence 6
No 43
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.88 E-value=5.1e-20 Score=192.60 Aligned_cols=172 Identities=9% Similarity=0.032 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.++.+++..+......+...+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 56677777777777777777676655 5678999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+.++++.+ ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~l~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 129 (382)
T PRK10091 81 GNAMFTLS-------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAV 129 (382)
T ss_pred HHHHHHHh-------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHH
Confidence 99988886 356778999999999999888888888899988776 78889
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGV 241 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~ 241 (547)
+++..+..+|..++|.+++++.+..+||+.|++.++..++..+..
T Consensus 130 ~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 130 AGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 998888999999999999999998999999998776555544433
No 44
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.88 E-value=7.8e-20 Score=191.09 Aligned_cols=158 Identities=12% Similarity=0.121 Sum_probs=137.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
.|.++.+++..++..+....+.+.+|.|.. ++|.|..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 467888999999988888888888888886 5899999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.+.++.+ ++...++++|++.|++.+...+...+.+.+..++++ |++.
T Consensus 83 ~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~ 131 (381)
T PRK03633 83 AGCAGLGLM-------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRL 131 (381)
T ss_pred HHHHHHHHh-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHH
Confidence 888888776 346678889999999999888887777788888766 8999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVG 226 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~ 226 (547)
+++++...++|..+||.+++++.+...+...
T Consensus 132 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 162 (381)
T PRK03633 132 LAAYMMVYYLGTVLGQLLVSKVSTELMSVLP 162 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence 9999999999999999999998776434333
No 45
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.88 E-value=7.9e-20 Score=191.94 Aligned_cols=164 Identities=20% Similarity=0.170 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|+++.+.+..++..+........++.. .+++|.++.+.+++.+.+.+...+..+++|+++||+ ||||+++++.++..+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence 456677777777777665555555544 578999999999999999999999999999999997 999999999999988
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+.+++....+ .++.|+++|++.++..|...+++.|.+|+++ |+++.
T Consensus 81 ~~~~~~~~~~----------------------------~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~ 126 (393)
T PRK11195 81 GCLLMLFGIH----------------------------PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKAN 126 (393)
T ss_pred HHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence 8877766422 2677899999999999999999999999887 99999
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG 237 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~ 237 (547)
++.....++|..+||.++|++.+. .|+..+.+.+...+++
T Consensus 127 ~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 127 GWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 4776666655443333
No 46
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.87 E-value=2.3e-20 Score=200.80 Aligned_cols=154 Identities=17% Similarity=0.050 Sum_probs=122.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccc
Q 008953 69 HFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAK 148 (547)
Q Consensus 69 g~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (547)
+.+..+.+++.+.+.++..++.++.|+++||+ ||||+++++.+++.++.++++++..+-.- ....+
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~-------------~~~~~ 116 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTS-------------IGPDN 116 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccc-------------ccccc
Confidence 88899999999999999999999999999997 99999999999988888777763210000 00011
Q ss_pred cchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhh--------cc
Q 008953 149 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------TH 220 (547)
Q Consensus 149 ~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~ 220 (547)
.+....++++|+++|++.|+..+...++++|.+|+++ |++++++......+|..+++.+++.+. +.
T Consensus 117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 190 (479)
T PRK10077 117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT 190 (479)
T ss_pred hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence 2335668899999999999999999999999999888 999999999989999999887765543 45
Q ss_pred cchhhHHHHHHHHHHHHHHHHH
Q 008953 221 SGMDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 221 ~g~~~~f~~~~~~~~~~l~~~~ 242 (547)
.|||+.|++.++..++.++..+
T Consensus 191 ~gWr~~f~~~~~~~~~~~~~~~ 212 (479)
T PRK10077 191 DGWRYMFASEAIPALLFLMLLY 212 (479)
T ss_pred CChHHHHHHHHHHHHHHHHHHH
Confidence 6899999987666655544333
No 47
>PRK03699 putative transporter; Provisional
Probab=99.87 E-value=2.7e-19 Score=187.90 Aligned_cols=173 Identities=9% Similarity=0.043 Sum_probs=140.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
++|..+...+..++.....+.....+|. +.+++|+|..+.+++.+.+.++..++.+++|+++||+ ||||++..+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~ 82 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALM 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 3466666666666666665555455554 5678999999999999999999999999999999997 9999999999988
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++.+++.++ ++...+++.|++.|++.+...+...+.+.|.+|+++ |++
T Consensus 83 ~i~~~l~~~~-------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~ 131 (394)
T PRK03699 83 ILAVAGLMFS-------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGS 131 (394)
T ss_pred HHHHHHHHHc-------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHH
Confidence 8888888875 345678889999999999888888899999998876 888
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhh-cccchhhHHHHHHHHHHHHHHH
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQ-THSGMDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~-~~~g~~~~f~~~~~~~~~~l~~ 240 (547)
..+..+...++|+.++|.+.+++. +..|||+.|.+.++..++.++.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 888888888889999999988775 4578999998866655444433
No 48
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.87 E-value=1.2e-19 Score=194.14 Aligned_cols=151 Identities=13% Similarity=0.064 Sum_probs=121.2
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953 58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM 137 (547)
Q Consensus 58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 137 (547)
....+|+.++ |+++.+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.++++++..
T Consensus 49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~----------- 115 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW----------- 115 (452)
T ss_pred HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc-----------
Confidence 3445677777 99999999999999999999999999999997 9999999999988888887776521
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHH-HHHHHHHH
Q 008953 138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGEL-VALTVLVW 216 (547)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-~~~~i~~~ 216 (547)
...+...+++.|++.|++.+...+...+.+.|++|+++ |++++++++.+.++|.. .+|.++..
T Consensus 116 ----------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~ 179 (452)
T PRK11273 116 ----------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLG 179 (452)
T ss_pred ----------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 01245667888999999999888888888899999887 89999999898898864 45655434
Q ss_pred hhcccchhhHHHHHHHHHHHH
Q 008953 217 VQTHSGMDVGFGVSAAAMALG 237 (547)
Q Consensus 217 l~~~~g~~~~f~~~~~~~~~~ 237 (547)
+....+||+.|++.++..++.
T Consensus 180 ~~~~~gw~~~f~i~~~~~~~~ 200 (452)
T PRK11273 180 MAWFNDWHAALYMPAFAAILV 200 (452)
T ss_pred HHHhccHHHHHHHHHHHHHHH
Confidence 434458999999876655443
No 49
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.87 E-value=2e-19 Score=188.71 Aligned_cols=171 Identities=14% Similarity=0.072 Sum_probs=141.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
.+|..+.+..+.++..+......+.+|. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.+..
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 4577777777777777776655555554 4577999999999999999999999999999999997 9999999999988
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++.+++..+ .+...+++.|++.|++.+...+....+..|.+++++ +++
T Consensus 84 ~~~~~~~~~~-------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~ 132 (394)
T PRK11652 84 ILGTLVALFA-------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRH 132 (394)
T ss_pred HHHHHHHHHH-------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHH
Confidence 8888887775 345668889999999988777777778888888766 788
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGL 238 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l 238 (547)
..++...+..++..++|.+++++.+..|||+.|++.++..++..
T Consensus 133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~ 176 (394)
T PRK11652 133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT 176 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 88888888899999999999999988899999998765544433
No 50
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.87 E-value=6e-19 Score=185.79 Aligned_cols=169 Identities=14% Similarity=0.044 Sum_probs=138.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953 34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 113 (547)
..||++....+..++.....+....++++++ +++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 4468888888888888888887888888888 56999999999999999999999999999999997 999999999988
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
..++.+++..... . ..+...+++.|++.|+|.+...+...+.+.+.+|+++ |+
T Consensus 88 ~~~~~~~~~~~~~-~--------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g 140 (402)
T TIGR00897 88 WCVGHAAFIVFGL-G--------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LS 140 (402)
T ss_pred HHHHHHHHHHHhc-c--------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HH
Confidence 8887665532110 0 0245567788999999888777777778889888877 99
Q ss_pred cchhhhhhHHhHhH-HHHHHHHHHhhcccchhhHHHHHH
Q 008953 194 SYFNAAYFAFSTGE-LVALTVLVWVQTHSGMDVGFGVSA 231 (547)
Q Consensus 194 ~~~~~~~~~~~ig~-~~~~~i~~~l~~~~g~~~~f~~~~ 231 (547)
+++++++.+.++|. .++|.+++++.+..||+..++...
T Consensus 141 ~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~ 179 (402)
T TIGR00897 141 SAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSAL 179 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 99999999999996 689999999988889766655443
No 51
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.87 E-value=5.9e-19 Score=184.57 Aligned_cols=346 Identities=10% Similarity=-0.034 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH-HHHHH
Q 008953 40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV-ELSGF 118 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~-~~i~~ 118 (547)
+.+.+..++...++....+++|.|+. ++|++..+.+++.+.+.+...++.++.|.++||+ ||++........ ..+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence 44555566666666667788889985 5899999999999999999999999999999997 985433221111 11111
Q ss_pred H-HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953 119 I-LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197 (547)
Q Consensus 119 ~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 197 (547)
+ ++..+ ++.+.+++.|++++.+.+...|...++..+. +++ |++.++
T Consensus 85 ~~~~~~~-------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g 131 (382)
T TIGR00902 85 AAFSAGA-------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYG 131 (382)
T ss_pred HHHHHhh-------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCcc
Confidence 1 22222 3466788889989888888888877776542 233 788899
Q ss_pred hhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCC
Q 008953 198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICP 277 (547)
Q Consensus 198 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (547)
......++|.+++|.+++++.+++|||..|++......+.++.+ ..+++. ++++++..+
T Consensus 132 ~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~----------------- 190 (382)
T TIGR00902 132 KVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIGF-LIKPTI---PPKDAIPED----------------- 190 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HcCCCC---CCCcccccc-----------------
Confidence 99999999999999999999999999999887654433222222 221110 111000000
Q ss_pred CCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 008953 278 SNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILA 357 (547)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (547)
+ ..+..... +..++++.+...+..++........+.
T Consensus 191 -------------~--------~~~~~~~~-----------------------~~l~~~~~~~~l~~~~l~~~~~~~~~~ 226 (382)
T TIGR00902 191 -------------E--------SQGDSAFI-----------------------ALLKNPMNLRFLAAVCLIQGAHAAYYG 226 (382)
T ss_pred -------------c--------cccchhHH-----------------------HHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 011122211212212222222222222
Q ss_pred hhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHH
Q 008953 358 QLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMI 436 (547)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~ 436 (547)
..+. +. + + . |... ..+.......+..++..++.+++ .+| +++++.+.+|.++.++..+
T Consensus 227 ~~~~-~l-~-----~-~--g~s~~~~g~l~~~~~~~~i~~~~~~~~l----~~r-------~g~~~~l~~~~~~~~~~~~ 285 (382)
T TIGR00902 227 FSAI-YW-Q-----A-A--GISASATGLLWGIGVLAEIIIFAFSNKL----FQN-------CSARDLLLISAIACVGRWA 285 (382)
T ss_pred HHHH-HH-H-----H-C--CCCHhHHHHHHHHHHHHHHHHHHHhHHH----Hhh-------CCHHHHHHHHHHHHHHHHH
Confidence 2221 11 1 1 1 1111 11222222333333333333322 333 3566778899999999988
Q ss_pred HHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008953 437 SAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY-CSYSFGFYLSSLLVS 515 (547)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~-~~~~~G~~lg~~i~~ 515 (547)
.++..+ +.+.+++..+++++.+++..+....++.+. |++.|++++++++ ...++|..+++.+.|
T Consensus 286 ~~~~~~--------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G 350 (382)
T TIGR00902 286 IIGAIE--------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAG 350 (382)
T ss_pred HHHhHh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877652 566677778999999999999999999988 9999999999987 467899999999999
Q ss_pred HHHHhh
Q 008953 516 FVNKVT 521 (547)
Q Consensus 516 ~l~~~~ 521 (547)
++.+..
T Consensus 351 ~l~~~~ 356 (382)
T TIGR00902 351 FIYPTL 356 (382)
T ss_pred HHHHhc
Confidence 998853
No 52
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.87 E-value=6.8e-20 Score=196.13 Aligned_cols=354 Identities=12% Similarity=0.025 Sum_probs=211.1
Q ss_pred HHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 008953 61 ITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTD 140 (547)
Q Consensus 61 ~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 140 (547)
.+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.++++++.
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------- 105 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS--------------- 105 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh---------------
Confidence 3445678999999999999999999999999999999996 999999999988888888887763
Q ss_pred CCcccccccchhHHHH-HHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhc
Q 008953 141 SENCEEAKGFKASIFF-LALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT 219 (547)
Q Consensus 141 ~~~~~~~~~~~~~~~~-~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~ 219 (547)
+...++ ..|++.|++.+...+...+++.+.++ ++ |+++.++.+.+.++|..++|.+++++.+
T Consensus 106 ----------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~ 168 (455)
T TIGR00892 106 ----------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFE 168 (455)
T ss_pred ----------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 233344 45688899988765666677788885 45 8999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccc
Q 008953 220 HSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVF 299 (547)
Q Consensus 220 ~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (547)
.+|||++|++.++..+++++..++.++....++....+ + . ....+. .. .++ .
T Consensus 169 ~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~-----------~---~~~~~~----~~-~~~------~- 220 (455)
T TIGR00892 169 SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSK--S-----------K---EGLPPD----GS-TKK------L- 220 (455)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHhCCCCccccccccc--c-----------c---ccCCCC----Cc-ccc------c-
Confidence 99999999998776665554444433221110000000 0 0 000000 00 000 0
Q ss_pred cccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcce
Q 008953 300 LTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFH 379 (547)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (547)
......+ +..++. ..+..++++........++....++......+.+... . ++.
T Consensus 221 --~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-------~---g~s 274 (455)
T TIGR00892 221 --SKKSTAE------------KINRFL--DFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-------K---GVD 274 (455)
T ss_pred --cccchhh------------hhhhhc--chHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-------c---CCC
Confidence 0000000 000000 0001111111111111111222222222222221111 0 111
Q ss_pred e-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccch
Q 008953 380 V-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSI 458 (547)
Q Consensus 380 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (547)
. ..+.+..+..++.++..|+..++.+ |...++ .....+..+.++.+++.++.... .+.
T Consensus 275 ~~~~g~~~~~~~~~~~~~~~~~g~l~d----~~~~~~---~~~~~~~~~~~~~~l~~ll~~~~--------------~~~ 333 (455)
T TIGR00892 275 EYEAAFLLSIIGFVDIFARPSCGLIAG----LKWIRP---HVQYLFSFALLFNGLTHLLCALA--------------GDY 333 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccCH---HHHHHHHHHHHHHHHHHHHHHHh--------------chH
Confidence 1 1122333334444555555554433 211110 11122333444444444443332 245
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008953 459 FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTS 522 (547)
Q Consensus 459 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~~ 522 (547)
+.++...++.|++.+...+...+.+.+.+|++.+++..|+++....+|+.+|+.+.+.+.+..+
T Consensus 334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g 397 (455)
T TIGR00892 334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK 397 (455)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence 5666677888999999999999999999999999999999999999999999999998877543
No 53
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.87 E-value=5.5e-20 Score=199.34 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=134.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-----cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINE-----MHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF 110 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~ 110 (547)
++.+..+.+..+...+....+....+. +.++ .+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++
T Consensus 15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~ 92 (502)
T TIGR00887 15 FRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGME 92 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHH
Confidence 344444555555555544444443443 3332 245566778999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953 111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK 190 (547)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (547)
.++..++.++++++.+. ....+...++++|++.|++.|+..+..++++.|.+|+++
T Consensus 93 ~~~~~v~~~~~~~~~~~-------------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~----- 148 (502)
T TIGR00887 93 LIIMIIATVASGLSPGS-------------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW----- 148 (502)
T ss_pred HHHHHHHHHHHHHccCc-------------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh-----
Confidence 99999988888775320 000125679999999999999999999999999999988
Q ss_pred ccccchhhhhhHHhHhHHHHHHHHHHhhc-----------------------ccchhhHHHHHHHHHHHHHHHHHH
Q 008953 191 KLSSYFNAAYFAFSTGELVALTVLVWVQT-----------------------HSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~-----------------------~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
|+++.++.+....+|..+++.+..++.. ..+||+.|.+.++..++.++..+.
T Consensus 149 -Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~ 223 (502)
T TIGR00887 149 -RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT 223 (502)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998888765431 237999998776665555444433
No 54
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.87 E-value=7.1e-20 Score=196.56 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=127.4
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccc
Q 008953 67 EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEE 146 (547)
Q Consensus 67 ~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (547)
+++++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++..+..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6889999999999999999999999999999997 9999999999888888777655422
Q ss_pred cccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhccc-chhh
Q 008953 147 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-GMDV 225 (547)
Q Consensus 147 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~-g~~~ 225 (547)
.....+++.|+++|++.+...+....++.|.+|+++ |++++++.+.+.++|..++|.+++++.+.. |||+
T Consensus 129 ---~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~ 199 (465)
T TIGR00894 129 ---GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPM 199 (465)
T ss_pred ---cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCe
Confidence 234568889999999999999999999999999888 999999999999999999999999999884 9999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008953 226 GFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 226 ~f~~~~~~~~~~l~~~~~ 243 (547)
.|++.++..++..+.++.
T Consensus 200 ~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 200 IFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred ehhhhhHHHHHHHHHHHH
Confidence 999877765554444433
No 55
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.86 E-value=6.9e-19 Score=184.76 Aligned_cols=174 Identities=13% Similarity=0.073 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhhhhHHhhcccchHHHHH-HHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIG-TVFLLALLGGYLSDSFLGSFWTML-IFGFVE 114 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~ 114 (547)
...+...+..++..+....+.+.++.|+.+++|.+..+.+++.+...+ +..++++++|+ +||+ ||||.++ .+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~ 92 (393)
T PRK15011 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLG 92 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHH
Confidence 445667777888888888888999999999999999999999776655 55566666666 9997 9998754 444555
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc--
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL-- 192 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r-- 192 (547)
.++..+.+++. +...+++.+.+.+...+...|...++..|..++++ |
T Consensus 93 ~~~~~~~~~~~-------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 141 (393)
T PRK15011 93 VLACTLFAWNR-------------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REA 141 (393)
T ss_pred HHHHHHHHHhh-------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chH
Confidence 56666655542 34444444444433334556666777777655443 3
Q ss_pred ccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 193 SSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+...++.+.+.++|.+++|.+++++.++.|||..|++.++..++..+..+.
T Consensus 142 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 142 VMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 233467778889999999999999999899999999877655555444433
No 56
>PRK11043 putative transporter; Provisional
Probab=99.86 E-value=5.4e-19 Score=185.91 Aligned_cols=147 Identities=18% Similarity=0.139 Sum_probs=125.7
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCc
Q 008953 64 VINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSEN 143 (547)
Q Consensus 64 l~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (547)
+.+++|.++.+.+++.+.+.++..++.+++|+++||+ |||+.+..+.++..++.+++..+
T Consensus 32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------------------- 91 (401)
T PRK11043 32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV------------------- 91 (401)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 6678999999999999999999999999999999997 99999999988888888887775
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccch
Q 008953 144 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGM 223 (547)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~ 223 (547)
++...+++.|++.|++.+...+...+++.|.+|+++ +.+.++......++|..++|.+++++.++.||
T Consensus 92 ------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~ 159 (401)
T PRK11043 92 ------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGW 159 (401)
T ss_pred ------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 345668889999999888777777788899999776 67778888888889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 008953 224 DVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 224 ~~~f~~~~~~~~~~l~~~~ 242 (547)
++.|++.++..++..+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 160 QAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999887666555544443
No 57
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.86 E-value=4.9e-19 Score=190.58 Aligned_cols=174 Identities=11% Similarity=0.056 Sum_probs=129.9
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
+|.+.......++.....+...+. .+++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~ 112 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPL-LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 344444444444555555554443 3466788999999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.++++++. +...+++.|++.|++.+... ....++.|.+|+++ |+++
T Consensus 113 ~~~~~~~~~~-------------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a 160 (476)
T PLN00028 113 PAVFCMSLVS-------------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTA 160 (476)
T ss_pred HHHHHHHHhc-------------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHH
Confidence 8888877763 35567788999999887654 34567889999887 8999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhh----c-----ccchhhHHHHHHHHHHHHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQ----T-----HSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~----~-----~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+++.+...++|..+++.+.+.+. + ..|||+.|++.++..++..+..+.
T Consensus 161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99988777788877776665442 1 258999999877665554444333
No 58
>PRK15075 citrate-proton symporter; Provisional
Probab=99.86 E-value=1.3e-18 Score=185.24 Aligned_cols=171 Identities=13% Similarity=0.039 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHH-HHHHHH-----HHHHHHhhhhHHhhcccchHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANI-VTNFIG-----TVFLLALLGGYLSDSFLGSFWTMLIF 110 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i-~~~~~~-----~~~~~~~~~G~laDr~~Gr~~~~~~~ 110 (547)
+....+.+..+++.+... ......+.+.++++.++.+.+.. .+.... ...++.++.|+++||+ ||||.++.+
T Consensus 15 ~~~~~~~~~~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~ 92 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFF-LFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVT 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHH
Confidence 334444444444444444 44566667888899888775433 332222 2236788999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953 111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK 190 (547)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (547)
.++..++.++++++.+...+ .......++++|+++|++.+...+...++++|.+|+++
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~-----------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~----- 150 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATI-----------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR----- 150 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHH-----------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc-----
Confidence 99999999999886431110 00011246889999999999999988999999999988
Q ss_pred ccccchhhhhhHHhHhHHHHHHHHHHhh--------cccchhhHHHHHHH
Q 008953 191 KLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMDVGFGVSAA 232 (547)
Q Consensus 191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~~g~~~~f~~~~~ 232 (547)
|++..++.....++|..+++.+++.+. +..|||++|++.+.
T Consensus 151 -rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 151 -KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 999999988888888888887776652 46799999987543
No 59
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.86 E-value=1.9e-19 Score=194.58 Aligned_cols=167 Identities=16% Similarity=0.102 Sum_probs=141.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953 34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 113 (547)
.+++.+..+.+..++..+....+ ....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 44565666666666666655544 4455567788999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
..++.+++.++ .+...+++.|++.|++.++..+...+++.|.+|+++ |+
T Consensus 95 ~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~ 143 (496)
T PRK03893 95 FSVGTLACGFA-------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RN 143 (496)
T ss_pred HHHHHHHHHHH-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HH
Confidence 88888888876 346678889999999999999999999999999877 88
Q ss_pred cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHH
Q 008953 194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAA 233 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~ 233 (547)
+.+++.+...++|..++|.+.+++.++.+||+.|++.++.
T Consensus 144 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 144 KASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875443
No 60
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.85 E-value=1.3e-18 Score=183.86 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=128.3
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCc
Q 008953 64 VINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSEN 143 (547)
Q Consensus 64 l~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (547)
+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||++++.+.++..++.+++..+
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a------------------- 101 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT------------------- 101 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-------------------
Confidence 5678999999999999999999999999999999997 99999999999999998888876
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccch
Q 008953 144 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGM 223 (547)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~ 223 (547)
.+...++++|+++|++.+...+...+.+.|.+|+++ |.+.++++....++|..++|.+++++.++.||
T Consensus 102 ------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw 169 (413)
T PRK15403 102 ------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHW 169 (413)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 346678999999999988766666778889999877 78889999999999999999999999988899
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 008953 224 DVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 224 ~~~f~~~~~~~~~~l~~~~ 242 (547)
|+.|++.++..+++++..+
T Consensus 170 ~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 170 KVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999987776666554433
No 61
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.85 E-value=5.5e-19 Score=187.14 Aligned_cols=367 Identities=10% Similarity=-0.001 Sum_probs=211.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.+|.+....++..++.+...++++.|+++++|+++.+.+++.+.+.++..+++++.|+++||+ ||||+++++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 5677777788888888888899999999999999999999999999999999999999999997 999999887665554
Q ss_pred HHHHHHH-hhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 117 GFILLSV-QAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 117 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
+...... ... +. ... ....+..+.++..+...+...+.+.+..++. .++ ++..
T Consensus 89 ~~~~~~~~~~~-~~--------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~g~~ 142 (420)
T PRK09528 89 LFGPFFIYVFA-PL--------------------LQY-NILLGAIVGGIYLGFGFLAGAGAIEAYIERV-SRR---SGFE 142 (420)
T ss_pred HHHHHHHHHHH-HH--------------------HHH-HHHHHHHHHHHHhhhhhccchhhhhhHHHHH-Hhh---cccc
Confidence 4332211 100 00 000 0111122222222322222222333332211 111 5667
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI 275 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (547)
++..+...++|.+++|.+++++.+ .+|++.|++.++..+++++..+..+++.++++...++
T Consensus 143 ~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 203 (420)
T PRK09528 143 YGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA------------------ 203 (420)
T ss_pred chhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc------------------
Confidence 888888889999999999999876 4899999887766655555544433221111000000
Q ss_pred CCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHH-HHHHH
Q 008953 276 CPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACT-IIFNT 354 (547)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 354 (547)
+.. +.+.....+... ..+++ .++......+.. ..+..
T Consensus 204 -~~~--------------------~~~~~~~~~~~~--------------------~l~~~-~~~~l~l~~~~~~~~~~~ 241 (420)
T PRK09528 204 -LGA--------------------NASAVSLKDALA--------------------LLKLP-KFWFLVLYVIGVACFYDV 241 (420)
T ss_pred -hhc--------------------ccccccHHHHHH--------------------HccCC-CeEeehHHHHHHHHHHHH
Confidence 000 000000000000 00000 111111111111 11222
Q ss_pred HHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008953 355 ILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS 434 (547)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~ 434 (547)
...+.+.+.... ..+.... ....+....+..+...+..++.+++. +|.++| +.+..+.++.+++
T Consensus 242 ~~~~~~~~~~~~--~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~----dr~g~~-------~~~~~~~~l~~~~ 305 (420)
T PRK09528 242 FDQQFPNFFASF--FATPEQG---TRVFGYLNSFQVFLEALIMFFAPFII----NRIGAK-------NALLLAGTIMAVR 305 (420)
T ss_pred HHHHHHHHHHHH--HhccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCcc-------hhhHHHHHHHHHH
Confidence 222233322211 0000100 00112233333344445555555544 454433 3466777777777
Q ss_pred HHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH-HHHHHHHHHHHHHHH
Q 008953 435 MISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM-TYCSYSFGFYLSSLL 513 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~~~~~~G~~lg~~i 513 (547)
.+..++. .+.++++...++.+++.+...+....++.+..|++.+++..++ +++...+|+.+++.+
T Consensus 306 ~~l~~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~ 371 (420)
T PRK09528 306 IIGSGFA--------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL 371 (420)
T ss_pred HHHHHhc--------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH
Confidence 7766654 2456666777888888888888888899999999999988765 678889999999999
Q ss_pred HHHHHHhh
Q 008953 514 VSFVNKVT 521 (547)
Q Consensus 514 ~~~l~~~~ 521 (547)
.+++.+..
T Consensus 372 ~G~l~~~~ 379 (420)
T PRK09528 372 AGNLYDSI 379 (420)
T ss_pred HHHHHHhh
Confidence 99988753
No 62
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.85 E-value=2.9e-19 Score=185.04 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|+++..++..+......+...+++|.++++++|+++.+.+++.+.+.++..++.+++|+++||+ |||+.+.++.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i 79 (366)
T TIGR00886 1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAI 79 (366)
T ss_pred CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 3456677777777777787778888789999999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+.+++.++. .+...+++.|+++|++.+.. +...+++.|.+|+++ |++..
T Consensus 80 ~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~ 128 (366)
T TIGR00886 80 PCLWAGLAV------------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTAL 128 (366)
T ss_pred HHHHHHHHh------------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHH
Confidence 988888763 04667888999999986654 556788999999887 88999
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhc----------ccchhhHHHH
Q 008953 197 NAAYFAFSTGELVALTVLVWVQT----------HSGMDVGFGV 229 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~----------~~g~~~~f~~ 229 (547)
++.....++|..+++.+++.+.. +.+||+.|++
T Consensus 129 ~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 129 GLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 99887788888888877766654 3479999843
No 63
>PRK10133 L-fucose transporter; Provisional
Probab=99.84 E-value=2.5e-18 Score=183.06 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=123.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
+...++.+.++.+...+........+| .+++++|.++.+.++..+.+.++..++.++.|+++||+ ||||++.++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 345566666666666666655555555 45889999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++.+++..... .+++..++++|+++|+|.+...+...+++.|..|+++ |..
T Consensus 102 ~~~~~l~~~~~~----------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~ 153 (438)
T PRK10133 102 ALGAALFWPAAE----------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF 153 (438)
T ss_pred HHHHHHHHHHHh----------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHH
Confidence 999887642210 0456778999999999999999999999988765554 445
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhh
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQ 218 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~ 218 (547)
.++..+....+|..++|.+++.+.
T Consensus 154 ~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 154 RLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888899999998877543
No 64
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.84 E-value=8.8e-19 Score=186.99 Aligned_cols=144 Identities=23% Similarity=0.289 Sum_probs=122.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccc
Q 008953 71 SLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGF 150 (547)
Q Consensus 71 ~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (547)
+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++....+ ..
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 125 (481)
T TIGR00879 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF----------------------AL 125 (481)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc----------------------cc
Confidence 389999999999999999999999999997 9999999999999998888866432 12
Q ss_pred hhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH---HHhhcccchhhHH
Q 008953 151 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL---VWVQTHSGMDVGF 227 (547)
Q Consensus 151 ~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~---~~l~~~~g~~~~f 227 (547)
+...+++.|++.|+|.+...+...++++|.+|+++ |++++++++...++|..+++.++ +.+.+..+||+.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 34568899999999999999999999999999888 99999999999999999999998 6766778999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008953 228 GVSAAAMALGLFGVVS 243 (547)
Q Consensus 228 ~~~~~~~~~~l~~~~~ 243 (547)
++.++..++.++..++
T Consensus 200 ~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 200 GLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9866555554444433
No 65
>TIGR00898 2A0119 cation transport protein.
Probab=99.84 E-value=5.3e-19 Score=191.70 Aligned_cols=147 Identities=16% Similarity=0.131 Sum_probs=126.4
Q ss_pred HHhhhhcCCC---hhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 008953 62 TYVINEMHFS---LSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMV 138 (547)
Q Consensus 62 ~yl~~~lg~~---~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 138 (547)
+-+.++++++ ..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.++++++
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~-------------- 177 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS-------------- 177 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc--------------
Confidence 3466789998 89999999999999999999999999996 99999999999999888888876
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhh
Q 008953 139 TDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ 218 (547)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~ 218 (547)
.++..+++.|++.|++.+...+...+++.|.+|+++ |+...++......+|.+++|.++..+.
T Consensus 178 -----------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (505)
T TIGR00898 178 -----------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIP 240 (505)
T ss_pred -----------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356778999999999999999999999999999888 888888888888999999998876654
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHH
Q 008953 219 THSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 219 ~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+ ||+.|++.++..++..+..+.
T Consensus 241 ~---wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 241 D---WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHh
Confidence 3 999999877666655554443
No 66
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.84 E-value=1.7e-18 Score=181.94 Aligned_cols=368 Identities=8% Similarity=-0.005 Sum_probs=217.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.+|.+....++.........++++.|+++++|.++.+.+++.+.+.+...++.++.|+++||+ ||||.++.+.+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 5678888888888888888899999999999999999999999999999999999999999997 999999887666554
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+..........+. ........+++.+++.+++.+...+....+..|..+ + ++..+
T Consensus 81 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~ 135 (396)
T TIGR00882 81 LFAPFFIYVFGPL-----------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEY 135 (396)
T ss_pred HHHHHHHHHhhhH-----------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccccc
Confidence 4332221100000 000112334556777888888777777666655322 1 33456
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccC
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQIC 276 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (547)
+......++|.+++|.+++.+.+ .+|+..|++.+...++..+..+...++. ++++...+ + .+
T Consensus 136 g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----------~-~~- 197 (396)
T TIGR00882 136 GKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVAN-----------A-LG- 197 (396)
T ss_pred chhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhhc-----------c-cc-
Confidence 77778889999999999998865 5999999987666555544443322211 11000000 0 00
Q ss_pred CCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008953 277 PSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTIL 356 (547)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (547)
.++ + ..+ ..+.. +..++++.+...+..+.....+....
T Consensus 198 ~~~-----------~--------~~~---~~~~~--------------------~~l~~~~~~~~~l~~~~~~~~~~~~~ 235 (396)
T TIGR00882 198 ANA-----------S--------AFS---LKLAL--------------------ELFRQRKFWMFVLYVVGVACVYDVFD 235 (396)
T ss_pred ccc-----------C--------CCC---HHHHH--------------------HHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 000 0 000 00000 00111111111111111111111221
Q ss_pred hhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHH
Q 008953 357 AQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSM 435 (547)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~ 435 (547)
.+.+.+... ..... +.+. ..+.......+...+......++ .+|.++| +.+.++.++.+++.
T Consensus 236 ~~~~~y~~~---~~~~~---~~~~~~~g~~~~~~~i~~~~~~~~~g~l----~~r~g~~-------~~l~~~~~l~~l~~ 298 (396)
T TIGR00882 236 QQFANFFTS---FFATP---QQGTRVFGYVTTMGELLNALIMFCAPLI----INRIGAK-------NALLIAGTIMSVRI 298 (396)
T ss_pred HHHHHHHHH---hcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccc-------hhHHHHHHHHHHHH
Confidence 222222211 11100 0000 01222222333333333333333 4454333 44677777777766
Q ss_pred HHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH-HHHHHHHHHHHHHHHH
Q 008953 436 ISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM-TYCSYSFGFYLSSLLV 514 (547)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~~~~~~G~~lg~~i~ 514 (547)
...... .+.+++.+..++.+++..........+..+..|++.+++..+. +++...+|+.+++.+.
T Consensus 299 ~~~~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~ 364 (396)
T TIGR00882 299 IGSSFA--------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLA 364 (396)
T ss_pred HHHHhc--------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhH
Confidence 655543 2556666777888888877777777788888899988887766 6788999999999999
Q ss_pred HHHHHhh
Q 008953 515 SFVNKVT 521 (547)
Q Consensus 515 ~~l~~~~ 521 (547)
+++.+..
T Consensus 365 G~l~~~~ 371 (396)
T TIGR00882 365 GNMYDSI 371 (396)
T ss_pred HHHHHhc
Confidence 9998853
No 67
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.84 E-value=2.2e-19 Score=181.03 Aligned_cols=179 Identities=14% Similarity=0.060 Sum_probs=155.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHH---HHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHH
Q 008953 33 HGGMKAAVFVLGLQAFEIMAIAAVGNN---LITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLI 109 (547)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~ 109 (547)
+.+.|--+.+++..++...++|.+.-. ..+++.++.++|.+|.+.+.+++.+.+.++-.+.|.++||. +.|+.+-+
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~ 99 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAF 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehH
Confidence 344455567777888888888877643 56788888999999999999999999999999999999997 99999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccc
Q 008953 110 FGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS 189 (547)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~ 189 (547)
++++..+..+++.++. +...+.+..++.|..+|.-.|.....++.++++++
T Consensus 100 gLilsai~nil~Gfs~-------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e---- 150 (448)
T COG2271 100 GLILSAIVNILFGFSP-------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE---- 150 (448)
T ss_pred HHHHHHHHHHHHhhhh-------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc----
Confidence 9999999999999974 46668888889999999999999999999999988
Q ss_pred cccccchhhhhhHHhHhHHHHHHHH--HHhhcccchhhHHHHHHHHHHHH-HHHHHH
Q 008953 190 KKLSSYFNAAYFAFSTGELVALTVL--VWVQTHSGMDVGFGVSAAAMALG-LFGVVS 243 (547)
Q Consensus 190 ~~r~~~~~~~~~~~~ig~~~~~~i~--~~l~~~~g~~~~f~~~~~~~~~~-l~~~~~ 243 (547)
||+..++.+.+.|+|+++.|.+. +++..+.+||..|++++++.++. ++.++.
T Consensus 151 --RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 151 --RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred --cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999988765554 444444
No 68
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.84 E-value=1.5e-20 Score=191.20 Aligned_cols=181 Identities=18% Similarity=0.100 Sum_probs=161.3
Q ss_pred CcCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953 31 NKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF 110 (547)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~ 110 (547)
..+..++.+.+++++...+++--|.+-. .-.-.++.+|.++++.|++...+.+...+.+|+.|+++||| .||+++.+|
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG 104 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVG 104 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeH
Confidence 4445567788889999999999998765 44456778999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953 111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK 190 (547)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (547)
..++.+..++++++ ..++++.++|.+.|+|.+...|..+++++|.||+++
T Consensus 105 ~~iW~~Av~~~~fs-------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~----- 154 (493)
T KOG1330|consen 105 IFIWTLAVFASGFS-------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK----- 154 (493)
T ss_pred HHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh-----
Confidence 99999999999998 457889999999999999999999999999999998
Q ss_pred ccccchhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHc
Q 008953 191 KLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVSG 244 (547)
Q Consensus 191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~~ 244 (547)
|++.++++|+++++|.++|.+.++.+..+.+ |||.|...+++.++..++.+..
T Consensus 155 -Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 155 -RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLF 208 (493)
T ss_pred -hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhh
Confidence 9999999999999999999999999998888 9999999887766655554443
No 69
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.83 E-value=2.2e-18 Score=178.27 Aligned_cols=329 Identities=14% Similarity=0.112 Sum_probs=205.7
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953 58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM 137 (547)
Q Consensus 58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 137 (547)
....+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ ||||++.++.+...++.+.+ .+
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~------------- 84 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA------------- 84 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-------------
Confidence 3344566778999999999999999999999999999999997 99999999988877776665 33
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHh
Q 008953 138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV 217 (547)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l 217 (547)
++...+++.|++.|++.+...+.....+.|.+| ++ |+++.++++...++|..+++.+++.+
T Consensus 85 ------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 85 ------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245567888999999999888777888888876 34 88899999999999999999998888
Q ss_pred hcccc--hhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCC
Q 008953 218 QTHSG--MDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDS 295 (547)
Q Consensus 218 ~~~~g--~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (547)
.++.+ ||+.|...++..++.++... ++.+++++++++ . .
T Consensus 146 ~~~~~~~w~~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------------~-~---------------- 186 (355)
T TIGR00896 146 AQHSGGHWQQALAWWALPALLALLAWI---PQVRRRVAANQT-------------------T-T---------------- 186 (355)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHh---hhhccccCCCCC-------------------C-C----------------
Confidence 77653 99888765544433322221 111111100000 0 0
Q ss_pred CccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCC
Q 008953 296 GSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLT 375 (547)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 375 (547)
...+++ ..++++.+...+...+....++....+.+.+.... ..+.
T Consensus 187 -------------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--g~~~--- 231 (355)
T TIGR00896 187 -------------------------RLTPVR-----IWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISH--GASA--- 231 (355)
T ss_pred -------------------------CCCCch-----hhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCH---
Confidence 000000 01111111111111122222233323333222111 1110
Q ss_pred CcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 008953 376 KNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKT 455 (547)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 455 (547)
...+.......+..++..++.+++. +|.++| ++.+.++..+.+++.+.......
T Consensus 232 ----~~~g~~~~~~~~~~i~~~~~~g~l~----dr~~~~------~~~~~~~~~~~~~~~~~~~~~~~------------ 285 (355)
T TIGR00896 232 ----ATAGSLLALMQLAQAASALLIPALA----RRVKDQ------RGIVAVLAVLQLVGLCGLLFAPM------------ 285 (355)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhHHHHH----hhhccc------hHHHHHHHHHHHHHHHHHHHhhh------------
Confidence 0112233334444555555555543 344222 23456676777777666655421
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008953 456 LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSS 523 (547)
Q Consensus 456 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~-p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~~~ 523 (547)
+..+ ...++.|++.+...|...+.+.+.. +++.++..+++.+....+|+.++|.+.+++.+.+++
T Consensus 286 -~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 286 -HGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred -hHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111 1346789999998888777766544 467789999999999999999999999999987654
No 70
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.83 E-value=1.4e-17 Score=174.25 Aligned_cols=337 Identities=9% Similarity=-0.013 Sum_probs=204.7
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchH----HHHHHHHHHHHHHHHHH
Q 008953 46 QAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSF----WTMLIFGFVELSGFILL 121 (547)
Q Consensus 46 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~----~~~~~~~~~~~i~~~l~ 121 (547)
.++...+.....+++|.|++ ++|.|..+.+++.+++.+...++.++.|.++||+ ||+ +.+.+...... ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~--~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA--VAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH--HHHH
Confidence 44444556667788899995 5899999999999999999999999999999997 984 33332222111 1111
Q ss_pred HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhh
Q 008953 122 SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF 201 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 201 (547)
..+ ++.+.+++.|++.+++.+...|...++..+. +++ |++.++..+.
T Consensus 89 ~~~-------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~ 135 (382)
T PRK11128 89 FGA-------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRL 135 (382)
T ss_pred Hhc-------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHH
Confidence 111 3466777889999999888888877776665 223 6777888888
Q ss_pred HHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcc
Q 008953 202 AFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQ 281 (547)
Q Consensus 202 ~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (547)
..++|.++||.+++++.+++|||..|++.++..++.++.... .++ +++++++.++ .
T Consensus 136 ~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~----------------~---- 191 (382)
T PRK11128 136 WGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLL-RPT---IMPQGESRQQ----------------E---- 191 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHc-cCC---CCCccccccc----------------c----
Confidence 889999999999999999999999998766544443333222 111 1111100000 0
Q ss_pred cccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhH-HHHHHHHHHHHHHHhhhh
Q 008953 282 MLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISV-VPIFACTIIFNTILAQLQ 360 (547)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 360 (547)
+.....+. +..+++ .++.. +..++........+...+
T Consensus 192 ------------------~~~~~~~~-----------------------~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 229 (382)
T PRK11128 192 ------------------SAGWPAWK-----------------------ALLKEP-TVWRFLLCVSLLQGSHAAYYGFSA 229 (382)
T ss_pred ------------------ccccchHH-----------------------HHHcCh-hHHHHHHHHHHHHHHhHhHHHHHH
Confidence 00000000 001111 12211 111122222222222222
Q ss_pred hhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008953 361 TFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAA 439 (547)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~ 439 (547)
. +..+ . +... ..+.+..++.+..++...+.+++ .+|. +.++.+..+.++.+++++..+
T Consensus 230 ~-~~~~-------~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~l~~~~~~~~~~~~~~~ 288 (382)
T PRK11128 230 I-YWQA-------A--GYSASTIGYLWSLGVVAEVLIFAFSNRL----FRRW-------SARDLLLLSAICGVVRWGLMG 288 (382)
T ss_pred H-HHHH-------C--CCCHhHHHHHHHHHHHHHHHHHHHHHHH----HHHC-------CHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111 1 1111 11222233333333333333333 3342 445667778888888777665
Q ss_pred HHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 008953 440 LMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY-CSYSFGFYLSSLLVSFVN 518 (547)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~-~~~~~G~~lg~~i~~~l~ 518 (547)
.. .+.+.+++..++.|+++++..+....+..+. +++++++.+++++ ....+|..+|+.+.|.+.
T Consensus 289 ~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 289 ST--------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred hh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 2556667788899999999999999998887 5566789999887 567888899999999888
Q ss_pred Hhh
Q 008953 519 KVT 521 (547)
Q Consensus 519 ~~~ 521 (547)
+..
T Consensus 354 ~~~ 356 (382)
T PRK11128 354 QHL 356 (382)
T ss_pred Hhc
Confidence 753
No 71
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.83 E-value=1.1e-18 Score=185.83 Aligned_cols=153 Identities=12% Similarity=0.034 Sum_probs=124.3
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 008953 59 NLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMV 138 (547)
Q Consensus 59 ~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 138 (547)
...+++++ +|+++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.+++....+.
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~----------- 114 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA----------- 114 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc-----------
Confidence 34456665 599999999999999999999999999999997 99999999888888887776654210
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHh-
Q 008953 139 TDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV- 217 (547)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l- 217 (547)
..+...+++.|++.|++.+...+.....+.|.+|+++ |++++++++...++|..+++.+.+.+
T Consensus 115 ----------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~ 178 (438)
T TIGR00712 115 ----------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGM 178 (438)
T ss_pred ----------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 0234567788999999999888888889999999888 99999999999999999998877754
Q ss_pred hcccchhhHHHHHHHHHHHHHHH
Q 008953 218 QTHSGMDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 218 ~~~~g~~~~f~~~~~~~~~~l~~ 240 (547)
..+.+||+.|++.++..++..+.
T Consensus 179 ~~~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 179 AWFNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Confidence 44568999999877665554433
No 72
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.83 E-value=6.8e-18 Score=200.64 Aligned_cols=361 Identities=14% Similarity=0.068 Sum_probs=217.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChh--hHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLS--NSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~--~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 113 (547)
.+.++.+++..++.++........+..++...++.+.. ..+++.+++.++..++.+++|+++||+ |||++++++.++
T Consensus 8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~ 86 (1146)
T PRK08633 8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF 86 (1146)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence 35566666777777776666666666677666666544 368889999999999999999999997 999999988876
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
..++.+++.++.. ..++..+++.|++.|++.+...+...+++.|.+|+++ |+
T Consensus 87 ~~~~~~~~~~~~~----------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~ 138 (1146)
T PRK08633 87 EVGLTLLIVLAYY----------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LS 138 (1146)
T ss_pred HHHHHHHHHHHHH----------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------ch
Confidence 6665555444321 0346778999999999999999999999999999888 99
Q ss_pred cchhhhhhHHhHhHHHHHHHHHHhhcc--------c-chhhHHHHHHHH-HHHHHHHHHHcCceeeccCCCCCCchhHHH
Q 008953 194 SYFNAAYFAFSTGELVALTVLVWVQTH--------S-GMDVGFGVSAAA-MALGLFGVVSGTLYYRNKRPQGSIFTPIAQ 263 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~--------~-g~~~~f~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (547)
+++++...+.++|.++|+.+++++... + +|.+.+.+..+. .+++++..+.. ++.+...+.... ..
T Consensus 139 ~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~--- 213 (1146)
T PRK08633 139 RANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRL-PKVPAAAPEVFD-KK--- 213 (1146)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcC-cCCCCCCccccc-cc---
Confidence 999999999999999999999998765 2 233333332222 22222222221 111110000000 00
Q ss_pred HHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHH
Q 008953 264 VFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVV 343 (547)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (547)
. .......... ++ ...+++......+
T Consensus 214 ---------------------------~--------~~~~~~~~~~---------------~~----~l~~~~~~~~~~~ 239 (1146)
T PRK08633 214 ---------------------------K--------YLFPKLLWRN---------------LK----LLRSDRVLWLAII 239 (1146)
T ss_pred ---------------------------c--------cccHHHHHHH---------------HH----HHhcCcHHHHHHH
Confidence 0 0000000000 00 0000011111111
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCccee--CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChh
Q 008953 344 PIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV--PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPL 421 (547)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~ 421 (547)
...+.....+.....++.++.. .+ ++.. ..+.+.....++.+++..+.+++ .+|.. .+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~-------~~--g~s~~~~~g~~~~~~~ig~~~g~~~~g~l----~~r~~-------~~ 299 (1146)
T PRK08633 240 GLSYFWFISQLAQANFPAYAKE-------VL--GLDNTFQVQYLLAASAIGIGIGSLLAGRL----SGRHI-------EL 299 (1146)
T ss_pred HHHHHHHHHHHHHHhhHHHHHH-------Hh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH----hCCce-------Ec
Confidence 1111111111121222221111 11 1111 12223333334444444444443 33432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHH
Q 008953 422 QRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYC 501 (547)
Q Consensus 422 ~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~ 501 (547)
+.+.++.++++++.+++... .+.+.+++..++.|++.++..+...+++.+.+|++.||+++|+.++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~ 365 (1146)
T PRK08633 300 GLVPLGALGLALSLFLLPTA--------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNF 365 (1146)
T ss_pred cchhHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHH
Confidence 34666777777776666654 2556667778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008953 502 SYSFGFYLSSLLVSFVN 518 (547)
Q Consensus 502 ~~~~G~~lg~~i~~~l~ 518 (547)
.+.+|..+++.+.+.+.
T Consensus 366 ~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 366 LQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998877776665544
No 73
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.83 E-value=1.5e-17 Score=174.27 Aligned_cols=169 Identities=15% Similarity=0.074 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 118 (547)
+-+.....+....+.......+| .+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.++.+.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence 33444444455555554444454 45567999999999999999999999999999999997 99999999999988888
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA 198 (547)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 198 (547)
+++..+ ++...+++.|+++|++.+...+...+++.|.+|+++ |++..++
T Consensus 83 ~~~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~ 131 (392)
T PRK10473 83 LLCSLA-------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSL 131 (392)
T ss_pred HHHHHh-------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence 888775 335567888999999999888888999999999887 8999999
Q ss_pred hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008953 199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 199 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~ 240 (547)
.+...++|..++|.+++++.+..+|++.|++.++..++..+.
T Consensus 132 ~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 132 LNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888889999998876655554443
No 74
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.82 E-value=9.4e-18 Score=174.65 Aligned_cols=155 Identities=16% Similarity=0.103 Sum_probs=133.5
Q ss_pred HhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008953 54 AAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPP 133 (547)
Q Consensus 54 ~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 133 (547)
....+.+|.+. +++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.+++..+
T Consensus 8 ~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~--------- 76 (377)
T PRK11102 8 DMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA--------- 76 (377)
T ss_pred HHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH---------
Confidence 33446666666 46999999999999999999999999999999997 99999999999999988888876
Q ss_pred CCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHH
Q 008953 134 KCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTV 213 (547)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i 213 (547)
.+...+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+
T Consensus 77 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~ 134 (377)
T PRK11102 77 ----------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPII 134 (377)
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345668889999999999988889999999999887 8999999999999999999999
Q ss_pred HHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008953 214 LVWVQTHSGMDVGFGVSAAAMALGLFGV 241 (547)
Q Consensus 214 ~~~l~~~~g~~~~f~~~~~~~~~~l~~~ 241 (547)
++++.+..+|++.|++.++..++..+..
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 135 GGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 9999998899999988766655554443
No 75
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.82 E-value=7.2e-18 Score=179.16 Aligned_cols=356 Identities=13% Similarity=0.064 Sum_probs=215.8
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHH-HHHHHHHHHHHHHHHH
Q 008953 46 QAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFW-TMLIFGFVELSGFILL 121 (547)
Q Consensus 46 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~-~~~~~~~~~~i~~~l~ 121 (547)
.+..++....+..+++.|+++++|+++.+++++.++..+...+..|+.|+++||. +|||| .++++.....++.+++
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence 4455666777778899999999999999999999999999999999999999983 38755 5667777777777777
Q ss_pred HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC-CCcccccccccchhhhh
Q 008953 122 SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ-SNPKQSKKLSSYFNAAY 200 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~ 200 (547)
....+.+. ......+++.+++.+++.+.......++.+|..++ ++ |++..++..
T Consensus 88 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~ 142 (437)
T TIGR00792 88 FTTPDFSA-------------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRR 142 (437)
T ss_pred HhCCCCCc-------------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHH
Confidence 66422110 12244566667777888887777778888888753 44 788888887
Q ss_pred hHHhHhHHHHHHHHHHhh-------cccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhc
Q 008953 201 FAFSTGELVALTVLVWVQ-------THSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRK 273 (547)
Q Consensus 201 ~~~~ig~~~~~~i~~~l~-------~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (547)
...++|..+++.+.+.+. +..+|++.+.+.++..++..+..+...++.+.++++.++
T Consensus 143 ~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~---------------- 206 (437)
T TIGR00792 143 FGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE---------------- 206 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc----------------
Confidence 778888777766655443 245799988877666555544443332221110000000
Q ss_pred ccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHH
Q 008953 274 QICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFN 353 (547)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (547)
++.+..+..+ ...++++ ++..+ ...+..+
T Consensus 207 ----------------------------~~~~~~~~~~-------------------~l~~~~~-~~~~~---~~~~~~~ 235 (437)
T TIGR00792 207 ----------------------------KKLSLKQIFK-------------------ALFKNDQ-LLILC---LAYLFYN 235 (437)
T ss_pred ----------------------------cCCCHHHHHH-------------------HHhCCHH-HHHHH---HHHHHHH
Confidence 0000000000 0001111 11111 1111122
Q ss_pred HHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHH
Q 008953 354 TILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATF 433 (547)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i 433 (547)
..+......... ..+..+ +.....+.+..+..+..++..++..++. +|.+ +++.+.++.++.++
T Consensus 236 ~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~i~~ii~~~~~~~l~----~r~g-------~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 236 LAFNIKNGVQVY---YFTYVL--GDPELFSYMGSIAIVAGLIGVLLFPRLV----KKFG-------RKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHcchhhe---eEeeec--CChHHHHHHHHHHHHHHHHHHHHHHHHH----HHhC-------cHHHHHHHHHHHHH
Confidence 221111111110 001011 0000112222333455555556655543 3433 33557777777777
Q ss_pred HHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc-------hhhHHHHHHHHHHHHHHH
Q 008953 434 SMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSL-------KGMQAFLTAMTYCSYSFG 506 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~rg~~~g~~~~~~~~G 506 (547)
+++...... .+.+..++..++.+++.+...+..+++..|..| ++.+|.+.|++++...+|
T Consensus 300 ~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g 366 (437)
T TIGR00792 300 GYLIFFFAG-------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLG 366 (437)
T ss_pred HHHHHHHcc-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHH
Confidence 776655431 234455666778889999888888888888765 556899999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 008953 507 FYLSSLLVSFVNKVTS 522 (547)
Q Consensus 507 ~~lg~~i~~~l~~~~~ 522 (547)
..+++.+.+.+.+..+
T Consensus 367 ~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 367 QALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999988654
No 76
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.82 E-value=6.2e-18 Score=200.85 Aligned_cols=342 Identities=11% Similarity=0.076 Sum_probs=199.6
Q ss_pred hhhhcCCCh-hhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH--HHHHHHHHHHhhccCCCCCCCCCCCCC
Q 008953 64 VINEMHFSL-SNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV--ELSGFILLSVQAHLPQLKPPKCNMVTD 140 (547)
Q Consensus 64 l~~~lg~~~-~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~ 140 (547)
+++..+.+. ...+++.+++.+...++.+++|+++||+ |||+++...... ......+..+..
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~--------------- 105 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL--------------- 105 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 334444433 3467788889999999999999999997 999986442222 111111222211
Q ss_pred CCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc
Q 008953 141 SENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH 220 (547)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~ 220 (547)
.+++.++++|+++|++.++..|...+++.|.+|+++ |++++++..++.++|.++||.++|++...
T Consensus 106 ---------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~ 170 (1140)
T PRK06814 106 ---------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATIS 170 (1140)
T ss_pred ---------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346778999999999999999999999999999988 99999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCcccc
Q 008953 221 SGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFL 300 (547)
Q Consensus 221 ~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (547)
.+|++.|+..++..+++++..+...+. +..++..+......+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------------------------- 212 (1140)
T PRK06814 171 GNFVILVALLMGIAVLGWLASLFIPKT-GNAAPDLKIDRNIIR------------------------------------- 212 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCeeccchHH-------------------------------------
Confidence 999988855444444443333322211 110000000000000
Q ss_pred ccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCccee
Q 008953 301 TQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV 380 (547)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (547)
...+.. + ...+++..+...+..+++...+.....+++.+.... ...+ ..
T Consensus 213 ----~~~~~~---------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~g~~-------~~ 261 (1140)
T PRK06814 213 ----STITLL---------------K----YAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-LGGD-------EN 261 (1140)
T ss_pred ----HHHHHH---------------H----HHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-cCCc-------hH
Confidence 000000 0 000111111111222222222223323333222111 0000 01
Q ss_pred CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC--------
Q 008953 381 PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDS-------- 452 (547)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~-------- 452 (547)
..+.+.....++.+++..+..++. ++..++ +.+..+.++.++..+.+.+...+ .....
T Consensus 262 ~~g~~~~~~~~g~~ig~~~~g~l~----~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~ 327 (1140)
T PRK06814 262 VATLFLAVFSVGVAVGSFLASKLS----EGRITL-------LYVPIGALLMGLFGLDLAFASSS---VPAEPAQLKSILV 327 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----CCceee-------eeehHHHHHHHHHHHHHHhcccc---cccccccccchhh
Confidence 123333444455555555555442 222111 22344444444433333321000 00000
Q ss_pred -CCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 453 -GKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 519 (547)
Q Consensus 453 -~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~ 519 (547)
....+.+.+++..++.|++.++..++..+++.+.+|++.||+++|+.++.+.+|..+++.+.+.+..
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 328 FLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred hhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0013456667788889999999999999999999999999999999999999999999999888764
No 77
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.82 E-value=1.2e-17 Score=176.04 Aligned_cols=178 Identities=11% Similarity=0.011 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVIN-EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
|+++. ....+...+..+.+...+...+.+ ++|++..|.+++.+++.++..+++++.|++.||+ |.|+++.++.++..
T Consensus 34 r~l~~-s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWI-SVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 55544 455566666666666666666655 7999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
+.+++++++...+ .+++..+++.|++.|++ +...+.....+.++||+++ |+++
T Consensus 112 i~~~~~~~a~~~~--------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A 164 (462)
T PRK15034 112 IPCVWLGIAVQNP--------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSA 164 (462)
T ss_pred HHHHHHHHHHccc--------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHH
Confidence 9888888752100 13567799999999998 6677888899999999888 8999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhh-----c-------------ccchhhHHHHHHHHHHHHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQ-----T-------------HSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~-----~-------------~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
++++....|+|..+++.+.+.+. . ..+|+.++++..+..+++.+..++
T Consensus 165 ~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 165 LGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987666777766655554322 2 334776666655555555444444
No 78
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.82 E-value=1.9e-17 Score=178.48 Aligned_cols=358 Identities=13% Similarity=0.114 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 118 (547)
+..+.+.+++.+++.+.-..-++-++. ++.-|+...+++..+..+-..+..+++|.++||+ .|||+++.+-++..+..
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVA 89 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHH
Confidence 333444444444444444343444444 4567788899999999999999999999999997 99999999988777666
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA 198 (547)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 198 (547)
+.+++..... ..+.+.+++..++.|++.+...|...+++.|..|+++ ..++.++
T Consensus 90 ~~L~~l~~~~--------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al 143 (524)
T PF05977_consen 90 LLLAVLAFFG--------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANAL 143 (524)
T ss_pred HHHHHHHHhC--------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHH
Confidence 5555543222 2456778888889999999999999999999999988 8888999
Q ss_pred hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCC
Q 008953 199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPS 278 (547)
Q Consensus 199 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (547)
.....|+.-.+||.++|.+....|-.+.|.+.++..++.++.+...+++.+ ++..+.+...+.+...++.-
T Consensus 144 ~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G~ryv------ 214 (524)
T PF05977_consen 144 NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPRERFFSALREGLRYV------ 214 (524)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHHHHHHHH------
Confidence 999999999999999999998889888999887766665555444333211 11111011110000000000
Q ss_pred CcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 008953 279 NPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQ 358 (547)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (547)
..+ ...+.. .+..+++.+........
T Consensus 215 --------------------------------------------------~~~--~~l~~~--l~~~~~~~l~~~a~~aL 240 (524)
T PF05977_consen 215 --------------------------------------------------RSS--PPLRSV--LLRSFLFNLFASAVWAL 240 (524)
T ss_pred --------------------------------------------------hcc--hHHHHH--HHHHHHHHHhhhHHHHh
Confidence 000 001111 11111222222222222
Q ss_pred hhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008953 359 LQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISA 438 (547)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~ 438 (547)
++- +..+ .+... ...-+.+.....++.++++.+..++ .+| .+..+.+..+.++.+++++.+
T Consensus 241 lPl-~a~~--~l~~~-----a~~yGll~a~~gvGai~Gal~~~~l----~~~-------~~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 241 LPL-FARD--VLGGG-----ASGYGLLLAAFGVGAILGALLLPRL----RRR-------LSSRRLVLLASLLFALALLLL 301 (524)
T ss_pred hhH-HHHH--HhCCc-----HHHHHHHHHHHHHHHHHHHHHHHHh----hcc-------cCcchhhHHHHHHHHHHHHHH
Confidence 221 1111 11110 0111233334444445444443322 222 234455777888888877777
Q ss_pred HHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 439 ALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 518 (547)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~ 518 (547)
++. .+.+..++..++.|++.....+...+...+..|+++||+.++++.+....+..+|..+.|.+.
T Consensus 302 al~--------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 302 ALS--------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred hcc--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764 356667778889999999999999999999999999999999999999889999999888876
Q ss_pred Hh
Q 008953 519 KV 520 (547)
Q Consensus 519 ~~ 520 (547)
+.
T Consensus 368 ~~ 369 (524)
T PF05977_consen 368 DH 369 (524)
T ss_pred HH
Confidence 63
No 79
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.81 E-value=1.7e-17 Score=172.72 Aligned_cols=156 Identities=17% Similarity=0.092 Sum_probs=114.1
Q ss_pred HHHHHhhhhcC--CChhhHHHHHHHH-----HHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 008953 59 NLITYVINEMH--FSLSNSANIVTNF-----IGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLK 131 (547)
Q Consensus 59 ~l~~yl~~~lg--~~~~~~~~i~~~~-----~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 131 (547)
....++.++.. .++.+.+.+.+.. .+...++.++.|+++||+ ||||++.++.++..++.++++++.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-- 90 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT-- 90 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh--
Confidence 44555555543 3445555544332 223346789999999997 9999999999999999988888643111
Q ss_pred CCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHH
Q 008953 132 PPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVAL 211 (547)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~ 211 (547)
........+++.|+++|++.+...+...+++.|.+|+++ |++..++...+..+|..+++
T Consensus 91 ---------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~ 149 (394)
T TIGR00883 91 ---------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAA 149 (394)
T ss_pred ---------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHH
Confidence 000112357888999999999999999999999999887 88899999888899999998
Q ss_pred HHHHHhh--------cccchhhHHHHHHHHHHHHH
Q 008953 212 TVLVWVQ--------THSGMDVGFGVSAAAMALGL 238 (547)
Q Consensus 212 ~i~~~l~--------~~~g~~~~f~~~~~~~~~~l 238 (547)
.+...+. +..+||+.|++.++..+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 150 LTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 8876553 35689999988665554443
No 80
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.80 E-value=9.5e-17 Score=169.94 Aligned_cols=358 Identities=10% Similarity=0.006 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccch-HHHHHHHHHHHHHHHH
Q 008953 41 FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGS-FWTMLIFGFVELSGFI 119 (547)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr-~~~~~~~~~~~~i~~~ 119 (547)
.+.+..++...++-...++++.|+++++|++..+.|++.+.+.++..+++++.|+++||+ || |+++.++.+...++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence 466677777777777779999999999999999999999999999999999999999996 65 7777777777767766
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccC--------CCCCCcccccc
Q 008953 120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQ--------FDQSNPKQSKK 191 (547)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~--------~~~~~~~~~~~ 191 (547)
+..+.. +...+++.|++.+++.+...+...++..+. .....
T Consensus 85 ~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------ 133 (418)
T TIGR00889 85 FAAQVT-------------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------ 133 (418)
T ss_pred HHHHhc-------------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------
Confidence 666542 345566777777777665555444432211 11111
Q ss_pred cccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhh
Q 008953 192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLK 271 (547)
Q Consensus 192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (547)
|.+.++ .+|.+++|.+++.+.....|. +|++.++..++..+..+. .++.++ +++++. .+..+
T Consensus 134 ~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~-~~~~~~-~~~~~-------- 195 (418)
T TIGR00889 134 PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPV-AKSTAK-MSIKV-------- 195 (418)
T ss_pred Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCC-Cccccc-cCHHH--------
Confidence 334443 468899999998885433455 355544444443333222 222110 000000 00000
Q ss_pred hcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHH
Q 008953 272 RKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTII 351 (547)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (547)
. ...+.. +..++++.....+..++....
T Consensus 196 -------------------------------~-~~~~~~--------------------~~~k~~~~~~~~~~~~~~~~~ 223 (418)
T TIGR00889 196 -------------------------------M-LGLDAF--------------------ILFKNKRMAIFFFFSMLLGAP 223 (418)
T ss_pred -------------------------------H-hhhhHH--------------------HHhcCCCeeeHHHHHHHHHhH
Confidence 0 000000 000001001111111111111
Q ss_pred HHHHHhhhhhhhhhhhhhccccCCCcce-eCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHH
Q 008953 352 FNTILAQLQTFSVQQGSAMNNKLTKNFH-VPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFL 430 (547)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l 430 (547)
....+...+...... ...+.... ++. ...+....+..+..++...+.+++ .+|++ +++.+.++.++
T Consensus 224 ~~~~~~~~~~~~~~~-g~~~~~~~-~~~~~~~g~~~~~~~i~~i~~~~~~g~l----~dr~g-------~r~~l~~~~~~ 290 (418)
T TIGR00889 224 LQITNIFGNGFLHEF-GRNPEFAD-SFVVKNASIWMSLSQFSEIFFILTIPFF----LKRFG-------IKKVMLLSLVA 290 (418)
T ss_pred HHHHHHhHHHHHHHh-cccccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHhC-------cHHHHHHHHHH
Confidence 111111111111110 00000000 000 011222233333344444444444 34543 33557788888
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHH
Q 008953 431 ATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY-CSYSFGFYL 509 (547)
Q Consensus 431 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~-~~~~~G~~l 509 (547)
.+++...+..... ...+.+.+++..++.++++++..+....++.|.+|++.|++++|+.+ ..+++|..+
T Consensus 291 ~~v~~~l~~~~~~----------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i 360 (418)
T TIGR00889 291 WALRFGFFAYGDP----------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL 360 (418)
T ss_pred HHHHHHHHHHcCc----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 8777666655310 01123445667788999999998998999999999999999999997 678999999
Q ss_pred HHHHHHHHHHhhcC
Q 008953 510 SSLLVSFVNKVTSS 523 (547)
Q Consensus 510 g~~i~~~l~~~~~~ 523 (547)
|+.+.+++.+..++
T Consensus 361 Gp~l~G~l~~~~g~ 374 (418)
T TIGR00889 361 GYILSGVMVEKMFA 374 (418)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886543
No 81
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.80 E-value=6.4e-17 Score=170.71 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953 38 AAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG 117 (547)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 117 (547)
.++.++...+...+.+ .+...+.+.+++++|.++.+.+++.+.+.++..++.++.|++.||+ |||+++.++.++..++
T Consensus 4 ~~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 3455555555555555 3444455566889999999999999999999999999999999997 9999999999999998
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953 118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197 (547)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 197 (547)
.+++..+.. ..++..+++.|++.|+|.|...+...+++.+..|+++ |++..+
T Consensus 82 ~~l~~~~~~----------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~ 133 (410)
T TIGR00885 82 AFLFWPAAE----------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLN 133 (410)
T ss_pred HHHHHHHHh----------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHH
Confidence 877655421 1356778899999999999999999999999888777 777788
Q ss_pred hhhhHHhHhHHHHHHHHHHhhcc--------------------------cchhhHHHHHHHHHHHHHHH
Q 008953 198 AAYFAFSTGELVALTVLVWVQTH--------------------------SGMDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 198 ~~~~~~~ig~~~~~~i~~~l~~~--------------------------~g~~~~f~~~~~~~~~~l~~ 240 (547)
+.+...++|..++|.+++.+... .+||++|++.++..++..+.
T Consensus 134 ~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 134 LAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999998877422 36999998766654444333
No 82
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.80 E-value=3.9e-17 Score=168.87 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=116.4
Q ss_pred HHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc----cchHHHH-HHHHHHHHHHHHHHHHhhccCCCC
Q 008953 57 GNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF----LGSFWTM-LIFGFVELSGFILLSVQAHLPQLK 131 (547)
Q Consensus 57 ~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~----~Gr~~~~-~~~~~~~~i~~~l~~~~~~~~~~~ 131 (547)
.....+.+.+++|+|.++.++.... .+...+ .++.|.++||+ +||||.+ +.+.++..+....+++..+
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~----- 79 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP----- 79 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-----
Confidence 3444445556789999999998655 333333 88999999996 4899975 5566666666555555421
Q ss_pred CCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHH
Q 008953 132 PPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVAL 211 (547)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~ 211 (547)
..+.+.+....++.+++.+...+...+++.|.+|+++ |+++.++...+.++|.++++
T Consensus 80 -----------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~ 136 (356)
T TIGR00901 80 -----------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSG 136 (356)
T ss_pred -----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHH
Confidence 1234445555666777778888888999999999887 99999999999999999999
Q ss_pred HHHHHhhcccc--------hhhHHHHHHHHHHHHHHHHH
Q 008953 212 TVLVWVQTHSG--------MDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 212 ~i~~~l~~~~g--------~~~~f~~~~~~~~~~l~~~~ 242 (547)
.+++++..+.| ||..|++.++..+++++..+
T Consensus 137 ~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 137 SLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999988888 99999988776666555444
No 83
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1e-16 Score=162.16 Aligned_cols=362 Identities=14% Similarity=0.037 Sum_probs=236.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
++|+++ +....+...++.+.+...+.+++.+++|+|+.|.+++..+..+...+.+++-|.+.||+ |.|++..++.++.
T Consensus 12 ~~~~L~-~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~ 89 (417)
T COG2223 12 ARRNLW-LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLL 89 (417)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHH
Confidence 345554 55557777788888889999999999999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.+-.+..+++...| +.+.+++.+++.|++.+-+ +...+.+.+.||+++ +|.
T Consensus 90 ~IP~~~~~~a~~~~----------------------~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~ 140 (417)
T COG2223 90 LIPCLGLAFAVTYP----------------------STWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGL 140 (417)
T ss_pred HHHHHHHHHHccCC----------------------chHHHHHHHHHHhccccee-hcccccccccCChhh------hhH
Confidence 99999998885422 2367888888899876654 555688899999998 899
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccc---hhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhh
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSG---MDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLK 271 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g---~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (547)
+.+++. ..|+|..+...+++++....| |+....+..+.++++.+.+++..+..+.+++..++..+ .
T Consensus 141 AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~-------- 209 (417)
T COG2223 141 ALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--A-------- 209 (417)
T ss_pred HHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--h--------
Confidence 999998 899999999999999999888 99888888777777666666644433222222111100 0
Q ss_pred hcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHH
Q 008953 272 RKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTII 351 (547)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (547)
. .+.+...++.+.+..+....+.
T Consensus 210 ----------------------------------~-----------------------~~~v~~~~~~W~lsllY~~tFG 232 (417)
T COG2223 210 ----------------------------------Q-----------------------LKAVFSNKDTWLLSLLYFATFG 232 (417)
T ss_pred ----------------------------------H-----------------------HHHHhcCcchHHHHHHHHHHHH
Confidence 0 0001111222332223333333
Q ss_pred HHHHHh-hhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHH
Q 008953 352 FNTILA-QLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLF 429 (547)
Q Consensus 352 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~ 429 (547)
-+..+. +.+.++..| . +... ..+......++...+..|+.+++.| | +...|.+.+.+.
T Consensus 233 ~Fvgfs~~l~~~~~~~-------f--g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsD--------R---~Gg~rv~~~~f~ 292 (417)
T COG2223 233 GFVGFSAYLPMYLVTQ-------F--GLSPVTAGLIAFLFPLIGALARPLGGWLSD--------R---IGGRRVTLAVFV 292 (417)
T ss_pred HHHHHHHHHHHHHHHh-------c--CCChhhHHHHHHHHHHHHHHHHhccchhhh--------h---ccchhHHHHHHH
Confidence 332222 222233222 1 1111 1122333334444445555555444 3 244455777777
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Q 008953 430 LATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYL 509 (547)
Q Consensus 430 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~l 509 (547)
.++++......... ..+...+....+..++..++..++.+-...-.+...+|+ +-|...|+......+|++.
T Consensus 293 ~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~ 364 (417)
T COG2223 293 GMALAAALLSLFLT-------GFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFF 364 (417)
T ss_pred HHHHHHHHHHcccc-------ccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccc
Confidence 77777776665421 011112333344444444445454454444445555554 6788899999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 008953 510 SSLLVSFVNKVTSS 523 (547)
Q Consensus 510 g~~i~~~l~~~~~~ 523 (547)
-|...+...+.|++
T Consensus 365 lp~~~g~~~~~tg~ 378 (417)
T COG2223 365 LPLAFGVSLDLTGS 378 (417)
T ss_pred hhHHHHHHHHhccc
Confidence 99999988887663
No 84
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.78 E-value=3.3e-16 Score=169.17 Aligned_cols=177 Identities=14% Similarity=0.130 Sum_probs=137.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc----cchHHH-HHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF----LGSFWT-MLI 109 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~----~Gr~~~-~~~ 109 (547)
.+|+.+.++.+.+......+.....+|.++.+ .|.+..+.+...... .. .+..+++|.++||+ +||||. +.+
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~~-~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLVG-QA-YVFKFLWSPLMDRYTPPFLGRRRGWLLA 86 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH-HH-HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence 45667778888888888888777888888765 699998888863222 22 36899999999993 188885 556
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccc
Q 008953 110 FGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS 189 (547)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~ 189 (547)
+.+...++...+++.. | ..+...+.+.+++.+++.+...+...++..|.+|+++
T Consensus 87 ~~i~~~~~~~~~a~~~--~--------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~---- 140 (491)
T PRK11010 87 TQLLLLVAIAAMGFLE--P--------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE---- 140 (491)
T ss_pred HHHHHHHHHHHHHHcC--C--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh----
Confidence 6666767777766642 1 1346667778888999888888889999999999887
Q ss_pred cccccchhhhhhHHhHhHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHHHHHH
Q 008953 190 KKLSSYFNAAYFAFSTGELVALTVLVWVQT-HSGMDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 190 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~-~~g~~~~f~~~~~~~~~~l~~~~ 242 (547)
|+++.++...+.++|..+++.+.+++.+ ..|||..|++.++..++..+..+
T Consensus 141 --rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 --RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988 56999999987766555544443
No 85
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.78 E-value=2.6e-17 Score=174.50 Aligned_cols=346 Identities=15% Similarity=0.170 Sum_probs=220.3
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccc
Q 008953 67 EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEE 146 (547)
Q Consensus 67 ~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (547)
+++++..|.+++.+.+..+..++.+++|+++||+ |-|+++..+.++.++++++...+.+..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~~------------------ 127 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASIG------------------ 127 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 5788999999999999999999999999999997 999999999999999999999987632
Q ss_pred cccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc-cchhh
Q 008953 147 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-SGMDV 225 (547)
Q Consensus 147 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~-~g~~~ 225 (547)
...+++.|+++|++.|...|.+..+.+++.|+++ |++..++.+.+..+|.+++..+.|++++. .||++
T Consensus 128 -----~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s 196 (466)
T KOG2532|consen 128 -----FYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS 196 (466)
T ss_pred -----chhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence 2357899999999999999999999999999988 99999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchh
Q 008953 226 GFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFR 305 (547)
Q Consensus 226 ~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (547)
+|++.+...++..++++..-.+.+.+++.-++ +.+...-+.+.. + .
T Consensus 197 ifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~-----~El~~I~~~k~~----------------~-----~-------- 242 (466)
T KOG2532|consen 197 IFYVFGIVGLIWFILWFLFYSDSPSKHPNISE-----KELKYIEKGKSE----------------A-----H-------- 242 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCH-----HHHHHHHhcccc----------------c-----c--------
Confidence 99998777666555444432222111111110 000000000000 0 0
Q ss_pred HhhhhhhccccCCCCCCCCCcc-ccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCccee-Ccc
Q 008953 306 FLDKACIKVEDGTNKKESPWRL-CTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV-PPA 383 (547)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 383 (547)
.......||+. +++. ..+-..+..+.-...++....+.|+++.. -+ ++++ .++
T Consensus 243 -----------~~~~~~vP~~~i~ts~-----~vwai~~~~f~~~~~~~~l~~y~PtY~~~-------VL--~f~v~~~G 297 (466)
T KOG2532|consen 243 -----------VKKKPPVPYKAILTSP-----PVWAIWISAFGGNWGFYLLLTYLPTYLKE-------VL--GFDVRETG 297 (466)
T ss_pred -----------cCCCCCCCHHHHHcCH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------Hh--CCChhhhh
Confidence 00002334441 1111 11111222333444444555555554432 11 2233 234
Q ss_pred cccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHH
Q 008953 384 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRI--GFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 461 (547)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i--~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 461 (547)
...++..+...+...+.+.+.|++.+| ... .+..+++ .++....++.++.+++... -+.+ .
T Consensus 298 ~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~------------~~~~-~ 360 (466)
T KOG2532|consen 298 FLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSD------------EHRL-L 360 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCC------------Ccch-H
Confidence 455555566666666666666666554 221 2333444 4455555555666555421 1121 1
Q ss_pred HHHHHHHHHHHHHHh-HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 462 TPQFLIFGLSEMFTA-VGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 519 (547)
Q Consensus 462 ~~~~~l~g~g~~~~~-~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~ 519 (547)
.+.....+.+..... +..+.-..+.+ +++-+..+|+.++...+.++++|++++.+.+
T Consensus 361 a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 361 AVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 222222222222222 33222233335 4779999999999999999999999998875
No 86
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.77 E-value=1.5e-16 Score=172.96 Aligned_cols=136 Identities=14% Similarity=0.166 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhH
Q 008953 74 NSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKAS 153 (547)
Q Consensus 74 ~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (547)
+.+++.+...++..++.+++|+++|++ |||++++++.+++.+|.++++++ .+..
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a-------------------------~~~~ 143 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA-------------------------PSWY 143 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh-------------------------hhHH
Confidence 448999999999999999999999996 99999999999999999999998 4577
Q ss_pred HHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc--cchhhHHHHHH
Q 008953 154 IFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH--SGMDVGFGVSA 231 (547)
Q Consensus 154 ~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~--~g~~~~f~~~~ 231 (547)
.++++|++.|+|.|+.....+.+++|..|++. |+...+.++...++|..++..+ ++...+ .+||..+.+..
T Consensus 144 ~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~-~~~~~~~~~~Wr~~~~~~~ 216 (513)
T KOG0254|consen 144 QLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCI-NYGTSKVYAGWRIPLGLAL 216 (513)
T ss_pred HHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHH-hhhhccCCccHHHHHHHHH
Confidence 89999999999999999999999999999888 9999999999999999999555 555444 48998888776
Q ss_pred HHHHHHHHHHH
Q 008953 232 AAMALGLFGVV 242 (547)
Q Consensus 232 ~~~~~~l~~~~ 242 (547)
+..++..+.++
T Consensus 217 i~~~~~~~~~~ 227 (513)
T KOG0254|consen 217 IPAVILALGML 227 (513)
T ss_pred HHHHHHHHHHH
Confidence 66555554433
No 87
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.76 E-value=4.9e-17 Score=170.86 Aligned_cols=140 Identities=13% Similarity=0.077 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHH
Q 008953 75 SANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASI 154 (547)
Q Consensus 75 ~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (547)
-+.+++++.++.++++.++|+++||+ |||..+.++.++..++.+++.++... ....+
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~----------------------~~~e~ 118 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA----------------------PSFEM 118 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh----------------------hhHHH
Confidence 35668889999999999999999997 99999999999888888888776542 34567
Q ss_pred HHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHH--HhhcccchhhHHHHHHH
Q 008953 155 FFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLV--WVQTHSGMDVGFGVSAA 232 (547)
Q Consensus 155 ~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~--~l~~~~g~~~~f~~~~~ 232 (547)
+.++|++.|+..|......+.++.|..|.+- ||..-....++..+|..++..++. .+.+...|.+.+....+
T Consensus 119 li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i 192 (485)
T KOG0569|consen 119 LILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLI 192 (485)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999998 898888888899999998866643 34455569888888777
Q ss_pred HHHHHHHHHHH
Q 008953 233 AMALGLFGVVS 243 (547)
Q Consensus 233 ~~~~~l~~~~~ 243 (547)
..++.++....
T Consensus 193 ~~~~~l~~l~~ 203 (485)
T KOG0569|consen 193 PALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHhc
Confidence 76666655554
No 88
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.75 E-value=1.1e-15 Score=164.68 Aligned_cols=389 Identities=13% Similarity=-0.002 Sum_probs=212.6
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953 58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM 137 (547)
Q Consensus 58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 137 (547)
.....++.+++|-+ .+..|+.+...+...++.++.|.++|.+ |||..++.+.++..+|.+.++.+.
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------ 129 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------ 129 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence 34557888889876 4567888889999999999999999996 999999999999999999999874
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHh
Q 008953 138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV 217 (547)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l 217 (547)
+...++++-.+.|+|.|... .....++|..|.+. |..+..+.....-+....+|.++..+
T Consensus 130 -------------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 130 -------------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred -------------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 46668999999999977665 44556899998766 66665555444444445667776666
Q ss_pred hcccchhhHHHHHHHHHHHHHHH-HHHcCce-eeccCCCCCCchhHHH------HHHHHHhhhcccCCCCcccccccCCC
Q 008953 218 QTHSGMDVGFGVSAAAMALGLFG-VVSGTLY-YRNKRPQGSIFTPIAQ------VFVAAMLKRKQICPSNPQMLHGLNQN 289 (547)
Q Consensus 218 ~~~~g~~~~f~~~~~~~~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (547)
..+.+|||.|++.++...++++. +++.++. +++.+.++.+.++.++ .+.....-.....+.+=.-..
T Consensus 190 ~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~----- 264 (599)
T PF06609_consen 190 AAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYP----- 264 (599)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC-----
Confidence 66778999999987765555433 3333322 2221222222222221 111111111111111100000
Q ss_pred CCCCCCCccccccchhHhhhhhhcccc-CCCCCC-C-CCccccchhHHHHHHHHhH-HHHHHHHHHHHHHHhhhhhhhhh
Q 008953 290 NVPNDSGSVFLTQRFRFLDKACIKVED-GTNKKE-S-PWRLCTVTQVEQVKVLISV-VPIFACTIIFNTILAQLQTFSVQ 365 (547)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 365 (547)
...+.+.+. +..+-........ ...+.+ . +....+.+-.+++|.+... +..++....++.....++.
T Consensus 265 ~~~W~Sa~V-----Ia~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~---- 335 (599)
T PF06609_consen 265 YYPWKSAHV-----IAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQ---- 335 (599)
T ss_pred CCCCCCccc-----hhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 000111111 0000000000000 001111 0 1112233333333222221 2222222333333222222
Q ss_pred hhhhcc-ccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 366 QGSAMN-NKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKK 444 (547)
Q Consensus 366 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~ 444 (547)
|...+- .... +. ....+......++...+..+...+. ++.+ +.++.+.++.+++.++...++....+
T Consensus 336 ~~~~vf~~d~~-~~-~~~~~~s~~~~fg~~~g~~i~g~l~----~~ir------~~Kw~li~~~~~~ta~~Gama~~~~~ 403 (599)
T PF06609_consen 336 QVVNVFGSDPI-SI-TEIGWISSPVGFGSCAGAVILGLLF----SKIR------HIKWQLIFGSVLMTAFCGAMAAVRPD 403 (599)
T ss_pred HHhhhccCCCc-cc-ceeehhhhhHHHHHHHHHHHHHHHH----HHcc------chhHHHHHHHHHHHHHHHHHHHccCC
Confidence 211111 1100 00 0112233333444444443333332 2321 23455677777777666666554221
Q ss_pred hhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 445 RRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 518 (547)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~ 518 (547)
..+. .+...++.++|.+.........+.-..|++..|+++|+....+.+|+.+|..+...+.
T Consensus 404 ----------n~~~--~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 404 ----------NKNA--AIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred ----------Ccch--HHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1122 2344567888888888888888888999999999999999999999999999876543
No 89
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.74 E-value=6.9e-15 Score=154.91 Aligned_cols=167 Identities=14% Similarity=0.078 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc----cchHH-HHHHHHHHHHHH
Q 008953 43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF----LGSFW-TMLIFGFVELSG 117 (547)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~----~Gr~~-~~~~~~~~~~i~ 117 (547)
....+.+...+.....-+|.|+++ .|++.++.+++...... .+..+++|+++||+ +|||| .++++.++..++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 344555566666666778999975 69999999999776665 68999999999995 17765 677777777777
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953 118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197 (547)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 197 (547)
..++.+... ..+.+.+++..++.++..+...+...+++.|.+|+++ |+++.+
T Consensus 82 ~~~l~~~~~----------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~ 133 (402)
T PRK11902 82 IAAMAFCPP----------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAA 133 (402)
T ss_pred HHHHHhcCc----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHH
Confidence 777666411 1334556666666777788888899999999999888 899999
Q ss_pred hhhhHHhHhHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHH
Q 008953 198 AAYFAFSTGELVALTVLVWVQTH-SGMDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 198 ~~~~~~~ig~~~~~~i~~~l~~~-~g~~~~f~~~~~~~~~~l~~ 240 (547)
+...+.++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 99988999999999998888875 59999999877655554443
No 90
>PRK09669 putative symporter YagG; Provisional
Probab=99.72 E-value=4.5e-15 Score=158.48 Aligned_cols=178 Identities=12% Similarity=-0.029 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHH-HHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFW-TMLIFGF 112 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~-~~~~~~~ 112 (547)
|..+.-.+..+..++....+..+++.|+++++|++..+++.+..+..+..++..|+.|+++||. +|||| .++++.+
T Consensus 9 ~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~ 88 (444)
T PRK09669 9 KDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAI 88 (444)
T ss_pred HHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHH
Confidence 4444444556667777777788999999999999999999999999999999999999999993 27755 4556666
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC-CCcccccc
Q 008953 113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ-SNPKQSKK 191 (547)
Q Consensus 113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~ 191 (547)
...+..+++....+.+ .......+++...+.+.+.........++.+|+.++ ++
T Consensus 89 ~~~i~~~l~f~~p~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e------ 143 (444)
T PRK09669 89 PFGVVCLLTFYTPDFG-------------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE------ 143 (444)
T ss_pred HHHHHHHHHHhCCCCC-------------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH------
Confidence 6666665554431100 012344455555556666656666677888998754 33
Q ss_pred cccchhhhhhHHhHhHHHHHHHHHHhhc-------ccchhhHHHHHHHHHHHHHH
Q 008953 192 LSSYFNAAYFAFSTGELVALTVLVWVQT-------HSGMDVGFGVSAAAMALGLF 239 (547)
Q Consensus 192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~-------~~g~~~~f~~~~~~~~~~l~ 239 (547)
|.+..++.....++|..+++.+...+.. ..||+..+.+.++..++..+
T Consensus 144 R~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 144 RHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 7777788777778887777665443322 23577666665554444433
No 91
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.72 E-value=1.5e-14 Score=153.56 Aligned_cols=405 Identities=13% Similarity=0.047 Sum_probs=229.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhh----cccchHHHHHHH-H
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSD----SFLGSFWTMLIF-G 111 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laD----r~~Gr~~~~~~~-~ 111 (547)
++++.++.+.+..++++-...+++++|+ +++|.+..+.+++..+..+...+..|+.|+++| |+ ||||.++++ .
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~ 81 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGA 81 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHH
Confidence 5677788888888888888888888887 569999999999999999999999999999999 46 999998875 5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953 112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK 191 (547)
Q Consensus 112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 191 (547)
+...++.++++.+.++..+..++.+ ++ ........+.++..+..++.....+...++++|.+|+++++
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~---~~-----~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~---- 149 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLD---KK-----TKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR---- 149 (477)
T ss_pred HHHHHHHHHHHhCchhhhhcccccc---cc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----
Confidence 5566666777665432221110000 00 00011123334444455677777778889999999987621
Q ss_pred cccchhhhhhHHhHhHHHHHHHHHHh--hccc-------------chhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCC
Q 008953 192 LSSYFNAAYFAFSTGELVALTVLVWV--QTHS-------------GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 256 (547)
Q Consensus 192 r~~~~~~~~~~~~ig~~~~~~i~~~l--~~~~-------------g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 256 (547)
++.++++.....++|..+|+.++++. .+.. +.+..|++.++..++..+......++.+..++++.
T Consensus 150 ~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~ 229 (477)
T TIGR01301 150 TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF 229 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc
Confidence 35688889999999999999998865 2211 46788888777777666655554444321111100
Q ss_pred CchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHH
Q 008953 257 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQV 336 (547)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (547)
+ ++ + .++.++ ......+.+ -.+..
T Consensus 230 ~-~~--------------------~----~~~~~~--------~~~~~~~~~-----------------------i~~~~ 253 (477)
T TIGR01301 230 I-NS--------------------E----AAPPSK--------HGEEAFFGE-----------------------LFGAF 253 (477)
T ss_pred h-hh--------------------h----cccccc--------cchhhhHHH-----------------------HHHHH
Confidence 0 00 0 000000 000000000 01111
Q ss_pred HHHHhH-HHHHHHHHHHHHHHh---hhhhhhhhhhhhc--cccCCCcceeC---cccccccchhhHHHHHhhhhhhhhhh
Q 008953 337 KVLISV-VPIFACTIIFNTILA---QLQTFSVQQGSAM--NNKLTKNFHVP---PASLQSIPYIMLVILVPLYDKFFVPF 407 (547)
Q Consensus 337 ~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~ 407 (547)
++.... -.++..++..|+.+. ...+-++.+.-+- +..-. .+... ..+....+.+... +...++.++
T Consensus 254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~-~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l 328 (477)
T TIGR01301 254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA-KYDDGVRAGAFGLMLNSVVLG----ITSIGMEKL 328 (477)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 111110 111222233332222 2222222111000 00000 00000 0011111122222 223333344
Q ss_pred hhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCC-----CCccc-hHHHHHHHHHHHHHHHHHhHHHH
Q 008953 408 ARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDS-ALDS-----GKTLS-IFSITPQFLIFGLSEMFTAVGLI 480 (547)
Q Consensus 408 ~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~-~~~~-----~~~~~-~~~l~~~~~l~g~g~~~~~~~~~ 480 (547)
.+|.++|+ +.-.++.++.+++++...+......+. +.++ ...+. .+.+++.+.+.|+.........+
T Consensus 329 ~~~~g~~k------~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPf 402 (477)
T TIGR01301 329 CRGWGAGK------RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPF 402 (477)
T ss_pred HHHhccch------hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhH
Confidence 45554321 334678788888888777654211000 0000 01112 36677788899999999999999
Q ss_pred HHHHhhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008953 481 EFFYKQSLK--GMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTS 522 (547)
Q Consensus 481 ~~~~~~~p~--~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~~ 522 (547)
+.+++..|+ +.+|..+|+.|....+.+.+.+...+.+.+..+
T Consensus 403 al~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g 446 (477)
T TIGR01301 403 ALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG 446 (477)
T ss_pred HHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999995 455999999999999999999998888666544
No 92
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.70 E-value=6.8e-15 Score=146.26 Aligned_cols=121 Identities=18% Similarity=0.129 Sum_probs=106.2
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccc
Q 008953 66 NEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCE 145 (547)
Q Consensus 66 ~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (547)
++.+.+..-+|.+-+.|.+..++.++.+|.++||| |||++++++++..++...+.+.+
T Consensus 61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S--------------------- 118 (451)
T KOG2615|consen 61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS--------------------- 118 (451)
T ss_pred CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 34445566789999999999999999999999998 99999999999999988888887
Q ss_pred ccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhc
Q 008953 146 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT 219 (547)
Q Consensus 146 ~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~ 219 (547)
.++..+.++|++.|+..|-. ....++++|.+++++ |+.+++....+..+|.++||+++|++..
T Consensus 119 ----~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 ----RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ----HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 34556777799999988865 456799999999988 9999999999999999999999999988
No 93
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.70 E-value=7.4e-15 Score=152.63 Aligned_cols=156 Identities=10% Similarity=0.005 Sum_probs=135.2
Q ss_pred hhHHHHHHHhhhhcCCChhh-HHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008953 55 AVGNNLITYVINEMHFSLSN-SANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPP 133 (547)
Q Consensus 55 ~~~~~l~~yl~~~lg~~~~~-~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 133 (547)
...++..+|+.+++|+++.| .+.+.+.+..++.++.+++|+++||+ |.|+++.++.+...+..++++++.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~-------- 113 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT-------- 113 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH--------
Confidence 34577788999999999999 99999999999999999999999996 999999999999999999999874
Q ss_pred CCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHH
Q 008953 134 KCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTV 213 (547)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i 213 (547)
+...+.+.|++.|++.|... ....++...+|+++ |+++.++.+.+.++|.++++.+
T Consensus 114 -----------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L 169 (511)
T TIGR00806 114 -----------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVL 169 (511)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 36679999999999999999 88999999999888 9999999999999999999999
Q ss_pred HHHhhcccchhhHHH---HHHHHHHHHHHHHHHc
Q 008953 214 LVWVQTHSGMDVGFG---VSAAAMALGLFGVVSG 244 (547)
Q Consensus 214 ~~~l~~~~g~~~~f~---~~~~~~~~~l~~~~~~ 244 (547)
++++ ..+||++-+. ++.....+++++.++.
T Consensus 170 ~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 170 GQLL-VTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9994 4678986543 4455555666555553
No 94
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.70 E-value=1.8e-15 Score=167.54 Aligned_cols=197 Identities=16% Similarity=0.141 Sum_probs=148.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
+|.+...+....+....+.+......+.+.++++++..+.|++.+.+.++..++.++.|+++||+ ||||.+.++.++.+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~ 109 (633)
T TIGR00805 31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMG 109 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHH
Confidence 45444444445555556667777777888899999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCC-------C-----------CCC----------cccccc--cchhHHHHHHHHHHHHh
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMV-------T-----------DSE----------NCEEAK--GFKASIFFLALYLVAIG 165 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~-------~-----------~~~----------~~~~~~--~~~~~~~~~~~~l~gig 165 (547)
++.+++++...+ .++|+.. + ++. .+.... ...+..++++|+++|+|
T Consensus 110 lg~ll~alphf~----~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG 185 (633)
T TIGR00805 110 LGSFLLSLPHFL----SGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIG 185 (633)
T ss_pred HHHHHHhChHHh----cCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhcc
Confidence 999998875321 1111100 0 000 010001 12356788999999999
Q ss_pred ccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhccc---------------------c-h
Q 008953 166 SGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS---------------------G-M 223 (547)
Q Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~---------------------g-~ 223 (547)
.+...+...+++.|.+|+++ |+.++++++....+|.++|+++++++.+.+ | |
T Consensus 186 ~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaW 259 (633)
T TIGR00805 186 ATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAW 259 (633)
T ss_pred CCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHH
Confidence 99999999999999999988 999999999999999999999999887542 2 6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 008953 224 DVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 224 ~~~f~~~~~~~~~~l~~~~~ 243 (547)
+..|++.+++.++..+.++.
T Consensus 260 wl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 260 WIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77787766655554444443
No 95
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.70 E-value=1.3e-14 Score=156.14 Aligned_cols=368 Identities=9% Similarity=-0.042 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhh----cccch-HHHHHHHHHHH
Q 008953 40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSD----SFLGS-FWTMLIFGFVE 114 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laD----r~~Gr-~~~~~~~~~~~ 114 (547)
+.-.+..+..++....+..+++.|+++.+|+++..+|.+..+.-+..++..|+.|+++| |+ || |+.++++.+..
T Consensus 9 ~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~ 87 (473)
T PRK10429 9 LSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLAN 87 (473)
T ss_pred HhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHH
Confidence 33445666777888888899999999999999999999999999999999999999999 65 98 55556677777
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCC-CCCcccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFD-QSNPKQSKKLS 193 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~-~~~~~~~~~r~ 193 (547)
.++.+++....+.+ .......+++...+..++.........++.+|..+ +++ |.
T Consensus 88 ~i~~~llf~~p~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~ 142 (473)
T PRK10429 88 SVVLFLLFSAHLFE-------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------RE 142 (473)
T ss_pred HHHHHHHHcCCCCC-------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HH
Confidence 77766664321100 01123344455556677777777788889899885 444 78
Q ss_pred cchhhhhhHHhHhHHHHHHHHHHhhc-------ccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHH
Q 008953 194 SYFNAAYFAFSTGELVALTVLVWVQT-------HSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFV 266 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~~~~i~~~l~~-------~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (547)
+..++-....++|+.+.+.+...+.. ..+|+....+.++..+++.+..+...++.. ++++.++.
T Consensus 143 ~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~-~~~~~~~~-------- 213 (473)
T PRK10429 143 QLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY-SSDNQVSA-------- 213 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC-Cccccccc--------
Confidence 88887666677776666555443321 124555544444443433333332222211 00000000
Q ss_pred HHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHH
Q 008953 267 AAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIF 346 (547)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (547)
..++.+..+..+ ...++ |.+... +
T Consensus 214 ---------------------------------~~~~~~~~~~~~-------------------~~~~n-~~~~~l---l 237 (473)
T PRK10429 214 ---------------------------------EGSHLTLKDIVA-------------------LIYKN-DQLSCL---L 237 (473)
T ss_pred ---------------------------------cccCCCHHHHHH-------------------HHhcC-HHHHHH---H
Confidence 000000011000 00011 111111 1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHH
Q 008953 347 ACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGF 426 (547)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~ 426 (547)
...+..+.......+...+. .....+ .....+.+..+..+..++..++..++ .+|.+ +++.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~y~---~~y~~~--~~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~g-------kk~~~~~ 301 (473)
T PRK10429 238 GMALAYNIASNIINGFAIYY---FTYVIG--DADLFPYYLSYAGAANLVTLILFPRL----VKSLS-------RRILWAG 301 (473)
T ss_pred HHHHHHHHHHHHHhhheeeE---EEEECC--CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcC-------cHHHHHH
Confidence 11222222222111111111 000110 00001122223334445555555544 34443 3344566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc-------hhhHHHHHHHH
Q 008953 427 GLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSL-------KGMQAFLTAMT 499 (547)
Q Consensus 427 g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~rg~~~g~~ 499 (547)
+.++..++.+.+...... ...+.+.+++..++.+++.+...+..+++..|..+ .+..|...|..
T Consensus 302 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~ 372 (473)
T PRK10429 302 ASIFPVLSCGVLLLMGLA---------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQ 372 (473)
T ss_pred HHHHHHHHHHHHHHHhcc---------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHH
Confidence 666655555444322000 01234555667778899999999888899998876 44467789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 008953 500 YCSYSFGFYLSSLLVSFVNKVTSS 523 (547)
Q Consensus 500 ~~~~~~G~~lg~~i~~~l~~~~~~ 523 (547)
++...+|..+++.+.+++.+..+-
T Consensus 373 ~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 373 TMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999998886553
No 96
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.69 E-value=1.3e-13 Score=144.38 Aligned_cols=351 Identities=13% Similarity=0.071 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHH
Q 008953 41 FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFIL 120 (547)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l 120 (547)
.+....++..+.+-...++++.|+++ .|+|..|.|.+.+...+...+.+++.|+++||+..+||.+.+..++..+...+
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 45555666666666677889999976 78999999999999999999999999999999745677776666655554444
Q ss_pred HHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhh
Q 008953 121 LSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY 200 (547)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 200 (547)
.... .+.+.+++..++..+......|...++..+...+ +++-++...
T Consensus 85 ~~~~-------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iR 131 (400)
T PF03825_consen 85 LAFS-------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIR 131 (400)
T ss_pred HHHh-------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcch
Confidence 4433 2234455555556666666666666666665542 233366666
Q ss_pred hHHhHhHHHHHHH-HHHhhcccc---hhhHHHHHHHHHHH-HHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953 201 FAFSTGELVALTV-LVWVQTHSG---MDVGFGVSAAAMAL-GLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI 275 (547)
Q Consensus 201 ~~~~ig~~~~~~i-~~~l~~~~g---~~~~f~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (547)
.-+++|-+++... .+++....+ ..+.+++.+...++ +...+. .++. +++++...+
T Consensus 132 lwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~--lp~~---~~~~~~~~~--------------- 191 (400)
T PF03825_consen 132 LWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF--LPKT---PPKRSAKES--------------- 191 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh--CCCC---ccccccCCC---------------
Confidence 6677777766443 233333322 22345544433222 222221 1221 111110000
Q ss_pred CCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHH
Q 008953 276 CPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTI 355 (547)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (547)
.++....+.. + -.++++.....+..++.++.. ..
T Consensus 192 -------------------------~~~~~~~~~~---------------~-----llk~~~~~~Fll~~~l~~~~~-~~ 225 (400)
T PF03825_consen 192 -------------------------VKKLLGLDAL---------------K-----LLKNPRFLVFLLAAFLIGISH-AA 225 (400)
T ss_pred -------------------------cccccchHHH---------------H-----HhcCccHHHHHHHHHHHHHHH-HH
Confidence 0000000000 0 011111111111111222222 22
Q ss_pred HhhhhhhhhhhhhhccccCCCcceeC-cccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 008953 356 LAQLQTFSVQQGSAMNNKLTKNFHVP-PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS 434 (547)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~ 434 (547)
++...+.+..+.. ++... .+....+..+ .|....-+.+|.-+| ++.++.+.++.+..++-
T Consensus 226 ~~~f~~~yl~~~g--------g~~~~~~g~~~~l~~~--------aEi~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR 286 (400)
T PF03825_consen 226 YYTFFSIYLQELG--------GYSGSTIGILWALGVV--------AEIPFFFFSGRFLKR---FGIKWLLLLALVAYAVR 286 (400)
T ss_pred HHHHHHHHHHHcc--------cchhhHHHHHHHHHHH--------HHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHH
Confidence 2222222222111 01000 1111112222 222221122233333 46778899999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCccchHH----HHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHH-HHHHHHHH
Q 008953 435 MISAALMEKKRRDSALDSGKTLSIFS----ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYC-SYSFGFYL 509 (547)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~-~~~~G~~l 509 (547)
..+++... .+.+. +.....++|+..++...+...|+.+.+|++.|++++++++. ..++|+.+
T Consensus 287 ~~l~a~~~-------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i 353 (400)
T PF03825_consen 287 WLLYAYFS-------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAI 353 (400)
T ss_pred HHHHHHhc-------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH
Confidence 99888762 13222 23334579999999999999999999999999999999886 57999999
Q ss_pred HHHHHHHHHHhhcC
Q 008953 510 SSLLVSFVNKVTSS 523 (547)
Q Consensus 510 g~~i~~~l~~~~~~ 523 (547)
|..+.|++.+..+.
T Consensus 354 G~~igG~l~~~~g~ 367 (400)
T PF03825_consen 354 GSLIGGWLYDAFGA 367 (400)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999986544
No 97
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.69 E-value=8.8e-14 Score=145.83 Aligned_cols=176 Identities=15% Similarity=-0.006 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHH--HHHHHHHHHHHHhhh-hHHhhcccchHHHHHHHHHHH-
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANI--VTNFIGTVFLLALLG-GYLSDSFLGSFWTMLIFGFVE- 114 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i--~~~~~~~~~~~~~~~-G~laDr~~Gr~~~~~~~~~~~- 114 (547)
...+....+.+...+....+.+|.|+++ .|.+..+.|.. .........+..++. ++.+||+ ||||..++...+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 4456666777777777777888888864 79999999997 355677777777777 6689996 9999876654332
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.+....+.... +. ......+.....+.++..+...+...++..|..++++ ++.
T Consensus 81 ~~~~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~ 133 (390)
T TIGR02718 81 SACLASLALVG--PD-------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAK 133 (390)
T ss_pred HHHHHHHHcCC--cc-------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhH
Confidence 21222222110 00 0111222333333444455555555556566555444 566
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+.+....+..+|..+++.+.+++.++.|||..|++.++..++..+..+.
T Consensus 134 ~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 134 GNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666767778899999988889999999999999887766655554443
No 98
>PRK09848 glucuronide transporter; Provisional
Probab=99.68 E-value=4.7e-14 Score=150.76 Aligned_cols=366 Identities=10% Similarity=-0.013 Sum_probs=196.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHHHH-HHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFWTM-LIFGF 112 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~-~~~~~ 112 (547)
+..+.-.+..+..++.+.....+++.|+++.+|++..++|.+.....+...+..++.|+++||. +||||.. .++.+
T Consensus 8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 3333444566677777777778899999999999999999999999999999999999999994 3777754 55555
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953 113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL 192 (547)
Q Consensus 113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 192 (547)
...+...++..... . .........+++...+.+++.+...+...++..++.++.+ + |
T Consensus 88 ~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---r 144 (448)
T PRK09848 88 PLMIFSVLVFWVPT--D----------------WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S---R 144 (448)
T ss_pred HHHHHHHHHHhCcC--C----------------CCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H---H
Confidence 55544444322110 0 0001122334445556777778888777777776665432 1 5
Q ss_pred ccchhhhhhH-----HhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHH
Q 008953 193 SSYFNAAYFA-----FSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVA 267 (547)
Q Consensus 193 ~~~~~~~~~~-----~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (547)
.+..++-.+. .+++..++|.+.+.........+..+. .+..+++++..+......+..++++.+.....+.+..
T Consensus 145 ~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 223 (448)
T PRK09848 145 ARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQT 223 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCCCHHHHHHH
Confidence 5555544332 345666677665543221111111111 1111222221111111111110000000000000000
Q ss_pred HHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHH
Q 008953 268 AMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFA 347 (547)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (547)
..++++... ...
T Consensus 224 ----------------------------------------------------------------l~~n~~f~~----~~~ 235 (448)
T PRK09848 224 ----------------------------------------------------------------LKRNRPLFM----LCI 235 (448)
T ss_pred ----------------------------------------------------------------HhCCchHHH----HHH
Confidence 001111111 111
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccc-hhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHH
Q 008953 348 CTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIP-YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGF 426 (547)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~ 426 (547)
...+.+..+....+...+ ..+..++ .....+.+...+ .+..++..++..++ .+|. ++++.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~---~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~r~-------g~~~~~~~ 299 (448)
T PRK09848 236 GALCVLISTFAVSASSLF---YVRYVLN--DTGLFTVLVLVQNLVGTVASAPLVPGM----VARI-------GKKNTFLI 299 (448)
T ss_pred HHHHHHHHHHHHhhhhee---eEeeecC--ChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh-------CcHHHHHH
Confidence 112222222222211110 1111111 000001111111 22334444444433 3343 34466788
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchh-------hHHHHHHHH
Q 008953 427 GLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG-------MQAFLTAMT 499 (547)
Q Consensus 427 g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~-------~rg~~~g~~ 499 (547)
|.++.+++.+...+.. ..+.+.+.+..++.++|+++..+..++...+..|.+ .+|...|++
T Consensus 300 g~~~~~i~~~~~~~~~------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~ 367 (448)
T PRK09848 300 GALLGTCGYLLFFWVS------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLF 367 (448)
T ss_pred HHHHHHHHHHHHHHcC------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHH
Confidence 8888877776665431 234555666778899999999999999999888765 469999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 008953 500 YCSYSFGFYLSSLLVSFVNKVTS 522 (547)
Q Consensus 500 ~~~~~~G~~lg~~i~~~l~~~~~ 522 (547)
++.+.+|..+++.+.+.+.+..+
T Consensus 368 ~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 368 SFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999998887654
No 99
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.66 E-value=9.2e-15 Score=155.29 Aligned_cols=359 Identities=13% Similarity=0.028 Sum_probs=223.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhh----cccchHHHHH-HHHHHHHHHHHH
Q 008953 46 QAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSD----SFLGSFWTML-IFGFVELSGFIL 120 (547)
Q Consensus 46 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laD----r~~Gr~~~~~-~~~~~~~i~~~l 120 (547)
.+..++.......++..|+++.+|+++..++.+..+..+..++..|+.|.++| |+ ||||..+ ++.+...++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l 88 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence 45556666667778999999999999999999999999999999999999999 76 9777555 566777777777
Q ss_pred HHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhh
Q 008953 121 LSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY 200 (547)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 200 (547)
+.... |.- .........+++..++..++.........++.+|..++++ + |.+..++-.
T Consensus 89 lf~~~--p~~---------------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--~---R~~l~~~~~ 146 (428)
T PF13347_consen 89 LFSPP--PAG---------------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--E---RTRLSSWRM 146 (428)
T ss_pred hhccc--cch---------------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh--h---hhhHHHHHH
Confidence 66530 100 0111233345666666788888888888999999988542 1 788888877
Q ss_pred hHHhHhHHHHHHHHHHhhccc-------chhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhc
Q 008953 201 FAFSTGELVALTVLVWVQTHS-------GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRK 273 (547)
Q Consensus 201 ~~~~ig~~~~~~i~~~l~~~~-------g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (547)
....+|..+...+.+.+.+.. +|++...+.++..++..+......++.+.+++++++...
T Consensus 147 ~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~------------- 213 (428)
T PF13347_consen 147 IFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKIS------------- 213 (428)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccc-------------
Confidence 777777766555655543222 577777766655555555444433331111111110000
Q ss_pred ccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHH
Q 008953 274 QICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFN 353 (547)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (547)
+.+. ++ +-.+++. +.. ++...++.+
T Consensus 214 --------------------------------~~~~---------------~~----~~~~nr~-~~~---l~~~~~~~~ 238 (428)
T PF13347_consen 214 --------------------------------LRDS---------------LR----SLFRNRP-FRI---LLLAFFLQW 238 (428)
T ss_pred --------------------------------cccc---------------hh----hhcccch-HHH---HHHHHHHHH
Confidence 0000 00 0011111 111 111222222
Q ss_pred HHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHH
Q 008953 354 TILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATF 433 (547)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i 433 (547)
.......+...+...+ .++ .....+.+.....+..++..|+..++. +|.++| +.+..+.++.++
T Consensus 239 ~~~~~~~~~~~y~~~~---vl~--~~~~~~~~~~~~~~~~~v~~~~~~~l~----~r~gk~-------~~~~~~~~~~~~ 302 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTY---VLG--NEGLISIFMLIFFVASIVGSPLWGRLS----KRFGKK-------KVYIIGLLLAAL 302 (428)
T ss_pred hhhhhhhhHHHHHHHH---Hhc--CchhhHHHHHHHHHHHHHHHHHHHHHH----HHccce-------eehhhhHHHHHH
Confidence 2222222111111111 111 011122333444555666667766554 454333 447888888888
Q ss_pred HHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcch-------hhHHHHHHHHHHHHHHH
Q 008953 434 SMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK-------GMQAFLTAMTYCSYSFG 506 (547)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~-------~~rg~~~g~~~~~~~~G 506 (547)
+.++..+.. ..+.+++.+..++.|++.+..++..++...|..+. +..|...|++++...+|
T Consensus 303 ~~~~~~~~~------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 303 GFLLLFFLG------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred HHHHHHHHH------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence 888777763 14778888899999999999998888888887774 44799999999999999
Q ss_pred HHHHHHHHHHHHHhhcC
Q 008953 507 FYLSSLLVSFVNKVTSS 523 (547)
Q Consensus 507 ~~lg~~i~~~l~~~~~~ 523 (547)
..+++.+.+.+....+-
T Consensus 371 ~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 371 QGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999988887654
No 100
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.66 E-value=5.6e-14 Score=153.16 Aligned_cols=140 Identities=17% Similarity=0.015 Sum_probs=124.2
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccc
Q 008953 66 NEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCE 145 (547)
Q Consensus 66 ~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (547)
+..+.+.....+..+++.++..+++++.|.++||+ |||++++++.++.+++.++.+++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a--------------------- 168 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA--------------------- 168 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 55677888889999999999999999999999995 99999999999999999999998
Q ss_pred ccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhh
Q 008953 146 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDV 225 (547)
Q Consensus 146 ~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~ 225 (547)
.++..+++.|++.|++.++...+...++.|.+++++ |+.+.++ ......++.+++.+++++.. +||+
T Consensus 169 ----~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~ 235 (521)
T KOG0255|consen 169 ----PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRW 235 (521)
T ss_pred ----CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHH
Confidence 457789999999999999999999999999999998 8888888 77778888889999899887 7999
Q ss_pred HHHHHHHHHHHHHHH
Q 008953 226 GFGVSAAAMALGLFG 240 (547)
Q Consensus 226 ~f~~~~~~~~~~l~~ 240 (547)
.+++......+.++.
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 236 LFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999876665555444
No 101
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.65 E-value=5.3e-14 Score=150.97 Aligned_cols=384 Identities=12% Similarity=0.072 Sum_probs=218.5
Q ss_pred chHH-HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccc-----hHHHHHH
Q 008953 36 MKAA-VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLG-----SFWTMLI 109 (547)
Q Consensus 36 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G-----r~~~~~~ 109 (547)
++.. ..+....+.+... +.+...++.++.+++|+++++.+...+...+...+-.+ +|.++||+ + ||+.+++
T Consensus 24 ~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~ 100 (468)
T TIGR00788 24 PRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVL 100 (468)
T ss_pred cchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHH
Confidence 3443 3444467777777 77888889999999999999998888888888777555 99999997 7 6777777
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccc
Q 008953 110 FGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS 189 (547)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~ 189 (547)
+.++.. ...+..++.. .+......+.+++.+++.+.......+++.|..+ ++++.
T Consensus 101 ~~~l~~-~~~~~~l~~~----------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~- 155 (468)
T TIGR00788 101 SGLLGS-AILYGLLPGK----------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA- 155 (468)
T ss_pred HHHHHH-HHHHHhcccc----------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc-
Confidence 765542 1222222210 0122233346777888888888889999999998 43222
Q ss_pred cccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHH
Q 008953 190 KKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAM 269 (547)
Q Consensus 190 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (547)
++...+..+...++|..+++.++|++.+..+|+..|++.++..++.++.....+++.....++.++... .
T Consensus 156 --~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~---~----- 225 (468)
T TIGR00788 156 --GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLE---M----- 225 (468)
T ss_pred --CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccch---h-----
Confidence 455666777778899999999999999999999999987766665544333322211000111000000 0
Q ss_pred hhhcccCCCCcccccccCCCCCCCCCCccccccch-hHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHH
Q 008953 270 LKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRF-RFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFAC 348 (547)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (547)
.+. .. ..... ...+. .+ .-+ ...+ .+.++..+.+.+.
T Consensus 226 -~~~-----------------------~~-~~~~~~~~~~~--~~---------~l~-----~~l~-~~~i~~~l~fifl 263 (468)
T TIGR00788 226 -NMA-----------------------LL-TLGVLANVKVQ--IL---------GLR-----GAIQ-LLEIAKPLIFIFL 263 (468)
T ss_pred -hhh-----------------------hh-hhhHHHHHHHH--HH---------HHH-----HHHh-cHHHHHHHHHHHH
Confidence 000 00 00000 00000 00 000 0000 1112211111111
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHH
Q 008953 349 TIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFG 427 (547)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g 427 (547)
. +..........+..+ +..+ |++. ..+.......++.+++..+.+++ .+| .+.++.+.++
T Consensus 264 ~--~~~~~~~~~~~f~~~----~~~l--G~s~~~~G~~~~~~~v~~i~g~~~~~~~----~~~-------~~~r~~l~~~ 324 (468)
T TIGR00788 264 S--YANLPGASGSVFCAT----TQCL--PGGPSFSGMSKVVGNLGSLCGVGGYDRF----LKT-------FPYRLLFGVT 324 (468)
T ss_pred H--HhhcCCCCceeEEEE----cccC--CCCcchhhhHHHHHHHHHHHHHHHHHHH----Hhh-------CCHHHHHHHH
Confidence 0 111111111111111 1111 1111 11222333334445555454433 223 3566777888
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 008953 428 LFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGF 507 (547)
Q Consensus 428 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~ 507 (547)
.++.+++.+....... +-+. . ....+.+++....++.+++.++...+...++.+..|++.+|+..|+.+...++|.
T Consensus 325 ~~l~~~~~~~~~~l~~-~~~~--~-~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~ 400 (468)
T TIGR00788 325 TLLYTLSSLFDLILVK-RWNL--A-FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGS 400 (468)
T ss_pred HHHHHHHHhCceeeee-cccc--c-cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHH
Confidence 8888776654321100 0000 0 0001233455567788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 008953 508 YLSSLLVSFVNKVTS 522 (547)
Q Consensus 508 ~lg~~i~~~l~~~~~ 522 (547)
.+++.+.+.+.+..+
T Consensus 401 ~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 401 SVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999998888644
No 102
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.62 E-value=5.7e-13 Score=134.31 Aligned_cols=150 Identities=16% Similarity=0.135 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953 40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI 119 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 119 (547)
+.+....+...+.. .....+.+++++.++++..|++++-.++..++.++.+..|++.+|+ |+|+.++.++.+..+|..
T Consensus 16 v~~t~lFfl~G~~~-~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 16 VLLTSLFFLWGFIT-CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHHh-hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 33333334444444 4556678888999999999999999999999999999999999997 999999999999999998
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953 120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA 199 (547)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 199 (547)
+..=+++ ...+..++.+.++.+.|.+.......+++....+++.. ..-+++.
T Consensus 94 lF~pAa~----------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a------~~rlnl~ 145 (422)
T COG0738 94 LFWPAAS----------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA------AFRLNLA 145 (422)
T ss_pred HHhhhhh----------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH------HHHHHHH
Confidence 8865433 25577899999999999999999999999999998652 2337777
Q ss_pred hhHHhHhHHHHHHHHHHhhc
Q 008953 200 YFAFSTGELVALTVLVWVQT 219 (547)
Q Consensus 200 ~~~~~ig~~~~~~i~~~l~~ 219 (547)
+....+|++++|.+++++..
T Consensus 146 q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 146 QAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHhhhhHHHHHHHHHHHHHH
Confidence 77788999999999998876
No 103
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.62 E-value=2.1e-13 Score=140.97 Aligned_cols=366 Identities=12% Similarity=0.057 Sum_probs=206.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
++.|......++..++.-...++.+.+++++.|++.+|.|.+.++..+...+.+|+.|.++||+ |.||-++..+....+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 5677777777777777777779999999999999999999999999999999999999999996 977765544333222
Q ss_pred --HHHHH-HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 117 --GFILL-SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 117 --~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
+-... ... |.+ + .| +.++.++.++..+.......+. .|.+-++..++ .+
T Consensus 86 l~~pff~~v~~---pll-----------------~-~n---~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~sr~---~~ 137 (412)
T PF01306_consen 86 LFGPFFIYVFG---PLL-----------------Q-SN---FWLGAIIGGIYLGLVFNAGVPL-SEAYAERVSRR---NG 137 (412)
T ss_dssp TCHHHHHHTHH---HHH-----------------H-TT----HHHHHHTTTTTTTTTTTHHHH-HHHHHHHHHHH---HS
T ss_pred HHHHHHHHHHH---HHH-----------------H-HH---HHHHHHHHHHHHHHHHcccchH-HHHHHHHHHHH---hc
Confidence 22222 111 000 0 11 2333333344434333333232 24443332111 23
Q ss_pred cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhc
Q 008953 194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRK 273 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (547)
-=+|-..+-+.+|.+++..++|++.+ .+-+..|++..+..++.+++.+..++...++.+..+..
T Consensus 138 feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~--------------- 201 (412)
T PF01306_consen 138 FEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL--------------- 201 (412)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS---------------
T ss_pred CCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc---------------
Confidence 33566778889999999999999986 45667788765544444444443332221111110000
Q ss_pred ccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHH
Q 008953 274 QICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFN 353 (547)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (547)
..+.++.+..|.. +..+++ +++....+.......+
T Consensus 202 ------------------------~~~~~~~~~~~~~--------------------~l~k~~-~fw~~~l~v~g~~~~Y 236 (412)
T PF01306_consen 202 ------------------------GAKKDKVSLKDVL--------------------SLFKMR-NFWFFVLFVIGVAAIY 236 (412)
T ss_dssp ------------------------SS------HHHHH--------------------HHTTSH-HHHHHHHHHHHHHHHH
T ss_pred ------------------------ccCCCCCcHHHHH--------------------HHhcch-hHHHHHHHHHHHHHHH
Confidence 0000010111111 011222 3333333333333344
Q ss_pred -HHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHH
Q 008953 354 -TILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLAT 432 (547)
Q Consensus 354 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~ 432 (547)
...+|.+.++..+....+.. - ..-+...++..+.-.+.-.+..++ .+| +++++.+.++..+++
T Consensus 237 ~vfdqqf~~y~~~~f~~~~~g----~-~~~G~l~s~~v~~E~~~m~~~p~l----i~r-------ig~k~~Lllag~i~~ 300 (412)
T PF01306_consen 237 DVFDQQFPIYFASFFQSAGQG----N-QMYGYLWSVQVFLEALMMFFSPWL----INR-------IGAKNLLLLAGVIMA 300 (412)
T ss_dssp HHHHHHHHHHHHHTSSSHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHH----HHH-------H-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccC----h-hHHhHHHHHHHHHHHHHHHHHHHH----HHh-------cChHhHHHHHHHHHH
Confidence 44444444433211111000 0 001111122222211111122222 334 366777888889999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHH-HHHHHHHHHHHH
Q 008953 433 FSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMT-YCSYSFGFYLSS 511 (547)
Q Consensus 433 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~-~~~~~~G~~lg~ 511 (547)
+-....++. ++++++++.-.++++-..+...+..-|+++.+|++..++...+. ++..++|..+.+
T Consensus 301 iRi~~~~~~--------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s 366 (412)
T PF01306_consen 301 IRIIGSGFA--------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILS 366 (412)
T ss_dssp HHHHHHHT----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHhhh--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 998888875 47788888999999999999999999999999999999988885 578999999999
Q ss_pred HHHHHHHHhhc
Q 008953 512 LLVSFVNKVTS 522 (547)
Q Consensus 512 ~i~~~l~~~~~ 522 (547)
.+.|.+.+..+
T Consensus 367 ~~~G~lyd~~G 377 (412)
T PF01306_consen 367 PLAGYLYDRIG 377 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHhhHhhcC
Confidence 99998888643
No 104
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.61 E-value=7.8e-13 Score=131.46 Aligned_cols=346 Identities=17% Similarity=0.174 Sum_probs=225.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
..+..++++.+--+-..-++ ..+..-+++++|+|.+.++++++...+...+..++..+++.|+ |.++.+..++++..+
T Consensus 12 ~li~gIvlia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~ 89 (395)
T COG2807 12 LLLAGIVLIAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAA 89 (395)
T ss_pred HHHHHHHHHHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHH
Confidence 33444444444445555444 4455567889999999999999999999999999999999996 999999999999888
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
|.++=... +...++.+-.+.|.|.+..+...++++.+.||++. +..+
T Consensus 90 G~~iR~~~--------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mt 136 (395)
T COG2807 90 GILIRSLG--------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMT 136 (395)
T ss_pred HHHHHhcc--------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHH
Confidence 87775552 34557888889999999999999999999999764 7788
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHS-GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI 275 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~-g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (547)
++|..+.++|+++++.+...+.++. |||....+=+...+++++.++....+.+....+.+.
T Consensus 137 glYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~------------------ 198 (395)
T COG2807 137 GLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKL------------------ 198 (395)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccccccccccc------------------
Confidence 9999999999999999999998887 699888776666666666655432111100000000
Q ss_pred CCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHH
Q 008953 276 CPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTI 355 (547)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (547)
.+...-|| ++..+...+.+-+....+|+.
T Consensus 199 -------------------------------------------~~~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~ 227 (395)
T COG2807 199 -------------------------------------------VSVRKVWR--------SPLAWQVTLFMGLQSLLYYIV 227 (395)
T ss_pred -------------------------------------------cccccccc--------CchhHHHHHHHHhhHHHHHHH
Confidence 00001122 111122233344777888899
Q ss_pred HhhhhhhhhhhhhhccccCCCcceeCcccccccch---hhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHH
Q 008953 356 LAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPY---IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLAT 432 (547)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~ 432 (547)
+.+++.++.+++..-+.+ +.+-.+.. +..-+..|.. .+|..+ .+........++.
T Consensus 228 ~~WLP~ili~~G~sa~~a---------G~llsl~~l~~~~~~ll~P~l-------a~R~~n------~r~~~~~~~~~~l 285 (395)
T COG2807 228 IGWLPAILIDRGLSAAEA---------GSLLSLMQLAQLPTALLIPLL-------ARRSKN------QRPLVVLALLLML 285 (395)
T ss_pred HHHHHHHHHHcCCCHHHh---------hhHHHHHHHHHHHHHHHHHHH-------HHHhcc------cchHHHHHHHHHH
Confidence 999998877663222211 11111111 1222223332 123221 1222333444444
Q ss_pred HHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHHHHH
Q 008953 433 FSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK-GMQAFLTAMTYCSYSFGFYLSS 511 (547)
Q Consensus 433 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~-~~rg~~~g~~~~~~~~G~~lg~ 511 (547)
++..-+.+... ...++| .+++|+|.+..+|....++....++ +.-+..+|+......+=..+||
T Consensus 286 ~G~~G~~~~P~-----------~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP 350 (395)
T COG2807 286 VGLVGLLLAPG-----------QLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGP 350 (395)
T ss_pred HHHHHHHHhhh-----------hHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhh
Confidence 44444433321 122333 4888999999999888876665544 4445566677777777778899
Q ss_pred HHHHHHHHhhcC
Q 008953 512 LLVSFVNKVTSS 523 (547)
Q Consensus 512 ~i~~~l~~~~~~ 523 (547)
.+.|++.+.+++
T Consensus 351 ~l~G~lhDa~gs 362 (395)
T COG2807 351 WLFGFLHDATGS 362 (395)
T ss_pred hhHhHHHHhcCC
Confidence 999999998887
No 105
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.60 E-value=4.5e-13 Score=143.94 Aligned_cols=401 Identities=13% Similarity=0.070 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHHHhhHH---HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 40 VFVLGLQAFEIMAIAAVGN---NLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.+++..+..++..+++.. .+-..+.++++.+..+++++.++......+..|+.+.+.||+ |.|.+++.+.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 5556666666666665543 344566788999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHH-HHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLA-LYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
|.++.+++++ .+.+++. -++.|+|.|+.......++...|+++ |+.+
T Consensus 124 g~~lssF~~~-------------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA 171 (509)
T KOG2504|consen 124 GLLLSSFATS-------------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALA 171 (509)
T ss_pred HHHHHHHHhh-------------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHH
Confidence 9999999854 4444444 45679999999888888888777754 7888
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhccc
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQI 275 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (547)
.++...+..+|..+=|.+..++.+.+|||..+++.+...+-.++.....++....+++... ++..+
T Consensus 172 ~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~-------------~~~~~- 237 (509)
T KOG2504|consen 172 TGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEE-------------KDLRN- 237 (509)
T ss_pred HhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhh-------------hhhcc-
Confidence 8888888889998888888999999999999998776665555555554442222211100 00000
Q ss_pred CCCCcccccccCCCCC-CCCCCccccccchhHhhhhhhccccCCCCCCCCCccc---cchhHHHHHHHHhHHHHHHHHHH
Q 008953 276 CPSNPQMLHGLNQNNV-PNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLC---TVTQVEQVKVLISVVPIFACTII 351 (547)
Q Consensus 276 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 351 (547)
+....+....+. .....+.......+....................+.. ..+..+++..+...+...+..+.
T Consensus 238 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g 313 (509)
T KOG2504|consen 238 ----SAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLG 313 (509)
T ss_pred ----ccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHH
Confidence 000000000000 0000000000000000000000000000000000000 11222222222222222233333
Q ss_pred HHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHH
Q 008953 352 FNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLA 431 (547)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~ 431 (547)
+...+...+...... ..+. ...+....+..+..+++.++.+.+.+ + ++ ++......++++..
T Consensus 314 ~~~p~~~l~~~~~~~--g~~~-------~~aa~l~Siigi~~i~gRi~~G~laD----~----~~-~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 314 FNVPFVYLPSYAKSL--GLSS-------NDAAFLLSIIGVSDIIGRIILGLLAD----K----PG-IRALVLFLLTLLIA 375 (509)
T ss_pred HHHHHHHHHHHHhhc--CCCh-------hhhHHHHHHHHHhhhhhhhhhhhhcC----c----cc-cchHHHHHHHHHHH
Confidence 333333333222111 1111 11122233334444444444444432 2 11 23456677788888
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 008953 432 TFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS 511 (547)
Q Consensus 432 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~ 511 (547)
+++.++.... .+++.++..-+++|++.+...........+..+.+.-..+.|+..+.++++..+|+
T Consensus 376 gl~~~~~p~~--------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gp 441 (509)
T KOG2504|consen 376 GLARLFLPFA--------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGP 441 (509)
T ss_pred HHHHHHHHHh--------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCc
Confidence 8887666664 46677788888999999988887778899999999999999999999999999999
Q ss_pred HHHHHHHHhhcC
Q 008953 512 LLVSFVNKVTSS 523 (547)
Q Consensus 512 ~i~~~l~~~~~~ 523 (547)
.+.+++.+.++.
T Consensus 442 Piag~~~d~tg~ 453 (509)
T KOG2504|consen 442 PIAGLLYDITGN 453 (509)
T ss_pred ccceeeeeccCC
Confidence 999988776653
No 106
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.60 E-value=7.9e-19 Score=187.48 Aligned_cols=136 Identities=17% Similarity=0.153 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhH
Q 008953 74 NSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKAS 153 (547)
Q Consensus 74 ~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (547)
+.++..+...++..++.+++|+++||+ |||+.++++.++..++.++..++.+. .+..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~----------------------~~~~ 103 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY----------------------NNFW 103 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc----------------------cccc
Confidence 467889999999999999999999997 99999999999999999999987410 1466
Q ss_pred HHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc---cchhhHHHHH
Q 008953 154 IFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH---SGMDVGFGVS 230 (547)
Q Consensus 154 ~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~---~g~~~~f~~~ 230 (547)
.++++|++.|++.|+..+..+.++.|..|++. |+...++......+|..++..+.-.+... .+||..+.+.
T Consensus 104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 177 (451)
T PF00083_consen 104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG 177 (451)
T ss_pred cccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999888 88888888888888888887765433332 3499888877
Q ss_pred HHHHHHHH
Q 008953 231 AAAMALGL 238 (547)
Q Consensus 231 ~~~~~~~l 238 (547)
.+..++.+
T Consensus 178 ~~~~l~~~ 185 (451)
T PF00083_consen 178 AIPSLLVL 185 (451)
T ss_pred cccccccc
Confidence 66554433
No 107
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.2e-14 Score=145.45 Aligned_cols=149 Identities=21% Similarity=0.116 Sum_probs=132.4
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccc
Q 008953 67 EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEE 146 (547)
Q Consensus 67 ~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (547)
+++-++.+.|++...+.+...+..++.|.+.||+ |+|-.+++|+++....+++.++..
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~--------------------- 157 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN--------------------- 157 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence 4567788999999999999999999999999996 999999999999999999999974
Q ss_pred cccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhH
Q 008953 147 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVG 226 (547)
Q Consensus 147 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~ 226 (547)
.+..++++|.++|+|.++......++++|.||++.. |++.+|+.-....+|-.+||.++|.+.+..|.+.+
T Consensus 158 ----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP 228 (464)
T KOG3764|consen 158 ----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP 228 (464)
T ss_pred ----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence 455699999999999999999999999999998751 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCc
Q 008953 227 FGVSAAAMALGLFGVVSGTL 246 (547)
Q Consensus 227 f~~~~~~~~~~l~~~~~~~~ 246 (547)
|++.++.+++-..+-++..+
T Consensus 229 FlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 229 FLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHHHHHHHHHHHheeC
Confidence 99988877776555444333
No 108
>PRK11462 putative transporter; Provisional
Probab=99.59 E-value=2.3e-12 Score=138.10 Aligned_cols=175 Identities=12% Similarity=0.011 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHHHHH-HHHHHHH
Q 008953 40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFWTML-IFGFVEL 115 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~-~~~~~~~ 115 (547)
+.=-+..+..+..+..+..++..|.++.+|+++..+|.+..+.-+.-++.-|+.|+++||. +||||..+ ++.+...
T Consensus 12 ~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~ 91 (460)
T PRK11462 12 IGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFG 91 (460)
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHH
Confidence 3444566677777778888999999999999999999999999999999999999999973 48876555 5666777
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.+++....+. ........+++...+..++..+......++.+|+.++.+ + |.+.
T Consensus 92 i~~~llf~~p~~-------------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~l 147 (460)
T PRK11462 92 IVCVLAYSTPDL-------------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RISL 147 (460)
T ss_pred HHHHHHHhCCCC-------------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHHH
Confidence 776666543110 011223345555555677777777788889999887532 2 8889
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhccc-------chhhHHHHHHHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHS-------GMDVGFGVSAAAMALGL 238 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~-------g~~~~f~~~~~~~~~~l 238 (547)
.++.....++|..+++.+...+.... ||+....+.+++.+++.
T Consensus 148 ~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 148 QSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 99988888888888777755443322 45655544444443333
No 109
>PTZ00207 hypothetical protein; Provisional
Probab=99.57 E-value=1e-11 Score=134.91 Aligned_cols=178 Identities=12% Similarity=0.028 Sum_probs=127.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953 34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 113 (547)
++|..++..+++..+... .|+.. .....+++++|++..+.+++.+.... ..++.+++|+++||+ |+|+++.++.++
T Consensus 25 ~Rw~~lva~~~~~~~~g~-~y~fs-v~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ll 100 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSF-MYAFN-LISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMTV 100 (591)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 334455544554444433 34443 44456788999999999998877543 345677899999997 999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
..++.++++++.+- . -..+.+.+++.|++.|+|.+...+.....+.++|| ++ |+
T Consensus 101 ~~iG~ll~ala~~~-~------------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG 154 (591)
T PTZ00207 101 FCLGTLLFALTFQE-V------------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RG 154 (591)
T ss_pred HHHHHHHHHHHhcc-c------------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hH
Confidence 99999999986320 0 01357788999999999999888888888899997 44 89
Q ss_pred cchhhhhhHHhHhHHH-HHHHHHHhhcccchhhHHHHHHHHHHH-HHHHHHH
Q 008953 194 SYFNAAYFAFSTGELV-ALTVLVWVQTHSGMDVGFGVSAAAMAL-GLFGVVS 243 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~-~~~i~~~l~~~~g~~~~f~~~~~~~~~-~l~~~~~ 243 (547)
++.++.....++|+++ +++..+++.+ +|+..|++.++..++ +++.+.+
T Consensus 155 ~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll~~~~ 204 (591)
T PTZ00207 155 AVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGILAIVF 204 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999975 5555555543 577666665544333 3333333
No 110
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.2e-14 Score=147.01 Aligned_cols=177 Identities=16% Similarity=0.112 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhccc-chHHHHHH-HHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFL-GSFWTMLI-FGFVE 114 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-Gr~~~~~~-~~~~~ 114 (547)
|.+|.+++..++.....|++..|.|.|++|+.|+|..++++..+.|-.+...+.+++||+|||++ |||..+-+ ..++.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999999999999999999998 77765543 33344
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++.+....+.+ .+..+..++.++.|+...+..-.+.....|..|++- -|+
T Consensus 332 ~~~~~~~w~~~~-----------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGt 382 (448)
T COG2271 332 TASLVLYWLAPN-----------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGT 382 (448)
T ss_pred HHHHHHHHcCCC-----------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccc
Confidence 444444444322 345566666677777666655555666788888776 678
Q ss_pred chhhhhhHHhH-hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953 195 YFNAAYFAFST-GELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 195 ~~~~~~~~~~i-g~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~ 242 (547)
+.|.......+ |+..+....|++.+.+||...|.+..+..+++.+++.
T Consensus 383 A~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 383 ATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred hhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence 88887777777 9999999999999999999999876665555544433
No 111
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.55 E-value=1.1e-12 Score=129.82 Aligned_cols=157 Identities=11% Similarity=-0.028 Sum_probs=119.2
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q 008953 46 QAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQA 125 (547)
Q Consensus 46 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~ 125 (547)
........-.....+.+-+....|.+..+..+++.....+..+++-.+|.++|++ |||+.+....+...+...+-..+
T Consensus 86 gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s- 163 (528)
T KOG0253|consen 86 GWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS- 163 (528)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC-
Confidence 3344444444445555666677888889999999999999999999999999996 99998888777766655555554
Q ss_pred ccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhH
Q 008953 126 HLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFST 205 (547)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 205 (547)
+|+..+++.|.+.++|.|+ .|...++..|..|..+ |....-.. .-..+
T Consensus 164 ------------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~wai 211 (528)
T KOG0253|consen 164 ------------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAI 211 (528)
T ss_pred ------------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHH
Confidence 5667799999999999999 8898999999999877 66655444 55677
Q ss_pred hHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 008953 206 GELVALTVLVWVQTHSGMDVGFGVSAAAMAL 236 (547)
Q Consensus 206 g~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~ 236 (547)
|.++...+.=.+..+.||||-.+.......+
T Consensus 212 g~v~ea~law~vm~~~gwr~~l~~~~~pl~~ 242 (528)
T KOG0253|consen 212 GQVFEALLAWGVMSNFGWRYLLFTSSTPLMF 242 (528)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH
Confidence 8888877765566778999877665543333
No 112
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1e-13 Score=141.06 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=104.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccc
Q 008953 70 FSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKG 149 (547)
Q Consensus 70 ~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (547)
+++...+.+..+..++..+++++.||++||+ |||+++...+++..++++.++++...+ ...
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~~------------------~~~ 141 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGTT------------------SPL 141 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCCC------------------CCc
Confidence 5666788899999999999999999999996 999999999999999998776653211 112
Q ss_pred chhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhh----HHhHhHHHHHHHHHHhhc------
Q 008953 150 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF----AFSTGELVALTVLVWVQT------ 219 (547)
Q Consensus 150 ~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~ig~~~~~~i~~~l~~------ 219 (547)
..+..++..|+++|+|.|+-+|...++..|..-++. |+...+.... +.-.|++++-++.+.+..
T Consensus 142 ~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~ 215 (538)
T KOG0252|consen 142 GVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPS 215 (538)
T ss_pred chhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCC
Confidence 456778999999999999999999998888777665 6666665444 344455555444443321
Q ss_pred ---c--cchhhHHHHHHHHHHHHH
Q 008953 220 ---H--SGMDVGFGVSAAAMALGL 238 (547)
Q Consensus 220 ---~--~g~~~~f~~~~~~~~~~l 238 (547)
+ .-||..|.+.++..++.+
T Consensus 216 ~~~~ld~vWRl~~glg~vpa~~~l 239 (538)
T KOG0252|consen 216 TYPHLDGVWRIIFGLGAVPALLVL 239 (538)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 1 128887777655544333
No 113
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.50 E-value=5e-13 Score=144.57 Aligned_cols=180 Identities=15% Similarity=0.155 Sum_probs=129.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
+++.........++..+.+|++..++|.|+++++|++..+..++.....++..++.+++|+++||+ |||+.+.++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 344444444455667788999999999999988999998888888888888999999999999997 9999988877654
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++...+..... ..+...+++++++.+++.+...+...++..|.+|++. |++
T Consensus 327 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~ 378 (490)
T PRK10642 327 FVLAIPAFILIN----------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYS 378 (490)
T ss_pred HHHHHHHHHHHh----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chH
Confidence 443333222111 0234456677777777766666677788889999988 999
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHH
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+++..+....+++.++|.+.+++.+..+ |+.++++..+..+++++..++
T Consensus 379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 9998666566777889999999887654 666665544444444444443
No 114
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.50 E-value=7e-12 Score=133.67 Aligned_cols=148 Identities=13% Similarity=0.024 Sum_probs=123.7
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCc
Q 008953 64 VINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSEN 143 (547)
Q Consensus 64 l~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (547)
+.+++|....+.+.+.+++.++++++.+++|.+.||+ .-.+.+....+...+..++....
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~------------------- 131 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV------------------- 131 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 4477889999999999999999999999999999997 97777776666666555555444
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHh------
Q 008953 144 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV------ 217 (547)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l------ 217 (547)
.+.+.+++.|++.|+..+...|....+++.++.+++ |+..+++++...++|.++|..+...+
T Consensus 132 ------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~ 199 (495)
T KOG2533|consen 132 ------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGS 199 (495)
T ss_pred ------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC
Confidence 346679999999999999999999999999999988 99999999999999999999998775
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 218 QTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 218 ~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
....||||.|++.+++.+..-+..++
T Consensus 200 ~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 200 GGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred CCcCCceeehhHHHHHHHHHHheEEE
Confidence 34568999999988766655444444
No 115
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.50 E-value=3.4e-11 Score=125.90 Aligned_cols=368 Identities=12% Similarity=0.035 Sum_probs=229.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHH-HHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFW-TMLIFG 111 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~-~~~~~~ 111 (547)
.|.-+.--...+..+..+..+..++..|.++..|+++..+|.+..+.-+.-++.-|+.|.+.||. +||+| -++++.
T Consensus 11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ 90 (467)
T COG2211 11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA 90 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence 34445556677788888888999999999999999999999999999999999999999999984 37655 555667
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953 112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK 191 (547)
Q Consensus 112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 191 (547)
+.+++.+.++..+.+.. .+.+....++...+.+++.....-...++.+++.++. +|
T Consensus 91 ip~~i~~~l~F~~p~~~-------------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~--~E--- 146 (467)
T COG2211 91 IPFAIVAVLLFITPDFS-------------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDP--QE--- 146 (467)
T ss_pred HHHHHHHHHHHcCCCcc-------------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCH--HH---
Confidence 88888888887764311 1234455667777888998888888889999988753 23
Q ss_pred cccchhhhhhHHhHhHHHHHHHHHHhhcc-------cchhhHHHHHHHHHHHHHHHHHHcCceeec-cCCCCC-CchhHH
Q 008953 192 LSSYFNAAYFAFSTGELVALTVLVWVQTH-------SGMDVGFGVSAAAMALGLFGVVSGTLYYRN-KRPQGS-IFTPIA 262 (547)
Q Consensus 192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~-------~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~~~~~~ 262 (547)
|.+..++-....++|..+...+.+.+... .||+..-.+.++...+.++..+...++... ..+..+ ...
T Consensus 147 R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~--- 223 (467)
T COG2211 147 RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKL--- 223 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccc---
Confidence 88899998888888877766665555432 345544444444444444333332222111 100000 000
Q ss_pred HHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhH
Q 008953 263 QVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISV 342 (547)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (547)
.+.+.... ..+++. +
T Consensus 224 ------------------------------------------~~~~~~~~-------------------~~~Nrp--~-- 238 (467)
T COG2211 224 ------------------------------------------KLKDSFLL-------------------IFKNRP--L-- 238 (467)
T ss_pred ------------------------------------------cHHHHHHH-------------------HHccch--H--
Confidence 00000000 001111 1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhH
Q 008953 343 VPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQ 422 (547)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~ 422 (547)
..+....++++...+...+...+.. +..++ .-...+...........++..+++.++ .+|+ .+++
T Consensus 239 ~~~l~~~l~~~~~~~i~~s~~~yy~---~y~lg-~~~l~~~~~~~~~~~~~l~~~~~~p~L----~~~~-------gkk~ 303 (467)
T COG2211 239 LLLLLMNLLLFIAFNIRGSIMVYYV---TYVLG-DPELFAYLLLLASGAGLLIGLILWPRL----VKKF-------GKKK 303 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeE---EEEcC-ChHHHHHHHHHHHHHHHHHHHHhHHHH----HHHh-------chHH
Confidence 1122234444444444444332211 11111 001111111122222223323343333 3443 3446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc-------hhhHHHH
Q 008953 423 RIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSL-------KGMQAFL 495 (547)
Q Consensus 423 ~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~rg~~ 495 (547)
.+.+|.++..++.+.+-+.. ..+..++++..++.++|.+...+..++.+.|... .+..|..
T Consensus 304 ~~~~~~~~~~i~~~~~~f~~------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~ 371 (467)
T COG2211 304 LFLIGLLLLAVGYLLLYFTP------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIV 371 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhc------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhH
Confidence 68888899988888887763 2356666777789999999999888888777554 4456888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008953 496 TAMTYCSYSFGFYLSSLLVSFVNKVTS 522 (547)
Q Consensus 496 ~g~~~~~~~~G~~lg~~i~~~l~~~~~ 522 (547)
-|.+++.+-+|..++..+.++.....+
T Consensus 372 ~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 372 YSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999888654
No 116
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.49 E-value=4.1e-13 Score=144.30 Aligned_cols=177 Identities=15% Similarity=0.039 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.+|.+.+..++....+++...|+|.|+++++|++..++++....+.++..++.+++|+++||+ |||+.+........+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 5688888888888888888899999999999999999999999999999999999999999997 999887665444443
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+..++..... .+.....+.+++.|+..............|.+|++. |+++.
T Consensus 337 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~ 387 (467)
T PRK09556 337 IFTLGVYQHA-----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVAN 387 (467)
T ss_pred HHHHHHHHhc-----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHH
Confidence 3322222111 223344455666665433322223356679999887 99999
Q ss_pred hhhhhHHhH-hHHHHHHHHHHhhc------------ccchhhHHHHHHHHHHHHHHHHHH
Q 008953 197 NAAYFAFST-GELVALTVLVWVQT------------HSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 197 ~~~~~~~~i-g~~~~~~i~~~l~~------------~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
++.+...++ |.+++|.+.|++.+ ..||+..|++..+..+++++..+.
T Consensus 388 gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 388 GIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 999998886 77999999999998 578999998877766666555443
No 117
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.48 E-value=1.7e-12 Score=136.28 Aligned_cols=176 Identities=14% Similarity=0.102 Sum_probs=128.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
++|..+..+.+.+.....++....+.|.|+++++|+++.+++.+.+...+...++.+++|+++||+ |||+.+..+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 334444444444444455555667899999999999999999988887788888999999999996 9999887765554
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.+....+... .+...+++.+++.+++.+...+...+...|.+|+ + |++
T Consensus 293 ~~~~~~~~~~-------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~ 340 (393)
T PRK15011 293 VCFYAGMLMA-------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGS 340 (393)
T ss_pred HHHHHHHHHH-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cch
Confidence 4443333322 2334455566666666665555556667788774 3 688
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+.++++...++|..++|.++|++.++.||+..|++..+..+++++..+.
T Consensus 341 ~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 341 ATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 8999888889999999999999999899999998877777666665554
No 118
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.46 E-value=8.4e-13 Score=137.29 Aligned_cols=172 Identities=18% Similarity=0.071 Sum_probs=131.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953 34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 113 (547)
++++.++......++.....+....++|.|+++++|.+..+.+.+.....++..++.+++|+++||+ |||+.+..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~ 294 (394)
T TIGR00883 216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVL 294 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHH
Confidence 3344567777777788888888889999999989999999999999999999999999999999997 999987765544
Q ss_pred HHHHH-HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953 114 ELSGF-ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL 192 (547)
Q Consensus 114 ~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 192 (547)
..+.. .+...... ..+...+++..++.+++.+...+...+.+.|.+|+++ |
T Consensus 295 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~ 346 (394)
T TIGR00883 295 AALLAVPLLMALLD----------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------R 346 (394)
T ss_pred HHHHHHHHHHHHhc----------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------e
Confidence 43332 22211110 0233445566677788888888888999999999887 8
Q ss_pred ccchhhh-hhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHH
Q 008953 193 SSYFNAA-YFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAM 234 (547)
Q Consensus 193 ~~~~~~~-~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~ 234 (547)
++++++. .....+|..++|.++|++.++.| |++.++..++..
T Consensus 347 ~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 347 YTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred eeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 8888874 45567899999999999999888 887776654443
No 119
>PRK09952 shikimate transporter; Provisional
Probab=99.44 E-value=2.5e-12 Score=137.07 Aligned_cols=183 Identities=14% Similarity=0.015 Sum_probs=129.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953 34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 113 (547)
++++....+....++..+.+|....+.+.|+++++|++......+.........++.++.|+++||+ ||||++..+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~ 325 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI 325 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 3444444444456677788898999999999999999887666555566667788889999999996 999998887665
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
..++.+.+..... .......+++..++.+++.+...+..+++.+|.+|.+. |+
T Consensus 326 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~ 378 (438)
T PRK09952 326 GTLSAFPFFMALE---------------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RY 378 (438)
T ss_pred HHHHHHHHHHHHH---------------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hH
Confidence 5444433322210 00122333444555677777777788899999999887 88
Q ss_pred cchhhhhhH-HhHhHHHHHHHHHHhhccc--chhhHHHHHHHHHHHHHHHHHHc
Q 008953 194 SYFNAAYFA-FSTGELVALTVLVWVQTHS--GMDVGFGVSAAAMALGLFGVVSG 244 (547)
Q Consensus 194 ~~~~~~~~~-~~ig~~~~~~i~~~l~~~~--g~~~~f~~~~~~~~~~l~~~~~~ 244 (547)
++.++.+.. ..+|+.++|.+.+++.+.. +|+.++.+.++..+++++..+..
T Consensus 379 tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 379 SGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 888885544 4589999999999997744 37877777666666666665543
No 120
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.43 E-value=2.3e-12 Score=133.18 Aligned_cols=170 Identities=15% Similarity=0.013 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.++.+....++..+.......+.+.|. +++|.++.+.+.+.+.+.++..++.++.|+++||+ |||+.+.++.++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 282 (377)
T TIGR00890 205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAV 282 (377)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHH
Confidence 3445555555555555555556677775 56899999999999999999999999999999996 999999988888888
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+.+++....+ .....++...++.+++.+...+..+++..|.+|+++ |++.+
T Consensus 283 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~ 333 (377)
T TIGR00890 283 GMAAMLFIPM-----------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANY 333 (377)
T ss_pred HHHHHHHccc-----------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHh
Confidence 7776665421 112234445566777777777777888999999887 89999
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG 237 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~ 237 (547)
++++...++|..++|.+.|++.++.||++.|.+.++..+++
T Consensus 334 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 334 GFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999998876665554
No 121
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.40 E-value=1.5e-09 Score=116.10 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=60.9
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008953 457 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSS 523 (547)
Q Consensus 457 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~~~ 523 (547)
+.+.+.+..++.|+..+..++..-++..|..|+++++...|++.+.......+||++.+.+.+.|++
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~ 445 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS 445 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455666678999999999999999999999999999999999999999999999999999998864
No 122
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.39 E-value=8.6e-12 Score=131.00 Aligned_cols=172 Identities=17% Similarity=0.080 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953 40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI 119 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 119 (547)
+.......+..+.++.+..+++.|+.+ .|.+ +.+.....+.++..++.++.|++.||+ ||||.+..+..+..++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~ 294 (399)
T PRK05122 219 WPYGMGLALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLL 294 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence 333333344455666677888888764 5653 456666777888889999999999996 999999888877777776
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953 120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA 199 (547)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 199 (547)
++... .+...+++.+++.|++.+...+.......|.+|+++ |++.++++
T Consensus 295 ~~~~~-------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~ 343 (399)
T PRK05122 295 LLWLA-------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAY 343 (399)
T ss_pred HHHHh-------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHH
Confidence 66654 233446667788899888888877777888888777 89999999
Q ss_pred hhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCc
Q 008953 200 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTL 246 (547)
Q Consensus 200 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~ 246 (547)
+...++|..+++.+.|++.++.||++.|++.++..+++++..+..++
T Consensus 344 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 344 SVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999899999999887777776665555433
No 123
>PRK03699 putative transporter; Provisional
Probab=99.38 E-value=9.8e-12 Score=130.57 Aligned_cols=169 Identities=15% Similarity=0.166 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.++.+.+..++.....+.+..|+|.|+++++|++..+++.+.+.+.++..++.+++|+++||+ |||+.+.....+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence 4556666666777777888889999999999999999999999999999999999999999996 999988877666555
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
...+..... +...+.+..++.|++.+...+...+...+..|++ +++..
T Consensus 284 ~~~~~~~~~-------------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 331 (394)
T PRK03699 284 LMYLFVNTD-------------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLV 331 (394)
T ss_pred HHHHHHHcC-------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHH
Confidence 544443321 2223444556677777777777777777766543 34556
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGL 238 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l 238 (547)
+......++|..++|.+.|++.+..|++..++..++..++++
T Consensus 332 g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (394)
T PRK03699 332 NFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF 373 (394)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH
Confidence 777778899999999999999999999998887665555443
No 124
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.37 E-value=1.3e-11 Score=128.05 Aligned_cols=177 Identities=16% Similarity=0.016 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHH-HHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTML-IFGFVEL 115 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~~ 115 (547)
+.++..++..++.....+....+.|.|+.+++|.+..+.+++.....++..++.+++|+++||+ |||+... .......
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 5577777888888888888889999999999999999999999999999999999999999996 9986111 1111111
Q ss_pred HH---HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953 116 SG---FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL 192 (547)
Q Consensus 116 i~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 192 (547)
++ ..+...... . ............+.+.+.+ ..+...++..|.+|+++ |
T Consensus 294 ~~~~~~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~ 345 (399)
T TIGR00893 294 IAGLVLSLLMFATN--Y-------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------A 345 (399)
T ss_pred HHHHHHHHHHHHhc--c-------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------H
Confidence 11 111111110 0 0122222222223333333 67888899999999888 9
Q ss_pred ccchhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHH
Q 008953 193 SSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~ 242 (547)
++.+++.+...++|..++|.+.|++.+..| |+..|++.++..+++.+..+
T Consensus 346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 99998887766666555443
No 125
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.37 E-value=1.5e-11 Score=127.52 Aligned_cols=168 Identities=14% Similarity=0.058 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 008953 43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLS 122 (547)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~ 122 (547)
....++..........++|.|+.+++|.++.+.+.+.....+...++.+++|+++||+ |||+.+.++.+...+......
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~ 283 (375)
T TIGR00899 205 FVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLA 283 (375)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHH
Confidence 3333333344444556788999899999999999888877777788889999999997 999998887665554444333
Q ss_pred HhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhH
Q 008953 123 VQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA 202 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 202 (547)
.. ++...+.+.+++.+++.+...+...++..|..|++ +++++++++..
T Consensus 284 ~~-------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 331 (375)
T TIGR00899 284 AD-------------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNT 331 (375)
T ss_pred HH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHH
Confidence 32 23444556677778877777777777788887753 56889999999
Q ss_pred HhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 203 FSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 203 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
.++|..++|.+.|++.+..||+..|++.++..+++.+....
T Consensus 332 ~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 332 GRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999999877776666655443
No 126
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.36 E-value=9e-10 Score=112.38 Aligned_cols=345 Identities=14% Similarity=0.097 Sum_probs=199.1
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccc-----hHHHHH-HHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953 64 VINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLG-----SFWTML-IFGFVELSGFILLSVQAHLPQLKPPKCNM 137 (547)
Q Consensus 64 l~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G-----r~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 137 (547)
+..|++++..-.+.......+.+ ..++..|..||+. + ||..++ .+.++...+..+.+++.-+-.
T Consensus 6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~-------- 75 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA-------- 75 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 34578888877777777777665 4699999999997 7 555555 456666666666666532111
Q ss_pred CCCCCcccc-cccchhH--HHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH
Q 008953 138 VTDSENCEE-AKGFKAS--IFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL 214 (547)
Q Consensus 138 ~~~~~~~~~-~~~~~~~--~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~ 214 (547)
+ +... ......+ ...++..+.|+|.+.......++++|..||++ |++..++.+.+.-+|.+++..+.
T Consensus 76 ---~-~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 76 ---E-SGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred ---c-cccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0111222 34444556788888888888899999999998 99999999999999999999999
Q ss_pred HHhhcccc-hhhH---HHHHHHHHHHHHHHHHHcCceeeccC-CCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCC
Q 008953 215 VWVQTHSG-MDVG---FGVSAAAMALGLFGVVSGTLYYRNKR-PQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQN 289 (547)
Q Consensus 215 ~~l~~~~g-~~~~---f~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (547)
+.+.+.+. -|.. -..+.+..++.++..+-..++.++.. ..+++
T Consensus 146 g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~-------------------------------- 193 (403)
T PF03209_consen 146 GRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERP-------------------------------- 193 (403)
T ss_pred HHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC--------------------------------
Confidence 98877665 2221 12223333334444443322222111 00000
Q ss_pred CCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 008953 290 NVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSA 369 (547)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (547)
+.++.+... ....+. +.++++. .+++..+.+++....+ ..|--+
T Consensus 194 -------------~~~f~~a~~---------------~~~~~~--~a~~f~~--fl~l~t~a~~~QD~iL-EPygg~--- 237 (403)
T PF03209_consen 194 -------------RPPFREAWR---------------QVWASP--QARRFFV--FLFLGTLAFFMQDVIL-EPYGGE--- 237 (403)
T ss_pred -------------CccHHHHHH---------------HHHhCC--ChhHHHH--HHHHHHHHHHhhHHHc-CCchhH---
Confidence 011111111 000000 0111111 1112222222211111 111111
Q ss_pred ccccCCCcceeC-cccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008953 370 MNNKLTKNFHVP-PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDS 448 (547)
Q Consensus 370 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~ 448 (547)
.. ++... +..++..-..+.+++..+...... +| ..+++...+|..+.++++........
T Consensus 238 ----Vf-gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~----- 297 (403)
T PF03209_consen 238 ----VF-GMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGP----- 297 (403)
T ss_pred ----Hc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 11 11111 111222233344444444444322 12 23444555666666666665554422
Q ss_pred cCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008953 449 ALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTS 522 (547)
Q Consensus 449 ~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~~ 522 (547)
.-+.+.+.+..+++|++.++......+...+..+++..|..+|.+...+.++..++.++.+.+.+...
T Consensus 298 ------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 298 ------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred ------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23577788899999999999999999999999999999999999999999999999999998888654
No 127
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.36 E-value=1.1e-11 Score=130.60 Aligned_cols=171 Identities=13% Similarity=0.023 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 118 (547)
.+.+....++.....+.+..++|.|+.+ .|++..+.+.+...+.++..++.++.|+++||+ |||+.+.++.+...++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 299 (406)
T PRK11551 222 TLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASL 299 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 3344444555556677778889999875 799999999999999999999999999999996 99999888666555555
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA 198 (547)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 198 (547)
+++... .+...+.+..++.+++.++..+...++..|.+|+++ |++..++
T Consensus 300 ~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 348 (406)
T PRK11551 300 AALAAA-------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGA 348 (406)
T ss_pred HHHHhc-------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhH
Confidence 444433 122334455566777776777788889999999888 9999999
Q ss_pred hhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHH
Q 008953 199 AYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 199 ~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~ 242 (547)
.+....+|..++|.+.|++.++.+ |...+++.....+++.+..+
T Consensus 349 ~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 349 AVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988754 55555555444444444433
No 128
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.35 E-value=2.4e-11 Score=124.04 Aligned_cols=174 Identities=18% Similarity=0.165 Sum_probs=149.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHH-HHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFW-TMLIFGFVEL 115 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~-~~~~~~~~~~ 115 (547)
|.++...+..++..........+.+.|..+.+|.++.+.+.......++..++.++.|+++||+ |||+ .+..+.++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 253 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 4445556666677777778888899999888899999999999999999999999999999996 9999 9999988888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.+.+... .+...+.+..++.+++.+...+...+++.|..|+++ |++.
T Consensus 254 i~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~ 302 (352)
T cd06174 254 LGLLLLALA-------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTA 302 (352)
T ss_pred HHHHHHHHh-------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHH
Confidence 888877764 235567778888999999999999999999999877 9999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~ 242 (547)
++..+...++|..++|.+.+++.+..+|+..|++.++..+++.+...
T Consensus 303 ~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 303 SGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999888999999988777666655443
No 129
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.35 E-value=6e-12 Score=134.74 Aligned_cols=178 Identities=15% Similarity=0.063 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhccc-chHHHHH-HHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFL-GSFWTML-IFGFVE 114 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-Gr~~~~~-~~~~~~ 114 (547)
+.+|...+..++.....+++..++|.|+++++|++..+++.+...+.++..++.+++|+++||+. |||+... ....+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 55777778777878888888999999999999999999999988888999999999999999951 3343322 222222
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++.+++..... .+.....+..++.|.+..........+..|.+|++. |++
T Consensus 333 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~ 383 (452)
T PRK11273 333 TIATIVYWLNPA-----------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 383 (452)
T ss_pred HHHHHHHHHhcc-----------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhh
Confidence 333222222110 122223333333443322222223345678999887 999
Q ss_pred chhhhhhHHhHhHHH-HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 195 YFNAAYFAFSTGELV-ALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~-~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
++++.+...++|+.+ +|.+.|++.++.||+..|++.++..+++++....
T Consensus 384 ~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 384 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 999998888888654 7999999999999999998877766666554443
No 130
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.35 E-value=3.8e-11 Score=126.15 Aligned_cols=176 Identities=12% Similarity=-0.074 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+..|.+.+..++..+.++.+..++|.|+.+ +|++..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV 282 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence 445666666677778888999999999976 899999999999999999999999999999996 999999888777666
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC-CCcccccccccc
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ-SNPKQSKKLSSY 195 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~ 195 (547)
+..++..... ... .+ ..++.+++.+...+.......+.+++ ++ +++.
T Consensus 283 ~~~~~~~~~~-----------------------~~~-~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~ 330 (393)
T PRK09705 283 GFCGFIWLPL-----------------------QLP-VL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKL 330 (393)
T ss_pred HHHHHHHccc-----------------------hHH-HH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHH
Confidence 6554443210 111 11 12345777777777776677777753 34 7889
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHcCc
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVSGTL 246 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~~~~ 246 (547)
++..+...+++..++|.+.|++.+..| |...|++.++..+++++......+
T Consensus 331 ~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 331 VAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999887 788888776666655555444443
No 131
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.35 E-value=7.8e-12 Score=132.46 Aligned_cols=177 Identities=8% Similarity=-0.048 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCC--------hhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFS--------LSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF 110 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~--------~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~ 110 (547)
++...+..++..........+.+.|+.+ .|.+ ..+.+.+.+...+...++.++.|+++||+ |||+++.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~ 287 (418)
T TIGR00889 210 MAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLS 287 (418)
T ss_pred eeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHH
Confidence 3444444555444444455677888754 5544 35668888888999999999999999996 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953 111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK 190 (547)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (547)
.++..++..++..... +......+++..++.|++.+...+....++.|.+|+++
T Consensus 288 ~~~~~v~~~l~~~~~~---------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~----- 341 (418)
T TIGR00889 288 LVAWALRFGFFAYGDP---------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI----- 341 (418)
T ss_pred HHHHHHHHHHHHHcCc---------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence 8888777666655311 00123456677888899888888888899999999887
Q ss_pred ccccchhhhh-hHHhHhHHHHHHHHHHhhcc------cchhhHHHHHHHHHHHHHHHHHHc
Q 008953 191 KLSSYFNAAY-FAFSTGELVALTVLVWVQTH------SGMDVGFGVSAAAMALGLFGVVSG 244 (547)
Q Consensus 191 ~r~~~~~~~~-~~~~ig~~~~~~i~~~l~~~------~g~~~~f~~~~~~~~~~l~~~~~~ 244 (547)
|++++++.+ ....+|.++||.++|++.++ .||+..|.+.++..+++.+.++..
T Consensus 342 -~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~ 401 (418)
T TIGR00889 342 -RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF 401 (418)
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 56789999999999999887 469999988766655554444443
No 132
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.34 E-value=2.7e-11 Score=128.97 Aligned_cols=178 Identities=15% Similarity=0.000 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccch-HHHH-HHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGS-FWTM-LIFGFVE 114 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr-~~~~-~~~~~~~ 114 (547)
+.+|.+.+..++....++.+..|+|.|+.+++|++..+++...+.+.++..++.+++|+++||+.++ |+.. ....+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 4567777767777777788889999999888999999999999999999999999999999996222 2222 2221111
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.+....+... +. .+.....+..+..|++.............|.+|+++ |++
T Consensus 323 ~~~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 373 (434)
T PRK11663 323 LLSVGSLWLM---PF--------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGA 373 (434)
T ss_pred HHHHHHHHHc---cc--------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHh
Confidence 1111111111 10 112222222333333222212223455678888777 999
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+.++.+...++|.+++|.+.|++.++.||+..|++.+++.+++.+..+.
T Consensus 374 ~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 374 ATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877766665544443
No 133
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.33 E-value=6.2e-12 Score=133.20 Aligned_cols=163 Identities=9% Similarity=-0.016 Sum_probs=124.4
Q ss_pred HHHHHHHHhhHHHHHHHhhhhc---CCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 008953 47 AFEIMAIAAVGNNLITYVINEM---HFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSV 123 (547)
Q Consensus 47 ~~~~~~~~~~~~~l~~yl~~~l---g~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~ 123 (547)
++....+.....+.+.|+.+.+ +.+..+.+.+.+...+...++.+++|+++||+ |||+.+.++.++..++.+++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~ 311 (420)
T PRK09528 233 IGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGF 311 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHh
Confidence 3333444444456777776543 56667788988988888999999999999997 9999999988888887777766
Q ss_pred hhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh-hhhH
Q 008953 124 QAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA-AYFA 202 (547)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~ 202 (547)
+ .+...+.+.+++.+++.+...+....++.|.+|++. |++.++. +++.
T Consensus 312 ~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~ 360 (420)
T PRK09528 312 A-------------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFA 360 (420)
T ss_pred c-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHH
Confidence 4 234556677888888877766667788888888776 7777665 6677
Q ss_pred HhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008953 203 FSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGV 241 (547)
Q Consensus 203 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~ 241 (547)
.++|.+++|.+.|++.+..||+..|.+.++..++..+..
T Consensus 361 ~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 399 (420)
T PRK09528 361 KQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLIS 399 (420)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999998666555444333
No 134
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.31 E-value=5.4e-11 Score=128.65 Aligned_cols=148 Identities=12% Similarity=0.074 Sum_probs=113.7
Q ss_pred hhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008953 55 AVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPK 134 (547)
Q Consensus 55 ~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 134 (547)
.+..++|.|+++++|++..+++++.+...++..++.+++|+++||+ |||+.+.++.++..++.++.....+
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 4567899999889999999999999999999999999999999996 9999988876665555444333211
Q ss_pred CCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH
Q 008953 135 CNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL 214 (547)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~ 214 (547)
.+...+.+..++.+....+..+..++++.|.+|+++ |++.+++++...++|..++|.+.
T Consensus 364 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~ 422 (496)
T PRK03893 364 ---------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILG 422 (496)
T ss_pred ---------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHH
Confidence 222233333333333333345667788899999877 99999999999999999999999
Q ss_pred HHhhcccchhhHHHHHHH
Q 008953 215 VWVQTHSGMDVGFGVSAA 232 (547)
Q Consensus 215 ~~l~~~~g~~~~f~~~~~ 232 (547)
|++.+++||+..+.+.+.
T Consensus 423 g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 423 ALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHhccCChHHHHHHHHH
Confidence 999999999887765443
No 135
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.31 E-value=3.1e-11 Score=134.86 Aligned_cols=134 Identities=11% Similarity=-0.002 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHH
Q 008953 77 NIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFF 156 (547)
Q Consensus 77 ~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (547)
....+..++..++.+++|+++||+ |||+++.++.++.+++.++++++.+ ...++
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~s-------------------------~~~ll 652 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGNS-------------------------ESAMI 652 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHcc-------------------------HHHHH
Confidence 334555678889999999999996 9999999998888888877776532 23355
Q ss_pred HHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 008953 157 LALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMAL 236 (547)
Q Consensus 157 ~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~ 236 (547)
+.+++.+++.++..+...++++|.+|++. |++++++.+....+|++++|.+++++... +...+|++.+++.++
T Consensus 653 ~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll 725 (742)
T TIGR01299 653 ALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALAC 725 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 55667777777777888899999999887 99999999999999999999999988764 455677777666666
Q ss_pred HHHHHHH
Q 008953 237 GLFGVVS 243 (547)
Q Consensus 237 ~l~~~~~ 243 (547)
+.++.+.
T Consensus 726 ~~ll~~~ 732 (742)
T TIGR01299 726 GGLLALK 732 (742)
T ss_pred HHHHHHh
Confidence 5554443
No 136
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.31 E-value=2.5e-11 Score=127.06 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 118 (547)
+..+.....+.+...+....++|.|+.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+.++.+...+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 318 (405)
T TIGR00891 240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLI 318 (405)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHH
Confidence 34444445555666667778899999999999999999999999999999999999999996 99999888766543322
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA 198 (547)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 198 (547)
...... . .+...+.+..++.++..+...+..++++.|.+|+++ |++.+++
T Consensus 319 ~~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~ 368 (405)
T TIGR00891 319 IPVFAI-G-----------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGF 368 (405)
T ss_pred HHHHHh-C-----------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhH
Confidence 222111 1 223344455555666666667778889999999888 9999999
Q ss_pred hhhHHhHhHHHHHHHHHHhhcccc-hhhHHHH
Q 008953 199 AYFAFSTGELVALTVLVWVQTHSG-MDVGFGV 229 (547)
Q Consensus 199 ~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~ 229 (547)
.+...++|..++|.+.|++.++.| |+..+..
T Consensus 369 ~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 369 TYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 999999999999999999999988 8766654
No 137
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.30 E-value=8e-11 Score=123.78 Aligned_cols=166 Identities=14% Similarity=0.033 Sum_probs=125.7
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhcCCChh---hHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 008953 46 QAFEIMAIAAVGNNLITYVINEMHFSLS---NSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLS 122 (547)
Q Consensus 46 ~~~~~~~~~~~~~~l~~yl~~~lg~~~~---~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~ 122 (547)
.++.......+..+++.|+.+..+.... ..+.+.....++..++.++.|+++||+ |||+.+..+.+...++.+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence 3334444445567778888764442221 234555666677788899999999996 999999988777766666555
Q ss_pred HhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhH
Q 008953 123 VQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA 202 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 202 (547)
.. .+...+++.+++.|++.+...+...+.+.+..|+++ |++.+++++..
T Consensus 307 ~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~ 355 (408)
T PRK09874 307 FV-------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSF 355 (408)
T ss_pred Hh-------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHH
Confidence 43 234456677888899999888888888888888777 89999999999
Q ss_pred HhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 203 FSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 203 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
.++|..+||.++|++.++.||++.|++.++..+++.+..+.
T Consensus 356 ~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 356 RDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887777766555444
No 138
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.30 E-value=6.5e-11 Score=123.85 Aligned_cols=171 Identities=13% Similarity=-0.018 Sum_probs=142.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.++..++..++.....+....+.+.|+++ +|.++.+.+.+.+...++..+..+++|++.||+ |+|+.+.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 567777777777778888888999999965 999999999999998889999999999999997 999999999999998
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
..++++.+ ++.+.+++...+.|+..+...+....++.+. |+++ |+++.
T Consensus 283 ~~~~~~~~-------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q 330 (382)
T TIGR00902 283 RWAIIGAI-------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQ 330 (382)
T ss_pred HHHHHHhH-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHH
Confidence 88887765 3456678888999999999999988888887 7766 78888
Q ss_pred hhhhh-HHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953 197 NAAYF-AFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 197 ~~~~~-~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~ 242 (547)
++++. ...+|..++|.++|++.++.|+ ..|++.++..+++++...
T Consensus 331 ~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 331 ALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHH
Confidence 88764 5689999999999999999986 567766666666654443
No 139
>PRK12382 putative transporter; Provisional
Probab=99.29 E-value=4.3e-11 Score=125.46 Aligned_cols=162 Identities=18% Similarity=0.197 Sum_probs=127.8
Q ss_pred HHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhc
Q 008953 47 AFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAH 126 (547)
Q Consensus 47 ~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~ 126 (547)
++.......+..+.+.|+.+ .|++ +.+.....+.++..++.++.|++.||+ |+||.+..+..+..++.++....
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~-- 299 (392)
T PRK12382 226 ALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA-- 299 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc--
Confidence 33445555666778888865 5654 355666677777888999999999996 99999998888877777666554
Q ss_pred cCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHh
Q 008953 127 LPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTG 206 (547)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 206 (547)
.+...+.+..++.|++.+...+...+...|.+|+++ |++.+++++...++|
T Consensus 300 -----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g 350 (392)
T PRK12382 300 -----------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIA 350 (392)
T ss_pred -----------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHH
Confidence 233455667788888888878888888889898877 999999999999999
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 207 ELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 207 ~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
..++|.+.|++.++.||+..|.+.++..+++++..+.
T Consensus 351 ~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 351 YGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887777766655544
No 140
>PRK03545 putative arabinose transporter; Provisional
Probab=99.29 E-value=1.5e-10 Score=121.36 Aligned_cols=172 Identities=16% Similarity=0.001 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 118 (547)
++...+..++.....+....++++|+.+++|.+..+++.+...+.++..++.++.|+++||+ |||+.. .+..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence 44445555555666666678888999888999999999999999999999999999999996 987654 4444333333
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA 198 (547)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 198 (547)
.+..... .+...+++..++.|++.+...+...+.+.+..|+ . |++++++
T Consensus 285 ~~l~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~ 333 (390)
T PRK03545 285 LLLLPAA------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A------TDVAMAL 333 (390)
T ss_pred HHHHHHh------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c------HHHHHHH
Confidence 3322211 2344556667777888777666677777777663 4 7888999
Q ss_pred hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 199 AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 199 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
++...++|..+||.++|++.++.|++..|+..++..+++++..+.
T Consensus 334 ~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 334 FSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999888777777666554
No 141
>PRK15075 citrate-proton symporter; Provisional
Probab=99.28 E-value=6.2e-11 Score=126.23 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH-HH
Q 008953 43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI-LL 121 (547)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~-l~ 121 (547)
++..++....++.+..+.|.|+++.+|++..++++....+.++..++.+++|+++||+ |||+.+.++.+...+... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 322 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence 4444556677888889999999988999999999988888899999999999999997 999988776544332221 11
Q ss_pred HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhh
Q 008953 122 SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF 201 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 201 (547)
..... ........+..++.+++.+...+...++..|.+|++. |++++++.+.
T Consensus 323 ~~~~~----------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~ 374 (434)
T PRK15075 323 SWLVA----------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYS 374 (434)
T ss_pred HHHHc----------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHH
Confidence 11111 0112222333344455566666666778899999888 8889988655
Q ss_pred HHh-HhHHHHHHHHHHhhcccchh
Q 008953 202 AFS-TGELVALTVLVWVQTHSGMD 224 (547)
Q Consensus 202 ~~~-ig~~~~~~i~~~l~~~~g~~ 224 (547)
..+ +++.++|.+.+++.++.|++
T Consensus 375 ~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 375 LATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHhhhHHHHHHHHHHhcCCc
Confidence 444 45788999999999988854
No 142
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.28 E-value=7.4e-11 Score=125.77 Aligned_cols=177 Identities=15% Similarity=0.041 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.+|...+..++.....+++..++|.|+++..|+++.+++++...+.+...++.+++|+++||+ |+++....+.....+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~ 329 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL 329 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence 4567777777777777888999999999998999999999999999999999999999999996 754432333222211
Q ss_pred ---HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 117 ---GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 117 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
+.+.+... +. .+........+..|++..+..........|.+|++. |+
T Consensus 330 ~~~~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g 380 (438)
T TIGR00712 330 VTIAVIVYWMN---PA--------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG 380 (438)
T ss_pred HHHHHHHHHhc---CC--------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------ee
Confidence 11111111 00 112222233333444322222222345678899877 89
Q ss_pred cchhhhhhHHhHhH-HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 194 SYFNAAYFAFSTGE-LVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 194 ~~~~~~~~~~~ig~-~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
++.++++...++|+ +++|.+.|++.++.||...|++.++..+++++..+.
T Consensus 381 ~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 381 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred eehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999988888774 689999999999999999988766655555444433
No 143
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.27 E-value=1.1e-10 Score=124.13 Aligned_cols=177 Identities=14% Similarity=0.034 Sum_probs=113.9
Q ss_pred hHHHHHHHHHH-HHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQA-FEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 37 ~~~~~~~~~~~-~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
|..+.+.+..+ +....+|.+..|+|.|+.+++|++..+.+...+...++..++.++.|+++||+ |||+.+.++.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~ 320 (432)
T PRK10406 242 RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAA 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHH
Confidence 33444444433 44778888999999999988999999998888888888888899999999996 99998877655433
Q ss_pred HHHHHHHH-hhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 116 SGFILLSV-QAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 116 i~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
+....... ... ..+....+....+..++.+...+...++..|.+|++. |++
T Consensus 321 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t 372 (432)
T PRK10406 321 LFTVPILSALQN----------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RAL 372 (432)
T ss_pred HHHHHHHHHHHc----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cch
Confidence 33222211 111 0111111111122222233333456678899999988 999
Q ss_pred chhhhhhHHhH-hHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHH
Q 008953 195 YFNAAYFAFST-GELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 195 ~~~~~~~~~~i-g~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~ 243 (547)
++++.+...++ ++...|.+.+++.. .| |...+++.++..+++++..+.
T Consensus 373 ~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 373 GVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99998776554 34558888886644 45 555566555555555554444
No 144
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.27 E-value=1.2e-10 Score=121.82 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=119.3
Q ss_pred HHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 008953 51 MAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQL 130 (547)
Q Consensus 51 ~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~ 130 (547)
..+.....++|.|+++ .|.++.+.+.+.+...++..++.++.|+++||+ |+|+.+..+.....++.+.....
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~~~------ 285 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAMLSQ------ 285 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHhhh------
Confidence 3344445678888865 799999999999999999999999999999997 99999888877766655443210
Q ss_pred CCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHH
Q 008953 131 KPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVA 210 (547)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~ 210 (547)
.......++.+++.+...|...+.+.|..|+++ ++...+.++...++|.++|
T Consensus 286 ----------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~ig 337 (381)
T PRK03633 286 ----------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLG 337 (381)
T ss_pred ----------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 112344556676666677888888888888765 6666777777889999999
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953 211 LTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 211 ~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~ 242 (547)
|.++|++.+++||++.|.+.+...++..+..+
T Consensus 338 p~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 338 PSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987766665544443
No 145
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.26 E-value=1.8e-10 Score=121.28 Aligned_cols=176 Identities=14% Similarity=0.038 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHH-HHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTML-IFGFVEL 115 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~~ 115 (547)
|.++...+..++....+++...+.|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence 55677777788888888999999999985 5999999999999999999999999999999996 9988764 2333333
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.+.+...... ...+....++..++.|++.+...+. .+...|..| ++ |+++
T Consensus 300 ~~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~~ 351 (402)
T TIGR00897 300 IFTLALYYIPQH--------------------FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGAA 351 (402)
T ss_pred HHHHHHHHHHHc--------------------cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHHH
Confidence 333332221100 0022344555666677776665443 455566544 45 8999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~ 242 (547)
+++.+...++|..++|.+.+++.+..||...|++.++..+++.+...
T Consensus 352 ~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 352 MSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887766666554443
No 146
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.26 E-value=1.1e-10 Score=125.23 Aligned_cols=172 Identities=9% Similarity=-0.031 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc-cchHHHHHHHHH--H
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF-LGSFWTMLIFGF--V 113 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~-~Gr~~~~~~~~~--~ 113 (547)
+.++..++..++..+.++....+++.|+.+ +|++..+++++.+...++..++.+++|+++||. +++|+...++.. .
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 456777777777778888888899999865 899999999999999999999999999999983 244544443332 2
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
..++.+++... .+...+++.+++.|++.+...+...+++.|.+|+++ ++
T Consensus 320 ~~l~~ll~~~~-------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g 368 (455)
T TIGR00892 320 NGLTHLLCALA-------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FS 368 (455)
T ss_pred HHHHHHHHHHh-------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------Hh
Confidence 23333333333 234556777888999999888888999999999877 89
Q ss_pred cchhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHH
Q 008953 194 SYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~ 240 (547)
+.+++++...++|..+||.++|++.+..+ |++.|++.++..+++.+.
T Consensus 369 ~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 369 SAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred hHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 99999999999999999999999988774 999999877766655543
No 147
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.25 E-value=1e-10 Score=123.67 Aligned_cols=159 Identities=13% Similarity=-0.055 Sum_probs=126.6
Q ss_pred HHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 008953 53 IAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKP 132 (547)
Q Consensus 53 ~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 132 (547)
.+++..++|.|+++.+|.++.+.+++.+...++..++.++.|+++||. ++++.+..+.+...++.+++...
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM-------- 309 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence 345667889999888999999999999999999999999999999995 88888888777777666665543
Q ss_pred CCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHH
Q 008953 133 PKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALT 212 (547)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~ 212 (547)
++.....+..++.|++.+...+...+++.|.+|++. |++.+++++...++|..+||.
T Consensus 310 -----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~ 366 (417)
T PRK10489 310 -----------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAA 366 (417)
T ss_pred -----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHH
Confidence 234445666777788877766777788899999877 899999999999999999999
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 213 VLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 213 i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+.|++.+..|++..++..++..++..+....
T Consensus 367 l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 367 LLGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887665544443333333
No 148
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.24 E-value=2e-11 Score=107.20 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHH
Q 008953 80 TNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLAL 159 (547)
Q Consensus 80 ~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (547)
+.+.++..++.++.|+++||+ |||+.+..+.....++.+++... .+...+.+.+
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~ 58 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS-------------------------SNITVLIIAR 58 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh-------------------------ccHHHHHHHH
Confidence 345667788999999999997 99999999888888887777664 2355677788
Q ss_pred HHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008953 160 YLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLF 239 (547)
Q Consensus 160 ~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~ 239 (547)
++.+++.+...+...+++.|.+|+++ |++..++.+...++|..++|.+.+++.+..+|++.|++.....+++.+
T Consensus 59 ~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 59 FLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI 132 (141)
T ss_pred HHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 89999999888899999999999887 899999999999999999999999999988999998887666555554
Q ss_pred HHHH
Q 008953 240 GVVS 243 (547)
Q Consensus 240 ~~~~ 243 (547)
....
T Consensus 133 ~~~~ 136 (141)
T TIGR00880 133 LLAF 136 (141)
T ss_pred HHhh
Confidence 4443
No 149
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.22 E-value=2.2e-10 Score=122.12 Aligned_cols=167 Identities=14% Similarity=0.011 Sum_probs=116.6
Q ss_pred hhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008953 55 AVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPK 134 (547)
Q Consensus 55 ~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 134 (547)
.+..+.+ +..+++|++..+.+.......++..++.+++|+++||+ |||+.+.++.++..++.+++.+.......
T Consensus 302 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 375 (481)
T TIGR00879 302 AIMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVT---- 375 (481)
T ss_pred ehHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccC----
Confidence 3334444 44567899998889999999999999999999999996 99999998887777776666532110000
Q ss_pred CCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH
Q 008953 135 CNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL 214 (547)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~ 214 (547)
. .+.......+....+..+.......+...++..|.+|+++ |++++++.+...++|.+++|.+.
T Consensus 376 -----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~ 439 (481)
T TIGR00879 376 -----G-----SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLF 439 (481)
T ss_pred -----C-----cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000022222222222222222334666777799999887 89999999999999999999999
Q ss_pred HHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 215 VWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 215 ~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+++.++.+|++.|++.+++.+++.+....
T Consensus 440 ~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 440 PTMLESIGVGGVFIFFGGLNVLGLIFVYF 468 (481)
T ss_pred HHHHHhcCccceehhHHHHHHHHHHHHhe
Confidence 99999889999998877666665555444
No 150
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.22 E-value=4.5e-09 Score=107.13 Aligned_cols=88 Identities=15% Similarity=0.159 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHH
Q 008953 422 QRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYC 501 (547)
Q Consensus 422 ~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~ 501 (547)
+.+.+++++..+..+...+.+ ... .......+.|...+..+...-+|..+.+|+++.++..|+++.
T Consensus 319 ~vl~~~lvi~~~~~~~~~~~~-------------~~~-~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyal 384 (438)
T COG2270 319 PVLMIGLVILSIAALYLIFLE-------------GEL-DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYAL 384 (438)
T ss_pred eeehHHHHHHHHHHHHHHHcc-------------ccH-HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhh
Confidence 446777776666555444432 122 233344788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 008953 502 SYSFGFYLSSLLVSFVNKVTSS 523 (547)
Q Consensus 502 ~~~~G~~lg~~i~~~l~~~~~~ 523 (547)
.....+.+||.+++.+.++|++
T Consensus 385 tgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 385 TGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999876
No 151
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.21 E-value=2.8e-10 Score=115.72 Aligned_cols=184 Identities=15% Similarity=0.028 Sum_probs=145.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
.+..|.+++.++...-++-++..++|.|++++++.++.+++.....+.+...+.++++|+|+||+ |.+|++.+......
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 46789999999999888889999999999999999999999999999999999999999999997 99999888888877
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++..+.....+ . . .+..+...++...+.+++..|.-+..+..++...+|++ -+..
T Consensus 296 ~~~~~l~~~~~--~-----------~-----~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v 350 (417)
T COG2223 296 LAAALLSLFLT--G-----------F-----GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAV 350 (417)
T ss_pred HHHHHHHcccc--c-----------c-----ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHH
Confidence 77777666421 1 0 00123344444444555666666667778888888864 4677
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHcC
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVSGT 245 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~~~ 245 (547)
.++.....++|+..-|...+...+.+| +...|++.....+++++..+...
T Consensus 351 ~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 351 TGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred HHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999988888 88889887777777766555433
No 152
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.21 E-value=5.9e-11 Score=122.70 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH-H-H
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF-V-E 114 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~-~-~ 114 (547)
+.++.+.+..++.....+.+..+.|.|+.+.+|++..+.+...+.+.++..++.++.|+++||..+||+....... . .
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4567777777777778888889999999999999999999999999999999999999999985244443322211 1 1
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++....... +. .+.....+..++.|+......+....+..|.+|++. |++
T Consensus 296 ~~~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 346 (379)
T TIGR00881 296 IVSLLVYWLN---PA--------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGT 346 (379)
T ss_pred HHHHHHHhcC---cc--------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHH
Confidence 1111111110 00 223334444555665555555556677899999887 999
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchhhHH
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGF 227 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f 227 (547)
+.++++...++|..++|.+.|++.++.||++.|
T Consensus 347 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 347 AAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 999999999999999999999999999998754
No 153
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.20 E-value=1e-09 Score=112.34 Aligned_cols=138 Identities=12% Similarity=0.048 Sum_probs=104.7
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 008953 59 NLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMV 138 (547)
Q Consensus 59 ~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 138 (547)
.+..|..+.+| +..-+-|.+.+|.+.+....+.+-|+.||+ |-|.+.+++..+..+|..+=.++.. |.+
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~-p~v-------- 134 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSL-PFV-------- 134 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccC-ccc--------
Confidence 34456666677 666678889999999999999999999996 9999999999999999988777643 321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhh
Q 008953 139 TDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ 218 (547)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~ 218 (547)
++.......+.+..+.+...-.+....+-+.+-+|++++ |..+..+-.++..+|.+++.++...+.
T Consensus 135 --------~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV 200 (480)
T KOG2563|consen 135 --------PPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILV 200 (480)
T ss_pred --------cccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceec
Confidence 112222356666666666666665555566678899988 899998888888888888888877776
Q ss_pred ccc
Q 008953 219 THS 221 (547)
Q Consensus 219 ~~~ 221 (547)
.+.
T Consensus 201 ~~~ 203 (480)
T KOG2563|consen 201 PSS 203 (480)
T ss_pred CCC
Confidence 554
No 154
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.19 E-value=6.6e-10 Score=120.21 Aligned_cols=179 Identities=17% Similarity=0.124 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHH-HHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVT-NFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG 117 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~-~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 117 (547)
.|.+.+..++.....+....+.++|+.+++|++..+.+.+.. ...++..++.+++|+++||+ |+||.+.++.++..+.
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 344444445555666666678899988889999999999875 55678899999999999997 9999877766554444
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953 118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197 (547)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 197 (547)
.+........ ..+...+.+..++..+..|...+...++..+..+++. +++.++
T Consensus 303 ~l~~~~l~~~---------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~g 355 (491)
T PRK11010 303 NAGYWLLSIT---------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFA 355 (491)
T ss_pred HHHHHHHHhc---------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHH
Confidence 3322211100 0122223334444444444444556777788888776 677788
Q ss_pred hhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcC
Q 008953 198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGT 245 (547)
Q Consensus 198 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~ 245 (547)
+.+...++|..+++.+.|++.+..||+..|.+.+++.+++++.....+
T Consensus 356 l~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 356 LLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999998888999999999999999888777777766665544
No 155
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.18 E-value=6.7e-11 Score=113.31 Aligned_cols=137 Identities=13% Similarity=0.179 Sum_probs=109.5
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953 58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM 137 (547)
Q Consensus 58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 137 (547)
.-+.++...+.+.+.++..++.++|..-..+.+.++||+.||.+|-|..-++-+++..+|-+..+.-.
T Consensus 64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg------------ 131 (459)
T KOG4686|consen 64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG------------ 131 (459)
T ss_pred hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch------------
Confidence 44567777778888888889999999999999999999999999988766666666666766655421
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHh
Q 008953 138 VTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV 217 (547)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l 217 (547)
....++.+..+|+++|+|.--.......+...+|..++ ..-.++++....-+|..+-..+.+++
T Consensus 132 ----------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 132 ----------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred ----------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHH
Confidence 11456789999999999987777777888899999888 88889998888888888888888888
Q ss_pred hcccc
Q 008953 218 QTHSG 222 (547)
Q Consensus 218 ~~~~g 222 (547)
.+..+
T Consensus 196 y~~~~ 200 (459)
T KOG4686|consen 196 YDTMG 200 (459)
T ss_pred HHHHH
Confidence 77654
No 156
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.18 E-value=7.9e-10 Score=113.45 Aligned_cols=177 Identities=16% Similarity=0.092 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.++......++.....|...+++-+++++..|++....+++...|.++..++.+++|+++|| +.|+++.....+..+
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 567788888888889999999999999999999999999999999999999999999999999 888888887777776
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
....+.+..+ +....++..++.|+...........-.++..|+ . ++.+.
T Consensus 289 ~~l~l~~~~~------------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~-~------~~~a~ 337 (394)
T COG2814 289 ALLALTFTGA------------------------SPALALALLFLWGFAFSPALQGLQTRLARLAPD-A------ADLAG 337 (394)
T ss_pred HHHHHHHhcc------------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC-c------hHHHH
Confidence 6666665432 334455555566776665555555555663333 3 67888
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCc
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTL 246 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~ 246 (547)
+++....|+|.++|..++|.+.+++|+....++.++..+++++..+...+
T Consensus 338 sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 338 SLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888888777665433
No 157
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.18 E-value=6.2e-10 Score=113.03 Aligned_cols=162 Identities=9% Similarity=0.056 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh--cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINE--MHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
+.++...+..++....--++..|.+.|+.+. +|+++.+++...+.+.++..+++++++++.||+ |+||.+.++.++.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 4455555555555556667789999999854 799999999999999999999999999999996 9999988887776
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++.++..... ... ...+.++.|++.+...|...+...+.+|++. +.
T Consensus 219 ~~~~~l~~~~~-------------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~ 265 (310)
T TIGR01272 219 VLLSIGAALTH-------------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQ 265 (310)
T ss_pred HHHHHHHHHcC-------------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hh
Confidence 66654444321 111 2234557889999999999888888888642 22
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHH
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAA 233 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~ 233 (547)
+.++. ....+|+++.|.+.|.+.+..|.+.+|++..++
T Consensus 266 asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 266 GSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred hHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 33443 456789999999999999998988888765433
No 158
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.15 E-value=3.8e-09 Score=112.03 Aligned_cols=366 Identities=15% Similarity=0.076 Sum_probs=212.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhh-HHHHHHHH----HHHHHHHHhhhhHHhhcccchHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSN-SANIVTNF----IGTVFLLALLGGYLSDSFLGSFWTMLIFG 111 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~-~~~i~~~~----~~~~~~~~~~~G~laDr~~Gr~~~~~~~~ 111 (547)
+.+....+...+.....+........+.....+.+..+ .+...... .+...+..++.|.++||+ |||..+.+..
T Consensus 21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~ 99 (463)
T KOG2816|consen 21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPL 99 (463)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHH
Confidence 33444444444444444444456666666555544433 23333333 467788899999999998 9999999998
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHH--hccccccchhhhcccCCCCCCcccc
Q 008953 112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAI--GSGCVKPNMIAHGADQFDQSNPKQS 189 (547)
Q Consensus 112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gi--g~g~~~~~~~~~~~~~~~~~~~~~~ 189 (547)
+...+..+.+.+.. ++ +++ +.++ +.+...+...++++|...+++
T Consensus 100 ~~~~l~~~~~~~~~--------------------------~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~---- 145 (463)
T KOG2816|consen 100 FGTILPALCLLFQG--------------------------YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEE---- 145 (463)
T ss_pred HHHHHhHHHHHHHH--------------------------HH-Hhh---hcccccchhhhhhhhhhheeeccchhH----
Confidence 88888777776642 11 222 3332 233445666788899888887
Q ss_pred cccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCC-CchhHHHHHHHH
Q 008953 190 KKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS-IFTPIAQVFVAA 268 (547)
Q Consensus 190 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 268 (547)
|...+++.+.....+..++|..++.+....|....|+++.+..++.++......++..+++.+.. +.
T Consensus 146 --R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~---------- 213 (463)
T KOG2816|consen 146 --RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL---------- 213 (463)
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc----------
Confidence 89999999988899999999999999999999999999888777776665554444333222210 00
Q ss_pred HhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHH
Q 008953 269 MLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFAC 348 (547)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (547)
....+. +..+ .+ ...+++..+. ...+++.+...+..++.
T Consensus 214 -------~~~~~~---------------~~~~------~~------------~~~~~~~~~~-~~~~r~~l~l~l~~~~~ 252 (463)
T KOG2816|consen 214 -------RELTPG---------------SLDS------SH------------VADAFQSLTK-VGPDRLLLLLLLVAFLS 252 (463)
T ss_pred -------cccCCC---------------cccc------hh------------hhhhhhhhcc-cCCCccchHHHHHHHHH
Confidence 000000 0000 00 0000000000 01111111111111111
Q ss_pred HHHHHHHHhhhh-hhhhhhhhhccccCCCcceeC-cc----cccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhH
Q 008953 349 TIIFNTILAQLQ-TFSVQQGSAMNNKLTKNFHVP-PA----SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQ 422 (547)
Q Consensus 349 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~----~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~ 422 (547)
.. -...+.. ..+. ++...+ +++.. -+ ..+....+..++..|+.. +.++ .++
T Consensus 253 ~~---~~~~~~~~~~~~----yl~~~f--~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~-------~~l~-------~~~ 309 (463)
T KOG2816|consen 253 SL---PEAGGASDVLLL----YLKAKF--GWNKKEFSDLLSLVSILGIISQLLLLPLLS-------SILG-------EKR 309 (463)
T ss_pred HH---HHhcCceeEEEE----EEeeec--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh-------hhh
Confidence 11 1100000 1111 111111 11111 01 111122222333333322 2222 224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHH
Q 008953 423 RIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCS 502 (547)
Q Consensus 423 ~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~ 502 (547)
.+..|+..-.+...++++.. +.|+ ...............|...+++...+.++++|+..++....
T Consensus 310 ~i~lGl~~~~~~~~~~af~~--------------~~w~-~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i 374 (463)
T KOG2816|consen 310 LISLGLLSEFLQLLLFAFAT--------------ETWM-MFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGI 374 (463)
T ss_pred HhhHHHHHHHHHHHHHHHhc--------------cchh-hhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHH
Confidence 68889999999999999873 3443 33445556666777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 008953 503 YSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 533 (547)
Q Consensus 503 ~~~G~~lg~~i~~~l~~~~~~~~~~~w~~~~ 533 (547)
..+.+.+++.+-+.+...|.. |+++.
T Consensus 375 ~~l~~~~~~~~~~~i~~~t~~-----~~~~~ 400 (463)
T KOG2816|consen 375 EGLSGVVSPALYGNIFALTLD-----DLPGF 400 (463)
T ss_pred HHHhhhhhHHHHHHHHHHHHH-----hcccc
Confidence 999999999999999888765 66554
No 159
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.15 E-value=1.3e-09 Score=117.51 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHH-----HHHH--H
Q 008953 38 AAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFW-----TMLI--F 110 (547)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~-----~~~~--~ 110 (547)
.+|.+.+..++.....+.+..++|.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+ .... .
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~ 331 (476)
T PLN00028 253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV 331 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence 355555555555556667778899999988999999999999999999999999999999996 8762 2221 1
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953 111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK 190 (547)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (547)
.++..+..++.... .+.....+..++.+++.+...+...++..+..| +.
T Consensus 332 ~~l~~i~~~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~----- 380 (476)
T PLN00028 332 QTLGGVFCIWLGRA-------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS----- 380 (476)
T ss_pred HHHHHHHHHHhccc-------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh-----
Confidence 11111112222111 122223333444455444444445555555544 33
Q ss_pred ccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcC
Q 008953 191 KLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGT 245 (547)
Q Consensus 191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~ 245 (547)
|+...++.+...++|+.++|.+.+ .....+|+..|++.++..+++.+..+..+
T Consensus 381 -~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 -LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred -chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 788888887777778877776644 22334699999988877777766665544
No 160
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.14 E-value=1.4e-09 Score=116.46 Aligned_cols=184 Identities=13% Similarity=0.050 Sum_probs=149.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchH--HHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSF--WTMLIFGFV 113 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~--~~~~~~~~~ 113 (547)
.|.+..-++..++.+-+...+......|.++++|++..+...+.....+.+.++.++.|++.||+ |.| +++++++++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 35667777778888888899999999999999999999999999999999999999999999996 999 888887776
Q ss_pred HHHHHHHHHH--hhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953 114 ELSGFILLSV--QAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK 191 (547)
Q Consensus 114 ~~i~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 191 (547)
..+..+.-.+ ..+ . ....+.+.+++.-++.|+..|..++..-++.++..|+++
T Consensus 359 ~~~i~~~g~~G~~~~---~----------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------ 413 (477)
T PF11700_consen 359 WIIIPLYGLFGFWPS---F----------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------ 413 (477)
T ss_pred HHHHHHHHHHHhhhc---c----------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------
Confidence 6432222222 111 0 001345557777778999999999999999999999987
Q ss_pred cccchhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHcC
Q 008953 192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVSGT 245 (547)
Q Consensus 192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~~~ 245 (547)
.+..|+++.+..-..+.+||.+.|.+.+.+| .|+.+....++.+++++++...+
T Consensus 414 e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 414 EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence 7889999999999999999999999999887 88888887777777777765543
No 161
>PRK10504 putative transporter; Provisional
Probab=99.13 E-value=1.5e-09 Score=116.61 Aligned_cols=158 Identities=9% Similarity=-0.046 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.++..+...++....+.....+.|.|++..+|.++.+++++.....++..++.++.|+++||+ |||+++..+.++..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4455556666666666655556778888878999999999999888888888889999999997 999999988887777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+..++..... ..+...+.+..++.|++.+...+...++..+.+|++. ++.++
T Consensus 340 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 391 (471)
T PRK10504 340 VSLLFMLVAL----------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGN 391 (471)
T ss_pred HHHHHHhccc----------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchH
Confidence 6665554311 0122233344556778888777788888889899877 89999
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccch
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSGM 223 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~ 223 (547)
++.++...+|..+|+.++|.+.+..|+
T Consensus 392 ~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 392 SLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999988776665
No 162
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.13 E-value=1e-09 Score=105.32 Aligned_cols=163 Identities=11% Similarity=0.049 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH-HHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF-VEL 115 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~-~~~ 115 (547)
..+|.+.++.++...+.+-....-+.++++.+|+|+.+++.+.+...+.++..+++.|.++||+ |++-..+.+.. ...
T Consensus 264 ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl 342 (459)
T KOG4686|consen 264 PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTL 342 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHH
Confidence 4466777777777666666677789999999999999999999999999999999999999998 99987776655 455
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++...+.++.- + -+.+..++|+.........++.++-..|+++ .|++
T Consensus 343 ~~H~~l~Ft~l------------------------s---Py~~m~~lGLsysllAcslWP~va~~vpE~q------LGTa 389 (459)
T KOG4686|consen 343 LGHSGLFFTFL------------------------S---PYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTA 389 (459)
T ss_pred HHhhhHHhhhc------------------------c---HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcch
Confidence 56666666421 1 2344456677776666667888899999998 9999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccc---hhhHHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSG---MDVGFGVSAAA 233 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g---~~~~f~~~~~~ 233 (547)
++..+...|+|-++-|++.|.+.++-| |--.|++....
T Consensus 390 ygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~ 430 (459)
T KOG4686|consen 390 YGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL 430 (459)
T ss_pred HHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence 999999999999999999999988766 44556554443
No 163
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.13 E-value=1.5e-09 Score=113.45 Aligned_cols=169 Identities=12% Similarity=-0.021 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.++..++..++....+.....+.+.|+. +.|.+..+.+.+.+...++..+..++.|++.||+ |+|+.+..+.+...+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence 45666666666666666667788889985 5899999999999988888889999999999997 999999988888777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+.+++... ++.+.+++..++.|++.+...+....+..+. ++++ +++..
T Consensus 283 ~~~~~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~ 330 (382)
T PRK11128 283 RWGLMGST-------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQ 330 (382)
T ss_pred HHHHHHhh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHH
Confidence 76666554 3455667778888888887777777776665 4443 56677
Q ss_pred hhhh-hHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008953 197 NAAY-FAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 197 ~~~~-~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~ 240 (547)
+.+. ....+|..+||.++|++.+..|+. .|+..++..+++++.
T Consensus 331 ~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 331 ALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHH
Confidence 7765 445778899999999999998874 566555554444433
No 164
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.12 E-value=8.7e-09 Score=104.64 Aligned_cols=84 Identities=14% Similarity=-0.028 Sum_probs=68.6
Q ss_pred chhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc---------
Q 008953 150 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH--------- 220 (547)
Q Consensus 150 ~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~--------- 220 (547)
.++..++++.++.|.|.+...+...+++++..|+++ +.+.+++......+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 456778999999999999999999999999999887 77789999999999999999999977632
Q ss_pred -------cchhhHHHHHHHHHHHHHH
Q 008953 221 -------SGMDVGFGVSAAAMALGLF 239 (547)
Q Consensus 221 -------~g~~~~f~~~~~~~~~~l~ 239 (547)
..|+++|++.++..++..+
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i 107 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAI 107 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888865544333333
No 165
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.12 E-value=3.7e-09 Score=111.40 Aligned_cols=173 Identities=11% Similarity=-0.063 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.++...+..++.....+....+.|.|+.+++|+++.+.++......++..++.++.|+++||+ |+|+.+.++.+...+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~ 293 (406)
T PRK15402 215 RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVA 293 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 3455555555555555556666788888888999999999888878888889999999999997 999999988887777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+..+........ ..+...+++..++.++|.+...+......... ++++ |++..
T Consensus 294 g~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~ 346 (406)
T PRK15402 294 GLLLAALATVIS--------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVS 346 (406)
T ss_pred HHHHHHHHHHcc--------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHH
Confidence 777666542100 12344456677778888887766665554333 3344 88999
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG 237 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~ 237 (547)
+.+++...+|..+|+.+.+++.+..++....+..++..++.
T Consensus 347 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 347 AAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999988877665545444433333
No 166
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.12 E-value=1.9e-09 Score=114.27 Aligned_cols=149 Identities=15% Similarity=0.005 Sum_probs=107.9
Q ss_pred HHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccC
Q 008953 49 EIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLP 128 (547)
Q Consensus 49 ~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~ 128 (547)
.....+.+..++|.|+.+ .|.++.+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..+..++......
T Consensus 243 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~-- 318 (426)
T PRK12307 243 IFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ-- 318 (426)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 334444567788999876 699999999998999999999999999999996 9999988887766555444433211
Q ss_pred CCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHH
Q 008953 129 QLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGEL 208 (547)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 208 (547)
.....+....+..+.+..+..+..+.++.|.+|++. |++++++.+...++|..
T Consensus 319 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~ 371 (426)
T PRK12307 319 ---------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT 371 (426)
T ss_pred ---------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence 111112122222222333334556778899999887 89999999999999999
Q ss_pred HHHHHHHHhhcccchhhHHH
Q 008953 209 VALTVLVWVQTHSGMDVGFG 228 (547)
Q Consensus 209 ~~~~i~~~l~~~~g~~~~f~ 228 (547)
++|.+.|++.++.|+....+
T Consensus 372 ~gp~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 372 FNSMAATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHHHHHHcccHHHHHH
Confidence 99999999999988665433
No 167
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.12 E-value=1.2e-09 Score=117.34 Aligned_cols=178 Identities=13% Similarity=-0.036 Sum_probs=121.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHH--------
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTM-------- 107 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~-------- 107 (547)
++.+|...+..++....++.+..|+|.|+.+.+|++..++++..+...++..++.+++|+++||+ ++|+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI 338 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence 35688888889999999999999999999999999999999999999999999999999999996 654211
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc
Q 008953 108 LIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK 187 (547)
Q Consensus 108 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~ 187 (547)
..+......+..++..... . .+....++...+.+.+.++..+.......|..|+ .
T Consensus 339 ~~~~~~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-- 393 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALPYL-S---------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F-- 393 (465)
T ss_pred HHHHHHHHHHHHHHHHHHc-C---------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H--
Confidence 1111111111111111100 0 1122233333344444444444444444555553 3
Q ss_pred cccccccchhhhhhHHhHhHHHHHHHHHHhhccc---chhhHHHHHHHHHHHHHHHHHH
Q 008953 188 QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS---GMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 188 ~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~---g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
++...++.+...++|+.++|.+.|++.+.. +|+..|.+.++..+++.+....
T Consensus 394 ----~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 394 ----LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 788999999999999999999999887643 3888888877776666555443
No 168
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.11 E-value=7.5e-10 Score=116.15 Aligned_cols=194 Identities=12% Similarity=0.057 Sum_probs=139.8
Q ss_pred CCCCCCcCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccch-
Q 008953 26 RPSNPNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVIN-EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGS- 103 (547)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr- 103 (547)
.+.++.-+.+||.+++..+..+.....+.....-.-+|+++ +.+.+.+..|++.++..++..+..+..|+.+.|. |+
T Consensus 23 ~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~ 101 (488)
T KOG2325|consen 23 LSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSV 101 (488)
T ss_pred cccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCc
Confidence 34445557789999999999999888887777777888875 4677888899999999999999999999999996 76
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC
Q 008953 104 FWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ 183 (547)
Q Consensus 104 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~ 183 (547)
|+.++.+.++..+|.++.......|. +..+.++++|++.|+|.+.. +..-+++++....
T Consensus 102 k~Pli~s~ii~~~g~llY~~l~~~~~--------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~ 160 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNLLYLALAYVPN--------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTV 160 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhccc--------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc
Confidence 88888999999999888844333232 35678999999999987754 4556788887666
Q ss_pred CCcccccccccchhhhhhHHhHhHHHHHHHHHHh----hccc--------c-hhhHHHHHHHHHHHHHHHHHHcCce
Q 008953 184 SNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV----QTHS--------G-MDVGFGVSAAAMALGLFGVVSGTLY 247 (547)
Q Consensus 184 ~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l----~~~~--------g-~~~~f~~~~~~~~~~l~~~~~~~~~ 247 (547)
++ |.++++....+..+|..+||.+...+ ...+ . +..+-|+.+++.++.++.+....++
T Consensus 161 ~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 161 ED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred cc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 66 77778776666666666666664433 2211 1 2344555555555555554444333
No 169
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.11 E-value=9.4e-10 Score=115.54 Aligned_cols=171 Identities=12% Similarity=-0.014 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc---CCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEM---HFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 113 (547)
|.++..++..++....+.....+.+.|+.+.+ +.+....+.+.+...+...++.++.|++.||+ |||+.+.++.++
T Consensus 215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l 293 (396)
T TIGR00882 215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTI 293 (396)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Confidence 33444444444444455455567888887765 45566678888888888888999999999996 999999998887
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
..++..+...+ .+...+++..++.+++..........+..+..+++. ++
T Consensus 294 ~~l~~~~~~~~-------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a 342 (396)
T TIGR00882 294 MSVRIIGSSFA-------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SA 342 (396)
T ss_pred HHHHHHHHHhc-------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EE
Confidence 77776665554 234445666777777765544444445555556544 66
Q ss_pred cchhh-hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008953 194 SYFNA-AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLF 239 (547)
Q Consensus 194 ~~~~~-~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~ 239 (547)
+..+. ++....+|..+++.++|++.+..||+.+|.+.++..++..+
T Consensus 343 t~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 343 TIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred EeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 66665 56788999999999999999999999999987666555443
No 170
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.10 E-value=1e-09 Score=116.08 Aligned_cols=165 Identities=10% Similarity=-0.007 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHH-HHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVIN-EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTM-LIFGFVE 114 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~-~~~~~~~ 114 (547)
+.+|...+..++....++.+..++|.|+.+ ..|++..+++.......++..++.+++|+++||+ +||+.. ....+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA 320 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence 456777788888888899999999999976 3477888999999999999999999999999996 877753 3333333
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++. .+..... ... ....+..+.++|.....+...+...|.+|+++ |++
T Consensus 321 ~~~~-~~~~~~~-----------------------~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~ 369 (412)
T TIGR02332 321 AAGW-LLASATD-----------------------HNL-IQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAI 369 (412)
T ss_pred HHHH-HHHHhcC-----------------------CHH-HHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHH
Confidence 3332 2222110 111 11112222233333223333344466777776 899
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHH
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAA 233 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~ 233 (547)
++++.+...++|.+++|.+.|.+.+..| |++.|++.++.
T Consensus 370 a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 370 AIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999999999999999875 99988876543
No 171
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.10 E-value=3.4e-10 Score=116.49 Aligned_cols=155 Identities=15% Similarity=0.065 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhH-HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVG-NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
+.++..+...++.....+... .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+.....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence 445556666666666666666 6778888777999999999999999999999999999999996 99999888776666
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++..+..... .+...+++..++.|++.+...+...+++.|.+|+++ |++.
T Consensus 289 ~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 338 (365)
T TIGR00900 289 LAILVVGLTP------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRV 338 (365)
T ss_pred HHHHHHHhhc------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHH
Confidence 6665555431 124556677788899999888888999999999877 9999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccc
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSG 222 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g 222 (547)
+++++...++|..++|.+.|++.++.|
T Consensus 339 ~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 339 FGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999988654
No 172
>TIGR00895 2A0115 benzoate transport.
Probab=99.08 E-value=6.6e-10 Score=115.72 Aligned_cols=148 Identities=16% Similarity=0.102 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+..+.+.+..++....++.+..++| ++.+++|.+..+.+.+.+...++..++.+++|+++||+ |||+.+....+....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 327 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVF 327 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHH
Confidence 3445555556667777777778888 66677999999999999999999999999999999997 999554443333332
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
..++.... .+...+.+..++.|++.+...+...+++.|.+|+++ |++++
T Consensus 328 ~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 376 (398)
T TIGR00895 328 AVLVGSTL-------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGV 376 (398)
T ss_pred HHHHHHHh-------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHH
Confidence 22222211 223345566677888888888899999999999887 89999
Q ss_pred hhhhhHHhHhHHHHHHHHHHh
Q 008953 197 NAAYFAFSTGELVALTVLVWV 217 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l 217 (547)
++.+...++|..++|.+.|++
T Consensus 377 g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 377 GWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999876
No 173
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.05 E-value=5e-09 Score=109.80 Aligned_cols=174 Identities=16% Similarity=0.070 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIG-TVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG 117 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 117 (547)
++..+...++..........+.+.|+.+ +|+++.+.+.+...... ...++.+++|++.||+ |+||.+.++.++..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 4555555566666666666788889875 79999999998887764 5567789999999996 9999998876655333
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC-CCcccccccccch
Q 008953 118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ-SNPKQSKKLSSYF 196 (547)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~ 196 (547)
............ ......++....+.+++.+...+...+...+..++ +. +++.+
T Consensus 288 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~ 342 (390)
T TIGR02718 288 ALLWFAQAAFWL-------------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDV 342 (390)
T ss_pred HHHHHHHHHccc-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHH
Confidence 222221111000 01122233333444555666666666776666665 44 78899
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLF 239 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~ 239 (547)
+..+...++|..++|.++|++.++.|++..|.+.+++.+++++
T Consensus 343 ~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 343 TAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888887665555543
No 174
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.05 E-value=5.8e-09 Score=109.08 Aligned_cols=169 Identities=12% Similarity=0.060 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 118 (547)
.|...+..++.....+....++++|+.+.+|+++.+.+.+.+...++..++.++.|+++||+ |+|+.+.++..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 44444444555555555567778898888999999999999999999999999999999996 99999988887777766
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccC-CCCCCcccccccccchh
Q 008953 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQ-FDQSNPKQSKKLSSYFN 197 (547)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~ 197 (547)
+++....+ +.....+..++.++|.+...+.......+. .+++. ++.+
T Consensus 280 ~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~-- 327 (382)
T PRK10091 280 LMLFFFGG------------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA-- 327 (382)
T ss_pred HHHHHHHh------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--
Confidence 55543211 122333444445555444333333333333 33222 3332
Q ss_pred hhhhHHhHhHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHH
Q 008953 198 AAYFAFSTGELVALTVLVWVQTH-SGMDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 198 ~~~~~~~ig~~~~~~i~~~l~~~-~g~~~~f~~~~~~~~~~l~~ 240 (547)
..+...++|..+||.++|++.+. .+|++.+.+.++..++++..
T Consensus 328 ~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 328 GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 23556789999999999998885 57999998876655554433
No 175
>PRK10133 L-fucose transporter; Provisional
Probab=99.02 E-value=7.4e-09 Score=110.40 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHh-hhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYV-INEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG 117 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 117 (547)
++...+..++.....++...|.+.|+ ++.+|+++.+++.....+.++..++++++|++.||+ |+||++..+.++..++
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 338 (438)
T PRK10133 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMAL 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 34444555666666666778889996 567899999999999999999999999999999996 9999988886666555
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953 118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197 (547)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 197 (547)
..+..+.. +. .......+.|++.+...|...+...+.+|++. +.+.+
T Consensus 339 ~~~~~~~~-------------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~ 385 (438)
T PRK10133 339 CLISAFAG-------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSS 385 (438)
T ss_pred HHHHHHcC-------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchh
Confidence 44433321 11 12345667899999999999999999887642 33444
Q ss_pred hhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHH
Q 008953 198 AAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALG 237 (547)
Q Consensus 198 ~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~ 237 (547)
+..+ ..+|..++|.+.|++.+..| -+..|++..++.+..
T Consensus 386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~ 425 (438)
T PRK10133 386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_pred HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 4433 34678888899999999887 788888765544433
No 176
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.01 E-value=2.7e-09 Score=114.92 Aligned_cols=157 Identities=10% Similarity=0.072 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.++..++..++..+.++....++|.|+++.+|+++.++++......++..++.+++|++.||+ |||+.+.++.++..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence 4566667777777888888888999999999999999999999999999999999999999996 999999988888777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+..++....+ + ..+...+....++.|+|.+...+.......+..|+++ |+++.
T Consensus 334 ~~~~~~~~~~-~--------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~ 386 (485)
T TIGR00711 334 GFYWRAFTFT-P--------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGS 386 (485)
T ss_pred HHHHHhccCC-C--------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHH
Confidence 7776653211 0 1233445555677888888877777777778888777 89999
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhccc
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHS 221 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~ 221 (547)
++++...++|..+|+.+.+.+.++.
T Consensus 387 ~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 387 SLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887653
No 177
>PRK10054 putative transporter; Provisional
Probab=99.00 E-value=5.1e-09 Score=110.13 Aligned_cols=174 Identities=14% Similarity=0.017 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhh--hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVIN--EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
|.++...+..++..+.+.....+.+.|+.. +.+.+....+.+.....+......++.|++.||+ ++|+.+..+.++.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence 445555566666666655555667777653 3455556667777777777677778899999996 9999998888777
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.++..+..... .+...+.++.++.++|.+...|...+.+.+..|++. |++
T Consensus 285 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~ 334 (395)
T PRK10054 285 VIGLVGFIFSG------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KAS 334 (395)
T ss_pred HHHHHHHHHcc------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------cee
Confidence 77776665431 233445566778888888878888888889888876 778
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~ 242 (547)
+++... ...+|..+||.++|++.++.|....|++.+....++.++..
T Consensus 335 ~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 335 YFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 877644 56689999999999999999988888776555555554444
No 178
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.00 E-value=4.6e-09 Score=114.05 Aligned_cols=169 Identities=13% Similarity=0.041 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHH------------HHHHHHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953 43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSAN------------IVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIF 110 (547)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~------------i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~ 110 (547)
....++..+.+|++..+.|.+++ +.|++..+++. ......++..++.+++++++||+ |||++++++
T Consensus 294 ~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~ 371 (502)
T TIGR00887 294 AGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMG 371 (502)
T ss_pred HHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHH
Confidence 33445566788888888888885 57886543221 12223345556788999999996 999999888
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953 111 GFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK 190 (547)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (547)
.++..++..++.+..+. . .....+....+...++..+..+....+.+|.+|++.
T Consensus 372 ~~~~~~~~~~l~~~~~~-~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~----- 425 (502)
T TIGR00887 372 FFILTVLFFVLGFAYNH-L--------------------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY----- 425 (502)
T ss_pred HHHHHHHHHHHHHHHHh-c--------------------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH-----
Confidence 77777666555543210 0 000111111111222223344566677899999988
Q ss_pred ccccchhhhhhHHhHhHHHHHHHHHHhhcc----------cchhhHHHHHHHHHHHHHHH
Q 008953 191 KLSSYFNAAYFAFSTGELVALTVLVWVQTH----------SGMDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 191 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~----------~g~~~~f~~~~~~~~~~l~~ 240 (547)
|+++.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 426 -R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 426 -RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred -HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998774 33445666665555555443
No 179
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.00 E-value=2.8e-09 Score=113.22 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.++.+++..++.....+....+.+.|.+..++ +..+.+.+.....++..++.++.|+++||+ |||+++.++.++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 556667777777777766655555556655555 556677777788888999999999999996 999999998887777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc-cccccccc
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK-QSKKLSSY 195 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~ 195 (547)
+.+++.+.. .+...+++..++.+++.+...+...++++|..|.++.+ ....++..
T Consensus 300 ~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 355 (437)
T TIGR00792 300 GYLIFFFAG------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLV 355 (437)
T ss_pred HHHHHHHcc------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHH
Confidence 766665431 12344556667788888888888899999987743210 01116788
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchh
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMD 224 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~ 224 (547)
++++++...+|..+++.+.|++.+..||.
T Consensus 356 ~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 356 YSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999998877764
No 180
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.99 E-value=4.8e-09 Score=113.72 Aligned_cols=155 Identities=6% Similarity=-0.037 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.++...+..++..+..++...++|.|+++.+|+++.+++.....+.++..++.+++|++.||+ |+|+.+..+.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 5566666777777788888888999999999999999999999999999999999999999997 999998888887777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+.+++..... ..+.....+..++.|+|.|...+.....+.+..|+++ ++.+.
T Consensus 338 ~~~~l~~~~~----------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~ 389 (495)
T PRK14995 338 SFYGLAMTDF----------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAG 389 (495)
T ss_pred HHHHHHHhcC----------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHH
Confidence 7766654311 0123334556778899999888888888888888887 88899
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcc
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTH 220 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~ 220 (547)
+.+++..++|..+|+.+.|.+.++
T Consensus 390 ~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 390 AIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888653
No 181
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.99 E-value=1.7e-08 Score=108.54 Aligned_cols=157 Identities=10% Similarity=-0.054 Sum_probs=109.0
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008953 58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNM 137 (547)
Q Consensus 58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 137 (547)
.+.|.+ .+++|.+..+..+......+...++.+++|+++||+ |||+.++.+.++..++.+++......+.
T Consensus 292 ~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~-------- 361 (479)
T PRK10077 292 YYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA-------- 361 (479)
T ss_pred HHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc--------
Confidence 334444 456899887777777777888889999999999996 9999999999888888777665421000
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHhccc-cccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHH
Q 008953 138 VTDSENCEEAKGFKASIFFLALYLVAIGSGC-VKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVW 216 (547)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~ 216 (547)
... ....+.++.+.+.+. ..|...+++.|.+|+++ |++++++.+...++|.++++.+.+.
T Consensus 362 ------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~ 422 (479)
T PRK10077 362 ------------PGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPM 422 (479)
T ss_pred ------------ccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 111 122233333333332 34677889999999887 9999999988888888887666554
Q ss_pred ------hhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 217 ------VQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 217 ------l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+.+..+|++.|++.++..+++.+..+.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (479)
T PRK10077 423 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455 (479)
T ss_pred HHhccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence 445778888888766655555544443
No 182
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.99 E-value=5.8e-11 Score=128.74 Aligned_cols=198 Identities=17% Similarity=0.146 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHH
Q 008953 41 FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFIL 120 (547)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l 120 (547)
.+++..+.+ +..++......+-+.+.++++.+++|++.+.+-++..+..++..++++|. .|-|.+-++.++.++|.++
T Consensus 7 ~~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l 84 (539)
T PF03137_consen 7 FLCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLL 84 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHH
Confidence 344444455 77777777778888999999999999999999999999999999999995 7777777888889999888
Q ss_pred HHHhhccCCCCCCCCCCCCCC----------Ccc---------------c----ccccchhHHHHHHHHHHHHhcccccc
Q 008953 121 LSVQAHLPQLKPPKCNMVTDS----------ENC---------------E----EAKGFKASIFFLALYLVAIGSGCVKP 171 (547)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~----------~~~---------------~----~~~~~~~~~~~~~~~l~gig~g~~~~ 171 (547)
+++ |.+.-+.|.....+ ..| . ......+..++++.++.|+|....++
T Consensus 85 ~~l----Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t 160 (539)
T PF03137_consen 85 FAL----PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT 160 (539)
T ss_dssp -----------------------------------------------------------------------SSS------
T ss_pred Hhc----cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence 876 55554444211100 001 0 11122356788899999999999999
Q ss_pred chhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhc---------------------ccc-hhhHHHH
Q 008953 172 NMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT---------------------HSG-MDVGFGV 229 (547)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~---------------------~~g-~~~~f~~ 229 (547)
...+++-|..++++ -..+.++++....+|.++|.++++.... +.| |...|++
T Consensus 161 LG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli 234 (539)
T PF03137_consen 161 LGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLI 234 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHH
Confidence 99999999988877 6778899999999999999999886531 123 6667777
Q ss_pred HHHHHHHHHHHHHHcCceeec
Q 008953 230 SAAAMALGLFGVVSGTLYYRN 250 (547)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~ 250 (547)
.+++.++..+.+....++.+.
T Consensus 235 ~g~~~~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 235 CGILLFLSAIPLFFFPKKLPG 255 (539)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHcCCccCCC
Confidence 666666655555554444433
No 183
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.99 E-value=2e-08 Score=104.46 Aligned_cols=164 Identities=13% Similarity=0.029 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.++...+...+.....+....+.|.|+.+++|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~ 284 (385)
T TIGR00710 206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAV 284 (385)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 3445555555566666677777888899889999999999999999999999999999999996 999999888777777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+.+++......+ ......+.+..++.|++.+...+.......|..|+ + |++..
T Consensus 285 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~g~~~ 337 (385)
T TIGR00710 285 SAVLLEITAILG--------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V------AGTAS 337 (385)
T ss_pred HHHHHHHHHHhc--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c------chHHH
Confidence 766665532100 01233344556667888888888888887887763 3 67888
Q ss_pred hhhhhHHhH-hHHHHHHHHHHhhcccchhhHHHH
Q 008953 197 NAAYFAFST-GELVALTVLVWVQTHSGMDVGFGV 229 (547)
Q Consensus 197 ~~~~~~~~i-g~~~~~~i~~~l~~~~g~~~~f~~ 229 (547)
++++..... |+..+|.+ +.+.+..+|...+..
T Consensus 338 ~~~~~~~~~~g~i~~~~~-~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 338 ALFGTLRLVLGAIVGYLV-SLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHHHH-HhccccChHHHHHHH
Confidence 887776654 55555554 566555555544443
No 184
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.98 E-value=1.6e-08 Score=107.12 Aligned_cols=184 Identities=11% Similarity=-0.038 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+..|.+++..++..-.+.+...++|.|+++.+ +............+...+.++++|+++||+ |++|++.++.+...+
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence 45788888888887777778789999988755 333333334455677889999999999996 999999998877666
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc---------
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK--------- 187 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~--------- 187 (547)
+........ |. ....+...+.+..+...++.|..+..+..++.+.||+++.+
T Consensus 329 ~~~~~~l~l--p~-----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~ 389 (462)
T PRK15034 329 FSALLFLTL--PG-----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSD 389 (462)
T ss_pred HHHHHHHHh--cc-----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccch
Confidence 654433321 11 01133445555555555666666667777777878741000
Q ss_pred ------cccccccchhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHH
Q 008953 188 ------QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 188 ------~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~ 242 (547)
.++.-+...|+......+|+.+-|.+.|...+..| +...|+...+..+++++.-+
T Consensus 390 ~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 390 EQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 00014556677777888888899988788776665 88888877666555554433
No 185
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.97 E-value=1.2e-08 Score=110.48 Aligned_cols=172 Identities=16% Similarity=0.072 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953 40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI 119 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 119 (547)
..++...++.++....+...+|.+..+.+|.+....|++.+++.++..++.++.+++.+|+ ++++.+..+.++..++.+
T Consensus 221 ~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~ 299 (524)
T PF05977_consen 221 RSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALL 299 (524)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHH
Confidence 3334444444455555566788899999999999999999999999999999999999996 999999888888888777
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953 120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA 199 (547)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 199 (547)
.++++ .+.+..++..++.|++.........+.+-+..|++. ||+.++++
T Consensus 300 ~lal~-------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~ 348 (524)
T PF05977_consen 300 LLALS-------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIY 348 (524)
T ss_pred HHhcc-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHH
Confidence 77775 345566777778888888877778888888899888 99999999
Q ss_pred hhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 200 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 200 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
++..+.+..+|.++.|.+.+++|.+..+.++++..+++.++...
T Consensus 349 ~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 349 QMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888777665555544433
No 186
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.97 E-value=1e-08 Score=105.87 Aligned_cols=156 Identities=13% Similarity=-0.022 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.++.+.+..++....++....++|.|+++ .|++..+.+.+.+.+.++..+++++.|+++||+-+||+.+.++.++..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence 455666666667777888888999999975 7999999999999999999999999999999962355566677677777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+.+.+....+ ... . ...++.|++.+...+...+.+.+..++++ + ++..+
T Consensus 276 ~~~~~~~~~~-----------------------~~~--~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~---~g~~~ 324 (355)
T TIGR00896 276 GLCGLLFAPM-----------------------HGL--W-AWALVLGLGQGGAFPLALTLIGLRSRQAA--Q---AAALS 324 (355)
T ss_pred HHHHHHHhhh-----------------------hHH--H-HHHHHHHHhhhhHhHHHHHHHHHhccCHH--H---HHHHH
Confidence 6665555321 111 1 13456788888888877776665554322 1 56777
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccc-hh
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSG-MD 224 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g-~~ 224 (547)
++.+...++|.+++|.+.|++.++.| |.
T Consensus 325 ~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 325 AMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 87777788899999999999998876 54
No 187
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.96 E-value=6.9e-09 Score=110.48 Aligned_cols=176 Identities=12% Similarity=0.009 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccch--------HHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGS--------FWTML 108 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr--------~~~~~ 108 (547)
..+|.+.+..++++++++.+..++|+|+.+.+|++..+.|+..++..+...+..+++|.++||. -+ ||.+-
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFN 336 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHH
Confidence 5589999999999999999999999999999999999999999999999999999999999996 43 22221
Q ss_pred -HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc
Q 008953 109 -IFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK 187 (547)
Q Consensus 109 -~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~ 187 (547)
++....++..+.+++..+ .+....++...+..-..|...+....-..|..|+.
T Consensus 337 ~i~~~~~ai~l~~l~~~~~-----------------------~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~--- 390 (466)
T KOG2532|consen 337 TIAFGGPAVFLLVLAFTSD-----------------------EHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQH--- 390 (466)
T ss_pred hHHHHHHHHHHHeeeecCC-----------------------CcchHHHHHHHHHHHHcccchhhhHhhhhhccchH---
Confidence 222223333333333211 11111112111111112222222222223334433
Q ss_pred cccccccchhhhhhHHhHhHHHHHHHHHHhhcc---cchhhHHHHHHHHHHHHHHHHHH
Q 008953 188 QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH---SGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 188 ~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~---~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
-+..+++.+...++...++|.+.+.+... ..|+..|++.++..+++-+.+..
T Consensus 391 ----a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 391 ----AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 46678889999999999999999998842 35999999988887777655544
No 188
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.95 E-value=1.6e-07 Score=94.64 Aligned_cols=181 Identities=15% Similarity=0.131 Sum_probs=115.9
Q ss_pred CCcCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHH
Q 008953 30 PNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLI 109 (547)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~ 109 (547)
+.+++..|+...+-.......+.. -+++- .+.++.|++..|.+.+.....+.+.+..++.|.++||+ ||||.-+.
T Consensus 30 ~~f~~Fqr~yl~vY~La~~aDWLQ---GpY~Y-~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~ 104 (354)
T PF05631_consen 30 PAFRRFQRKYLLVYLLAMAADWLQ---GPYLY-ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLL 104 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh---cchhH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHH
Confidence 344444455544444443333322 12221 22357999999999999999999999999999999997 99998888
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCC-ccc
Q 008953 110 FGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSN-PKQ 188 (547)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~-~~~ 188 (547)
.++++.+..+.--. +++..++++|++.|++.....+..-+.......++. +++
T Consensus 105 ~cily~~scl~k~~--------------------------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~ 158 (354)
T PF05631_consen 105 FCILYSLSCLTKHS--------------------------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE 158 (354)
T ss_pred HHHHHHHHHHHHhc--------------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 88888776653322 457789999999999999888877666543322221 111
Q ss_pred ccccccchhhhh-hHHhHhHHHHHHHHHHhhcccch--hhHHHHHHHHHHHHHHHHHH
Q 008953 189 SKKLSSYFNAAY-FAFSTGELVALTVLVWVQTHSGM--DVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 189 ~~~r~~~~~~~~-~~~~ig~~~~~~i~~~l~~~~g~--~~~f~~~~~~~~~~l~~~~~ 243 (547)
- .+.-++... ....+-++.+.+++.++.+..+. ..+|..+.++..++.+.+..
T Consensus 159 ~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 159 W--LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILK 214 (354)
T ss_pred H--HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHh
Confidence 1 222233222 12223345555566666666554 77898887776666655544
No 189
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.93 E-value=3.9e-08 Score=103.55 Aligned_cols=173 Identities=17% Similarity=0.149 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHH-HHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFI-GTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG 117 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~-~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 117 (547)
++.+++..++..........+.+.|+.+++|+++.+.+++..... ++..++.+++|++.||+ |||+.+.++.+...+.
T Consensus 211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~ 289 (402)
T PRK11902 211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVS 289 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 344444444433333323344566777889999999999886654 46788999999999996 9999887776665554
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHH----HHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLAL----YLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
.+.+......+ .+...+.+.. +..+++.+...+....++.+.+|.++
T Consensus 290 ~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------- 340 (402)
T PRK11902 290 NLGYWVLAVTP---------------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ-------- 340 (402)
T ss_pred HHHHHHHHhcC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH--------
Confidence 43332211100 1223333333 23455566666666777777777543
Q ss_pred cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
++++....++|..+++.++|++.++.||+..|.+.++..+++++..+.
T Consensus 341 --~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 341 --YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 445444556777766778999999999999999877776666555544
No 190
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.93 E-value=1.6e-08 Score=103.11 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+++..-++..++.+=...++......|...++|++..|..++.....+.+.+++++.|+|.||+ |.|+++.+++++..+
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~ 330 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI 330 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence 4666667777777777778888899999999999999999999999999999999999999996 999999999888877
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
..+...+. .....+.+.-.+.|...|+.++..-++.++..|+++ -++.|
T Consensus 331 ~~~~~~~~-------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fF 379 (438)
T COG2270 331 AALYLIFL-------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFF 379 (438)
T ss_pred HHHHHHHc-------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------cccee
Confidence 66665553 123345555568899999999999999999999988 67889
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHH
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~ 243 (547)
+.|....-....+||...+.+.+.+| -|..+....++..++++.+..
T Consensus 380 glyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 380 GLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence 99999999999999999999988776 676666666666666655544
No 191
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.93 E-value=5.3e-08 Score=102.36 Aligned_cols=167 Identities=8% Similarity=-0.048 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.++...+..++.....+....+.++++.+++|++..+.+.+...+.++..++.++.|++.||. +|+..+. +..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~ 293 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHH
Confidence 4455555555555555666666765555567899999999999999999999999999999994 5544343 3333333
Q ss_pred H-HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 117 G-FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 117 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
. .++.... .+.+.+.+..++.|++.+...+...+.+.+..|++ +++.
T Consensus 294 ~~~~l~~~~-------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~ 341 (394)
T PRK10213 294 SALVLTLWG-------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKA 341 (394)
T ss_pred HHHHHHHHh-------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHH
Confidence 3 3332222 22344556677788888888888888888877743 3444
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG 237 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~ 237 (547)
.++.....++|..+||.++|++.+..|++..+..+++..++.
T Consensus 342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 556666778999999999999999999988888766544333
No 192
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.92 E-value=2.4e-08 Score=105.23 Aligned_cols=153 Identities=13% Similarity=0.030 Sum_probs=107.8
Q ss_pred hhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008953 55 AVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPK 134 (547)
Q Consensus 55 ~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 134 (547)
....++|.|+++..+ ++.+.+++.+...++........+++.||.++.++.+..+.++..++..++....
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------- 295 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------- 295 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence 345677888876555 6778888877776665555544555555434777777777777777766665542
Q ss_pred CCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH
Q 008953 135 CNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL 214 (547)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~ 214 (547)
+...+.+...+.+++.+...|...+++.+..|+++ |++.+++++...++|..+||.++
T Consensus 296 ----------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~ 353 (400)
T PRK11646 296 ----------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGG 353 (400)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccch
Confidence 23334555566778888888888899999999888 99999999999999999999999
Q ss_pred HHhhcccc----hhhHHHHHHHHHHHHHH
Q 008953 215 VWVQTHSG----MDVGFGVSAAAMALGLF 239 (547)
Q Consensus 215 ~~l~~~~g----~~~~f~~~~~~~~~~l~ 239 (547)
|++.++.+ ....|+...+..+++++
T Consensus 354 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (400)
T PRK11646 354 GWLFDLGKALNQPELPWMMLGIIGLITLL 382 (400)
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 99987642 24455554444444433
No 193
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.89 E-value=7.5e-08 Score=100.25 Aligned_cols=167 Identities=8% Similarity=-0.017 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchH---HHHHH-HHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSF---WTMLI-FGF 112 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~---~~~~~-~~~ 112 (547)
+.+|.+.+..++....+|++..|+|.|+.+ .|++.. .+.......+... +..++++||. .|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 667889899999999999999999999965 678764 5555555444444 4458888885 543 33222 222
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953 113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL 192 (547)
Q Consensus 113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 192 (547)
+..+......... +.....+...+.+++.....+...++.+|.+|++. |
T Consensus 266 ~~a~~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------r 314 (368)
T TIGR00903 266 LIAAFFLALAFEL-------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------H 314 (368)
T ss_pred HHHHHHHHHHHcc-------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------c
Confidence 2233222322221 11223333444566666666777889999999988 9
Q ss_pred ccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953 193 SSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~ 242 (547)
+++.++.+...++|+.++|.+.+.+.. +.+..|.+.++..+++.+...
T Consensus 315 gt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 315 GKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887773 556667666655555555443
No 194
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.89 E-value=3.2e-08 Score=118.12 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChh-hHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLS-NSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~-~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
+.++..++..++..+..+....+++.|+.+.+|++.. +.+++.+...++..++.+++|+++||+ ++++.+.++.++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA 310 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence 4455555555555666667778899999999999999 999999999999999999999999996 99998888877777
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.+++... .+...+++..++.|++.++..+...+++.+..|++. |+++
T Consensus 311 ~~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~ 359 (1146)
T PRK08633 311 LSLFLLPTA-------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKV 359 (1146)
T ss_pred HHHHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhh
Confidence 766666654 234456667778888888888888899999999888 9999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcc-cchhhHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTH-SGMDVGFGVSAA 232 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~-~g~~~~f~~~~~ 232 (547)
+++.++..++|.++++.+++.+... +++...|++.+.
T Consensus 360 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 360 LAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999998888887766542 344445554433
No 195
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.84 E-value=3.8e-08 Score=117.48 Aligned_cols=184 Identities=11% Similarity=-0.071 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.++.+++..++..+..+.+..++|.|+.+.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence 5577777777777777788888999999999999999999999999999999999999999986 777766665555555
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+.+.+.+... .....+.... .-.......+.+.++++.++.|++.+...+...+++.+.+|++. |++.+
T Consensus 304 ~~~~l~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~ 372 (1140)
T PRK06814 304 FGLDLAFASS-SVPAEPAQLK----SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVI 372 (1140)
T ss_pred HHHHHHhccc-cccccccccc----chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeee
Confidence 4443333200 0000000000 00000000233456677778899999988889999999999998 99999
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhc-ccchhhHHHHHHH
Q 008953 197 NAAYFAFSTGELVALTVLVWVQT-HSGMDVGFGVSAA 232 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~-~~g~~~~f~~~~~ 232 (547)
+.+++..++|..+++++.+.+.. ..++...|++.++
T Consensus 373 g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 373 AANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999999999998863 4456655554433
No 196
>PRK09848 glucuronide transporter; Provisional
Probab=98.84 E-value=1.6e-08 Score=108.06 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.++...++.++....++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 5566677777777777777666777788888888776666555555667788899999999996 999999999888887
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccc-ccccccc
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQ-SKKLSSY 195 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~ 195 (547)
+.+++.+... .+.+.+++..++.++|.+...+...++.+|..|+++-+. ...++..
T Consensus 307 ~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~ 363 (448)
T PRK09848 307 GYLLFFWVSV-----------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLT 363 (448)
T ss_pred HHHHHHHcCc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHH
Confidence 7776655311 234455666778899999999999999999887653111 0114777
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccch
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGM 223 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~ 223 (547)
++.+++...+|.++++.+.+.+.+..|+
T Consensus 364 ~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 364 YSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8889999999999999999887666555
No 197
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.84 E-value=4.7e-07 Score=96.26 Aligned_cols=161 Identities=18% Similarity=0.107 Sum_probs=111.6
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc--cc--hHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008953 58 NNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF--LG--SFWTMLIFGFVELSGFILLSVQAHLPQLKPP 133 (547)
Q Consensus 58 ~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~--~G--r~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 133 (547)
.....|+++++|+++++...+.+...+- ...-++.|.++|-+ +| ||+-++++.++..++.+.++....
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~------- 81 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA------- 81 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc-------
Confidence 3355678899999999988766655443 35678899999986 33 555555666665555554444321
Q ss_pred CCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHH
Q 008953 134 KCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTV 213 (547)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i 213 (547)
...+.....+..++..+|........-+.+.|...++. .+ |+...+..+....+|.+++..+
T Consensus 82 --------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p-~~---~g~lqS~~~~~~~~G~lv~~~l 143 (433)
T PF03092_consen 82 --------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREP-ES---RGDLQSFVWGVRSVGSLVGSLL 143 (433)
T ss_pred --------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC-ch---hHHHHHHHHHHHHHHHHHHHHh
Confidence 01223334455566778888888888889999876553 22 6777888888899999999999
Q ss_pred HHHhhcccchhhHHHHHHHHHHHHHHHHHHc
Q 008953 214 LVWVQTHSGMDVGFGVSAAAMALGLFGVVSG 244 (547)
Q Consensus 214 ~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~ 244 (547)
.|.+.+..+++..|.+.+.+..+.++..+..
T Consensus 144 ~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 144 SGPLLDSFGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred hhhhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence 9999999999999988766555554443333
No 198
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.83 E-value=8.2e-08 Score=102.04 Aligned_cols=162 Identities=20% Similarity=0.171 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.++.+++..++..+.........+.|.+..+|.+ ...+.+.....+...++.++.++++||+ |+||++..+.++..+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 55667777777777777777777788888778877 4567777788889999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc--ccccccc
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK--QSKKLSS 194 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~--~~~~r~~ 194 (547)
+.++..+... .+.+.+++..++.|++.+...+...++++|..+.++.+ ++ ..+.
T Consensus 303 ~~~~~~~~~~-----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r-~~g~ 358 (428)
T PF13347_consen 303 GFLLLFFLGP-----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRR-REGM 358 (428)
T ss_pred HHHHHHHHHh-----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCC-chHH
Confidence 8888877631 35667888888999999999999999999999865422 11 1466
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchh
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMD 224 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~ 224 (547)
.++.+.+...++..+++.+.+.+.+..|+.
T Consensus 359 ~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 359 YFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 678888889999999999999887665554
No 199
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.82 E-value=8.9e-09 Score=105.40 Aligned_cols=144 Identities=20% Similarity=0.190 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCC-hhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFS-LSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG 117 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~-~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 117 (547)
+|.+....+...+.++....++|.|+.+++|.+ ..+.+.+.+...+...++.++.|+++||+ |+|+...+......+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 286 (352)
T PF07690_consen 208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILG 286 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHH
Confidence 344555555566677778899999999999999 78999999999999999999999999996 9988888777776666
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953 118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197 (547)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 197 (547)
.+.+..... ..+....++..++.|++.+...+...+++.|.+|+++ |++..+
T Consensus 287 ~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g 338 (352)
T PF07690_consen 287 ALGLLLLPF----------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFG 338 (352)
T ss_dssp HHHHCCSHH----------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHH
T ss_pred HHHHHHHHH----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence 666555322 1233445556777889999999999999999999887 999999
Q ss_pred hhhhHHhHhHHHHH
Q 008953 198 AAYFAFSTGELVAL 211 (547)
Q Consensus 198 ~~~~~~~ig~~~~~ 211 (547)
+.+...++|..+||
T Consensus 339 ~~~~~~~~~~~igP 352 (352)
T PF07690_consen 339 LFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
Confidence 99999999999987
No 200
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.82 E-value=3.5e-08 Score=104.41 Aligned_cols=190 Identities=15% Similarity=0.028 Sum_probs=129.1
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
..+.+...+.+.++..+..-.......+.+-++-|++..++.+++........+..+++.++.||+ |||+.++++..+.
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLM 345 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 345566666677776666555555555566667899999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhcc-ccccchhhhcccCCCCCCcccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSG-CVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g-~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
.+..+++.....+... .+.+.....+++.++..+..+ +..|..+-+.+|.+|++. |.
T Consensus 346 ~~~~~~~~~~~~l~~~----------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~ 403 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNS----------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RS 403 (485)
T ss_pred HHHHHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hH
Confidence 8877777765431110 000011112233333322222 235677788899999988 88
Q ss_pred cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCcee
Q 008953 194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYY 248 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~ 248 (547)
.++++......+...+.......+.+..|- +.|++..+...+..+..+...|+.
T Consensus 404 aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 404 AAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 899888777777777776777777777775 455555555555555555444443
No 201
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=3.2e-07 Score=100.46 Aligned_cols=201 Identities=18% Similarity=0.152 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.++.++....+....+.+......+-+.+.++++.++.|++.+.+-++..+..++..+++-|. -|-|.+-++.++.++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence 4455555445554444457778888888899999999999999999999999999999999996 788888899999999
Q ss_pred HHHHHHHhhccCCCCCCCCC-----------CC-----CC------CC------ccc---ccccchhHHHHHHHHHHHHh
Q 008953 117 GFILLSVQAHLPQLKPPKCN-----------MV-----TD------SE------NCE---EAKGFKASIFFLALYLVAIG 165 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~-----------~~-----~~------~~------~~~---~~~~~~~~~~~~~~~l~gig 165 (547)
+.+++++ |.+..+.|+ .. .. +. +.. ..+...+.+++++.++.|+|
T Consensus 175 gsll~al----PHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG 250 (735)
T KOG3626|consen 175 GSLLFAL----PHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG 250 (735)
T ss_pred HHHHHhC----hHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC
Confidence 9999886 433322221 00 00 00 111 11122345788889999999
Q ss_pred ccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhc------------------ccc-hhhH
Q 008953 166 SGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT------------------HSG-MDVG 226 (547)
Q Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~------------------~~g-~~~~ 226 (547)
...+++...+++-|...+++ -...+++.+....+|+++|.++++++.. +.| |+..
T Consensus 251 ~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlG 324 (735)
T KOG3626|consen 251 ATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLG 324 (735)
T ss_pred CCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHH
Confidence 99999999999888777666 6677899999999999999999887632 234 7778
Q ss_pred HHHHHHHHHHHHHHHHHcCcee
Q 008953 227 FGVSAAAMALGLFGVVSGTLYY 248 (547)
Q Consensus 227 f~~~~~~~~~~l~~~~~~~~~~ 248 (547)
|++++.+.++..+.+++..+..
T Consensus 325 FLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 325 FLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHHHHHHHHHHhCcccC
Confidence 8888888777777777655544
No 202
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.79 E-value=2.1e-07 Score=97.80 Aligned_cols=155 Identities=12% Similarity=-0.029 Sum_probs=112.1
Q ss_pred HHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008953 50 IMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQ 129 (547)
Q Consensus 50 ~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~ 129 (547)
..........++.|+++.+|.++.+.+.+.....++..++.++.+++.||+ ++++.+..+.. ..+...++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~----- 290 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQ----- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHH-----
Confidence 344445555677888888999999999999999999999999999999996 99888777643 33333333332
Q ss_pred CCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHH
Q 008953 130 LKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELV 209 (547)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 209 (547)
.+.+...+..++.|++.+...+...+.+.+..|++. .++++.+..+...++|..+
T Consensus 291 --------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~ 345 (393)
T PRK11195 291 --------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLL 345 (393)
T ss_pred --------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHH
Confidence 233445556667888888877777787776544321 1588899999999999999
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008953 210 ALTVLVWVQTHSGMDVGFGVSAAAMALG 237 (547)
Q Consensus 210 ~~~i~~~l~~~~g~~~~f~~~~~~~~~~ 237 (547)
+..+.+.+ ...|-++.+.+.++..++.
T Consensus 346 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 372 (393)
T PRK11195 346 MLGLYSLL-VKLGVPVVAVIVGFGLLVA 372 (393)
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHHHHHH
Confidence 99998866 4578776666655444443
No 203
>PRK11043 putative transporter; Provisional
Probab=98.78 E-value=3.8e-07 Score=95.88 Aligned_cols=157 Identities=10% Similarity=-0.046 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953 40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI 119 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 119 (547)
+...+...+....++....+.|.|++ ++|++..+.++......++..++.++++++.||+ |+|+.+....+...++.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~ 283 (401)
T PRK11043 206 LGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVI 283 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence 33333344444555566677888875 5899999999888888888889999999999996 999987666555555444
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953 120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA 199 (547)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 199 (547)
.+........ .+...+++...+.+++.+...+...+...+..|+ + ++++.+++
T Consensus 284 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~ 336 (401)
T PRK11043 284 AIWLASLLSH--------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQ 336 (401)
T ss_pred HHHHHHHhcc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHH
Confidence 3332211000 2233344555667788888888877777777664 4 78889998
Q ss_pred hhHHhHhHHHHHHHHHHhhcccchhh
Q 008953 200 YFAFSTGELVALTVLVWVQTHSGMDV 225 (547)
Q Consensus 200 ~~~~~ig~~~~~~i~~~l~~~~g~~~ 225 (547)
+.....++.+++.+.+.+.+......
T Consensus 337 ~~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 337 NTLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHHHHHHHHHHccCCChhHH
Confidence 88878888888888888876544333
No 204
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.77 E-value=3.2e-07 Score=91.92 Aligned_cols=167 Identities=13% Similarity=0.001 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+..|.+.+-.-++++.+|.++.|+|.++.+ .|+|..++|..++...+......+..-++++|...+|+......+...+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 446778887888999999999999999974 9999999999999999999999999999999875677777777778888
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
|.+.+.+... .. .+...+++|+|.|+..|...+++.+..++.+ + -++..
T Consensus 287 G~~G~~~~P~-----------------------~~---~~lw~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~LS 335 (395)
T COG2807 287 GLVGLLLAPG-----------------------QL---PILWALLLGLGQGGAFPLALTLILLRSSDAA--I---AAALS 335 (395)
T ss_pred HHHHHHHhhh-----------------------hH---HHHHHHHHhCccchHHHHHHHHHHhhcCChH--H---HHHHH
Confidence 8877776421 12 2233478999999999999999988877543 1 23444
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHH
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMA 235 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~ 235 (547)
+..+-...+=++.||++.|++-|..| |+.++...+...+
T Consensus 336 gmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 336 GMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred HHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 55555667778889999999999887 9877776544433
No 205
>TIGR00898 2A0119 cation transport protein.
Probab=98.75 E-value=8.6e-08 Score=104.04 Aligned_cols=141 Identities=9% Similarity=-0.082 Sum_probs=97.6
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccc
Q 008953 67 EMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEE 146 (547)
Q Consensus 67 ~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (547)
.++.+... ......+....+.+++++++||+ |||+.+.++.++..++.+++....+
T Consensus 352 ~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~-------------------- 407 (505)
T TIGR00898 352 NLGGNIYL---DLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV-------------------- 407 (505)
T ss_pred ccCCChHH---HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC--------------------
Confidence 45555432 23344556677888999999996 9999999988887777766665422
Q ss_pred cccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhH
Q 008953 147 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVG 226 (547)
Q Consensus 147 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~ 226 (547)
.......+..++.+++.+...+...++.+|.+|++. |++++++.+....+|.+++|.+.+ +.+ .++..+
T Consensus 408 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~ 476 (505)
T TIGR00898 408 ---DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLP 476 (505)
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhH
Confidence 111223333344455556666777888999999887 999999999999999999999988 443 456667
Q ss_pred HHHHHHHHHHHHHHHH
Q 008953 227 FGVSAAAMALGLFGVV 242 (547)
Q Consensus 227 f~~~~~~~~~~l~~~~ 242 (547)
+++.++..+++.+..+
T Consensus 477 ~~~~~~~~~~~~~~~~ 492 (505)
T TIGR00898 477 LVLFGGLALLAGILTL 492 (505)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766655555544433
No 206
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.74 E-value=5.1e-07 Score=94.56 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=60.5
Q ss_pred HHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 008953 51 MAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQ 124 (547)
Q Consensus 51 ~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~ 124 (547)
........+.|.|+.+++|+++.+.+.......++..++.++.|++.||+ |||+.+.++.++..++.+++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 217 TVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445667788888999999999999999999999999999999996 99999999988888777776664
No 207
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.73 E-value=4.8e-08 Score=105.30 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=145.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccc--hHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLG--SFWTMLIFGFVE 114 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~G--r~~~~~~~~~~~ 114 (547)
+.++.+++-..+..+.++.-..+++.|.. .++++..+++.++++..+...+++++.|+++|+. . ++....++++..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 66778888888888888888888999987 7999999999999999999999999999999996 6 334444556666
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 115 LSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
.+....+++.+ ++..++..-.+.|+..|.+.+.....+.|..+.++ ...
T Consensus 376 gl~~~~~p~~~-------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~ 424 (509)
T KOG2504|consen 376 GLARLFLPFAT-------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSN 424 (509)
T ss_pred HHHHHHHHHhc-------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cch
Confidence 66666666653 34557777778899899888888888899999887 888
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHcC
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVSGT 245 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~~~ 245 (547)
++++..+...+++.+||.+.|++.+..| |...|+.+++..+++.+..+...
T Consensus 425 a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 425 AYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999999999999888 99999998887777765555443
No 208
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.73 E-value=1.2e-07 Score=98.01 Aligned_cols=145 Identities=16% Similarity=0.121 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHH-HHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 38 AAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFI-GTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~-~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
.++.+.+..++....++....+.+.|+.+ +|+++.+.+.+..... +...++.+++|+++||+ |||+.+..+.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 36666666777788888888999999987 9999999998887665 56789999999999996 999998888877766
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+..+.....+... + .| .+..+...+..+.++.+++.+...+...++..|.+|+++ |++.+
T Consensus 288 ~~~~~~~~~~~~~---------~--~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~ 347 (356)
T TIGR00901 288 TNAGFVWLASNGH---------H--DG---ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQM 347 (356)
T ss_pred HHHHHHHHHhcCc---------c--cc---cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHH
Confidence 6554444321000 0 00 000123456666777899999999999999999999998 99999
Q ss_pred hhhhhHHh
Q 008953 197 NAAYFAFS 204 (547)
Q Consensus 197 ~~~~~~~~ 204 (547)
++++...|
T Consensus 348 g~~~~~~~ 355 (356)
T TIGR00901 348 ALLSSLSA 355 (356)
T ss_pred HHHHHHHh
Confidence 98776554
No 209
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.71 E-value=6.4e-07 Score=93.10 Aligned_cols=150 Identities=14% Similarity=0.057 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|..+..++..++.....+....+.|.++.+++|+++.+.+.+.....++..++.+++|+++||+ |||+.+..+.++..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 194 KRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFI 272 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 3445555555566666666667778888888999999999999999999999999999999996 999999888765444
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
..+.+......+ .....+.++..+.+.+.+...+.....+.|..| +. +++..
T Consensus 273 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~ 324 (377)
T PRK11102 273 MGIWLVVSALLD---------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTAS 324 (377)
T ss_pred HHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHH
Confidence 332222211000 122223333334444444545555566666665 34 67777
Q ss_pred hhhhhH-HhHhHHHHHHHHH
Q 008953 197 NAAYFA-FSTGELVALTVLV 215 (547)
Q Consensus 197 ~~~~~~-~~ig~~~~~~i~~ 215 (547)
+..+.. ..+|..+++.+++
T Consensus 325 ~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 325 SLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 775543 3466677766643
No 210
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.70 E-value=5.9e-08 Score=100.30 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.++.+.+..++.....+.+..+.+.|+++.+|+++.+++.+.....+...++.+++|+++||+ |||+.+..+......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~ 303 (366)
T TIGR00886 225 RHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAM 303 (366)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHH
Confidence 3455666666666667777888999999999999999999999999999999999999999997 999888877766666
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+..++..... +..+...+.+...+.+++.|...+...+..++.+|+ + +++.+
T Consensus 304 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~~ 355 (366)
T TIGR00886 304 GAFLVVLGLV---------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAVS 355 (366)
T ss_pred HHHHHHhcCC---------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccHH
Confidence 6555544311 001333344444555556666666677777887763 4 78889
Q ss_pred hhhhhHHhHh
Q 008953 197 NAAYFAFSTG 206 (547)
Q Consensus 197 ~~~~~~~~ig 206 (547)
++.+...++|
T Consensus 356 g~~~~~~~~g 365 (366)
T TIGR00886 356 GLVGAIGNLG 365 (366)
T ss_pred HHHHHhccCC
Confidence 8887777765
No 211
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.69 E-value=3.3e-07 Score=91.58 Aligned_cols=171 Identities=9% Similarity=-0.036 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhc--C----CChhhHH-------------HHHHHHHHHHHHHHhhhhHHhhc
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEM--H----FSLSNSA-------------NIVTNFIGTVFLLALLGGYLSDS 99 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g----~~~~~~~-------------~i~~~~~~~~~~~~~~~G~laDr 99 (547)
-..+..+.+.+.+.||+++-..+...+... | ..+.+.- .=+.+..+..+-+.++.+++.||
T Consensus 328 tlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iver 407 (528)
T KOG0253|consen 328 TLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVER 407 (528)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHH
Confidence 344555667788999998766554443211 0 1111111 11333455667788999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhccc
Q 008953 100 FLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGAD 179 (547)
Q Consensus 100 ~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~ 179 (547)
+ |||++|..+++++.+..+++....+ ......+++.+|++... .....+.+..|
T Consensus 408 l-GRKkTMal~l~~f~iflfll~~c~~---------------------rn~~tvllf~arafisg----~fqvaYvYtPE 461 (528)
T KOG0253|consen 408 L-GRKKTMALSLILFGIFLFLLTTCKT---------------------RNAYTVLLFTARAFISG----AFQVAYVYTPE 461 (528)
T ss_pred h-cchhHHHHHHHHHHHHHHHHHHhcC---------------------cchhHHHHHHHHHHHhc----hheEEEEecCc
Confidence 5 9999999999999888887776532 11223456667766543 33456788899
Q ss_pred CCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 180 QFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 180 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
.+|.+. |+.+.|....+.-+|+++.|++. ...+. .-..+..+..++.+++.+...+
T Consensus 462 VyPTav------RatgvGtcSsmaRIggI~~p~iA-~~~e~-s~sl~i~vy~~~~ilagIavcf 517 (528)
T KOG0253|consen 462 VYPTAV------RATGVGTCSSMARIGGIFSPVIA-MRAEL-STSLPIFVYGALFILAGIAVCF 517 (528)
T ss_pred ccchhh------hhcchhhhhhHHhhhhhhhhHHH-HHhcc-ceeehHHHHHHHHHHHHHHhee
Confidence 999988 99999999999999999999997 33332 2233444445555555444443
No 212
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.63 E-value=8.6e-07 Score=93.09 Aligned_cols=178 Identities=15% Similarity=0.059 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 118 (547)
++..++..+......-....+.+.|+++.-|.+....+.+.+...+.-...-.+.+++..|+ |.|+++.++.+...+=.
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 33444444555555555567888998764447777778777777788888888999999996 99999999999888877
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA 198 (547)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 198 (547)
.+.+...+ |. ........+...+.|+..+........++.+..|++. |.++.++
T Consensus 288 ~l~a~~~~-~~-------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l 341 (400)
T PF03825_consen 288 LLYAYFSD-PW-------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGL 341 (400)
T ss_pred HHHHHhcC-Cc-------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHH
Confidence 77766522 00 0001112233456788888888888999999999988 8999999
Q ss_pred hhhH-HhHhHHHHHHHHHHhhcccchhh------HHHHHHHHHHHHHHHHHH
Q 008953 199 AYFA-FSTGELVALTVLVWVQTHSGMDV------GFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 199 ~~~~-~~ig~~~~~~i~~~l~~~~g~~~------~f~~~~~~~~~~l~~~~~ 243 (547)
+... ..+|.++|..++|++.+++|-+. .+.++++..++..+.++.
T Consensus 342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 342 YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 8775 57999999999999999877443 344444444444444444
No 213
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.61 E-value=7.2e-07 Score=94.31 Aligned_cols=163 Identities=10% Similarity=0.061 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 38 AAVFVLGLQAFEIMAIAAVGNNLITYVINE-MHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
.++..++..++......++..+++.|+.+. .+.+...++...+.+.....++++++|+++||+ ++||.+.++.+...+
T Consensus 233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~ 311 (410)
T TIGR00885 233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA 311 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence 344445555555555556678899998653 245555556667777788899999999999996 999998888777777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
..++...... .. .....++.+++.++..|...+...+..+++. ..+.
T Consensus 312 ~~ll~~~~~~-------------------------~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s 358 (410)
T TIGR00885 312 LCLGSIFAGG-------------------------HV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGA 358 (410)
T ss_pred HHHHHHHcCC-------------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhH
Confidence 6666665321 11 2445566778888888999999999888654 1223
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhccc------chhhHHHHHHHHHH
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHS------GMDVGFGVSAAAMA 235 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~------g~~~~f~~~~~~~~ 235 (547)
+...++ .+|+++.|.+.|++.|.. +.+..|+++..+.+
T Consensus 359 ~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 359 AGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred HHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 333333 389999999999999954 47788887654433
No 214
>PRK09669 putative symporter YagG; Provisional
Probab=98.61 E-value=6.2e-07 Score=95.80 Aligned_cols=162 Identities=13% Similarity=0.066 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.++.++...++.......... ...|..+...-++...+.+.....+...++.+++++++||+ |||+.+.++.+...+
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 229 SQWRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI 306 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHhh-hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 3344454444444444433223 33444333222233344455566677778889999999996 999999888766554
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCC--ccccccccc
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSN--PKQSKKLSS 194 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~ 194 (547)
......+.. . .+...+++..++.+++.+...+...++++|..+.++ .+++ ..+.
T Consensus 307 ~~~~~~~~~---~--------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r-~~g~ 362 (444)
T PRK09669 307 LSALIFFIP---P--------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRR-LDGL 362 (444)
T ss_pred HHHHHHHhC---c--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcC-cchH
Confidence 433332221 1 344556666778899999999999999999987543 2221 1345
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchh
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMD 224 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~ 224 (547)
.++.+.+...+|.++|+.++|++.+..|+.
T Consensus 363 ~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 363 VFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 567888888999999999999988777763
No 215
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.60 E-value=2.2e-07 Score=100.07 Aligned_cols=165 Identities=13% Similarity=0.008 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.++.++...++.....+......+.|.+..++ +....+.+.....++..++.++.++++||+ |+|+++.++.++..+
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 666667777777777666655555544443333 455566666666678888999999999996 999999988876666
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCC--ccccccccc
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSN--PKQSKKLSS 194 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~ 194 (547)
+.+........+ ..+...+++..++.+++.+...+...++++|..|.++ .+++ ..+.
T Consensus 309 ~~~~~~~~~~~~--------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R-~~G~ 367 (473)
T PRK10429 309 SCGVLLLMGLAA--------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIR-CESI 367 (473)
T ss_pred HHHHHHHHhccC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCcc-chhH
Confidence 655544321000 1234455566667888888888888999999977542 2221 0344
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchh
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMD 224 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~ 224 (547)
.++...+...+|.++++.+.|++.+..|++
T Consensus 368 ~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~ 397 (473)
T PRK10429 368 AYSVQTMVVKGGSAFAAFFIGVVLGLIGYV 397 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 677888888999999999999987766663
No 216
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.53 E-value=3.9e-06 Score=87.92 Aligned_cols=139 Identities=11% Similarity=0.015 Sum_probs=96.0
Q ss_pred HHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 008953 57 GNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCN 136 (547)
Q Consensus 57 ~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 136 (547)
....+.|+.+.+|.++.+.++.......+..++.++.+++.||+ +++... ......++.+.........
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~-------- 295 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG-------- 295 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc--------
Confidence 34567788888999999999988888888888889999999996 743332 2222222222211110000
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHH
Q 008953 137 MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVW 216 (547)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~ 216 (547)
..+...+++..++.++|.+...|...+...|.+|+ + +++..++.+...++|..+++.++++
T Consensus 296 ------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~~ 356 (394)
T PRK11652 296 ------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSAM 356 (394)
T ss_pred ------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 02334456667778888888888888888888874 3 6778888888889999999999998
Q ss_pred hhcccchhh
Q 008953 217 VQTHSGMDV 225 (547)
Q Consensus 217 l~~~~g~~~ 225 (547)
+.....+..
T Consensus 357 ~~~~~~~~~ 365 (394)
T PRK11652 357 LPQTGQFSL 365 (394)
T ss_pred ccCCchHHH
Confidence 876644443
No 217
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.52 E-value=1.1e-06 Score=91.50 Aligned_cols=173 Identities=10% Similarity=0.042 Sum_probs=133.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC---CChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMH---FSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF 112 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 112 (547)
.|++|.+.+........|+..-.-.+.|.+..++ .++...|...+...+.-++.-.+..++-+|+ |.|+.++++.+
T Consensus 219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~ 297 (412)
T PF01306_consen 219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV 297 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence 4778877776666666666665667888875443 3445578888888889999999999999996 99999999998
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953 113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL 192 (547)
Q Consensus 113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 192 (547)
...+=-+++++++ +++.+.+...+.++-.+..-..+.-++++.+|++- .
T Consensus 298 i~~iRi~~~~~~~-------------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------s 346 (412)
T PF01306_consen 298 IMAIRIIGSGFAT-------------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------S 346 (412)
T ss_dssp HHHHHHHHHHT---------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------H
T ss_pred HHHHHHHHHhhhc-------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------H
Confidence 8888878888874 45668888999988888888888899999999765 5
Q ss_pred ccchhh-hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008953 193 SSYFNA-AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 193 ~~~~~~-~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~ 240 (547)
.+.+.+ +..+..+|..+.+.+.|++.++.|.+..|++.+..+++..+.
T Consensus 347 At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li 395 (412)
T PF01306_consen 347 ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLI 395 (412)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHH
Confidence 667776 467789999999999999999999998888766555544433
No 218
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.45 E-value=2.2e-06 Score=90.17 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.+.+++...++...+.....+...-|.+-.+|.++.+..........+..++.++..++++|+ |+|+++.++.++..+
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i 314 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV 314 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence 4455556666666666665566667777777888888888888888888888899999999996 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCC--ccccccccc
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSN--PKQSKKLSS 194 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~ 194 (547)
+.+++.+... ++...+++..++.++|.+...+..+++++|..+.++ +++|. -|-
T Consensus 315 ~~~~~~f~~~-----------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~-eGi 370 (467)
T COG2211 315 GYLLLYFTPA-----------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRR-EGI 370 (467)
T ss_pred HHHHHHhhcC-----------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCc-hhh
Confidence 9999888632 566778888889999999999999999999987543 33321 234
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhcccchh
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQTHSGMD 224 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~ 224 (547)
.++.+.+..=+|.+++..+.|++....|+.
T Consensus 371 ~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv 400 (467)
T COG2211 371 VYSGMTFFRKLGLALAGFIPGWILGAIGYV 400 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456666666778888888888876655543
No 219
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.40 E-value=1e-05 Score=78.81 Aligned_cols=180 Identities=13% Similarity=0.075 Sum_probs=115.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
|-.+...++++.+.. +.|.... ..+.+++.+|+|.+|...+.....++..++ ++.|.+.|++ |.+.++.++.+...
T Consensus 2 W~~l~a~~~v~~~~G-t~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~ 77 (250)
T PF06813_consen 2 WLSLVASIWVQLCSG-TTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGF 77 (250)
T ss_pred hhhHHHHHHHHHhcC-cccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHH
Confidence 344444445554443 4444433 445678899999999999999999998874 8899999997 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
+|..++..+.+-. ....+.+.+++..++.+.+.+...........+.||+ + ||++
T Consensus 78 ~GY~~~~l~~~~~------------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~v 132 (250)
T PF06813_consen 78 VGYGLLWLAVSGR------------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTV 132 (250)
T ss_pred HHHHHHHHHHhCc------------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCce
Confidence 9998888774311 1113455666655566665555444444445678985 4 8899
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHc
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSG 244 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~ 244 (547)
.++.-....+++++=..+...+...-.-...+++.....+++++...+.
T Consensus 133 vgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~v 181 (250)
T PF06813_consen 133 VGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFV 181 (250)
T ss_pred ehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhe
Confidence 9887666666665544444444333223333334444444444444443
No 220
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.37 E-value=1.2e-05 Score=85.02 Aligned_cols=170 Identities=14% Similarity=0.076 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.++...+..++.....+....+.|.|+++.+|++..+.++......++..++..+.+.+.++. +++|.+.....+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence 5677777777777777777778889999998999999999998888888888777777766543 444444333333344
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+..++....... ..+....+++.++.++|.+...|+..+..- .+.+.+ +++..
T Consensus 297 g~~l~~~~~~~~--------------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~ 349 (413)
T PRK15403 297 GLALLIVGNLLW--------------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVS 349 (413)
T ss_pred HHHHHHHHHHHc--------------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHH
Confidence 444333321000 012223456677788888887777764332 222211 56677
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 008953 197 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMA 235 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~ 235 (547)
++++.....+..+++...+++..+ +-+++|....+...
T Consensus 350 a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 350 ASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 777777777888888888888765 55566665444333
No 221
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.34 E-value=1.8e-05 Score=80.71 Aligned_cols=156 Identities=11% Similarity=0.145 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH
Q 008953 38 AAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG 117 (547)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 117 (547)
.++.-.+..|+---.--+..++++.|+.+..|++..++...++.+..+..+++.++-++-.|+ -..|.+....+...+.
T Consensus 237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill 315 (422)
T COG0738 237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILL 315 (422)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 334444444444344444558899999988999999999999999999999999999998896 8888777766554444
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953 118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197 (547)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 197 (547)
.+..++.. +. .-+.+.++.|+..+...|++.+...+..|++. +.-+
T Consensus 316 ~~~~~l~~-------------------------g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s 361 (422)
T COG0738 316 LLAVALIG-------------------------GV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGS 361 (422)
T ss_pred HHHHHHhc-------------------------Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------cccc
Confidence 44444432 11 23344567889999999999999999999443 2222
Q ss_pred hhhhHHhHhHHHHHHHHHHhhcccchhhHHH
Q 008953 198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFG 228 (547)
Q Consensus 198 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~ 228 (547)
..-...-+|+++.|.+.|++.|..|-...+.
T Consensus 362 ~~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 362 GLLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred eeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 2233445689999999999999999776665
No 222
>PRK11462 putative transporter; Provisional
Probab=98.32 E-value=2.1e-05 Score=84.55 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 118 (547)
++.++...++..............|.+..+|. +...+.+...+.+...++.+++++++||+ |+|+.+..+.....+..
T Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~ 307 (460)
T PRK11462 230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVIS 307 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 33333333444343333333333333333443 33345667777788888999999999996 99998776555444433
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCC--ccccccc-ccc
Q 008953 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSN--PKQSKKL-SSY 195 (547)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~--~~~~~~r-~~~ 195 (547)
++..+... .+...+++..++.|++.+...+...++.+|..+.++ .+++ | +..
T Consensus 308 ~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r--~~g~~ 362 (460)
T PRK11462 308 LAMFFVPM-----------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKR--LTGIS 362 (460)
T ss_pred HHHHHhch-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCC--chHHH
Confidence 33322211 122223344455677777777777788888877432 2221 2 333
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccch
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGM 223 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~ 223 (547)
++...+...+|.++++.++|++.+..|+
T Consensus 363 ~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 363 FAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5666677889999999998887665555
No 223
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.26 E-value=3.7e-05 Score=80.80 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=84.2
Q ss_pred ccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHH
Q 008953 385 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ 464 (547)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 464 (547)
....+-.+-+++-++..++ .+|+++ .+.+..|+.+.++-++.+... .++|..++.
T Consensus 411 ~~a~~~~gEI~~~ffs~kl----I~kiGH-------v~v~~lgLa~~~~Rf~~~S~L--------------~n~W~vLPi 465 (618)
T KOG3762|consen 411 VSALCHAGEILFYFFSFKL----IEKIGH-------VNVMYLGLACNVGRFLYYSYL--------------QNPWMVLPI 465 (618)
T ss_pred hhhhhccchHHHHHHHHHH----HHHhcc-------cceeeehhhHHHHHHHHHHHh--------------cCchheeeH
Confidence 3344444444444444444 345443 245778999999999888886 388888999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 008953 465 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYC-SYSFGFYLSSLLVSFVNKV 520 (547)
Q Consensus 465 ~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~-~~~~G~~lg~~i~~~l~~~ 520 (547)
-++.|+..+++.....+|+...+|++.|++++++... .-++|..+|++|.+.+...
T Consensus 466 eilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~ 522 (618)
T KOG3762|consen 466 EILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER 522 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence 9999999999999999999999999999999999886 4577777777777766543
No 224
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.25 E-value=1.4e-05 Score=76.63 Aligned_cols=153 Identities=15% Similarity=0.180 Sum_probs=91.5
Q ss_pred HHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 008953 62 TYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDS 141 (547)
Q Consensus 62 ~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (547)
-|+.+.+|+...|.+....+......+...+.|-++||- |||+. ++.+.+..+++-+..+
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKra----cvtycitYiLsCiTKh--------------- 120 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRA----CVTYCITYILSCITKH--------------- 120 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccc----eeeehHHHHHHHHhhc---------------
Confidence 456678899999999998888888889999999999996 99994 3444455555555432
Q ss_pred CcccccccchhHHHHHHHHHHHHhccccccchhhh-cccCCCCCCcccccccccchhh-hhhHHhHhHHHHHHHHHHhhc
Q 008953 142 ENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAH-GADQFDQSNPKQSKKLSSYFNA-AYFAFSTGELVALTVLVWVQT 219 (547)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~~~~~i~~~l~~ 219 (547)
.+++-.++++|++-|+..+...+..-+. ++|.-+++.-. ++=..--++- ..+...+=++++.+.+..+.+
T Consensus 121 -------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe-qqWls~TFskA~ffgNglvAiiaGlfgn~lvd 192 (454)
T KOG4332|consen 121 -------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE-QQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVD 192 (454)
T ss_pred -------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh-HhhhhHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 1334458899999999888776666544 35544322200 0001111111 111222334444444555665
Q ss_pred ccc--hhhHHHHHHHHHHHHHHHHH
Q 008953 220 HSG--MDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 220 ~~g--~~~~f~~~~~~~~~~l~~~~ 242 (547)
+++ ...+|-..+....++....+
T Consensus 193 ~~slGPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 193 TFSLGPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred HhccCCCCchHHHHHHHHHHHHHHH
Confidence 544 55667766555555544443
No 225
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.20 E-value=0.001 Score=69.23 Aligned_cols=157 Identities=11% Similarity=0.035 Sum_probs=101.8
Q ss_pred hHHHHHHHhhhh-cCCChhhHH-HHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008953 56 VGNNLITYVINE-MHFSLSNSA-NIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPP 133 (547)
Q Consensus 56 ~~~~l~~yl~~~-lg~~~~~~~-~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 133 (547)
.-+++..|+.+. .|++..|.. -+.-...-......++...+.|.. |.|++++++.+...+.-.++....+
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~s------- 93 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGTS------- 93 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHCc-------
Confidence 347889999987 899998864 444444556667778899999985 9999999988887777777666533
Q ss_pred CCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHH
Q 008953 134 KCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTV 213 (547)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i 213 (547)
...+-+.-++.|+..+.. ....+++=...|+++ -.++.+....+.-+|-.++.++
T Consensus 94 ------------------v~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~l 148 (412)
T PF01770_consen 94 ------------------VLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLL 148 (412)
T ss_pred ------------------HHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666655542 233344444445544 4455666666666677777666
Q ss_pred HHHhhc--ccchhhHHHHHHHHHHHHHHHHHHcC
Q 008953 214 LVWVQT--HSGMDVGFGVSAAAMALGLFGVVSGT 245 (547)
Q Consensus 214 ~~~l~~--~~g~~~~f~~~~~~~~~~l~~~~~~~ 245 (547)
+-.+.. ...+....++......+++++.++..
T Consensus 149 gQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 149 GQLLVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 544443 23356666677666666766655543
No 226
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.20 E-value=4.9e-06 Score=85.72 Aligned_cols=167 Identities=16% Similarity=0.118 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHHHHHHHHH-
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFWTMLIFGF- 112 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~~~~~- 112 (547)
+.++.+..+.+...+.+-.=..++++|+++ +|.+..-.+.+-.+.-+...+.+|+.|..+||+ +||||.++....
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 677777888888888887778899999974 999998889998999999999999999999986 688888776544
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953 113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL 192 (547)
Q Consensus 113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 192 (547)
..+++.+++..+.++...+.++.+ ..........++++.-+.=+.+...+...-++.+|..-.++.++ |
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~--------~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~---~ 179 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNER--------KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT---R 179 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcc--------cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh---c
Confidence 566788888888776665543332 01222334556666666677777778888899999987665221 3
Q ss_pred ccchhhhhhHHhHhHHHHHHHHHHh
Q 008953 193 SSYFNAAYFAFSTGELVALTVLVWV 217 (547)
Q Consensus 193 ~~~~~~~~~~~~ig~~~~~~i~~~l 217 (547)
+.+++...+.+|..+|...+++.
T Consensus 180 --Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 180 --ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred --cchhHHHHHHhcceeeeeccccc
Confidence 78888888999999888877644
No 227
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.17 E-value=2.7e-05 Score=83.96 Aligned_cols=180 Identities=11% Similarity=-0.001 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhh----HHHHHHHHHHHHHHHHhhhh----HHhhcccchHHH--HHHHH
Q 008953 42 VLGLQAFEIMAIAAVGNNLITYVINEMHFSLSN----SANIVTNFIGTVFLLALLGG----YLSDSFLGSFWT--MLIFG 111 (547)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~----~~~i~~~~~~~~~~~~~~~G----~laDr~~Gr~~~--~~~~~ 111 (547)
+++...+....+.-..+.++.|..+..+.+... .+++.+.-.+...+..++.. ++.||-.+.+.. +.+|.
T Consensus 277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~ 356 (475)
T TIGR00924 277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGM 356 (475)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 333333444444444555777776655543222 45555555555555555433 455542133333 36777
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953 112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK 191 (547)
Q Consensus 112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 191 (547)
++..++.+.++++..... .....+++.+.+..++.++|.....|...+++.+..|++.
T Consensus 357 ~l~~~~~~~~~~~~~~~~----------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------ 414 (475)
T TIGR00924 357 LFCGASFLTFAASIWFAD----------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------ 414 (475)
T ss_pred HHHHHHHHHHHHHHhhcC----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------
Confidence 777777777665321000 0012466778888999999999999999999999999887
Q ss_pred cccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
|+++++++.....+|..+++.+.....+..+|...|...++.+++..+.++.
T Consensus 415 ~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 415 MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777667877776655554444444433
No 228
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.15 E-value=5.4e-05 Score=74.42 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=106.6
Q ss_pred HHHHHHhhhhcCCCh--hhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008953 58 NNLITYVINEMHFSL--SNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKC 135 (547)
Q Consensus 58 ~~l~~yl~~~lg~~~--~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 135 (547)
...+.+. .+++.+. ...+++.+.+.+...++.++.|.++||+ |||+.+..+.....++.+++.+..+
T Consensus 23 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (338)
T COG0477 23 PALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--------- 91 (338)
T ss_pred HHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence 3344444 3455554 4788999999999999999999999997 9998888887765555555555421
Q ss_pred CCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC-CCcccccccccchhhhhh-HHhHhHHHHHHH
Q 008953 136 NMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ-SNPKQSKKLSSYFNAAYF-AFSTGELVALTV 213 (547)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~ig~~~~~~i 213 (547)
.....+.+.|+..|++.+...+...+++.|.+|+ +. |+...+.... ...+|..++|.+
T Consensus 92 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T COG0477 92 --------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLL 151 (338)
T ss_pred --------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356688888889999998899999999999997 33 7777887777 577888888877
Q ss_pred HHHhhcc--cchhhHHHHHHH
Q 008953 214 LVWVQTH--SGMDVGFGVSAA 232 (547)
Q Consensus 214 ~~~l~~~--~g~~~~f~~~~~ 232 (547)
++.+... .+|+..|.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~ 172 (338)
T COG0477 152 AGLLLGALLWGWRAAFLLAAL 172 (338)
T ss_pred HHHHHHHHhcchHHHHHHHHH
Confidence 7766554 468885555443
No 229
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.14 E-value=2.3e-08 Score=106.85 Aligned_cols=182 Identities=16% Similarity=0.018 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.....+....+..+..+....+..+++.+..+.++. -.......+...++.+++.++.||+ |||+.++.+.++..+
T Consensus 252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~ 328 (451)
T PF00083_consen 252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI 328 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence 4455555555566555554555555556666777666 2233344455667778888999996 999999998887777
Q ss_pred HHHHHH-HhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 117 GFILLS-VQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 117 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
..+.+. ....... . .+..+...+............+..+....+.+|.||.+. |.++
T Consensus 329 ~~~~~~~~~~~~~~----------~------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~ 386 (451)
T PF00083_consen 329 CSLILGIIFFLGVS----------S------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTG 386 (451)
T ss_pred cccccccccccccc----------c------ccccccccceeeeeccccccccccccccccccccccccc------cccc
Confidence 666654 1100000 0 000011111111111112222344566688899999998 9999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
.++.+....+++++++.+..++.+..+-...|.+.++..++..+..+.
T Consensus 387 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~ 434 (451)
T PF00083_consen 387 IGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF 434 (451)
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence 999999889999999988888887766233455444444444444433
No 230
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.12 E-value=6.5e-06 Score=88.24 Aligned_cols=164 Identities=15% Similarity=0.042 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcc---cchHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSF---LGSFWTMLIFGFV 113 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~~~~~~ 113 (547)
..+|..++..++.....|++..|+|.|+++..|++..+++.+...+.++..++.+++|+++||. ..+|........+
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4578999999999999999999999999987789999999999999999999999999999993 2666666655554
Q ss_pred HH-HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953 114 EL-SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL 192 (547)
Q Consensus 114 ~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 192 (547)
.. ++.+.+..... ......+.+....+.....+.......+....+. + |
T Consensus 353 ~~~~g~~~l~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-k----~ 402 (495)
T KOG2533|consen 353 YAIIGAISLLAAAV-------------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-K----A 402 (495)
T ss_pred HHHHHHHHHHhhcc-------------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH-H----h
Confidence 44 34344433211 1112222222223333333344444444443332 1 3
Q ss_pred ccchhhhhhHH-hHhHHHHHHHHHHhhcccchhhHHHHH
Q 008953 193 SSYFNAAYFAF-STGELVALTVLVWVQTHSGMDVGFGVS 230 (547)
Q Consensus 193 ~~~~~~~~~~~-~ig~~~~~~i~~~l~~~~g~~~~f~~~ 230 (547)
-+..+.+..+. ..|.+.+++..+.....++|...|+..
T Consensus 403 ~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 403 LTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred HHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 34444444444 344455555555566667888888543
No 231
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00079 Score=71.09 Aligned_cols=103 Identities=7% Similarity=0.046 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHH
Q 008953 79 VTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLA 158 (547)
Q Consensus 79 ~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (547)
..+......+.+++++-+-|+. |.|..+.++...+...-+.... .|...++.+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~--------------------------~N~y~~yfs 108 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF--------------------------PNSYYLYFS 108 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh--------------------------cchHHHHHH
Confidence 5666777888999999999996 9999999998887765555544 345668888
Q ss_pred HHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH
Q 008953 159 LYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL 214 (547)
Q Consensus 159 ~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~ 214 (547)
-++.|+|.+..+.....++.+..+++. +++-.++.......+.++|..+.
T Consensus 109 sallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 109 SALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred HHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence 999999999999999999999888776 77777777666676766665553
No 232
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.10 E-value=2.2e-05 Score=61.95 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953 41 FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 113 (547)
.+-...++...+...+.++++.|+.+ .|+|..+.|.+.++..+...++++++|+++||+ ||+|.++....+
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 34455666667777788999999985 999999999999999999999999999999997 988877766543
No 233
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.09 E-value=0.00012 Score=75.23 Aligned_cols=164 Identities=16% Similarity=0.141 Sum_probs=127.9
Q ss_pred HHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008953 50 IMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQ 129 (547)
Q Consensus 50 ~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~ 129 (547)
.+++++--..+=+|--+.+|++..|....+.....+..++-.+.|++..|-.+++++-.+++....+++.+..++...
T Consensus 221 t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~-- 298 (403)
T PF03209_consen 221 TLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL-- 298 (403)
T ss_pred HHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 334443346677888899999999999999999999999999999998865699999989999888888877776431
Q ss_pred CCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHH
Q 008953 130 LKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELV 209 (547)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 209 (547)
.+.+.+..+.+++|++.|.+....-+...|...+++ -+..++.+..+..++..+
T Consensus 299 --------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Gl 352 (403)
T PF03209_consen 299 --------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGL 352 (403)
T ss_pred --------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHH
Confidence 345678889999999999998888888899988776 678888888888888888
Q ss_pred HHHHHHHhhcc----------cchhhHHHHHHHHHHHHHHHH
Q 008953 210 ALTVLVWVQTH----------SGMDVGFGVSAAAMALGLFGV 241 (547)
Q Consensus 210 ~~~i~~~l~~~----------~g~~~~f~~~~~~~~~~l~~~ 241 (547)
+-.++|.+.|- .+|...|.+-++.+++++...
T Consensus 353 g~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 353 GTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 88887765432 235566666666555555444
No 234
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.04 E-value=4.9e-05 Score=81.29 Aligned_cols=208 Identities=8% Similarity=-0.121 Sum_probs=139.3
Q ss_pred CCcCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-cCCChh------h----HHHHHHHHHHHHHHHHhhhhHHhh
Q 008953 30 PNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINE-MHFSLS------N----SANIVTNFIGTVFLLALLGGYLSD 98 (547)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~~~~------~----~~~i~~~~~~~~~~~~~~~G~laD 98 (547)
+..+..|+.++.+++++++.=++.+.+..+.+.|+.++ +|-++. + ..+....+.+...+.+++--++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567789999999999999999999999999998754 443321 1 123334444455566677788898
Q ss_pred cccch-HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccc-ccccchhHHHHHHHHHHHHhccccccchhhh
Q 008953 99 SFLGS-FWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCE-EAKGFKASIFFLALYLVAIGSGCVKPNMIAH 176 (547)
Q Consensus 99 r~~Gr-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~ 176 (547)
|+ |+ |++..++.++..++.+...+..+.+.-. -.+++++.. .+........++...+.|+..+.......++
T Consensus 331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal 404 (477)
T TIGR01301 331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNS-----RYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFAL 404 (477)
T ss_pred Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhcc-----ccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHH
Confidence 86 95 6666788778777777776543211000 001111111 1111113445556667888888888888999
Q ss_pred cccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccc--hhhHHHHHHHHHHHHHHHHHHcCce
Q 008953 177 GADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG--MDVGFGVSAAAMALGLFGVVSGTLY 247 (547)
Q Consensus 177 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g--~~~~f~~~~~~~~~~l~~~~~~~~~ 247 (547)
+++..++++.+ .|..+|+++.++.+...+..+..|.+.+..| -.+.+.+.++.++++.+..+...|+
T Consensus 405 ~s~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 405 ASIRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 99998854311 6888999999999999999888887666555 4567778888877777666654443
No 235
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.01 E-value=0.00011 Score=63.84 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=81.6
Q ss_pred cchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHH
Q 008953 388 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI 467 (547)
Q Consensus 388 ~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 467 (547)
...++.++..++.+++.+ |.+ +++.+..+..+..++.+..... .+.+.+.+..++
T Consensus 6 ~~~~~~~~~~~~~g~~~d----~~g-------~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 60 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTD----RFG-------RKPVLLVGLFIFVLSTAMFALS--------------SNITVLIIARFL 60 (141)
T ss_pred eehhHHHHHHhhHHHHHh----hcc-------hhHHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHH
Confidence 334555666666666544 432 2244666767776666655543 255666777889
Q ss_pred HHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 468 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 519 (547)
Q Consensus 468 ~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~ 519 (547)
.+++.+...+....+..|..|++.|++..++.+....+|..+++.+.+.+.+
T Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 9999999999999999999999999999999999999999999999998765
No 236
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=6.8e-06 Score=83.31 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHH--
Q 008953 40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSG-- 117 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~-- 117 (547)
++....-.+.+...-..-+-++.++.+.+..+..+.+++..-..+...++..+.|.++||+ +.-+.+.....+.++|
T Consensus 273 ~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~ 351 (464)
T KOG3764|consen 273 LLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVS 351 (464)
T ss_pred hhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHH
Confidence 3333333344444444557788888888886666999999999999999999999999997 9444444333333333
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953 118 FILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197 (547)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 197 (547)
.....++ .++..+.+-+...+++.+...+..........+.++...-...++.++
T Consensus 352 ~~~iP~~-------------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVya 406 (464)
T KOG3764|consen 352 SGPIPFA-------------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYA 406 (464)
T ss_pred hchhHhh-------------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHH
Confidence 3333333 345557777777888888877777777777777655332224788888
Q ss_pred hhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 008953 198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMAL 236 (547)
Q Consensus 198 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~ 236 (547)
+...+..+|.++||.++|.+.+..|++|.-.+.+...++
T Consensus 407 Iad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i 445 (464)
T KOG3764|consen 407 IADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI 445 (464)
T ss_pred HHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence 999999999999999999999999988876655554443
No 237
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.95 E-value=1.7e-05 Score=83.22 Aligned_cols=173 Identities=12% Similarity=-0.004 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 008953 43 LGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLS 122 (547)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~ 122 (547)
+++.++..+..-.+.+++--|+ ++++-.+.--|.+...-..+-.+..++.++|-.|+ |+-+++..++..+.+=++..+
T Consensus 377 f~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S 454 (618)
T KOG3762|consen 377 FFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYS 454 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHH
Confidence 3344444444444555555555 45666666666666666777888889999999997 999999999999888877777
Q ss_pred HhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhH
Q 008953 123 VQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA 202 (547)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 202 (547)
.. .|+|+.+..-+++|+-.+.++..+.+++.+..|++- |.++.++....
T Consensus 455 ~L-------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~ 503 (618)
T KOG3762|consen 455 YL-------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGI 503 (618)
T ss_pred Hh-------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHH
Confidence 76 566778888899999999999999999999999887 77888886665
Q ss_pred H-hHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCcee
Q 008953 203 F-STGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYY 248 (547)
Q Consensus 203 ~-~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~ 248 (547)
. .+|-.+|.+++|.+.+.+|-+..|.++++..++.++.+.......
T Consensus 504 f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 504 FHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL 550 (618)
T ss_pred hcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4 788899999999999999999999988887777776666554433
No 238
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.94 E-value=0.025 Score=58.91 Aligned_cols=63 Identities=19% Similarity=0.095 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 457 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 519 (547)
Q Consensus 457 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~ 519 (547)
+.|.+++..+..|+..|...+.....+.|..|+++|..++|......++|-.++..+.-++.+
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 566666677788888888888888888999999999999999999999998888887765544
No 239
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.91 E-value=0.00018 Score=78.14 Aligned_cols=147 Identities=12% Similarity=0.014 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhHHHHHHHhhh--hcCCCh------hhHHHHHHHHHHHHHHHHhhh----hHHhhcccchHHHHHHHHHH
Q 008953 46 QAFEIMAIAAVGNNLITYVIN--EMHFSL------SNSANIVTNFIGTVFLLALLG----GYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 46 ~~~~~~~~~~~~~~l~~yl~~--~lg~~~------~~~~~i~~~~~~~~~~~~~~~----G~laDr~~Gr~~~~~~~~~~ 113 (547)
.+.....+|.+....+.++.. ..+.+. ...+++.+.-.+...+..++. +++.||+ +..+.+.++.++
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l 359 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence 335555666666666666542 111111 113444444444444444444 6667775 777888899999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
.+++.+.++...+... ....-+.+.+.+..+++++|..+..|...+++.+..|++. |+
T Consensus 360 ~~l~f~~l~~~~~~~~----------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg 417 (500)
T PRK09584 360 CSGAFLVLPLGAKFAN----------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MG 417 (500)
T ss_pred HHHHHHHHHHHHHhcC----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HH
Confidence 9999888877643111 0011234467788899999999999999999999999888 99
Q ss_pred cchhhhhhHHhHhHHHHHHHHH
Q 008953 194 SYFNAAYFAFSTGELVALTVLV 215 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~~~~i~~ 215 (547)
+.++.+..+..+|..++..+.+
T Consensus 418 ~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 418 FIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888777777777666654
No 240
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.87 E-value=0.014 Score=62.33 Aligned_cols=166 Identities=8% Similarity=0.039 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCC-----ChhhHHHHHHHHHHHHHHH-HhhhhHHhhcccchHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHF-----SLSNSANIVTNFIGTVFLL-ALLGGYLSDSFLGSFWTMLI 109 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~-----~~~~~~~i~~~~~~~~~~~-~~~~G~laDr~~Gr~~~~~~ 109 (547)
.++++...+..+|-.+.|+.+.+ +.+.+.. +.....++.+...+...+. .++-+++++|+ +|++.+.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 35667777777777777776553 4555555 3345666666555554444 78899999997 99999988
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCCCCCCCCCCCC--Cccc--------ccccchhHHHHHHHHHHHHhcccccc-chhhhc
Q 008953 110 FGFVELSGFILLSVQAH-LPQLKPPKCNMVTDS--ENCE--------EAKGFKASIFFLALYLVAIGSGCVKP-NMIAHG 177 (547)
Q Consensus 110 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~l~gig~g~~~~-~~~~~~ 177 (547)
....+.....+.++.-. .+....|+.. -+. ...+ ..+.+....+++. ..+-.....+ ..+++.
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~--~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~---~elw~~~vvS~lFW~fa 154 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPTAL--ADKLLSLLPPGFMGFIAILRIWSFALFYVM---AELWGSVVLSLLFWGFA 154 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCcHH--HHHHHhhcchhhHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 77777776666665521 0111001000 000 0000 0011222233332 2233333344 678999
Q ss_pred ccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhh
Q 008953 178 ADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ 218 (547)
Q Consensus 178 ~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~ 218 (547)
.|.+..++ -.|.++++..+.|+|..+++.+..++.
T Consensus 155 ndi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 155 NQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 567899999999999999999988876
No 241
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.86 E-value=0.00013 Score=78.85 Aligned_cols=146 Identities=13% Similarity=0.067 Sum_probs=97.4
Q ss_pred HHHHHHhhHHHHHHHhhhhcCCChh----hHHHHHHHHHHHHHHHHhhhhHHhhcccchHH-------HHHHHHHHHHHH
Q 008953 49 EIMAIAAVGNNLITYVINEMHFSLS----NSANIVTNFIGTVFLLALLGGYLSDSFLGSFW-------TMLIFGFVELSG 117 (547)
Q Consensus 49 ~~~~~~~~~~~l~~yl~~~lg~~~~----~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~-------~~~~~~~~~~i~ 117 (547)
....+......++.|.++..+.+.. ...++.+...+...+..++.|++.||+ |+|+ .+.+|.++..++
T Consensus 281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~ 359 (489)
T PRK10207 281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLG 359 (489)
T ss_pred HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHH
Confidence 3344444446677777643332110 223444444455667788889999996 9987 366777776666
Q ss_pred HHHHHHhhc-cCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 118 FILLSVQAH-LPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 118 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
.+.++.... ... .....+.+.+....++.++|.++..|...+.+.+..|++. ++.++
T Consensus 360 ~~~~~~~~~~~~~----------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~ 417 (489)
T PRK10207 360 FLTAAAAGMWFAD----------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFIL 417 (489)
T ss_pred HHHHHHHHHhhcC----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHH
Confidence 654432110 000 0011234556677888999999999999999999999887 88899
Q ss_pred hhhhhHHhHhHHHHHHHHHHh
Q 008953 197 NAAYFAFSTGELVALTVLVWV 217 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l 217 (547)
++++...++|..++..++...
T Consensus 418 g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 418 GMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998887655
No 242
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.84 E-value=0.0064 Score=61.72 Aligned_cols=158 Identities=13% Similarity=0.105 Sum_probs=92.9
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhh-----cccchHHH
Q 008953 32 KHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSD-----SFLGSFWT 106 (547)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laD-----r~~Gr~~~ 106 (547)
.|+..+++..+++....+..-+ ++...+| ++-+.-|.|-++.+....++. =+..-+++..+.| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP-~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIP-LLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCch-hHhhhhH-HHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 5667788998988888876655 4545455 444456777766665544432 2345567777888 85 99997
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCc
Q 008953 107 MLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNP 186 (547)
Q Consensus 107 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~ 186 (547)
-++- .-+.+|.++..++...+..+.. ....++........+++-+.++..--.+....-.+..+++
T Consensus 101 Wvvp-~q~llG~~mllLs~~v~~~~g~------------ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~- 166 (510)
T KOG3574|consen 101 WVVP-CQYLLGLFMLLLSYLVDRGLGG------------NGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN- 166 (510)
T ss_pred eeee-hHHHHHHHHHHHhhCCCccccc------------CCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh-
Confidence 6543 2344566666666544332211 1122333333334455556666655566666667777666
Q ss_pred ccccccccchhhhhhHHhHhHHHHHHH
Q 008953 187 KQSKKLSSYFNAAYFAFSTGELVALTV 213 (547)
Q Consensus 187 ~~~~~r~~~~~~~~~~~~ig~~~~~~i 213 (547)
.+-+......+.+.|.+++..+
T Consensus 167 -----lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 167 -----LGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred -----cCchhHHHHHHHhhhHHhhcce
Confidence 5555555555666666666544
No 243
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.81 E-value=5.1e-05 Score=81.66 Aligned_cols=136 Identities=9% Similarity=-0.177 Sum_probs=104.4
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcc
Q 008953 65 INEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENC 144 (547)
Q Consensus 65 ~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (547)
++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++..++.........-..+ +.|
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~-------~~g---- 347 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNL-------AFG---- 347 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccc-------ccC----
Confidence 457999999999999999999999999999999996 99999999988888776554322110000 000
Q ss_pred cccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccc
Q 008953 145 EEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG 222 (547)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g 222 (547)
+ +....+...-++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.++.|
T Consensus 348 -i---~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 348 -I---SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred -C---CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0 111123344556677777777777899999999988 8999999999999999999999999988877
No 244
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.77 E-value=0.00039 Score=75.81 Aligned_cols=186 Identities=15% Similarity=0.017 Sum_probs=102.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953 34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 113 (547)
..+|.....+.+..+..++.+....+....+-+..|.+... .....+..+...++..++.++.||+ |||+.++.+...
T Consensus 291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~ 368 (513)
T KOG0254|consen 291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG 368 (513)
T ss_pred chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence 34455555555566665555444444334444556766443 5555666667778888889999997 999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
..++.++++........ +...........+....+.......+..|..+.+..|.+|.+- |+
T Consensus 369 m~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~ 430 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALY------------YPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RS 430 (513)
T ss_pred HHHHHHHHHHHHHHhcc------------CCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hh
Confidence 99988888876431110 0000001111122222222233333445566678899999887 77
Q ss_pred cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008953 194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLF 239 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~ 239 (547)
++.++......+...+-......+.+..++...|........+..+
T Consensus 431 ~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~ 476 (513)
T KOG0254|consen 431 KGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI 476 (513)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 7777654443333332222223333332233445544444444444
No 245
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.74 E-value=0.078 Score=56.09 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 455 TLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV 514 (547)
Q Consensus 455 ~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~ 514 (547)
..+...++.+.++--+|.=..--...-+..|.+|+++||...|+-+..+++--.+.-.++
T Consensus 353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777777766666677777889999999999999999988887776655543
No 246
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.60 E-value=7.2e-05 Score=77.55 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChh
Q 008953 342 VVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPL 421 (547)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~ 421 (547)
.+.+++.+++-++--+.+++.+.......+.. .-..+.++..-.+..+++.|+.+.+.+ |+ .++
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~-----~s~~Gll~~vf~v~~~i~sPl~gyLad----ry-------NR~ 98 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNIS-----DSELGLLQTVFIVVFMIASPLFGYLAD----RY-------NRK 98 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCC-----chhccchhHHHHHHHHHHHHHHHHHHh----hc-------Ccc
Confidence 44455666666666565555333211111111 112244555556667888888887644 43 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHH
Q 008953 422 QRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYC 501 (547)
Q Consensus 422 ~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~ 501 (547)
+.+.+|..+++++.+..++.+ +.|.+++.-.+.|+||....|...+++.+.+|.+.|++..+++++
T Consensus 99 ~v~~vG~~iW~~Av~~~~fs~--------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~ 164 (493)
T KOG1330|consen 99 RVIAVGIFIWTLAVFASGFSN--------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYF 164 (493)
T ss_pred eEEeeHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhh
Confidence 568999999999999888863 577778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 008953 502 SYSFGFYLSSLLVSFVNKVT 521 (547)
Q Consensus 502 ~~~~G~~lg~~i~~~l~~~~ 521 (547)
...+|+.+|-.+...+.+.+
T Consensus 165 ~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 165 AIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred hcccccceeEEeeeeeccCc
Confidence 99999888877666555543
No 247
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.0001 Score=76.32 Aligned_cols=177 Identities=13% Similarity=0.017 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHH--------HHHHHHHHHHH-HHhhhhHHhhcccchHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSAN--------IVTNFIGTVFL-LALLGGYLSDSFLGSFWTMLI 109 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~--------i~~~~~~~~~~-~~~~~G~laDr~~Gr~~~~~~ 109 (547)
+...+..-|....++|+...+...-++ .+|+.+.+... ...+....+.+ +..+...+.|+. |||++-+.
T Consensus 306 Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq~~ 383 (538)
T KOG0252|consen 306 LLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQLM 383 (538)
T ss_pred HHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHHHh
Confidence 334444445556677776655554444 35554443332 12222222222 556777889996 99999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccc
Q 008953 110 FGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS 189 (547)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~ 189 (547)
+.++..+..+.++...+- . + .+...+...-+.+.++.-+.....-.+-+|.||.+.
T Consensus 384 GF~~~~i~~~~~~~~y~~----------------~-~---~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv---- 439 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQ----------------L-E---NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV---- 439 (538)
T ss_pred hHHHHHHHHHHHcCCccc----------------c-c---ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH----
Confidence 999988888777775430 0 0 111112222223445555555666677799999888
Q ss_pred cccccchhhhhhHHhHhHHHHHHHHHHhhc-----ccchhhHHHHHHHHHHHHHHHHHH
Q 008953 190 KKLSSYFNAAYFAFSTGELVALTVLVWVQT-----HSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 190 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~-----~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
|+++.++.-.+.=+|++++.....++.+ ..|.+..+++.+.+++++.+..++
T Consensus 440 --R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 440 --RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred --hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 9999999988889999999999999998 788999999988888877766544
No 248
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.46 E-value=0.0018 Score=72.27 Aligned_cols=177 Identities=14% Similarity=0.123 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhhhhHHhhcccc--hHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIG-TVFLLALLGGYLSDSFLG--SFWTMLIFGFV 113 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~G--r~~~~~~~~~~ 113 (547)
+.++...+..++....++++..++|.|+++.+|+++.+++++.+...+ +..++.+++|+++||+ + .|+.+.++.+.
T Consensus 330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~ 408 (633)
T TIGR00805 330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICL 408 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHH
Confidence 467788888899999999999999999999999999999999888766 5689999999999996 7 55677776666
Q ss_pred HHHHHHHHHHhhcc------------C--C----CCCC-CCC--------------------------------CCCCCC
Q 008953 114 ELSGFILLSVQAHL------------P--Q----LKPP-KCN--------------------------------MVTDSE 142 (547)
Q Consensus 114 ~~i~~~l~~~~~~~------------~--~----~~~~-~~~--------------------------------~~~~~~ 142 (547)
..++.++......+ | . .... .|+ ..+++.
T Consensus 409 ~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~ 488 (633)
T TIGR00805 409 STLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSN 488 (633)
T ss_pred HHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCc
Confidence 66654442210000 0 0 0001 221 000000
Q ss_pred --------------------cccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhH
Q 008953 143 --------------------NCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA 202 (547)
Q Consensus 143 --------------------~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 202 (547)
.|+.+=......+++..++..+..+........++-+..|+++ |.-+.++..+.
T Consensus 489 ~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~------rs~alg~~~~~ 562 (633)
T TIGR00805 489 MVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE------KSLAIGLQWLC 562 (633)
T ss_pred ceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc------chHHhhHHHHH
Confidence 1211111113334444444444444444444566788899888 89999997776
Q ss_pred H-hHhHHHHHHHHHHhhcc
Q 008953 203 F-STGELVALTVLVWVQTH 220 (547)
Q Consensus 203 ~-~ig~~~~~~i~~~l~~~ 220 (547)
. -+|.+-+|++.|++.|.
T Consensus 563 ~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 563 MRVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHHhcCCChhHHHhhhhhc
Confidence 6 56888899999988876
No 249
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.30 E-value=0.0068 Score=64.24 Aligned_cols=84 Identities=10% Similarity=0.083 Sum_probs=75.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH
Q 008953 419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM 498 (547)
Q Consensus 419 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~ 498 (547)
+.++.+.++.+..++..++.++. .+...+.+.-+++|++|+... ....++++-+|+++|++++|.
T Consensus 90 G~K~vL~l~~l~Wsl~t~L~~fa--------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi 154 (511)
T TIGR00806 90 RYKPVLVLQALSFVCVWLLLLLG--------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAY 154 (511)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHH
Confidence 34466888989998888888875 367888899999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008953 499 TYCSYSFGFYLSSLLVSFV 517 (547)
Q Consensus 499 ~~~~~~~G~~lg~~i~~~l 517 (547)
.+....+|.++++.+.+++
T Consensus 155 ~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 155 SRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999983
No 250
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.19 E-value=0.0038 Score=68.30 Aligned_cols=152 Identities=11% Similarity=-0.053 Sum_probs=107.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChh---hHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHH-H
Q 008953 34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLS---NSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTML-I 109 (547)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~---~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~ 109 (547)
+.+|.+.+.+++.++..+.+|.+..+.|......++-++. +.++....+.++..++.++.|++.-++ +|-|..+ +
T Consensus 307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~ 385 (599)
T PF06609_consen 307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF 385 (599)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence 3357888888889999999999988888888777766653 567788888888888999999999885 8766654 5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccc
Q 008953 110 FGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS 189 (547)
Q Consensus 110 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~ 189 (547)
+.++.+++...++.... ++....+...++.|+|.|...........-..|++.
T Consensus 386 ~~~~~ta~~Gama~~~~-----------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~---- 438 (599)
T PF06609_consen 386 GSVLMTAFCGAMAAVRP-----------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED---- 438 (599)
T ss_pred HHHHHHHHHHHHHHccC-----------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH----
Confidence 55555555555444321 222233455667788888776666565555567666
Q ss_pred cccccchhhhhhHHhHhHHHHHHHHH
Q 008953 190 KKLSSYFNAAYFAFSTGELVALTVLV 215 (547)
Q Consensus 190 ~~r~~~~~~~~~~~~ig~~~~~~i~~ 215 (547)
.+.+.++....-.+|+.+|..+..
T Consensus 439 --ig~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 439 --IGTATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 788888877777888888777644
No 251
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.19 E-value=0.0055 Score=63.71 Aligned_cols=186 Identities=13% Similarity=0.014 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.+++++++..+....+|++...+-.-+ ..-|++...+|.+.....++..++.+++|.++||.-.-|+++++......+
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v 344 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV 344 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 5577777777777777776655443222 346788888999999999999999999999999973334455555555555
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCC-CCCCcccccccccc
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQF-DQSNPKQSKKLSSY 195 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~ 195 (547)
+...+...+..+ .....++..-.+.|++..+..|.---+..|.. |..+ +..
T Consensus 345 ~~~~l~~~t~~~---------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tS 396 (480)
T KOG2563|consen 345 GTLMLLTCTLFL---------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTS 396 (480)
T ss_pred HHHHHHHhhccC---------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------ccc
Confidence 532222222111 12233445555677777777787777777764 5443 444
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccc----hhhHHHHHHHHHHHHHHHHHHcCceeecc
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSG----MDVGFGVSAAAMALGLFGVVSGTLYYRNK 251 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g----~~~~f~~~~~~~~~~l~~~~~~~~~~~~~ 251 (547)
.|+.+...++-+.+=.++.+...+..+ |...-+......++.+++..+.++.+++.
T Consensus 397 sGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 397 SGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred ceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 666666666666655566677666555 33333333445555666666666665544
No 252
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.19 E-value=0.0073 Score=54.52 Aligned_cols=111 Identities=10% Similarity=0.079 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccc
Q 008953 71 SLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGF 150 (547)
Q Consensus 71 ~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (547)
++..--.-.++......+..++++.+.+++ |.|++++++.+.+.+-...... +
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~--------------------------~ 87 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY--------------------------P 87 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh--------------------------h
Confidence 333333445556666778888889999985 9999999998887765444332 3
Q ss_pred hhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHH
Q 008953 151 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL 214 (547)
Q Consensus 151 ~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~ 214 (547)
+...++.+-++.|++.+..+.....++.+..+++. |++..+++....+.+.++|..+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 45668888889999999999999999998877665 77777777666677766666553
No 253
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.09 E-value=0.0055 Score=66.02 Aligned_cols=85 Identities=7% Similarity=0.022 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchh--hHHHHHHHH
Q 008953 422 QRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG--MQAFLTAMT 499 (547)
Q Consensus 422 ~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~--~rg~~~g~~ 499 (547)
+.+.+|.++.+++.++.+..+ .+...+.+...+..+|.++..+...++..|.+|++ .|+++.+++
T Consensus 77 r~iliG~il~~lg~lll~~~~-------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~ 143 (493)
T PRK15462 77 MAVMLGALLMAIGHVVLGASE-------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLM 143 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHH
Confidence 557888888888877655321 11122334445556677777777788999999976 799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008953 500 YCSYSFGFYLSSLLVSFVNK 519 (547)
Q Consensus 500 ~~~~~~G~~lg~~i~~~l~~ 519 (547)
+...++|+.++|.+.+++.+
T Consensus 144 Y~~~nlG~~iap~l~g~L~~ 163 (493)
T PRK15462 144 YAAGNVGSIIAPIACGYAQE 163 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99988999999999998854
No 254
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.88 E-value=0.0087 Score=60.95 Aligned_cols=152 Identities=12% Similarity=0.105 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHh-hhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccch-HHHHHHHHHHHH
Q 008953 38 AAVFVLGLQAFEIMAIAAVGNNLITYV-INEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGS-FWTMLIFGFVEL 115 (547)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr-~~~~~~~~~~~~ 115 (547)
..++.+....+.....|....+...++ .+.+|+++.|.|-+.+.-.+.+.+.+..-....||..|. +..+..++....
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 344444444444444444444444555 456999999999998888888888888888888887443 334444444444
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
-..++...+. ....++++..+..+..+...+....++....|+++ ||..
T Consensus 341 P~~llls~~~-------------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~ 389 (451)
T KOG2615|consen 341 PAFLLLSLAR-------------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTL 389 (451)
T ss_pred HHHHHHhccc-------------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHH
Confidence 4444544442 23447777778888888888888899999999888 9999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcc
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTH 220 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~ 220 (547)
.|+......++=++||.++|.+..+
T Consensus 390 ~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 390 NGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHHHHHHHHhhhhhhheeEEE
Confidence 9999999999999999999887654
No 255
>PRK03612 spermidine synthase; Provisional
Probab=96.87 E-value=0.055 Score=58.93 Aligned_cols=176 Identities=13% Similarity=0.043 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHH-HHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTML-IFGFVEL 115 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~~ 115 (547)
+.+..+.++..+..+.+= ....-.+...+|-+....+.+.+++.++..++..++|+++++. -|+...+ +.+.+..
T Consensus 17 ~~l~~~~f~sg~~~L~yE---v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~ 92 (521)
T PRK03612 17 ALLLAAVFVCAACGLVYE---LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLG 92 (521)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHH
Confidence 444444444434434333 3344445556888889999999999999999999999887553 3332222 1111111
Q ss_pred -HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccccc
Q 008953 116 -SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS 194 (547)
Q Consensus 116 -i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 194 (547)
+...++.....+. ......++...++.++..|+..|....+..+... ++ -++
T Consensus 93 ~~~~~ll~~~~~~~--------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~ 145 (521)
T PRK03612 93 GLSALILYAAFAFQ--------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGH 145 (521)
T ss_pred HHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhh
Confidence 1111111111000 0011112223334566666666665554443222 11 244
Q ss_pred chhhhhhHHhHhHHHHHHHHHHhhc-ccch-hhHHHHHHHHHHHHHHHHHH
Q 008953 195 YFNAAYFAFSTGELVALTVLVWVQT-HSGM-DVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 195 ~~~~~~~~~~ig~~~~~~i~~~l~~-~~g~-~~~f~~~~~~~~~~l~~~~~ 243 (547)
..+..|....+|+++|.++.+++.- ..|- +..+.+..+-.+++++.++.
T Consensus 146 ~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 146 NVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred hhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888899999999886644 6774 44444444344444444443
No 256
>PTZ00207 hypothetical protein; Provisional
Probab=96.80 E-value=0.0061 Score=66.93 Aligned_cols=174 Identities=9% Similarity=0.012 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc-CCCh-hhHHH-HHHHHHHHHHHHHhhhhHHhhcccchHH--------
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEM-HFSL-SNSAN-IVTNFIGTVFLLALLGGYLSDSFLGSFW-------- 105 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-g~~~-~~~~~-i~~~~~~~~~~~~~~~G~laDr~~Gr~~-------- 105 (547)
..+|++.+..+|..-+...+..++- ++.+.+ |.+. .+... .++...+..+++++.+|.++. +.-||+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~-~~~~~~~~~r~prt 430 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEI-WSQKRRAEDRVPIT 430 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHH-HHHhhccccccchh
Confidence 4478888888887777666666554 444557 6633 32222 789999999999999999983 324443
Q ss_pred -HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCC
Q 008953 106 -TMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQS 184 (547)
Q Consensus 106 -~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~ 184 (547)
.+.+..+ ..++++++++. +| ...++++-++.|++.|...+...+...|.|- +
T Consensus 431 ~~l~~~~~-~~~~~lll~~~--~p-----------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k 483 (591)
T PTZ00207 431 IALFIPSV-CIITMLTLFLT--LP-----------------------KAALPLPYFIAAFANGFMAATIALVTRTIFA-K 483 (591)
T ss_pred HHHHHHHH-HHHHHHHHHHH--CC-----------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-c
Confidence 2223333 55666666664 22 1358889999999999999999999999999 7
Q ss_pred CcccccccccchhhhhhHHhHhHHHH-HHHHHHhhcc----------cc---hhhHHHHHHHHHHHHHHHHHHcC
Q 008953 185 NPKQSKKLSSYFNAAYFAFSTGELVA-LTVLVWVQTH----------SG---MDVGFGVSAAAMALGLFGVVSGT 245 (547)
Q Consensus 185 ~~~~~~~r~~~~~~~~~~~~ig~~~~-~~i~~~l~~~----------~g---~~~~f~~~~~~~~~~l~~~~~~~ 245 (547)
+ -++-++....+.-+|+.+= -.+.|.+.++ .| ++.+|++.++..+++.+.-...+
T Consensus 484 ~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 484 D------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred c------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 7 5666666666666666542 3344554322 12 66788887777777666544443
No 257
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=96.61 E-value=0.023 Score=45.36 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=59.1
Q ss_pred HHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhc
Q 008953 60 LITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAH 126 (547)
Q Consensus 60 l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~ 126 (547)
+.+.+.++.++|.++++++-+.-.+++.++.+...++.++. .+++.+..+++...+..+.+++..+
T Consensus 14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45577788999999999999999999999999999999985 8899999999999999999888643
No 258
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.60 E-value=0.0094 Score=63.68 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=114.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHH-HHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhh-HHhhcccchHHHHHHHH
Q 008953 34 GGMKAAVFVLGLQAFEIMAIAAVGN-NLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGG-YLSDSFLGSFWTMLIFG 111 (547)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G-~laDr~~Gr~~~~~~~~ 111 (547)
++.|..+.+++..+.....-.+-.. .++.|+...+++++.+.+...+.......++.++.. .+.-. +|-|+.+..|+
T Consensus 237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl 315 (463)
T KOG2816|consen 237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGL 315 (463)
T ss_pred CCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHH
Confidence 3445555555555544333322111 346788889999999999999999999999998888 55555 69999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953 112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK 191 (547)
Q Consensus 112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 191 (547)
+...+...+.+++.. .++++....+. ...+...|...++...+.++++
T Consensus 316 ~~~~~~~~~~af~~~-------------------------~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~e------ 363 (463)
T KOG2816|consen 316 LSEFLQLLLFAFATE-------------------------TWMMFAAGVVV-ALAGIVFPAIRAFASILVSPEE------ 363 (463)
T ss_pred HHHHHHHHHHHHhcc-------------------------chhhhHHHHHH-HhhcchhHHHHhHHHhhccccc------
Confidence 999999999999843 34455555444 4456677888999999999888
Q ss_pred cccchhhhhhHHhHhHHHHHHHHHHhh
Q 008953 192 LSSYFNAAYFAFSTGELVALTVLVWVQ 218 (547)
Q Consensus 192 r~~~~~~~~~~~~ig~~~~~~i~~~l~ 218 (547)
+++.+++....-.+.+.++|.+-+.+.
T Consensus 364 ~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 364 QGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred ccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 899999999999999999988877653
No 259
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=96.54 E-value=0.47 Score=53.15 Aligned_cols=313 Identities=8% Similarity=-0.068 Sum_probs=180.4
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccc
Q 008953 68 MHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEA 147 (547)
Q Consensus 68 lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (547)
.+...........++.....+..+.....+|-.-++-......++...+..+...+.+- +. ..
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a----------------~~ 77 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GA----------------IP 77 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cc----------------Cc
Confidence 34444556777888888899999999999998766666777766667776666665421 11 01
Q ss_pred ccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhh--
Q 008953 148 KGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDV-- 225 (547)
Q Consensus 148 ~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~-- 225 (547)
.........+..+.+.++.++..+..+.+.+++.+..++++ +.+..+.+++..+.+.+ |.+++..+.....-+.
T Consensus 78 ~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~ 153 (654)
T TIGR00926 78 SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGC 153 (654)
T ss_pred ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc
Confidence 11112334456666788899999999999999999876432 66788889888887766 4566666665443221
Q ss_pred -----HHH-HHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccc
Q 008953 226 -----GFG-VSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVF 299 (547)
Q Consensus 226 -----~f~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (547)
.|. ..++.+++.++.++.....++..++++.+.....++........+.+
T Consensus 154 fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~------------------------ 209 (654)
T TIGR00926 154 FGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR------------------------ 209 (654)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh------------------------
Confidence 133 45556666666777665555555444332222233322222111100
Q ss_pred cccchhHhhhhhhccccCCCCCCCCCccc--cchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCc
Q 008953 300 LTQRFRFLDKACIKVEDGTNKKESPWRLC--TVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN 377 (547)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (547)
.. .........|..+ .....++.+...+.+.++...+.+++.+.+.......+...++...+ .
T Consensus 210 ------------~~--~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~ 274 (654)
T TIGR00926 210 ------------FS--TRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-D 274 (654)
T ss_pred ------------hc--cCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-c
Confidence 00 0000000112111 12223456677778888888888888877765555555445555432 2
Q ss_pred ceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008953 378 FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEK 443 (547)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~ 443 (547)
++..+.....++.+-.++..++...+..++.+++.++ ..+.+.+.-+.+.+.++.+.++....
T Consensus 275 l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ 337 (654)
T TIGR00926 275 VGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAAL 337 (654)
T ss_pred cCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 2222223446666667777777766666777776433 23455566666666666666555543
No 260
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.44 E-value=0.012 Score=62.45 Aligned_cols=199 Identities=9% Similarity=0.009 Sum_probs=119.7
Q ss_pred CCcCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHH--HhhhhHHhhcccch---H
Q 008953 30 PNKHGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLL--ALLGGYLSDSFLGS---F 104 (547)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~--~~~~G~laDr~~Gr---~ 104 (547)
+..+..++..+.++++.+..++.+..+-...+......++.+.+++....+.......+. .+......-|. |+ |
T Consensus 255 ~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~~i~~r 333 (488)
T KOG2325|consen 255 KKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-GKIDKR 333 (488)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hhhccc
Confidence 333455677777788888888888877777777777778888888777766664443322 23333333342 43 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCC-CCCCCCC---------cccccccchhHHHHHHHH-HHHHhccccccch
Q 008953 105 WTMLIFGFVELSGFILLSVQAHLPQLKPPKC-NMVTDSE---------NCEEAKGFKASIFFLALY-LVAIGSGCVKPNM 173 (547)
Q Consensus 105 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~-l~gig~g~~~~~~ 173 (547)
+.+..+.+.......+.. .|.-.-+.. +.+++.+ -|....-.+...+++... +.|++.-......
T Consensus 334 ~~~~~g~l~~f~~~~i~~----yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~ 409 (488)
T KOG2325|consen 334 RIILLGFLIFFLSYYIFT----YPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTAL 409 (488)
T ss_pred eeeeehHHHHHHhhheee----eeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchH
Confidence 444444333222221111 121111000 1222221 133333344444444433 3566666666677
Q ss_pred hhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008953 174 IAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLF 239 (547)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~ 239 (547)
.++..++..+.+ ++...+.+.....++..+||++...+....|.++.+.+.++..++...
T Consensus 410 ~tlySkiLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 410 DTLYSKILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred HHHHHHHhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence 888999998887 788889999999999999999999998888988777766554444433
No 261
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.41 E-value=0.063 Score=59.73 Aligned_cols=178 Identities=14% Similarity=0.088 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhhhhHHhhcc-cchHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIG-TVFLLALLGGYLSDSF-LGSFWTMLIFGFVE 114 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~-~Gr~~~~~~~~~~~ 114 (547)
+...+.++...++...+-+..+++|-|+.+.++.+.+.+..+.+...+ +.+++.+++|++.-|+ +..|.+..+.++..
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~ 471 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS 471 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence 335677788889999999999999999999999999999999977655 5678889999999987 34555555544443
Q ss_pred HHHHHH---HHHhh--ccCC------------CCCCC-----CC--------------------------------CCCC
Q 008953 115 LSGFIL---LSVQA--HLPQ------------LKPPK-----CN--------------------------------MVTD 140 (547)
Q Consensus 115 ~i~~~l---~~~~~--~~~~------------~~~~~-----~~--------------------------------~~~~ 140 (547)
.+..+. ..+.. +.+. ...+. |+ ..++
T Consensus 472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~ 551 (735)
T KOG3626|consen 472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS 551 (735)
T ss_pred HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence 333322 11110 0000 00011 21 1111
Q ss_pred --CC---c------------------ccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchh
Q 008953 141 --SE---N------------------CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFN 197 (547)
Q Consensus 141 --~~---~------------------~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 197 (547)
+. + |+.+.......+++..++..+..+........++-+..++++ |.-++|
T Consensus 552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG 625 (735)
T KOG3626|consen 552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALG 625 (735)
T ss_pred CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhH
Confidence 11 1 222223334444444444444444444455566788888888 899999
Q ss_pred hhhhHH-hHhHHHHHHHHHHhhcc
Q 008953 198 AAYFAF-STGELVALTVLVWVQTH 220 (547)
Q Consensus 198 ~~~~~~-~ig~~~~~~i~~~l~~~ 220 (547)
+..+.. -+|.+-+|++.|++.|.
T Consensus 626 ~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 626 FQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred HHHHHHHHHhcCCchHhhhhhHhh
Confidence 977766 56888899999998654
No 262
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=96.13 E-value=1.4 Score=46.89 Aligned_cols=63 Identities=10% Similarity=0.085 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008953 459 FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT 521 (547)
Q Consensus 459 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~ 521 (547)
..++..+++..+..-..+++..++-++++.+..-|+.|.+.|+..++|+-.-..++-++.+..
T Consensus 406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 344557778888888888999999999999999999999999999999999998888877753
No 263
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.03 E-value=0.0017 Score=70.97 Aligned_cols=177 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHH-HHHHHHhhhhHHhhcc-cchHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIG-TVFLLALLGGYLSDSF-LGSFWTMLIFGFVELS 116 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~-~Gr~~~~~~~~~~~~i 116 (547)
+.+..+...++.+..-++..++|-|+.++++.++++++.+.+...+ +..++.+++|++..|+ ++.|+.+....+...+
T Consensus 307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v 386 (539)
T PF03137_consen 307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIV 386 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence 5666677778888888999999999999999999999999887766 6778999999999997 3345555554444333
Q ss_pred HHHH---HHHh--hccCC--CCC---------------CCCCCCC-------CCCcccccccchhHHHHHHHHHHHHhcc
Q 008953 117 GFIL---LSVQ--AHLPQ--LKP---------------PKCNMVT-------DSENCEEAKGFKASIFFLALYLVAIGSG 167 (547)
Q Consensus 117 ~~~l---~~~~--~~~~~--~~~---------------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~gig~g 167 (547)
..++ ..+. .+.+. +-. ..|+... ....|+.+-......+++..++..+..+
T Consensus 387 ~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~ 466 (539)
T PF03137_consen 387 SVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTF 466 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHH
Confidence 3322 1111 00000 000 1111100 0012333312344455555555444444
Q ss_pred ccccchhhhcccCCCCCCcccccccccchhhhhhHH-hHhHHHHHHHHHHhhccc
Q 008953 168 CVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAF-STGELVALTVLVWVQTHS 221 (547)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~ig~~~~~~i~~~l~~~~ 221 (547)
........+.-+..|+++ |.-+.|+..... -+|.+=||++.|.+.|..
T Consensus 467 ~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 467 MSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -------------------------------------------------------
T ss_pred hcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 444444455668888888 888999877665 568888999999888763
No 264
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=95.96 E-value=0.15 Score=55.50 Aligned_cols=144 Identities=10% Similarity=0.057 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHH
Q 008953 39 AVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGF 118 (547)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 118 (547)
...+.+..+.....+|++ .+....+|.+..-....... .........+.+-|+. |||.....+.++..++.
T Consensus 324 ~~~~~~~~~~~~~~y~gl-----~~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~ 394 (521)
T KOG0255|consen 324 TLYLLFIWFVFSLVYYGL-----SLNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGL 394 (521)
T ss_pred HHHHHHHHHHHhHHHHhh-----hhhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 333334333344444443 33334455555433333333 4445556668999996 99999999999988888
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhh
Q 008953 119 ILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA 198 (547)
Q Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 198 (547)
+..+....- .......+...+...+.+..........+|.+|+.. |..+.+.
T Consensus 395 ~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~~~~~ 446 (521)
T KOG0255|consen 395 LLFGWLPDD----------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNTAVGA 446 (521)
T ss_pred HHHHHhhcc----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHH
Confidence 888876320 110111122222222233333344777899999888 8999999
Q ss_pred hhhHHhHhHHHHHHHHHHhhc
Q 008953 199 AYFAFSTGELVALTVLVWVQT 219 (547)
Q Consensus 199 ~~~~~~ig~~~~~~i~~~l~~ 219 (547)
......+|.+++|.+.-....
T Consensus 447 ~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 447 ISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999988544433
No 265
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=95.91 E-value=0.3 Score=44.09 Aligned_cols=86 Identities=10% Similarity=0.149 Sum_probs=68.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH
Q 008953 419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM 498 (547)
Q Consensus 419 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~ 498 (547)
++++.+.+|.++.++-.+.... .+.+.+++.-++.|+|.++.+++...+.++..+++.|++-.++
T Consensus 65 g~K~sm~lg~~~y~~y~~~~~~---------------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~i 129 (156)
T PF05978_consen 65 GPKWSMILGSLGYAIYIASFFY---------------PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGI 129 (156)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHH
Confidence 4456677776666543333322 3567888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008953 499 TYCSYSFGFYLSSLLVSFVNK 519 (547)
Q Consensus 499 ~~~~~~~G~~lg~~i~~~l~~ 519 (547)
+......+..+|..+.-.+..
T Consensus 130 fw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 130 FWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999998888887766655
No 266
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=95.12 E-value=0.17 Score=53.03 Aligned_cols=162 Identities=15% Similarity=0.017 Sum_probs=111.7
Q ss_pred HHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCC
Q 008953 339 LISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGI 418 (547)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~ 418 (547)
++....+.+..-.+|+...+..+.+.++ ...+.. -.+.++.+.++..++..|+.+...|+-..|++||++
T Consensus 34 li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk-------~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP-- 103 (498)
T KOG0637|consen 34 LISVASIAAGVQFGWALELSYLTPYLQS-LGVPHK-------WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP-- 103 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcc-------cccccccccccccceecccccccccccccccccccc--
Confidence 3444444455555666655555544332 222222 235567788888999999999999988888887753
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC----CCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHH
Q 008953 419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDS----GKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAF 494 (547)
Q Consensus 419 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~ 494 (547)
-+.++.++.++++.+.++.....+ ...|+ ...-.+...++.+.+.-++....+.+.=++..+....+.+.+
T Consensus 104 ----fI~~~s~~i~~~l~Lig~aaDig~-~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~ 178 (498)
T KOG0637|consen 104 ----FILAGSLLIAVSLFLIGYAADIGL-LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT 178 (498)
T ss_pred ----hHHHhhHHHHHHHhhhhhHhhhhH-HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh
Confidence 367778888888887776532211 11111 223455566778889999998999888999999888888888
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH
Q 008953 495 -LTAMTYCSYSFGFYLSSLLVS 515 (547)
Q Consensus 495 -~~g~~~~~~~~G~~lg~~i~~ 515 (547)
+.+.+.+.-.+||.+|-++.+
T Consensus 179 ~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 179 RANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred ccchhHHHHHHhcceeeeeccc
Confidence 999999999999998877654
No 267
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=94.00 E-value=0.31 Score=50.93 Aligned_cols=145 Identities=12% Similarity=-0.006 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHH
Q 008953 41 FVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFIL 120 (547)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l 120 (547)
-+..+.++|.+...++..-+. ......-...+--+...+|.++..+++--. .++.-|++.+.+.+-..-..++
T Consensus 251 PL~lVY~aEY~InqGv~~tl~--fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~-----~~~rir~lwils~LQ~~nl~~~ 323 (402)
T PF02487_consen 251 PLFLVYFAEYFINQGVAPTLL--FPNSFFSPRDQYRWYQLLYQLGVFISRSSL-----PFFRIRRLWILSLLQVINLVFL 323 (402)
T ss_pred HHHHHHHHHHHHHhchHHHhc--CCccCCCHHHHHHHHHHHHHHHHhhhhcce-----eeeehhhHHHHHHHHHHHHHHH
Confidence 355566666555555443221 112222223445566667777766665432 2233355544444332222222
Q ss_pred HHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhh
Q 008953 121 LSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY 200 (547)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 200 (547)
...+ .+.. .++.+.+++..+..|+..|..+.+....+.|..|+++ |+-.++...
T Consensus 324 ~l~s-~~~f-------------------ipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vs 377 (402)
T PF02487_consen 324 LLQS-WYRF-------------------IPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVS 377 (402)
T ss_pred HHHH-HHHH-------------------hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHH
Confidence 1111 1111 1345666666677899999999999999999888777 899999988
Q ss_pred hHHhHhHHHHHHHHHHhh
Q 008953 201 FAFSTGELVALTVLVWVQ 218 (547)
Q Consensus 201 ~~~~ig~~~~~~i~~~l~ 218 (547)
++-++|..++..++-++.
T Consensus 378 vsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 378 VSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 888888888877765543
No 268
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=93.72 E-value=1.3 Score=46.89 Aligned_cols=149 Identities=13% Similarity=0.022 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHH
Q 008953 42 VLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILL 121 (547)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~ 121 (547)
..+...+-.++.-+.-..++.|+... |+++...+..=+...+....+.++..++-+|+ |..|+=.+++..-.....++
T Consensus 263 as~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~ 340 (432)
T PF06963_consen 263 ASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALC 340 (432)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHH
Confidence 33333344444445556788899875 99999999999999999999999999999997 99999888888776666666
Q ss_pred HHhhccCCCCCCCCCCCCCCCccccc-ccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhh
Q 008953 122 SVQAHLPQLKPPKCNMVTDSENCEEA-KGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY 200 (547)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 200 (547)
..+-..+.- + +......++.+.++-=+|.=++--...-++-|..|+++ |+...+..+
T Consensus 341 v~~~~~~~~----------------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~ 398 (432)
T PF06963_consen 341 VVSFWAPGS----------------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQN 398 (432)
T ss_pred HHHHhcCCC----------------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHH
Confidence 554332220 0 11233334433333334444555566677788888877 899999888
Q ss_pred hHHhHhHHHHHHHH
Q 008953 201 FAFSTGELVALTVL 214 (547)
Q Consensus 201 ~~~~ig~~~~~~i~ 214 (547)
...++...+...++
T Consensus 399 sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 399 SLQSLFELLSFVLT 412 (432)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776663
No 269
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=93.58 E-value=3.4 Score=44.61 Aligned_cols=169 Identities=10% Similarity=0.074 Sum_probs=94.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCC---ChhhHHHHHHHHHH-HHHHHHhhhhHHhhcccchHHHHHHH
Q 008953 35 GMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHF---SLSNSANIVTNFIG-TVFLLALLGGYLSDSFLGSFWTMLIF 110 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---~~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~~~ 110 (547)
-+++++.+.++.++-.+.|..+.. +.+.+=. +++....+-....+ ...+..++-.+++|++ +|.+++.+.
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~ 95 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYII 95 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 356777777777777666543332 2222211 33334444443333 4556677889999997 999999887
Q ss_pred HHHHHHHHHHHHHhhccCC--CCCCCCCCCCCCC----cc----cccccchhHHHHHHHHHHHHhcccccc-chhhhccc
Q 008953 111 GFVELSGFILLSVQAHLPQ--LKPPKCNMVTDSE----NC----EEAKGFKASIFFLALYLVAIGSGCVKP-NMIAHGAD 179 (547)
Q Consensus 111 ~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~l~gig~g~~~~-~~~~~~~~ 179 (547)
...+...+.+.++.- +|. .+.|+..--..+. +. ..-+.+....+++.-=+. .....+ ..+.+..|
T Consensus 96 ~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElw---gsvvlSlLFW~fAN~ 171 (491)
T PF03219_consen 96 IIPFLGFFALFAFVL-YPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELW---GSVVLSLLFWGFANE 171 (491)
T ss_pred HHHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 777776666666542 121 1111110000000 00 011122222333322222 222222 45788899
Q ss_pred CCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhc
Q 008953 180 QFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT 219 (547)
Q Consensus 180 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~ 219 (547)
.++.++ -.+.++.+..+.|+|.+++..+..++.+
T Consensus 172 itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 172 ITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred cCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998777 5568999999999999999888888777
No 270
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.57 E-value=1.6 Score=46.41 Aligned_cols=135 Identities=17% Similarity=0.126 Sum_probs=83.9
Q ss_pred hcCCChhhHHHHH-HHHHHHHHHHHhhhhHHhhcc--cchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCc
Q 008953 67 EMHFSLSNSANIV-TNFIGTVFLLALLGGYLSDSF--LGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSEN 143 (547)
Q Consensus 67 ~lg~~~~~~~~i~-~~~~~~~~~~~~~~G~laDr~--~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (547)
..+.+....-.+. .....+..++.++.+.+++|. +||++++.++.++..++.++.-+.. |.-.+ ...+.+
T Consensus 272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~dap-----~~~t~~ 344 (461)
T KOG3098|consen 272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PNDAP-----LRPTDS 344 (461)
T ss_pred hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cccCC-----CCCCcc
Confidence 3444444332222 222334445556666665443 4899999999999888887777653 22110 011112
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHH
Q 008953 144 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLV 215 (547)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~ 215 (547)
.+...+++.....+.-++.|++-+........++++.+|++ |..+++++-+...++..++.+...
T Consensus 345 ~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 345 PPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred cccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 23334445556666777899999999999999999999544 567788877777777666555443
No 271
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=91.30 E-value=1.2 Score=43.58 Aligned_cols=175 Identities=15% Similarity=0.034 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhh--HHHHHHHHHHHHHHHHhhhhHHhhcccch--HHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSN--SANIVTNFIGTVFLLALLGGYLSDSFLGS--FWTMLIFGF 112 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~--~~~i~~~~~~~~~~~~~~~G~laDr~~Gr--~~~~~~~~~ 112 (547)
|...+-.+-..++...|-.+..|.|. +.-++.+ -|.+.+.+.+.+.+++-+...+..|- .. ...+.+..+
T Consensus 249 ki~LLG~iqsLFE~smytFVFLWTPa-----Lspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~ 322 (454)
T KOG4332|consen 249 KIALLGAIQSLFEGSMYTFVFLWTPA-----LSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFL 322 (454)
T ss_pred HHHHHHHHHHHHhhhhheeeeeeccc-----CCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHH
Confidence 33344445555666555544445442 3333333 47888888888888877776665552 22 223444433
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953 113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL 192 (547)
Q Consensus 113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 192 (547)
+.... +++.+.++... ++++.+..-+++..++-..+|.++|.++-+=.+..|++. |
T Consensus 323 vs~a~-l~Lpilt~~vs-----------------P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------r 378 (454)
T KOG4332|consen 323 VSIAA-LLLPILTSSVS-----------------PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------R 378 (454)
T ss_pred HHHHH-HHHHHHHhccC-----------------CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------H
Confidence 33332 22222222111 112333334566666777889999999988888899988 9
Q ss_pred ccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008953 193 SSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGV 241 (547)
Q Consensus 193 ~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~ 241 (547)
.+.++++..-.|+-..++-..--.=....+-|..|-++.+.+.++.+..
T Consensus 379 stimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 379 STIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQ 427 (454)
T ss_pred hhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHH
Confidence 9999999888887766543221111122345678888877777665543
No 272
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=90.97 E-value=2.8 Score=42.25 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=68.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH
Q 008953 33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF 112 (547)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 112 (547)
+..-|+++.+....+....++-+. .++......++| . .+ .+.........+++.+.+..+ +|-|.++.++..
T Consensus 25 ~~~~knv~i~s~~fl~~f~a~~gl-~nlq~~vn~~lg--~--~s--l~~~y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~ 96 (390)
T KOG3097|consen 25 LGILKNVLILSIAFLLTFTAYLGL-QNLQTSVNYDLG--T--VS--LGALYLSLIDSSMFMPLLIRF-LGTKWTMVLAVF 96 (390)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCcc--c--ch--hhhhhHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 334477777776666555555443 344433332222 2 22 222233344455555566666 599999988766
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC
Q 008953 113 VELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ 183 (547)
Q Consensus 113 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~ 183 (547)
.+.+. .++++. +.+..++.+-.+.|+|.+..+....+++++.-..
T Consensus 97 ~Y~ly-----iA~Nl~---------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ 141 (390)
T KOG3097|consen 97 PYALY-----IAANLE---------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQN 141 (390)
T ss_pred HHHHH-----HHhhcc---------------------hhHHhhccHHHhhccccccccccCcceecHHHHH
Confidence 55543 333211 3344567777789999999999988888776543
No 273
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=89.00 E-value=27 Score=35.18 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 477 VGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVS 515 (547)
Q Consensus 477 ~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~ 515 (547)
+...--+.+..+++.|-.+|+......++|-.+++.+.-
T Consensus 361 VNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal 399 (409)
T KOG3880|consen 361 VNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL 399 (409)
T ss_pred HHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence 444445667788899999999999888888887776653
No 274
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=88.85 E-value=1.3 Score=47.17 Aligned_cols=153 Identities=12% Similarity=-0.011 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhc-CCChh-hHHHHHHHHHHHHHHHHhhhhHHhhcccchH-HHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEM-HFSLS-NSANIVTNFIGTVFLLALLGGYLSDSFLGSF-WTMLIFGFV 113 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-g~~~~-~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~-~~~~~~~~~ 113 (547)
|++|...+..++..+....+.+.......... +.++. -.-.....|.++-.+++.+..|.- . -.+| +.+.+..+.
T Consensus 269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~-p~~~~~~l~i~s~~ 346 (437)
T TIGR00939 269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-W-PDEDSRWLPILSFL 346 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-e-eCCCccchHHHHHH
Confidence 56666666666555555443333322222221 12222 334556667777777777555431 1 1222 133333333
Q ss_pred ---HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccc
Q 008953 114 ---ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSK 190 (547)
Q Consensus 114 ---~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 190 (547)
+...+++|... +. .+.+. --.+.+..++..+++|+..|-..+....+..+..++++
T Consensus 347 R~iFIPlf~lcn~~---~~------------~~~p~-~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e----- 405 (437)
T TIGR00939 347 RVLFIPLFLLCNYP---QR------------SRLPV-FFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE----- 405 (437)
T ss_pred HHHHHHHHHHhcCC---cc------------ccCCe-eecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH-----
Confidence 33333333221 00 00000 00233445556778899999888888888888877655
Q ss_pred ccccchhhhhhHHhHhHHHHHHH
Q 008953 191 KLSSYFNAAYFAFSTGELVALTV 213 (547)
Q Consensus 191 ~r~~~~~~~~~~~~ig~~~~~~i 213 (547)
|..+-.+..++.++|-.+|..+
T Consensus 406 -~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 406 -REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777777777655
No 275
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=88.08 E-value=4.3 Score=43.34 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHH------hhcccch
Q 008953 150 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVW------VQTHSGM 223 (547)
Q Consensus 150 ~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~------l~~~~g~ 223 (547)
.+++.++...+++++|.=+..|...+.+....|+.- .+..++.+......|..++..+.+. ..+....
T Consensus 392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~ 465 (498)
T COG3104 392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIE 465 (498)
T ss_pred cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhh
Confidence 556778888999999999999999999999999764 4556676666666666666555442 2222334
Q ss_pred hhHHHHHHHHHHH
Q 008953 224 DVGFGVSAAAMAL 236 (547)
Q Consensus 224 ~~~f~~~~~~~~~ 236 (547)
...|+..+...++
T Consensus 466 ~~~F~~~g~v~i~ 478 (498)
T COG3104 466 GRVFGTIGVVAIV 478 (498)
T ss_pred hhhHHHHHHHHHH
Confidence 4456655544433
No 276
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=87.53 E-value=44 Score=35.83 Aligned_cols=170 Identities=10% Similarity=0.034 Sum_probs=103.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCC---hhhHHHHHHHHHH-HHHHHHhhhhHHhhcccchHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFS---LSNSANIVTNFIG-TVFLLALLGGYLSDSFLGSFWTMLIFG 111 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~---~~~~~~i~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~~~~ 111 (547)
++++..+.+..+|-.+.++.+.. +.+.+..+ +.....+-..+.. ++.+..++-+++.+++ -|.+++.+.+
T Consensus 26 ~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~~ 99 (509)
T COG3202 26 LKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYIIL 99 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHHH
Confidence 46677777777777666654433 33444433 4445666666666 6778889999999996 9999999888
Q ss_pred HHHHHHHHHHHHhhc-cCCCCCCCC---CCCC--CCCc----ccccccchhHHHHHHHHHHHHhcccccc-chhhhcccC
Q 008953 112 FVELSGFILLSVQAH-LPQLKPPKC---NMVT--DSEN----CEEAKGFKASIFFLALYLVAIGSGCVKP-NMIAHGADQ 180 (547)
Q Consensus 112 ~~~~i~~~l~~~~~~-~~~~~~~~~---~~~~--~~~~----~~~~~~~~~~~~~~~~~l~gig~g~~~~-~~~~~~~~~ 180 (547)
..+...++++++.-. ......|+- ++.. +-++ -.+-+.+....+++.-=+.| ....+ ..+.+..|+
T Consensus 100 ~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWg---slV~S~lFw~faNei 176 (509)
T COG3202 100 GFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWG---SLVLSLLFWQFANEI 176 (509)
T ss_pred HHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 888888888877632 011111210 0000 0001 00122233334443322222 22222 346777888
Q ss_pred CCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc
Q 008953 181 FDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH 220 (547)
Q Consensus 181 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~ 220 (547)
+..++ -.|.++.++...|++..++..+..++..+
T Consensus 177 tt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 177 TTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred hhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88777 56789999999999999998888888653
No 277
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=86.66 E-value=3.6 Score=43.84 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhc---chhhHHHHHHHHH
Q 008953 424 IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQS---LKGMQAFLTAMTY 500 (547)
Q Consensus 424 i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~---p~~~rg~~~g~~~ 500 (547)
+.+|.++.+++.+.++..... ..+.....+..++..+|..+..+..-+...|.. |.+ ||...+...
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~----------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~ 130 (433)
T PF03092_consen 62 MIIGWLLGAVSALVLALLPAS----------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVW 130 (433)
T ss_pred HHHHHHHHHHHHHHHHhcccc----------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHH
Confidence 666666666666655554211 234445566667888899999888888888765 444 778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008953 501 CSYSFGFYLSSLLVSFVNKV 520 (547)
Q Consensus 501 ~~~~~G~~lg~~i~~~l~~~ 520 (547)
.++.+|+.++..+.|.+.+.
T Consensus 131 ~~~~~G~lv~~~l~G~l~~~ 150 (433)
T PF03092_consen 131 GVRSVGSLVGSLLSGPLLDS 150 (433)
T ss_pred HHHHHHHHHHHHhhhhhhhc
Confidence 99999999999999877663
No 278
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=86.51 E-value=3.4 Score=40.36 Aligned_cols=91 Identities=9% Similarity=0.027 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH
Q 008953 419 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM 498 (547)
Q Consensus 419 ~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~ 498 (547)
+|+..+.+|.++..+|+......-.. .-...+.|.+.+...+.+.+....+........+.+|+ .||++.|+
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~~-------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgi 135 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVSG-------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGI 135 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC-------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehh
Confidence 56677889999999999877665321 11124666667666777788888888877888899985 69999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008953 499 TYCSYSFGFYLSSLLVSFV 517 (547)
Q Consensus 499 ~~~~~~~G~~lg~~i~~~l 517 (547)
.....++++.+-+.+...+
T Consensus 136 lk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 136 LKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred hhHHHHhHHHHHHHHHHHH
Confidence 9999888887666555443
No 279
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=85.35 E-value=11 Score=36.04 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHhhcch-hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 008953 457 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK-GMQAFLTAMTYC-SYSFGFYLSSLLVSFVNKV 520 (547)
Q Consensus 457 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~-~~rg~~~g~~~~-~~~~G~~lg~~i~~~l~~~ 520 (547)
+.+.++...++.|++.+...+....+..+..|+ +.|+...+.... ...+|..+++.+.+.+...
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666668889888889999999999998 778999898888 5788888888766666554
No 280
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=84.81 E-value=55 Score=34.33 Aligned_cols=59 Identities=19% Similarity=0.042 Sum_probs=48.3
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 456 LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV 514 (547)
Q Consensus 456 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~ 514 (547)
-+-++.+....++|+..|-.......++-+..|++++-.+..+..+....|-+.|.++.
T Consensus 341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 35566677778889988888888888999999999999888888888888877777654
No 281
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=84.26 E-value=37 Score=33.32 Aligned_cols=57 Identities=9% Similarity=0.000 Sum_probs=34.2
Q ss_pred cccchhhhhhHHhHhHHHHHHH--HH-Hhhc--ccchhhHHHHHHHHHHHHHHHHHHcCcee
Q 008953 192 LSSYFNAAYFAFSTGELVALTV--LV-WVQT--HSGMDVGFGVSAAAMALGLFGVVSGTLYY 248 (547)
Q Consensus 192 r~~~~~~~~~~~~ig~~~~~~i--~~-~l~~--~~g~~~~f~~~~~~~~~~l~~~~~~~~~~ 248 (547)
|+.......+..++|++++-+. .+ -..+ ...|++.+.+.+++.++-++.+....++.
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f 65 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF 65 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5566666667778888775433 22 1111 12399888887777766666665554443
No 282
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=83.13 E-value=6.3 Score=40.84 Aligned_cols=93 Identities=11% Similarity=0.064 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchh---hHHHHHHH
Q 008953 422 QRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG---MQAFLTAM 498 (547)
Q Consensus 422 ~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~---~rg~~~g~ 498 (547)
+.+.+|.++..+|.+++...... .......+...+.++.++.++|.++.=|....+..++++++ .|..+...
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~-----~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP-----PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS-----SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc-----chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHH
Confidence 45788999999999886665321 11112334567788888999999999999999999999887 45556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008953 499 TYCSYSFGFYLSSLLVSFVNK 519 (547)
Q Consensus 499 ~~~~~~~G~~lg~~i~~~l~~ 519 (547)
+.+..++|..++..+.+++.+
T Consensus 77 fY~~in~G~~~~~~~~~~i~~ 97 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQ 97 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHhhhhHhhcccchhhcc
Confidence 777889999998887777764
No 283
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.65 E-value=5.3 Score=33.08 Aligned_cols=40 Identities=23% Similarity=0.033 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHH
Q 008953 81 NFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFIL 120 (547)
Q Consensus 81 ~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l 120 (547)
.=.+...+...+.||+-|||+|.++..++.+++...+...
T Consensus 50 sefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~ 89 (116)
T COG5336 50 SEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGV 89 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3344555666778999999999999877765555444333
No 284
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=78.27 E-value=0.62 Score=47.19 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=3.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhH----HHHHHHHHHHHHHHHhhhhHHhhcccc--hHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNS----ANIVTNFIGTVFLLALLGGYLSDSFLG--SFWTMLI 109 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~----~~i~~~~~~~~~~~~~~~G~laDr~~G--r~~~~~~ 109 (547)
.|++|..++..+...+....+.+.+..-...... +..+. -.....|.++-.+++.+.++.- + - ++|.+.+
T Consensus 142 ~~~i~~~~~~i~~~f~vTl~~FP~it~~v~s~~~-~~~~~~f~pv~~fl~Fn~gD~iGR~l~~~~~--~-~~~~~~~l~~ 217 (309)
T PF01733_consen 142 LKKIWPYALSIFLVFFVTLSVFPGITSAVQSSNN-PDWSSYFVPVVLFLLFNLGDFIGRFLASWPR--W-PGPSPRWLWI 217 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhheeeeccceeeeeecccc-CCCccHHHHHHHHHHHHHHHHhcchhcceeE--e-cccccccHHH
Confidence 3555555555555544444444444222222111 11111 1345677888888888888752 2 2 3333333
Q ss_pred HHHH---HHHHHHHHHHhhc---cCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCC
Q 008953 110 FGFV---ELSGFILLSVQAH---LPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQ 183 (547)
Q Consensus 110 ~~~~---~~i~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~ 183 (547)
..+. +....++|-.... +|.+. .+.+..++..+++|+..|-..+....+..+..++
T Consensus 218 ~s~~R~~fiPlf~~cn~~p~~~~~~~~~------------------~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~ 279 (309)
T PF01733_consen 218 LSLLRFLFIPLFLLCNVQPRPRYLPVLF------------------NSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSP 279 (309)
T ss_dssp -------------------------------------------------------------------HHHH---------
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCcc------------------cchHHHHHHHHHHHHccchhhhceeeeCCCcCCH
Confidence 3332 2223333322100 01110 2334456666788999998888888888888886
Q ss_pred CCcccccccccchhhhhhHHhHhHHHHHHH
Q 008953 184 SNPKQSKKLSSYFNAAYFAFSTGELVALTV 213 (547)
Q Consensus 184 ~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i 213 (547)
++ |..+-.+..+..++|-.+|..+
T Consensus 280 ~e------~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 280 EE------RELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ------------------------------
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 66 5556556666666676666554
No 285
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=77.65 E-value=34 Score=36.06 Aligned_cols=98 Identities=10% Similarity=0.024 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccch
Q 008953 72 LSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFK 151 (547)
Q Consensus 72 ~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (547)
..-.|.+-.+..+.++++.+..|++..++ .+-.-+.++.+-...+.++...+.. .+
T Consensus 284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w-~~~~~l~l~~~S~l~a~~L~lm~~t-----------------------~~ 339 (412)
T PF01770_consen 284 SVYNGAVEAASTLLGAIAALLAGYVKVNW-DRWGELALGVFSLLQAGLLFLMSFT-----------------------GN 339 (412)
T ss_pred cccchHHHHHHHHHHHHHHHHHhHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hH
Confidence 33467888888888999999999997775 7765555554433333333322221 46
Q ss_pred hHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953 152 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA 199 (547)
Q Consensus 152 ~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 199 (547)
.+..+++.++.........+.+..-++....++. -+-.+|+.
T Consensus 340 Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~------yaLVFGiN 381 (412)
T PF01770_consen 340 IWVCYAGYIIFRSLYMFLITIASFQIAKNLSEER------YALVFGIN 381 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------eeeeeeeH
Confidence 6677777777666566666666666676666655 45555554
No 286
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=75.67 E-value=1e+02 Score=31.75 Aligned_cols=109 Identities=6% Similarity=-0.002 Sum_probs=59.2
Q ss_pred ccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHH
Q 008953 385 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ 464 (547)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 464 (547)
+.....+..++++++.+.+.| |++||+ ..+..+ ++-+++.+.-- ..+...++++
T Consensus 74 Lf~~Gf~Ss~i~g~~~G~laD----~~Grk~------~cl~~c-ily~~scl~k~---------------~~~~~~L~~G 127 (354)
T PF05631_consen 74 LFVAGFASSAIFGTFVGSLAD----RYGRKK------ACLLFC-ILYSLSCLTKH---------------SSNYPVLLLG 127 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hcCchH------HHHHHH-HHHHHHHHHHh---------------ccccHHHHHH
Confidence 344555667888888887766 444432 222222 33333333211 2367788889
Q ss_pred HHHHHHHHHHHhHHHHH-----HHHhhcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 008953 465 FLIFGLSEMFTAVGLIE-----FFYKQSLKGMQAFLTAMTY-CSYSFGFYLSSLLVSFVNK 519 (547)
Q Consensus 465 ~~l~g~g~~~~~~~~~~-----~~~~~~p~~~rg~~~g~~~-~~~~~G~~lg~~i~~~l~~ 519 (547)
-++.|++..+.+..-=+ ...+.+|++..+...+... +.+++-.+++..+..++.+
T Consensus 128 RvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~ 188 (354)
T PF05631_consen 128 RVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD 188 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 99999998888765333 3344566665555554444 3344333444444444433
No 287
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=75.39 E-value=5.6 Score=41.50 Aligned_cols=129 Identities=13% Similarity=0.041 Sum_probs=73.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhHH-HHHHHhhhhcCC---ChhhHHHHHHH-HHHHHHHHHhhhhHHhhcccchHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGN-NLITYVINEMHF---SLSNSANIVTN-FIGTVFLLALLGGYLSDSFLGSFWTMLIF 110 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~yl~~~lg~---~~~~~~~i~~~-~~~~~~~~~~~~G~laDr~~Gr~~~~~~~ 110 (547)
.+.+..-+....+..+..|.+.- ..|.+..+..+- +..-.-..... +.+...++.+...|+-++ +||+..+..
T Consensus 241 ~~~i~~k~~~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~l~i~v 318 (406)
T KOG1479|consen 241 LWDIFKKIKDLAFNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWP--DPRKLTIPV 318 (406)
T ss_pred HHHHHHHHHHHhhchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCC--CCceehHHH
Confidence 34555555555565555565553 566666654322 23334444444 778888888888888775 555544443
Q ss_pred HHHHHHHHHHHHHhhc--cCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCC
Q 008953 111 GFVELSGFILLSVQAH--LPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSN 185 (547)
Q Consensus 111 ~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~ 185 (547)
++ -.+..-+..+... .+... ++.+.++..-.++|+..|=..+....+..+..|+++
T Consensus 319 ~l-R~lfiPlF~~cn~~~~~v~~------------------~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e 376 (406)
T KOG1479|consen 319 LL-RLLFIPLFLLCNYPPLPVVF------------------ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSE 376 (406)
T ss_pred HH-HHHHHHHHHHhccCCCCcee------------------cCchHHHHHHHHHHhccchHhhheehhcCCCCChHH
Confidence 33 2222222222211 11111 233456666678899999888888888888877665
No 288
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=68.65 E-value=1.7e+02 Score=31.23 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 457 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 518 (547)
Q Consensus 457 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~ 518 (547)
+-++.++..+++|+..|........+..+.+++++|..+..+..+.-.+|-..|+.+.-.+.
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~ 432 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV 432 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666889999999999999999999999999999999999999999998888755443
No 289
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=64.51 E-value=99 Score=31.93 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=40.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 008953 455 TLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSF 505 (547)
Q Consensus 455 ~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~ 505 (547)
+.++|+.-+.++++..-..+..+....-+.+....+.-|...|++++..-+
T Consensus 323 t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~ 373 (433)
T KOG3810|consen 323 TQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALI 373 (433)
T ss_pred ccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHH
Confidence 347888999999999998888888777778777788788888887775543
No 290
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=63.80 E-value=2.2e+02 Score=30.76 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008953 460 SITPQFLIFGLSEMFTAV-GLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 520 (547)
Q Consensus 460 ~l~~~~~l~g~g~~~~~~-~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~ 520 (547)
...+.|+...+--.++.. ..|.++.|....++-.+.-++.....++|..+++.++.++.+.
T Consensus 130 ~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~ 191 (472)
T TIGR00769 130 SFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL 191 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444544443333333 7789999999999999999999999999999999999988864
No 291
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=57.00 E-value=42 Score=24.14 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 80 TNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 80 ~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.......+.....|+..|++++.++...+..++..+
T Consensus 7 g~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~ 43 (55)
T PF09527_consen 7 GFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGI 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3344555667778899999998997766655444443
No 292
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=53.90 E-value=75 Score=31.21 Aligned_cols=30 Identities=13% Similarity=0.012 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhhHHhhcccchHHHHH
Q 008953 79 VTNFIGTVFLLALLGGYLSDSFLGSFWTML 108 (547)
Q Consensus 79 ~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~ 108 (547)
..++..+..+++...|..+-.-+-||+-+.
T Consensus 147 ~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~ 176 (267)
T PF07672_consen 147 QILFVAGYFLGPFTIGLWNKTNYKRKPFIH 176 (267)
T ss_pred HHHHHHHHhhhceeeccchhhhhhhhhHHH
Confidence 344455556777777777765435555443
No 293
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=44.06 E-value=1.1e+02 Score=32.15 Aligned_cols=50 Identities=16% Similarity=0.059 Sum_probs=39.8
Q ss_pred ccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhh
Q 008953 170 KPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDV 225 (547)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~ 225 (547)
....+++.++..|+.- -|+.|++.+...|+|+-.-..+..++.+..+|..
T Consensus 387 fv~~maf~aqisdp~i------ggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~ 436 (510)
T KOG3574|consen 387 FVSGMAFHAQISDPAI------GGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQ 436 (510)
T ss_pred HHHHHHHHhhcCCccc------CccHHHHHHHHHHhcCCcHHHHHHHhcccCceee
Confidence 3445677788888776 7899999999999998888888888888777654
No 294
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=43.30 E-value=36 Score=33.43 Aligned_cols=62 Identities=13% Similarity=0.041 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHH---------hhcccchHHHH
Q 008953 44 GLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYL---------SDSFLGSFWTM 107 (547)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~l---------aDr~~Gr~~~~ 107 (547)
...+.+..+.-...+++..|+++ .|.++.+..++.....+..++..++.|.+ -||+ |||+..
T Consensus 24 vGHmlNDitAScWFTYlllfltq-iglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~-G~~~~w 94 (412)
T KOG4830|consen 24 VGHMLNDITASCWFTYLLLFLTQ-IGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRI-GRRMSW 94 (412)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHH-hcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhh-cceeee
Confidence 34555556655666778888876 78888888888899999999999999855 5675 988744
No 295
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=39.74 E-value=94 Score=25.69 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhHHhhcccchHHHHHHHHHHH
Q 008953 84 GTVFLLALLGGYLSDSFLGSFWTMLIFGFVE 114 (547)
Q Consensus 84 ~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 114 (547)
++..+...+.|...|+.+|-++.+.+.+++.
T Consensus 53 v~pil~G~~lG~WLD~~~~t~~~~tl~~lll 83 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPSPFSWTLTMLIV 83 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 3444556667777788778766555544433
No 296
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=35.41 E-value=3.7e+02 Score=29.26 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=39.7
Q ss_pred HHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcccc
Q 008953 158 ALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG 222 (547)
Q Consensus 158 ~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g 222 (547)
.-++..+..-.....++++-++..+|.. =|+.|.+.+...|+|+.--..+.-++.++..
T Consensus 411 ~~~l~sf~stvmFVai~AFharISDP~I------GGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT 469 (544)
T PF13000_consen 411 QHVLSSFMSTVMFVAIMAFHARISDPAI------GGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT 469 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccc------chHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence 3333444444556667788888888876 6888999999999887655555555555443
No 297
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=32.70 E-value=90 Score=24.32 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=24.6
Q ss_pred hhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008953 198 AAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVV 242 (547)
Q Consensus 198 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~ 242 (547)
+++....++++++. +.|++.+. .+..+++.++..++++++.+
T Consensus 12 l~~~il~~~~iisf-i~Gy~~q~--~~~~~~~~~~g~~~~~lv~v 53 (76)
T PF06645_consen 12 LMQYILIISAIISF-IVGYITQS--FSYTFYIYGAGVVLTLLVVV 53 (76)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhhee
Confidence 44555666666664 45787765 45566666555555555443
No 298
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=23.69 E-value=3.2e+02 Score=24.21 Aligned_cols=41 Identities=10% Similarity=-0.064 Sum_probs=23.1
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHH
Q 008953 68 MHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLI 109 (547)
Q Consensus 68 lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~ 109 (547)
+|++....--...+.++.-.++-+++.+++|+. ++...+.+
T Consensus 67 iGi~EkslL~sA~LvYi~PL~~l~v~~~La~~L-~~~e~~~~ 107 (150)
T COG3086 67 LGIEEKSLLKSALLVYIFPLVGLFLGAILAQYL-FFSELIVI 107 (150)
T ss_pred EccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHH
Confidence 455444443334444555556666777778875 65554443
No 299
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.61 E-value=3.4e+02 Score=22.46 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=14.5
Q ss_pred hhhHHhHhHHHHHHHHHHhhcccc
Q 008953 199 AYFAFSTGELVALTVLVWVQTHSG 222 (547)
Q Consensus 199 ~~~~~~ig~~~~~~i~~~l~~~~g 222 (547)
..+.+.+..++|..++-||..+++
T Consensus 48 IG~~~v~pil~G~~lG~WLD~~~~ 71 (100)
T TIGR02230 48 IGWSVAIPTLLGVAVGIWLDRHYP 71 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333444555566666667877776
No 300
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=21.23 E-value=4.6e+02 Score=23.50 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHH
Q 008953 152 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELV 209 (547)
Q Consensus 152 ~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 209 (547)
+..++....++|+|.-+ +.+.++.-..++++ -|+.+|+-.+-.|++-+.
T Consensus 97 ~~~~~~S~~~Fg~gllG---isYGilSaSWD~~r------~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 97 WAVLLVSLVFFGLGLLG---ISYGILSASWDPER------EGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred hHHHHHHHHHHHHHHHh---hhhhhcccccCCCC------CCCcccHHHHHHhHHHHH
Confidence 33444444445544332 23344455566665 588999988888876543
No 301
>PRK02237 hypothetical protein; Provisional
Probab=20.84 E-value=2.1e+02 Score=24.01 Aligned_cols=50 Identities=14% Similarity=0.057 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q 008953 73 SNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSV 123 (547)
Q Consensus 73 ~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~ 123 (547)
++.|=+..+|.....+.+++.+|..|+. -.-+-=.++..+..+|..+..+
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~-~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGV-RPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCc-CCChhHHHhHHHHHHhHHHhee
Confidence 4578899999999999999999999996 7666666676666666655433
Done!