Query 008953
Match_columns 547
No_of_seqs 180 out of 2236
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 15:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 5.4E-28 1.8E-32 258.7 30.4 415 33-519 9-447 (491)
2 2xut_A Proton/peptide symporte 100.0 1.2E-28 4.1E-33 266.1 19.1 436 34-520 9-467 (524)
3 3o7q_A L-fucose-proton symport 99.9 1.7E-23 5.9E-28 219.8 33.7 358 33-522 22-409 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.9 1.5E-24 5E-29 228.7 24.5 374 36-520 27-409 (451)
5 2gfp_A EMRD, multidrug resista 99.9 6.6E-23 2.3E-27 211.3 18.2 346 40-519 3-351 (375)
6 4gc0_A D-xylose-proton symport 99.9 4.7E-22 1.6E-26 212.4 19.0 154 72-239 54-215 (491)
7 2cfq_A Lactose permease; trans 99.8 2.2E-20 7.5E-25 196.0 12.5 362 37-519 7-374 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.7E-13 5.8E-18 143.8 14.4 178 36-243 251-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 3.7E-12 1.3E-16 133.1 14.4 169 37-240 258-428 (438)
10 2cfq_A Lactose permease; trans 99.3 1.3E-11 4.5E-16 129.0 12.5 176 37-244 220-399 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 3.4E-11 1.2E-15 128.0 10.5 187 37-247 283-474 (491)
12 4gc0_A D-xylose-proton symport 99.1 1.7E-10 5.9E-15 122.5 11.4 185 37-248 276-466 (491)
13 2gfp_A EMRD, multidrug resista 98.9 2.5E-10 8.6E-15 116.8 0.6 164 37-231 199-363 (375)
14 2xut_A Proton/peptide symporte 98.2 1.1E-06 3.7E-11 93.9 6.3 150 74-246 336-504 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=5.4e-28 Score=258.67 Aligned_cols=415 Identities=18% Similarity=0.269 Sum_probs=281.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-----cCCChhhHHHHHHHHHHHHHHHHhhhhHHhhc-ccchHHH
Q 008953 33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINE-----MHFSLSNSANIVTNFIGTVFLLALLGGYLSDS-FLGSFWT 106 (547)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr-~~Gr~~~ 106 (547)
++++|.++.+.+..++..+.+|++..+++.|++++ +|.+..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 44568889999999999999999999999999988 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCc
Q 008953 107 MLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNP 186 (547)
Q Consensus 107 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~ 186 (547)
+.++.++..++.++++++. +...++++|++.|++.+...+...+++.|.+|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 142 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF-------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC-------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT
T ss_pred HHHHHHHHHHHHHHHHHhh-------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc
Confidence 9999999999999888763 345688999999999999999999999999998763
Q ss_pred ccccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeecc---CCCCC-CchhHH
Q 008953 187 KQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNK---RPQGS-IFTPIA 262 (547)
Q Consensus 187 ~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~-~~~~~~ 262 (547)
+ |++++++++...++|..++|.+++++.++.||++.|++.++..+++++.++...++...+ +++.+ +..+..
T Consensus 143 ~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4aps_A 143 R----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218 (491)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred c----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence 2 667888899999999999999999999999999999998776666665554433322211 11111 111111
Q ss_pred HHHHH------------HHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhcc-ccCCCCCCCCCcccc
Q 008953 263 QVFVA------------AMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKV-EDGTNKKESPWRLCT 329 (547)
Q Consensus 263 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 329 (547)
+.... .......... .++.. .......... ..... ..|+...
T Consensus 219 ~~~~~~g~~l~~~~~~~~~~~~~~~~~--------------------~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~ 273 (491)
T 4aps_A 219 PLLVKVSLAVAGFIAIIVVMNLVGWNS--------------------LPAYI--NLLTIVAIAIPVFYFA---WMISSVK 273 (491)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHSSCC--------------------TTHHH--HHHHHHHHHHHHHHHH---HHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcc--------------------cccch--hhhhHHHHHHHHHHHH---HHhhccc
Confidence 10000 0000000000 00000 0000000000 00000 0010000
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcce-eCcccccccchhhHHHHHhhhhhhhhhhh
Q 008953 330 VTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFH-VPPASLQSIPYIMLVILVPLYDKFFVPFA 408 (547)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 408 (547)
....++++......++.....++..+.+..+....+... .. +.+ ...+.+.....+..++..++.+++.++
T Consensus 274 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-- 345 (491)
T 4aps_A 274 -VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE---RV--DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-- 345 (491)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH---SC--CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH--
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH---Hh--ccCccCHHHHhccchHHHHHHHHHHHHHHHH--
Confidence 111233344444555666677777777666543322111 11 111 345666677777778888888776654
Q ss_pred hhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 008953 409 RKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSL 488 (547)
Q Consensus 409 ~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p 488 (547)
.++|+ ....+.+.+|.++.++++++........ +.....+.+++++..++.+++.+...+..++++.|.+|
T Consensus 346 --~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 416 (491)
T 4aps_A 346 --WKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY-----GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP 416 (491)
T ss_dssp --TTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC-----CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred --HhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 44443 2455667889999988888777653210 11124567778888999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 489 KGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 519 (547)
Q Consensus 489 ~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~ 519 (547)
++.||+++|+.++...+|+.+++.+.+++.+
T Consensus 417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998876654
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=1.2e-28 Score=266.07 Aligned_cols=436 Identities=20% Similarity=0.321 Sum_probs=273.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC------CChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHH
Q 008953 34 GGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMH------FSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTM 107 (547)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~ 107 (547)
+++|.++.+.+..++..+.+|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 345677888999999999999999999999999999 99999999999999999999999999999944999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcc
Q 008953 108 LIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK 187 (547)
Q Consensus 108 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~ 187 (547)
.++.++..++.++++++. .+...++++|++.|++.+...+...+++.|.+|+++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 144 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFE------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS 144 (524)
T ss_dssp HHHHHHHHHHHHHHHHTS------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT
T ss_pred HHHHHHHHHHHHHHHHhc------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH
Confidence 999999999998888762 14667889999999999999999999999999988711
Q ss_pred cccccccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHH
Q 008953 188 QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVA 267 (547)
Q Consensus 188 ~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (547)
+ +.+.+++++...++|.+++|.+++++.+..||++.|++.++..+++++.++..+++.+.+++++++..+..+.+..
T Consensus 145 ~---~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 145 L---AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 1 1344555888999999999999999998889999999887776666655554443332222222221111111111
Q ss_pred HHhhhcccCCCCccc----------ccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCC-------ccccc
Q 008953 268 AMLKRKQICPSNPQM----------LHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPW-------RLCTV 330 (547)
Q Consensus 268 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 330 (547)
..+++....+ .... ....+..+. .... ............ ...+.+| ...+.
T Consensus 222 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 289 (524)
T 2xut_A 222 ALLTKVEGKG-NIGLVLALIGGVSAAYALVNIPT---LGIV---AGLCCAMVLVMG-----FVGAGASLQLERARKSHPD 289 (524)
T ss_dssp -----CTTHH-HHHHHHHHHHHHHHHHTGGGTTT---TCSS---HHHHHHHHHHHH-----HHHTGGGTHHHHSCCSCCS
T ss_pred HHhhhhcccC-ccchhhhhhhhhhhhhhhcccch---hhhh---hhhhhhhhhhhc-----ccccchhhHHhhhhccccH
Confidence 1111100000 0000 000000000 0000 000000000000 0000011 00011
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhh
Q 008953 331 TQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARK 410 (547)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r 410 (547)
...+++++.+....++.....++..+.+..+.+..+...++.. .+ .+.+.+...+.+..++..++.+++..+..+|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (524)
T 2xut_A 290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIER 365 (524)
T ss_dssp SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHh
Confidence 1112223333333344444455555555555444433332221 10 2455666777788888888988876665555
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchh
Q 008953 411 YTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG 490 (547)
Q Consensus 411 ~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~ 490 (547)
.++| .++.+.+.+|+++.++++++++..+... +.....+.+++++.+++.+++++...+..++++.|.+|++
T Consensus 366 ~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~ 437 (524)
T 2xut_A 366 MGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM-----DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA 437 (524)
T ss_dssp --------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT
T ss_pred cCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 5433 2455667788888888887766542110 1112346777888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008953 491 MQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 520 (547)
Q Consensus 491 ~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~ 520 (547)
.||+++|++++...+|+.+++.+.+.+.+.
T Consensus 438 ~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 438 MKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp CCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999987663
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=1.7e-23 Score=219.82 Aligned_cols=358 Identities=11% Similarity=0.040 Sum_probs=235.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHH
Q 008953 33 HGGMKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGF 112 (547)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 112 (547)
+++++.++.+.+..+...+........+ +++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 3445666666666666666666554444 457788999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHH---HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccc
Q 008953 113 VELSGFILL---SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQS 189 (547)
Q Consensus 113 ~~~i~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~ 189 (547)
+..++.+++ ..+ .+...++++|++.|++.+...+...+++.|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 999999888 443 456779999999999999999999999999999988
Q ss_pred cccccchhhhhhHHhHhHHHHHHHHHHhh-cccc-------------------------hhhHHHHHHHHHHHHHHHHHH
Q 008953 190 KKLSSYFNAAYFAFSTGELVALTVLVWVQ-THSG-------------------------MDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 190 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~l~~~~~ 243 (547)
|++.+++.+...++|..++|.+++++. +..+ ||+.|++.++..++..+.++.
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 5554 999998766555544444433
Q ss_pred cC-ceeeccCCCCCCchhHHHHHHHHHhhhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCC
Q 008953 244 GT-LYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKE 322 (547)
Q Consensus 244 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (547)
.+ ++.+++++++++. ......+.+
T Consensus 229 ~~~p~~~~~~~~~~~~-----------------------------------------~~~~~~~~~-------------- 253 (438)
T 3o7q_A 229 TKFPALQSDNHSDAKQ-----------------------------------------GSFSASLSR-------------- 253 (438)
T ss_dssp CCCCCCTTTCCCCSST-----------------------------------------TSHHHHHHH--------------
T ss_pred HcCCcccccccccccc-----------------------------------------cchhhhHHH--------------
Confidence 21 1110000000000 000000000
Q ss_pred CCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhh
Q 008953 323 SPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDK 402 (547)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (547)
..++++.....+..++..........+.+.++..+....+. ...+.......+..++..++..+
T Consensus 254 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 254 ---------LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp ---------HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111111112222222222222333321211101110 01122333334445555555555
Q ss_pred hhhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHH
Q 008953 403 FFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEF 482 (547)
Q Consensus 403 ~~~~~~~r~~~r~~~~~~~~~i~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~ 482 (547)
+.+ |. ++++.+.++.++.+++++...... +. +.+...++.+++.+...|..+.+
T Consensus 318 l~~----r~-------~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~g~~~~~~~~~~~~~ 371 (438)
T 3o7q_A 318 LIS----RF-------APHKVLAAYALIAMALCLISAFAG--------------GH-VGLIALTLCSAFMSIQYPTIFSL 371 (438)
T ss_dssp HHH----HS-------CHHHHHHHHHHHHHHHHHHHHHCC--------------HH-HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHH----Hh-------cchHHHHHHHHHHHHHHHHHHHcC--------------Cc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 43 233557777777777766655531 22 33445578888999899999999
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008953 483 FYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTS 522 (547)
Q Consensus 483 ~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~l~~~~~ 522 (547)
..|..|++ +++++++.. .+.+|+.+++.+.+.+.+..+
T Consensus 372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99999977 999999887 677999999999999988654
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.93 E-value=1.5e-24 Score=228.74 Aligned_cols=374 Identities=9% Similarity=-0.059 Sum_probs=237.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
++.++.+.+..+...+..+.....++.+ .+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 4556666666666766666666666544 4567 9999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHH----hhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953 116 SGFILLSV----QAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK 191 (547)
Q Consensus 116 i~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 191 (547)
++.+++++ +. +...++++|++.|++.+...+...+++.|.+|+++
T Consensus 104 ~~~~~~~~~~~~~~-------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------ 152 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------ 152 (451)
T ss_dssp HHHHHHHHCHHHHS-------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------
T ss_pred HHHHHHHhhhhccc-------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------
Confidence 99999988 53 34558889999999999999999999999999887
Q ss_pred cccchhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHh
Q 008953 192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAML 270 (547)
Q Consensus 192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (547)
|++++++.+...++|.+++|.+++++.+..| ||+.|++.++..++..+..+...++.+..+...+. .
T Consensus 153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------- 220 (451)
T 1pw4_A 153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E----------- 220 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-----------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h-----------
Confidence 9999999999999999999999999888888 99999988776655544433332222111100000 0
Q ss_pred hhcccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccc-cchhHHHHHHHHhHHHHHHHH
Q 008953 271 KRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLC-TVTQVEQVKVLISVVPIFACT 349 (547)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 349 (547)
+...+ +.++ ..+. . +.+..++.. ..+..++++.+...+..++..
T Consensus 221 ----------~~~~~--~~~~---~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (451)
T 1pw4_A 221 ----------EYKND--YPDD---YNEK-A-------------------EQELTAKQIFMQYVLPNKLLWYIAIANVFVY 265 (451)
T ss_dssp ----------TTCCC--------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ----------hhccc--cccc---chhh-h-------------------hcccccccchHHHHHcCHHHHHHHHHHHHHH
Confidence 00000 0000 0000 0 000000000 000011111111122222222
Q ss_pred HHHHHHHhhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHH
Q 008953 350 IIFNTILAQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL 428 (547)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~ 428 (547)
..+.......+.+. .... +++. ..+.+.....++.++..++..++.+ |..+ ++++.+.++.
T Consensus 266 ~~~~~~~~~~~~~~-------~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----~~~~-----~~~~~~~~~~ 327 (451)
T 1pw4_A 266 LLRYGILDWSPTYL-------KEVK--HFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFR-----GNRGATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHHB-------TTBS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTST-----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc-----CCchhHHHHH
Confidence 22222222222211 1111 1111 1123334444555555555555543 4300 1123344454
Q ss_pred HHHH-HHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHH-H
Q 008953 429 FLAT-FSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSF-G 506 (547)
Q Consensus 429 ~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~-G 506 (547)
.+.. ++++.+.... ..+.+.+.+..++.|++.+...+....+..|.+|++.||+++|+.+....+ |
T Consensus 328 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 395 (451)
T 1pw4_A 328 MTLVTIATIVYWMNP------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 395 (451)
T ss_dssp HHHHHHHHHHTTSCC------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHH
Confidence 4444 5555444321 135566677778888888888888899999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHh
Q 008953 507 FYLSSLLVSFVNKV 520 (547)
Q Consensus 507 ~~lg~~i~~~l~~~ 520 (547)
+.+++.+.+.+.+.
T Consensus 396 ~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 396 SVAASAIVGYTVDF 409 (451)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988774
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=6.6e-23 Score=211.28 Aligned_cols=346 Identities=9% Similarity=0.006 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHH
Q 008953 40 VFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFI 119 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 119 (547)
+.+++..++..+......+.+|.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445566666666666666666654 567999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhh
Q 008953 120 LLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA 199 (547)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 199 (547)
++.++ ++...+++.|++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 81 ~~~~~-------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 129 (375)
T 2gfp_A 81 VAVTT-------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLL 129 (375)
T ss_dssp HHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHH
T ss_pred HHHHh-------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHH
Confidence 88886 356778899999999999999999999999999887 99999999
Q ss_pred hhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhcccCCCC
Q 008953 200 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSN 279 (547)
Q Consensus 200 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (547)
+...++|..++|.+++++.++.|||+.|++.++..++..+......++. ++++++ +
T Consensus 130 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------------~ 185 (375)
T 2gfp_A 130 NMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET---RPVDAP---------------------R 185 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCC---STTTCC---------------------C
T ss_pred HHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCccc---CCCCcc---------------------c
Confidence 9999999999999999999988999999887665544433222211111 110000 0
Q ss_pred cccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 008953 280 PQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQL 359 (547)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (547)
++ ...+++ +..++++.....+..++............
T Consensus 186 ----------~~-----------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
T 2gfp_A 186 ----------TR-----------------------------LLTSYK----TLFGNSGFNCYLLMLIGGLAGIAAFEACS 222 (375)
T ss_dssp ----------CC-----------------------------TTTCST----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----------cc-----------------------------HHHHHH----HHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000010 11122222222222222222222222222
Q ss_pred hhhhhhhhhhccccCCCcceeCcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHH-HHHHHH--
Q 008953 360 QTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFL-ATFSMI-- 436 (547)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l-~~i~~~-- 436 (547)
+.+.... ...+.. ..+.+.....++.++..++.+++ .+|.+ + ++..+..+ ...+..
T Consensus 223 ~~~~~~~-~g~~~~-------~~g~~~~~~~~~~~~~~~~~~~l----~~r~~-------~--~~~~~~~~~~~~~~~~~ 281 (375)
T 2gfp_A 223 GVLMGAV-LGLSSM-------TVSILFILPIPAAFFGAWFAGRP----NKRFS-------T--LMWQSVICCLLAGLLMW 281 (375)
T ss_dssp SCSSHHH-HHHHHH-------HHHHHHHTHHHHHHHHHHHHHTT----TTHHH-------H--HHHHHHHHHHHTSSSSS
T ss_pred HHHHHHH-hCCCHH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------H--HHHHHHHHHHHHHHHHH
Confidence 2222110 111111 11223333444445555554433 22321 1 24444433 222222
Q ss_pred HHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008953 437 SAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSF 516 (547)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~G~~lg~~i~~~ 516 (547)
...... ..+.+.+++..++.+++.+...+....+..|..| ++||++.|+.+..+.+|..+++.+.+.
T Consensus 282 ~~~~~~------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 282 IPDWFG------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp HHHHHH------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred HHhhhc------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 1245556677788999999999999999999999 899999999999999999999988887
Q ss_pred HHH
Q 008953 517 VNK 519 (547)
Q Consensus 517 l~~ 519 (547)
+.+
T Consensus 349 l~~ 351 (375)
T 2gfp_A 349 LPQ 351 (375)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.88 E-value=4.7e-22 Score=212.35 Aligned_cols=154 Identities=16% Similarity=0.036 Sum_probs=115.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccch
Q 008953 72 LSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFK 151 (547)
Q Consensus 72 ~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (547)
..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++........ ........-..+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~-------~~~~~~~~~a~~ 125 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSIN-------PDNTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS-------SSSSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-------chhHHHHHHhhh
Confidence 34568889999999999999999999997 9999999999999999999986421000000 000000111256
Q ss_pred hHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhcc--------cch
Q 008953 152 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH--------SGM 223 (547)
Q Consensus 152 ~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~--------~g~ 223 (547)
...++++|+++|+|.|+..+..+++++|..|++. |++..+..+....+|..+++.++..+... .+|
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 7889999999999999999999999999999887 89999999999999999998887665432 346
Q ss_pred hhHHHHHHHHHHHHHH
Q 008953 224 DVGFGVSAAAMALGLF 239 (547)
Q Consensus 224 ~~~f~~~~~~~~~~l~ 239 (547)
++.+.+..+..++.++
T Consensus 200 ~~~~~~~~~~~~~~~~ 215 (491)
T 4gc0_A 200 RYMFASECIPALLFLM 215 (491)
T ss_dssp HHHHHTTHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhh
Confidence 6666655444443333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.82 E-value=2.2e-20 Score=195.98 Aligned_cols=362 Identities=10% Similarity=-0.003 Sum_probs=202.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
|.++.+....++..+.+..+.+++|.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 6677777777777777777778999999999999999999999999999999999999999997 999999988776654
Q ss_pred HHHHH---HHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 117 GFILL---SVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 117 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
+...+ ..+..+ ...+...+.+.+++.+...+...+...+..++. +++ ++
T Consensus 86 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~---~~ 137 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL------------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV-SRR---SN 137 (417)
T ss_dssp CHHHHHHHTHHHHH------------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH-HHH---HT
T ss_pred HHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-hhh---cc
Confidence 32211 111100 000123344444444433333333333333221 111 56
Q ss_pred cchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCceeeccCCCCCCchhHHHHHHHHHhhhc
Q 008953 194 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRK 273 (547)
Q Consensus 194 ~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (547)
..++..+...++|..++|.+++++.+ .+|++.|++.++..++.++..+..+++. ++..+.
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------- 197 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA---PSSATV---------------- 197 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC---SCSSCS----------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc---cccccc----------------
Confidence 66777777789999999999999886 5799988876544333322222111110 000000
Q ss_pred ccCCCCcccccccCCCCCCCCCCccccccchhHhhhhhhccccCCCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHH
Q 008953 274 QICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFN 353 (547)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (547)
.+. .++ +..+.+ ..+.. +..++++ .+............+
T Consensus 198 ---~~~---------~~~-----~~~~~~---~~~~~--------------------~~~~~~~-~~~~~~~~~~~~~~~ 236 (417)
T 2cfq_A 198 ---ANA---------VGA-----NHSAFS---LKLAL--------------------ELFRQPK-LWFLSLYVIGVSCTY 236 (417)
T ss_dssp ---SSS---------SSS-----CCCCCC---HHHHH--------------------HHTTCHH-HHHHHHHHHHHHHHH
T ss_pred ---ccc---------ccc-----cccccc---HHHHH--------------------HHhcCCc-hhhHHHHHHHHHHHH
Confidence 000 000 000000 00000 0001111 111111111111122
Q ss_pred HHH-hhhhhhhhhhhhhccccCCCccee-CcccccccchhhHHHHHhhhhhhhhhhhhhccCCCCCCChhHHHHHHHHHH
Q 008953 354 TIL-AQLQTFSVQQGSAMNNKLTKNFHV-PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLA 431 (547)
Q Consensus 354 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~r~~~~~~~~~i~~g~~l~ 431 (547)
..+ .+.+.++..+ .... +.+. ..+....++.+...+...+..++.| |.+ +++.+..+.++.
T Consensus 237 ~~~~~~~~~~~~~~---~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g-------~~~~l~~~~~~~ 299 (417)
T 2cfq_A 237 DVFDQQFANFFTSF---FATG---EQGTRVFGYVTTMGELLNASIMFFAPLIIN----RIG-------GKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHT---SSSH---HHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHC-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---Hhcc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHH----Hhc-------HHHHHHHHHHHH
Confidence 222 2222222111 1100 0000 0112223333344444445555544 432 234466677777
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhcchhhHHHHHHH-HHHHHHHHHHHH
Q 008953 432 TFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM-TYCSYSFGFYLS 510 (547)
Q Consensus 432 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~~~~~~G~~lg 510 (547)
+++++..+.. .+.+.+++..++.+++.....+..+.++.|..|++.||++.++ ++..+++|+.++
T Consensus 300 ~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 300 SVRIIGSSFA--------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp HHHHHHHTTC--------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHh--------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence 6665554432 2445555566677777777777788999999999999999998 588899999999
Q ss_pred HHHHHHHHH
Q 008953 511 SLLVSFVNK 519 (547)
Q Consensus 511 ~~i~~~l~~ 519 (547)
|.+.+++.+
T Consensus 366 p~l~G~l~~ 374 (417)
T 2cfq_A 366 SVLAGNMYE 374 (417)
T ss_dssp THHHHTHHH
T ss_pred hhhHHHHHH
Confidence 999997765
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.49 E-value=1.7e-13 Score=143.82 Aligned_cols=178 Identities=14% Similarity=0.077 Sum_probs=147.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhccc--chHHHHHHHHHH
Q 008953 36 MKAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFL--GSFWTMLIFGFV 113 (547)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~--Gr~~~~~~~~~~ 113 (547)
.+.++.+++..++..+..+.+..++|.|+++.+|++..+++++.+...++..++.++.|+++|| + |||+.+.++.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 4678888888888999999999999999998899999999999999999999999999999999 6 889888877666
Q ss_pred HH-HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCccccccc
Q 008953 114 EL-SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKL 192 (547)
Q Consensus 114 ~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 192 (547)
.. ++.+++....+ .+...+.+..++.|++.+...+...+++.|.+|+++ |
T Consensus 330 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 380 (451)
T 1pw4_A 330 LVTIATIVYWMNPA-----------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A 380 (451)
T ss_dssp HHHHHHHHTTSCCT-----------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H
T ss_pred HHHHHHHHHHHhcc-----------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------h
Confidence 55 45444433210 234556666777888888888888899999999887 9
Q ss_pred ccchhhhhhHHhH-hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008953 193 SSYFNAAYFAFST-GELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 243 (547)
Q Consensus 193 ~~~~~~~~~~~~i-g~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~ 243 (547)
++++++++...++ |..++|.+.|++.+..||+..|++.++..+++.+..+.
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999877766666555444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.37 E-value=3.7e-12 Score=133.09 Aligned_cols=169 Identities=15% Similarity=0.129 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHH-hhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITY-VINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVEL 115 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 115 (547)
+.++..++..++.....+.+..+++.| +++.+|++..+++.+.+.+.++..++.+++|+++||+ |||+.+.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 567777777788888888888999999 8888899999999999999999999999999999996 99999999988888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
++.+++.... +.. ..+..++.+++.+...|...++..|.+|++ ++.+
T Consensus 337 ~~~~~~~~~~-------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~ 383 (438)
T 3o7q_A 337 ALCLISAFAG-------------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYG 383 (438)
T ss_dssp HHHHHHHHCC-------------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHH
T ss_pred HHHHHHHHcC-------------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccch
Confidence 7777766642 222 233346778888888888889889988854 3344
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMALGLFG 240 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~l~~ 240 (547)
.++.. ...+|..++|.+.|++.+..| ++..|++.+++.++.++.
T Consensus 384 ~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 384 SSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 44443 456899999999999999999 999998765554444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.28 E-value=1.3e-11 Score=128.95 Aligned_cols=176 Identities=9% Similarity=-0.081 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCC---ChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHF---SLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV 113 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 113 (547)
+.++...+..+.....++....++|.|+.+.++. +....+...+...++..++.++.|+++||+ |||+++.++.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 4455555444444455555557788898776653 234456667777777888999999999996 999999888777
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccc
Q 008953 114 ELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLS 193 (547)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 193 (547)
..++.+++++. .+...+++..++.+++.+...+...++..|.+|++. |+
T Consensus 299 ~~~~~~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 347 (417)
T 2cfq_A 299 MSVRIIGSSFA-------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SA 347 (417)
T ss_dssp HHHHHHHHTTC-------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HH
T ss_pred HHHHHHHHHHh-------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HH
Confidence 77665555443 123344455555666655555666788999999776 88
Q ss_pred cchhh-hhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHc
Q 008953 194 SYFNA-AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSG 244 (547)
Q Consensus 194 ~~~~~-~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~ 244 (547)
++++. ++...++|..++|.++|++.++.|++..|.+.++..+++.+..+..
T Consensus 348 ~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 348 TIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 88888 4777889999999999999988888888888777766666555443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.20 E-value=3.4e-11 Score=127.99 Aligned_cols=187 Identities=9% Similarity=-0.030 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHH-----HHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTML-----IFG 111 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-----~~~ 111 (547)
...+.+.+..++....++....+++.|..+.++.+..+.+.+.....+...++.++.|+++||+ |||+... ++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHH
Confidence 3455555566666677777778899999988888877788888888889999999999999996 9986554 566
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccc
Q 008953 112 FVELSGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKK 191 (547)
Q Consensus 112 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 191 (547)
++..++.+++........ .....+...+.+..++.+++.+...+...+++.|.+|++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------ 419 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYG----------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------ 419 (491)
T ss_dssp HHHHHHHTTTHHHHHHCC----------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------
T ss_pred HHHHHHHHHHHHHHHhcC----------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------
Confidence 666666555544321000 0011234556667778899999988999999999999998
Q ss_pred cccchhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCce
Q 008953 192 LSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLY 247 (547)
Q Consensus 192 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~l~~~~~~~~~ 247 (547)
|+++.++++...++|..++|.+.+++.+. ++.+.|.+.++..+++.+..+...++
T Consensus 420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888764 66667777666666655555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.12 E-value=1.7e-10 Score=122.48 Aligned_cols=185 Identities=11% Similarity=-0.039 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHHHHH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFVELS 116 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 116 (547)
+.........++..+..+....+..+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3444444445555444444444455566667888888888888888888999999999999996 999999998888777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccch
Q 008953 117 GFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 196 (547)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 196 (547)
+.+.++....... ........+..+..+++. ...+....+.+|.+|.+. |+++.
T Consensus 355 ~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~ 408 (491)
T 4gc0_A 355 GMFSLGTAFYTQA-------------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKAL 408 (491)
T ss_dssp HHHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHH
T ss_pred HHHHHHHHHhccc-------------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHH
Confidence 7766655432111 011112222222222222 334666788999999998 99999
Q ss_pred hhhhhHHhHhHHHHHHHHHHhhc------ccchhhHHHHHHHHHHHHHHHHHHcCcee
Q 008953 197 NAAYFAFSTGELVALTVLVWVQT------HSGMDVGFGVSAAAMALGLFGVVSGTLYY 248 (547)
Q Consensus 197 ~~~~~~~~ig~~~~~~i~~~l~~------~~g~~~~f~~~~~~~~~~l~~~~~~~~~~ 248 (547)
++.+....+++.+++.+.+.+.+ ..++...|++.++..+++.+..++..|+.
T Consensus 409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 99999999999998888776643 23455667777766666666655544443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.88 E-value=2.5e-10 Score=116.81 Aligned_cols=164 Identities=13% Similarity=0.041 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHhhhhHHhhcccchHHHHHHHHHH-HH
Q 008953 37 KAAVFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSNSANIVTNFIGTVFLLALLGGYLSDSFLGSFWTMLIFGFV-EL 115 (547)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~~~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~-~~ 115 (547)
|.++...+..++.....+....+.|.|+++.+|.++.+++.+.+...++..++.++.|+++||+ |++ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 5677778888888888888889999999988999999999999999999999999999999996 873 2233222 22
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccc
Q 008953 116 SGFILLSVQAHLPQLKPPKCNMVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSY 195 (547)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 195 (547)
.+..+...... ...+...+++..++.+++.+...+...++..|.+| ++ |+++
T Consensus 276 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~ 327 (375)
T 2gfp_A 276 AGLLMWIPDWF---------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTA 327 (375)
T ss_dssp TSSSSSHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHH
T ss_pred HHHHHHHHhhh---------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchH
Confidence 22221111100 00234456667778889999999999999999987 55 8999
Q ss_pred hhhhhhHHhHhHHHHHHHHHHhhcccchhhHHHHHH
Q 008953 196 FNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA 231 (547)
Q Consensus 196 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~ 231 (547)
+++.+...++|..++|.+.+.+.+..+++..+++.+
T Consensus 328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 328 GALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999988777887776643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.21 E-value=1.1e-06 Score=93.89 Aligned_cols=150 Identities=13% Similarity=0.038 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHh----hcccch----HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccc
Q 008953 74 NSANIVTNFIGTVFLLALLGGYLS----DSFLGS----FWTMLIFGFVELSGFILLSVQAHLPQLKPPKCNMVTDSENCE 145 (547)
Q Consensus 74 ~~~~i~~~~~~~~~~~~~~~G~la----Dr~~Gr----~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (547)
..+.+.....++..+..++.+++. ||. |+ ++.+.++.++..++.+++........
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---------------- 398 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMD---------------- 398 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT----------------
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 355555555555666667777664 443 43 24555666666666555544311000
Q ss_pred ccccchhHHHHHHHHHHHHhccccccchhhhcccCCCCCCcccccccccchhhhhhHHhHhHHHHHHHHHHhhccc--ch
Q 008953 146 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS--GM 223 (547)
Q Consensus 146 ~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~--g~ 223 (547)
.....+...+++..++.|++.+...+...++..|.+|++. |++++++++...++|..++|.+.+++.+.. +|
T Consensus 399 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~ 472 (524)
T 2xut_A 399 GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQ 472 (524)
T ss_dssp TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 0001234456667788899999989999999999999888 999999999999999999999999988743 23
Q ss_pred ---------hhHHHHHHHHHHHHHHHHHHcCc
Q 008953 224 ---------DVGFGVSAAAMALGLFGVVSGTL 246 (547)
Q Consensus 224 ---------~~~f~~~~~~~~~~l~~~~~~~~ 246 (547)
+..|++.++..+++.+.++...+
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 473 IVQTGMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22355555555555554444333
Done!