Query 008954
Match_columns 547
No_of_seqs 650 out of 5908
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 18:37:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1954 Endocytosis/signaling 100.0 5.6E-85 1.2E-89 630.1 37.6 388 155-546 14-401 (532)
2 COG1159 Era GTPase [General fu 100.0 9.3E-39 2E-43 307.0 -6.6 229 200-479 7-257 (298)
3 COG0486 ThdF Predicted GTPase 100.0 1.7E-33 3.7E-38 285.8 -3.7 318 21-405 6-366 (454)
4 TIGR00436 era GTP-binding prot 100.0 6.3E-30 1.4E-34 254.7 0.2 227 201-479 2-249 (270)
5 PRK00089 era GTPase Era; Revie 99.9 4.4E-29 9.5E-34 251.9 1.4 228 200-479 6-254 (292)
6 PRK15494 era GTPase Era; Provi 99.9 2.6E-28 5.7E-33 249.8 -1.3 227 201-479 54-301 (339)
7 PRK05291 trmE tRNA modificatio 99.9 3.6E-27 7.8E-32 249.8 -4.1 313 21-405 6-360 (449)
8 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.1E-26 2.5E-31 244.5 -1.5 235 77-367 68-325 (442)
9 KOG1423 Ras-like GTPase ERA [C 99.9 8.5E-26 1.8E-30 215.5 0.3 235 200-479 73-356 (379)
10 KOG1191 Mitochondrial GTPase [ 99.9 6.6E-23 1.4E-27 207.8 3.9 219 96-367 165-404 (531)
11 COG1160 Predicted GTPases [Gen 99.8 1.5E-20 3.2E-25 191.2 14.9 162 197-405 176-341 (444)
12 COG1160 Predicted GTPases [Gen 99.8 5.8E-20 1.3E-24 186.9 12.3 152 200-405 4-155 (444)
13 PF02421 FeoB_N: Ferrous iron 99.8 3E-20 6.4E-25 167.1 2.9 148 201-405 2-151 (156)
14 PRK09866 hypothetical protein; 99.7 6.5E-17 1.4E-21 170.9 18.3 195 200-405 70-343 (741)
15 PRK12298 obgE GTPase CgtA; Rev 99.7 1.9E-17 4.1E-22 171.9 11.4 169 200-418 160-341 (390)
16 TIGR03598 GTPase_YsxC ribosome 99.7 3.8E-16 8.3E-21 145.9 17.4 159 198-404 17-179 (179)
17 PRK00093 GTP-binding protein D 99.7 2.6E-16 5.6E-21 167.8 17.2 161 198-405 172-334 (435)
18 cd04166 CysN_ATPS CysN_ATPS su 99.7 4E-16 8.6E-21 149.4 15.4 189 201-431 1-205 (208)
19 TIGR03156 GTP_HflX GTP-binding 99.7 4.1E-17 9E-22 167.5 8.7 150 198-405 188-342 (351)
20 PRK03003 GTP-binding protein D 99.7 3E-16 6.6E-21 168.3 15.6 160 199-405 211-372 (472)
21 COG0218 Predicted GTPase [Gene 99.7 7.5E-16 1.6E-20 141.4 15.5 156 198-405 23-187 (200)
22 PF00350 Dynamin_N: Dynamin fa 99.7 1.8E-16 3.9E-21 146.4 10.0 152 202-362 1-168 (168)
23 TIGR03594 GTPase_EngA ribosome 99.7 8.6E-16 1.9E-20 163.6 16.1 160 199-405 172-334 (429)
24 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.6E-15 3.5E-20 143.2 14.5 167 200-405 3-173 (195)
25 PF01926 MMR_HSR1: 50S ribosom 99.7 5.3E-16 1.2E-20 134.2 10.0 116 201-361 1-116 (116)
26 PRK09518 bifunctional cytidyla 99.6 2.1E-15 4.5E-20 169.4 16.2 160 199-405 450-611 (712)
27 cd04163 Era Era subfamily. Er 99.6 2.3E-15 4.9E-20 137.6 13.6 156 199-405 3-159 (168)
28 cd01898 Obg Obg subfamily. Th 99.6 2.4E-15 5.1E-20 138.9 12.5 154 201-405 2-161 (170)
29 PF00009 GTP_EFTU: Elongation 99.6 4.3E-16 9.2E-21 146.8 6.9 104 288-404 70-176 (188)
30 cd01895 EngA2 EngA2 subfamily. 99.6 5.2E-15 1.1E-19 136.4 14.0 159 200-405 3-165 (174)
31 COG1084 Predicted GTPase [Gene 99.6 5.3E-15 1.2E-19 144.3 14.2 131 198-375 167-303 (346)
32 cd00881 GTP_translation_factor 99.6 4.1E-15 8.9E-20 139.5 12.9 166 201-405 1-177 (189)
33 cd04171 SelB SelB subfamily. 99.6 4.1E-15 8.8E-20 136.1 12.1 152 201-405 2-156 (164)
34 PRK12299 obgE GTPase CgtA; Rev 99.6 3.5E-15 7.6E-20 152.0 12.6 155 200-405 159-318 (335)
35 PRK03003 GTP-binding protein D 99.6 4.7E-15 1E-19 159.1 14.2 152 199-405 38-189 (472)
36 cd01894 EngA1 EngA1 subfamily. 99.6 3.2E-15 6.9E-20 135.7 10.1 148 203-405 1-148 (157)
37 TIGR03594 GTPase_EngA ribosome 99.6 3.9E-15 8.5E-20 158.5 12.4 150 201-405 1-150 (429)
38 cd01897 NOG NOG1 is a nucleola 99.6 8.3E-15 1.8E-19 135.0 12.8 154 200-405 1-158 (168)
39 PF12763 EF-hand_4: Cytoskelet 99.6 1.7E-15 3.6E-20 126.5 7.1 94 10-110 3-98 (104)
40 cd04164 trmE TrmE (MnmE, ThdF, 99.6 4.6E-15 9.9E-20 134.6 10.4 147 199-405 1-147 (157)
41 TIGR02729 Obg_CgtA Obg family 99.6 7.9E-15 1.7E-19 149.3 12.9 154 200-405 158-319 (329)
42 PRK12296 obgE GTPase CgtA; Rev 99.6 8.4E-15 1.8E-19 154.7 13.1 153 200-405 160-330 (500)
43 PRK11058 GTPase HflX; Provisio 99.6 6.5E-15 1.4E-19 154.7 11.1 151 200-405 198-352 (426)
44 PRK00454 engB GTP-binding prot 99.6 4.1E-14 8.9E-19 133.9 15.3 157 198-405 23-184 (196)
45 COG0370 FeoB Fe2+ transport sy 99.6 1.3E-14 2.8E-19 154.6 12.7 149 200-405 4-154 (653)
46 PRK04213 GTP-binding protein; 99.6 4.6E-14 9.9E-19 134.3 15.4 157 198-405 8-182 (201)
47 cd01889 SelB_euk SelB subfamil 99.6 1.6E-14 3.4E-19 136.6 12.1 106 288-405 68-176 (192)
48 PRK09518 bifunctional cytidyla 99.6 1.4E-14 3E-19 162.7 13.3 152 199-405 275-426 (712)
49 cd04165 GTPBP1_like GTPBP1-lik 99.6 6.5E-14 1.4E-18 135.2 16.1 106 288-405 84-213 (224)
50 PRK00093 GTP-binding protein D 99.6 2.1E-14 4.6E-19 153.1 13.7 151 200-405 2-152 (435)
51 cd01878 HflX HflX subfamily. 99.6 1.9E-14 4.1E-19 137.3 11.9 152 199-405 41-195 (204)
52 PRK12297 obgE GTPase CgtA; Rev 99.6 3E-14 6.4E-19 148.8 13.7 150 200-405 159-317 (424)
53 COG1126 GlnQ ABC-type polar am 99.6 3.6E-15 7.7E-20 137.5 5.9 169 174-363 5-197 (240)
54 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 4.1E-14 8.9E-19 130.2 13.1 154 200-405 1-156 (168)
55 cd01883 EF1_alpha Eukaryotic e 99.5 2.3E-14 5E-19 138.3 10.6 169 202-406 2-196 (219)
56 COG2262 HflX GTPases [General 99.5 6.7E-14 1.5E-18 140.8 14.1 145 200-405 193-346 (411)
57 cd01891 TypA_BipA TypA (tyrosi 99.5 1.7E-13 3.6E-18 129.8 16.2 105 289-405 66-172 (194)
58 cd01886 EF-G Elongation factor 99.5 3.8E-14 8.2E-19 140.6 12.2 128 202-366 2-130 (270)
59 CHL00071 tufA elongation facto 99.5 7.6E-14 1.6E-18 147.0 15.0 168 199-405 12-183 (409)
60 cd04104 p47_IIGP_like p47 (47- 99.5 1.5E-13 3.4E-18 130.3 15.6 120 200-366 2-121 (197)
61 cd01879 FeoB Ferrous iron tran 99.5 2.7E-14 6E-19 129.9 9.9 145 204-405 1-147 (158)
62 PRK05506 bifunctional sulfate 99.5 5.6E-14 1.2E-18 156.0 13.8 189 200-430 25-231 (632)
63 PRK12317 elongation factor 1-a 99.5 8.5E-14 1.8E-18 147.8 13.6 191 200-431 7-216 (425)
64 PRK09554 feoB ferrous iron tra 99.5 6.7E-14 1.5E-18 156.6 13.1 153 200-405 4-158 (772)
65 cd04160 Arfrp1 Arfrp1 subfamil 99.5 9.7E-14 2.1E-18 127.7 11.8 105 289-405 51-159 (167)
66 cd01881 Obg_like The Obg-like 99.5 4.8E-14 1E-18 130.7 9.4 151 204-405 1-167 (176)
67 cd01888 eIF2_gamma eIF2-gamma 99.5 2.8E-13 6E-18 129.2 13.4 106 288-405 83-189 (203)
68 cd01876 YihA_EngB The YihA (En 99.5 6.1E-13 1.3E-17 121.8 15.2 157 202-405 2-161 (170)
69 cd04156 ARLTS1 ARLTS1 subfamil 99.5 2.5E-13 5.3E-18 124.1 12.5 145 201-405 1-152 (160)
70 cd04159 Arl10_like Arl10-like 99.5 3.3E-13 7.3E-18 122.2 13.1 146 202-405 2-151 (159)
71 cd01890 LepA LepA subfamily. 99.5 1.7E-13 3.7E-18 127.6 11.4 100 289-405 68-167 (179)
72 cd04157 Arl6 Arl6 subfamily. 99.5 2.6E-13 5.6E-18 124.0 12.2 147 202-405 2-154 (162)
73 cd04154 Arl2 Arl2 subfamily. 99.5 3.2E-13 7E-18 125.3 12.6 148 199-405 14-165 (173)
74 cd00880 Era_like Era (E. coli 99.5 4.9E-13 1.1E-17 120.7 13.3 154 204-405 1-154 (163)
75 PRK05124 cysN sulfate adenylyl 99.5 3.5E-13 7.6E-18 144.0 13.8 172 198-406 26-216 (474)
76 smart00178 SAR Sar1p-like memb 99.5 4.6E-13 9.9E-18 125.7 12.5 147 198-405 16-175 (184)
77 cd00878 Arf_Arl Arf (ADP-ribos 99.5 6.2E-13 1.3E-17 121.2 13.0 145 201-405 1-150 (158)
78 TIGR00475 selB selenocysteine- 99.5 4.5E-13 9.7E-18 146.5 14.3 153 201-405 2-156 (581)
79 cd00154 Rab Rab family. Rab G 99.5 3.9E-13 8.4E-18 121.6 11.3 147 201-405 2-152 (159)
80 cd04149 Arf6 Arf6 subfamily. 99.5 9.3E-13 2E-17 121.7 14.0 145 199-405 9-160 (168)
81 cd04140 ARHI_like ARHI subfami 99.5 2.8E-13 6E-18 124.7 10.4 148 200-405 2-155 (165)
82 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 7.3E-13 1.6E-17 123.1 13.3 147 200-405 16-166 (174)
83 cd04151 Arl1 Arl1 subfamily. 99.5 5.7E-13 1.2E-17 121.6 12.2 145 201-405 1-150 (158)
84 TIGR02034 CysN sulfate adenyly 99.5 5.5E-13 1.2E-17 140.3 13.5 169 201-406 2-188 (406)
85 cd01861 Rab6 Rab6 subfamily. 99.5 3.9E-13 8.4E-18 122.8 10.9 147 201-405 2-152 (161)
86 PLN03127 Elongation factor Tu; 99.5 6.4E-13 1.4E-17 140.7 13.9 161 200-400 62-227 (447)
87 PRK12736 elongation factor Tu; 99.4 1.1E-12 2.4E-17 137.5 15.3 165 199-401 12-179 (394)
88 TIGR02528 EutP ethanolamine ut 99.4 3.8E-13 8.3E-18 120.4 9.8 134 201-405 2-135 (142)
89 KOG1489 Predicted GTP-binding 99.4 3.6E-13 7.7E-18 130.4 10.2 155 198-405 195-357 (366)
90 cd04155 Arl3 Arl3 subfamily. 99.4 9E-13 1.9E-17 122.0 12.6 148 199-405 14-165 (173)
91 cd04138 H_N_K_Ras_like H-Ras/N 99.4 6.3E-13 1.4E-17 121.2 11.2 147 200-405 2-152 (162)
92 PLN03126 Elongation factor Tu; 99.4 9.1E-13 2E-17 140.3 14.0 165 200-403 82-250 (478)
93 cd04142 RRP22 RRP22 subfamily. 99.4 1.3E-12 2.9E-17 124.0 13.4 156 201-405 2-164 (198)
94 cd04136 Rap_like Rap-like subf 99.4 7E-13 1.5E-17 121.3 11.2 147 200-405 2-153 (163)
95 cd04145 M_R_Ras_like M-Ras/R-R 99.4 5.6E-13 1.2E-17 122.1 10.5 147 200-405 3-154 (164)
96 cd04150 Arf1_5_like Arf1-Arf5- 99.4 1.2E-12 2.6E-17 119.7 12.6 146 201-405 2-151 (159)
97 smart00173 RAS Ras subfamily o 99.4 5.3E-13 1.1E-17 122.4 10.2 146 201-405 2-152 (164)
98 PRK10512 selenocysteinyl-tRNA- 99.4 1.5E-12 3.3E-17 142.9 15.4 154 201-405 2-156 (614)
99 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 9.5E-13 2.1E-17 121.1 11.8 148 200-405 3-154 (166)
100 PRK15467 ethanolamine utilizat 99.4 8.5E-13 1.8E-17 120.7 11.2 135 201-405 3-137 (158)
101 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 3.3E-12 7.1E-17 119.8 15.4 149 200-405 4-160 (183)
102 cd01866 Rab2 Rab2 subfamily. 99.4 2.4E-12 5.2E-17 118.8 14.2 147 200-405 5-156 (168)
103 cd04124 RabL2 RabL2 subfamily. 99.4 1.4E-12 3E-17 119.6 12.5 145 201-405 2-148 (161)
104 PRK12735 elongation factor Tu; 99.4 1.1E-12 2.3E-17 137.8 13.2 165 199-404 12-182 (396)
105 COG0536 Obg Predicted GTPase [ 99.4 6.3E-13 1.4E-17 130.4 10.6 152 202-405 162-323 (369)
106 cd04119 RJL RJL (RabJ-Like) su 99.4 2.3E-12 5E-17 118.2 13.9 147 201-405 2-157 (168)
107 cd04161 Arl2l1_Arl13_like Arl2 99.4 1.1E-12 2.4E-17 121.1 11.7 141 202-400 2-148 (167)
108 cd00879 Sar1 Sar1 subfamily. 99.4 2E-12 4.4E-17 121.7 13.5 149 199-405 19-181 (190)
109 cd01867 Rab8_Rab10_Rab13_like 99.4 3.3E-12 7.2E-17 117.7 14.6 148 200-405 4-155 (167)
110 cd01868 Rab11_like Rab11-like. 99.4 9.1E-13 2E-17 121.0 10.6 148 200-405 4-155 (165)
111 cd01862 Rab7 Rab7 subfamily. 99.4 2.7E-12 5.8E-17 118.5 13.8 148 201-405 2-157 (172)
112 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 5.7E-13 1.2E-17 126.4 9.4 125 201-371 2-135 (196)
113 cd01864 Rab19 Rab19 subfamily. 99.4 8.8E-13 1.9E-17 121.2 10.4 149 200-405 4-156 (165)
114 cd01860 Rab5_related Rab5-rela 99.4 2.7E-12 5.9E-17 117.5 13.5 148 200-405 2-153 (163)
115 PRK00049 elongation factor Tu; 99.4 1.5E-12 3.2E-17 136.6 13.3 165 199-402 12-180 (396)
116 smart00027 EH Eps15 homology d 99.4 1.9E-12 4.1E-17 107.8 11.2 87 9-95 2-88 (96)
117 COG1163 DRG Predicted GTPase [ 99.4 1E-12 2.2E-17 127.8 10.7 89 200-334 64-152 (365)
118 TIGR00491 aIF-2 translation in 99.4 3.9E-12 8.4E-17 138.3 16.4 128 199-366 4-135 (590)
119 smart00175 RAB Rab subfamily o 99.4 1.6E-12 3.4E-17 119.0 11.5 147 201-405 2-152 (164)
120 cd04158 ARD1 ARD1 subfamily. 99.4 1.9E-12 4.2E-17 119.6 12.2 147 201-405 1-151 (169)
121 cd01885 EF2 EF2 (for archaea a 99.4 2E-12 4.3E-17 124.4 12.6 136 201-365 2-138 (222)
122 cd01893 Miro1 Miro1 subfamily. 99.4 2.2E-12 4.9E-17 118.8 12.3 146 201-405 2-154 (166)
123 cd01882 BMS1 Bms1. Bms1 is an 99.4 5.5E-12 1.2E-16 122.1 15.5 146 196-403 36-184 (225)
124 cd01863 Rab18 Rab18 subfamily. 99.4 1.5E-12 3.2E-17 119.0 10.8 147 201-405 2-152 (161)
125 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 2E-12 4.4E-17 118.9 11.8 111 202-367 2-114 (164)
126 COG1116 TauB ABC-type nitrate/ 99.4 5E-13 1.1E-17 127.0 7.4 159 188-363 16-192 (248)
127 smart00053 DYNc Dynamin, GTPas 99.4 2.1E-12 4.6E-17 124.9 12.0 160 198-367 25-207 (240)
128 TIGR00487 IF-2 translation ini 99.4 5.4E-12 1.2E-16 137.5 16.5 153 198-405 86-240 (587)
129 cd04113 Rab4 Rab4 subfamily. 99.4 1.1E-12 2.4E-17 119.9 9.5 146 201-405 2-152 (161)
130 cd04168 TetM_like Tet(M)-like 99.4 2E-12 4.3E-17 126.1 11.6 128 202-366 2-130 (237)
131 TIGR00485 EF-Tu translation el 99.4 2.1E-12 4.5E-17 135.6 12.7 164 199-401 12-179 (394)
132 smart00177 ARF ARF-like small 99.4 3.4E-12 7.3E-17 118.8 12.7 144 200-405 14-164 (175)
133 PRK05306 infB translation init 99.4 5.5E-12 1.2E-16 140.6 16.2 153 197-405 288-442 (787)
134 cd01865 Rab3 Rab3 subfamily. 99.4 1.4E-12 3.1E-17 119.9 9.7 147 200-405 2-153 (165)
135 cd04144 Ras2 Ras2 subfamily. 99.4 6.8E-12 1.5E-16 118.4 14.4 146 201-405 1-153 (190)
136 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 5.8E-12 1.3E-16 119.9 14.0 149 201-405 2-158 (201)
137 cd04175 Rap1 Rap1 subgroup. T 99.4 4.7E-12 1E-16 116.2 12.8 147 200-405 2-153 (164)
138 cd04122 Rab14 Rab14 subfamily. 99.4 2.9E-12 6.4E-17 117.9 11.4 148 200-405 3-154 (166)
139 cd04176 Rap2 Rap2 subgroup. T 99.4 1.7E-12 3.7E-17 118.9 9.8 147 200-405 2-153 (163)
140 cd04112 Rab26 Rab26 subfamily. 99.4 4.3E-12 9.2E-17 119.8 12.7 147 201-405 2-153 (191)
141 cd01896 DRG The developmentall 99.4 4E-12 8.7E-17 123.7 12.7 88 201-334 2-89 (233)
142 TIGR01394 TypA_BipA GTP-bindin 99.4 3.3E-12 7.2E-17 139.5 13.5 166 201-405 3-171 (594)
143 cd04118 Rab24 Rab24 subfamily. 99.4 3E-12 6.6E-17 120.9 11.3 151 201-405 2-156 (193)
144 PTZ00133 ADP-ribosylation fact 99.4 6.2E-12 1.3E-16 117.8 13.2 148 199-405 17-168 (182)
145 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 3.8E-12 8.1E-17 117.9 11.6 147 201-405 2-155 (170)
146 TIGR00437 feoB ferrous iron tr 99.4 9.8E-13 2.1E-17 144.0 9.0 143 206-405 1-145 (591)
147 PTZ00369 Ras-like protein; Pro 99.4 4E-12 8.7E-17 119.8 12.0 148 199-405 5-157 (189)
148 cd04139 RalA_RalB RalA/RalB su 99.4 4.8E-12 1E-16 115.7 12.2 146 201-405 2-152 (164)
149 PTZ00141 elongation factor 1- 99.4 5.7E-12 1.2E-16 133.7 14.2 170 200-406 8-204 (446)
150 PLN00223 ADP-ribosylation fact 99.4 7E-12 1.5E-16 117.3 13.2 147 200-405 18-168 (181)
151 TIGR00484 EF-G translation elo 99.4 3E-12 6.5E-17 143.5 12.6 159 200-400 11-171 (689)
152 cd04106 Rab23_lke Rab23-like s 99.4 6.2E-12 1.3E-16 115.0 12.5 149 201-405 2-153 (162)
153 cd04127 Rab27A Rab27a subfamil 99.4 1.3E-11 2.9E-16 115.0 15.0 158 200-405 5-167 (180)
154 cd04109 Rab28 Rab28 subfamily. 99.4 4.2E-12 9.1E-17 122.2 11.5 148 201-405 2-156 (215)
155 cd04114 Rab30 Rab30 subfamily. 99.4 6.7E-12 1.4E-16 115.6 12.2 149 200-405 8-159 (169)
156 PRK10218 GTP-binding protein; 99.4 1.1E-11 2.4E-16 135.3 15.7 166 200-404 6-174 (607)
157 PF05049 IIGP: Interferon-indu 99.4 1.7E-11 3.7E-16 124.8 15.9 176 200-437 36-227 (376)
158 cd04170 EF-G_bact Elongation f 99.4 5E-12 1.1E-16 126.0 11.8 98 289-404 65-162 (268)
159 cd04101 RabL4 RabL4 (Rab-like4 99.4 3.8E-12 8.2E-17 116.7 10.1 150 201-405 2-154 (164)
160 PRK00007 elongation factor G; 99.3 3.4E-12 7.4E-17 143.0 11.7 160 200-400 11-171 (693)
161 cd01850 CDC_Septin CDC/Septin. 99.3 9.4E-12 2E-16 124.0 13.4 55 322-377 114-168 (276)
162 cd04147 Ras_dva Ras-dva subfam 99.3 3.6E-12 7.9E-17 121.0 10.0 148 201-405 1-153 (198)
163 TIGR00231 small_GTP small GTP- 99.3 3.3E-12 7.2E-17 115.1 9.1 147 200-405 2-154 (161)
164 CHL00189 infB translation init 99.3 1.1E-11 2.3E-16 137.1 14.8 157 197-405 242-400 (742)
165 cd04123 Rab21 Rab21 subfamily. 99.3 5.2E-12 1.1E-16 115.1 10.4 147 201-405 2-152 (162)
166 TIGR00483 EF-1_alpha translati 99.3 8.7E-12 1.9E-16 132.4 13.7 172 199-406 7-198 (426)
167 cd04169 RF3 RF3 subfamily. Pe 99.3 5.5E-12 1.2E-16 125.0 11.2 66 289-366 72-137 (267)
168 PF10662 PduV-EutP: Ethanolami 99.3 9.4E-12 2E-16 109.6 11.4 131 201-405 3-136 (143)
169 cd04125 RabA_like RabA-like su 99.3 1E-11 2.2E-16 116.8 12.2 147 201-405 2-152 (188)
170 COG3596 Predicted GTPase [Gene 99.3 9.5E-12 2.1E-16 119.0 11.7 122 200-367 40-163 (296)
171 cd00157 Rho Rho (Ras homology) 99.3 3.8E-12 8.3E-17 117.4 8.8 151 201-405 2-163 (171)
172 PLN03118 Rab family protein; P 99.3 8E-12 1.7E-16 119.9 11.3 149 198-405 13-167 (211)
173 cd04126 Rab20 Rab20 subfamily. 99.3 2.9E-11 6.4E-16 116.3 15.1 110 201-366 2-114 (220)
174 cd00876 Ras Ras family. The R 99.3 8E-12 1.7E-16 113.6 10.5 146 201-405 1-151 (160)
175 PRK04004 translation initiatio 99.3 2.5E-11 5.3E-16 132.7 16.1 65 289-365 72-136 (586)
176 COG5256 TEF1 Translation elong 99.3 1.9E-11 4.1E-16 123.1 13.9 171 200-407 8-203 (428)
177 cd04132 Rho4_like Rho4-like su 99.3 2.9E-11 6.4E-16 113.5 14.6 148 201-405 2-157 (187)
178 smart00174 RHO Rho (Ras homolo 99.3 8.7E-12 1.9E-16 115.5 10.8 150 202-405 1-162 (174)
179 cd04110 Rab35 Rab35 subfamily. 99.3 1.7E-11 3.7E-16 116.6 12.8 149 199-405 6-157 (199)
180 COG1135 AbcC ABC-type metal io 99.3 2.8E-12 6.1E-17 124.5 7.3 159 189-364 20-204 (339)
181 cd04167 Snu114p Snu114p subfam 99.3 2.1E-11 4.6E-16 117.2 13.4 65 289-365 72-136 (213)
182 cd04120 Rab12 Rab12 subfamily. 99.3 1.8E-11 3.9E-16 116.4 12.4 149 201-405 2-153 (202)
183 cd04116 Rab9 Rab9 subfamily. 99.3 1.8E-11 4E-16 112.9 12.2 149 200-405 6-161 (170)
184 cd01892 Miro2 Miro2 subfamily. 99.3 9.4E-12 2E-16 115.1 10.2 151 199-405 4-156 (169)
185 PLN03110 Rab GTPase; Provision 99.3 2.1E-11 4.5E-16 117.5 12.9 150 198-405 11-164 (216)
186 cd04137 RheB Rheb (Ras Homolog 99.3 2.5E-11 5.4E-16 113.2 13.0 147 200-405 2-153 (180)
187 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 1.8E-11 4E-16 113.5 11.8 148 200-405 3-154 (172)
188 cd01853 Toc34_like Toc34-like 99.3 1.5E-11 3.3E-16 120.3 11.8 128 197-367 29-164 (249)
189 cd04111 Rab39 Rab39 subfamily. 99.3 2.9E-11 6.3E-16 116.0 13.5 149 200-405 3-156 (211)
190 PRK12739 elongation factor G; 99.3 1E-11 2.2E-16 139.3 11.7 131 200-367 9-140 (691)
191 PLN03108 Rab family protein; P 99.3 2.4E-11 5.2E-16 116.5 12.4 148 200-405 7-158 (210)
192 COG0411 LivG ABC-type branched 99.3 1E-12 2.3E-17 123.8 2.6 171 175-365 8-213 (250)
193 cd00877 Ran Ran (Ras-related n 99.3 1.9E-11 4.1E-16 112.7 11.0 146 201-405 2-149 (166)
194 COG1136 SalX ABC-type antimicr 99.3 4.6E-12 1E-16 120.2 6.9 172 174-360 4-201 (226)
195 cd04143 Rhes_like Rhes_like su 99.3 2.4E-11 5.2E-16 119.2 12.1 147 201-405 2-161 (247)
196 cd04177 RSR1 RSR1 subgroup. R 99.3 2.4E-11 5.2E-16 112.1 11.4 147 201-405 3-154 (168)
197 KOG1490 GTP-binding protein CR 99.3 1.7E-11 3.6E-16 125.2 10.8 160 198-405 167-331 (620)
198 cd04117 Rab15 Rab15 subfamily. 99.3 2E-11 4.3E-16 111.9 10.1 148 201-405 2-152 (161)
199 cd04115 Rab33B_Rab33A Rab33B/R 99.3 3.3E-11 7.3E-16 111.4 11.4 148 200-404 3-155 (170)
200 cd04146 RERG_RasL11_like RERG/ 99.3 3E-11 6.5E-16 111.0 10.9 147 201-405 1-154 (165)
201 cd04148 RGK RGK subfamily. Th 99.3 2.3E-11 4.9E-16 117.6 10.3 145 201-405 2-153 (221)
202 COG1217 TypA Predicted membran 99.3 5.7E-11 1.2E-15 120.3 13.3 163 201-402 7-172 (603)
203 cd01874 Cdc42 Cdc42 subfamily. 99.2 2.4E-11 5.1E-16 113.1 9.5 152 200-405 2-165 (175)
204 cd04128 Spg1 Spg1p. Spg1p (se 99.2 1.2E-10 2.7E-15 109.0 14.3 149 201-405 2-156 (182)
205 cd04135 Tc10 TC10 subfamily. 99.2 3E-11 6.5E-16 111.9 9.9 151 201-405 2-164 (174)
206 TIGR03680 eif2g_arch translati 99.2 6.6E-11 1.4E-15 124.7 13.7 105 288-405 80-186 (406)
207 cd01870 RhoA_like RhoA-like su 99.2 4.6E-11 9.9E-16 110.8 11.1 152 200-405 2-165 (175)
208 PTZ00327 eukaryotic translatio 99.2 7.7E-11 1.7E-15 124.7 13.7 105 288-404 117-222 (460)
209 COG2884 FtsE Predicted ATPase 99.2 2.2E-11 4.8E-16 110.2 7.9 161 189-364 16-199 (223)
210 TIGR01393 lepA GTP-binding pro 99.2 7.8E-11 1.7E-15 129.1 13.9 165 201-405 5-170 (595)
211 cd04130 Wrch_1 Wrch-1 subfamil 99.2 2.5E-11 5.4E-16 112.6 8.1 151 201-405 2-164 (173)
212 cd04134 Rho3 Rho3 subfamily. 99.2 4.7E-11 1E-15 112.5 10.1 151 201-405 2-164 (189)
213 cd01871 Rac1_like Rac1-like su 99.2 9.9E-11 2.1E-15 108.8 12.1 152 200-405 2-165 (174)
214 COG3638 ABC-type phosphate/pho 99.2 1.2E-11 2.5E-16 115.9 5.5 160 189-365 18-211 (258)
215 KOG1145 Mitochondrial translat 99.2 9.5E-11 2.1E-15 120.9 12.6 149 198-405 152-306 (683)
216 TIGR02836 spore_IV_A stage IV 99.2 1.5E-10 3.3E-15 117.3 13.6 135 200-366 18-194 (492)
217 PF00025 Arf: ADP-ribosylation 99.2 2.5E-11 5.4E-16 113.0 7.4 150 198-405 13-166 (175)
218 PLN03071 GTP-binding nuclear p 99.2 7.9E-11 1.7E-15 113.7 11.1 149 198-405 12-162 (219)
219 PRK09602 translation-associate 99.2 1.2E-10 2.6E-15 121.3 13.2 112 200-333 2-113 (396)
220 cd04105 SR_beta Signal recogni 99.2 1.1E-10 2.4E-15 111.3 11.7 115 200-366 1-123 (203)
221 PLN00043 elongation factor 1-a 99.2 1.1E-10 2.5E-15 123.7 12.8 171 200-406 8-204 (447)
222 cd04131 Rnd Rnd subfamily. Th 99.2 1.4E-10 3E-15 108.2 11.8 115 200-366 2-119 (178)
223 cd01899 Ygr210 Ygr210 subfamil 99.2 1.7E-10 3.6E-15 116.8 13.1 110 202-333 1-110 (318)
224 PRK05433 GTP-binding protein L 99.2 1.1E-10 2.3E-15 128.2 12.5 166 200-405 8-174 (600)
225 cd00882 Ras_like_GTPase Ras-li 99.2 1.2E-10 2.7E-15 103.5 10.7 101 289-405 46-150 (157)
226 cd04121 Rab40 Rab40 subfamily. 99.2 4.7E-10 1E-14 105.6 15.1 149 199-405 6-157 (189)
227 COG0532 InfB Translation initi 99.2 1.3E-10 2.8E-15 121.0 12.0 152 198-405 4-160 (509)
228 TIGR00991 3a0901s02IAP34 GTP-b 99.2 1.6E-10 3.5E-15 114.8 12.0 121 199-366 38-167 (313)
229 COG1129 MglA ABC-type sugar tr 99.2 2.2E-11 4.7E-16 127.6 5.8 172 174-364 11-207 (500)
230 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.2 2.2E-10 4.8E-15 107.2 11.9 116 199-366 5-123 (182)
231 PTZ00416 elongation factor 2; 99.2 1.3E-10 2.9E-15 132.3 12.4 137 200-365 20-157 (836)
232 KOG1955 Ral-GTPase effector RA 99.2 3.4E-11 7.4E-16 121.4 6.7 88 8-95 222-309 (737)
233 COG1121 ZnuC ABC-type Mn/Zn tr 99.2 5.7E-11 1.2E-15 114.5 7.5 160 189-363 18-200 (254)
234 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.2 5.7E-10 1.2E-14 108.1 14.4 115 199-365 13-130 (232)
235 TIGR00503 prfC peptide chain r 99.2 2.6E-10 5.6E-15 123.2 13.2 133 199-366 11-146 (527)
236 COG3839 MalK ABC-type sugar tr 99.2 4.3E-11 9.2E-16 120.4 6.4 164 175-359 7-191 (338)
237 PRK04000 translation initiatio 99.1 4E-10 8.7E-15 118.7 14.0 106 288-405 85-191 (411)
238 KOG1532 GTPase XAB1, interacts 99.1 3.1E-10 6.8E-15 107.8 11.0 198 196-405 16-254 (366)
239 PRK00741 prfC peptide chain re 99.1 2.1E-10 4.6E-15 123.8 11.2 133 199-366 10-145 (526)
240 COG1131 CcmA ABC-type multidru 99.1 8.2E-11 1.8E-15 118.2 7.4 155 189-358 19-193 (293)
241 cd04133 Rop_like Rop subfamily 99.1 4.8E-10 1E-14 104.3 11.8 149 200-405 2-163 (176)
242 COG3840 ThiQ ABC-type thiamine 99.1 1.6E-10 3.5E-15 103.9 8.0 153 193-362 19-190 (231)
243 COG4598 HisP ABC-type histidin 99.1 1.2E-10 2.5E-15 104.4 6.5 169 175-362 10-212 (256)
244 cd01875 RhoG RhoG subfamily. 99.1 1.2E-09 2.5E-14 103.2 13.7 152 200-405 4-167 (191)
245 cd04102 RabL3 RabL3 (Rab-like3 99.1 1.3E-09 2.7E-14 103.6 14.0 156 201-405 2-180 (202)
246 COG4555 NatA ABC-type Na+ tran 99.1 1.1E-10 2.4E-15 106.6 6.3 155 189-358 16-189 (245)
247 PF00735 Septin: Septin; Inte 99.1 6.1E-10 1.3E-14 110.9 12.2 60 321-381 112-171 (281)
248 COG0410 LivF ABC-type branched 99.1 1.2E-10 2.6E-15 109.1 6.4 157 183-358 13-193 (237)
249 KOG0073 GTP-binding ADP-ribosy 99.1 1.8E-09 3.8E-14 95.0 13.1 145 200-405 17-168 (185)
250 PF04548 AIG1: AIG1 family; I 99.1 1.4E-10 3.1E-15 111.3 6.9 123 201-372 2-136 (212)
251 TIGR02314 ABC_MetN D-methionin 99.1 1.2E-10 2.6E-15 119.4 6.7 158 189-363 19-202 (343)
252 cd04129 Rho2 Rho2 subfamily. 99.1 7.3E-10 1.6E-14 104.2 11.4 150 200-405 2-163 (187)
253 PF08477 Miro: Miro-like prote 99.1 1.6E-10 3.5E-15 100.0 6.3 112 201-363 1-119 (119)
254 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.1 8.6E-10 1.9E-14 106.3 11.9 115 200-366 2-119 (222)
255 PRK13351 elongation factor G; 99.1 5.6E-10 1.2E-14 125.6 10.9 68 288-367 73-140 (687)
256 COG1117 PstB ABC-type phosphat 99.1 6.5E-10 1.4E-14 102.6 9.0 158 190-361 22-207 (253)
257 KOG0448 Mitofusin 1 GTPase, in 99.1 1.7E-09 3.7E-14 114.6 13.3 157 200-372 110-282 (749)
258 COG1127 Ttg2A ABC-type transpo 99.0 5.9E-10 1.3E-14 104.9 8.3 167 190-364 23-208 (263)
259 KOG1029 Endocytic adaptor prot 99.0 3E-10 6.5E-15 120.0 7.1 100 8-113 186-285 (1118)
260 COG3845 ABC-type uncharacteriz 99.0 3.8E-10 8.3E-15 116.2 7.7 170 183-364 14-202 (501)
261 PLN00116 translation elongatio 99.0 1.1E-09 2.3E-14 125.2 12.0 143 200-365 20-163 (843)
262 KOG1029 Endocytic adaptor prot 99.0 8.4E-10 1.8E-14 116.7 10.1 91 5-96 4-94 (1118)
263 KOG0410 Predicted GTP binding 99.0 5.7E-10 1.2E-14 108.5 8.1 147 198-405 177-331 (410)
264 KOG0462 Elongation factor-type 99.0 6.5E-10 1.4E-14 114.9 9.0 162 201-405 62-225 (650)
265 PF09439 SRPRB: Signal recogni 99.0 1.2E-09 2.7E-14 100.6 9.6 114 199-367 3-127 (181)
266 COG3842 PotA ABC-type spermidi 99.0 3.1E-10 6.8E-15 114.8 5.9 165 175-360 9-195 (352)
267 PRK09435 membrane ATPase/prote 99.0 1.1E-08 2.3E-13 103.8 16.8 99 288-405 149-250 (332)
268 KOG0458 Elongation factor 1 al 99.0 3.1E-09 6.7E-14 111.1 13.1 185 198-417 176-384 (603)
269 COG4152 ABC-type uncharacteriz 99.0 5.7E-10 1.2E-14 104.9 6.9 171 174-363 5-191 (300)
270 smart00176 RAN Ran (Ras-relate 99.0 2.3E-09 4.9E-14 101.8 11.1 98 289-405 45-144 (200)
271 PTZ00258 GTP-binding protein; 99.0 2E-09 4.4E-14 111.0 11.1 107 197-333 19-126 (390)
272 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.0 3E-09 6.5E-14 96.4 10.6 150 199-405 22-175 (221)
273 TIGR00993 3a0901s04IAP86 chlor 99.0 2E-09 4.3E-14 115.2 11.0 126 198-366 117-250 (763)
274 PF00071 Ras: Ras family; Int 99.0 5.8E-09 1.3E-13 95.2 12.7 147 201-405 1-151 (162)
275 cd04103 Centaurin_gamma Centau 99.0 3.3E-09 7.3E-14 96.9 11.0 142 201-405 2-149 (158)
276 KOG0098 GTPase Rab2, small G p 99.0 4.5E-09 9.7E-14 94.5 11.3 149 200-405 7-158 (216)
277 PRK07560 elongation factor EF- 99.0 1.9E-09 4.1E-14 121.7 10.8 131 200-365 21-152 (731)
278 COG1120 FepC ABC-type cobalami 99.0 1.7E-09 3.6E-14 104.9 8.8 159 189-364 16-201 (258)
279 TIGR00490 aEF-2 translation el 99.0 3.3E-09 7.1E-14 119.5 12.5 128 200-366 20-152 (720)
280 PRK13536 nodulation factor exp 99.0 6.3E-10 1.4E-14 114.2 6.1 171 174-363 44-233 (340)
281 PRK13537 nodulation ABC transp 99.0 8E-10 1.7E-14 112.1 6.6 160 189-363 21-199 (306)
282 COG2229 Predicted GTPase [Gene 99.0 7.7E-09 1.7E-13 93.3 11.9 158 198-404 9-167 (187)
283 TIGR00960 3a0501s02 Type II (G 99.0 1.2E-09 2.6E-14 105.2 7.3 156 190-362 18-198 (216)
284 PRK09601 GTP-binding protein Y 99.0 2E-09 4.3E-14 109.8 9.1 104 200-333 3-107 (364)
285 TIGR01186 proV glycine betaine 99.0 1.3E-09 2.8E-14 112.4 7.8 157 190-363 8-191 (363)
286 COG1125 OpuBA ABC-type proline 98.9 8.3E-10 1.8E-14 104.5 5.6 158 189-363 15-197 (309)
287 TIGR01188 drrA daunorubicin re 98.9 1.3E-09 2.7E-14 110.6 7.2 156 190-362 8-184 (302)
288 cd01900 YchF YchF subfamily. 98.9 1.8E-09 3.8E-14 106.8 8.0 103 202-334 1-104 (274)
289 PRK12740 elongation factor G; 98.9 3.4E-09 7.4E-14 119.0 11.3 66 289-366 61-126 (668)
290 PTZ00132 GTP-binding nuclear p 98.9 7E-09 1.5E-13 99.8 11.6 98 289-405 59-158 (215)
291 cd03261 ABC_Org_Solvent_Resist 98.9 1.7E-09 3.6E-14 105.7 7.1 156 190-362 15-197 (235)
292 PF03308 ArgK: ArgK protein; 98.9 2.9E-09 6.2E-14 102.2 8.3 99 288-405 122-220 (266)
293 PRK11650 ugpC glycerol-3-phosp 98.9 1.9E-09 4.2E-14 111.3 7.7 156 190-362 19-195 (356)
294 PRK11629 lolD lipoprotein tran 98.9 2.3E-09 4.9E-14 104.6 7.7 157 190-363 24-207 (233)
295 TIGR02673 FtsE cell division A 98.9 2.7E-09 5.9E-14 102.5 8.0 155 190-361 17-196 (214)
296 cd03293 ABC_NrtD_SsuB_transpor 98.9 2.3E-09 4.9E-14 103.6 7.2 156 190-362 19-192 (220)
297 PRK11432 fbpC ferric transport 98.9 3.3E-09 7.1E-14 109.3 8.8 155 190-361 21-196 (351)
298 cd01858 NGP_1 NGP-1. Autoanti 98.9 2.1E-09 4.5E-14 98.1 6.5 40 199-240 102-141 (157)
299 cd03218 ABC_YhbG The ABC trans 98.9 2.6E-09 5.6E-14 104.1 7.6 155 190-361 15-192 (232)
300 cd01873 RhoBTB RhoBTB subfamil 98.9 1E-08 2.2E-13 97.1 11.4 65 289-366 67-134 (195)
301 TIGR02211 LolD_lipo_ex lipopro 98.9 2.3E-09 5.1E-14 103.6 7.2 157 190-363 20-203 (221)
302 COG4161 ArtP ABC-type arginine 98.9 3.5E-09 7.6E-14 93.3 7.3 160 190-364 17-203 (242)
303 COG1118 CysA ABC-type sulfate/ 98.9 3E-09 6.6E-14 103.4 7.6 159 183-360 12-196 (345)
304 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.9 2.6E-09 5.7E-14 103.0 7.1 156 190-362 19-201 (218)
305 cd03265 ABC_DrrA DrrA is the A 98.9 2.9E-09 6.4E-14 102.8 7.5 156 190-362 15-192 (220)
306 TIGR00750 lao LAO/AO transport 98.9 1.1E-07 2.4E-12 96.1 19.2 99 288-405 127-228 (300)
307 TIGR01166 cbiO cobalt transpor 98.9 4.1E-09 8.9E-14 99.4 8.3 158 190-364 7-189 (190)
308 cd00052 EH Eps15 homology doma 98.9 7.3E-09 1.6E-13 79.8 8.2 67 19-85 1-67 (67)
309 COG5019 CDC3 Septin family pro 98.9 2.3E-08 5E-13 99.8 13.6 60 321-381 132-191 (373)
310 PRK11153 metN DL-methionine tr 98.9 2.4E-09 5.3E-14 110.3 6.9 157 189-362 19-201 (343)
311 cd03225 ABC_cobalt_CbiO_domain 98.9 3.5E-09 7.6E-14 101.6 7.5 155 190-361 16-193 (211)
312 PLN00023 GTP-binding protein; 98.9 1E-08 2.2E-13 102.6 10.8 129 198-367 20-166 (334)
313 KOG0092 GTPase Rab5/YPT51 and 98.9 5E-09 1.1E-13 95.0 7.6 148 200-405 6-157 (200)
314 COG1124 DppF ABC-type dipeptid 98.9 4.7E-09 1E-13 99.3 7.7 174 174-364 6-204 (252)
315 cd03266 ABC_NatA_sodium_export 98.9 2.8E-09 6.2E-14 102.7 6.5 156 190-362 20-196 (218)
316 TIGR01288 nodI ATP-binding ABC 98.9 3.7E-09 7.9E-14 107.2 7.4 156 190-362 19-195 (303)
317 cd03259 ABC_Carb_Solutes_like 98.9 3.9E-09 8.4E-14 101.4 7.2 156 190-362 15-191 (213)
318 cd03246 ABCC_Protease_Secretio 98.9 8.2E-09 1.8E-13 95.8 9.2 130 190-362 17-156 (173)
319 cd03292 ABC_FtsE_transporter F 98.9 3.7E-09 8.1E-14 101.6 7.1 156 190-362 16-196 (214)
320 cd03219 ABC_Mj1267_LivG_branch 98.9 3E-09 6.6E-14 103.9 6.4 156 190-362 15-203 (236)
321 PRK09536 btuD corrinoid ABC tr 98.9 3.4E-09 7.4E-14 110.7 7.1 161 189-364 17-201 (402)
322 COG0480 FusA Translation elong 98.9 8.2E-09 1.8E-13 113.7 10.4 131 200-367 11-143 (697)
323 TIGR03258 PhnT 2-aminoethylpho 98.9 4.6E-09 1E-13 108.6 8.0 157 190-363 20-200 (362)
324 PRK10851 sulfate/thiosulfate t 98.9 3.6E-09 7.8E-14 109.2 7.1 156 190-362 17-197 (353)
325 KOG0078 GTP-binding protein SE 98.9 2.2E-08 4.7E-13 92.6 11.4 154 195-405 8-164 (207)
326 TIGR03415 ABC_choXWV_ATP choli 98.9 6.6E-09 1.4E-13 107.8 8.9 157 190-363 39-226 (382)
327 PRK13538 cytochrome c biogenes 98.9 5.6E-09 1.2E-13 99.6 7.7 159 190-365 16-192 (204)
328 cd03258 ABC_MetN_methionine_tr 98.9 4.9E-09 1.1E-13 102.2 7.4 156 190-362 20-201 (233)
329 cd03269 ABC_putative_ATPase Th 98.9 4.3E-09 9.3E-14 100.9 6.8 156 190-362 15-188 (210)
330 cd03230 ABC_DR_subfamily_A Thi 98.9 7.9E-09 1.7E-13 95.9 8.4 131 190-361 15-154 (173)
331 cd03294 ABC_Pro_Gly_Bertaine T 98.9 7.9E-09 1.7E-13 103.0 8.9 155 190-361 39-220 (269)
332 PRK10584 putative ABC transpor 98.9 4.7E-09 1E-13 102.0 7.1 156 190-362 25-207 (228)
333 PRK09452 potA putrescine/sperm 98.8 8.3E-09 1.8E-13 107.2 9.3 156 190-362 29-205 (375)
334 PRK13539 cytochrome c biogenes 98.8 5.4E-09 1.2E-13 100.0 7.4 160 190-366 17-191 (207)
335 PRK13768 GTPase; Provisional 98.8 1.5E-08 3.3E-13 99.8 10.8 78 289-372 98-182 (253)
336 PRK11000 maltose/maltodextrin 98.8 6E-09 1.3E-13 108.3 8.3 157 190-363 18-195 (369)
337 cd03256 ABC_PhnC_transporter A 98.8 6.1E-09 1.3E-13 102.1 7.9 157 190-363 16-206 (241)
338 cd03226 ABC_cobalt_CbiO_domain 98.8 4.2E-09 9.1E-14 100.6 6.6 156 190-362 15-186 (205)
339 cd03215 ABC_Carb_Monos_II This 98.8 6.4E-09 1.4E-13 97.4 7.6 130 196-362 23-164 (182)
340 COG2895 CysN GTPases - Sulfate 98.8 1.7E-08 3.6E-13 99.6 10.7 173 200-406 7-194 (431)
341 cd03235 ABC_Metallic_Cations A 98.8 4E-09 8.8E-14 101.3 6.4 157 190-363 14-193 (213)
342 PRK13540 cytochrome c biogenes 98.8 5E-09 1.1E-13 99.6 6.8 161 190-367 16-192 (200)
343 cd03301 ABC_MalK_N The N-termi 98.8 5.1E-09 1.1E-13 100.6 6.9 156 190-362 15-191 (213)
344 cd03262 ABC_HisP_GlnQ_permease 98.8 9.1E-09 2E-13 98.8 8.6 156 190-362 15-195 (213)
345 TIGR03608 L_ocin_972_ABC putat 98.8 4.2E-09 9.2E-14 100.6 6.2 157 190-363 13-195 (206)
346 COG1137 YhbG ABC-type (unclass 98.8 8.8E-10 1.9E-14 100.7 1.4 151 190-357 19-194 (243)
347 cd03264 ABC_drug_resistance_li 98.8 5.3E-09 1.1E-13 100.4 6.8 154 190-362 15-189 (211)
348 cd03296 ABC_CysA_sulfate_impor 98.8 8.9E-09 1.9E-13 100.8 8.5 157 190-363 17-198 (239)
349 PRK13543 cytochrome c biogenes 98.8 7.1E-09 1.5E-13 99.7 7.7 158 190-364 26-199 (214)
350 cd03229 ABC_Class3 This class 98.8 1.3E-08 2.9E-13 94.8 9.3 133 190-361 15-160 (178)
351 TIGR03265 PhnT2 putative 2-ami 98.8 8E-09 1.7E-13 106.6 8.4 156 190-362 19-195 (353)
352 cd03231 ABC_CcmA_heme_exporter 98.8 8.4E-09 1.8E-13 98.2 7.9 157 190-363 15-186 (201)
353 PRK13651 cobalt transporter AT 98.8 6.6E-09 1.4E-13 105.2 7.6 160 189-363 21-226 (305)
354 TIGR03740 galliderm_ABC gallid 98.8 8.2E-09 1.8E-13 99.9 7.8 159 190-363 15-185 (223)
355 cd03268 ABC_BcrA_bacitracin_re 98.8 6.5E-09 1.4E-13 99.5 7.0 156 189-361 14-185 (208)
356 PRK11247 ssuB aliphatic sulfon 98.8 5.8E-09 1.3E-13 103.1 6.9 157 190-363 27-195 (257)
357 PRK13541 cytochrome c biogenes 98.8 1.4E-08 3E-13 96.2 9.1 156 195-367 22-188 (195)
358 PRK10908 cell division protein 98.8 7.9E-09 1.7E-13 99.9 7.5 157 190-363 17-198 (222)
359 cd03298 ABC_ThiQ_thiamine_tran 98.8 1.1E-08 2.4E-13 98.1 8.2 152 195-363 20-190 (211)
360 cd03233 ABC_PDR_domain1 The pl 98.8 1.6E-08 3.4E-13 96.4 9.1 146 189-361 21-178 (202)
361 PRK11248 tauB taurine transpor 98.8 1E-08 2.2E-13 101.4 8.0 156 190-362 16-189 (255)
362 PRK11300 livG leucine/isoleuci 98.8 4.9E-09 1.1E-13 103.6 5.8 156 190-362 20-214 (255)
363 TIGR02315 ABC_phnC phosphonate 98.8 9.6E-09 2.1E-13 100.8 7.8 157 190-363 17-207 (243)
364 PRK10895 lipopolysaccharide AB 98.8 5.3E-09 1.1E-13 102.5 5.9 155 190-361 18-196 (241)
365 cd03224 ABC_TM1139_LivF_branch 98.8 6E-09 1.3E-13 100.7 6.1 155 190-361 15-191 (222)
366 cd04178 Nucleostemin_like Nucl 98.8 7E-09 1.5E-13 95.8 6.2 40 198-239 116-155 (172)
367 TIGR01189 ccmA heme ABC export 98.8 1.3E-08 2.7E-13 96.7 8.2 157 190-363 15-188 (198)
368 PRK11124 artP arginine transpo 98.8 6.9E-09 1.5E-13 101.8 6.4 156 190-362 17-201 (242)
369 PRK11144 modC molybdate transp 98.8 1E-08 2.2E-13 106.0 7.9 151 195-362 20-189 (352)
370 PRK13635 cbiO cobalt transport 98.8 9.7E-09 2.1E-13 102.9 7.3 157 190-363 22-202 (279)
371 PRK10070 glycine betaine trans 98.8 1.2E-08 2.6E-13 106.5 8.3 157 190-363 43-226 (400)
372 cd03232 ABC_PDR_domain2 The pl 98.8 1.7E-08 3.8E-13 95.3 8.6 142 190-363 22-169 (192)
373 PRK13647 cbiO cobalt transport 98.8 9.1E-09 2E-13 102.8 7.0 157 190-363 20-199 (274)
374 COG1100 GTPase SAR1 and relate 98.8 7.1E-08 1.5E-12 92.8 13.1 118 200-368 6-127 (219)
375 cd03263 ABC_subfamily_A The AB 98.8 9E-09 2E-13 99.4 6.7 154 190-361 17-191 (220)
376 cd05022 S-100A13 S-100A13: S-1 98.8 3E-08 6.5E-13 80.7 8.7 74 14-87 5-83 (89)
377 COG4175 ProV ABC-type proline/ 98.8 1.3E-08 2.9E-13 99.2 7.7 156 191-363 44-226 (386)
378 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 4.9E-08 1.1E-12 94.1 11.6 156 201-402 1-163 (232)
379 TIGR01184 ntrCD nitrate transp 98.8 1.3E-08 2.9E-13 99.0 7.8 151 195-362 7-175 (230)
380 TIGR03411 urea_trans_UrtD urea 98.8 7.7E-09 1.7E-13 101.4 6.2 156 190-363 17-203 (242)
381 COG4525 TauB ABC-type taurine 98.8 1E-08 2.2E-13 93.5 6.4 162 183-362 13-193 (259)
382 KOG1486 GTP-binding protein DR 98.8 1.3E-08 2.7E-13 95.8 7.1 89 200-334 63-151 (364)
383 PRK13644 cbiO cobalt transport 98.8 7E-09 1.5E-13 103.6 5.9 157 190-363 17-197 (274)
384 PRK09493 glnQ glutamine ABC tr 98.8 1.2E-08 2.6E-13 99.9 7.4 156 190-362 16-196 (240)
385 cd03213 ABCG_EPDR ABCG transpo 98.8 3.4E-08 7.4E-13 93.4 10.1 142 189-362 23-171 (194)
386 PRK11264 putative amino-acid A 98.8 1.5E-08 3.2E-13 99.9 7.8 155 190-361 18-203 (250)
387 PRK11607 potG putrescine trans 98.8 1.9E-08 4.1E-13 104.7 8.9 155 190-361 34-209 (377)
388 TIGR03864 PQQ_ABC_ATP ABC tran 98.8 1.7E-08 3.6E-13 98.7 8.1 158 190-364 16-195 (236)
389 cd03257 ABC_NikE_OppD_transpor 98.8 1.7E-08 3.7E-13 97.9 8.1 157 190-363 20-207 (228)
390 PRK13650 cbiO cobalt transport 98.8 1.1E-08 2.3E-13 102.6 6.8 157 190-363 22-202 (279)
391 KOG0084 GTPase Rab1/YPT1, smal 98.8 3.1E-08 6.6E-13 90.3 8.9 151 199-405 9-162 (205)
392 PRK14247 phosphate ABC transpo 98.8 2.2E-08 4.7E-13 98.7 8.8 159 190-361 18-204 (250)
393 KOG2655 Septin family protein 98.8 3.9E-08 8.6E-13 99.0 10.6 150 200-381 22-187 (366)
394 cd03216 ABC_Carb_Monos_I This 98.8 1.6E-08 3.4E-13 92.9 7.2 124 190-362 15-142 (163)
395 PRK14273 phosphate ABC transpo 98.8 1.8E-08 4E-13 99.5 8.2 160 190-363 22-210 (254)
396 TIGR03005 ectoine_ehuA ectoine 98.8 1.6E-08 3.5E-13 99.8 7.8 156 190-362 15-207 (252)
397 COG4181 Predicted ABC-type tra 98.8 2.8E-08 6.1E-13 88.7 8.1 157 189-360 24-205 (228)
398 cd03222 ABC_RNaseL_inhibitor T 98.8 3.7E-08 8.1E-13 91.4 9.4 108 195-361 21-131 (177)
399 TIGR02142 modC_ABC molybdenum 98.7 2.1E-08 4.5E-13 103.9 8.4 152 195-363 19-193 (354)
400 PRK11022 dppD dipeptide transp 98.7 1.7E-08 3.6E-13 103.3 7.5 162 189-363 21-215 (326)
401 TIGR01277 thiQ thiamine ABC tr 98.7 2E-08 4.4E-13 96.4 7.7 152 195-363 20-190 (213)
402 cd03369 ABCC_NFT1 Domain 2 of 98.7 2.2E-08 4.7E-13 95.8 7.8 151 190-363 23-185 (207)
403 PRK10575 iron-hydroxamate tran 98.7 1.3E-08 2.9E-13 101.2 6.5 157 190-363 26-209 (265)
404 COG4148 ModC ABC-type molybdat 98.7 4.1E-08 8.8E-13 94.3 9.4 151 199-364 24-191 (352)
405 PRK13637 cbiO cobalt transport 98.7 1.5E-08 3.2E-13 101.9 6.9 158 189-363 21-206 (287)
406 TIGR01978 sufC FeS assembly AT 98.7 1.8E-08 3.8E-13 98.9 7.3 159 190-363 15-205 (243)
407 PRK15439 autoinducer 2 ABC tra 98.7 8.6E-09 1.9E-13 112.2 5.5 157 190-363 26-201 (510)
408 TIGR03410 urea_trans_UrtE urea 98.7 9.4E-09 2E-13 100.0 5.2 158 189-363 14-193 (230)
409 PRK13652 cbiO cobalt transport 98.7 1.4E-08 3.1E-13 101.6 6.5 157 190-363 19-199 (277)
410 cd03260 ABC_PstB_phosphate_tra 98.7 1.7E-08 3.7E-13 98.0 6.8 158 190-361 15-199 (227)
411 PRK11614 livF leucine/isoleuci 98.7 9E-09 1.9E-13 100.6 4.8 155 190-361 20-196 (237)
412 PRK11831 putative ABC transpor 98.7 3E-08 6.6E-13 98.8 8.6 155 190-361 22-203 (269)
413 TIGR03873 F420-0_ABC_ATP propo 98.7 2.1E-08 4.5E-13 99.2 7.4 157 190-363 16-198 (256)
414 PRK13648 cbiO cobalt transport 98.7 2.9E-08 6.3E-13 98.9 8.5 157 190-363 24-204 (269)
415 PRK11231 fecE iron-dicitrate t 98.7 1.6E-08 3.5E-13 100.0 6.5 157 189-362 16-198 (255)
416 PRK09700 D-allose transporter 98.7 1.4E-08 3.1E-13 110.5 6.7 157 190-363 20-206 (510)
417 cd03300 ABC_PotA_N PotA is an 98.7 4.7E-08 1E-12 95.3 9.6 156 190-362 15-191 (232)
418 PRK10771 thiQ thiamine transpo 98.7 3.2E-08 7E-13 96.4 8.5 152 195-363 21-191 (232)
419 PRK13643 cbiO cobalt transport 98.7 2E-08 4.3E-13 101.1 7.1 156 190-363 21-205 (288)
420 PRK13646 cbiO cobalt transport 98.7 1.5E-08 3.3E-13 101.9 6.3 157 189-363 21-207 (286)
421 PRK10619 histidine/lysine/argi 98.7 2.7E-08 5.9E-13 98.5 8.0 156 190-362 20-212 (257)
422 cd03217 ABC_FeS_Assembly ABC-t 98.7 2.1E-08 4.5E-13 95.4 6.9 137 190-362 15-164 (200)
423 PRK10247 putative ABC transpor 98.7 2.8E-08 6.2E-13 96.3 7.9 156 190-363 22-199 (225)
424 COG4917 EutP Ethanolamine util 98.7 4.2E-08 9E-13 82.6 7.7 132 201-405 3-136 (148)
425 TIGR00972 3a0107s01c2 phosphat 98.7 2.6E-08 5.6E-13 98.0 7.7 159 190-362 16-203 (247)
426 PRK10762 D-ribose transporter 98.7 1.2E-08 2.5E-13 111.0 5.7 157 190-363 19-202 (501)
427 PLN03211 ABC transporter G-25; 98.7 2.5E-08 5.4E-13 111.1 8.3 159 190-363 83-267 (659)
428 TIGR02324 CP_lyasePhnL phospho 98.7 5.5E-08 1.2E-12 94.2 9.5 157 190-361 23-208 (224)
429 cd03228 ABCC_MRP_Like The MRP 98.7 5.5E-08 1.2E-12 90.0 9.1 130 190-363 17-156 (171)
430 PRK13548 hmuV hemin importer A 98.7 3.1E-08 6.8E-13 98.1 7.9 155 190-361 17-200 (258)
431 cd03295 ABC_OpuCA_Osmoprotecti 98.7 3.4E-08 7.3E-13 96.9 8.0 155 190-361 16-195 (242)
432 PRK15079 oligopeptide ABC tran 98.7 2E-08 4.3E-13 102.8 6.5 158 189-363 35-223 (331)
433 PRK13632 cbiO cobalt transport 98.7 2.8E-08 6.1E-13 99.1 7.5 157 190-363 24-204 (271)
434 cd03290 ABCC_SUR1_N The SUR do 98.7 3.9E-08 8.4E-13 94.8 8.1 156 190-364 16-204 (218)
435 cd03214 ABC_Iron-Siderophores_ 98.7 5E-08 1.1E-12 91.1 8.6 136 190-363 14-159 (180)
436 PRK14242 phosphate transporter 98.7 4.3E-08 9.3E-13 96.8 8.6 160 190-363 21-209 (253)
437 COG5257 GCD11 Translation init 98.7 6.7E-08 1.5E-12 94.2 9.6 180 198-405 9-192 (415)
438 PRK10253 iron-enterobactin tra 98.7 2.7E-08 5.8E-13 99.0 7.1 157 190-363 22-205 (265)
439 PRK13641 cbiO cobalt transport 98.7 2.6E-08 5.7E-13 100.2 7.0 155 190-361 22-204 (287)
440 PRK13631 cbiO cobalt transport 98.7 2.8E-08 6.1E-13 101.3 7.2 158 190-363 41-237 (320)
441 cd03234 ABCG_White The White s 98.7 7E-08 1.5E-12 93.6 9.6 160 189-362 21-203 (226)
442 PRK13638 cbiO cobalt transport 98.7 3.1E-08 6.6E-13 98.9 7.2 157 190-363 16-197 (271)
443 cd03237 ABC_RNaseL_inhibitor_d 98.7 4.2E-08 9.2E-13 96.3 8.0 146 194-362 20-176 (246)
444 PRK09984 phosphonate/organopho 98.7 3.7E-08 8.1E-13 97.8 7.7 160 190-363 19-214 (262)
445 cd03247 ABCC_cytochrome_bd The 98.7 5.7E-08 1.2E-12 90.6 8.3 132 190-363 17-158 (178)
446 TIGR03522 GldA_ABC_ATP gliding 98.7 2.4E-08 5.2E-13 101.2 6.2 154 190-361 17-191 (301)
447 TIGR03771 anch_rpt_ABC anchore 98.7 5.8E-08 1.3E-12 94.0 8.6 150 196-362 3-173 (223)
448 PRK09473 oppD oligopeptide tra 98.7 2.6E-08 5.5E-13 102.1 6.4 161 189-363 30-223 (330)
449 CHL00131 ycf16 sulfate ABC tra 98.7 4.2E-08 9E-13 96.8 7.7 159 190-363 22-212 (252)
450 cd03297 ABC_ModC_molybdenum_tr 98.7 3.3E-08 7.1E-13 95.1 6.8 149 197-363 22-193 (214)
451 COG1122 CbiO ABC-type cobalt t 98.7 1.7E-08 3.7E-13 97.6 4.8 167 181-365 11-202 (235)
452 cd05027 S-100B S-100B: S-100B 98.7 1.5E-07 3.3E-12 76.6 9.6 73 15-87 6-87 (88)
453 PF13499 EF-hand_7: EF-hand do 98.7 6.3E-08 1.4E-12 74.4 7.0 60 18-77 1-66 (66)
454 PRK14268 phosphate ABC transpo 98.7 4.3E-08 9.3E-13 97.1 7.6 159 190-362 27-213 (258)
455 PRK10982 galactose/methyl gala 98.7 3.6E-08 7.7E-13 107.0 7.6 157 190-363 13-195 (491)
456 PRK13549 xylose transporter AT 98.7 3.5E-08 7.5E-13 107.4 7.5 160 189-363 19-204 (506)
457 PRK09700 D-allose transporter 98.7 4.1E-08 8.8E-13 107.0 8.0 156 190-362 278-469 (510)
458 KOG0093 GTPase Rab3, small G p 98.7 2.5E-07 5.3E-12 80.0 10.9 156 192-404 14-172 (193)
459 PRK13634 cbiO cobalt transport 98.7 2.9E-08 6.2E-13 100.0 6.2 158 189-363 21-207 (290)
460 cd01849 YlqF_related_GTPase Yl 98.7 3.9E-08 8.6E-13 89.5 6.5 41 198-240 99-139 (155)
461 PRK11288 araG L-arabinose tran 98.7 4.1E-08 8.9E-13 106.7 7.7 157 190-363 19-201 (501)
462 cd03223 ABCD_peroxisomal_ALDP 98.7 1.5E-07 3.4E-12 86.6 10.4 127 190-361 16-147 (166)
463 COG4108 PrfC Peptide chain rel 98.7 1.3E-07 2.8E-12 95.9 10.4 135 198-367 11-148 (528)
464 COG0050 TufB GTPases - transla 98.7 2E-07 4.2E-12 89.9 11.1 150 200-388 13-164 (394)
465 PRK14267 phosphate ABC transpo 98.7 5.6E-08 1.2E-12 96.0 7.8 159 190-361 19-207 (253)
466 PRK14235 phosphate transporter 98.7 8.7E-08 1.9E-12 95.4 9.2 158 190-361 34-221 (267)
467 cd03245 ABCC_bacteriocin_expor 98.7 4.8E-08 1E-12 94.3 7.2 155 190-363 19-200 (220)
468 PRK10261 glutathione transport 98.7 3.2E-08 6.9E-13 110.2 6.7 165 189-363 30-230 (623)
469 PRK14241 phosphate transporter 98.6 6.6E-08 1.4E-12 95.8 8.3 160 190-362 19-207 (258)
470 TIGR02633 xylG D-xylose ABC tr 98.6 4.7E-08 1E-12 106.3 7.8 159 190-363 16-202 (500)
471 PRK13640 cbiO cobalt transport 98.6 4.6E-08 9.9E-13 98.2 7.1 160 190-363 22-205 (282)
472 cd03244 ABCC_MRP_domain2 Domai 98.6 4.3E-08 9.4E-13 94.7 6.7 152 190-361 19-197 (221)
473 PRK15056 manganese/iron transp 98.6 6.4E-08 1.4E-12 96.6 8.1 157 190-363 22-203 (272)
474 KOG1547 Septin CDC10 and relat 98.6 1.4E-07 3.1E-12 88.2 9.6 143 200-379 47-211 (336)
475 PRK09544 znuC high-affinity zi 98.6 6.1E-08 1.3E-12 95.5 7.7 151 190-363 19-182 (251)
476 cd03250 ABCC_MRP_domain1 Domai 98.6 5.4E-08 1.2E-12 92.8 7.1 34 190-223 20-55 (204)
477 PRK14271 phosphate ABC transpo 98.6 7.1E-08 1.5E-12 96.5 8.2 159 190-362 36-222 (276)
478 PRK13649 cbiO cobalt transport 98.6 4.3E-08 9.3E-13 98.3 6.6 155 190-362 22-205 (280)
479 PRK14257 phosphate ABC transpo 98.6 7E-08 1.5E-12 98.7 8.2 160 190-363 97-285 (329)
480 PRK11288 araG L-arabinose tran 98.6 6.1E-08 1.3E-12 105.4 8.2 157 190-363 268-457 (501)
481 PRK14246 phosphate ABC transpo 98.6 1E-07 2.2E-12 94.4 9.1 162 190-363 25-213 (257)
482 TIGR00968 3a0106s01 sulfate AB 98.6 6.5E-08 1.4E-12 94.6 7.6 156 190-362 15-191 (237)
483 PRK14256 phosphate ABC transpo 98.6 9.1E-08 2E-12 94.4 8.7 159 190-361 19-206 (252)
484 PRK13642 cbiO cobalt transport 98.6 5.7E-08 1.2E-12 97.3 7.2 158 190-364 22-203 (277)
485 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.6 1.3E-07 2.9E-12 84.9 8.8 109 190-362 15-127 (144)
486 KOG0461 Selenocysteine-specifi 98.6 4.3E-07 9.3E-12 89.2 12.8 163 200-400 8-174 (522)
487 PRK15093 antimicrobial peptide 98.6 7.9E-08 1.7E-12 98.6 8.2 161 189-362 21-219 (330)
488 KOG0468 U5 snRNP-specific prot 98.6 9E-08 2E-12 100.9 8.6 131 200-365 129-262 (971)
489 TIGR02982 heterocyst_DevA ABC 98.6 5.9E-08 1.3E-12 93.7 6.8 155 190-361 20-201 (220)
490 cd03299 ABC_ModC_like Archeal 98.6 7.9E-08 1.7E-12 93.8 7.6 155 190-361 14-189 (235)
491 COG3276 SelB Selenocysteine-sp 98.6 2.6E-07 5.6E-12 94.3 11.5 150 201-405 2-152 (447)
492 PRK13639 cbiO cobalt transport 98.6 7E-08 1.5E-12 96.5 7.4 157 190-363 17-198 (275)
493 PRK14250 phosphate ABC transpo 98.6 6.5E-08 1.4E-12 94.8 7.0 154 190-361 18-191 (241)
494 PRK11308 dppF dipeptide transp 98.6 8.7E-08 1.9E-12 98.0 8.2 158 189-363 29-216 (327)
495 cd01855 YqeH YqeH. YqeH is an 98.6 6.2E-08 1.4E-12 91.3 6.6 42 199-240 127-174 (190)
496 PRK15134 microcin C ABC transp 98.6 6.8E-08 1.5E-12 105.7 7.8 163 189-363 23-218 (529)
497 COG1134 TagH ABC-type polysacc 98.6 4.8E-08 1E-12 92.7 5.6 149 189-361 41-206 (249)
498 TIGR02769 nickel_nikE nickel i 98.6 5.6E-08 1.2E-12 96.7 6.5 157 190-363 26-212 (265)
499 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 6.2E-08 1.3E-12 86.7 6.0 37 201-239 85-121 (141)
500 PRK09580 sufC cysteine desulfu 98.6 8.1E-08 1.8E-12 94.5 7.4 159 190-363 16-206 (248)
No 1
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-85 Score=630.12 Aligned_cols=388 Identities=62% Similarity=1.055 Sum_probs=379.8
Q ss_pred CchhhHHHHHHHHHHHHhhchhhhhhhccCCccccccCCCCCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcc
Q 008954 155 PPSAVTSIIDGLKRLYSEKLKPLEATYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPT 234 (547)
Q Consensus 155 ~~~~~~~~id~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~ 234 (547)
.......+.++|+++|.++++|||..|+|++|+++++.+.+|+.+|+|+++|+++.|||||||+|++.++||+.+|++||
T Consensus 14 ~~~~~~tv~~glkrlY~~kl~PLE~~Yrf~df~sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPT 93 (532)
T KOG1954|consen 14 NPEVLQTVSEGLKRLYKQKLLPLEELYRFHDFHSPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPT 93 (532)
T ss_pred CcchHHHHHHHHHHHHHHhcccHHHHHhhhhcccccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCC
Confidence 44566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHH
Q 008954 235 TDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTG 314 (547)
Q Consensus 235 T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~ 314 (547)
|++|.++|+|+.+..+||++++++...+|++++.||+.|++++.|.++|+++|+++++|||||++++++|+++|+|+|.+
T Consensus 94 td~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~ 173 (532)
T KOG1954|consen 94 TDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTG 173 (532)
T ss_pred cceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEE
Q 008954 315 VISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVY 394 (547)
Q Consensus 315 ~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~ 394 (547)
+++|+++++|.||+++|++++++++++.++|..++.+..++.||+||+|.++.++++++++++||+++++++++++.++|
T Consensus 174 v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~rvY 253 (532)
T KOG1954|consen 174 VLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVSRVY 253 (532)
T ss_pred HHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCCCcchHhhHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHH
Q 008954 395 IGSFNDKPINGEVVGPIGQELFEKEQDDLLMDLIDIPKKACDRQINEFVKRARAAKIHAYIISHLKKEMPTMMGKAKAQQ 474 (547)
Q Consensus 395 isa~~~~~l~~~~~~~~~~~~~~~~~e~l~~~l~~~~~~~~~~~i~~~~~~~~~~~i~a~i~~~~~~~~~~~~gk~~~~~ 474 (547)
++|+|..++.+ +..+.+|+.++.+++++++.+|..++.++++++++|++++++||+|+.+++++||.++||.+++.
T Consensus 254 igSfw~hPl~~----~a~rrLfeaee~dl~rDlq~lp~ka~~rKind~ikrAr~akvHAyiis~lkkemp~~~gk~~~kk 329 (532)
T KOG1954|consen 254 IGSFWDHPLQD----PANRRLFEAEEQDLFRDLQTLPRKAALRKLNDLIKRARLAKVHAYIISCLKKEMPSVFGKEKKKK 329 (532)
T ss_pred eeccccCcccC----ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHH
Confidence 99999999986 56789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCccccCChHHHHHHHHHHHhhHHHHhhhhcCCC
Q 008954 475 RLIDNLEDEFAKVQREFHLPGGDFPNVEHFREVLNSYNIDKFEKLKPKMIQVVDDMLAYEIPELLKNFRNPY 546 (547)
Q Consensus 475 ~~i~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (547)
+++.+|.+||.++++++++++||||++++||++|+.++|++|+.|++++|+.+|+||++|||+||..+++++
T Consensus 330 ~lidnl~~iy~~l~re~~Is~gDfPd~~~mre~l~~~df~kF~~lkpklle~vD~mla~di~~Lm~~~kkee 401 (532)
T KOG1954|consen 330 RLIDNLIDIYEKLQREHNISPGDFPDVEKMREFLQTQDFSKFKPLKPKLLEVVDDMLAYDIAELMGKIKKEE 401 (532)
T ss_pred HHHHhHHHHHHHHhHhhcCCCcCCCCHHHHHHHHhcCChhhccccCccHHHHHHHHHHhhHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=9.3e-39 Score=307.04 Aligned_cols=229 Identities=25% Similarity=0.371 Sum_probs=193.2
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+|+|+||+|||||+|+|+|.++ +++|+.|+|||..+ .|+.+.++
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I-----------------------~GI~t~~~-------- 53 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRI-----------------------RGIVTTDN-------- 53 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhhe-----------------------eEEEEcCC--------
Confidence 4699999999999999999999999 99999999999876 35555555
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
.++.|+||||+..+ +..+.+.+ ...+...+.++|+|+|++|+.+ +....+..+++.++....|+++++
T Consensus 54 --------~QiIfvDTPGih~p-k~~l~~~m--~~~a~~sl~dvDlilfvvd~~~-~~~~~d~~il~~lk~~~~pvil~i 121 (298)
T COG1159 54 --------AQIIFVDTPGIHKP-KHALGELM--NKAARSALKDVDLILFVVDADE-GWGPGDEFILEQLKKTKTPVILVV 121 (298)
T ss_pred --------ceEEEEeCCCCCCc-chHHHHHH--HHHHHHHhccCcEEEEEEeccc-cCCccHHHHHHHHhhcCCCeEEEE
Confidence 59999999999987 45555543 3467777999999999999987 566677888888888678999999
Q ss_pred ccCCCcChHH-HHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC-----CCCCCcchHhhHHHH-------------
Q 008954 360 NKADQVDTQQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING-----EVVGPIGQELFEKEQ------------- 420 (547)
Q Consensus 360 NK~D~~~~~~-l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~-----~~~~~~~~~~~~~~~------------- 420 (547)
||+|.+.++. +.... ..+....++.++ +++||++|.+++. ...+|+++++|++++
T Consensus 122 NKID~~~~~~~l~~~~----~~~~~~~~f~~i--vpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEi 195 (298)
T COG1159 122 NKIDKVKPKTVLLKLI----AFLKKLLPFKEI--VPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEI 195 (298)
T ss_pred EccccCCcHHHHHHHH----HHHHhhCCcceE--EEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHH
Confidence 9999998766 43332 233556677766 8999999998876 367899999999875
Q ss_pred --HHHHHHHhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHH
Q 008954 421 --DDLLMDLIDIPKKACDRQINEFVKR-ARAAKIHAYIISHLKKEMPTMMGKAKAQQRLIDN 479 (547)
Q Consensus 421 --e~l~~~l~~~~~~~~~~~i~~~~~~-~~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 479 (547)
|+++..++++.||++.+.|++|.++ .+.+++||.|++++.+|++++|||+|+++|.|+.
T Consensus 196 iREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~sQK~IiIGk~G~~iK~IG~ 257 (298)
T COG1159 196 IREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERESQKGIIIGKNGAMIKKIGT 257 (298)
T ss_pred HHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEecCCccceEECCCcHHHHHHHH
Confidence 7899999999999999999999986 5689999999999999999999999999999975
No 3
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.97 E-value=1.7e-33 Score=285.84 Aligned_cols=318 Identities=20% Similarity=0.249 Sum_probs=233.0
Q ss_pred HHHhhhCCCCCC-----cccHHHHHHHHhh--C--CCCHHHHHHHHHHHCCCCCCccCHHH--HH------HHHHHHHHH
Q 008954 21 EWFDIADSDGDG-----RITGNDATKFLGL--S--KLSRQELKQIWALADSKRQGFLDLAE--FV------TAMKLVSLA 83 (547)
Q Consensus 21 ~~F~~~D~~~~G-----~Is~~e~~~~l~~--~--~l~~~~l~~i~~~~d~~~~g~l~~~e--F~------~~~~lv~~~ 83 (547)
.+|++..+.+.| +|||.+...+..+ . ..+.+....+-...|.++. .||-.- || .....++.+
T Consensus 6 TI~AiaTa~g~~aI~IvRiSGp~a~~ia~~i~~~~~~~~~r~a~y~~i~d~~~~-~iDe~lvl~f~aP~SFTGEDvvEi~ 84 (454)
T COG0486 6 TIAAIATAPGEGAIGIVRISGPDALEIAQKLFGGLKLPKPRTAHYGHIKDENGE-IIDEVLVLYFKAPNSFTGEDVVEIQ 84 (454)
T ss_pred cEEEEccCCCCceEEEEEecCHhHHHHHHHHhCCCCCCCCcEEEEEEEEcCCCc-EeeeeeEEEEeCCCCcccccEEEEE
Confidence 567777888888 8899998888877 2 2233332222223332221 333221 22 234566667
Q ss_pred hcCCCCCchhhc------------------cCCCCCCCCCCCCCCccchhhhccccCCCCCCCcCCCcccccccchhhhh
Q 008954 84 QAGREITSDILK------------------SGGLMENTEPPSMEGLETFVAKNKGLKMDSKPAVNGSASVQSQILSSAQW 145 (547)
Q Consensus 84 q~g~~~~~~~~~------------------~~~~~~~~~lp~~~~~~~~i~a~~~~~~~~a~~~~~~~~~g~~~~~~~~~ 145 (547)
+||+++..+.+. +||+|+|+||.++|++.|+|.|+++.+++.|.++ + +|.++..+..|
T Consensus 85 ~HGg~~v~~~iL~~~l~~GaR~AepGEFs~RAFLNgK~DLtqAEai~dLI~A~te~a~r~A~~~---l-~G~ls~~i~~l 160 (454)
T COG0486 85 CHGGPVVVNLILELLLKLGARLAEPGEFSKRAFLNGKLDLTQAEAIADLIDAKTEQAARIALRQ---L-QGALSQLINEL 160 (454)
T ss_pred cCCCHHHHHHHHHHHHHcCCeecCCCcchHHHHhcCCccHHHHHHHHHHHhCCCHHHHHHHHHH---c-CCcHHHHHHHH
Confidence 777765444333 2599999999999999999999999999999999 7 99999999999
Q ss_pred ccccccCCCCchhhHHHHHH----HH----HHHHhhchhhhhhhccCCccccccCCCCCCCCcEEEEeeCCCCChhHHHH
Q 008954 146 FTSKSVKKTPPSAVTSIIDG----LK----RLYSEKLKPLEATYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTTFIK 217 (547)
Q Consensus 146 ~~~~~~~~~~~~~~~~~id~----l~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~V~lvG~~~aGKSTLiN 217 (547)
++ .+++ ..+.+|+.||. +. .....+++.+.+. +..+...+-.+..++.|..|+|+|+||||||||+|
T Consensus 161 r~-~li~--~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~--l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLN 235 (454)
T COG0486 161 RE-ALLE--LLAQVEANIDFPEEDIEELVLEKIREKLEELIAE--LDELLATAKQGKILREGLKVVIIGRPNVGKSSLLN 235 (454)
T ss_pred HH-HHHH--HHHHheEeCCCCcccccchhHHHHHHHHHHHHHH--HHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHH
Confidence 99 8988 89999999882 21 2344555555555 55666666677788899999999999999999999
Q ss_pred HHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhcccccccccceEEcCCC
Q 008954 218 HLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPG 297 (547)
Q Consensus 218 ~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG 297 (547)
+|++++. ++|++.|+|||..+ ++.+.+.|+ .+.++||+|
T Consensus 236 aL~~~d~--AIVTdI~GTTRDvi-----------------ee~i~i~G~----------------------pv~l~DTAG 274 (454)
T COG0486 236 ALLGRDR--AIVTDIAGTTRDVI-----------------EEDINLNGI----------------------PVRLVDTAG 274 (454)
T ss_pred HHhcCCc--eEecCCCCCccceE-----------------EEEEEECCE----------------------EEEEEecCC
Confidence 9999999 99999999999887 444445564 899999999
Q ss_pred CCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHH
Q 008954 298 VLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGAL 377 (547)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l 377 (547)
++... +.+++. . .+.++..+..||+||+++|++.+ .+.++..++. +...++|+++|+||+|+.+.......
T Consensus 275 iRet~-d~VE~i-G-IeRs~~~i~~ADlvL~v~D~~~~-~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~---- 345 (454)
T COG0486 275 IRETD-DVVERI-G-IERAKKAIEEADLVLFVLDASQP-LDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE---- 345 (454)
T ss_pred cccCc-cHHHHH-H-HHHHHHHHHhCCEEEEEEeCCCC-CchhhHHHHH-hcccCCCEEEEEechhcccccccchh----
Confidence 99763 334421 1 23567779999999999999983 5666677777 44557899999999999976542221
Q ss_pred HHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 378 MWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 378 ~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+.. .....+++|+++++|++.
T Consensus 346 -----~~~--~~~~~i~iSa~t~~Gl~~ 366 (454)
T COG0486 346 -----KLA--NGDAIISISAKTGEGLDA 366 (454)
T ss_pred -----hcc--CCCceEEEEecCccCHHH
Confidence 111 122347999999999875
No 4
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.95 E-value=6.3e-30 Score=254.67 Aligned_cols=227 Identities=20% Similarity=0.258 Sum_probs=170.7
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|||||||+|+|+|..+ +.+++.|.||+..+. ++...++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~-----------------------~i~~~~~--------- 47 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRIS-----------------------GIHTTGA--------- 47 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEE-----------------------EEEEcCC---------
Confidence 599999999999999999999997 889999999886441 1111111
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEec
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLN 360 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlN 360 (547)
.++.|+||||+.... ....+. +...+...+..+|++++++|+++. .+.+ ..++..+...+.|+++|+|
T Consensus 48 -------~qii~vDTPG~~~~~-~~l~~~--~~~~~~~~l~~aDvvl~VvD~~~~-~~~~-~~i~~~l~~~~~p~ilV~N 115 (270)
T TIGR00436 48 -------SQIIFIDTPGFHEKK-HSLNRL--MMKEARSAIGGVDLILFVVDSDQW-NGDG-EFVLTKLQNLKRPVVLTRN 115 (270)
T ss_pred -------cEEEEEECcCCCCCc-chHHHH--HHHHHHHHHhhCCEEEEEEECCCC-CchH-HHHHHHHHhcCCCEEEEEE
Confidence 378999999997642 112111 123455668999999999999873 3332 4566667777899999999
Q ss_pred cCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCCC-----CCCCcchHhhHHHH---------------
Q 008954 361 KADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINGE-----VVGPIGQELFEKEQ--------------- 420 (547)
Q Consensus 361 K~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~~-----~~~~~~~~~~~~~~--------------- 420 (547)
|+|+...+++......+ .....+.. .+++||++|.|+++. ..+|+++|+|+.++
T Consensus 116 K~Dl~~~~~~~~~~~~~----~~~~~~~~--v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ir 189 (270)
T TIGR00436 116 KLDNKFKDKLLPLIDKY----AILEDFKD--IVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIR 189 (270)
T ss_pred CeeCCCHHHHHHHHHHH----HhhcCCCc--eEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHH
Confidence 99998765544433332 22233333 489999999998872 45677777776542
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccccHHHHHHHHHH
Q 008954 421 DDLLMDLIDIPKKACDRQINEFVKRA-RAAKIHAYIISHLKKEMPTMMGKAKAQQRLIDN 479 (547)
Q Consensus 421 e~l~~~l~~~~~~~~~~~i~~~~~~~-~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 479 (547)
|+++..++++.||++.+.+++|.++. +.++|+|.|++++++|++++||++|.+++.|+.
T Consensus 190 e~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~~~s~k~iiig~~g~~ik~i~~ 249 (270)
T TIGR00436 190 EKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERESQKKIIIGKNGSMIKAIGI 249 (270)
T ss_pred HHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEECcCCceeEEEcCCcHHHHHHHH
Confidence 78888998888899999999998754 467899999999999999999999999999976
No 5
>PRK00089 era GTPase Era; Reviewed
Probab=99.95 E-value=4.4e-29 Score=251.87 Aligned_cols=228 Identities=24% Similarity=0.374 Sum_probs=175.2
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+|+|++|||||||+|+|+|..+ +.+++.|.|++..+. ++...++
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~--~~vs~~~~tt~~~i~-----------------------~i~~~~~-------- 52 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRHRIR-----------------------GIVTEDD-------- 52 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCce--eecCCCCCcccccEE-----------------------EEEEcCC--------
Confidence 4699999999999999999999998 889999988876542 1111111
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
.++.|+||||+.... ....+. +...+...+..+|++++++|+.+ ..+.....++..+...+.|+++|+
T Consensus 53 --------~qi~~iDTPG~~~~~-~~l~~~--~~~~~~~~~~~~D~il~vvd~~~-~~~~~~~~i~~~l~~~~~pvilVl 120 (292)
T PRK00089 53 --------AQIIFVDTPGIHKPK-RALNRA--MNKAAWSSLKDVDLVLFVVDADE-KIGPGDEFILEKLKKVKTPVILVL 120 (292)
T ss_pred --------ceEEEEECCCCCCch-hHHHHH--HHHHHHHHHhcCCEEEEEEeCCC-CCChhHHHHHHHHhhcCCCEEEEE
Confidence 379999999998753 222211 12345566899999999999987 556666777887777678999999
Q ss_pred ccCCCc-ChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCCC-----CCCCcchHhhHHH--------------
Q 008954 360 NKADQV-DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINGE-----VVGPIGQELFEKE-------------- 419 (547)
Q Consensus 360 NK~D~~-~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~~-----~~~~~~~~~~~~~-------------- 419 (547)
||+|+. +.+++......+ .+..++..+ +++||+++.++++. ..+++++++|+.+
T Consensus 121 NKiDl~~~~~~l~~~~~~l----~~~~~~~~i--~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~Ei 194 (292)
T PRK00089 121 NKIDLVKDKEELLPLLEEL----SELMDFAEI--VPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEI 194 (292)
T ss_pred ECCcCCCCHHHHHHHHHHH----HhhCCCCeE--EEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 999998 445555555444 232333333 79999999988762 4566677777654
Q ss_pred -HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHH
Q 008954 420 -QDDLLMDLIDIPKKACDRQINEFVKRARAAKIHAYIISHLKKEMPTMMGKAKAQQRLIDN 479 (547)
Q Consensus 420 -~e~l~~~l~~~~~~~~~~~i~~~~~~~~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 479 (547)
+|+++..++++.||++.+.+++|.++ +.++|+|.|++++++|+++++|++|.+++.|+.
T Consensus 195 iRe~~~~~l~~e~p~~~~v~~~~~~~~-~~~~i~~~i~v~~~~~k~i~ig~~g~~i~~i~~ 254 (292)
T PRK00089 195 IREKLLRLLGDELPYSVAVEIEKFEER-GLVRIEATIYVERDSQKGIIIGKGGAMLKKIGT 254 (292)
T ss_pred HHHHHHhhCCccCCceEEEEEEEEEEC-CeEEEEEEEEEccCCceeEEEeCCcHHHHHHHH
Confidence 37888889888889999999999876 678899999999999999999999999999976
No 6
>PRK15494 era GTPase Era; Provisional
Probab=99.94 E-value=2.6e-28 Score=249.75 Aligned_cols=227 Identities=20% Similarity=0.308 Sum_probs=168.3
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
.|+++|.+|||||||+|.|+|..+ +.+++.++||+..+. +....++
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~-----------------------~~~~~~~--------- 99 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIIT-----------------------GIITLKD--------- 99 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEE-----------------------EEEEeCC---------
Confidence 899999999999999999999998 788898888764331 1111111
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEec
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLN 360 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlN 360 (547)
.++.|+||||+.... ..+... +...+...+..+|++|+|+|+.+ ........++..+...+.|.++|+|
T Consensus 100 -------~qi~~~DTpG~~~~~-~~l~~~--~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~IlViN 168 (339)
T PRK15494 100 -------TQVILYDTPGIFEPK-GSLEKA--MVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPIFLLN 168 (339)
T ss_pred -------eEEEEEECCCcCCCc-ccHHHH--HHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 378999999996432 112211 12233445789999999999876 4555556677777766778899999
Q ss_pred cCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC-----CCCCCcchHhhHHHH---------------
Q 008954 361 KADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING-----EVVGPIGQELFEKEQ--------------- 420 (547)
Q Consensus 361 K~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~-----~~~~~~~~~~~~~~~--------------- 420 (547)
|+|+... .+...... +.....+ ...+++||++|.|+++ ...+|+++|+|++++
T Consensus 169 KiDl~~~-~~~~~~~~----l~~~~~~--~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiR 241 (339)
T PRK15494 169 KIDIESK-YLNDIKAF----LTENHPD--SLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITR 241 (339)
T ss_pred hhcCccc-cHHHHHHH----HHhcCCC--cEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 9998643 22222111 1222222 2347999999999876 256788999988664
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccccHHHHHHHHHH
Q 008954 421 DDLLMDLIDIPKKACDRQINEFVKRA-RAAKIHAYIISHLKKEMPTMMGKAKAQQRLIDN 479 (547)
Q Consensus 421 e~l~~~l~~~~~~~~~~~i~~~~~~~-~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 479 (547)
|+++..+++++||++.+.|+.|.++. +.++|+|.|+|++.+|++++||++|.+++.|+.
T Consensus 242 e~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk~iiiG~~g~~ik~i~~ 301 (339)
T PRK15494 242 EQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYKTIILGKNGSKIKEIGA 301 (339)
T ss_pred HHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCceeEEEcCCcHHHHHHHH
Confidence 78899998888899999999998754 467899999999999999999999999999976
No 7
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.92 E-value=3.6e-27 Score=249.84 Aligned_cols=313 Identities=18% Similarity=0.193 Sum_probs=203.0
Q ss_pred HHHhhhCCCCCC-----cccHHHHHHHHhh-CC--CCHHHHHHHHHHHCCCCCCccCHHH--HH------HHHHHHHHHh
Q 008954 21 EWFDIADSDGDG-----RITGNDATKFLGL-SK--LSRQELKQIWALADSKRQGFLDLAE--FV------TAMKLVSLAQ 84 (547)
Q Consensus 21 ~~F~~~D~~~~G-----~Is~~e~~~~l~~-~~--l~~~~l~~i~~~~d~~~~g~l~~~e--F~------~~~~lv~~~q 84 (547)
.+|+...+.+.| +|||++...++.+ .+ .+.+....+-..+|. +..+|..- |+ .....++.++
T Consensus 6 TI~A~aT~~g~~~i~viRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iD~~l~~~f~~P~S~TGEd~vEi~~ 83 (449)
T PRK05291 6 TIAAIATPPGRGGIGIIRISGPDALEIAQKLFGKKLPKPRTAHYGHIRDP--GEVIDEVLVLYFPAPNSFTGEDVVEIQC 83 (449)
T ss_pred cEEEeccCCcCceEEEEEEEhHHHHHHHHHHhCCCCCCCcEEEEEEEecC--CcccceEEEEEecCCCCccCCcEEEEEC
Confidence 456667776666 7899988887776 22 222221111112231 11233211 11 2234566666
Q ss_pred cCCCCCchhhc------------------cCCCCCCCCCCCCCCccchhhhccccCCCCCCCcCCCcccccccchhhhhc
Q 008954 85 AGREITSDILK------------------SGGLMENTEPPSMEGLETFVAKNKGLKMDSKPAVNGSASVQSQILSSAQWF 146 (547)
Q Consensus 85 ~g~~~~~~~~~------------------~~~~~~~~~lp~~~~~~~~i~a~~~~~~~~a~~~~~~~~~g~~~~~~~~~~ 146 (547)
||++...+.+. +||.|++|||.++|++.++|+|+++.|++.|+++ + +|.+++.+..||
T Consensus 84 HG~~~v~~~il~~l~~~g~r~A~pGEFt~RAflngk~dL~qaEai~~li~a~t~~~~~~al~~---l-~G~l~~~~~~~r 159 (449)
T PRK05291 84 HGGPAVLNLILELLLALGARLAEPGEFTKRAFLNGKLDLTQAEAIADLIDAKTEAAARLALRQ---L-QGALSKLINELR 159 (449)
T ss_pred CCCHHHHHHHHHHHHHcCCEEccCccchHHHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHHh---c-CcHHHHHHHHHH
Confidence 76665433332 2599999999999999999999999999999999 7 999999999999
Q ss_pred cccccCCCCchhhHHHHHHH--------HHHHHhhchhhhhhhccCCccccccCCCCCCCCcEEEEeeCCCCChhHHHHH
Q 008954 147 TSKSVKKTPPSAVTSIIDGL--------KRLYSEKLKPLEATYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTTFIKH 218 (547)
Q Consensus 147 ~~~~~~~~~~~~~~~~id~l--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~V~lvG~~~aGKSTLiN~ 218 (547)
+ .+++ ..+.+|+.||.- .+.+..++..+... ...+.........+..+.+|+++|.+|+|||||+|+
T Consensus 160 ~-~l~~--~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~--l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~ 234 (449)
T PRK05291 160 E-ELLE--LLALVEAAIDFPEEDIEFLSDEKILEKLEELIAE--LEALLASARQGEILREGLKVVIAGRPNVGKSSLLNA 234 (449)
T ss_pred H-HHHH--HHHHheEEccCCCCCcccccHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHH
Confidence 9 8888 778888777721 12223333333333 222222222233455778999999999999999999
Q ss_pred HHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhcccccccccceEEcCCCC
Q 008954 219 LLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGV 298 (547)
Q Consensus 219 Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~ 298 (547)
|+|.+. +++++.|+||+...... ..+.+ ..+.++||||+
T Consensus 235 L~~~~~--a~v~~~~gtT~d~~~~~-----------------i~~~g----------------------~~i~l~DT~G~ 273 (449)
T PRK05291 235 LLGEER--AIVTDIAGTTRDVIEEH-----------------INLDG----------------------IPLRLIDTAGI 273 (449)
T ss_pred HhCCCC--cccCCCCCcccccEEEE-----------------EEECC----------------------eEEEEEeCCCC
Confidence 999886 78888888886544110 00111 26899999999
Q ss_pred CChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHH
Q 008954 299 LSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALM 378 (547)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~ 378 (547)
.+.. ..++.. . ...+...+..+|++++|+|+++. .+.+..+++.. ..+.|+++|+||+|+.......
T Consensus 274 ~~~~-~~ie~~-g-i~~~~~~~~~aD~il~VvD~s~~-~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~------- 340 (449)
T PRK05291 274 RETD-DEVEKI-G-IERSREAIEEADLVLLVLDASEP-LTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE------- 340 (449)
T ss_pred CCCc-cHHHHH-H-HHHHHHHHHhCCEEEEEecCCCC-CChhHHHHHHh--cCCCCcEEEEEhhhccccchhh-------
Confidence 7531 222110 0 11244568999999999999873 34444555554 3468999999999997643321
Q ss_pred HhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 379 WSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 379 ~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
. . .....+++||++|.|+++
T Consensus 341 ----~-~--~~~~~i~iSAktg~GI~~ 360 (449)
T PRK05291 341 ----E-E--NGKPVIRISAKTGEGIDE 360 (449)
T ss_pred ----h-c--cCCceEEEEeeCCCCHHH
Confidence 0 1 112347999999999875
No 8
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.92 E-value=1.1e-26 Score=244.54 Aligned_cols=235 Identities=16% Similarity=0.165 Sum_probs=165.1
Q ss_pred HHHHHHHhcCCCCCchhhc------------------cCCCCCCCCCCCCCCccchhhhccccCCCCCCCcCCCcccccc
Q 008954 77 MKLVSLAQAGREITSDILK------------------SGGLMENTEPPSMEGLETFVAKNKGLKMDSKPAVNGSASVQSQ 138 (547)
Q Consensus 77 ~~lv~~~q~g~~~~~~~~~------------------~~~~~~~~~lp~~~~~~~~i~a~~~~~~~~a~~~~~~~~~g~~ 138 (547)
...++.++||++...+.+. +||.|+||||.|+|++.++|+|+++.++++|+++ + +|.+
T Consensus 68 EDvvEi~~HGg~~v~~~il~~l~~~g~R~A~pGEFT~RAflNGk~DL~qaEav~dlI~a~t~~~~~~A~~~---l-~G~l 143 (442)
T TIGR00450 68 EDVIEIQCHGSMLIVQEILQLCLKSGARLAQPGEFTQRAFLNGKMDLTQAEAINELILAPNNKVKDIALNK---L-AGEL 143 (442)
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHcCCeEcCCchhhHHHHhcCCccHHHHHHHHHHHhCCCHHHHHHHHHh---c-CcHH
Confidence 4466666676665443332 2599999999999999999999999999999999 7 9999
Q ss_pred cchhhhhccccccCCCCchhhHHHHHHHH-----HHHHhhchhhhhhhccCCccccccCCCCCCCCcEEEEeeCCCCChh
Q 008954 139 ILSSAQWFTSKSVKKTPPSAVTSIIDGLK-----RLYSEKLKPLEATYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKT 213 (547)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~id~l~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~V~lvG~~~aGKS 213 (547)
+..+..||+ .++. ..+.+|+.||.-+ ......+..+... ...++... ....++.+..|+++|++|+|||
T Consensus 144 s~~~~~~r~-~l~~--~~a~iea~iDf~ee~~~~~~~~~~l~~~~~~--l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKS 217 (442)
T TIGR00450 144 DQKIEAIRK-SLLQ--LLAQVEVNIDYEEDDDEQDSLNQLLLSIIAE--LKDILNSY-KLEKLDDGFKLAIVGSPNVGKS 217 (442)
T ss_pred HHHHHHHHH-HHHH--HHHHeeEECCcCCCCccHHHHHHHHHHHHHH--HHHHHHHH-HHHHhhcCCEEEEECCCCCcHH
Confidence 999999999 8888 8888888887321 1112222222222 12222222 2234567889999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhcccccccccceEE
Q 008954 214 TFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMSHPLLDQVTFV 293 (547)
Q Consensus 214 TLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lv 293 (547)
||+|+|++.+. +++++.|+||+..+.. ...+.+ ..+.++
T Consensus 218 SLiN~L~~~~~--aivs~~pgtTrd~~~~-----------------~i~~~g----------------------~~v~l~ 256 (442)
T TIGR00450 218 SLLNALLKQDR--AIVSDIKGTTRDVVEG-----------------DFELNG----------------------ILIKLL 256 (442)
T ss_pred HHHHHHhCCCC--cccCCCCCcEEEEEEE-----------------EEEECC----------------------EEEEEe
Confidence 99999999886 7888889888765411 011112 267899
Q ss_pred cCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 294 DTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 294 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
||||+.... ..+++. . ...+...+..+|++++|+|+++. .+.+.. ++..+...+.|+++|+||+|+...
T Consensus 257 DTaG~~~~~-~~ie~~-g-i~~~~~~~~~aD~il~V~D~s~~-~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 257 DTAGIREHA-DFVERL-G-IEKSFKAIKQADLVIYVLDASQP-LTKDDF-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred eCCCcccch-hHHHHH-H-HHHHHHHHhhCCEEEEEEECCCC-CChhHH-HHHHHhhCCCCEEEEEECccCCCc
Confidence 999997532 111110 0 12345567899999999999873 343333 566666567899999999999654
No 9
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.91 E-value=8.5e-26 Score=215.53 Aligned_cols=235 Identities=17% Similarity=0.245 Sum_probs=173.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..||++|.||+|||||.|.++|..+ ++++.++.||+..+. |+.+-|.
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv--~~vS~K~~TTr~~il-----------------------gi~ts~e-------- 119 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKV--SAVSRKVHTTRHRIL-----------------------GIITSGE-------- 119 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCcc--ccccccccceeeeee-----------------------EEEecCc--------
Confidence 5799999999999999999999999 999999999988763 2323333
Q ss_pred hcccccccccceEEcCCCCCChhhhhhh-cccChHHHHHHHhhcCCeEEEEecCCC--CCCCHHHHHHHHHHhCCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQ-RTYDFTGVISWFAAKCDLILLLFDPHK--LDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~-~~~~~~~~~~~~~~~aD~illv~d~~~--~~~~~~~~~ll~~l~~~~~~ii 356 (547)
.++.|.||||+.+...++-. ....+.+-.+..+.+||+|++++|+++ -.+.......++... ..|-+
T Consensus 120 --------TQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys--~ips~ 189 (379)
T KOG1423|consen 120 --------TQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS--KIPSI 189 (379)
T ss_pred --------eEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh--cCCce
Confidence 48999999999986322211 112334456677899999999999984 234444444444433 47889
Q ss_pred EEeccCCCcChHH-HHHHHHHHHH-hh-------hh----------------ccCCCCcEEEEecccCCCCCCCC-----
Q 008954 357 VVLNKADQVDTQQ-LMRVYGALMW-SL-------GK----------------VLNTPEVVRVYIGSFNDKPINGE----- 406 (547)
Q Consensus 357 vVlNK~D~~~~~~-l~~~~~~l~~-~l-------~~----------------~~~~~~v~~v~isa~~~~~l~~~----- 406 (547)
+|+||+|...+.. ++.....+.. .+ .+ .-.+.++ |++||++|.|+++.
T Consensus 190 lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~v--F~vSaL~G~GikdlkqyLm 267 (379)
T KOG1423|consen 190 LVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERV--FMVSALYGEGIKDLKQYLM 267 (379)
T ss_pred eeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeE--EEEecccccCHHHHHHHHH
Confidence 9999999986542 3322221110 00 00 1112334 78999999999982
Q ss_pred CCCCcchHhhHHHH---------------HHHHHHHhhchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccccH
Q 008954 407 VVGPIGQELFEKEQ---------------DDLLMDLIDIPKKACDRQINEFVKRAR-AAKIHAYIISHLKKEMPTMMGKA 470 (547)
Q Consensus 407 ~~~~~~~~~~~~~~---------------e~l~~~l~~~~~~~~~~~i~~~~~~~~-~~~i~a~i~~~~~~~~~~~~gk~ 470 (547)
+.++.++|.|+++. |+++..+.++++|.++.++..|.++.. .++|...+++...++..++|||+
T Consensus 268 sqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~e~~~g~l~I~~~v~~pK~s~~klliGkg 347 (379)
T KOG1423|consen 268 SQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVPYNLQVRILSWKERPAGVLFIQVEVVCPKNSQKKLLIGKG 347 (379)
T ss_pred hcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccCcceEEEEEEeeecCCcEEEEEEEEEcCCCcceeEEEcCC
Confidence 56788888877542 789999988888999999999998754 78888889999999999999999
Q ss_pred HHHHHHHHH
Q 008954 471 KAQQRLIDN 479 (547)
Q Consensus 471 ~~~~~~i~~ 479 (547)
|.+++.|..
T Consensus 348 G~ki~qI~~ 356 (379)
T KOG1423|consen 348 GKKISQIGT 356 (379)
T ss_pred CccHHHHHH
Confidence 999998875
No 10
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6.6e-23 Score=207.76 Aligned_cols=219 Identities=16% Similarity=0.212 Sum_probs=159.2
Q ss_pred cCCCCCCCCCCCCCCccchhhhccccCCCCCCCcCCCcccccccchhhhhccccccCCCCchhhHHHHHH-----HHHHH
Q 008954 96 SGGLMENTEPPSMEGLETFVAKNKGLKMDSKPAVNGSASVQSQILSSAQWFTSKSVKKTPPSAVTSIIDG-----LKRLY 170 (547)
Q Consensus 96 ~~~~~~~~~lp~~~~~~~~i~a~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~id~-----l~~~~ 170 (547)
.+|.|+++++.+++++.++|.+.++.|+..|..+ + .|......+.|+. .++. ..+.+++.+|. +...+
T Consensus 165 Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~---v-~g~~~~l~~~~r~-~lIe--~~a~l~a~idf~e~~~l~~~~ 237 (531)
T KOG1191|consen 165 RAFLNGKLDLTQAEGIIDLIVAETESQRRAALDE---V-AGEALALCFGWRK-ILIE--ALAGLEARIDFEEERPLEEIE 237 (531)
T ss_pred hhhhccccchhhhcChhhhhhhhhHhhhhhhhhh---h-cchhHHhhhhHHH-HHHH--HHhccceeechhhcCchhhcc
Confidence 4799999999999999999999999999999998 7 8999888888999 8887 77888888873 22222
Q ss_pred Hhh----chhhhhhhccCCccccccCCCCCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCC
Q 008954 171 SEK----LKPLEATYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPD 246 (547)
Q Consensus 171 ~~~----~~~l~~~~~~~~~~~~~~~~~~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~ 246 (547)
... +..|... ...+...+-....++.|+.|+|+|+||+|||||+|+|+..++ ++|||.|+|||+.+
T Consensus 238 t~~~~~~~~~l~d~--v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDai------ 307 (531)
T KOG1191|consen 238 TVEIFIESLSLLDD--VLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAI------ 307 (531)
T ss_pred chhhhhHHHHHHHH--HHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhh------
Confidence 111 1111111 222222233344567899999999999999999999999999 99999999999877
Q ss_pred ccccCCceeeecCCCCCCCccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeE
Q 008954 247 ERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
+..+.+.| ..+.|+||+|++....+.++. +. ...++..+.+||+|
T Consensus 308 -----------ea~v~~~G----------------------~~v~L~DTAGiRe~~~~~iE~-~g-I~rA~k~~~~advi 352 (531)
T KOG1191|consen 308 -----------EAQVTVNG----------------------VPVRLSDTAGIREESNDGIEA-LG-IERARKRIERADVI 352 (531)
T ss_pred -----------eeEeecCC----------------------eEEEEEeccccccccCChhHH-Hh-HHHHHHHHhhcCEE
Confidence 44444555 389999999999721122221 11 23567779999999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHhC------------CCCeEEEEeccCCCcCh
Q 008954 327 LLLFDPHKLDISDEFKRVIASLRG------------NDDKIRVVLNKADQVDT 367 (547)
Q Consensus 327 llv~d~~~~~~~~~~~~ll~~l~~------------~~~~iivVlNK~D~~~~ 367 (547)
++++|+.. ..+.++..+.+.+.. ...+++++.||+|+..+
T Consensus 353 ~~vvda~~-~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 353 LLVVDAEE-SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred EEEecccc-cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 99999944 233333333333321 23688999999999865
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=1.5e-20 Score=191.24 Aligned_cols=162 Identities=18% Similarity=0.255 Sum_probs=123.3
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
.....|||+|.||+|||||+|+|+|+++ +++++.|+||+..+- ..+.+.+
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR--~Iv~~~aGTTRD~I~-----------------~~~e~~~----------- 225 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEER--VIVSDIAGTTRDSID-----------------IEFERDG----------- 225 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCce--EEecCCCCcccccee-----------------eeEEECC-----------
Confidence 3467899999999999999999999999 999999999998872 2222223
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHH--HHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVI--SWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK 354 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~--~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ 354 (547)
+.+.++||+|+... .++....++.++. ...+..+|++++++|++. ++++++.++...+.+.+++
T Consensus 226 -----------~~~~liDTAGiRrk--~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-~~~~qD~~ia~~i~~~g~~ 291 (444)
T COG1160 226 -----------RKYVLIDTAGIRRK--GKITESVEKYSVARTLKAIERADVVLLVIDATE-GISEQDLRIAGLIEEAGRG 291 (444)
T ss_pred -----------eEEEEEECCCCCcc--cccccceEEEeehhhHhHHhhcCEEEEEEECCC-CchHHHHHHHHHHHHcCCC
Confidence 47999999999864 3344333333344 444899999999999998 8899999999999999999
Q ss_pred EEEEeccCCCcCh--HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDT--QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~--~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|++.. .........+.. .-..+.++ +.+++||.+|.++..
T Consensus 292 ~vIvvNKWDl~~~~~~~~~~~k~~i~~-~l~~l~~a--~i~~iSA~~~~~i~~ 341 (444)
T COG1160 292 IVIVVNKWDLVEEDEATMEEFKKKLRR-KLPFLDFA--PIVFISALTGQGLDK 341 (444)
T ss_pred eEEEEEccccCCchhhHHHHHHHHHHH-HhccccCC--eEEEEEecCCCChHH
Confidence 9999999999875 233333333322 12233343 458999999999885
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=5.8e-20 Score=186.95 Aligned_cols=152 Identities=22% Similarity=0.334 Sum_probs=118.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
+.|||+|+||+|||||+|.|+|... ++|+..|++||..+... ..|.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~-----------------~~~~~-------------- 50 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGD-----------------AEWLG-------------- 50 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccce-----------------eEEcC--------------
Confidence 7899999999999999999999999 99999999999776211 11122
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
..+.+|||+|+.....+.+.+. ..+.+...+.+||++|||+|+.. ++++++.++.+.|+..++|+++|+
T Consensus 51 --------~~f~lIDTgGl~~~~~~~l~~~--i~~Qa~~Ai~eADvilfvVD~~~-Git~~D~~ia~~Lr~~~kpviLvv 119 (444)
T COG1160 51 --------REFILIDTGGLDDGDEDELQEL--IREQALIAIEEADVILFVVDGRE-GITPADEEIAKILRRSKKPVILVV 119 (444)
T ss_pred --------ceEEEEECCCCCcCCchHHHHH--HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEEE
Confidence 3699999999986433333322 23567888999999999999987 899999999999998789999999
Q ss_pred ccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 360 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 360 NK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
||+|....++... ..|+ +++.++ ++|||..|.|+.+
T Consensus 120 NK~D~~~~e~~~~----efys----lG~g~~--~~ISA~Hg~Gi~d 155 (444)
T COG1160 120 NKIDNLKAEELAY----EFYS----LGFGEP--VPISAEHGRGIGD 155 (444)
T ss_pred EcccCchhhhhHH----HHHh----cCCCCc--eEeehhhccCHHH
Confidence 9999885443222 1233 344555 7999999999876
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.79 E-value=3e-20 Score=167.09 Aligned_cols=148 Identities=24% Similarity=0.311 Sum_probs=100.8
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
.|+++|.||+|||||+|+|+|.. ..+++.|+||..... +...+++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~---~~v~n~pG~Tv~~~~-----------------------g~~~~~~--------- 46 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK---QKVGNWPGTTVEKKE-----------------------GIFKLGD--------- 46 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS---EEEEESTTSSSEEEE-----------------------EEEEETT---------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ceecCCCCCCeeeee-----------------------EEEEecC---------
Confidence 69999999999999999999999 778888888765431 1111111
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHh--hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA--AKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
..+.|+||||+.+-.....+ ..+++.++ .++|++++|+|++.+ +....+..++.+.+.|+++|
T Consensus 47 -------~~~~lvDlPG~ysl~~~s~e-----e~v~~~~l~~~~~D~ii~VvDa~~l---~r~l~l~~ql~e~g~P~vvv 111 (156)
T PF02421_consen 47 -------QQVELVDLPGIYSLSSKSEE-----ERVARDYLLSEKPDLIIVVVDATNL---ERNLYLTLQLLELGIPVVVV 111 (156)
T ss_dssp -------EEEEEEE----SSSSSSSHH-----HHHHHHHHHHTSSSEEEEEEEGGGH---HHHHHHHHHHHHTTSSEEEE
T ss_pred -------ceEEEEECCCcccCCCCCcH-----HHHHHHHHhhcCCCEEEEECCCCCH---HHHHHHHHHHHHcCCCEEEE
Confidence 38999999999874222111 23444443 799999999999862 45567888888999999999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+||+|......+......+ ++.++ ++++++||.+++|+++
T Consensus 112 lN~~D~a~~~g~~id~~~L----s~~Lg---~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 112 LNKMDEAERKGIEIDAEKL----SERLG---VPVIPVSARTGEGIDE 151 (156)
T ss_dssp EETHHHHHHTTEEE-HHHH----HHHHT---S-EEEEBTTTTBTHHH
T ss_pred EeCHHHHHHcCCEECHHHH----HHHhC---CCEEEEEeCCCcCHHH
Confidence 9999987543211111222 23333 3458999999999764
No 14
>PRK09866 hypothetical protein; Provisional
Probab=99.74 E-value=6.5e-17 Score=170.88 Aligned_cols=195 Identities=16% Similarity=0.179 Sum_probs=118.1
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcccc---CCceeeecC-----------------
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTI---PGNTIAVHA----------------- 259 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~---~g~~~~~~~----------------- 259 (547)
+.++++|++|+|||||+|+|+|..+ .++++.+.|+..+++.+++..+.. .++...++.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~V--lpt~~~~~t~lpT~i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl 147 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEV--LPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHL 147 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcc--ccCCCcccccccEEEEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHH
Confidence 7899999999999999999999998 899899999888877765521110 000000000
Q ss_pred ---CCCCCCcc----------ccccch---------------hhhhhhh--------------------------ccccc
Q 008954 260 ---DLPFSGLT----------TFGGAF---------------LSKFECS--------------------------QMSHP 285 (547)
Q Consensus 260 ---~~~~~~l~----------~~~~~~---------------~~~~~~~--------------------------~~~~~ 285 (547)
....+.+. .+...+ +.+.... ..+..
T Consensus 148 ~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~ 227 (741)
T PRK09866 148 TDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLES 227 (741)
T ss_pred HHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccccc
Confidence 00000000 000000 0000000 11223
Q ss_pred ccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCC--eEEEEeccCC
Q 008954 286 LLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDD--KIRVVLNKAD 363 (547)
Q Consensus 286 ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~--~iivVlNK~D 363 (547)
...++.|+||||+.......+.+ .....+.++|+||||+|+.. ..+..+..+++.+++.++ |+++|+||+|
T Consensus 228 ~~~QIIFVDTPGIhk~~~~~L~k------~M~eqL~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~~K~~PVILVVNKID 300 (741)
T PRK09866 228 YPGQLTLLDTPGPNEAGQPHLQK------MLNQQLARASAVLAVLDYTQ-LKSISDEEVREAILAVGQSVPLYVLVNKFD 300 (741)
T ss_pred ccCCEEEEECCCCCCccchHHHH------HHHHHHhhCCEEEEEEeCCC-CCChhHHHHHHHHHhcCCCCCEEEEEEccc
Confidence 34789999999998753222332 22335899999999999976 456667778888877664 9999999999
Q ss_pred CcChHH--HHHHHHHHHHhhh-hccCCCCcEEEEecccCCCCCCC
Q 008954 364 QVDTQQ--LMRVYGALMWSLG-KVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 364 ~~~~~~--l~~~~~~l~~~l~-~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
..+..+ ...+...+...+. ....++++ ++|||++|.+++.
T Consensus 301 l~dreeddkE~Lle~V~~~L~q~~i~f~eI--fPVSAlkG~nid~ 343 (741)
T PRK09866 301 QQDRNSDDADQVRALISGTLMKGCITPQQI--FPVSSMWGYLANR 343 (741)
T ss_pred CCCcccchHHHHHHHHHHHHHhcCCCCceE--EEEeCCCCCCHHH
Confidence 975211 2222222211122 22344555 7999999998876
No 15
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=1.9e-17 Score=171.86 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=109.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.-|+|||.||||||||||+|++.. ..+++.|.||+...+ ++..+++.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k---~~vs~~p~TT~~p~~-----------------------Giv~~~~~------- 206 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK---PKVADYPFTTLVPNL-----------------------GVVRVDDE------- 206 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc---ccccCCCCCccCcEE-----------------------EEEEeCCC-------
Confidence 349999999999999999999988 688999998875542 11111110
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCC---CCCCHHHHHHHHHHhCC-----
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHK---LDISDEFKRVIASLRGN----- 351 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~---~~~~~~~~~ll~~l~~~----- 351 (547)
..+.|+||||+..+...... +. ......++++|++++++|++. ....+....+++.+...
T Consensus 207 --------~~i~~vDtPGi~~~a~~~~~--Lg--~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~ 274 (390)
T PRK12298 207 --------RSFVVADIPGLIEGASEGAG--LG--IRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLA 274 (390)
T ss_pred --------cEEEEEeCCCccccccchhh--HH--HHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhc
Confidence 25899999999865321111 10 112234799999999999872 22334445555655542
Q ss_pred CCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCCC-----CCCCcchHhhHH
Q 008954 352 DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINGE-----VVGPIGQELFEK 418 (547)
Q Consensus 352 ~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~~-----~~~~~~~~~~~~ 418 (547)
+.|+++|+||+|+...+++......+. +..... ...+++||.++.++++. ..+++.+++|++
T Consensus 275 ~kP~IlVlNKiDl~~~~el~~~l~~l~----~~~~~~-~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~ 341 (390)
T PRK12298 275 EKPRWLVFNKIDLLDEEEAEERAKAIV----EALGWE-GPVYLISAASGLGVKELCWDLMTFIEENPREEAE 341 (390)
T ss_pred CCCEEEEEeCCccCChHHHHHHHHHHH----HHhCCC-CCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCc
Confidence 589999999999987665544443332 222221 12479999999998762 234444555553
No 16
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.71 E-value=3.8e-16 Score=145.94 Aligned_cols=159 Identities=18% Similarity=0.278 Sum_probs=103.5
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCC-CCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCN-YPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~-~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
..+.|+|+|.+|+|||||+|.|++.. . ..+++.+.+|....... . +
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~--~~~~~~~~~t~~~~~~~-------------------~------~------ 63 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKL--ARTSKTPGRTQLINFFE-------------------V------N------ 63 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCc--ccccCCCCcceEEEEEE-------------------e------C------
Confidence 56789999999999999999999976 3 44555554443221100 0 0
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHh---hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA---AKCDLILLLFDPHKLDISDEFKRVIASLRGNDD 353 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~---~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~ 353 (547)
..+.++||||+......... ...+......++ ..+|++++++|+.. +.+.....+++.+...+.
T Consensus 64 -----------~~~~liDtpG~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~~~ 130 (179)
T TIGR03598 64 -----------DGFRLVDLPGYGYAKVSKEE-KEKWQKLIEEYLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRERGI 130 (179)
T ss_pred -----------CcEEEEeCCCCccccCChhH-HHHHHHHHHHHHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHcCC
Confidence 26889999998643100000 001222233333 34689999999986 567777777777777789
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~ 404 (547)
|+++|+||+|+....+.......+...+.... .....+++||++|+|++
T Consensus 131 pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~--~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 131 PVLIVLTKADKLKKSELNKQLKKIKKALKKDA--DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CEEEEEECcccCCHHHHHHHHHHHHHHHhhcc--CCCceEEEECCCCCCCC
Confidence 99999999999876655555555443343321 12234899999999874
No 17
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=2.6e-16 Score=167.81 Aligned_cols=161 Identities=18% Similarity=0.235 Sum_probs=113.5
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|.+|+|||||+|+|+|.+. ..+++.|+|++..+... ..+.+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~--~~~~~~~gtt~~~~~~~-----------------~~~~~------------ 220 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEER--VIVSDIAGTTRDSIDTP-----------------FERDG------------ 220 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCceEEEEEEE-----------------EEECC------------
Confidence 457899999999999999999999987 78888888887654210 00111
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHH--HHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTG--VISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKI 355 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~--~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~i 355 (547)
..+.++||||+.... .+....++.. .+...+..+|++|+|+|+.. +.+.++..++..+...+.|+
T Consensus 221 ----------~~~~lvDT~G~~~~~--~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~~~~~ 287 (435)
T PRK00093 221 ----------QKYTLIDTAGIRRKG--KVTEGVEKYSVIRTLKAIERADVVLLVIDATE-GITEQDLRIAGLALEAGRAL 287 (435)
T ss_pred ----------eeEEEEECCCCCCCc--chhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCcE
Confidence 368999999997532 1111111111 23345789999999999987 67888888888887788999
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+.+.++.......+...+.. ...++.+++||+++.++.+
T Consensus 288 ivv~NK~Dl~~~~~~~~~~~~~~~~l~~---~~~~~i~~~SA~~~~gv~~ 334 (435)
T PRK00093 288 VIVVNKWDLVDEKTMEEFKKELRRRLPF---LDYAPIVFISALTGQGVDK 334 (435)
T ss_pred EEEEECccCCCHHHHHHHHHHHHHhccc---ccCCCEEEEeCCCCCCHHH
Confidence 9999999998655444433333222221 1234568999999999875
No 18
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.69 E-value=4e-16 Score=149.41 Aligned_cols=189 Identities=21% Similarity=0.230 Sum_probs=112.2
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCC--------cccc----eeEEEEeCCCccccCCceeee-cCCCCCCCcc
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPE--------PTTD----RFVVVMSGPDERTIPGNTIAV-HADLPFSGLT 267 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~--------~~T~----~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~ 267 (547)
+|+|+|++|+|||||+|+|++..- ++++.. +.++ ....+++.......+|+++.. ...+.+.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~-- 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSK--SIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK-- 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--
Confidence 389999999999999999998764 433211 1111 222333444344456666522 11111111
Q ss_pred ccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHH
Q 008954 268 TFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIAS 347 (547)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~ 347 (547)
.++.|+||||+.. |...+...+..+|++|+|+|+.. +...+....+..
T Consensus 77 --------------------~~~~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~-~~~~~~~~~~~~ 124 (208)
T cd04166 77 --------------------RKFIIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARK-GVLEQTRRHSYI 124 (208)
T ss_pred --------------------ceEEEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCC-CccHhHHHHHHH
Confidence 3789999999742 11123334689999999999987 445555555554
Q ss_pred HhCCCC-eEEEEeccCCCcCh--HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCCCCCCCcchHhhHHHHHHHH
Q 008954 348 LRGNDD-KIRVVLNKADQVDT--QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINGEVVGPIGQELFEKEQDDLL 424 (547)
Q Consensus 348 l~~~~~-~iivVlNK~D~~~~--~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~~~~~~~~~~~~~~~~e~l~ 424 (547)
+...+. ++++|+||+|+... +........+ ..+.+.++.+.+..+++||++|.++.+.+ +...|++. ..|+
T Consensus 125 ~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~ii~iSA~~g~ni~~~~--~~~~w~~g---~~~~ 198 (208)
T cd04166 125 LSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADY-LAFAAKLGIEDITFIPISALDGDNVVSRS--ENMPWYSG---PTLL 198 (208)
T ss_pred HHHcCCCcEEEEEEchhcccCCHHHHHHHHHHH-HHHHHHcCCCCceEEEEeCCCCCCCccCC--CCCCCCCC---CcHH
Confidence 544453 57889999999742 2122222222 11122234444456899999999998743 56677765 4455
Q ss_pred HHHhhch
Q 008954 425 MDLIDIP 431 (547)
Q Consensus 425 ~~l~~~~ 431 (547)
+.+..++
T Consensus 199 ~~~~~~~ 205 (208)
T cd04166 199 EHLETVP 205 (208)
T ss_pred HHHhcCC
Confidence 5554443
No 19
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.69 E-value=4.1e-17 Score=167.48 Aligned_cols=150 Identities=21% Similarity=0.302 Sum_probs=97.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCC-CCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPF-SGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~-~~l~~~~~~~~~~ 276 (547)
..+.|+++|.+|||||||+|+|+|.+ ..+++.+.||....... ..+ .+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~---~~v~~~~~tT~d~~~~~-----------------i~~~~~----------- 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD---VYAADQLFATLDPTTRR-----------------LDLPDG----------- 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc---eeeccCCccccCCEEEE-----------------EEeCCC-----------
Confidence 34889999999999999999999988 56666666654332100 000 01
Q ss_pred hhhhcccccccccceEEcCCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH---HHHHHHHhCCC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF---KRVIASLRGND 352 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~---~~ll~~l~~~~ 352 (547)
..+.|+||||+... ....++. | ..+...+.+||++|+|+|++++...+.. .++++.+...+
T Consensus 237 -----------~~i~l~DT~G~~~~l~~~lie~---f-~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~ 301 (351)
T TIGR03156 237 -----------GEVLLTDTVGFIRDLPHELVAA---F-RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAED 301 (351)
T ss_pred -----------ceEEEEecCcccccCCHHHHHH---H-HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCC
Confidence 27899999999532 1122221 2 1244457899999999999875433332 24455554447
Q ss_pred CeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.|+++|+||+|+.+..++.. . .. ..+ ..+++||++|.|+++
T Consensus 302 ~piIlV~NK~Dl~~~~~v~~----~----~~--~~~--~~i~iSAktg~GI~e 342 (351)
T TIGR03156 302 IPQLLVYNKIDLLDEPRIER----L----EE--GYP--EAVFVSAKTGEGLDL 342 (351)
T ss_pred CCEEEEEEeecCCChHhHHH----H----Hh--CCC--CEEEEEccCCCCHHH
Confidence 89999999999986543321 1 01 112 247999999999864
No 20
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=3e-16 Score=168.28 Aligned_cols=160 Identities=20% Similarity=0.252 Sum_probs=107.5
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+|||||+|+|+|..+ ..+++.|+||+..+.. ...+.+
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~--~~~s~~~gtT~d~~~~-----------------~~~~~~------------- 258 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEER--SVVDDVAGTTVDPVDS-----------------LIELGG------------- 258 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCccCCcceE-----------------EEEECC-------------
Confidence 47899999999999999999999986 6788888887644310 000111
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHH--HHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGV--ISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~--~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
..+.|+||||+....+. ....++... +...+.++|++++|+|+++ +.+.++..++..+...+.|++
T Consensus 259 ---------~~~~l~DTaG~~~~~~~--~~~~e~~~~~~~~~~i~~ad~vilV~Da~~-~~s~~~~~~~~~~~~~~~piI 326 (472)
T PRK03003 259 ---------KTWRFVDTAGLRRRVKQ--ASGHEYYASLRTHAAIEAAEVAVVLIDASE-PISEQDQRVLSMVIEAGRALV 326 (472)
T ss_pred ---------EEEEEEECCCccccccc--cchHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEE
Confidence 36789999998642111 101111111 2345789999999999987 567777788888777889999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+...+........+...+.. . ...+.+++||++|.++++
T Consensus 327 iV~NK~Dl~~~~~~~~~~~~i~~~l~~-~--~~~~~~~~SAk~g~gv~~ 372 (472)
T PRK03003 327 LAFNKWDLVDEDRRYYLEREIDRELAQ-V--PWAPRVNISAKTGRAVDK 372 (472)
T ss_pred EEEECcccCChhHHHHHHHHHHHhccc-C--CCCCEEEEECCCCCCHHH
Confidence 999999998643322222222111221 1 223447999999999875
No 21
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=7.5e-16 Score=141.43 Aligned_cols=156 Identities=21% Similarity=0.286 Sum_probs=108.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCC-CCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCN-YPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~-~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
.++-|+++|++|+|||||||+|+|+. . +.+|..|+.|+..-... .+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~L--ArtSktPGrTq~iNff~-------------------------~~------ 69 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNL--ARTSKTPGRTQLINFFE-------------------------VD------ 69 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcce--eecCCCCCccceeEEEE-------------------------ec------
Confidence 67889999999999999999999965 5 88999988886443111 00
Q ss_pred hhhhcccccccccceEEcCCCCCChh-----hhhhhcccChHHHHHHH-hhc--CCeEEEEecCCCCCCCHHHHHHHHHH
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGE-----KQRTQRTYDFTGVISWF-AAK--CDLILLLFDPHKLDISDEFKRVIASL 348 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~-----~~~~~~~~~~~~~~~~~-~~~--aD~illv~d~~~~~~~~~~~~ll~~l 348 (547)
..+.|||.||+.-.. +.... .....+ -.+ -..+++++|+.. ...+.+.++++.+
T Consensus 70 -----------~~~~lVDlPGYGyAkv~k~~~e~w~------~~i~~YL~~R~~L~~vvlliD~r~-~~~~~D~em~~~l 131 (200)
T COG0218 70 -----------DELRLVDLPGYGYAKVPKEVKEKWK------KLIEEYLEKRANLKGVVLLIDARH-PPKDLDREMIEFL 131 (200)
T ss_pred -----------CcEEEEeCCCcccccCCHHHHHHHH------HHHHHHHhhchhheEEEEEEECCC-CCcHHHHHHHHHH
Confidence 258899999997641 11111 122222 233 445666699987 6778889999999
Q ss_pred hCCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 349 RGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 349 ~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
...+.|+++|+||+|.++..+..+....+...+...... ....+..|+..+.|+++
T Consensus 132 ~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~-~~~~~~~ss~~k~Gi~~ 187 (200)
T COG0218 132 LELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD-DQWVVLFSSLKKKGIDE 187 (200)
T ss_pred HHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc-cceEEEEecccccCHHH
Confidence 999999999999999998766655444443333322222 21247888888888664
No 22
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.67 E-value=1.8e-16 Score=146.39 Aligned_cols=152 Identities=26% Similarity=0.363 Sum_probs=97.5
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCcee--eecCCCCCCCccccccchhhhh--
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTI--AVHADLPFSGLTTFGGAFLSKF-- 277 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~--~~~~~~~~~~l~~~~~~~~~~~-- 277 (547)
|+|+|+.|+|||||||+|+|..+ .+++..|+|.+++.+.+++.......... ..+....+..+......+....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~i--lp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPI--LPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDS 78 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS---SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhccc--CcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccc
Confidence 78999999999999999999998 99999999999999988765432211111 0111111111111111111100
Q ss_pred ------------hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHH
Q 008954 278 ------------ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVI 345 (547)
Q Consensus 278 ------------~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll 345 (547)
.......+....+.|+||||+.+..... ..++..++..+|++|+|+++.......+...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~-------~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~ 151 (168)
T PF00350_consen 79 IEGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH-------TEITEEYLPKADVVIFVVDANQDLTESDMEFLK 151 (168)
T ss_dssp HHTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT-------SHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHH
T ss_pred ccccccccccceeEEeeccccccceEEEeCCccccchhhh-------HHHHHHhhccCCEEEEEeccCcccchHHHHHHH
Confidence 1112234455779999999998753221 147788889999999999998743344445555
Q ss_pred HHHhCCCCeEEEEeccC
Q 008954 346 ASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 346 ~~l~~~~~~iivVlNK~ 362 (547)
+.+......+++|+||+
T Consensus 152 ~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 152 QMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHTTTCSSEEEEEE-G
T ss_pred HHhcCCCCeEEEEEcCC
Confidence 56666677799999995
No 23
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.67 E-value=8.6e-16 Score=163.60 Aligned_cols=160 Identities=18% Similarity=0.246 Sum_probs=109.9
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+|||||+|+|+|.+. ..+++.|+|++..+... ..+.+
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~--~~~~~~~gtt~~~~~~~-----------------~~~~~------------- 219 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEER--VIVSDIAGTTRDSIDIP-----------------FERNG------------- 219 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCe--eecCCCCCceECcEeEE-----------------EEECC-------------
Confidence 36799999999999999999999886 77788887776443100 00111
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHH--HHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTG--VISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~--~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
..+.++||||+.... .+....++.. .+...+..+|++|+|+|+.+ +.+.++..++..+...+.|++
T Consensus 220 ---------~~~~liDT~G~~~~~--~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~~~~ii 287 (429)
T TIGR03594 220 ---------KKYLLIDTAGIRRKG--KVTEGVEKYSVLRTLKAIERADVVLLVLDATE-GITEQDLRIAGLILEAGKALV 287 (429)
T ss_pred ---------cEEEEEECCCccccc--cchhhHHHHHHHHHHHHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHcCCcEE
Confidence 268899999997532 1111111111 23345799999999999987 677888888888877889999
Q ss_pred EEeccCCCc-ChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQV-DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~-~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|++ +..........+...+.. . ...+.+++||++|.++.+
T Consensus 288 iv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~--~~~~vi~~SA~~g~~v~~ 334 (429)
T TIGR03594 288 IVVNKWDLVKDEKTREEFKKELRRKLPF-L--DFAPIVFISALTGQGVDK 334 (429)
T ss_pred EEEECcccCCCHHHHHHHHHHHHHhccc-C--CCCceEEEeCCCCCCHHH
Confidence 999999998 443343433333212211 1 234558999999999874
No 24
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.65 E-value=1.6e-15 Score=143.18 Aligned_cols=167 Identities=22% Similarity=0.180 Sum_probs=105.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+++|+.++|||||+++|++.. ...+..... . ...+........+|++... ...+.+.+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~---~~~g~~~~~-~-~~~~d~~~~E~~rg~Ti~~~~~~~~~~~------------- 64 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVL---AKKGGAKFK-K-YDEIDKAPEEKARGITINTAHVEYETAN------------- 64 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH---Hhccccccc-c-cccccCChhhhhcCccEEeeeeEecCCC-------------
Confidence 469999999999999999999763 111111100 0 0111222223345555521 11111111
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IRV 357 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-iiv 357 (547)
.++.|+||||+.. |...+...+..+|++++|+|+.. +...++.+++..+...+.| +++
T Consensus 65 ---------~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~~~iIv 123 (195)
T cd01884 65 ---------RHYAHVDCPGHAD-----------YIKNMITGAAQMDGAILVVSATD-GPMPQTREHLLLARQVGVPYIVV 123 (195)
T ss_pred ---------eEEEEEECcCHHH-----------HHHHHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCcEEE
Confidence 3789999999852 23345556789999999999987 6777888888888888887 789
Q ss_pred EeccCCCcChHHHHH-HHHHHHHhhhhcc-CCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMR-VYGALMWSLGKVL-NTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~-~~~~l~~~l~~~~-~~~~v~~v~isa~~~~~l~~ 405 (547)
|+||+|++..++..+ ....+...+.++. ....++.+++||++|.+..+
T Consensus 124 viNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 124 FLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC
Confidence 999999985444332 3333433334321 22357789999999998653
No 25
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.65 E-value=5.3e-16 Score=134.17 Aligned_cols=116 Identities=29% Similarity=0.460 Sum_probs=83.8
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
.|+|+|++|+|||||+|+|+|... +.++..+.+|+...... ....+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~--~~~~~~~~~T~~~~~~~-----------------------~~~~~--------- 46 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL--AKVSNIPGTTRDPVYGQ-----------------------FEYNN--------- 46 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS--SEESSSTTSSSSEEEEE-----------------------EEETT---------
T ss_pred CEEEECCCCCCHHHHHHHHhcccc--ccccccccceeeeeeee-----------------------eeece---------
Confidence 489999999999999999999875 78888887777653210 00011
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEec
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLN 360 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlN 360 (547)
..+.|+||||+.++........ .+....++ +..+|++++++|+.+ ...+.+.++++.++ .+.|+++|+|
T Consensus 47 -------~~~~~vDtpG~~~~~~~~~~~~-~~~~~~~~-~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~-~~~~~i~v~N 115 (116)
T PF01926_consen 47 -------KKFILVDTPGINDGESQDNDGK-EIRKFLEQ-ISKSDLIIYVVDASN-PITEDDKNILRELK-NKKPIILVLN 115 (116)
T ss_dssp -------EEEEEEESSSCSSSSHHHHHHH-HHHHHHHH-HCTESEEEEEEETTS-HSHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred -------eeEEEEeCCCCcccchhhHHHH-HHHHHHHH-HHHCCEEEEEEECCC-CCCHHHHHHHHHHh-cCCCEEEEEc
Confidence 3678999999987632221100 11123333 499999999999876 55667788888887 7899999999
Q ss_pred c
Q 008954 361 K 361 (547)
Q Consensus 361 K 361 (547)
|
T Consensus 116 K 116 (116)
T PF01926_consen 116 K 116 (116)
T ss_dssp S
T ss_pred C
Confidence 8
No 26
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.64 E-value=2.1e-15 Score=169.35 Aligned_cols=160 Identities=20% Similarity=0.228 Sum_probs=107.7
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
.+.|+++|.+|+|||||+|+|+|.++ ..+++.|+||+..+. ....+.+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~--~~v~~~~gtT~d~~~-----------------~~~~~~~------------- 497 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEER--AVVNDLAGTTRDPVD-----------------EIVEIDG------------- 497 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccc--cccCCCCCCCcCcce-----------------eEEEECC-------------
Confidence 47899999999999999999999987 678888888765431 0000111
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHH--HHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTG--VISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~--~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
..+.|+||||+...... ..+.++.. .+...+..+|++++|+|+++ +.+.++..++..+...+.|++
T Consensus 498 ---------~~~~liDTaG~~~~~~~--~~~~e~~~~~r~~~~i~~advvilViDat~-~~s~~~~~i~~~~~~~~~piI 565 (712)
T PRK09518 498 ---------EDWLFIDTAGIKRRQHK--LTGAEYYSSLRTQAAIERSELALFLFDASQ-PISEQDLKVMSMAVDAGRALV 565 (712)
T ss_pred ---------CEEEEEECCCcccCccc--chhHHHHHHHHHHHHhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEE
Confidence 36789999998643111 11111111 13445789999999999987 677777788887777789999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+++..........+...+. .. ...+.+++||++|.|+.+
T Consensus 566 iV~NK~DL~~~~~~~~~~~~~~~~l~-~~--~~~~ii~iSAktg~gv~~ 611 (712)
T PRK09518 566 LVFNKWDLMDEFRRQRLERLWKTEFD-RV--TWARRVNLSAKTGWHTNR 611 (712)
T ss_pred EEEEchhcCChhHHHHHHHHHHHhcc-CC--CCCCEEEEECCCCCCHHH
Confidence 99999999865332222222211111 12 223447899999999875
No 27
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.64 E-value=2.3e-15 Score=137.56 Aligned_cols=156 Identities=24% Similarity=0.368 Sum_probs=103.2
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|++|+|||||+|+|+|..+ +.+++.+.+++.... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~--~~~~~~~~~~~~~~~-----------------------~~~~~~~------- 50 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIR-----------------------GIYTDDD------- 50 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCce--EeccCCCCceeceEE-----------------------EEEEcCC-------
Confidence 35799999999999999999999886 555555555433221 0000000
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
..+.++||||+.......... +.......+..+|++++++|+.++ .......++..+...+.|+++|
T Consensus 51 ---------~~~~liDtpG~~~~~~~~~~~---~~~~~~~~~~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~~~~~iiv 117 (168)
T cd04163 51 ---------AQIIFVDTPGIHKPKKKLGER---MVKAAWSALKDVDLVLFVVDASEP-IGEGDEFILELLKKSKTPVILV 117 (168)
T ss_pred ---------eEEEEEECCCCCcchHHHHHH---HHHHHHHHHHhCCEEEEEEECCCc-cCchHHHHHHHHHHhCCCEEEE
Confidence 268899999998653221111 223445568999999999999874 3455566667777667899999
Q ss_pred eccCCCc-ChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQV-DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~-~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+||+|+. ..+++......+ ....+.. ..+.+|++.+.++++
T Consensus 118 ~nK~Dl~~~~~~~~~~~~~~----~~~~~~~--~~~~~s~~~~~~~~~ 159 (168)
T cd04163 118 LNKIDLVKDKEDLLPLLEKL----KELGPFA--EIFPISALKGENVDE 159 (168)
T ss_pred EEchhccccHHHHHHHHHHH----HhccCCC--ceEEEEeccCCChHH
Confidence 9999998 444444444333 2222222 337899999988764
No 28
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.63 E-value=2.4e-15 Score=138.85 Aligned_cols=154 Identities=19% Similarity=0.274 Sum_probs=92.8
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
.|+++|.+|||||||+|+|.|.. ..++..|.++....+ +....++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~---~~v~~~~~~t~~~~~-----------------------~~~~~~~--------- 46 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK---PKIADYPFTTLVPNL-----------------------GVVRVDD--------- 46 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC---ccccCCCccccCCcc-----------------------eEEEcCC---------
Confidence 38999999999999999999877 455555544421110 0000000
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCC-CCCHHHHHHHHHHhC-----CCCe
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKL-DISDEFKRVIASLRG-----NDDK 354 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~-~~~~~~~~ll~~l~~-----~~~~ 354 (547)
...+.|+||||+....... +. +.....+.+..+|++++++|+++. ...+....+++.+.. .+.|
T Consensus 47 ------~~~~~l~DtpG~~~~~~~~--~~--~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 116 (170)
T cd01898 47 ------GRSFVVADIPGLIEGASEG--KG--LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP 116 (170)
T ss_pred ------CCeEEEEecCcccCccccc--CC--chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc
Confidence 0278999999986432110 01 111222335689999999999874 233344444444432 2688
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+.+..........+. .+. .....+.+||+.+.++.+
T Consensus 117 ~ivv~NK~Dl~~~~~~~~~~~~~~---~~~---~~~~~~~~Sa~~~~gi~~ 161 (170)
T cd01898 117 RIVVLNKIDLLDEEELFELLKELL---KEL---WGKPVFPISALTGEGLDE 161 (170)
T ss_pred cEEEEEchhcCCchhhHHHHHHHH---hhC---CCCCEEEEecCCCCCHHH
Confidence 999999999986654433332221 111 122347899999988764
No 29
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.62 E-value=4.3e-16 Score=146.83 Aligned_cols=104 Identities=24% Similarity=0.297 Sum_probs=77.5
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
..++|+||||..+ |...+...+..+|++|+|+|+.+ +......+++..+...+.|+++|+||+|+. .
T Consensus 70 ~~i~~iDtPG~~~-----------f~~~~~~~~~~~D~ailvVda~~-g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~ 136 (188)
T PF00009_consen 70 RKITLIDTPGHED-----------FIKEMIRGLRQADIAILVVDAND-GIQPQTEEHLKILRELGIPIIVVLNKMDLI-E 136 (188)
T ss_dssp EEEEEEEESSSHH-----------HHHHHHHHHTTSSEEEEEEETTT-BSTHHHHHHHHHHHHTT-SEEEEEETCTSS-H
T ss_pred cceeecccccccc-----------eeecccceecccccceeeeeccc-ccccccccccccccccccceEEeeeeccch-h
Confidence 4799999999853 22344555899999999999987 678888999999998999999999999999 4
Q ss_pred HHHHHHHHHHHHhhhhccCCC---CcEEEEecccCCCCCC
Q 008954 368 QQLMRVYGALMWSLGKVLNTP---EVVRVYIGSFNDKPIN 404 (547)
Q Consensus 368 ~~l~~~~~~l~~~l~~~~~~~---~v~~v~isa~~~~~l~ 404 (547)
.++.+...++...+-+..... .++.+++||.+|.|+.
T Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~ 176 (188)
T PF00009_consen 137 KELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGID 176 (188)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHH
T ss_pred hhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHH
Confidence 445555554443332222322 4677999999999876
No 30
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.62 E-value=5.2e-15 Score=136.39 Aligned_cols=159 Identities=17% Similarity=0.266 Sum_probs=101.1
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||+|+|++... ..+++.++|++.... ......+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~-----------------~~~~~~~-------------- 49 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEER--VIVSDIAGTTRDSID-----------------VPFEYDG-------------- 49 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccc--eeccCCCCCccCcee-----------------eEEEECC--------------
Confidence 5799999999999999999999875 555555555443220 0000011
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHH--HHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTG--VISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~--~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
..+.++||||+..... .....+... .+...+..+|++++++|+.+ ..+.+...++..+...+.|+++
T Consensus 50 --------~~~~iiDtpG~~~~~~--~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~~ii 118 (174)
T cd01895 50 --------KKYTLIDTAGIRRKGK--VEEGIEKYSVLRTLKAIERADVVLLVIDATE-GITEQDLRIAGLILEEGKALVI 118 (174)
T ss_pred --------eeEEEEECCCCccccc--hhccHHHHHHHHHHHHHhhcCeEEEEEeCCC-CcchhHHHHHHHHHhcCCCEEE
Confidence 2688999999875310 111111101 12334679999999999987 4455556667766666899999
Q ss_pred EeccCCCcCh--HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDT--QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~--~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+||+|+... .+.......+...+.. ......+++||+.+.++.+
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 119 VVNKWDLVEKDSKTMKEFKKEIRRKLPF---LDYAPIVFISALTGQGVDK 165 (174)
T ss_pred EEeccccCCccHHHHHHHHHHHHhhccc---ccCCceEEEeccCCCCHHH
Confidence 9999999865 3443333333222211 1223458999999988764
No 31
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=5.3e-15 Score=144.28 Aligned_cols=131 Identities=24% Similarity=0.394 Sum_probs=99.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..+.|.|.|.||+|||||+++|.+.+ ..+.+.|.||+-..+.|-.. .+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Ak---pEvA~YPFTTK~i~vGhfe~-----------------~~------------ 214 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAK---PEVAPYPFTTKGIHVGHFER-----------------GY------------ 214 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCC---CccCCCCccccceeEeeeec-----------------CC------------
Confidence 56899999999999999999999999 78999999998877655331 12
Q ss_pred hhhcccccccccceEEcCCCCCCh---hhhhhhcccChHHHHHHHhhcCCeEEEEecCCC-CCCC-HHHHHHHHHHhCC-
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSG---EKQRTQRTYDFTGVISWFAAKCDLILLLFDPHK-LDIS-DEFKRVIASLRGN- 351 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~---~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~-~~~~-~~~~~ll~~l~~~- 351 (547)
..+.+|||||+++. +.+.++ .+.+.++..-.++|||++|++. -+.+ ++...+++.++..
T Consensus 215 ----------~R~QvIDTPGlLDRPl~ErN~IE-----~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f 279 (346)
T COG1084 215 ----------LRIQVIDTPGLLDRPLEERNEIE-----RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF 279 (346)
T ss_pred ----------ceEEEecCCcccCCChHHhcHHH-----HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc
Confidence 37999999999985 333344 1244555678899999999875 2333 3445677777754
Q ss_pred CCeEEEEeccCCCcChHHHHHHHH
Q 008954 352 DDKIRVVLNKADQVDTQQLMRVYG 375 (547)
Q Consensus 352 ~~~iivVlNK~D~~~~~~l~~~~~ 375 (547)
..|+++|+||+|..+.+.+.+...
T Consensus 280 ~~p~v~V~nK~D~~~~e~~~~~~~ 303 (346)
T COG1084 280 KAPIVVVINKIDIADEEKLEEIEA 303 (346)
T ss_pred CCCeEEEEecccccchhHHHHHHH
Confidence 578999999999997766655443
No 32
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.62 E-value=4.1e-15 Score=139.46 Aligned_cols=166 Identities=22% Similarity=0.212 Sum_probs=99.0
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeec-CCCCCCCccccccchhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVH-ADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.|+++|.+|+|||||+|+|++... ........++.+. .........+.+.... ....+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------- 60 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTG--DIERDGTVEETFL---DVLKEERERGITIKSGVATFEWP--------------- 60 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcC--CCCcCCceecccc---cCCHHHHHcCCCeecceEEEeeC---------------
Confidence 389999999999999999999874 2221111111110 0000011112111100 000000
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
...+.|+||||..+- .......+..+|++++++|+.. .......+.+..+...+.|+++|+
T Consensus 61 -------~~~~~liDtpG~~~~-----------~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~i~iv~ 121 (189)
T cd00881 61 -------DRRVNFIDTPGHEDF-----------SSEVIRGLSVSDGAILVVDANE-GVQPQTREHLRIAREGGLPIIVAI 121 (189)
T ss_pred -------CEEEEEEeCCCcHHH-----------HHHHHHHHHhcCEEEEEEECCC-CCcHHHHHHHHHHHHCCCCeEEEE
Confidence 137899999998632 1234455679999999999987 445566677777776789999999
Q ss_pred ccCCCcChHHHHHHHHHHHHhhhhcc----------CCCCcEEEEecccCCCCCCC
Q 008954 360 NKADQVDTQQLMRVYGALMWSLGKVL----------NTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 360 NK~D~~~~~~l~~~~~~l~~~l~~~~----------~~~~v~~v~isa~~~~~l~~ 405 (547)
||+|+..++++......+...+.... .......+++||+.|.|+++
T Consensus 122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~ 177 (189)
T cd00881 122 NKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEE 177 (189)
T ss_pred ECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHH
Confidence 99999875444433333322222211 11234568899999998764
No 33
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.61 E-value=4.1e-15 Score=136.15 Aligned_cols=152 Identities=23% Similarity=0.213 Sum_probs=88.7
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCC--CCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIG--PEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~--~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
.|+++|++|+|||||+|+|+|... .... ..++++..... ....+.. +
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~t~~~~~-----------------~~~~~~~-----~------- 50 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIET--DRLPEEKKRGITIDLGF-----------------AYLDLPS-----G------- 50 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCccc--ccchhhhccCceEEeee-----------------EEEEecC-----C-------
Confidence 589999999999999999998642 1111 11222211100 0000000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCC-eEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDD-KIRV 357 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~-~iiv 357 (547)
..+.++||||... +.......+..+|++++|+|+.+ +...+..+.+..+...+. |+++
T Consensus 51 ---------~~~~~~DtpG~~~-----------~~~~~~~~~~~ad~ii~V~d~~~-~~~~~~~~~~~~~~~~~~~~~il 109 (164)
T cd04171 51 ---------KRLGFIDVPGHEK-----------FIKNMLAGAGGIDLVLLVVAADE-GIMPQTREHLEILELLGIKRGLV 109 (164)
T ss_pred ---------cEEEEEECCChHH-----------HHHHHHhhhhcCCEEEEEEECCC-CccHhHHHHHHHHHHhCCCcEEE
Confidence 3789999999742 11233445689999999999976 333444444444433344 8999
Q ss_pred EeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+||+|+............+...+... .......+++||+.+.++++
T Consensus 110 v~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 110 VLTKADLVDEDWLELVEEEIRELLAGT-FLADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred EEECccccCHHHHHHHHHHHHHHHHhc-CcCCCcEEEEeCCCCcCHHH
Confidence 999999986533322222222112211 11233458999999998764
No 34
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=3.5e-15 Score=152.00 Aligned_cols=155 Identities=22% Similarity=0.287 Sum_probs=97.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+|||.||||||||||+|++.. ..+++.|.||....+ +...+.+.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~---~~va~ypfTT~~p~~-----------------------G~v~~~~~------- 205 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK---PKIADYPFTTLHPNL-----------------------GVVRVDDY------- 205 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC---CccCCCCCceeCceE-----------------------EEEEeCCC-------
Confidence 459999999999999999999987 567888877654332 11111000
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC-----CCCe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG-----NDDK 354 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~-----~~~~ 354 (547)
..+.++||||+..+..+. +++ .......++++|++++|+|+++....+....+...+.. .++|
T Consensus 206 --------~~~~i~D~PGli~ga~~~--~gL--g~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp 273 (335)
T PRK12299 206 --------KSFVIADIPGLIEGASEG--AGL--GHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKP 273 (335)
T ss_pred --------cEEEEEeCCCccCCCCcc--ccH--HHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCC
Confidence 368999999998643221 111 11122236789999999999864433344444455543 2679
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+....+........ .. +.. ....+++||+++.++++
T Consensus 274 ~IIV~NKiDL~~~~~~~~~~~~~--~~-~~~---~~~i~~iSAktg~GI~e 318 (335)
T PRK12299 274 RILVLNKIDLLDEEEEREKRAAL--EL-AAL---GGPVFLISAVTGEGLDE 318 (335)
T ss_pred eEEEEECcccCCchhHHHHHHHH--HH-Hhc---CCCEEEEEcCCCCCHHH
Confidence 99999999997654332211111 01 111 12347999999999875
No 35
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.61 E-value=4.7e-15 Score=159.10 Aligned_cols=152 Identities=21% Similarity=0.284 Sum_probs=105.1
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
.++|+|+|.+|||||||+|.|+|... +.+++.|++|+..+... ..+.+
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~--~~v~~~~gvT~d~~~~~-----------------~~~~~------------- 85 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRRE--AVVEDVPGVTRDRVSYD-----------------AEWNG------------- 85 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCc--ccccCCCCCCEeeEEEE-----------------EEECC-------------
Confidence 47899999999999999999999876 77788888776544211 00111
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
..+.++||||+.... ..+.. .+...+...+..||++|+|+|+.+ +.+..+..++..+...+.|+++|
T Consensus 86 ---------~~~~l~DT~G~~~~~-~~~~~--~~~~~~~~~~~~aD~il~VvD~~~-~~s~~~~~i~~~l~~~~~piilV 152 (472)
T PRK03003 86 ---------RRFTVVDTGGWEPDA-KGLQA--SVAEQAEVAMRTADAVLFVVDATV-GATATDEAVARVLRRSGKPVILA 152 (472)
T ss_pred ---------cEEEEEeCCCcCCcc-hhHHH--HHHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEE
Confidence 268899999986321 11111 122345566899999999999987 55666677778887788999999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+||+|+....... ...+.+ +...+ +++||.+|.|+.+
T Consensus 153 ~NK~Dl~~~~~~~----~~~~~~----g~~~~--~~iSA~~g~gi~e 189 (472)
T PRK03003 153 ANKVDDERGEADA----AALWSL----GLGEP--HPVSALHGRGVGD 189 (472)
T ss_pred EECccCCccchhh----HHHHhc----CCCCe--EEEEcCCCCCcHH
Confidence 9999986432111 111211 22233 6899999999886
No 36
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.60 E-value=3.2e-15 Score=135.71 Aligned_cols=148 Identities=18% Similarity=0.303 Sum_probs=95.7
Q ss_pred EEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhcc
Q 008954 203 MLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQM 282 (547)
Q Consensus 203 ~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (547)
+++|.+|+|||||+|.|++... ..++..+.+++...... ..+.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~--~~~~~~~~~t~~~~~~~-----------------~~~~~----------------- 44 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD--AIVEDTPGVTRDRIYGE-----------------AEWGG----------------- 44 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE--EeecCCCCceeCceeEE-----------------EEECC-----------------
Confidence 5799999999999999999864 44555555543222100 00011
Q ss_pred cccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 283 SHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 283 ~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
..+.++||||+.+... .... .+.......+..+|++++++|+.+ ..+.....+++.++..+.|+++|+||+
T Consensus 45 -----~~~~i~DtpG~~~~~~-~~~~--~~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~piiiv~nK~ 115 (157)
T cd01894 45 -----REFILIDTGGIEPDDE-GISK--EIREQAELAIEEADVILFVVDGRE-GLTPADEEIAKYLRKSKKPVILVVNKV 115 (157)
T ss_pred -----eEEEEEECCCCCCchh-HHHH--HHHHHHHHHHHhCCEEEEEEeccc-cCCccHHHHHHHHHhcCCCEEEEEECc
Confidence 2689999999986432 1111 011234455789999999999976 344445566777777789999999999
Q ss_pred CCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 363 DQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 363 D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+........ ..+. .+... .+++|++++.++++
T Consensus 116 D~~~~~~~~~----~~~~----~~~~~--~~~~Sa~~~~gv~~ 148 (157)
T cd01894 116 DNIKEEDEAA----EFYS----LGFGE--PIPISAEHGRGIGD 148 (157)
T ss_pred ccCChHHHHH----HHHh----cCCCC--eEEEecccCCCHHH
Confidence 9987644311 1111 22223 37999999988764
No 37
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.60 E-value=3.9e-15 Score=158.53 Aligned_cols=150 Identities=19% Similarity=0.281 Sum_probs=105.8
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|.|+|... +.+++.|++++...... ..+.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~t~d~~~~~-----------------~~~~~--------------- 46 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD--AIVSDTPGVTRDRKYGD-----------------AEWGG--------------- 46 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc--ceecCCCCcccCceEEE-----------------EEECC---------------
Confidence 489999999999999999999886 77888887776443110 00111
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEec
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLN 360 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlN 360 (547)
..+.++||||+.... ..+... +...+...+..+|++++|+|+.. +.+..+.++.+.+++.+.|+++|+|
T Consensus 47 -------~~~~liDTpG~~~~~-~~~~~~--~~~~~~~~~~~ad~vl~vvD~~~-~~~~~d~~i~~~l~~~~~piilVvN 115 (429)
T TIGR03594 47 -------REFILIDTGGIEEDD-DGLDKQ--IREQAEIAIEEADVILFVVDGRE-GLTPEDEEIAKWLRKSGKPVILVAN 115 (429)
T ss_pred -------eEEEEEECCCCCCcc-hhHHHH--HHHHHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHHhCCCEEEEEE
Confidence 368999999986421 111111 23356666899999999999987 6777777888888888899999999
Q ss_pred cCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 361 KADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 361 K~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+|....+.... . .+. ++..++ +++||..|.++.+
T Consensus 116 K~D~~~~~~~~~--~--~~~----lg~~~~--~~vSa~~g~gv~~ 150 (429)
T TIGR03594 116 KIDGKKEDAVAA--E--FYS----LGFGEP--IPISAEHGRGIGD 150 (429)
T ss_pred CccCCcccccHH--H--HHh----cCCCCe--EEEeCCcCCChHH
Confidence 999876432111 1 111 233333 7999999998765
No 38
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.60 E-value=8.3e-15 Score=134.99 Aligned_cols=154 Identities=21% Similarity=0.336 Sum_probs=92.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
|.|+++|.+|+|||||+|+|++... .+++.+.++....+.. ..+.+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~---~~~~~~~~t~~~~~~~-----------------~~~~~-------------- 46 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP---EVAPYPFTTKSLFVGH-----------------FDYKY-------------- 46 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC---ccCCCCCcccceeEEE-----------------EccCc--------------
Confidence 5799999999999999999999873 3444444332221100 00011
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCC-C-HHHHHHHHHHhCC--CCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDI-S-DEFKRVIASLRGN--DDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~-~-~~~~~ll~~l~~~--~~~i 355 (547)
..+.|+||||+....... ...+.+. ........+|++|+++|+++... . +...+++..++.. +.|+
T Consensus 47 --------~~~~i~Dt~G~~~~~~~~-~~~~~~~-~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pv 116 (168)
T cd01897 47 --------LRWQVIDTPGLLDRPLEE-RNTIEMQ-AITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPV 116 (168)
T ss_pred --------eEEEEEECCCcCCccccC-CchHHHH-HHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCe
Confidence 278999999985421000 0001111 11222345799999999976322 1 3334566666544 7899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+....++.. ...+ . .......+++||++|.|+++
T Consensus 117 ilv~NK~Dl~~~~~~~~-~~~~----~---~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 117 IVVLNKIDLLTFEDLSE-IEEE----E---ELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred EEEEEccccCchhhHHH-HHHh----h---hhccCceEEEEecccCCHHH
Confidence 99999999986654433 1111 1 11233457999999999875
No 39
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.60 E-value=1.7e-15 Score=126.53 Aligned_cols=94 Identities=36% Similarity=0.566 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcC--C
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAG--R 87 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g--~ 87 (547)
.+|++|.++|..+|..+|+ ++|+|++++++.+|.+++||.+.|.+||.++|.+++|+||++||+.+|+|+..+++| .
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~~ 81 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNGK 81 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCCC
Confidence 5889999999999999996 689999999999999999999999999999999999999999999999999987765 4
Q ss_pred CCCchhhccCCCCCCCCCCCCCC
Q 008954 88 EITSDILKSGGLMENTEPPSMEG 110 (547)
Q Consensus 88 ~~~~~~~~~~~~~~~~~lp~~~~ 110 (547)
++|.+++. .+-+|+...
T Consensus 82 ~lP~~LP~------~L~p~s~~~ 98 (104)
T PF12763_consen 82 PLPSSLPP------SLIPPSKRP 98 (104)
T ss_dssp ---SSSSG------GGSSSCG--
T ss_pred CCchhcCH------HHCCCCccc
Confidence 78888876 555555443
No 40
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.59 E-value=4.6e-15 Score=134.57 Aligned_cols=147 Identities=22% Similarity=0.284 Sum_probs=97.4
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
|..|+++|++|+|||||+|+|++... ..+++.++|+......+ ..+.+
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~~~------------- 48 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDR--AIVSDIAGTTRDVIEES-----------------IDIGG------------- 48 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCce--EeccCCCCCccceEEEE-----------------EEeCC-------------
Confidence 56899999999999999999999875 56666666654332100 00011
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
..+.++||||+.+.... .... ........+.++|++++++|+.+ ..+.....++.. ..+.|+++|
T Consensus 49 ---------~~~~i~DtpG~~~~~~~-~~~~--~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~--~~~~~vi~v 113 (157)
T cd04164 49 ---------IPVRLIDTAGIRETEDE-IEKI--GIERAREAIEEADLVLFVIDASR-GLDEEDLEILEL--PADKPIIVV 113 (157)
T ss_pred ---------EEEEEEECCCcCCCcch-HHHH--HHHHHHHHHhhCCEEEEEEECCC-CCCHHHHHHHHh--hcCCCEEEE
Confidence 26899999998764211 1100 01134455789999999999987 345555555544 446899999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+||+|+.+..+. . ......+.+.+||.++.++.+
T Consensus 114 ~nK~D~~~~~~~------~-------~~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 114 LNKSDLLPDSEL------L-------SLLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred EEchhcCCcccc------c-------cccCCCceEEEECCCCCCHHH
Confidence 999999865433 0 111233457999999988764
No 41
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.59 E-value=7.9e-15 Score=149.32 Aligned_cols=154 Identities=21% Similarity=0.296 Sum_probs=97.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.-|+|+|.||||||||+|+|++.. ..++..|.||....+ +...+++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~---~~va~y~fTT~~p~i-----------------------g~v~~~~-------- 203 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK---PKIADYPFTTLVPNL-----------------------GVVRVDD-------- 203 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC---ccccCCCCCccCCEE-----------------------EEEEeCC--------
Confidence 459999999999999999999987 567777776643221 0001110
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCC---CCCHHHHHHHHHHhC-----C
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKL---DISDEFKRVIASLRG-----N 351 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~---~~~~~~~~ll~~l~~-----~ 351 (547)
...+.|+||||+..+..+. +.+ .......++++|++|+|+|+++. ...+....+.+.+.. .
T Consensus 204 -------~~~~~i~D~PGli~~a~~~--~gL--g~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~ 272 (329)
T TIGR02729 204 -------GRSFVIADIPGLIEGASEG--AGL--GHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELA 272 (329)
T ss_pred -------ceEEEEEeCCCcccCCccc--ccH--HHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhc
Confidence 0378999999997643211 111 11122236789999999998864 122333334444432 2
Q ss_pred CCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 352 DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 352 ~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+.|+++|+||+|+....+.......+ .+... ...+++||+++.++++
T Consensus 273 ~kp~IIV~NK~DL~~~~~~~~~~~~l----~~~~~---~~vi~iSAktg~GI~e 319 (329)
T TIGR02729 273 EKPRIVVLNKIDLLDEEELAELLKEL----KKALG---KPVFPISALTGEGLDE 319 (329)
T ss_pred cCCEEEEEeCccCCChHHHHHHHHHH----HHHcC---CcEEEEEccCCcCHHH
Confidence 68999999999998765444333333 22122 2347999999998864
No 42
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=8.4e-15 Score=154.73 Aligned_cols=153 Identities=21% Similarity=0.261 Sum_probs=95.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+|||.||||||||||+|++.. ..++..|.||....+ +...+++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak---pkIadypfTTl~P~l-----------------------Gvv~~~~-------- 205 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK---PKIADYPFTTLVPNL-----------------------GVVQAGD-------- 205 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC---ccccccCcccccceE-----------------------EEEEECC--------
Confidence 569999999999999999999987 567888877754331 1111111
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCC----CCHHHHHHHHHHh------
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLD----ISDEFKRVIASLR------ 349 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~----~~~~~~~ll~~l~------ 349 (547)
..++|+||||+..+..+. +++. ......+.++|++|+|+|+++.. .......+...|.
T Consensus 206 --------~~f~laDtPGliegas~g--~gLg--~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l 273 (500)
T PRK12296 206 --------TRFTVADVPGLIPGASEG--KGLG--LDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPAL 273 (500)
T ss_pred --------eEEEEEECCCCccccchh--hHHH--HHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcc
Confidence 278999999998642211 1110 11222468999999999997521 1112222222221
Q ss_pred --------CCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 350 --------GNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 350 --------~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
-.++|+++|+||+|+....++....... +.+. ....+++||+++.++.+
T Consensus 274 ~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~---l~~~----g~~Vf~ISA~tgeGLdE 330 (500)
T PRK12296 274 DGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPE---LEAR----GWPVFEVSAASREGLRE 330 (500)
T ss_pred cccchhhhhcCCCEEEEEECccchhhHHHHHHHHHH---HHHc----CCeEEEEECCCCCCHHH
Confidence 1368999999999997654443322211 1111 23458999999999875
No 43
>PRK11058 GTPase HflX; Provisional
Probab=99.58 E-value=6.5e-15 Score=154.73 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=94.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
+.|+|+|.+|||||||+|+|+|.++ .+++.|+||....... ..+.+ .
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~---~v~~~~~tTld~~~~~-----------------i~l~~-----~-------- 244 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARV---YAADQLFATLDPTLRR-----------------IDVAD-----V-------- 244 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce---eeccCCCCCcCCceEE-----------------EEeCC-----C--------
Confidence 7899999999999999999999884 3666666654332100 00001 0
Q ss_pred hcccccccccceEEcCCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH---HHHHHHHhCCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF---KRVIASLRGNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~---~~ll~~l~~~~~~i 355 (547)
..+.++||||+... ....++. |. .+...+..||++|+|+|++++...+.. .+++..+...+.|+
T Consensus 245 --------~~~~l~DTaG~~r~lp~~lve~---f~-~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pv 312 (426)
T PRK11058 245 --------GETVLADTVGFIRHLPHDLVAA---FK-ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPT 312 (426)
T ss_pred --------CeEEEEecCcccccCCHHHHHH---HH-HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCE
Confidence 26789999999542 1111221 21 234447899999999999874332322 34555555557899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+...... . .... . ...+. .+++||++|.|+++
T Consensus 313 IiV~NKiDL~~~~~~-~-~~~~-----~-~~~~~--~v~ISAktG~GIde 352 (426)
T PRK11058 313 LLVMNKIDMLDDFEP-R-IDRD-----E-ENKPI--RVWLSAQTGAGIPL 352 (426)
T ss_pred EEEEEcccCCCchhH-H-HHHH-----h-cCCCc--eEEEeCCCCCCHHH
Confidence 999999999753211 1 1110 0 11121 36899999999875
No 44
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.58 E-value=4.1e-14 Score=133.92 Aligned_cols=157 Identities=17% Similarity=0.277 Sum_probs=97.4
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCC-CCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCN-YPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~-~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
..+.|+++|.+|+|||||+|+|++.. . ..+++.+++++..... .+ +
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~--~~~~~~~~~t~~~~~~----------------------~~---~------ 69 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNL--ARTSKTPGRTQLINFF----------------------EV---N------ 69 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCc--ccccCCCCceeEEEEE----------------------ec---C------
Confidence 45789999999999999999999975 3 4555555544322210 00 0
Q ss_pred hhhhcccccccccceEEcCCCCCChhh-hhhhcccChHHHHHHHh---hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEK-QRTQRTYDFTGVISWFA---AKCDLILLLFDPHKLDISDEFKRVIASLRGND 352 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~-~~~~~~~~~~~~~~~~~---~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~ 352 (547)
..+.|+||||+..... ....+ .+......++ ..++++++++|+.. ..+....++++.+...+
T Consensus 70 -----------~~l~l~DtpG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~~~~ 135 (196)
T PRK00454 70 -----------DKLRLVDLPGYGYAKVSKEEKE--KWQKLIEEYLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLKEYG 135 (196)
T ss_pred -----------CeEEEeCCCCCCCcCCCchHHH--HHHHHHHHHHHhCccceEEEEEEecCC-CCCHHHHHHHHHHHHcC
Confidence 2789999999753210 00000 1112233333 34578888888776 34454455666666678
Q ss_pred CeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.|+++++||+|+.+..+..+....+...+... ....+++||+++.++.+
T Consensus 136 ~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~----~~~~~~~Sa~~~~gi~~ 184 (196)
T PRK00454 136 IPVLIVLTKADKLKKGERKKQLKKVRKALKFG----DDEVILFSSLKKQGIDE 184 (196)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHHHHHHhc----CCceEEEEcCCCCCHHH
Confidence 89999999999987655544433332222221 23347899999988764
No 45
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.3e-14 Score=154.58 Aligned_cols=149 Identities=23% Similarity=0.251 Sum_probs=104.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..||++|+||+|||||+|+|+|.. ..+|+-|++|--.- +..+.+.+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~---q~VgNwpGvTVEkk-----------------eg~~~~~~-------------- 49 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN---QKVGNWPGVTVEKK-----------------EGKLKYKG-------------- 49 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC---ceecCCCCeeEEEE-----------------EEEEEecC--------------
Confidence 459999999999999999999999 78888665553221 11122222
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHh--hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA--AKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
+.+.++|.||..+-.....+ ..+++.++ .++|+|+.|+|++++ +....+--++.+.+.|+++
T Consensus 50 --------~~i~ivDLPG~YSL~~~S~D-----E~Var~~ll~~~~D~ivnVvDAtnL---eRnLyltlQLlE~g~p~il 113 (653)
T COG0370 50 --------HEIEIVDLPGTYSLTAYSED-----EKVARDFLLEGKPDLIVNVVDATNL---ERNLYLTLQLLELGIPMIL 113 (653)
T ss_pred --------ceEEEEeCCCcCCCCCCCch-----HHHHHHHHhcCCCCEEEEEcccchH---HHHHHHHHHHHHcCCCeEE
Confidence 37999999999985322111 34677764 678999999999874 3345556677788999999
Q ss_pred EeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|++|.....-+.-...++ .+.++ ++++++||.+|.|+++
T Consensus 114 aLNm~D~A~~~Gi~ID~~~L----~~~LG---vPVv~tvA~~g~G~~~ 154 (653)
T COG0370 114 ALNMIDEAKKRGIRIDIEKL----SKLLG---VPVVPTVAKRGEGLEE 154 (653)
T ss_pred EeccHhhHHhcCCcccHHHH----HHHhC---CCEEEEEeecCCCHHH
Confidence 99999987543222222222 33344 4457999999999775
No 46
>PRK04213 GTP-binding protein; Provisional
Probab=99.57 E-value=4.6e-14 Score=134.33 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=92.3
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..+.|+++|++|+|||||+|+|.|.. ..++..|+++...... .+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~---~~~~~~~~~t~~~~~~----------------------~~----------- 51 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK---VRVGKRPGVTRKPNHY----------------------DW----------- 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CccCCCCceeeCceEE----------------------ee-----------
Confidence 34789999999999999999999987 4566666655432200 00
Q ss_pred hhhcccccccccceEEcCCCCCChh--hhhhhcccChHHHH----HHHhhcCCeEEEEecCCCCC----------CCHHH
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGE--KQRTQRTYDFTGVI----SWFAAKCDLILLLFDPHKLD----------ISDEF 341 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~--~~~~~~~~~~~~~~----~~~~~~aD~illv~d~~~~~----------~~~~~ 341 (547)
..+.++||||+.... ..+.... +.... +..+..+|++++++|+.... ....+
T Consensus 52 ----------~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~ 119 (201)
T PRK04213 52 ----------GDFILTDLPGFGFMSGVPKEVQEK--IKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPID 119 (201)
T ss_pred ----------cceEEEeCCccccccccCHHHHHH--HHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHH
Confidence 257899999974311 0000000 11111 12245678999999986421 11233
Q ss_pred HHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhh--ccCCCCcEEEEecccCCCCCCC
Q 008954 342 KRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK--VLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 342 ~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~--~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.+++..+...+.|+++|+||+|+.... ......+...++. .........+++||++| |+++
T Consensus 120 ~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~ 182 (201)
T PRK04213 120 VEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEE 182 (201)
T ss_pred HHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHH
Confidence 556666666789999999999997543 1111222212221 00000123479999999 9874
No 47
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.57 E-value=1.6e-14 Score=136.57 Aligned_cols=106 Identities=25% Similarity=0.173 Sum_probs=67.3
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
..+.++||||..+- .......+..+|++++|+|+.+ +......+.+......+.|+++|+||+|+...
T Consensus 68 ~~~~i~DtpG~~~~-----------~~~~~~~~~~~d~vi~VvD~~~-~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 68 LQITLVDCPGHASL-----------IRTIIGGAQIIDLMLLVVDATK-GIQTQTAECLVIGEILCKKLIVVLNKIDLIPE 135 (192)
T ss_pred ceEEEEECCCcHHH-----------HHHHHHHHhhCCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 37899999998421 1122233578999999999986 44444444444334447899999999999865
Q ss_pred HHHHHHHHHHHHhhhhcc---CCCCcEEEEecccCCCCCCC
Q 008954 368 QQLMRVYGALMWSLGKVL---NTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 368 ~~l~~~~~~l~~~l~~~~---~~~~v~~v~isa~~~~~l~~ 405 (547)
.+.......+...+++.+ ....++.+++||++|.|+.+
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~ 176 (192)
T cd01889 136 EERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAE 176 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHH
Confidence 444333333322222221 22344568999999999864
No 48
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.57 E-value=1.4e-14 Score=162.66 Aligned_cols=152 Identities=18% Similarity=0.296 Sum_probs=107.5
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
-+.|+|+|.+|+|||||+|+|+|... +.+++.|++|+..+.... .+.+
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~--~iv~~~pGvT~d~~~~~~-----------------~~~~------------- 322 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRRE--AVVEDTPGVTRDRVSYDA-----------------EWAG------------- 322 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCeeEEEEEEEE-----------------EECC-------------
Confidence 36899999999999999999999886 788888888776542110 0111
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
..+.++||||+.... +.+.. .+...+...+..+|++|+|+|+.+ +....+.++++.+...+.|+++|
T Consensus 323 ---------~~~~liDT~G~~~~~-~~~~~--~~~~~~~~~~~~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~~~pvIlV 389 (712)
T PRK09518 323 ---------TDFKLVDTGGWEADV-EGIDS--AIASQAQIAVSLADAVVFVVDGQV-GLTSTDERIVRMLRRAGKPVVLA 389 (712)
T ss_pred ---------EEEEEEeCCCcCCCC-ccHHH--HHHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEE
Confidence 368899999987421 11211 123345556899999999999987 56676777888888889999999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+||+|+....... ...|.+ +...+ +++||.+|.|+.+
T Consensus 390 ~NK~D~~~~~~~~----~~~~~l----g~~~~--~~iSA~~g~GI~e 426 (712)
T PRK09518 390 VNKIDDQASEYDA----AEFWKL----GLGEP--YPISAMHGRGVGD 426 (712)
T ss_pred EECcccccchhhH----HHHHHc----CCCCe--EEEECCCCCCchH
Confidence 9999986542211 111221 22333 6899999999886
No 49
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.57 E-value=6.5e-14 Score=135.19 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=75.6
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHh--hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCc
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA--AKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQV 365 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~ 365 (547)
..++|+||||+..-. ..+...+ ..+|++++|+|+.. +....+.+++..+...+.|+++|+||+|++
T Consensus 84 ~~i~liDtpG~~~~~-----------~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 84 KLVTFIDLAGHERYL-----------KTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred cEEEEEECCCcHHHH-----------HHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 468999999985321 1222223 37999999999976 677888899999888899999999999998
Q ss_pred ChHHHHHHHHHHHHhhhhc---------------------cCC-CCcEEEEecccCCCCCCC
Q 008954 366 DTQQLMRVYGALMWSLGKV---------------------LNT-PEVVRVYIGSFNDKPING 405 (547)
Q Consensus 366 ~~~~l~~~~~~l~~~l~~~---------------------~~~-~~v~~v~isa~~~~~l~~ 405 (547)
+.+++.+....+...+... ... ..++.+++||.+|.|++.
T Consensus 152 ~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~ 213 (224)
T cd04165 152 PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDL 213 (224)
T ss_pred CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHH
Confidence 7766666665554333310 111 123567899999999864
No 50
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=2.1e-14 Score=153.10 Aligned_cols=151 Identities=20% Similarity=0.298 Sum_probs=102.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
++|+|+|.+|+|||||+|.|+|... +.++..|++++...... ..+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~--~~v~~~~~~t~d~~~~~-----------------~~~~~-------------- 48 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD--AIVADTPGVTRDRIYGE-----------------AEWLG-------------- 48 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCCCcccceEEE-----------------EEECC--------------
Confidence 5799999999999999999999886 67777777665433100 00111
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
..+.++||||+...... .... +...+..++..+|++|+|+|+.+ +.+..+.++.+.++..+.|+++|+
T Consensus 49 --------~~~~liDT~G~~~~~~~-~~~~--~~~~~~~~~~~ad~il~vvd~~~-~~~~~~~~~~~~l~~~~~piilv~ 116 (435)
T PRK00093 49 --------REFILIDTGGIEPDDDG-FEKQ--IREQAELAIEEADVILFVVDGRA-GLTPADEEIAKILRKSNKPVILVV 116 (435)
T ss_pred --------cEEEEEECCCCCCcchh-HHHH--HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCcEEEEE
Confidence 27899999999862111 1110 12234556789999999999987 566666777777777789999999
Q ss_pred ccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 360 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 360 NK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
||+|..+.++... .. +. ++..++ +++||.+|.++.+
T Consensus 117 NK~D~~~~~~~~~---~~-~~----lg~~~~--~~iSa~~g~gv~~ 152 (435)
T PRK00093 117 NKVDGPDEEADAY---EF-YS----LGLGEP--YPISAEHGRGIGD 152 (435)
T ss_pred ECccCccchhhHH---HH-Hh----cCCCCC--EEEEeeCCCCHHH
Confidence 9999765322111 11 11 233334 7899999998765
No 51
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.56 E-value=1.9e-14 Score=137.35 Aligned_cols=152 Identities=22% Similarity=0.301 Sum_probs=90.9
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
-+.|+|+|++|||||||+|+|++... .++..+.++...... ...+.+ .
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~---~~~~~~~~t~~~~~~-----------------~~~~~~-----~------- 88 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADV---YAEDQLFATLDPTTR-----------------RLRLPD-----G------- 88 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchh---ccCCccceeccceeE-----------------EEEecC-----C-------
Confidence 36899999999999999999999873 333333222111100 000000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH---HHHHHHHhCCCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF---KRVIASLRGNDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~---~~ll~~l~~~~~~i 355 (547)
..+.++||||+.+...+..... +.. ....+..+|++++++|+.+....... .+++..+...+.|+
T Consensus 89 ---------~~~~i~Dt~G~~~~~~~~~~~~--~~~-~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~v 156 (204)
T cd01878 89 ---------REVLLTDTVGFIRDLPHQLVEA--FRS-TLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPM 156 (204)
T ss_pred ---------ceEEEeCCCccccCCCHHHHHH--HHH-HHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCE
Confidence 2688999999965311111111 111 22236789999999999874333322 24444444456899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+....... .. ........+++||+++.|+.+
T Consensus 157 iiV~NK~Dl~~~~~~~----~~-------~~~~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 157 ILVLNKIDLLDDEELE----ER-------LEAGRPDAVFISAKTGEGLDE 195 (204)
T ss_pred EEEEEccccCChHHHH----HH-------hhcCCCceEEEEcCCCCCHHH
Confidence 9999999998654432 11 111123347999999998764
No 52
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=3e-14 Score=148.84 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=94.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccc-cchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFG-GAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~-~~~~~~~~ 278 (547)
.-|+|+|.||||||||||+|++.. ..++..|.||....+ +...+. +
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak---~kIa~ypfTTl~Pnl-----------------------G~v~~~~~------- 205 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK---PKIANYHFTTLVPNL-----------------------GVVETDDG------- 205 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC---CccccCCcceeceEE-----------------------EEEEEeCC-------
Confidence 359999999999999999999988 556777777653321 111111 1
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCC---CCCHHHHHHHHHHhC-----
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKL---DISDEFKRVIASLRG----- 350 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~---~~~~~~~~ll~~l~~----- 350 (547)
..+.++||||+..+..+.. ++ .......++++|++++|+|+++. ...+.+..+...+..
T Consensus 206 ---------~~~~laD~PGliega~~~~--gL--g~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L 272 (424)
T PRK12297 206 ---------RSFVMADIPGLIEGASEGV--GL--GHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRL 272 (424)
T ss_pred ---------ceEEEEECCCCcccccccc--hH--HHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhc
Confidence 3789999999976422111 11 01112236789999999999753 222334444555543
Q ss_pred CCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 351 NDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 351 ~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.++|+++|+||+|+....+.. ..+. +.+. ...+++||+++.++++
T Consensus 273 ~~kP~IVV~NK~DL~~~~e~l---~~l~----~~l~---~~i~~iSA~tgeGI~e 317 (424)
T PRK12297 273 LERPQIVVANKMDLPEAEENL---EEFK----EKLG---PKVFPISALTGQGLDE 317 (424)
T ss_pred cCCcEEEEEeCCCCcCCHHHH---HHHH----HHhC---CcEEEEeCCCCCCHHH
Confidence 368999999999985432211 1121 1122 2347899999999875
No 53
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.56 E-value=3.6e-15 Score=137.55 Aligned_cols=169 Identities=22% Similarity=0.323 Sum_probs=128.9
Q ss_pred chhhhhhhccCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCC-----
Q 008954 174 LKPLEATYRFNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPD----- 246 (547)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~----- 246 (547)
++.+.+. |+.+. .+++.+++ .|.+|+|+||+|+|||||+++|.+.+ .|+.+.+.+ +|..
T Consensus 5 i~~l~K~--fg~~~--VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE--------~~~~G~I~i--~g~~~~~~~ 70 (240)
T COG1126 5 IKNLSKS--FGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--------EPDSGSITV--DGEDVGDKK 70 (240)
T ss_pred EEeeeEE--eCCeE--EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc--------CCCCceEEE--CCEeccchh
Confidence 3455555 55543 67777766 99999999999999999999999999 344444443 2211
Q ss_pred --ccccCCceeeecCCCCCCCccccccchhh--------hhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccC
Q 008954 247 --ERTIPGNTIAVHADLPFSGLTTFGGAFLS--------KFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYD 311 (547)
Q Consensus 247 --~~~~~g~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~ 311 (547)
..-...+.+++|....|+.++..+|..+. +.+.......+|+.+.+-| .|+.+|| ++||+.
T Consensus 71 ~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVA---- 146 (240)
T COG1126 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVA---- 146 (240)
T ss_pred hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHH----
Confidence 11234566789999999999999987633 3444556667888888888 7888887 556654
Q ss_pred hHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 312 FTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 312 ~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+||+++-+++++||+ ++|.++....+..+++..+.+.|.++++|-+-+.
T Consensus 147 ---IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~ 197 (240)
T COG1126 147 ---IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG 197 (240)
T ss_pred ---HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH
Confidence 999999999999999 7788888888899999999999999999877554
No 54
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.56 E-value=4.1e-14 Score=130.17 Aligned_cols=154 Identities=20% Similarity=0.268 Sum_probs=92.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
|.|+|+|.+|+|||||+|+|++..+ .. ...++++....... . +... ..+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~--~~-~~~~~~t~~~~~~~-----------~--~~~~-~~~-------------- 49 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV--AA-GEAGGITQHIGAFE-----------V--PAEV-LKI-------------- 49 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc--cc-ccCCCeEEeeccEE-----------E--eccc-CCc--------------
Confidence 5799999999999999999998774 22 22222221110000 0 0000 001
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
..+.++||||...- .......+..+|++++++|+++ ....+..+.+..+...+.|+++|+
T Consensus 50 --------~~~~iiDtpG~~~~-----------~~~~~~~~~~~d~il~v~d~~~-~~~~~~~~~~~~~~~~~~p~ivv~ 109 (168)
T cd01887 50 --------PGITFIDTPGHEAF-----------TNMRARGASLTDIAILVVAADD-GVMPQTIEAIKLAKAANVPFIVAL 109 (168)
T ss_pred --------ceEEEEeCCCcHHH-----------HHHHHHHHhhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEE
Confidence 37899999997531 1123334689999999999987 334555666666666789999999
Q ss_pred ccCCCcCh--HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 360 NKADQVDT--QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 360 NK~D~~~~--~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
||+|+... +.+............+.. ...+..+++|+..|.++.+
T Consensus 110 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 110 NKIDKPNANPERVKNELSELGLQGEDEW-GGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred EceecccccHHHHHHHHHHhhccccccc-cCcCcEEEeecccCCCHHH
Confidence 99998743 222222221110000001 1234458999999998764
No 55
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.54 E-value=2.3e-14 Score=138.34 Aligned_cols=169 Identities=21% Similarity=0.219 Sum_probs=98.1
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCc-------------ccceeEEEEeCCCccccCCceeee-cCCCCCCCcc
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEP-------------TTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLT 267 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~-------------~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~ 267 (547)
|+++|+.++|||||+.+|+...- . ++... ++.+...+.+........|+++.. ...+.+.+
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~g--~-i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~-- 76 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLG--G-VDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK-- 76 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHhc--C-cCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--
Confidence 89999999999999999986531 1 11100 000111122223333455666522 22222222
Q ss_pred ccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCC------CCCHHH
Q 008954 268 TFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKL------DISDEF 341 (547)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~------~~~~~~ 341 (547)
..+.++||||+.+- .......+..+|++++|+|+.+. +...+.
T Consensus 77 --------------------~~i~liDtpG~~~~-----------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~ 125 (219)
T cd01883 77 --------------------YRFTILDAPGHRDF-----------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQT 125 (219)
T ss_pred --------------------eEEEEEECCChHHH-----------HHHHHHHhhhCCEEEEEEECCCCccccccccccch
Confidence 37999999997431 11233346789999999999863 233334
Q ss_pred HHHHHHHhCCC-CeEEEEeccCCCcC----hHHHHHHHHHHHHhhhhcc-CCCCcEEEEecccCCCCCCCC
Q 008954 342 KRVIASLRGND-DKIRVVLNKADQVD----TQQLMRVYGALMWSLGKVL-NTPEVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 342 ~~ll~~l~~~~-~~iivVlNK~D~~~----~~~l~~~~~~l~~~l~~~~-~~~~v~~v~isa~~~~~l~~~ 406 (547)
.+.+......+ .|+++|+||+|+.. ..........+...+...- ....++.+++||++|.|+.+.
T Consensus 126 ~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~ 196 (219)
T cd01883 126 REHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEK 196 (219)
T ss_pred HHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcC
Confidence 44444444444 68999999999983 2333343333322222221 122466789999999999963
No 56
>COG2262 HflX GTPases [General function prediction only]
Probab=99.54 E-value=6.7e-14 Score=140.79 Aligned_cols=145 Identities=23% Similarity=0.364 Sum_probs=97.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCC------cccceeEEEEeCCCccccCCceeeecCCCCCCCccccccch
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPE------PTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAF 273 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~------~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 273 (547)
|.|+++|.+|||||||+|+|+|..+ .+... |+|-+..+ .+ |
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~---~~~d~LFATLdpttR~~~l-----------------------~~----g--- 239 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADV---YVADQLFATLDPTTRRIEL-----------------------GD----G--- 239 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCe---eccccccccccCceeEEEe-----------------------CC----C---
Confidence 7899999999999999999999884 32222 22222221 00 0
Q ss_pred hhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH---HHHHHHhC
Q 008954 274 LSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK---RVIASLRG 350 (547)
Q Consensus 274 ~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~---~ll~~l~~ 350 (547)
..+.+.||-|+.+.-...+-.. ...+...+..||++|+|+|++++....... +++..+..
T Consensus 240 --------------~~vlLtDTVGFI~~LP~~LV~A---FksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~ 302 (411)
T COG2262 240 --------------RKVLLTDTVGFIRDLPHPLVEA---FKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGA 302 (411)
T ss_pred --------------ceEEEecCccCcccCChHHHHH---HHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCC
Confidence 3789999999997522211111 123444578999999999999976555444 44555555
Q ss_pred CCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 351 NDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 351 ~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
...|+++|+||+|++........... . .+ .++++||.+|.|++.
T Consensus 303 ~~~p~i~v~NKiD~~~~~~~~~~~~~-------~--~~--~~v~iSA~~~~gl~~ 346 (411)
T COG2262 303 DEIPIILVLNKIDLLEDEEILAELER-------G--SP--NPVFISAKTGEGLDL 346 (411)
T ss_pred CCCCEEEEEecccccCchhhhhhhhh-------c--CC--CeEEEEeccCcCHHH
Confidence 67899999999999876552222211 1 12 358999999999874
No 57
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.54 E-value=1.7e-13 Score=129.79 Aligned_cols=105 Identities=24% Similarity=0.268 Sum_probs=68.7
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh-
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT- 367 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~- 367 (547)
.+.++||||... |......++..+|++++|+|+.+ +.......++..+...+.|+++|+||+|+...
T Consensus 66 ~~~l~DtpG~~~-----------~~~~~~~~~~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~ 133 (194)
T cd01891 66 KINIVDTPGHAD-----------FGGEVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALELGLKPIVVINKIDRPDAR 133 (194)
T ss_pred EEEEEECCCcHH-----------HHHHHHHHHHhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 689999999853 22345566789999999999986 44455555666666678899999999999642
Q ss_pred -HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 368 -QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 368 -~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.+.......+...++..........+++||++|.++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence 22222222221111111111234558999999999876
No 58
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.54 E-value=3.8e-14 Score=140.56 Aligned_cols=128 Identities=19% Similarity=0.204 Sum_probs=83.9
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceee-ecCCCCCCCccccccchhhhhhhh
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIA-VHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
|+++|++|+|||||+|+|+...-.....+. .... ..+++........|+++. ....+.|.+
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~--v~~~-~~~~D~~~~E~~rgiti~~~~~~~~~~~--------------- 63 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGE--VHGG-GATMDFMEQERERGITIQSAATTCFWKD--------------- 63 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCccccc--ccCC-ccccCCCccccCCCcCeeccEEEEEECC---------------
Confidence 899999999999999999854310011110 0111 111222222234455441 111122222
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEec
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLN 360 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlN 360 (547)
.++.|+||||+.+ |...+.+.+..+|++++|+|+.+ +.......+++.+...+.|+++++|
T Consensus 64 -------~~i~liDTPG~~d-----------f~~~~~~~l~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~~~p~ivviN 124 (270)
T cd01886 64 -------HRINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVA-GVEPQTETVWRQADRYNVPRIAFVN 124 (270)
T ss_pred -------EEEEEEECCCcHH-----------HHHHHHHHHHHcCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 3799999999863 22345667899999999999987 6677778888888888899999999
Q ss_pred cCCCcC
Q 008954 361 KADQVD 366 (547)
Q Consensus 361 K~D~~~ 366 (547)
|+|+..
T Consensus 125 K~D~~~ 130 (270)
T cd01886 125 KMDRTG 130 (270)
T ss_pred CCCCCC
Confidence 999874
No 59
>CHL00071 tufA elongation factor Tu
Probab=99.54 E-value=7.6e-14 Score=147.03 Aligned_cols=168 Identities=21% Similarity=0.157 Sum_probs=106.5
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccchhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~ 277 (547)
...|+++|++++|||||+|+|++.. ..++.... ..+..++.......+|+++.. ...+.. ++
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~---~~~~~~~~--~~~~~~d~~~~e~~rg~T~~~~~~~~~~------~~------ 74 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTL---AAKGGAKA--KKYDEIDSAPEEKARGITINTAHVEYET------EN------ 74 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh---Cccccccc--cccccccCChhhhcCCEeEEccEEEEcc------CC------
Confidence 3569999999999999999999875 22211111 000112222233456666532 111111 11
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IR 356 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-ii 356 (547)
.++.|+||||+.. |...+...+..+|++++++|+.. +...++.+++..+...+.| ++
T Consensus 75 ----------~~~~~iDtPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~g~~~iI 132 (409)
T CHL00071 75 ----------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTKEHILLAKQVGVPNIV 132 (409)
T ss_pred ----------eEEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEE
Confidence 3789999999642 22344555789999999999987 6778888888888888888 77
Q ss_pred EEeccCCCcChHHHHHHH-HHHHHhhhhcc-CCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVY-GALMWSLGKVL-NTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~-~~l~~~l~~~~-~~~~v~~v~isa~~~~~l~~ 405 (547)
+++||+|+++.++..+.. ..+...+.... ....++.+++||+.|.++..
T Consensus 133 vvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~ 183 (409)
T CHL00071 133 VFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALT 183 (409)
T ss_pred EEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccc
Confidence 899999999765543332 23322333321 11236778999999987654
No 60
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.54 E-value=1.5e-13 Score=130.33 Aligned_cols=120 Identities=20% Similarity=0.280 Sum_probs=74.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|++|+|||||+|+|+|... +....+.++.... +. ....+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~---~~~~~~~~~~~~~-------------t~---~~~~~~--------------- 47 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH---EEEGAAPTGVVET-------------TM---KRTPYP--------------- 47 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC---CCCCccccCcccc-------------cc---Cceeee---------------
Confidence 4699999999999999999999763 1111111110000 00 000000
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
.+....+.++||||+..... ... ++ .....+..+|+++++.+. ..+..+..+++.+...+.++++|+
T Consensus 48 ----~~~~~~l~l~DtpG~~~~~~-~~~---~~--l~~~~~~~~d~~l~v~~~---~~~~~d~~~~~~l~~~~~~~ilV~ 114 (197)
T cd04104 48 ----HPKFPNVTLWDLPGIGSTAF-PPD---DY--LEEMKFSEYDFFIIISST---RFSSNDVKLAKAIQCMGKKFYFVR 114 (197)
T ss_pred ----cCCCCCceEEeCCCCCcccC-CHH---HH--HHHhCccCcCEEEEEeCC---CCCHHHHHHHHHHHHhCCCEEEEE
Confidence 00013789999999975421 111 01 112225788999998654 356677788888888889999999
Q ss_pred ccCCCcC
Q 008954 360 NKADQVD 366 (547)
Q Consensus 360 NK~D~~~ 366 (547)
||+|+..
T Consensus 115 nK~D~~~ 121 (197)
T cd04104 115 TKVDRDL 121 (197)
T ss_pred ecccchh
Confidence 9999964
No 61
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.54 E-value=2.7e-14 Score=129.86 Aligned_cols=145 Identities=23% Similarity=0.257 Sum_probs=90.8
Q ss_pred EeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhccc
Q 008954 204 LLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMS 283 (547)
Q Consensus 204 lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (547)
|+|.+|+|||||+|+++|.. ..++..|+++..... ....+.+
T Consensus 1 l~G~~~~GKssl~~~~~~~~---~~~~~~~~~t~~~~~-----------------~~~~~~~------------------ 42 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR---QKVGNWPGVTVEKKE-----------------GRFKLGG------------------ 42 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc---ccccCCCCcccccce-----------------EEEeeCC------------------
Confidence 58999999999999999987 555665655542210 0000111
Q ss_pred ccccccceEEcCCCCCChhhhhhhcccChHHHHHHHh--hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 284 HPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA--AKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 284 ~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
..+.++||||+........+ ..+.+.++ ..+|++++++|+.+. +.....+..+...+.|+++|+||
T Consensus 43 ----~~~~liDtpG~~~~~~~~~~-----~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~iiv~NK 110 (158)
T cd01879 43 ----KEIEIVDLPGTYSLSPYSED-----EKVARDFLLGEKPDLIVNVVDATNL---ERNLYLTLQLLELGLPVVVALNM 110 (158)
T ss_pred ----eEEEEEECCCccccCCCChh-----HHHHHHHhcCCCCcEEEEEeeCCcc---hhHHHHHHHHHHcCCCEEEEEeh
Confidence 26899999998653211111 11233344 599999999999763 22334555666678999999999
Q ss_pred CCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 362 ADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 362 ~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+.....+......+ .+.++ ...+++||..+.++..
T Consensus 111 ~Dl~~~~~~~~~~~~~----~~~~~---~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 111 IDEAEKRGIKIDLDKL----SELLG---VPVVPTSARKGEGIDE 147 (158)
T ss_pred hhhcccccchhhHHHH----HHhhC---CCeEEEEccCCCCHHH
Confidence 9997653332222222 12122 2347999999988764
No 62
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.53 E-value=5.6e-14 Score=156.01 Aligned_cols=189 Identities=19% Similarity=0.174 Sum_probs=112.7
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCC----------Cccccee--E--EEEeCCCccccCCceeeec-CCCCCC
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGP----------EPTTDRF--V--VVMSGPDERTIPGNTIAVH-ADLPFS 264 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~----------~~~T~~~--~--~i~~~~~~~~~~g~~~~~~-~~~~~~ 264 (547)
..|+++|++|+|||||+|+|+...- .+++. .++||+. . .+++...+....|.++... ..+.+.
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~--~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSK--MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 5699999999999999999998774 44422 3444322 2 2344444445566665221 111111
Q ss_pred CccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHH
Q 008954 265 GLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRV 344 (547)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~l 344 (547)
+ .++.|+||||+.. |.......+..+|++++|+|+.. +...+..+.
T Consensus 103 ~----------------------~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~-g~~~~t~e~ 148 (632)
T PRK05506 103 K----------------------RKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARK-GVLTQTRRH 148 (632)
T ss_pred C----------------------ceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCC-CccccCHHH
Confidence 1 3789999999742 11122334789999999999976 454444444
Q ss_pred HHHHhCCC-CeEEEEeccCCCcC--hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCCCCCCCcchHhhHHHHH
Q 008954 345 IASLRGND-DKIRVVLNKADQVD--TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINGEVVGPIGQELFEKEQD 421 (547)
Q Consensus 345 l~~l~~~~-~~iivVlNK~D~~~--~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~~~~~~~~~~~~~~~~e 421 (547)
+..+...+ .++++|+||+|+++ .+.+......+. .+.+...+.++..+++||++|.++.+.+ +..+|+.. .
T Consensus 149 ~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~-~~~~~~~~~~~~iipiSA~~g~ni~~~~--~~~~wy~g---~ 222 (632)
T PRK05506 149 SFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYR-AFAAKLGLHDVTFIPISALKGDNVVTRS--ARMPWYEG---P 222 (632)
T ss_pred HHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHH-HHHHHcCCCCccEEEEecccCCCccccc--cCCCcccH---h
Confidence 44444444 57889999999985 222333322221 1112234455566899999999998632 23455543 3
Q ss_pred HHHHHHhhc
Q 008954 422 DLLMDLIDI 430 (547)
Q Consensus 422 ~l~~~l~~~ 430 (547)
.|+..|..+
T Consensus 223 tL~~~l~~~ 231 (632)
T PRK05506 223 SLLEHLETV 231 (632)
T ss_pred HHHHHHhcC
Confidence 444444433
No 63
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.52 E-value=8.5e-14 Score=147.79 Aligned_cols=191 Identities=18% Similarity=0.170 Sum_probs=110.1
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCC------------cccceeEEEEeCCCccccCCceeee-cCCCCCCCc
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPE------------PTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGL 266 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~------------~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l 266 (547)
..|+++|++++|||||+|+|++..- +.+... ..+..+..+++...+...+|+++.. ...+.+.+
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g--~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~- 83 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETG--AIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK- 83 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcC--CcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC-
Confidence 5699999999999999999998763 333221 1112222333444445567777632 22122222
Q ss_pred cccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCC-CCCHHHHHHH
Q 008954 267 TTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKL-DISDEFKRVI 345 (547)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~-~~~~~~~~ll 345 (547)
..+.|+||||+..- .......+..+|++|+|+|+.+. +...+..+.+
T Consensus 84 ---------------------~~i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~ 131 (425)
T PRK12317 84 ---------------------YYFTIVDCPGHRDF-----------VKNMITGASQADAAVLVVAADDAGGVMPQTREHV 131 (425)
T ss_pred ---------------------eEEEEEECCCcccc-----------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHH
Confidence 37999999997431 11122235789999999999752 3334444555
Q ss_pred HHHhCCCC-eEEEEeccCCCcCh--HHHHHHHHHHHHhhhhccCC--CCcEEEEecccCCCCCCCCCCCCcchHhhHHHH
Q 008954 346 ASLRGNDD-KIRVVLNKADQVDT--QQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPINGEVVGPIGQELFEKEQ 420 (547)
Q Consensus 346 ~~l~~~~~-~iivVlNK~D~~~~--~~l~~~~~~l~~~l~~~~~~--~~v~~v~isa~~~~~l~~~~~~~~~~~~~~~~~ 420 (547)
..+...+. ++++|+||+|+... +.+......+...+. ..++ ..+..+++||++|.++.+.. ....| |..
T Consensus 132 ~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~-~~g~~~~~~~ii~iSA~~g~gi~~~~--~~~~w-y~g-- 205 (425)
T PRK12317 132 FLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLK-MVGYKPDDIPFIPVSAFEGDNVVKKS--ENMPW-YNG-- 205 (425)
T ss_pred HHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHH-hhCCCcCcceEEEeecccCCCccccc--cCCCc-ccH--
Confidence 54444454 68999999999752 222222222211111 1222 13456899999999998742 12333 432
Q ss_pred HHHHHHHhhch
Q 008954 421 DDLLMDLIDIP 431 (547)
Q Consensus 421 e~l~~~l~~~~ 431 (547)
..|++.|..++
T Consensus 206 ~~L~~~l~~~~ 216 (425)
T PRK12317 206 PTLLEALDNLK 216 (425)
T ss_pred HHHHHHHhcCC
Confidence 34555554444
No 64
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.52 E-value=6.7e-14 Score=156.60 Aligned_cols=153 Identities=22% Similarity=0.227 Sum_probs=100.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||+|+|+|.. ..+++.|++|...... ...+.+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~---~~vgn~pGvTve~k~g-----------------~~~~~~-------------- 49 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR---QRVGNWAGVTVERKEG-----------------QFSTTD-------------- 49 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC---CccCCCCCceEeeEEE-----------------EEEcCc--------------
Confidence 579999999999999999999988 6777777766532210 000111
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHH--hhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWF--AAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~--~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
..+.++||||+.+-.........+ ..+++.+ ...+|++++|+|+++. +....+..++.+.+.|+++
T Consensus 50 --------~~i~lvDtPG~ysl~~~~~~~s~~-E~i~~~~l~~~~aD~vI~VvDat~l---er~l~l~~ql~e~giPvIv 117 (772)
T PRK09554 50 --------HQVTLVDLPGTYSLTTISSQTSLD-EQIACHYILSGDADLLINVVDASNL---ERNLYLTLQLLELGIPCIV 117 (772)
T ss_pred --------eEEEEEECCCccccccccccccHH-HHHHHHHHhccCCCEEEEEecCCcc---hhhHHHHHHHHHcCCCEEE
Confidence 378999999997632100000001 1233333 3589999999999863 2334566777788999999
Q ss_pred EeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+||+|......+......+ .+.++. +.+++|+.+++|+++
T Consensus 118 VlNK~Dl~~~~~i~id~~~L----~~~LG~---pVvpiSA~~g~GIde 158 (772)
T PRK09554 118 ALNMLDIAEKQNIRIDIDAL----SARLGC---PVIPLVSTRGRGIEA 158 (772)
T ss_pred EEEchhhhhccCcHHHHHHH----HHHhCC---CEEEEEeecCCCHHH
Confidence 99999987543333333333 333332 347999999998775
No 65
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.51 E-value=9.7e-14 Score=127.69 Aligned_cols=105 Identities=13% Similarity=0.201 Sum_probs=64.1
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCCeEEEEeccCCC
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDDKIRVVLNKADQ 364 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~~iivVlNK~D~ 364 (547)
.+.++||||...- ......++..+|++++++|+.+...-......+..+. ..+.|+++|+||+|+
T Consensus 51 ~~~l~Dt~G~~~~-----------~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~ 119 (167)
T cd04160 51 RLKFWDLGGQESL-----------RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDL 119 (167)
T ss_pred EEEEEECCCChhh-----------HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence 7899999998531 2234556789999999999976332222333333332 247899999999998
Q ss_pred cChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 365 VDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 365 ~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.......+....+ ....+......+..+++||++|.|+++
T Consensus 120 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~g~gv~e 159 (167)
T cd04160 120 PDALSVEEIKEVF-QDKAEEIGRRDCLVLPVSALEGTGVRE 159 (167)
T ss_pred ccCCCHHHHHHHh-ccccccccCCceEEEEeeCCCCcCHHH
Confidence 6532211111111 111111222345568999999999864
No 66
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.51 E-value=4.8e-14 Score=130.70 Aligned_cols=151 Identities=21% Similarity=0.259 Sum_probs=87.9
Q ss_pred EeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhccc
Q 008954 204 LLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMS 283 (547)
Q Consensus 204 lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (547)
|+|++|||||||+|+|+|.. ..++..+.|+..... +. ..+.. +
T Consensus 1 iiG~~~~GKStll~~l~~~~---~~~~~~~~~t~~~~~----------~~-------~~~~~----~------------- 43 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK---PKVANYPFTTLEPNL----------GV-------VEVPD----G------------- 43 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC---ccccCCCceeecCcc----------eE-------EEcCC----C-------------
Confidence 58999999999999999987 344454444432110 00 00010 0
Q ss_pred ccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCC------CCHHHHHHHHHHhC-------
Q 008954 284 HPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLD------ISDEFKRVIASLRG------- 350 (547)
Q Consensus 284 ~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~------~~~~~~~ll~~l~~------- 350 (547)
..+.++||||+...... .+.+ .....+.+..+|++++++|+.+.. ..++...+...+..
T Consensus 44 ----~~~~i~DtpG~~~~~~~--~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (176)
T cd01881 44 ----ARIQVADIPGLIEGASE--GRGL--GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETIL 115 (176)
T ss_pred ----CeEEEEeccccchhhhc--CCCc--cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHH
Confidence 37899999998643211 1111 112233467899999999998742 12222223222221
Q ss_pred ---CCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 351 ---NDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 351 ---~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.+.|+++|+||+|+............. . ........+.+||..+.++.+
T Consensus 116 ~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~----~--~~~~~~~~~~~Sa~~~~gl~~ 167 (176)
T cd01881 116 GLLTAKPVIYVLNKIDLDDAEELEEELVRE----L--ALEEGAEVVPISAKTEEGLDE 167 (176)
T ss_pred HHHhhCCeEEEEEchhcCchhHHHHHHHHH----H--hcCCCCCEEEEehhhhcCHHH
Confidence 368999999999998765443322111 0 111122347899999988764
No 67
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.49 E-value=2.8e-13 Score=129.21 Aligned_cols=106 Identities=23% Similarity=0.187 Sum_probs=67.3
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCC-CeEEEEeccCCCcC
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGND-DKIRVVLNKADQVD 366 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~-~~iivVlNK~D~~~ 366 (547)
..+.|+||||... +...+...+..+|++++|+|+.++....+..+.+..+...+ .|+++|+||+|+..
T Consensus 83 ~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 83 RHVSFVDCPGHEI-----------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred cEEEEEECCChHH-----------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 4799999999632 22334455678999999999986433334344555444344 46899999999987
Q ss_pred hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 367 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 367 ~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
..+.......+...+.... ...+..+++||++|.++++
T Consensus 152 ~~~~~~~~~~i~~~~~~~~-~~~~~i~~vSA~~g~gi~~ 189 (203)
T cd01888 152 EEQALENYEQIKKFVKGTI-AENAPIIPISAQLKYNIDV 189 (203)
T ss_pred HHHHHHHHHHHHHHHhccc-cCCCcEEEEeCCCCCCHHH
Confidence 5554443333322222111 1234458999999998764
No 68
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.49 E-value=6.1e-13 Score=121.76 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=93.3
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhc
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQ 281 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (547)
|+++|.+|+|||||+|.|++.... ..+++.+.++.........
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~~~~~~~~~t~~~~~~~~~------------------------------------ 44 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-ARTSKTPGKTQLINFFNVN------------------------------------ 44 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-eeecCCCCcceeEEEEEcc------------------------------------
Confidence 899999999999999999943320 4455544443322210000
Q ss_pred ccccccccceEEcCCCCCChhhhhhhcccChHHHHHHH---hhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 282 MSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWF---AAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 282 ~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~---~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
..+.++||||+...... ......+......+ ....+++++++|... ..+....++++.+...+.|+++|
T Consensus 45 ------~~~~~~D~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~l~~~~~~vi~v 116 (170)
T cd01876 45 ------DKFRLVDLPGYGYAKVS-KEVKEKWGKLIEEYLENRENLKGVVLLIDSRH-GPTEIDLEMLDWLEELGIPFLVV 116 (170)
T ss_pred ------CeEEEecCCCccccccC-HHHHHHHHHHHHHHHHhChhhhEEEEEEEcCc-CCCHhHHHHHHHHHHcCCCEEEE
Confidence 26889999998753100 00000011122222 245678889998876 33455566777777777899999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+||+|+.+..+.......+...+.... .....+++|++.+.++.+
T Consensus 117 ~nK~D~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Sa~~~~~~~~ 161 (170)
T cd01876 117 LTKADKLKKSELAKALKEIKKELKLFE--IDPPIILFSSLKGQGIDE 161 (170)
T ss_pred EEchhcCChHHHHHHHHHHHHHHHhcc--CCCceEEEecCCCCCHHH
Confidence 999999876554443333322222112 223347999999877653
No 69
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.49 E-value=2.5e-13 Score=124.06 Aligned_cols=145 Identities=18% Similarity=0.212 Sum_probs=85.8
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
.|+++|++|+|||||+|++.+..+ ... .|+.+. ... . +. +. +.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~--~~~--~~t~~~-~~~-------------~-~~----~~-----~~--------- 43 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL--VTT--IPTVGF-NVE-------------M-LQ----LE-----KH--------- 43 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc--ccc--cCccCc-ceE-------------E-EE----eC-----Cc---------
Confidence 389999999999999999998875 222 232221 110 0 00 00 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH-hC---CCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL-RG---NDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l-~~---~~~~ii 356 (547)
..+.++||||...- ......++..+|++++++|+.+...-.+....+..+ +. .+.|++
T Consensus 44 -------~~l~i~D~~G~~~~-----------~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii 105 (160)
T cd04156 44 -------LSLTVWDVGGQEKM-----------RTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVV 105 (160)
T ss_pred -------eEEEEEECCCCHhH-----------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEE
Confidence 26899999997531 123344578999999999998732112222223222 21 478999
Q ss_pred EEeccCCCcCh---HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDT---QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~---~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+... +++..... +...........+.+||++|.|+++
T Consensus 106 lv~nK~Dl~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~ 152 (160)
T cd04156 106 LLANKQDLPGALTAEEITRRFK-----LKKYCSDRDWYVQPCSAVTGEGLAE 152 (160)
T ss_pred EEEECcccccCcCHHHHHHHcC-----CcccCCCCcEEEEecccccCCChHH
Confidence 99999998542 22221111 1111111233457899999999875
No 70
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.49 E-value=3.3e-13 Score=122.20 Aligned_cols=146 Identities=17% Similarity=0.154 Sum_probs=88.2
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhc
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQ 281 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (547)
|+++|++|||||||+|+|.|..+ .....|+++..... ...+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~-------------------------~~~~~---------- 43 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF---SEDTIPTVGFNMRK-------------------------VTKGN---------- 43 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC---CcCccCCCCcceEE-------------------------EEECC----------
Confidence 89999999999999999999874 22223333211110 00011
Q ss_pred ccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCCeEEE
Q 008954 282 MSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDDKIRV 357 (547)
Q Consensus 282 ~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~~iiv 357 (547)
..+.++||||.... ......++..+|++++++|+.+...-......+..+. ..+.|+++
T Consensus 44 ------~~~~~~D~~g~~~~-----------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii 106 (159)
T cd04159 44 ------VTLKVWDLGGQPRF-----------RSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLV 106 (159)
T ss_pred ------EEEEEEECCCCHhH-----------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEE
Confidence 26889999997431 1234556789999999999976322222223333332 14679999
Q ss_pred EeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+||+|.............+ .+... ....+..+++|++++.++.+
T Consensus 107 v~nK~D~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 107 LGNKNDLPGALSVDELIEQM--NLKSI-TDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred EEeCccccCCcCHHHHHHHh--Ccccc-cCCceEEEEEEeccCCChHH
Confidence 99999987543222222211 11111 12234568999999998864
No 71
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.49 E-value=1.7e-13 Score=127.62 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=64.6
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChH
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQ 368 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~ 368 (547)
.+.|+||||+... ......++..+|++|+|+|+.+ +.+.+....+..+...+.|+++|+||+|+....
T Consensus 68 ~~~l~Dt~G~~~~-----------~~~~~~~~~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 68 LLNLIDTPGHVDF-----------SYEVSRSLAACEGALLLVDATQ-GVEAQTLANFYLALENNLEIIPVINKIDLPSAD 135 (179)
T ss_pred EEEEEECCCChhh-----------HHHHHHHHHhcCeEEEEEECCC-CccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC
Confidence 5889999999642 2244556789999999999987 444444444545555678999999999986421
Q ss_pred HHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 369 QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 369 ~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
. ......+ .+.++.+....+.+||++|.++++
T Consensus 136 ~-~~~~~~~----~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (179)
T cd01890 136 P-ERVKQQI----EDVLGLDPSEAILVSAKTGLGVED 167 (179)
T ss_pred H-HHHHHHH----HHHhCCCcccEEEeeccCCCCHHH
Confidence 1 1111222 122222222247999999999864
No 72
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.49 E-value=2.6e-13 Score=124.03 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=84.9
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhc
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQ 281 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (547)
|+++|.+|+|||||++.|.+... ......|+.+. .... +. ..+
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~--~~~~~~~t~g~-~~~~--------------~~----~~~---------------- 44 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENA--QSQIIVPTVGF-NVES--------------FE----KGN---------------- 44 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCC--CcceecCcccc-ceEE--------------EE----ECC----------------
Confidence 89999999999999999998652 11111222221 1100 00 001
Q ss_pred ccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH------hCCCCeE
Q 008954 282 MSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL------RGNDDKI 355 (547)
Q Consensus 282 ~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l------~~~~~~i 355 (547)
..+.++||||.... ......++..+|++++++|+++...-......+..+ ...+.|+
T Consensus 45 ------~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 107 (162)
T cd04157 45 ------LSFTAFDMSGQGKY-----------RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPI 107 (162)
T ss_pred ------EEEEEEECCCCHhh-----------HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCE
Confidence 26889999998531 123445578999999999998632111112222222 2247899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+.......+....+ .+... .......+.+||++|.|+++
T Consensus 108 iiv~NK~Dl~~~~~~~~~~~~l--~~~~~-~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 108 LFFANKMDLPDALTAVKITQLL--GLENI-KDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred EEEEeCccccCCCCHHHHHHHh--CCccc-cCceEEEEEeeCCCCCchHH
Confidence 9999999987532211211111 11111 11122347899999999875
No 73
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.48 E-value=3.2e-13 Score=125.30 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=87.9
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|++|+|||||+|+|++..+ ..+ .|+.+ +.+. .. .+.+
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~--~~~--~~t~g-~~~~------------~~------~~~~------------- 57 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDI--DTI--SPTLG-FQIK------------TL------EYEG------------- 57 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC--CCc--CCccc-cceE------------EE------EECC-------------
Confidence 46799999999999999999998764 222 22222 1110 00 0001
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~ 354 (547)
..+.++||||.... ......++..+|++++|+|+.+...-.+....+..+ ...+.|
T Consensus 58 ---------~~l~l~D~~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 117 (173)
T cd04154 58 ---------YKLNIWDVGGQKTL-----------RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT 117 (173)
T ss_pred ---------EEEEEEECCCCHHH-----------HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC
Confidence 26899999997531 123444578999999999998732112222223222 224789
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+.......+ ....+ .+.+ .....+..+.+||++|.|+++
T Consensus 118 ~iiv~nK~Dl~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 118 LLILANKQDLPGALSEEE-IREAL-ELDK-ISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred EEEEEECcccccCCCHHH-HHHHh-Cccc-cCCCceEEEeccCCCCcCHHH
Confidence 999999999864321111 11111 0000 122344568999999999874
No 74
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.48 E-value=4.9e-13 Score=120.68 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=96.1
Q ss_pred EeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhccc
Q 008954 204 LLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMS 283 (547)
Q Consensus 204 lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (547)
++|++|+|||||+|+|++... ...+..+.++....... ..+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~~~------------------ 43 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEV--AIVSPVPGTTTDPVEYV-----------------WELGP------------------ 43 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccc--cccCCCCCcEECCeEEE-----------------EEecC------------------
Confidence 589999999999999999875 43444444332221100 00000
Q ss_pred ccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 284 HPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 284 ~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
...+.++||||+......... +...+..++..+|++++++|+... .......++......+.|+++|+||+|
T Consensus 44 ---~~~~~~~Dt~g~~~~~~~~~~----~~~~~~~~~~~~d~il~v~~~~~~-~~~~~~~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 ---LGPVVLIDTPGIDEAGGLGRE----REELARRVLERADLILFVVDADLR-ADEEEEKLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred ---CCcEEEEECCCCCccccchhh----HHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHhcCCeEEEEEEccc
Confidence 037999999999875322111 123456678999999999999873 343333345555567899999999999
Q ss_pred CcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 364 QVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 364 ~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+....+........ . .........+.+++||.++.++.+
T Consensus 116 ~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 116 LLPEEEEEELLELR-L--LILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred cCChhhHHHHHHHH-H--hhcccccCCceEEEeeeccCCHHH
Confidence 98765444332100 0 011122334457899999887653
No 75
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.47 E-value=3.5e-13 Score=143.98 Aligned_cols=172 Identities=22% Similarity=0.258 Sum_probs=100.6
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCC----------Ccccc----eeEEEEeCCCccccCCceeeec-CCCC
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGP----------EPTTD----RFVVVMSGPDERTIPGNTIAVH-ADLP 262 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~----------~~~T~----~~~~i~~~~~~~~~~g~~~~~~-~~~~ 262 (547)
....|+++|+.++|||||+++|+...- ..... ..+++ ....+++...+....|+++... ..+.
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g--~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTK--QIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcC--CCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 346799999999999999999997763 33221 12232 1222344444444566665221 1111
Q ss_pred CCCccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH
Q 008954 263 FSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK 342 (547)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~ 342 (547)
+.+ .++.|+||||+.. |...+...+..+|++++|+|+.. +...+..
T Consensus 104 ~~~----------------------~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~-G~~~qt~ 149 (474)
T PRK05124 104 TEK----------------------RKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARK-GVLDQTR 149 (474)
T ss_pred cCC----------------------cEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCC-Cccccch
Confidence 111 3799999999632 11222333689999999999976 4444333
Q ss_pred HHHHHHhCCC-CeEEEEeccCCCcCh--HHHHHHHHHHHHhhhhccC-CCCcEEEEecccCCCCCCCC
Q 008954 343 RVIASLRGND-DKIRVVLNKADQVDT--QQLMRVYGALMWSLGKVLN-TPEVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 343 ~ll~~l~~~~-~~iivVlNK~D~~~~--~~l~~~~~~l~~~l~~~~~-~~~v~~v~isa~~~~~l~~~ 406 (547)
+.+..+...+ .++++|+||+|+++. +.+......+..-+ +... ...+..+++||++|.++...
T Consensus 150 ~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 150 RHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFA-EQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHH-HhcCCCCCceEEEEEeecCCCcccc
Confidence 3333333333 468999999999842 22333322221111 1122 23455689999999999863
No 76
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.47 E-value=4.6e-13 Score=125.70 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=89.3
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|.+|||||||+|.+.+..+ ..+ .|+.+..... ..+.+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~--~~~--~~t~~~~~~~-------------------~~~~~------------ 60 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRL--AQH--QPTQHPTSEE-------------------LAIGN------------ 60 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCC--ccc--CCccccceEE-------------------EEECC------------
Confidence 347799999999999999999998764 322 2222111000 00011
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~ 353 (547)
..+.++||||..... .....+...+|++++|+|+++...-.+....+..+. ..+.
T Consensus 61 ----------~~~~~~D~~G~~~~~-----------~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~ 119 (184)
T smart00178 61 ----------IKFTTFDLGGHQQAR-----------RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATV 119 (184)
T ss_pred ----------EEEEEEECCCCHHHH-----------HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCC
Confidence 268899999985321 123445789999999999987432222222333332 2478
Q ss_pred eEEEEeccCCCc---ChHHHHHHHHHHHHhhhhcc------CCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQV---DTQQLMRVYGALMWSLGKVL------NTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~---~~~~l~~~~~~l~~~l~~~~------~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+. +.+++....+ +.... .......+++||+++.|+++
T Consensus 120 piliv~NK~Dl~~~~~~~~i~~~l~-----l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 175 (184)
T smart00178 120 PFLILGNKIDAPYAASEDELRYALG-----LTNTTGSKGKVGVRPLEVFMCSVVRRMGYGE 175 (184)
T ss_pred CEEEEEeCccccCCCCHHHHHHHcC-----CCcccccccccCCceeEEEEeecccCCChHH
Confidence 999999999985 3344433221 11110 11233458999999999875
No 77
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.47 E-value=6.2e-13 Score=121.19 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=88.0
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||+|++++... .... ++. ..... . ..+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~~~--~t~-~~~~~------------~------~~~~~--------------- 42 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VTTI--PTI-GFNVE------------T------VEYKN--------------- 42 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CCCC--CCc-CcceE------------E------EEECC---------------
Confidence 389999999999999999998873 2211 111 11110 0 00001
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~ii 356 (547)
..+.++||||...- ......++..+|++++++|+.+...-......+..+ ...+.|++
T Consensus 43 -------~~~~i~D~~G~~~~-----------~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii 104 (158)
T cd00878 43 -------VSFTVWDVGGQDKI-----------RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLL 104 (158)
T ss_pred -------EEEEEEECCCChhh-----------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE
Confidence 27899999997531 123455678999999999998742222222333322 23478999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhc-cCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKV-LNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~-~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.......++...+ +.. .....+..+.+||++|.|+.+
T Consensus 105 iv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gv~~ 150 (158)
T cd00878 105 IFANKQDLPGALSVSELIEKL----GLEKILGRRWHIQPCSAVTGDGLDE 150 (158)
T ss_pred EEeeccCCccccCHHHHHHhh----ChhhccCCcEEEEEeeCCCCCCHHH
Confidence 999999997643222222221 111 112234567899999998764
No 78
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.47 E-value=4.5e-13 Score=146.53 Aligned_cols=153 Identities=21% Similarity=0.207 Sum_probs=96.2
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeec-CCCCCCCccccccchhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVH-ADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.|+++|+.|+|||||+|+|+|......+.... +|++..+. ..+.+.+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~------------------rGiTid~~~~~~~~~~-------------- 49 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKK------------------RGMTIDLGFAYFPLPD-------------- 49 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhc------------------CCceEEeEEEEEEeCC--------------
Confidence 58999999999999999999865200111111 12221100 0011111
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EEEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IRVV 358 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-iivV 358 (547)
..+.|+||||+.. |.......+..+|++++|+|+.+ +...+..+.+..+...+.| +++|
T Consensus 50 --------~~v~~iDtPGhe~-----------f~~~~~~g~~~aD~aILVVDa~~-G~~~qT~ehl~il~~lgi~~iIVV 109 (581)
T TIGR00475 50 --------YRLGFIDVPGHEK-----------FISNAIAGGGGIDAALLVVDADE-GVMTQTGEHLAVLDLLGIPHTIVV 109 (581)
T ss_pred --------EEEEEEECCCHHH-----------HHHHHHhhhccCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEE
Confidence 2789999999742 22234445789999999999987 5556666666666666788 9999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+||+|+++.+.+......+...+.........+.+++||++|.|+++
T Consensus 110 lNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~e 156 (581)
T TIGR00475 110 ITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGE 156 (581)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchh
Confidence 99999987654433333222112221111134568999999999875
No 79
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.46 E-value=3.9e-13 Score=121.64 Aligned_cols=147 Identities=16% Similarity=0.205 Sum_probs=89.6
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|.|.+... .....++++....... . . ..+ ..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~---~~~~~~t~~~~~~~~~-----------~--~----~~~----~~--------- 48 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKF---DENYKSTIGVDFKSKT-----------I--E----IDG----KT--------- 48 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC---CCccCCceeeeeEEEE-----------E--E----ECC----EE---------
Confidence 599999999999999999999885 2222233222111000 0 0 000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~~iiv 357 (547)
..+.++||||... +......++.++|++++++|+.+...-.....++..+.. .+.|+++
T Consensus 49 -------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 110 (159)
T cd00154 49 -------VKLQIWDTAGQER-----------FRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIIL 110 (159)
T ss_pred -------EEEEEEecCChHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 2688999999843 123456668899999999999763322333444444443 3589999
Q ss_pred EeccCCCcChHH-HHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~-l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+||+|...+.+ .......+. .. ..+..+.+||.++.++.+
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~~----~~---~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 111 VGNKIDLEDQRQVSTEEAQQFA----KE---NGLLFFETSAKTGENVEE 152 (159)
T ss_pred EEEcccccccccccHHHHHHHH----HH---cCCeEEEEecCCCCCHHH
Confidence 999999973221 222222221 11 123458999999988764
No 80
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.46 E-value=9.3e-13 Score=121.71 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=88.5
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+|||||++.|.+... . ...||++..... . . +..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~--~--~~~~t~g~~~~~-------------~--~----~~~------------- 52 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS--V--TTIPTVGFNVET-------------V--T----YKN------------- 52 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC--c--cccCCcccceEE-------------E--E----ECC-------------
Confidence 46799999999999999999987653 2 223333321110 0 0 001
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh-C---CCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR-G---NDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~-~---~~~~ 354 (547)
..+.++||||.... ......+..++|++++|+|+++...-++..+.+..+. . .+.|
T Consensus 53 ---------~~~~l~Dt~G~~~~-----------~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p 112 (168)
T cd04149 53 ---------VKFNVWDVGGQDKI-----------RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL 112 (168)
T ss_pred ---------EEEEEEECCCCHHH-----------HHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc
Confidence 26899999998531 1234456789999999999987432233333333332 2 3579
Q ss_pred EEEEeccCCCcC---hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVD---TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~---~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+.. .+++....+ +... .......+++||++|.|+.+
T Consensus 113 iilv~NK~Dl~~~~~~~~i~~~~~-----~~~~-~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 113 LLVFANKQDLPDAMKPHEIQEKLG-----LTRI-RDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEEEEECcCCccCCCHHHHHHHcC-----CCcc-CCCcEEEEEeeCCCCCChHH
Confidence 999999999863 223222110 1111 11223457899999999864
No 81
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.46 E-value=2.8e-13 Score=124.66 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=87.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||+|.+++..+ .....|++....... .. +.. +.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~~--------------~~----~~~----~~-------- 48 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF---RESYIPTIEDTYRQV--------------IS----CSK----NI-------- 48 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---CCCcCCcchheEEEE--------------EE----ECC----EE--------
Confidence 4699999999999999999998774 122223322111100 00 000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC------CCC
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG------NDD 353 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~------~~~ 353 (547)
..+.++||||...- ..........+|++++++|..+...-+....++..+.. .+.
T Consensus 49 --------~~l~i~Dt~G~~~~-----------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 109 (165)
T cd04140 49 --------CTLQITDTTGSHQF-----------PAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKI 109 (165)
T ss_pred --------EEEEEEECCCCCcc-----------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 26889999998531 22344556899999999998763322333444433322 367
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|.||+|+....++....... ..... .+..+.+||++|.++.+
T Consensus 110 piilv~nK~Dl~~~~~v~~~~~~~---~~~~~---~~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 110 PIMLVGNKCDESHKREVSSNEGAA---CATEW---NCAFMETSAKTNHNVQE 155 (165)
T ss_pred CEEEEEECccccccCeecHHHHHH---HHHHh---CCcEEEeecCCCCCHHH
Confidence 999999999996532221111110 11111 12347899999998875
No 82
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.46 E-value=7.3e-13 Score=123.10 Aligned_cols=147 Identities=17% Similarity=0.148 Sum_probs=86.4
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||++.|++..+ ... .|+.+..... . .+..
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~--~~~--~~t~~~~~~~-------------~------~~~~-------------- 58 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEV--VHT--SPTIGSNVEE-------------I------VYKN-------------- 58 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--CCc--CCccccceEE-------------E------EECC--------------
Confidence 5799999999999999999987664 222 2222211100 0 0001
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH-hC---CCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL-RG---NDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l-~~---~~~~i 355 (547)
..+.++||||...- .......+..+|++++|+|+++........+.+..+ .. .+.|+
T Consensus 59 --------~~~~l~D~~G~~~~-----------~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~ 119 (174)
T cd04153 59 --------IRFLMWDIGGQESL-----------RSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVL 119 (174)
T ss_pred --------eEEEEEECCCCHHH-----------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCE
Confidence 27899999998531 122344568999999999998632212222223322 22 35899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+.......+....+. +.. .....+..+++||++|.|+++
T Consensus 120 viv~NK~Dl~~~~~~~~i~~~l~--~~~-~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 120 LVLANKQDLKGAMTPAEISESLG--LTS-IRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEEEECCCCCCCCCHHHHHHHhC--ccc-ccCCceEEEecccCCCCCHHH
Confidence 99999999864211111111110 001 111233457899999999875
No 83
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.46 E-value=5.7e-13 Score=121.59 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=85.3
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||++.|..... .. ..|+.+ ..+. .. .+.+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~--~~--~~~t~~-~~~~------------~~------~~~~--------------- 42 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV--VT--TIPTIG-FNVE------------TV------TYKN--------------- 42 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC--cC--cCCccC-cCeE------------EE------EECC---------------
Confidence 389999999999999999977664 21 122221 1100 00 0011
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHH-HHhC---CCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIA-SLRG---NDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~-~l~~---~~~~ii 356 (547)
..+.++||||.... ....+.++..+|++|+++|+++........+.+. .+.. .+.|++
T Consensus 43 -------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii 104 (158)
T cd04151 43 -------LKFQVWDLGGQTSI-----------RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLL 104 (158)
T ss_pred -------EEEEEEECCCCHHH-----------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEE
Confidence 26899999998631 2244556789999999999876321111122222 2222 368999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhh-ccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGK-VLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~-~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+.......+....+ +. .........+++||++|.|+++
T Consensus 105 iv~nK~Dl~~~~~~~~i~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~ 150 (158)
T cd04151 105 VFANKQDMPGALSEAEISEKL----GLSELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred EEEeCCCCCCCCCHHHHHHHh----CccccCCCcEEEEEeeccCCCCHHH
Confidence 999999987432111111111 11 1111123468999999999875
No 84
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.45 E-value=5.5e-13 Score=140.29 Aligned_cols=169 Identities=20% Similarity=0.234 Sum_probs=101.9
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCC----------ccc----ceeEEEEeCCCccccCCceeeec-CCCCCCC
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPE----------PTT----DRFVVVMSGPDERTIPGNTIAVH-ADLPFSG 265 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~----------~~T----~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~ 265 (547)
.|+++|+.++|||||+++|+...- ...... .++ .....+++...+....|.++... ..+.+.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g--~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~ 79 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTK--QIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK 79 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcC--CcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC
Confidence 589999999999999999997653 222110 122 12233444444445566665221 1111111
Q ss_pred ccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHH
Q 008954 266 LTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVI 345 (547)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll 345 (547)
.++.|+||||+.. |...+...+..+|++|+|+|+.. +...+..+.+
T Consensus 80 ----------------------~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~-G~~~qt~~~~ 125 (406)
T TIGR02034 80 ----------------------RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARK-GVLEQTRRHS 125 (406)
T ss_pred ----------------------eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCccccHHHH
Confidence 3789999999742 22223345789999999999986 5555555555
Q ss_pred HHHhCCCC-eEEEEeccCCCcCh-HH-HHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCCC
Q 008954 346 ASLRGNDD-KIRVVLNKADQVDT-QQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 346 ~~l~~~~~-~iivVlNK~D~~~~-~~-l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~~ 406 (547)
..+...+. ++++++||+|+++. ++ +......+ ..+.+...+..+..+++||++|.++...
T Consensus 126 ~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 126 YIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDY-LAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHcCCCcEEEEEEecccccchHHHHHHHHHHH-HHHHHHcCCCCccEEEeecccCCCCccc
Confidence 55544444 58889999999853 22 22222221 1111223344556689999999999863
No 85
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.45 E-value=3.9e-13 Score=122.81 Aligned_cols=147 Identities=19% Similarity=0.233 Sum_probs=89.7
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|.|++..+ ..+..|+++....... ..+.+ ..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~----~~--------- 48 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF---DNQYQATIGIDFLSKT-----------------MYLED----KT--------- 48 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CccCCCceeeeEEEEE-----------------EEECC----EE---------
Confidence 589999999999999999999885 3344454443222100 00000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh-C--CCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR-G--NDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~-~--~~~~iiv 357 (547)
..+.++||||... +......++..+|++++++|.++...-.....++..+. . .+.|+++
T Consensus 49 -------~~l~~~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iil 110 (161)
T cd01861 49 -------VRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVL 110 (161)
T ss_pred -------EEEEEEECCCcHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 1588999999632 12244556799999999999976322233334444432 2 2489999
Q ss_pred EeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+....+. .+....+ .+.. .+..+.+||.++.++++
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 111 VGNKTDLSDKRQVSTEEGEKK----AKEL---NAMFIETSAKAGHNVKE 152 (161)
T ss_pred EEEChhccccCccCHHHHHHH----HHHh---CCEEEEEeCCCCCCHHH
Confidence 9999999543211 1111111 1111 24457899999998864
No 86
>PLN03127 Elongation factor Tu; Provisional
Probab=99.45 E-value=6.4e-13 Score=140.69 Aligned_cols=161 Identities=22% Similarity=0.203 Sum_probs=98.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+++|+.++|||||+++|++.. ...+... ... ...++...+...+|+++.. ...+...+
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~---~~~g~~~-~~~-~~~~D~~~~E~~rGiTi~~~~~~~~~~~------------- 123 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVL---AEEGKAK-AVA-FDEIDKAPEEKARGITIATAHVEYETAK------------- 123 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHH---HHhhccc-cee-eccccCChhHhhcCceeeeeEEEEcCCC-------------
Confidence 569999999999999999998653 1111110 000 0012222233456666622 11111111
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IRV 357 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-iiv 357 (547)
.++.|+||||+.. |...+.+.+..+|++++|+|+.+ +...++.+++..+...+.| +++
T Consensus 124 ---------~~i~~iDtPGh~~-----------f~~~~~~g~~~aD~allVVda~~-g~~~qt~e~l~~~~~~gip~iIv 182 (447)
T PLN03127 124 ---------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVV 182 (447)
T ss_pred ---------eEEEEEECCCccc-----------hHHHHHHHHhhCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEE
Confidence 3789999999963 22233344567999999999987 6677888888888888888 578
Q ss_pred EeccCCCcChHHHHHHHH-HHHHhhhhccCC--CCcEEEEecccCC
Q 008954 358 VLNKADQVDTQQLMRVYG-ALMWSLGKVLNT--PEVVRVYIGSFND 400 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~-~l~~~l~~~~~~--~~v~~v~isa~~~ 400 (547)
++||+|+++.+++.+... .+...+ ..+.+ ..++.+++|++.+
T Consensus 183 viNKiDlv~~~~~~~~i~~~i~~~l-~~~~~~~~~vpiip~Sa~sa 227 (447)
T PLN03127 183 FLNKVDVVDDEELLELVEMELRELL-SFYKFPGDEIPIIRGSALSA 227 (447)
T ss_pred EEEeeccCCHHHHHHHHHHHHHHHH-HHhCCCCCcceEEEecccee
Confidence 999999987554433332 221112 22222 2466678887643
No 87
>PRK12736 elongation factor Tu; Reviewed
Probab=99.45 E-value=1.1e-12 Score=137.47 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=99.3
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|+.++|||||+++|++... ..+.. .......++...+....|+++..- ...|.. ++
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~---~~g~~--~~~~~~~~d~~~~E~~rg~T~~~~-~~~~~~----~~------- 74 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLA---ERGLN--QAKDYDSIDAAPEEKERGITINTA-HVEYET----EK------- 74 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhh---hhccc--cccchhhhcCCHHHHhcCccEEEE-eeEecC----CC-------
Confidence 35699999999999999999997541 11110 000000122222333456665221 011110 11
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IRV 357 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-iiv 357 (547)
.++.|+||||+.. |...+...+..+|++++|+|+.+ +...+..+++..+...+.| +++
T Consensus 75 ---------~~i~~iDtPGh~~-----------f~~~~~~~~~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~g~~~~Iv 133 (394)
T PRK12736 75 ---------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLARQVGVPYLVV 133 (394)
T ss_pred ---------cEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCEEEE
Confidence 3789999999642 22233444678999999999987 6677778888888777888 678
Q ss_pred EeccCCCcChHHHHHHH-HHHHHhhhhcc-CCCCcEEEEecccCCC
Q 008954 358 VLNKADQVDTQQLMRVY-GALMWSLGKVL-NTPEVVRVYIGSFNDK 401 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~-~~l~~~l~~~~-~~~~v~~v~isa~~~~ 401 (547)
++||+|+++.+++.+.. ..+...+.... ....++.+++||++|.
T Consensus 134 viNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 134 FLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred EEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 99999998655443322 22222222211 1123566899999984
No 88
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.44 E-value=3.8e-13 Score=120.40 Aligned_cols=134 Identities=17% Similarity=0.197 Sum_probs=78.8
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|+|++... . . +.|.....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~---~-~~t~~~~~---------------------------------------- 35 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--L---Y-KKTQAVEY---------------------------------------- 35 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--c---c-ccceeEEE----------------------------------------
Confidence 589999999999999999998763 1 1 11111000
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEec
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLN 360 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlN 360 (547)
.-.++||||........ +.... ..+.++|++++|+|+.+.... ....++..+ ..|+++|+|
T Consensus 36 --------~~~~iDt~G~~~~~~~~------~~~~~-~~~~~ad~vilv~d~~~~~s~-~~~~~~~~~---~~p~ilv~N 96 (142)
T TIGR02528 36 --------NDGAIDTPGEYVENRRL------YSALI-VTAADADVIALVQSATDPESR-FPPGFASIF---VKPVIGLVT 96 (142)
T ss_pred --------cCeeecCchhhhhhHHH------HHHHH-HHhhcCCEEEEEecCCCCCcC-CChhHHHhc---cCCeEEEEE
Confidence 12579999974211110 11122 247899999999999773322 112333322 359999999
Q ss_pred cCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 361 KADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 361 K~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+|+.......+....+. +..... ..+++||+++.++++
T Consensus 97 K~Dl~~~~~~~~~~~~~~----~~~~~~--~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 97 KIDLAEADVDIERAKELL----ETAGAE--PIFEISSVDEQGLEA 135 (142)
T ss_pred eeccCCcccCHHHHHHHH----HHcCCC--cEEEEecCCCCCHHH
Confidence 999875321111111111 111221 347899999998764
No 89
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.44 E-value=3.6e-13 Score=130.41 Aligned_cols=155 Identities=21% Similarity=0.337 Sum_probs=101.1
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
.-.-|++||-||||||||+|+|.... ..++..+.||-.--+ |...+++.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AK---pkVa~YaFTTL~P~i-----------------------G~v~yddf----- 243 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAK---PKVAHYAFTTLRPHI-----------------------GTVNYDDF----- 243 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccC---Ccccccceeeecccc-----------------------ceeecccc-----
Confidence 33558999999999999999999988 788888877632111 11111110
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCC---CCCHHHHHHHHHHhC----
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKL---DISDEFKRVIASLRG---- 350 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~---~~~~~~~~ll~~l~~---- 350 (547)
.++++-|.||+..+.. ..+++.+. -..-+++|+.++||+|.+.. ...++...++..+..
T Consensus 244 ----------~q~tVADiPGiI~GAh--~nkGlG~~--FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~ 309 (366)
T KOG1489|consen 244 ----------SQITVADIPGIIEGAH--MNKGLGYK--FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKG 309 (366)
T ss_pred ----------ceeEeccCcccccccc--ccCcccHH--HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhh
Confidence 3699999999998743 23443321 12337999999999998764 334444455555532
Q ss_pred -CCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 351 -NDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 351 -~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
..+|.++|+||+|..+.++ ..+.++ .+.+..+.| +++||+.++++..
T Consensus 310 L~~rp~liVaNKiD~~eae~--~~l~~L----~~~lq~~~V--~pvsA~~~egl~~ 357 (366)
T KOG1489|consen 310 LADRPALIVANKIDLPEAEK--NLLSSL----AKRLQNPHV--VPVSAKSGEGLEE 357 (366)
T ss_pred hccCceEEEEeccCchhHHH--HHHHHH----HHHcCCCcE--EEeeeccccchHH
Confidence 2678999999999964322 112333 233333334 7999999988754
No 90
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.44 E-value=9e-13 Score=122.04 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=87.2
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|++|+|||||+|+|.|... .... |+.+ ..+. .++ +.+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~--~~~~--~t~g-~~~~--------------~i~----~~~------------- 57 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDI--SHIT--PTQG-FNIK--------------TVQ----SDG------------- 57 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCC--cccC--CCCC-cceE--------------EEE----ECC-------------
Confidence 46799999999999999999999764 2222 2211 1100 000 011
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~ 354 (547)
..+.++||||.... .......+..+|++++++|+.+...-......+..+ ...+.|
T Consensus 58 ---------~~~~~~D~~G~~~~-----------~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p 117 (173)
T cd04155 58 ---------FKLNVWDIGGQRAI-----------RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP 117 (173)
T ss_pred ---------EEEEEEECCCCHHH-----------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC
Confidence 26889999997431 122334468999999999997632112212222222 234689
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++++||+|+....+.......+ .+.... ......+.+||++|.|+++
T Consensus 118 ~ivv~nK~D~~~~~~~~~i~~~l--~~~~~~-~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 118 VLVFANKQDLATAAPAEEIAEAL--NLHDLR-DRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred EEEEEECCCCccCCCHHHHHHHc--CCcccC-CCeEEEEEeECCCCCCHHH
Confidence 99999999987543222222221 111111 1122346899999999874
No 91
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.44 E-value=6.3e-13 Score=121.22 Aligned_cols=147 Identities=14% Similarity=0.182 Sum_probs=86.2
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||+|++++..+ . ....|+++..... .. .+.+ .
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~-~~~~~t~~~~~~~------------~~------~~~~-----~-------- 47 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--V-DEYDPTIEDSYRK------------QV------VIDG-----E-------- 47 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--c-CCcCCcchheEEE------------EE------EECC-----E--------
Confidence 4699999999999999999998774 1 2222333221110 00 0000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~~i 355 (547)
...+.++||||... +......++..+|.+++++|..+...-.....++..+. ..+.|+
T Consensus 48 -------~~~~~i~Dt~G~~~-----------~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pi 109 (162)
T cd04138 48 -------TCLLDILDTAGQEE-----------YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPM 109 (162)
T ss_pred -------EEEEEEEECCCCcc-----------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 02577899999743 12244556789999999998875221122222232222 347899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+............+ .+.. ....+.+||++|.|+++
T Consensus 110 ivv~nK~Dl~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 110 VLVGNKCDLAARTVSSRQGQDL----AKSY---GIPYIETSAKTRQGVEE 152 (162)
T ss_pred EEEEECcccccceecHHHHHHH----HHHh---CCeEEEecCCCCCCHHH
Confidence 9999999987532111111111 1111 22457899999999875
No 92
>PLN03126 Elongation factor Tu; Provisional
Probab=99.44 E-value=9.1e-13 Score=140.27 Aligned_cols=165 Identities=19% Similarity=0.175 Sum_probs=103.7
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+++|+.++|||||+++|++... ...+..+.... .++...+....|+++.. ...+.+.+
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~--~i~~~~~~~~~---~~D~~~~Er~rGiTi~~~~~~~~~~~------------- 143 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALA--SMGGSAPKKYD---EIDAAPEERARGITINTATVEYETEN------------- 143 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhh--hhccccccccc---cccCChhHHhCCeeEEEEEEEEecCC-------------
Confidence 5699999999999999999997652 22222111111 12222233345555421 11111111
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IRV 357 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-iiv 357 (547)
..++|+||||+.. |...+...+..+|++++|+|+.+ +...+..+++..+...+.| +++
T Consensus 144 ---------~~i~liDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~-G~~~qt~e~~~~~~~~gi~~iIv 202 (478)
T PLN03126 144 ---------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSGAD-GPMPQTKEHILLAKQVGVPNMVV 202 (478)
T ss_pred ---------cEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEE
Confidence 3789999999853 22234445679999999999987 6777778888888878888 778
Q ss_pred EeccCCCcChHHHHHHHH-HHHHhhhhc-cCCCCcEEEEecccCCCCC
Q 008954 358 VLNKADQVDTQQLMRVYG-ALMWSLGKV-LNTPEVVRVYIGSFNDKPI 403 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~-~l~~~l~~~-~~~~~v~~v~isa~~~~~l 403 (547)
++||+|+++.++..+.+. .+...+... +....++.+++|++.+.++
T Consensus 203 vvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 203 FLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred EEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 999999987554433222 332223221 1223577789999998654
No 93
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.44 E-value=1.3e-12 Score=123.96 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=88.8
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+|+|.+|||||||+|.+++..+ .. ...|+++...... . ..+.+ .
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f--~~-~~~pt~~~~~~~~-----------~------i~~~~-----~--------- 47 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF--PE-EYIPTEHRRLYRP-----------A------VVLSG-----R--------- 47 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC--Cc-ccCCcccccccee-----------E------EEECC-----E---------
Confidence 589999999999999999998875 22 2345554211100 0 00001 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh------CCCCe
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR------GNDDK 354 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~------~~~~~ 354 (547)
...+.|+||||..... .... -++.......+..+|++|+++|..+...-+....+++.+. ..+.|
T Consensus 48 ------~~~l~i~Dt~G~~~~~-~~~~--~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p 118 (198)
T cd04142 48 ------VYDLHILDVPNMQRYP-GTAG--QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP 118 (198)
T ss_pred ------EEEEEEEeCCCcccCC-ccch--hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 0257899999975321 0000 0111223344689999999999987332222333333332 24689
Q ss_pred EEEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+........ ..+.+. .+.. .+..+.+||++|.++++
T Consensus 119 iiivgNK~Dl~~~~~~~~~~~~~~~---~~~~---~~~~~e~Sak~g~~v~~ 164 (198)
T cd04142 119 IVVVGNKRDQQRHRFAPRHVLSVLV---RKSW---KCGYLECSAKYNWHILL 164 (198)
T ss_pred EEEEEECccccccccccHHHHHHHH---HHhc---CCcEEEecCCCCCCHHH
Confidence 999999999964321111 111110 1111 23447999999999875
No 94
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.44 E-value=7e-13 Score=121.29 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=87.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|||||||+|.+++..+ . ....|++...... ... +.+ .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~-~~~~~t~~~~~~~------------~~~------~~~-----~-------- 47 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--V-EKYDPTIEDSYRK------------QIE------VDG-----Q-------- 47 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--C-cccCCchhhhEEE------------EEE------ECC-----E--------
Confidence 4799999999999999999998764 1 1222333211110 000 000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~~i 355 (547)
...+.|+||||... +......+...+|++++++|..+...-+....++..+. ..+.|+
T Consensus 48 -------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 109 (163)
T cd04136 48 -------QCMLEILDTAGTEQ-----------FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPM 109 (163)
T ss_pred -------EEEEEEEECCCccc-----------cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 02578999999743 12234556789999999999876332233333333332 236899
Q ss_pred EEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+....++.. ....+ .+... .+.+.+||++|.++.+
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 110 VLVGNKCDLEDERVVSREEGQAL----ARQWG---CPFYETSAKSKINVDE 153 (163)
T ss_pred EEEEECccccccceecHHHHHHH----HHHcC---CeEEEecCCCCCCHHH
Confidence 99999999865322211 11111 12122 3457999999998864
No 95
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.43 E-value=5.6e-13 Score=122.06 Aligned_cols=147 Identities=14% Similarity=0.195 Sum_probs=87.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||+|.+++... .....|+++..... . . .+.+ .
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~---~~~~~~t~~~~~~~-~-----------~------~~~~-----~-------- 48 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF---VTDYDPTIEDSYTK-Q-----------C------EIDG-----Q-------- 48 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC---CcccCCCccceEEE-E-----------E------EECC-----E--------
Confidence 4799999999999999999998763 22222333221110 0 0 0000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~i 355 (547)
...+.++||||...- ......++..+|.+++++|.++...-+....++..+ ...+.|+
T Consensus 49 -------~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 110 (164)
T cd04145 49 -------WAILDILDTAGQEEF-----------SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPM 110 (164)
T ss_pred -------EEEEEEEECCCCcch-----------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 026789999997531 224555678999999999998633222233333332 2346899
Q ss_pred EEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+.....+.. ....+ .+..+ +..+.+||++|.++.+
T Consensus 111 iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 111 ILVGNKADLEHQRKVSREEGQEL----ARKLK---IPYIETSAKDRLNVDK 154 (164)
T ss_pred EEEeeCccccccceecHHHHHHH----HHHcC---CcEEEeeCCCCCCHHH
Confidence 99999999875422111 11111 11122 2347999999998875
No 96
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.43 E-value=1.2e-12 Score=119.75 Aligned_cols=146 Identities=15% Similarity=0.141 Sum_probs=87.2
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||++.+....+ . +..|+++..... . + +..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~--~--~~~pt~g~~~~~-------------~--~----~~~--------------- 43 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI--V--TTIPTIGFNVET-------------V--E----YKN--------------- 43 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--c--ccCCCCCcceEE-------------E--E----ECC---------------
Confidence 599999999999999999976553 2 223433211100 0 0 001
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh-C---CCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR-G---NDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~-~---~~~~ii 356 (547)
..+.++||||.... ......+...+|++|+++|+++...-++..+.+..+. . ...|++
T Consensus 44 -------~~~~l~D~~G~~~~-----------~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii 105 (159)
T cd04150 44 -------ISFTVWDVGGQDKI-----------RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLL 105 (159)
T ss_pred -------EEEEEEECCCCHhH-----------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEE
Confidence 26899999998431 2234556799999999999986332223333333332 1 257999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.......+....+ .+... .......+.+||++|.|+++
T Consensus 106 lv~NK~Dl~~~~~~~~i~~~~--~~~~~-~~~~~~~~~~Sak~g~gv~~ 151 (159)
T cd04150 106 VFANKQDLPNAMSAAEVTDKL--GLHSL-RNRNWYIQATCATSGDGLYE 151 (159)
T ss_pred EEEECCCCCCCCCHHHHHHHh--Ccccc-CCCCEEEEEeeCCCCCCHHH
Confidence 999999986431111222221 11111 11233446899999999875
No 97
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.43 E-value=5.3e-13 Score=122.38 Aligned_cols=146 Identities=15% Similarity=0.176 Sum_probs=86.3
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|||||||+|++++..+ .....|++...... ... +.+ .
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~---~~~~~~t~~~~~~~------------~~~------~~~-----~--------- 46 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF---VDDYDPTIEDSYRK------------QIE------IDG-----E--------- 46 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC---CcccCCchhhhEEE------------EEE------ECC-----E---------
Confidence 699999999999999999998774 22222333211110 000 000 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~ii 356 (547)
...+.++||||...- ......++..+|.+++++|..+...-+....+...+ ...+.|++
T Consensus 47 ------~~~l~i~Dt~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 109 (164)
T smart00173 47 ------VCLLDILDTAGQEEF-----------SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV 109 (164)
T ss_pred ------EEEEEEEECCCcccc-----------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 026789999997531 123445578999999999987632222222222222 23467999
Q ss_pred EEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+....... .....+ .+.. ..+.+++||+++.++++
T Consensus 110 ~v~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 110 LVGNKCDLESERVVSTEEGKEL----ARQW---GCPFLETSAKERVNVDE 152 (164)
T ss_pred EEEECccccccceEcHHHHHHH----HHHc---CCEEEEeecCCCCCHHH
Confidence 999999987532111 111111 1111 23458999999998875
No 98
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.43 E-value=1.5e-12 Score=142.86 Aligned_cols=154 Identities=20% Similarity=0.239 Sum_probs=98.0
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|+.++|||||+|+|.|.+....+... ..|++.... |..+...++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~------------------~rGiTI~l~----~~~~~~~~g--------- 50 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEK------------------KRGMTIDLG----YAYWPQPDG--------- 50 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcc------------------cCCceEEee----eEEEecCCC---------
Confidence 6899999999999999999986520011111 122222110 000000000
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EEEEe
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IRVVL 359 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-iivVl 359 (547)
..+.|+||||+.. |...+...+..+|++++|+|+.+ +..++..+.+..+...+.+ +++|+
T Consensus 51 -------~~i~~IDtPGhe~-----------fi~~m~~g~~~~D~~lLVVda~e-g~~~qT~ehl~il~~lgi~~iIVVl 111 (614)
T PRK10512 51 -------RVLGFIDVPGHEK-----------FLSNMLAGVGGIDHALLVVACDD-GVMAQTREHLAILQLTGNPMLTVAL 111 (614)
T ss_pred -------cEEEEEECCCHHH-----------HHHHHHHHhhcCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 2589999999842 22234445789999999999987 6677777777777766766 57999
Q ss_pred ccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 360 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 360 NK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
||+|+++.+.+......+...+... .+...+.+++||++|.|+++
T Consensus 112 NKiDlv~~~~~~~v~~ei~~~l~~~-~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 112 TKADRVDEARIAEVRRQVKAVLREY-GFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred ECCccCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEeCCCCCCCHH
Confidence 9999987655554444443222221 22234558999999998864
No 99
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.43 E-value=9.5e-13 Score=121.07 Aligned_cols=148 Identities=15% Similarity=0.178 Sum_probs=89.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||+|++++..+ .....|+.+....... ..+.+. .
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~---~~~~~~t~~~~~~~~~-----------------~~~~~~----~-------- 50 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY---TESYISTIGVDFKIRT-----------------IELDGK----T-------- 50 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEE-----------------EEECCE----E--------
Confidence 4699999999999999999998774 2222333332111000 000000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~~ii 356 (547)
..+.++||||... +......+...+|++++++|+++...-.+..+++..+.. .+.|++
T Consensus 51 --------~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~i 111 (166)
T cd01869 51 --------IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKL 111 (166)
T ss_pred --------EEEEEEECCCcHh-----------HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE
Confidence 2688999999642 123455667899999999999873322333334444332 467999
Q ss_pred EEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.....+. +....+ .+.. .++.+.+||++|.++.+
T Consensus 112 iv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 112 LVGNKCDLTDKRVVDYSEAQEF----ADEL---GIPFLETSAKNATNVEQ 154 (166)
T ss_pred EEEEChhcccccCCCHHHHHHH----HHHc---CCeEEEEECCCCcCHHH
Confidence 999999986432211 111111 1212 23458999999998875
No 100
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.43 E-value=8.5e-13 Score=120.65 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=80.5
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|+|.|... .. ..|..... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---~~---~~~~~v~~-----------------------~---------------- 37 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---LA---RKTQAVEF-----------------------N---------------- 37 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---cC---ccceEEEE-----------------------C----------------
Confidence 699999999999999999998762 11 11111111 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEec
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLN 360 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlN 360 (547)
...++||||........ .......+..+|++++++|+.+.. +.....++. + ..+.|+++++|
T Consensus 38 --------~~~~iDtpG~~~~~~~~-------~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~-~-~~~~~ii~v~n 99 (158)
T PRK15467 38 --------DKGDIDTPGEYFSHPRW-------YHALITTLQDVDMLIYVHGANDPE-SRLPAGLLD-I-GVSKRQIAVIS 99 (158)
T ss_pred --------CCCcccCCccccCCHHH-------HHHHHHHHhcCCEEEEEEeCCCcc-cccCHHHHh-c-cCCCCeEEEEE
Confidence 11269999986432111 112223368999999999998632 111122222 2 23678999999
Q ss_pred cCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 361 KADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 361 K~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+|+... +..... .+. .+ ... ..+.+++||++++++++
T Consensus 100 K~Dl~~~-~~~~~~-~~~---~~-~~~-~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 100 KTDMPDA-DVAATR-KLL---LE-TGF-EEPIFELNSHDPQSVQQ 137 (158)
T ss_pred ccccCcc-cHHHHH-HHH---HH-cCC-CCCEEEEECCCccCHHH
Confidence 9998642 221211 111 11 222 13457999999999875
No 101
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.43 E-value=3.3e-12 Score=119.76 Aligned_cols=149 Identities=16% Similarity=0.157 Sum_probs=87.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeE-EEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFV-VVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~-~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
.+|+++|.+|+|||||+|.+++..+ . ...|+.+-.. .+... . ....+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~--~--~~~~t~~~~~~~~~~~------------~---~~~~~------------- 51 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF--V--NTVPTKGFNTEKIKVS------------L---GNSKG------------- 51 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc--C--CcCCccccceeEEEee------------c---cCCCc-------------
Confidence 5799999999999999999998764 2 2234332111 00000 0 00001
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHH----HHHhCCCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVI----ASLRGNDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll----~~l~~~~~~ 354 (547)
..+.++||||... +......++..+|++++++|+++...-+.....+ ......+.|
T Consensus 52 ---------~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p 111 (183)
T cd04152 52 ---------ITFHFWDVGGQEK-----------LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP 111 (183)
T ss_pred ---------eEEEEEECCCcHh-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc
Confidence 2688999999742 1123445578999999999998632112222222 222335789
Q ss_pred EEEEeccCCCcCh---HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDT---QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~---~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+... +++.... .+...........+++||+++.|+++
T Consensus 112 ~iiv~NK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 112 VLVLANKQDLPNALSVSEVEKLL-----ALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEEEECcCccccCCHHHHHHHh-----CccccCCCCceEEEEeecccCCCHHH
Confidence 9999999998632 2221111 11111122223457899999999875
No 102
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.43 E-value=2.4e-12 Score=118.82 Aligned_cols=147 Identities=15% Similarity=0.205 Sum_probs=88.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce-eEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR-FVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
.+|+++|.+|+|||||+|.+++..+ ... ..++.+. +.... +. +.+ +.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~--~~~-~~~t~~~~~~~~~--------------~~----~~~----~~------- 52 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRF--QPV-HDLTIGVEFGARM--------------IT----IDG----KQ------- 52 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCC-CCCccceeEEEEE--------------EE----ECC----EE-------
Confidence 4799999999999999999998874 222 1222221 11100 00 000 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~~i 355 (547)
..+.++||||... +......+...+|++++++|+++...-.....++..+.. .+.|+
T Consensus 53 ---------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pv 112 (168)
T cd01866 53 ---------IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTI 112 (168)
T ss_pred ---------EEEEEEECCCcHH-----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 2688999999532 123455567899999999999863322333444544433 36789
Q ss_pred EEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+.....+.. ....+ .+.. ....+.+||.++.++.+
T Consensus 113 ivv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 113 MLIGNKCDLESRREVSYEEGEAF----AKEH---GLIFMETSAKTASNVEE 156 (168)
T ss_pred EEEEECcccccccCCCHHHHHHH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 99999999874321111 11111 1111 23347899999999874
No 103
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.43 E-value=1.4e-12 Score=119.61 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=86.9
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||++.+++..+ .+. ..++. ...+.... . .+.+ ..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--~~~-~~~~~-~~~~~~~~----------~------~~~~----~~--------- 48 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGY--EPQ-QLSTY-ALTLYKHN----------A------KFEG----KT--------- 48 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCC-cCCce-eeEEEEEE----------E------EECC----EE---------
Confidence 689999999999999999998775 211 11111 11110000 0 0000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCC--CCeEEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGN--DDKIRVV 358 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~--~~~iivV 358 (547)
-.+.++||||... +......++..+|++|+++|.++....+....++..+... +.|+++|
T Consensus 49 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv 110 (161)
T cd04124 49 -------ILVDFWDTAGQER-----------FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVV 110 (161)
T ss_pred -------EEEEEEeCCCchh-----------hhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 2678999999742 1234556689999999999987633223334455555432 6899999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.||+|+.... ..+.. . +.+.. ..+.+.+||++|.++.+
T Consensus 111 ~nK~Dl~~~~-~~~~~-~----~~~~~---~~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 111 ANKIDLDPSV-TQKKF-N----FAEKH---NLPLYYVSAADGTNVVK 148 (161)
T ss_pred EECccCchhH-HHHHH-H----HHHHc---CCeEEEEeCCCCCCHHH
Confidence 9999985321 11111 1 11111 23457899999998874
No 104
>PRK12735 elongation factor Tu; Reviewed
Probab=99.43 E-value=1.1e-12 Score=137.77 Aligned_cols=165 Identities=19% Similarity=0.183 Sum_probs=99.7
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCccccee--EEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRF--VVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~--~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
...|+++|+.++|||||+|+|++.. ...+. .+. ...+....+....|+++..-. ..+. .++
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~---~~~g~----~~~~~~~~~d~~~~E~~rGiT~~~~~-~~~~----~~~----- 74 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVL---AKKGG----GEAKAYDQIDNAPEEKARGITINTSH-VEYE----TAN----- 74 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhh---hhcCC----cccchhhhccCChhHHhcCceEEEee-eEEc----CCC-----
Confidence 3569999999999999999999843 11111 110 001122223335566653210 1110 011
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
.++.|+||||+.+ |...+...+..+|++++++|+.+ +...+..+++..+...+.|.+
T Consensus 75 -----------~~i~~iDtPGh~~-----------f~~~~~~~~~~aD~~llVvda~~-g~~~qt~e~l~~~~~~gi~~i 131 (396)
T PRK12735 75 -----------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYI 131 (396)
T ss_pred -----------cEEEEEECCCHHH-----------HHHHHHhhhccCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCeE
Confidence 3789999999842 22334455789999999999987 556677778877777788865
Q ss_pred -EEeccCCCcChHHHHHHHH-HHHHhhhhccCC--CCcEEEEecccCCCCCC
Q 008954 357 -VVLNKADQVDTQQLMRVYG-ALMWSLGKVLNT--PEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 357 -vVlNK~D~~~~~~l~~~~~-~l~~~l~~~~~~--~~v~~v~isa~~~~~l~ 404 (547)
+++||+|+.+.++...... .+...+.. ..+ ..++.+++|++.|.+..
T Consensus 132 ivvvNK~Dl~~~~~~~~~~~~ei~~~l~~-~~~~~~~~~ii~~Sa~~g~n~~ 182 (396)
T PRK12735 132 VVFLNKCDMVDDEELLELVEMEVRELLSK-YDFPGDDTPIIRGSALKALEGD 182 (396)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHHHHHH-cCCCcCceeEEecchhccccCC
Confidence 5799999986544322221 22111222 222 23667899999987653
No 105
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.43 E-value=6.3e-13 Score=130.38 Aligned_cols=152 Identities=22% Similarity=0.322 Sum_probs=104.0
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCcccc-ccchhhhhhhh
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTF-GGAFLSKFECS 280 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ 280 (547)
|++||-|||||||||+.+...+ ..++..|.||-.-. . |+... +.
T Consensus 162 VGLVG~PNaGKSTlls~vS~Ak---PKIadYpFTTL~Pn------------L-----------GvV~~~~~--------- 206 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAK---PKIADYPFTTLVPN------------L-----------GVVRVDGG--------- 206 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcC---CcccCCccccccCc------------c-----------cEEEecCC---------
Confidence 8899999999999999999999 88899998885322 1 11111 11
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCC---CHHHHHHHHHHhCC-----C
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDI---SDEFKRVIASLRGN-----D 352 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~---~~~~~~ll~~l~~~-----~ 352 (547)
+.+++-|.||+..+..+-..-+.+|. .-++++-++++|+|.+..+. .+....+...|..+ +
T Consensus 207 -------~sfv~ADIPGLIEGAs~G~GLG~~FL----rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~ 275 (369)
T COG0536 207 -------ESFVVADIPGLIEGASEGVGLGLRFL----RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAE 275 (369)
T ss_pred -------CcEEEecCcccccccccCCCccHHHH----HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhcc
Confidence 47999999999998655555444442 23789999999999875332 33444455556543 7
Q ss_pred CeEEEEeccCCCcC-hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQVD-TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~-~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.++|+||+|++. .+++......+ .+..... ..+|||+.+++++++
T Consensus 276 K~~ivv~NKiD~~~~~e~~~~~~~~l----~~~~~~~--~~~~ISa~t~~g~~~ 323 (369)
T COG0536 276 KPRIVVLNKIDLPLDEEELEELKKAL----AEALGWE--VFYLISALTREGLDE 323 (369)
T ss_pred CceEEEEeccCCCcCHHHHHHHHHHH----HHhcCCC--cceeeehhcccCHHH
Confidence 89999999999654 44554444443 2222222 224599999999875
No 106
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.43 E-value=2.3e-12 Score=118.24 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=86.5
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|++++..+ .....|+.+...... .. .+.+ .
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~---~~~~~~t~~~~~~~~-----------~~------~~~~-----~--------- 47 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRF---VSKYLPTIGIDYGVK-----------KV------SVRN-----K--------- 47 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCCCCCccceeEEEE-----------EE------EECC-----e---------
Confidence 699999999999999999999884 222333332111000 00 0000 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----C----CC
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----G----ND 352 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~----~~ 352 (547)
...+.++||||.... ......+...+|++|+++|.++...-+....++..+. . .+
T Consensus 48 ------~~~l~i~Dt~G~~~~-----------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 110 (168)
T cd04119 48 ------EVRVNFFDLSGHPEY-----------LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMEN 110 (168)
T ss_pred ------EEEEEEEECCccHHH-----------HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCC
Confidence 026889999998421 1234555789999999999986322222223333332 1 35
Q ss_pred CeEEEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.|+++|.||+|+...... ......+ ....+ ...+.+||+++.++.+
T Consensus 111 ~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 111 IVVVVCANKIDLTKHRAVSEDEGRLW----AESKG---FKYFETSACTGEGVNE 157 (168)
T ss_pred ceEEEEEEchhcccccccCHHHHHHH----HHHcC---CeEEEEECCCCCCHHH
Confidence 789999999998732111 1111111 11111 3347999999999875
No 107
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.42 E-value=1.1e-12 Score=121.08 Aligned_cols=141 Identities=22% Similarity=0.245 Sum_probs=83.4
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhc
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQ 281 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (547)
|+++|.+|||||||+|.+.+... ... .|+.+. ... . ..+.+
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~~~--~~~--~~t~g~-~~~------------~------~~~~~---------------- 42 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIP--KKV--APTVGF-TPT------------K------LRLDK---------------- 42 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC--ccc--cCcccc-eEE------------E------EEECC----------------
Confidence 89999999999999999998632 111 222211 110 0 00011
Q ss_pred ccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCeEEE
Q 008954 282 MSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDKIRV 357 (547)
Q Consensus 282 ~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~iiv 357 (547)
..+.++||||... +......++..+|++++|+|+++...-++....+..+.. .+.|+++
T Consensus 43 ------~~~~i~D~~G~~~-----------~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pili 105 (167)
T cd04161 43 ------YEVCIFDLGGGAN-----------FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILV 105 (167)
T ss_pred ------EEEEEEECCCcHH-----------HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEE
Confidence 2688999999742 112345567899999999999874323333444554432 3689999
Q ss_pred EeccCCCcChHHHHHHHHHHHHhhhhccC--CCCcEEEEecccCC
Q 008954 358 VLNKADQVDTQQLMRVYGALMWSLGKVLN--TPEVVRVYIGSFND 400 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~~l~~~l~~~~~--~~~v~~v~isa~~~ 400 (547)
|.||+|+.......++...+ .+..+.. ......+++||++|
T Consensus 106 v~NK~Dl~~~~~~~~i~~~~--~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 106 LANKQDKKNALLGADVIEYL--SLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred EEeCCCCcCCCCHHHHHHhc--CcccccCCCCceEEEEEeEceeC
Confidence 99999986532222222221 1112211 11234567999998
No 108
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.42 E-value=2e-12 Score=121.74 Aligned_cols=149 Identities=18% Similarity=0.117 Sum_probs=86.1
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|++|||||||+|+|.+..+ ... .|+.+ +... . ..+.+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~--~~~--~~T~~-~~~~------------~------i~~~~------------- 62 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRL--AQH--VPTLH-PTSE------------E------LTIGN------------- 62 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC--ccc--CCccC-cceE------------E------EEECC-------------
Confidence 46799999999999999999998764 222 11111 0000 0 00011
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~~ 354 (547)
..+.++||||.... ......++..+|.+++++|..+...-++....+..+. ..+.|
T Consensus 63 ---------~~~~l~D~~G~~~~-----------~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p 122 (190)
T cd00879 63 ---------IKFKTFDLGGHEQA-----------RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP 122 (190)
T ss_pred ---------EEEEEEECCCCHHH-----------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC
Confidence 26789999996431 1234556789999999999976322222223333322 24689
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhcc----------CCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVL----------NTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~----------~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+............+ . ..... .......+.+||++|+|+.+
T Consensus 123 vivv~NK~Dl~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e 181 (190)
T cd00879 123 FLILGNKIDLPGAVSEEELRQAL-G-LYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGE 181 (190)
T ss_pred EEEEEeCCCCCCCcCHHHHHHHh-C-cccccccccccccccCceeEEEEEeEecCCCChHH
Confidence 99999999986321111111111 0 00000 00123357899999999875
No 109
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.42 E-value=3.3e-12 Score=117.69 Aligned_cols=148 Identities=13% Similarity=0.127 Sum_probs=87.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||+|++++..+ .....|+.+...... ...+.+. .
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f---~~~~~~t~~~~~~~~-----------------~~~~~~~----~-------- 51 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSF---NPSFISTIGIDFKIR-----------------TIELDGK----K-------- 51 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcC---CcccccCccceEEEE-----------------EEEECCE----E--------
Confidence 5799999999999999999998874 222233332111100 0000010 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ii 356 (547)
..+.++||||...- ......++.++|++++++|..+...-.+..+++..+. ..+.|++
T Consensus 52 --------~~l~l~D~~g~~~~-----------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i 112 (167)
T cd01867 52 --------IKLQIWDTAGQERF-----------RTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERM 112 (167)
T ss_pred --------EEEEEEeCCchHHH-----------HHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE
Confidence 26889999996421 1234456789999999999876332223333343333 3467999
Q ss_pred EEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.+..+.. +....+ .+... ...+.+||.++.++.+
T Consensus 113 iv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 113 LVGNKCDMEEKRVVSKEEGEAL----ADEYG---IKFLETSAKANINVEE 155 (167)
T ss_pred EEEECcccccccCCCHHHHHHH----HHHcC---CEEEEEeCCCCCCHHH
Confidence 999999997432111 111111 12122 2348999999988875
No 110
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.42 E-value=9.1e-13 Score=121.01 Aligned_cols=148 Identities=17% Similarity=0.234 Sum_probs=88.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||+|++++..+ . ....|+++....... ..+.+ ..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~--~-~~~~~t~~~~~~~~~-----------------~~~~~-----~~------- 51 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF--N-LDSKSTIGVEFATRS-----------------IQIDG-----KT------- 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--C-CCCCCccceEEEEEE-----------------EEECC-----EE-------
Confidence 4699999999999999999998874 2 222344432111000 00000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ii 356 (547)
..+.++||||... +.......+..++++++++|.++...-....+++..+. ..+.|++
T Consensus 52 --------~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~ 112 (165)
T cd01868 52 --------IKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIM 112 (165)
T ss_pred --------EEEEEEeCCChHH-----------HHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 1578999999742 12234556789999999999976332233334444443 2358999
Q ss_pred EEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+....+. .+....+ .... .+..+.+||++|.++.+
T Consensus 113 vv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 113 LVGNKSDLRHLRAVPTEEAKAF----AEKN---GLSFIETSALDGTNVEE 155 (165)
T ss_pred EEEECccccccccCCHHHHHHH----HHHc---CCEEEEEECCCCCCHHH
Confidence 99999998643211 1111111 1111 23457999999998764
No 111
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.42 E-value=2.7e-12 Score=118.52 Aligned_cols=148 Identities=13% Similarity=0.114 Sum_probs=85.3
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|++++..+ .....++.+...... ...+.+ +.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~----~~--------- 48 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTK-----------------EVTVDD----KL--------- 48 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CcCcCCccceEEEEE-----------------EEEECC----EE---------
Confidence 699999999999999999998874 122222222111100 000001 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHH----HHHHh---CCCC
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRV----IASLR---GNDD 353 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~l----l~~l~---~~~~ 353 (547)
..+.++||||.... ......++.++|++|+++|+.+...-+....+ +..+. ..+.
T Consensus 49 -------~~~~~~D~~g~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (172)
T cd01862 49 -------VTLQIWDTAGQERF-----------QSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENF 110 (172)
T ss_pred -------EEEEEEeCCChHHH-----------HhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 25789999996421 22445567899999999998763211222222 22222 1268
Q ss_pred eEEEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+..+... ......++ +..+ .+..+++|+.+|.|+.+
T Consensus 111 p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~--~~~~~~~Sa~~~~gv~~ 157 (172)
T cd01862 111 PFVVLGNKIDLEEKRQVSTKKAQQWC----QSNG--NIPYFETSAKEAINVEQ 157 (172)
T ss_pred eEEEEEECcccccccccCHHHHHHHH----HHcC--CceEEEEECCCCCCHHH
Confidence 99999999999832111 11112221 1111 23457999999999864
No 112
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.42 E-value=5.7e-13 Score=126.37 Aligned_cols=125 Identities=18% Similarity=0.269 Sum_probs=79.9
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCC--CcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGP--EPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~--~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
.|+++|++|+|||||+|+|+|... ..++. .+.|...... ...+.+
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~--~~~~~~~~~~T~~~~~~------------------~~~~~~------------- 48 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREV--FESKLSASSVTKTCQKE------------------SAVWDG------------- 48 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCc--cccccCCCCccccccee------------------eEEECC-------------
Confidence 599999999999999999999986 43332 1222211110 000111
Q ss_pred hhcccccccccceEEcCCCCCChhh--hhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCC-----
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEK--QRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGN----- 351 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~----- 351 (547)
.++.+|||||+.+... ..+... ....+......+|++|+|+++.+ .+.++..+++.+++.
T Consensus 49 ---------~~i~viDTPG~~d~~~~~~~~~~~--i~~~~~~~~~g~~~illVi~~~~--~t~~d~~~l~~l~~~fg~~~ 115 (196)
T cd01852 49 ---------RRVNVIDTPGLFDTSVSPEQLSKE--IVRCLSLSAPGPHAFLLVVPLGR--FTEEEEQAVETLQELFGEKV 115 (196)
T ss_pred ---------eEEEEEECcCCCCccCChHHHHHH--HHHHHHhcCCCCEEEEEEEECCC--cCHHHHHHHHHHHHHhChHh
Confidence 3799999999987521 111111 11111222468899999999876 667778888777653
Q ss_pred CCeEEEEeccCCCcChHHHH
Q 008954 352 DDKIRVVLNKADQVDTQQLM 371 (547)
Q Consensus 352 ~~~iivVlNK~D~~~~~~l~ 371 (547)
-.++++|+|++|.+....+.
T Consensus 116 ~~~~ivv~T~~d~l~~~~~~ 135 (196)
T cd01852 116 LDHTIVLFTRGDDLEGGTLE 135 (196)
T ss_pred HhcEEEEEECccccCCCcHH
Confidence 25789999999988654333
No 113
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.41 E-value=8.8e-13 Score=121.21 Aligned_cols=149 Identities=12% Similarity=0.178 Sum_probs=87.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||++++.+..+ ... ..++.+....+. ...+.+. .
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~--~~~-~~~t~~~~~~~~-----------------~~~~~~~----~-------- 51 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTF--SER-QGNTIGVDFTMK-----------------TLEIEGK----R-------- 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC--ccc-CCCccceEEEEE-----------------EEEECCE----E--------
Confidence 5799999999999999999987664 211 112221111000 0000010 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ii 356 (547)
..+.++||||... +......++..+|++++++|+.+...-.....++..+. ..+.|++
T Consensus 52 --------~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i 112 (165)
T cd01864 52 --------VKLQIWDTAGQER-----------FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLL 112 (165)
T ss_pred --------EEEEEEECCChHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE
Confidence 1678999999632 22345556789999999999987332233334444443 3467899
Q ss_pred EEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+....+. ......+ .+.... ...+.+||++|.++.+
T Consensus 113 vv~nK~Dl~~~~~~~~~~~~~~----~~~~~~--~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 113 LIGNKCDLEEQREVLFEEACTL----AEKNGM--LAVLETSAKESQNVEE 156 (165)
T ss_pred EEEECcccccccccCHHHHHHH----HHHcCC--cEEEEEECCCCCCHHH
Confidence 99999998754221 1111122 222222 2347899999988764
No 114
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.41 E-value=2.7e-12 Score=117.46 Aligned_cols=148 Identities=15% Similarity=0.199 Sum_probs=88.2
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||+|+|++..+ .. ...|+++....... ..+.+ . .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~--~~-~~~~t~~~~~~~~~-----------------v~~~~---~-~-------- 49 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEF--SE-NQESTIGAAFLTQT-----------------VNLDD---T-T-------- 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CC-CCCCccceeEEEEE-----------------EEECC---E-E--------
Confidence 4699999999999999999999885 22 22333332111000 00000 0 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~~ii 356 (547)
-.+.++||||... +......++..+|++++++|+++...-.....++..+.. .+.|++
T Consensus 50 --------~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii 110 (163)
T cd01860 50 --------VKFEIWDTAGQER-----------YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIA 110 (163)
T ss_pred --------EEEEEEeCCchHH-----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 2678999999632 112344567899999999999864322333444444433 357899
Q ss_pred EEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+...... ......+. .... +..+.+||++|.++.+
T Consensus 111 vv~nK~D~~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 111 LVGNKADLESKRQVSTEEAQEYA----DENG---LLFFETSAKTGENVNE 153 (163)
T ss_pred EEEECccccccCcCCHHHHHHHH----HHcC---CEEEEEECCCCCCHHH
Confidence 99999998732110 01111111 1111 3458999999998864
No 115
>PRK00049 elongation factor Tu; Reviewed
Probab=99.41 E-value=1.5e-12 Score=136.59 Aligned_cols=165 Identities=21% Similarity=0.184 Sum_probs=100.9
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|+.++|||||+++|++.. ...+... ......++...+...+|+++.... ..|. . ++
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~---~~~g~~~--~~~~~~~d~~~~E~~rg~Ti~~~~-~~~~---~-~~------- 74 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVL---AKKGGAE--AKAYDQIDKAPEEKARGITINTAH-VEYE---T-EK------- 74 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhh---hhccCCc--ccchhhccCChHHHhcCeEEeeeE-EEEc---C-CC-------
Confidence 3569999999999999999999853 1111100 000011222223334566652210 1110 0 11
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE-E
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR-V 357 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii-v 357 (547)
.++.|+||||+.. |...+...+..+|++++++|+.+ +...++.+++..+...+.|.+ +
T Consensus 75 ---------~~i~~iDtPG~~~-----------f~~~~~~~~~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~g~p~iiV 133 (396)
T PRK00049 75 ---------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVV 133 (396)
T ss_pred ---------eEEEEEECCCHHH-----------HHHHHHhhhccCCEEEEEEECCC-CCchHHHHHHHHHHHcCCCEEEE
Confidence 3789999999842 22334455789999999999987 667777888888887888976 5
Q ss_pred EeccCCCcChHHHHH-HHHHHHHhhhhccCC--CCcEEEEecccCCCC
Q 008954 358 VLNKADQVDTQQLMR-VYGALMWSLGKVLNT--PEVVRVYIGSFNDKP 402 (547)
Q Consensus 358 VlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~--~~v~~v~isa~~~~~ 402 (547)
++||+|+++.++..+ ....+...+.. +.+ ..++.+++||+.+.+
T Consensus 134 vvNK~D~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 134 FLNKCDMVDDEELLELVEMEVRELLSK-YDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred EEeecCCcchHHHHHHHHHHHHHHHHh-cCCCccCCcEEEeecccccC
Confidence 899999986443322 22223222222 222 346668999998854
No 116
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.41 E-value=1.9e-12 Score=107.83 Aligned_cols=87 Identities=33% Similarity=0.439 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcCCC
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAGRE 88 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g~~ 88 (547)
|.+|+++...|+.+|..+|.+++|+|+.++++.+|+..+++.+++.+++..+|.+++|.|+++||+.++..+...+.|.+
T Consensus 2 ~~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~ 81 (96)
T smart00027 2 WAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYP 81 (96)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCC
Confidence 78999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCchhhc
Q 008954 89 ITSDILK 95 (547)
Q Consensus 89 ~~~~~~~ 95 (547)
+|.+++.
T Consensus 82 ~~~~~~~ 88 (96)
T smart00027 82 IPASLPP 88 (96)
T ss_pred CCccCCH
Confidence 9999987
No 117
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.41 E-value=1e-12 Score=127.84 Aligned_cols=89 Identities=27% Similarity=0.473 Sum_probs=67.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|++||.||+|||||+|.|+|.+ +.++..|.||.-.+ +|+..+..
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~---seva~y~FTTl~~V-----------------------PG~l~Y~g-------- 109 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTK---SEVADYPFTTLEPV-----------------------PGMLEYKG-------- 109 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCC---ccccccCceecccc-----------------------cceEeecC--------
Confidence 579999999999999999999999 88999888886443 23322222
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCC
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHK 334 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~ 334 (547)
.++.++|+||+..+..+...++-+ +.+.+..||+|++|+|...
T Consensus 110 --------a~IQild~Pgii~gas~g~grG~~----vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 110 --------AQIQLLDLPGIIEGASSGRGRGRQ----VLSVARNADLIIIVLDVFE 152 (365)
T ss_pred --------ceEEEEcCcccccCcccCCCCcce----eeeeeccCCEEEEEEecCC
Confidence 389999999999885554444432 3344689999999998864
No 118
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.41 E-value=3.9e-12 Score=138.35 Aligned_cols=128 Identities=23% Similarity=0.327 Sum_probs=78.6
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcc-ccee---EEEEeCCCccccCCceeeecCCCCCCCccccccchh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPT-TDRF---VVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFL 274 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~-T~~~---~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 274 (547)
.|.|+++|++|+|||||+|+|.+..+ .. .++. +|+. +.+.... ..+..-.......+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~--~e~ggiTq~iG~~~v~~~~----~~~~~~~~~~~~~v~---------- 65 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AK--REAGGITQHIGATEIPMDV----IEGICGDLLKKFKIR---------- 65 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--cc--ccCCceecccCeeEeeecc----ccccccccccccccc----------
Confidence 47899999999999999999999875 22 2222 1110 1100000 000000000000000
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK 354 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ 354 (547)
.+ ...+.|+||||+.. |.......+..+|++++|+|+.+ +...+..+.+..+...+.|
T Consensus 66 ---------~~-~~~l~~iDTpG~e~-----------f~~l~~~~~~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~~vp 123 (590)
T TIGR00491 66 ---------LK-IPGLLFIDTPGHEA-----------FTNLRKRGGALADLAILIVDINE-GFKPQTQEALNILRMYKTP 123 (590)
T ss_pred ---------cc-cCcEEEEECCCcHh-----------HHHHHHHHHhhCCEEEEEEECCc-CCCHhHHHHHHHHHHcCCC
Confidence 00 02589999999743 11233334689999999999987 5566667777777777899
Q ss_pred EEEEeccCCCcC
Q 008954 355 IRVVLNKADQVD 366 (547)
Q Consensus 355 iivVlNK~D~~~ 366 (547)
+++++||+|+..
T Consensus 124 iIVv~NK~Dl~~ 135 (590)
T TIGR00491 124 FVVAANKIDRIP 135 (590)
T ss_pred EEEEEECCCccc
Confidence 999999999973
No 119
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.41 E-value=1.6e-12 Score=119.01 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=88.3
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|.+++..+ .....++.+....... . .+.+ .
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~---~~~~~~~~~~~~~~~~-----------~------~~~~-----~--------- 47 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF---SEQYKSTIGVDFKTKT-----------I------EVDG-----K--------- 47 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEEEE-----------E------EECC-----E---------
Confidence 699999999999999999998874 2222232221111000 0 0000 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~~iiv 357 (547)
-..+.++||||... +......++..+|++++++|..++...+....++..+.. .+.|+++
T Consensus 48 ------~~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivv 110 (164)
T smart00175 48 ------RVKLQIWDTAGQER-----------FRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIML 110 (164)
T ss_pred ------EEEEEEEECCChHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 02678999999642 122455667899999999999874332333334444332 4689999
Q ss_pred EeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+....++. .....+ .+..+ ...+.+|+.++.++++
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~----~~~~~---~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 111 VGNKSDLEDQRQVSREEAEAF----AEEHG---LPFFETSAKTNTNVEE 152 (164)
T ss_pred EEEchhcccccCCCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 99999987532211 111112 12122 2348999999998764
No 120
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.41 E-value=1.9e-12 Score=119.63 Aligned_cols=147 Identities=19% Similarity=0.165 Sum_probs=86.1
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||+|++.+... . ...||++..... ..+.+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~--~~~~T~~~~~~~-------------------~~~~~--------------- 42 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--M--QPIPTIGFNVET-------------------VEYKN--------------- 42 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--C--CcCCcCceeEEE-------------------EEECC---------------
Confidence 388999999999999999998753 2 233433211110 00011
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~ii 356 (547)
..+.++||||.... ......++..+|++++++|.++...-++....+..+.. .+.|++
T Consensus 43 -------~~i~l~Dt~G~~~~-----------~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~pii 104 (169)
T cd04158 43 -------LKFTIWDVGGKHKL-----------RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLL 104 (169)
T ss_pred -------EEEEEEECCCChhc-----------chHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEE
Confidence 27899999998531 12344457899999999999874322333333433322 247899
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.......+.. .+ +.+........+..+.+||++|.|+.+
T Consensus 105 lv~NK~Dl~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 151 (169)
T cd04158 105 IFANKQDVAGALSVEEMT-EL-LSLHKLCCGRSWYIQGCDARSGMGLYE 151 (169)
T ss_pred EEEeCcCcccCCCHHHHH-HH-hCCccccCCCcEEEEeCcCCCCCCHHH
Confidence 999999986321111111 11 011111111122345789999999875
No 121
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.41 E-value=2e-12 Score=124.37 Aligned_cols=136 Identities=19% Similarity=0.233 Sum_probs=84.4
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeec-CCCCCCCccccccchhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVH-ADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.|+++|+.++|||||+++|+...- .......++++ .++........|+++... ....|..- +..
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g--~i~~~~~g~~~---~~D~~~~E~~RgiTi~~~~~~~~~~~~---~~~------- 66 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAG--IISEKLAGKAR---YMDSREDEQERGITMKSSAISLYFEYE---EED------- 66 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC--CCccccCCcee---eccCCHHHHHhccccccceEEEEEecC---ccc-------
Confidence 489999999999999999997652 22211222222 222222223344443110 00111100 000
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
....--..+.|+||||+.. |...+...+..+|.+++|+|+.. +...+...+++.+...+.|+++|+
T Consensus 67 --~~~~~~~~i~iiDTPG~~~-----------f~~~~~~~l~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~~~p~ilvi 132 (222)
T cd01885 67 --KADGNEYLINLIDSPGHVD-----------FSSEVTAALRLCDGALVVVDAVE-GVCVQTETVLRQALKERVKPVLVI 132 (222)
T ss_pred --ccCCCceEEEEECCCCccc-----------cHHHHHHHHHhcCeeEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEE
Confidence 0000013689999999974 33356666899999999999987 667777888888777788999999
Q ss_pred ccCCCc
Q 008954 360 NKADQV 365 (547)
Q Consensus 360 NK~D~~ 365 (547)
||+|+.
T Consensus 133 NKiD~~ 138 (222)
T cd01885 133 NKIDRL 138 (222)
T ss_pred ECCCcc
Confidence 999986
No 122
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.40 E-value=2.2e-12 Score=118.77 Aligned_cols=146 Identities=17% Similarity=0.205 Sum_probs=85.1
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce-eEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR-FVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
+|+++|..|||||||+|++.+..++ .. .|++.. .++. .. +.+ .+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~--~~~~~~~~~~~---------------~~----~~~----~~-------- 46 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--EN--VPRVLPEITIP---------------AD----VTP----ER-------- 46 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cc--CCCcccceEee---------------ee----ecC----Ce--------
Confidence 6899999999999999999987752 11 222211 1110 00 000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHh--CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLR--GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~--~~~~~ii 356 (547)
..+.++||||..... ...+..+..+|++++++|..+...-+... .++..++ ..+.|++
T Consensus 47 --------~~~~i~Dt~G~~~~~-----------~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pvi 107 (166)
T cd01893 47 --------VPTTIVDTSSRPQDR-----------ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPII 107 (166)
T ss_pred --------EEEEEEeCCCchhhh-----------HHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 268899999975311 12344568999999999987632222211 1223232 2368999
Q ss_pred EEeccCCCcChHHH---HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQL---MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l---~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.+..+. ......+. ....... ..+.+||+++.++++
T Consensus 108 iv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~--~~~e~Sa~~~~~v~~ 154 (166)
T cd01893 108 LVGNKSDLRDGSSQAGLEEEMLPIM---NEFREIE--TCVECSAKTLINVSE 154 (166)
T ss_pred EEEEchhcccccchhHHHHHHHHHH---HHHhccc--EEEEeccccccCHHH
Confidence 99999999754321 11111111 1111111 347899999998875
No 123
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.40 E-value=5.5e-12 Score=122.09 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=93.1
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhh
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 275 (547)
...+..|+++|++|+|||||+|.|++..-. ..++... +.++++.. .+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~-~~~~~~~--g~i~i~~~--------------------~~---------- 82 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTK-QNISDIK--GPITVVTG--------------------KK---------- 82 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhccc-Ccccccc--ccEEEEec--------------------CC----------
Confidence 456788999999999999999999986410 1111111 11111100 01
Q ss_pred hhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeE
Q 008954 276 KFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKI 355 (547)
Q Consensus 276 ~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~i 355 (547)
.++.++||||... .+...+..+|++++++|+.. +....+..++..+...+.|.
T Consensus 83 ------------~~i~~vDtPg~~~--------------~~l~~ak~aDvVllviDa~~-~~~~~~~~i~~~l~~~g~p~ 135 (225)
T cd01882 83 ------------RRLTFIECPNDIN--------------AMIDIAKVADLVLLLIDASF-GFEMETFEFLNILQVHGFPR 135 (225)
T ss_pred ------------ceEEEEeCCchHH--------------HHHHHHHhcCEEEEEEecCc-CCCHHHHHHHHHHHHcCCCe
Confidence 4789999998531 12233688999999999976 66667778888887777785
Q ss_pred -EEEeccCCCcChH-HHHHHHHHHHHhhh-hccCCCCcEEEEecccCCCCC
Q 008954 356 -RVVLNKADQVDTQ-QLMRVYGALMWSLG-KVLNTPEVVRVYIGSFNDKPI 403 (547)
Q Consensus 356 -ivVlNK~D~~~~~-~l~~~~~~l~~~l~-~~~~~~~v~~v~isa~~~~~l 403 (547)
++|+||+|++... ........+...+. +.+.+. ..+++||++.-.+
T Consensus 136 vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~--ki~~iSa~~~~~~ 184 (225)
T cd01882 136 VMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGA--KLFYLSGIVHGRY 184 (225)
T ss_pred EEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCC--cEEEEeeccCCCC
Confidence 5599999998533 33344444433222 233433 4489999976443
No 124
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.40 E-value=1.5e-12 Score=119.05 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=86.3
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|+|++..+ .. ...|+.+....... . . +.+ .
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~--~~-~~~~~~~~~~~~~~-----------~--~----~~~-----~--------- 47 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTF--DP-DLAATIGVDFKVKT-----------L--T----VDG-----K--------- 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--Cc-ccCCcccceEEEEE-----------E--E----ECC-----E---------
Confidence 689999999999999999998874 22 12222221110000 0 0 000 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~ii 356 (547)
...+.++||||.... ......++..+|++++++|..+...-+....++..+ ...+.|++
T Consensus 48 ------~~~~~l~D~~g~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~ 110 (161)
T cd01863 48 ------KVKLAIWDTAGQERF-----------RTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKM 110 (161)
T ss_pred ------EEEEEEEECCCchhh-----------hhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEE
Confidence 026889999996421 123455678999999999987632222222333323 23478899
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+............+ .+.. .+..+++||++|.|+.+
T Consensus 111 iv~nK~D~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 111 LVGNKIDKENREVTREEGLKF----ARKH---NMLFIETSAKTRDGVQQ 152 (161)
T ss_pred EEEECCcccccccCHHHHHHH----HHHc---CCEEEEEecCCCCCHHH
Confidence 999999997332111111111 1111 23458999999998874
No 125
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.40 E-value=2e-12 Score=118.91 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=72.2
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhc
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQ 281 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (547)
|+++|.+|+|||||++.+.+... .....|+.+..... + ....
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~---~~~~~pt~g~~~~~---------------i----~~~~---------------- 43 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS---LESVVPTTGFNSVA---------------I----PTQD---------------- 43 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC---cccccccCCcceEE---------------E----eeCC----------------
Confidence 78999999999999999998763 22223333321110 0 0001
Q ss_pred ccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh--CCCCeEEEEe
Q 008954 282 MSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR--GNDDKIRVVL 359 (547)
Q Consensus 282 ~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~--~~~~~iivVl 359 (547)
..+.++||||...- ......++..+|++++|+|+++...-......+..+. ..+.|+++|.
T Consensus 44 ------~~l~i~Dt~G~~~~-----------~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~ 106 (164)
T cd04162 44 ------AIMELLEIGGSQNL-----------RKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLA 106 (164)
T ss_pred ------eEEEEEECCCCcch-----------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 26899999997531 1234456799999999999987332223333344443 2478999999
Q ss_pred ccCCCcCh
Q 008954 360 NKADQVDT 367 (547)
Q Consensus 360 NK~D~~~~ 367 (547)
||+|+...
T Consensus 107 NK~Dl~~~ 114 (164)
T cd04162 107 NKQDLPAA 114 (164)
T ss_pred eCcCCcCC
Confidence 99998653
No 126
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=5e-13 Score=126.97 Aligned_cols=159 Identities=21% Similarity=0.318 Sum_probs=108.0
Q ss_pred ccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-cccCCceeeecCCCCCC
Q 008954 188 SPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-RTIPGNTIAVHADLPFS 264 (547)
Q Consensus 188 ~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-~~~~g~~~~~~~~~~~~ 264 (547)
..++.+.+++ .|.+|+|+|++|+|||||+|.+.|.. .|+.+.+.+ .|... ...+...+++|....++
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~--------~p~~G~V~~--~g~~v~~p~~~~~~vFQ~~~LlP 85 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE--------KPTSGEVLL--DGRPVTGPGPDIGYVFQEDALLP 85 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCcccCCCCCCEEEEeccCcccc
Confidence 3467777766 99999999999999999999999999 455555443 23222 22455667899999999
Q ss_pred Cccccccchhh-------hhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--e
Q 008954 265 GLTTFGGAFLS-------KFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--F 330 (547)
Q Consensus 265 ~l~~~~~~~~~-------~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~ 330 (547)
+.+..+|..+. +.+........++.+.+-+ -|.-+|| ++||+. ++|+++.++++++++ |
T Consensus 86 W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVa-------iARAL~~~P~lLLlDEPF 158 (248)
T COG1116 86 WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVA-------IARALATRPKLLLLDEPF 158 (248)
T ss_pred hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHH-------HHHHHhcCCCEEEEcCCc
Confidence 99998887422 1222234445555555555 5666665 677765 899999999999999 7
Q ss_pred cCCCCCCCHHHHH-HHHHHhCCCCeEEEEeccCC
Q 008954 331 DPHKLDISDEFKR-VIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 331 d~~~~~~~~~~~~-ll~~l~~~~~~iivVlNK~D 363 (547)
.+.|.-......+ +++.+.+.+..+++|-+-+|
T Consensus 159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 159 GALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 7766222223333 33444566778888866544
No 127
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.40 E-value=2.1e-12 Score=124.92 Aligned_cols=160 Identities=16% Similarity=0.257 Sum_probs=93.8
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccch--hh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAF--LS 275 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~--~~ 275 (547)
.-|.|+++|++|+||||++|+|+|..+ .+.+....|.+.+.+.-....... ...+... ...+ ..+.... +.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~--~~~~~g~~t~~p~~i~l~~~~~~~-~~~~~~~-~~~~---~~~~~v~~~i~ 97 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDF--LPRGSGIVTRRPLILQLINSSTEY-AEFLHCK-GKKF---TDFDEVRNEIE 97 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCc--cccCCCcccccceEEEccCCCCcc-eEEEecC-Cccc---CCHHHHHHHHH
Confidence 347899999999999999999999875 555555555554444221111100 0000000 0000 0111100 00
Q ss_pred h---------------hhhhcccccccccceEEcCCCCCCh----hhhhhhcccChHHHHHHHhh-cCCeEEEEecCCCC
Q 008954 276 K---------------FECSQMSHPLLDQVTFVDTPGVLSG----EKQRTQRTYDFTGVISWFAA-KCDLILLLFDPHKL 335 (547)
Q Consensus 276 ~---------------~~~~~~~~~ll~~l~lvDTPG~~~~----~~~~~~~~~~~~~~~~~~~~-~aD~illv~d~~~~ 335 (547)
. .-......|-...++|+||||+... +.+.... ...+.+..++. ..++||+|+|+..
T Consensus 98 ~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~--~i~~lv~~yi~~~~~IIL~Vvda~~- 174 (240)
T smart00053 98 AETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEE--QIKDMIKQFISKEECLILAVTPANV- 174 (240)
T ss_pred HHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHH--HHHHHHHHHHhCccCeEEEEEECCC-
Confidence 0 0011222344468999999999742 1111111 12345666777 4569999999875
Q ss_pred CCCHHH-HHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 336 DISDEF-KRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 336 ~~~~~~-~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
++..++ .++.+.+...+.++++|+||+|..++
T Consensus 175 d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 175 DLANSDALKLAKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred CCCchhHHHHHHHHHHcCCcEEEEEECCCCCCc
Confidence 555544 68888888889999999999999864
No 128
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.39 E-value=5.4e-12 Score=137.47 Aligned_cols=153 Identities=17% Similarity=0.279 Sum_probs=96.3
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..|.|+++|+.|+|||||+|+|.+..+ . .+..+++|..... . ...+.+ .
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v--~-~~e~~GIT~~ig~------------~-----~v~~~~-----~------ 134 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKV--A-QGEAGGITQHIGA------------Y-----HVENED-----G------ 134 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc--c-cccCCceeecceE------------E-----EEEECC-----C------
Confidence 558999999999999999999998775 2 1211222211100 0 000000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
..++|+||||+..-. ......+..+|++++|+|+.+ +...+..+.+..+...+.|+++
T Consensus 135 ----------~~i~~iDTPGhe~F~-----------~~r~rga~~aDiaILVVda~d-gv~~qT~e~i~~~~~~~vPiIV 192 (587)
T TIGR00487 135 ----------KMITFLDTPGHEAFT-----------SMRARGAKVTDIVVLVVAADD-GVMPQTIEAISHAKAANVPIIV 192 (587)
T ss_pred ----------cEEEEEECCCCcchh-----------hHHHhhhccCCEEEEEEECCC-CCCHhHHHHHHHHHHcCCCEEE
Confidence 268999999986421 122234689999999999886 5666677778777777899999
Q ss_pred EeccCCCcC--hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVD--TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~--~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++||+|+.. .+++.......-. ...... .++..+++||++|.|+++
T Consensus 193 viNKiDl~~~~~e~v~~~L~~~g~-~~~~~~-~~~~~v~iSAktGeGI~e 240 (587)
T TIGR00487 193 AINKIDKPEANPDRVKQELSEYGL-VPEDWG-GDTIFVPVSALTGDGIDE 240 (587)
T ss_pred EEECcccccCCHHHHHHHHHHhhh-hHHhcC-CCceEEEEECCCCCChHH
Confidence 999999863 2333222211100 000011 134568999999999876
No 129
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.39 E-value=1.1e-12 Score=119.87 Aligned_cols=146 Identities=14% Similarity=0.223 Sum_probs=87.9
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce-eEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR-FVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
+|+++|++|+|||||+|.|++... .. ...++.+. .... .+. +.+ .
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~--~~-~~~~~~~~~~~~~--------------~~~----~~~-----~-------- 47 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKF--KE-DSQHTIGVEFGSK--------------IIR----VGG-----K-------- 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-CCCCceeeeEEEE--------------EEE----ECC-----E--------
Confidence 589999999999999999998774 22 11122111 1100 000 000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHH---HhCCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIAS---LRGNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~---l~~~~~~ii 356 (547)
...+.++||||... +......++..+|.+++++|.++.........++.. +...+.|++
T Consensus 48 -------~~~l~l~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii 109 (161)
T cd04113 48 -------RVKLQIWDTAGQER-----------FRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVI 109 (161)
T ss_pred -------EEEEEEEECcchHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 02688999999742 123455667899999999999873322233334333 334578999
Q ss_pred EEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+....+.. .....+ .+... ...+.+||+++.++.+
T Consensus 110 vv~nK~D~~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 110 LVGNKSDLADQREVTFLEASRF----AQENG---LLFLETSALTGENVEE 152 (161)
T ss_pred EEEEchhcchhccCCHHHHHHH----HHHcC---CEEEEEECCCCCCHHH
Confidence 999999997532211 111111 11122 3458999999999874
No 130
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.39 E-value=2e-12 Score=126.05 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=80.4
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceee-ecCCCCCCCccccccchhhhhhhh
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIA-VHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
|+++|+.|+|||||+++|+...- .+..........++ ..........|.+.. ......+.+
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g--~i~~~g~v~~~~~~-~D~~~~e~~rg~ti~~~~~~~~~~~--------------- 63 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSG--AIRKLGSVDKGTTR-TDTMELERQRGITIFSAVASFQWED--------------- 63 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC--CccccccccCCccc-CCCchhHhhCCCceeeeeEEEEECC---------------
Confidence 89999999999999999997642 21111000000011 010111112222221 001111111
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEec
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLN 360 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlN 360 (547)
.++.++||||+.. |...+...+..+|.+++|+|+.+ +.......+++.+...+.|+++++|
T Consensus 64 -------~~i~liDTPG~~~-----------f~~~~~~~l~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~~~P~iivvN 124 (237)
T cd04168 64 -------TKVNLIDTPGHMD-----------FIAEVERSLSVLDGAILVISAVE-GVQAQTRILWRLLRKLNIPTIIFVN 124 (237)
T ss_pred -------EEEEEEeCCCccc-----------hHHHHHHHHHHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 3799999999964 22344556789999999999987 5666777788888778899999999
Q ss_pred cCCCcC
Q 008954 361 KADQVD 366 (547)
Q Consensus 361 K~D~~~ 366 (547)
|+|+..
T Consensus 125 K~D~~~ 130 (237)
T cd04168 125 KIDRAG 130 (237)
T ss_pred CccccC
Confidence 999874
No 131
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.39 E-value=2.1e-12 Score=135.61 Aligned_cols=164 Identities=19% Similarity=0.180 Sum_probs=97.9
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|+.++|||||+++|++.. ...+... .+....++...+...+|+++..-. ..+.. ++
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~---~~~g~~~--~~~~~~~d~~~~E~~rG~Ti~~~~-~~~~~----~~------- 74 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVL---AKEGGAA--ARAYDQIDNAPEEKARGITINTAH-VEYET----EN------- 74 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhH---HHhhccc--ccccccccCCHHHHhcCcceeeEE-EEEcC----CC-------
Confidence 3569999999999999999999653 1111100 000111222222334566652210 11100 11
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE-E
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR-V 357 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii-v 357 (547)
.++.|+||||+.. |.......+..+|++++|+|+.+ +...+..+.+..+...+.|.+ +
T Consensus 75 ---------~~~~liDtpGh~~-----------f~~~~~~~~~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~gi~~iIv 133 (394)
T TIGR00485 75 ---------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSATD-GPMPQTREHILLARQVGVPYIVV 133 (394)
T ss_pred ---------EEEEEEECCchHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEE
Confidence 3689999999853 22223334578999999999987 566777788887777788865 6
Q ss_pred EeccCCCcChHHHHHHH-HHHHHhhhhccCC--CCcEEEEecccCCC
Q 008954 358 VLNKADQVDTQQLMRVY-GALMWSLGKVLNT--PEVVRVYIGSFNDK 401 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~-~~l~~~l~~~~~~--~~v~~v~isa~~~~ 401 (547)
++||+|+++.++..+.. ..+...+.. ..+ ..++.+++||+++.
T Consensus 134 vvNK~Dl~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 134 FLNKCDMVDDEELLELVEMEVRELLSE-YDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred EEEecccCCHHHHHHHHHHHHHHHHHh-cCCCccCccEEECcccccc
Confidence 89999998755433322 222222222 222 22566899999885
No 132
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.39 E-value=3.4e-12 Score=118.77 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=88.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||++.+..... . ...||++..... . .+..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~--~--~~~~t~~~~~~~-------------~------~~~~-------------- 56 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES--V--TTIPTIGFNVET-------------V------TYKN-------------- 56 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC--C--CcCCccccceEE-------------E------EECC--------------
Confidence 6799999999999999999964442 1 223433321110 0 0011
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh-C---CCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR-G---NDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~-~---~~~~i 355 (547)
..+.++||||.... ......++.++|++|+++|.++...-++..+.+..+. . .+.|+
T Consensus 57 --------~~l~l~D~~G~~~~-----------~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pi 117 (175)
T smart00177 57 --------ISFTVWDVGGQDKI-----------RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVI 117 (175)
T ss_pred --------EEEEEEECCCChhh-----------HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcE
Confidence 26889999997531 2234556799999999999987432333344444432 1 25799
Q ss_pred EEEeccCCCcCh---HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDT---QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~---~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+... +++.+..+ +... ....+..+++||++|.|+.+
T Consensus 118 ilv~NK~Dl~~~~~~~~i~~~~~-----~~~~-~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 118 LVFANKQDLPDAMKAAEITEKLG-----LHSI-RDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEEEeCcCcccCCCHHHHHHHhC-----cccc-CCCcEEEEEeeCCCCCCHHH
Confidence 999999998643 23222111 1111 11223345799999999875
No 133
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.39 E-value=5.5e-12 Score=140.64 Aligned_cols=153 Identities=20% Similarity=0.265 Sum_probs=97.7
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
...|.|+|+|+.|+|||||+++|.+..+ ..+..++.|.... .. .+.+.+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v---~~~e~~GIT~~ig------------a~-----~v~~~~----------- 336 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNV---AAGEAGGITQHIG------------AY-----QVETNG----------- 336 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc---cccccCceeeecc------------EE-----EEEECC-----------
Confidence 3679999999999999999999988764 1221111111000 00 000111
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
..++|+||||+..- .......+..+|++|+|+|+.+ +...+..+.+..+...+.|++
T Consensus 337 -----------~~ItfiDTPGhe~F-----------~~m~~rga~~aDiaILVVdAdd-Gv~~qT~e~i~~a~~~~vPiI 393 (787)
T PRK05306 337 -----------GKITFLDTPGHEAF-----------TAMRARGAQVTDIVVLVVAADD-GVMPQTIEAINHAKAAGVPII 393 (787)
T ss_pred -----------EEEEEEECCCCccc-----------hhHHHhhhhhCCEEEEEEECCC-CCCHhHHHHHHHHHhcCCcEE
Confidence 37899999998642 2223334688999999999987 566777778888777889999
Q ss_pred EEeccCCCcChHHHHHHHHHHHH--hhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMW--SLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~--~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++||+|+.... ..++...+.. .+.+.. ...++.+++||++|.|+++
T Consensus 394 VviNKiDl~~a~-~e~V~~eL~~~~~~~e~~-g~~vp~vpvSAktG~GI~e 442 (787)
T PRK05306 394 VAINKIDKPGAN-PDRVKQELSEYGLVPEEW-GGDTIFVPVSAKTGEGIDE 442 (787)
T ss_pred EEEECccccccC-HHHHHHHHHHhcccHHHh-CCCceEEEEeCCCCCCchH
Confidence 999999996421 1122222210 000101 1235568999999999886
No 134
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.39 E-value=1.4e-12 Score=119.90 Aligned_cols=147 Identities=15% Similarity=0.158 Sum_probs=87.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce-eEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR-FVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
.+|+++|++|+|||||+|.+++..+ .. ...|+++. +... ++.. .+ ..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~--~~-~~~~t~~~~~~~~------------~~~~------~~----~~------- 49 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF--TS-AFVSTVGIDFKVK------------TVFR------ND----KR------- 49 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CC-CCCCceeeEEEEE------------EEEE------CC----EE-------
Confidence 3699999999999999999998875 21 11222221 1110 0000 00 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~~i 355 (547)
..+.++||||.... ..........+|++++++|.++...-++..+++..+.. ...|+
T Consensus 50 ---------~~~~l~Dt~g~~~~-----------~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 109 (165)
T cd01865 50 ---------VKLQIWDTAGQERY-----------RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQV 109 (165)
T ss_pred ---------EEEEEEECCChHHH-----------HHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 26889999996421 12345557899999999998763322333444444432 36789
Q ss_pred EEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+....... +....+ .+..+ ...+.+||+++.|+.+
T Consensus 110 ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 110 ILVGNKCDMEDERVVSSERGRQL----ADQLG---FEFFEASAKENINVKQ 153 (165)
T ss_pred EEEEECcccCcccccCHHHHHHH----HHHcC---CEEEEEECCCCCCHHH
Confidence 9999999997532211 111111 12222 2357899999999864
No 135
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.38 E-value=6.8e-12 Score=118.37 Aligned_cols=146 Identities=17% Similarity=0.228 Sum_probs=86.0
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||+|.|++..+ .. ...|+++..... ... +.+ .
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~-~~~~t~~~~~~~------------~~~------~~~-----~--------- 45 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VE-TYDPTIEDSYRK------------QVV------VDG-----Q--------- 45 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--Cc-cCCCchHhhEEE------------EEE------ECC-----E---------
Confidence 389999999999999999997664 22 122333211110 000 000 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC------CCCe
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG------NDDK 354 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~------~~~~ 354 (547)
...+.|+||||... +......++..+|++|+++|.++...-+....++..+.. .+.|
T Consensus 46 ------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 108 (190)
T cd04144 46 ------PCMLEVLDTAGQEE-----------YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP 108 (190)
T ss_pred ------EEEEEEEECCCchh-----------hHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 01588999999642 112344567899999999998763222333344443321 3579
Q ss_pred EEEEeccCCCcChHHHHHHH-HHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVY-GALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~-~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+....++.... ..+ .+..+ ...+.+||++|.++.+
T Consensus 109 iilvgNK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~e~SAk~~~~v~~ 153 (190)
T cd04144 109 IMIVGNKCDKVYEREVSTEEGAAL----ARRLG---CEFIEASAKTNVNVER 153 (190)
T ss_pred EEEEEEChhccccCccCHHHHHHH----HHHhC---CEEEEecCCCCCCHHH
Confidence 99999999986432221111 111 12122 2347999999999875
No 136
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.38 E-value=5.8e-12 Score=119.93 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=86.4
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||+|.+++..+ .....|+.+....... +.+.. + ..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~---~~~~~~t~~~d~~~~~-----------v~~~~-----~----~~--------- 49 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF---SQHYKATIGVDFALKV-----------IEWDP-----N----TV--------- 49 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCCceeEEEEEEE-----------EEECC-----C----CE---------
Confidence 699999999999999999998764 2222333332111000 00000 0 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh-------CCCC
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR-------GNDD 353 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~-------~~~~ 353 (547)
..+.++||||... +......++.++|++|+++|.++...-+....++..+. ..+.
T Consensus 50 -------~~l~l~Dt~G~~~-----------~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~ 111 (201)
T cd04107 50 -------VRLQLWDIAGQER-----------FGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPI 111 (201)
T ss_pred -------EEEEEEECCCchh-----------hhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 2678999999732 12345666899999999999876322222222222221 2467
Q ss_pred eEEEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|.||+|+...... ......+ .+..+. ...+.+||++|.++++
T Consensus 112 piilv~NK~Dl~~~~~~~~~~~~~~----~~~~~~--~~~~e~Sak~~~~v~e 158 (201)
T cd04107 112 PCLLLANKCDLKKRLAKDGEQMDQF----CKENGF--IGWFETSAKEGINIEE 158 (201)
T ss_pred cEEEEEECCCcccccccCHHHHHHH----HHHcCC--ceEEEEeCCCCCCHHH
Confidence 99999999999632111 1111122 111221 2347899999998875
No 137
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.38 E-value=4.7e-12 Score=116.20 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=86.4
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||++.++...+ .....|+++..... . ..+.+ .
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~---~~~~~~t~~~~~~~------------~------~~~~~-----~-------- 47 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRK------------Q------VEVDG-----Q-------- 47 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC---CcccCCcchheEEE------------E------EEECC-----E--------
Confidence 4699999999999999999996553 11222333321110 0 00000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~~i 355 (547)
...+.++||||... +..........+|++++++|.++...-+...+++..+. ..+.|+
T Consensus 48 -------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 109 (164)
T cd04175 48 -------QCMLEILDTAGTEQ-----------FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPM 109 (164)
T ss_pred -------EEEEEEEECCCccc-----------chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 02578999999743 12234456789999999999875322223333333332 246899
Q ss_pred EEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+....... .....+ .+... .+.+.+||+++.++.+
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 110 ILVGNKCDLEDERVVGKEQGQNL----ARQWG---CAFLETSAKAKINVNE 153 (164)
T ss_pred EEEEECCcchhccEEcHHHHHHH----HHHhC---CEEEEeeCCCCCCHHH
Confidence 9999999996432111 111122 11122 2457999999998875
No 138
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.38 E-value=2.9e-12 Score=117.89 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=88.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||++.+.+..+ .. ..+.|........ .. .+.+ ..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~--~~~~t~~~~~~~~----------~~------~~~~----~~-------- 50 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MA--DCPHTIGVEFGTR----------II------EVNG----QK-------- 50 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CC--CCCcccceeEEEE----------EE------EECC----EE--------
Confidence 4699999999999999999998774 21 1222221111000 00 0000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ii 356 (547)
..+.++||||... +......++..+|++|+++|.++...-+....++..+. ..+.|++
T Consensus 51 --------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii 111 (166)
T cd04122 51 --------IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIF 111 (166)
T ss_pred --------EEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 2678999999642 12344556789999999999987432233334444332 3467899
Q ss_pred EEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+....++. +....+ .+.. ....+.+||++|.|+.+
T Consensus 112 iv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 112 LIGNKADLEAQRDVTYEEAKQF----ADEN---GLLFLECSAKTGENVED 154 (166)
T ss_pred EEEECcccccccCcCHHHHHHH----HHHc---CCEEEEEECCCCCCHHH
Confidence 999999987543221 111111 1111 23457899999999875
No 139
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.38 E-value=1.7e-12 Score=118.93 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=86.7
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||++.+++..+ . ....|++..+... .+ .+.+ .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~-~~~~~t~~~~~~~------------~~------~~~~-----~-------- 47 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF--I-EKYDPTIEDFYRK------------EI------EVDS-----S-------- 47 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--C-CCCCCchhheEEE------------EE------EECC-----E--------
Confidence 4699999999999999999998774 2 2222332211110 00 0000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~~i 355 (547)
...+.|+||||...- ......+..++|++++++|.++...-++...++..+. ..+.|+
T Consensus 48 -------~~~l~i~Dt~G~~~~-----------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 109 (163)
T cd04176 48 -------PSVLEILDTAGTEQF-----------ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPI 109 (163)
T ss_pred -------EEEEEEEECCCcccc-----------cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 025789999996421 1233445789999999999876332233334433333 247899
Q ss_pred EEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+.....+.. ....+ .+... .+.+++||+++.++.+
T Consensus 110 viv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 110 ILVGNKVDLESEREVSSAEGRAL----AEEWG---CPFMETSAKSKTMVNE 153 (163)
T ss_pred EEEEECccchhcCccCHHHHHHH----HHHhC---CEEEEecCCCCCCHHH
Confidence 99999999864322111 11111 12122 3447999999998874
No 140
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.38 E-value=4.3e-12 Score=119.83 Aligned_cols=147 Identities=20% Similarity=0.205 Sum_probs=86.5
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCC-CCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIG-PEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~-~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
+|+++|.+|+|||||++.+.+... ..+ ..++++..... ... .+.+. .
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~---~~~~~~~t~~~~~~~-----------~~~------~~~~~----~-------- 49 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAF---LNGNFIATVGIDFRN-----------KVV------TVDGV----K-------- 49 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CccCcCCcccceeEE-----------EEE------EECCE----E--------
Confidence 589999999999999999998774 222 22222211110 000 00000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ii 356 (547)
-.+.|+||||... +......++..+|++|+++|.++...-+....++..+. ..+.|++
T Consensus 50 --------~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii 110 (191)
T cd04112 50 --------VKLQIWDTAGQER-----------FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIM 110 (191)
T ss_pred --------EEEEEEeCCCcHH-----------HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 2688999999632 11234556789999999999976322222333333333 3467999
Q ss_pred EEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+....++. .....+ .+... .+.+.+||++|.++.+
T Consensus 111 iv~NK~Dl~~~~~~~~~~~~~l----~~~~~---~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 111 LLGNKADMSGERVVKREDGERL----AKEYG---VPFMETSAKTGLNVEL 153 (191)
T ss_pred EEEEcccchhccccCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 999999986432111 111111 12122 2457999999998875
No 141
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.38 E-value=4e-12 Score=123.67 Aligned_cols=88 Identities=26% Similarity=0.431 Sum_probs=57.6
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|+|+|.. ..++..|.||.... .+...++.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~---~~v~~~~~tT~~~~-----------------------~g~~~~~~--------- 46 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK---SEVAAYEFTTLTCV-----------------------PGVLEYKG--------- 46 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ccccCCCCccccce-----------------------EEEEEECC---------
Confidence 58999999999999999999987 55565555553211 01111111
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCC
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHK 334 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~ 334 (547)
..+.++||||+.+....... +.......+.++|++++|+|+++
T Consensus 47 -------~~i~l~DtpG~~~~~~~~~~----~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 47 -------AKIQLLDLPGIIEGAADGKG----RGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred -------eEEEEEECCCcccccccchh----HHHHHHHhhccCCEEEEEecCCc
Confidence 37899999998764211111 11123345789999999999865
No 142
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.38 E-value=3.3e-12 Score=139.46 Aligned_cols=166 Identities=23% Similarity=0.271 Sum_probs=103.9
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccchhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.|+|+|+.++|||||+++|+...- ........+. .+++........|+++.. ...+.|.+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg--~~~~~~~v~~---~~~D~~~~ErerGiTI~~~~~~v~~~~-------------- 63 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSG--TFRANEAVAE---RVMDSNDLERERGITILAKNTAIRYNG-------------- 63 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC--CCccccccee---ecccCchHHHhCCccEEeeeEEEEECC--------------
Confidence 499999999999999999996531 1111111111 133333333445665522 11222222
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
..++|+||||+.+ |...+...+..+|.+++|+|+.+ +...+...++..+...+.|+++|+
T Consensus 64 --------~kinlIDTPGh~D-----------F~~ev~~~l~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~~ip~IVvi 123 (594)
T TIGR01394 64 --------TKINIVDTPGHAD-----------FGGEVERVLGMVDGVLLLVDASE-GPMPQTRFVLKKALELGLKPIVVI 123 (594)
T ss_pred --------EEEEEEECCCHHH-----------HHHHHHHHHHhCCEEEEEEeCCC-CCcHHHHHHHHHHHHCCCCEEEEE
Confidence 3799999999853 33345566789999999999987 667777888888888899999999
Q ss_pred ccCCCcCh--HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 360 NKADQVDT--QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 360 NK~D~~~~--~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
||+|+... .++......++..++..-....++.+++||+.|.+...
T Consensus 124 NKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~ 171 (594)
T TIGR01394 124 NKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLD 171 (594)
T ss_pred ECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCccccc
Confidence 99998642 23322222222122111011134568999999976543
No 143
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.37 E-value=3e-12 Score=120.92 Aligned_cols=151 Identities=15% Similarity=0.227 Sum_probs=86.5
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+|+|.+|+|||||+|.+++..+ ..++...|........ ...+.+ .
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~---~~~~~~~t~~~~~~~~----------------~~~~~~-----~--------- 48 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRF---LVGPYQNTIGAAFVAK----------------RMVVGE-----R--------- 48 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCc---CCcCcccceeeEEEEE----------------EEEECC-----E---------
Confidence 699999999999999999998774 2222222221111000 000000 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC--CCCeEEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG--NDDKIRVV 358 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~--~~~~iivV 358 (547)
...+.++||||...- ......+...+|++++++|..+...-+....++..+.. .+.|+++|
T Consensus 49 ------~~~l~i~D~~G~~~~-----------~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv 111 (193)
T cd04118 49 ------VVTLGIWDTAGSERY-----------EAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLC 111 (193)
T ss_pred ------EEEEEEEECCCchhh-----------hhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 015779999997431 11334456899999999999764322333344554443 26899999
Q ss_pred eccCCCcChHHHH-HH-HHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLM-RV-YGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~-~~-~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.||+|+....+.. .+ ...+ ..+.... ....+.+||+++.++.+
T Consensus 112 ~nK~Dl~~~~~~~~~v~~~~~-~~~~~~~---~~~~~~~Sa~~~~gv~~ 156 (193)
T cd04118 112 GTKSDLIEQDRSLRQVDFHDV-QDFADEI---KAQHFETSSKTGQNVDE 156 (193)
T ss_pred EEcccccccccccCccCHHHH-HHHHHHc---CCeEEEEeCCCCCCHHH
Confidence 9999986432100 00 0000 0111111 12347899999998864
No 144
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.37 E-value=6.2e-12 Score=117.81 Aligned_cols=148 Identities=15% Similarity=0.144 Sum_probs=86.8
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|++|+|||||++.+....+ . ...||++. ... .+ .+..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~--~--~~~~T~~~-~~~------------~~------~~~~------------- 60 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEV--V--TTIPTIGF-NVE------------TV------EYKN------------- 60 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc--c--ccCCcccc-ceE------------EE------EECC-------------
Confidence 36799999999999999999976553 2 12333321 110 00 0011
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH-hC---CCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL-RG---NDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l-~~---~~~~ 354 (547)
..+.++||||.... ......+...+|++|+++|+++...-.+....+..+ .. ...|
T Consensus 61 ---------~~~~l~D~~G~~~~-----------~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p 120 (182)
T PTZ00133 61 ---------LKFTMWDVGGQDKL-----------RPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV 120 (182)
T ss_pred ---------EEEEEEECCCCHhH-----------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC
Confidence 26899999998531 123455678999999999998633222223333333 22 2578
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+.......++...+ .+. ......++.+.+||++|.|+++
T Consensus 121 iilv~NK~Dl~~~~~~~~i~~~l--~~~-~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 121 LLVFANKQDLPNAMSTTEVTEKL--GLH-SVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEEEEeCCCCCCCCCHHHHHHHh--CCC-cccCCcEEEEeeeCCCCCCHHH
Confidence 99999999986421111111111 011 1111223445789999999875
No 145
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.37 E-value=3.8e-12 Score=117.89 Aligned_cols=147 Identities=15% Similarity=0.157 Sum_probs=87.5
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||++++++..+ .....|+.+....... ..+.+ .
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~~~-----------------~~~~~-----~--------- 47 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF---DKNYKATIGVDFEMER-----------------FEILG-----V--------- 47 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEEEE-----------------EEECC-----E---------
Confidence 589999999999999999999874 2222333332211000 00000 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~ii 356 (547)
...+.++||||... +..........+|++++++|+.+........+++..+.+ ...|++
T Consensus 48 ------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii 110 (170)
T cd04108 48 ------PFSLQLWDTAGQER-----------FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLF 110 (170)
T ss_pred ------EEEEEEEeCCChHH-----------HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 02689999999742 122345557899999999999763323334444544422 235689
Q ss_pred EEeccCCCcChHHH---HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQL---MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l---~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.+..+. ......+ .+..+ ...+.+||++|.++.+
T Consensus 111 lVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~---~~~~e~Sa~~g~~v~~ 155 (170)
T cd04108 111 LVGTKKDLSSPAQYALMEQDAIKL----AAEMQ---AEYWSVSALSGENVRE 155 (170)
T ss_pred EEEEChhcCccccccccHHHHHHH----HHHcC---CeEEEEECCCCCCHHH
Confidence 99999998654321 1111111 12122 2336899999999874
No 146
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.37 E-value=9.8e-13 Score=144.01 Aligned_cols=143 Identities=22% Similarity=0.239 Sum_probs=92.7
Q ss_pred eCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhccccc
Q 008954 206 GQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMSHP 285 (547)
Q Consensus 206 G~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (547)
|.+|+|||||+|+|+|.. ..+++.|++|...... ...+.+
T Consensus 1 G~pNvGKSSL~N~Ltg~~---~~v~n~pG~Tv~~~~~-----------------~i~~~~-------------------- 40 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN---QTVGNWPGVTVEKKEG-----------------KLGFQG-------------------- 40 (591)
T ss_pred CCCCCCHHHHHHHHhCCC---CeecCCCCeEEEEEEE-----------------EEEECC--------------------
Confidence 899999999999999987 6777777776533210 000111
Q ss_pred ccccceEEcCCCCCChhhhhhhcccChHHHHHHH--hhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 286 LLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWF--AAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 286 ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~--~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
..+.++||||..+-.....+ ..+.+.+ ...+|++++++|+++. +....+..++.+.+.|+++|+||+|
T Consensus 41 --~~i~lvDtPG~~~~~~~s~~-----e~v~~~~l~~~~aDvvI~VvDat~l---er~l~l~~ql~~~~~PiIIVlNK~D 110 (591)
T TIGR00437 41 --EDIEIVDLPGIYSLTTFSLE-----EEVARDYLLNEKPDLVVNVVDASNL---ERNLYLTLQLLELGIPMILALNLVD 110 (591)
T ss_pred --eEEEEEECCCccccCccchH-----HHHHHHHHhhcCCCEEEEEecCCcc---hhhHHHHHHHHhcCCCEEEEEehhH
Confidence 26889999999763211111 1233333 2589999999999863 2334555566667899999999999
Q ss_pred CcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 364 QVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 364 ~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+.....+......+ .+.++ ++.+++||++|.|+++
T Consensus 111 l~~~~~i~~d~~~L----~~~lg---~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 111 EAEKKGIRIDEEKL----EERLG---VPVVPTSATEGRGIER 145 (591)
T ss_pred HHHhCCChhhHHHH----HHHcC---CCEEEEECCCCCCHHH
Confidence 86433222222222 33333 3457999999999886
No 147
>PTZ00369 Ras-like protein; Provisional
Probab=99.37 E-value=4e-12 Score=119.82 Aligned_cols=148 Identities=11% Similarity=0.098 Sum_probs=87.6
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|.+|+|||||++.+++..+ .....|+++..... ... +.+ +.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~---~~~~~~t~~~~~~~------------~~~------~~~----~~------- 52 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF---IDEYDPTIEDSYRK------------QCV------IDE----ET------- 52 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC---CcCcCCchhhEEEE------------EEE------ECC----EE-------
Confidence 46899999999999999999998764 11122332211110 000 000 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~~ 354 (547)
..+.++||||...- ......+...+|++++++|.++...-+....++..+. ..+.|
T Consensus 53 ---------~~l~i~Dt~G~~~~-----------~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~p 112 (189)
T PTZ00369 53 ---------CLLDILDTAGQEEY-----------SAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVP 112 (189)
T ss_pred ---------EEEEEEeCCCCccc-----------hhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 25789999997542 1233445789999999999987332223333333332 23679
Q ss_pred EEEEeccCCCcChHHHHHH-HHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~-~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+.....+... ...+ .+... .+.+.+||+++.|+.+
T Consensus 113 iiiv~nK~Dl~~~~~i~~~~~~~~----~~~~~---~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 113 MILVGNKCDLDSERQVSTGEGQEL----AKSFG---IPFLETSAKQRVNVDE 157 (189)
T ss_pred EEEEEECcccccccccCHHHHHHH----HHHhC---CEEEEeeCCCCCCHHH
Confidence 9999999998643221111 1111 11122 3457999999999874
No 148
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.37 E-value=4.8e-12 Score=115.66 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=85.6
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|.+++..+ . ....+++...... ... +.+ .
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~--~-~~~~~~~~~~~~~------------~~~------~~~-----~--------- 46 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF--V-EDYEPTKADSYRK------------KVV------LDG-----E--------- 46 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--c-cccCCcchhhEEE------------EEE------ECC-----E---------
Confidence 699999999999999999998774 1 1222222211100 000 000 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~ii 356 (547)
...+.++||||.... ......++..+|.+++++|..+...-......+..+ ...+.|++
T Consensus 47 ------~~~~~i~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 109 (164)
T cd04139 47 ------DVQLNILDTAGQEDY-----------AAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLL 109 (164)
T ss_pred ------EEEEEEEECCChhhh-----------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 026889999997532 234556778999999999876532111122222222 23578999
Q ss_pred EEeccCCCcChH-HHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQ-QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~-~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.... ........+ .+... .+.+.+||+++.|+.+
T Consensus 110 iv~NK~D~~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 152 (164)
T cd04139 110 LVGNKCDLEDKRQVSSEEAANL----ARQWG---VPYVETSAKTRQNVEK 152 (164)
T ss_pred EEEEccccccccccCHHHHHHH----HHHhC---CeEEEeeCCCCCCHHH
Confidence 999999997621 111111111 11111 3458999999999875
No 149
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.37 E-value=5.7e-12 Score=133.69 Aligned_cols=170 Identities=16% Similarity=0.137 Sum_probs=107.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCC------------CCcccceeEEEEeCCCccccCCceeeec-CCCCCCCc
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIG------------PEPTTDRFVVVMSGPDERTIPGNTIAVH-ADLPFSGL 266 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~------------~~~~T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l 266 (547)
..|+++|+.++|||||+.+|+...- .... ....+.++..+++...+....|++.... ..+.+.+
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g--~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~- 84 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCG--GIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK- 84 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcC--CcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC-
Confidence 4699999999999999999986431 1110 0111222223444444444556665321 1111111
Q ss_pred cccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCC-------CH
Q 008954 267 TTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDI-------SD 339 (547)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~-------~~ 339 (547)
..++|+||||+.+ |...+...+..+|++++|+|+.. +. ..
T Consensus 85 ---------------------~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~-G~~e~~~~~~~ 131 (446)
T PTZ00141 85 ---------------------YYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTA-GEFEAGISKDG 131 (446)
T ss_pred ---------------------eEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCC-CceecccCCCc
Confidence 3789999999753 23344555789999999999986 33 24
Q ss_pred HHHHHHHHHhCCCCe-EEEEeccCCCc----ChHHHHHHHHHHHHhhhhccCC--CCcEEEEecccCCCCCCCC
Q 008954 340 EFKRVIASLRGNDDK-IRVVLNKADQV----DTQQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 340 ~~~~ll~~l~~~~~~-iivVlNK~D~~----~~~~l~~~~~~l~~~l~~~~~~--~~v~~v~isa~~~~~l~~~ 406 (547)
+..+.+..+...+.| +++++||+|.. +.+.+.++...+...+... ++ ..++.+++|+++|.++.+.
T Consensus 132 qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~-g~~~~~~~~ipiSa~~g~ni~~~ 204 (446)
T PTZ00141 132 QTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKV-GYNPEKVPFIPISGWQGDNMIEK 204 (446)
T ss_pred cHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhc-CCCcccceEEEeecccCCCcccC
Confidence 567777777777876 67999999943 2344555555554444432 22 3477799999999999763
No 150
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.37 E-value=7e-12 Score=117.33 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=87.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|..|+|||||++.+....+ . ...||.+..... ..+.+
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~--~--~~~pt~g~~~~~-------------------~~~~~-------------- 60 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEI--V--TTIPTIGFNVET-------------------VEYKN-------------- 60 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--c--cccCCcceeEEE-------------------EEECC--------------
Confidence 5799999999999999999986553 2 223443321110 00011
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~i 355 (547)
..+.++||||... +......+..++|++|+|+|+++...-++....+..+.. .+.|+
T Consensus 61 --------~~~~i~D~~Gq~~-----------~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~pi 121 (181)
T PLN00223 61 --------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121 (181)
T ss_pred --------EEEEEEECCCCHH-----------HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCE
Confidence 2689999999742 122345567899999999999874322233333333321 36799
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+....+..+....+ .+.. +.......+.+||++|+|+.+
T Consensus 122 ilv~NK~Dl~~~~~~~~~~~~l--~l~~-~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 122 LVFANKQDLPNAMNAAEITDKL--GLHS-LRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred EEEEECCCCCCCCCHHHHHHHh--Cccc-cCCCceEEEeccCCCCCCHHH
Confidence 9999999986542222222211 0111 111122334689999999875
No 151
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.37 E-value=3e-12 Score=143.54 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=98.2
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+|+|++|+|||||+|+|++..- .. .....+.....+++........|+++.. ...+.+.+
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g--~~-~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~------------- 74 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTG--RI-HKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG------------- 74 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCC--Cc-cccccccCCccccCCCHHHHhcCCCEecceEEEEECC-------------
Confidence 4699999999999999999987542 11 1100010011122222222345555521 12222222
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
.+++|+||||+... ...+...+..+|++++|+|+.+ +...+...+++.+...+.|+++|
T Consensus 75 ---------~~i~liDTPG~~~~-----------~~~~~~~l~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~p~ivv 133 (689)
T TIGR00484 75 ---------HRINIIDTPGHVDF-----------TVEVERSLRVLDGAVAVLDAVG-GVQPQSETVWRQANRYEVPRIAF 133 (689)
T ss_pred ---------eEEEEEECCCCcch-----------hHHHHHHHHHhCEEEEEEeCCC-CCChhHHHHHHHHHHcCCCEEEE
Confidence 37999999999742 1234556789999999999987 66777778888888888999999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCC-cEEEEecccCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPE-VVRVYIGSFND 400 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~-v~~v~isa~~~ 400 (547)
+||+|+.... ..+....+...+ .... ...+++|+..+
T Consensus 134 iNK~D~~~~~-~~~~~~~i~~~l----~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 134 VNKMDKTGAN-FLRVVNQIKQRL----GANAVPIQLPIGAEDN 171 (689)
T ss_pred EECCCCCCCC-HHHHHHHHHHHh----CCCceeEEeccccCCC
Confidence 9999998532 333333332222 2222 23467777665
No 152
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.37 E-value=6.2e-12 Score=114.96 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=87.0
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||+|.+.+... .....|+.+...... .. .+... +.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~~-----------~~------~~~~~---~~--------- 49 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF---TKDYKKTIGVDFLEK-----------QI------FLRQS---DE--------- 49 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCCcEEEEEEEE-----------EE------EEcCC---CC---------
Confidence 599999999999999999998764 222223322211100 00 00000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC--CCCeEEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG--NDDKIRVV 358 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~--~~~~iivV 358 (547)
...+.++||||... +......+...+|++++++|..+...-+....++..+.. .+.|+++|
T Consensus 50 ------~~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv 112 (162)
T cd04106 50 ------DVRLMLWDTAGQEE-----------FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLV 112 (162)
T ss_pred ------EEEEEEeeCCchHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 02688999999532 223455667899999999998763322222333333322 36899999
Q ss_pred eccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.||+|+....++.. ....+ .+..+ .+.+++||+++.++++
T Consensus 113 ~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 113 QTKIDLLDQAVITNEEAEAL----AKRLQ---LPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEChhcccccCCCHHHHHHH----HHHcC---CeEEEEECCCCCCHHH
Confidence 99999875322111 11111 12122 2447899999988764
No 153
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.37 E-value=1.3e-11 Score=115.02 Aligned_cols=158 Identities=18% Similarity=0.155 Sum_probs=88.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||+|.+.+..+. ....|+.+...... ........+..... .+.
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~---~~~~~t~~~~~~~~-----------~~~~~~~~~~~~~~-~~~-------- 61 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFN---PKFITTVGIDFREK-----------RVVYNSSGPGGTLG-RGQ-------- 61 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC---ccCCCccceEEEEE-----------EEEEcCcccccccc-CCC--------
Confidence 57999999999999999999987741 12222222111100 00000000000000 000
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~i 355 (547)
...+.|+||||... +......++..+|++++++|.++...-.....++..+.. .+.|+
T Consensus 62 -------~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 123 (180)
T cd04127 62 -------RIHLQLWDTAGQER-----------FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDI 123 (180)
T ss_pred -------EEEEEEEeCCChHH-----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE
Confidence 02688999999632 123455667899999999999763222223333444432 35789
Q ss_pred EEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+.....+. .....+ .+..+ ++.+.+||+++.++++
T Consensus 124 iiv~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~e~Sak~~~~v~~ 167 (180)
T cd04127 124 VLCGNKADLEDQRQVSEEQAKAL----ADKYG---IPYFETSAATGTNVEK 167 (180)
T ss_pred EEEEeCccchhcCccCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 9999999986432111 111111 12122 3457999999998875
No 154
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.36 E-value=4.2e-12 Score=122.25 Aligned_cols=148 Identities=11% Similarity=0.164 Sum_probs=87.5
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||+|.|++..+ .....|+.+....... +.++.. ..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~---~~~~~~T~~~d~~~~~-----------i~~~~~---~~--------------- 49 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF---GKSYKQTIGLDFFSKR-----------VTLPGN---LN--------------- 49 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC---CCCCCCceeEEEEEEE-----------EEeCCC---CE---------------
Confidence 589999999999999999998774 2233344332111000 000000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC------CCCe
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG------NDDK 354 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~------~~~~ 354 (547)
..+.|+||||.... ......++..+|++|+++|.++...-+....++..+.. .+.|
T Consensus 50 -------~~~~i~Dt~G~~~~-----------~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~p 111 (215)
T cd04109 50 -------VTLQVWDIGGQSIG-----------GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPL 111 (215)
T ss_pred -------EEEEEEECCCcHHH-----------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCce
Confidence 26889999996321 22445567899999999999874322333333333332 2357
Q ss_pred EEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+....+.. .....+ .+..+ ...+.+||++|.++++
T Consensus 112 iilVgNK~DL~~~~~v~~~~~~~~----~~~~~---~~~~~iSAktg~gv~~ 156 (215)
T cd04109 112 VVLVGNKTDLEHNRTVKDDKHARF----AQANG---MESCLVSAKTGDRVNL 156 (215)
T ss_pred EEEEEECcccccccccCHHHHHHH----HHHcC---CEEEEEECCCCCCHHH
Confidence 89999999997432211 111111 22222 2347899999999875
No 155
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.36 E-value=6.7e-12 Score=115.65 Aligned_cols=149 Identities=12% Similarity=0.149 Sum_probs=87.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|++|+|||||++++.+..+ ..+..++.+...... ...+.+ .
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~-----------------~~~~~~-----~-------- 54 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLF---PPGQGATIGVDFMIK-----------------TVEIKG-----E-------- 54 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCceeeEEEEE-----------------EEEECC-----E--------
Confidence 6799999999999999999997664 222223322111100 000001 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHH---HHHhCCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVI---ASLRGNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll---~~l~~~~~~ii 356 (547)
-..+.++||||...- ......++..+|++++++|..+....+.....+ +.+...+.|++
T Consensus 55 -------~~~~~~~D~~g~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i 116 (169)
T cd04114 55 -------KIKLQIWDTAGQERF-----------RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITI 116 (169)
T ss_pred -------EEEEEEEECCCcHHH-----------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 015778999997431 123455678999999999987632212222333 33344578899
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+....++....... +.+.. ....+.+||++|.++.+
T Consensus 117 ~v~NK~D~~~~~~i~~~~~~~---~~~~~---~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 117 LVGNKIDLAERREVSQQRAEE---FSDAQ---DMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcccccccccCHHHHHH---HHHHc---CCeEEEeeCCCCCCHHH
Confidence 999999987543322211111 12222 13457999999988764
No 156
>PRK10218 GTP-binding protein; Provisional
Probab=99.35 E-value=1.1e-11 Score=135.32 Aligned_cols=166 Identities=22% Similarity=0.236 Sum_probs=101.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+|+|+.++|||||+++|++..- ........ .. .+++........|.+... ...+.+.+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g--~~~~~~~~--~~-~v~D~~~~E~erGiTi~~~~~~i~~~~------------- 67 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSG--TFDSRAET--QE-RVMDSNDLEKERGITILAKNTAIKWND------------- 67 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcC--Cccccccc--ce-eeeccccccccCceEEEEEEEEEecCC-------------
Confidence 4699999999999999999997541 22111111 11 233333333344555421 11122222
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
..+.++||||+.+ |...+...+..+|.+|+|+|+.+ +...+...++..+...+.|.++|
T Consensus 68 ---------~~inliDTPG~~d-----------f~~~v~~~l~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~gip~IVv 126 (607)
T PRK10218 68 ---------YRINIVDTPGHAD-----------FGGEVERVMSMVDSVLLVVDAFD-GPMPQTRFVTKKAFAYGLKPIVV 126 (607)
T ss_pred ---------EEEEEEECCCcch-----------hHHHHHHHHHhCCEEEEEEeccc-CccHHHHHHHHHHHHcCCCEEEE
Confidence 3799999999864 22345566899999999999987 56667777787777788999999
Q ss_pred eccCCCcCh--HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCC
Q 008954 359 LNKADQVDT--QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 359 lNK~D~~~~--~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~ 404 (547)
+||+|.... .+.......++..+.......+++.+++||+.|.+..
T Consensus 127 iNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~ 174 (607)
T PRK10218 127 INKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGL 174 (607)
T ss_pred EECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccC
Confidence 999998632 2222222222111111111123556899999997543
No 157
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.35 E-value=1.7e-11 Score=124.78 Aligned_cols=176 Identities=19% Similarity=0.226 Sum_probs=97.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCC--C-CCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNY--P-GAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~--~-~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
..|||+|.+|+|||||||+|-|... + .+++|...||...+-.
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y----------------------------------- 80 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY----------------------------------- 80 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE-----------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC-----------------------------------
Confidence 4599999999999999999987432 1 1455554455443332
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
+||-..+++++|.||+.... ..... |. -.--+...|.+|++.+. ..+..+..+.+.+...++++.
T Consensus 81 ------~~p~~pnv~lWDlPG~gt~~-f~~~~---Yl--~~~~~~~yD~fiii~s~---rf~~ndv~La~~i~~~gK~fy 145 (376)
T PF05049_consen 81 ------PHPKFPNVTLWDLPGIGTPN-FPPEE---YL--KEVKFYRYDFFIIISSE---RFTENDVQLAKEIQRMGKKFY 145 (376)
T ss_dssp ------E-SS-TTEEEEEE--GGGSS---HHH---HH--HHTTGGG-SEEEEEESS---S--HHHHHHHHHHHHTT-EEE
T ss_pred ------CCCCCCCCeEEeCCCCCCCC-CCHHH---HH--HHccccccCEEEEEeCC---CCchhhHHHHHHHHHcCCcEE
Confidence 22333589999999997642 11111 11 11126889998887765 356778889999999999999
Q ss_pred EEeccCCC-cC-----------hHH-HHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCCCCCCCcchHhhHHHHHHH
Q 008954 357 VVLNKADQ-VD-----------TQQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINGEVVGPIGQELFEKEQDDL 423 (547)
Q Consensus 357 vVlNK~D~-~~-----------~~~-l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~~~~~~~~~~~~~~~~e~l 423 (547)
+|-+|+|. +. .++ +.++.....+.|.+. +..+..++.||++.-..++ |+.-++.|
T Consensus 146 fVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~-gv~~P~VFLVS~~dl~~yD-----------Fp~L~~tL 213 (376)
T PF05049_consen 146 FVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA-GVSEPQVFLVSSFDLSKYD-----------FPKLEETL 213 (376)
T ss_dssp EEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT-T-SS--EEEB-TTTTTSTT-----------HHHHHHHH
T ss_pred EEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc-CCCcCceEEEeCCCcccCC-----------hHHHHHHH
Confidence 99999996 21 112 222233333444442 2234445778888755444 77666667
Q ss_pred HHHHhhchhhHHHH
Q 008954 424 LMDLIDIPKKACDR 437 (547)
Q Consensus 424 ~~~l~~~~~~~~~~ 437 (547)
..+|...-++....
T Consensus 214 ~~dLp~~Kr~~fll 227 (376)
T PF05049_consen 214 EKDLPAHKRHAFLL 227 (376)
T ss_dssp HHHS-GGGHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 66665555444433
No 158
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.35 E-value=5e-12 Score=125.96 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=64.9
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChH
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQ 368 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~ 368 (547)
.+.++||||..+ |...+...+..+|.+++++|+.. +.......+++.+...+.|+++|+||+|....
T Consensus 65 ~i~liDtPG~~~-----------f~~~~~~~l~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~- 131 (268)
T cd04170 65 KINLIDTPGYAD-----------FVGETRAALRAADAALVVVSAQS-GVEVGTEKLWEFADEAGIPRIIFINKMDRERA- 131 (268)
T ss_pred EEEEEECcCHHH-----------HHHHHHHHHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECCccCCC-
Confidence 789999999853 22234556789999999999987 55556667777777788999999999998754
Q ss_pred HHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCC
Q 008954 369 QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 369 ~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~ 404 (547)
........+ ...++. .+.++.++...+.++.
T Consensus 132 ~~~~~~~~l----~~~~~~-~~~~~~ip~~~~~~~~ 162 (268)
T cd04170 132 DFDKTLAAL----QEAFGR-PVVPLQLPIGEGDDFK 162 (268)
T ss_pred CHHHHHHHH----HHHhCC-CeEEEEecccCCCcee
Confidence 222233333 222222 2334455555655543
No 159
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.35 E-value=3.8e-12 Score=116.70 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=86.8
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|||||||+++|.+.... .+....|+++....... . ++.+ +.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~-~~~~~~~t~~~~~~~~~-----------~------~~~~----~~--------- 50 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAV-FPKNYLMTTGCDFVVKE-----------V------PVDT----DN--------- 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-cCccCCCceEEEEEEEE-----------E------EeCC----CC---------
Confidence 6999999999999999999864210 11122233322111000 0 0000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC--CCCeEEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG--NDDKIRVV 358 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~--~~~~iivV 358 (547)
...+.++||||... +......++.++|++++++|.++...-.....++..+.. .+.|+++|
T Consensus 51 ------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv 113 (164)
T cd04101 51 ------TVELFIFDSAGQEL-----------YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLV 113 (164)
T ss_pred ------EEEEEEEECCCHHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 02688999999632 112345567899999999998763222233444454443 35899999
Q ss_pred eccCCCcChHHHHHHH-HHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVY-GALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~-~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.||+|+.+..++.... ..+ ..... ...+.+||.++.|+.+
T Consensus 114 ~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 114 GNKMDLADKAEVTDAQAQAF----AQANQ---LKFFKTSALRGVGYEE 154 (164)
T ss_pred EECcccccccCCCHHHHHHH----HHHcC---CeEEEEeCCCCCChHH
Confidence 9999987543222111 111 11112 2347899999999874
No 160
>PRK00007 elongation factor G; Reviewed
Probab=99.35 E-value=3.4e-12 Score=142.95 Aligned_cols=160 Identities=21% Similarity=0.251 Sum_probs=98.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceee-ecCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIA-VHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+|+|++|+|||||+|+|+...-.....+... .. ..+++.......+|+++. ....+.|.+
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~--~~-~~~~D~~~~E~~rg~ti~~~~~~~~~~~------------- 74 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVH--DG-AATMDWMEQEQERGITITSAATTCFWKD------------- 74 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccc--CC-cccCCCCHHHHhCCCCEeccEEEEEECC-------------
Confidence 4699999999999999999985331001111100 00 111222222234455542 112222222
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
.+++|+||||+.+ |...+...+..+|++++|+|+.. +...++..++..+...+.|++++
T Consensus 75 ---------~~~~liDTPG~~~-----------f~~ev~~al~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~~~p~iv~ 133 (693)
T PRK00007 75 ---------HRINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVG-GVEPQSETVWRQADKYKVPRIAF 133 (693)
T ss_pred ---------eEEEEEeCCCcHH-----------HHHHHHHHHHHcCEEEEEEECCC-CcchhhHHHHHHHHHcCCCEEEE
Confidence 3899999999853 22234555789999999999987 77888889999998889999999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFND 400 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~ 400 (547)
+||+|+.... ..+....+...++. ......+++|+..+
T Consensus 134 vNK~D~~~~~-~~~~~~~i~~~l~~---~~~~~~ipisa~~~ 171 (693)
T PRK00007 134 VNKMDRTGAD-FYRVVEQIKDRLGA---NPVPIQLPIGAEDD 171 (693)
T ss_pred EECCCCCCCC-HHHHHHHHHHHhCC---CeeeEEecCccCCc
Confidence 9999998542 33334444322221 12233467777665
No 161
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.35 E-value=9.4e-12 Score=123.95 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=43.7
Q ss_pred cCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHH
Q 008954 322 KCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGAL 377 (547)
Q Consensus 322 ~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l 377 (547)
++|++++++++...+..+.+.++++.+.. +.|+++|+||+|++..+++......+
T Consensus 114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~e~~~~k~~i 168 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEELKEFKQRI 168 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCHHHHHHHHHHH
Confidence 58899999988765677778899999886 68999999999999876655444333
No 162
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.34 E-value=3.6e-12 Score=121.03 Aligned_cols=148 Identities=20% Similarity=0.211 Sum_probs=85.4
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||++.+++..+ . ....+++...... ...+.+. .
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~-~~~~~t~~~~~~~------------------~~~~~~~----~--------- 46 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--E-PKYRRTVEEMHRK------------------EYEVGGV----S--------- 46 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--C-ccCCCchhhheeE------------------EEEECCE----E---------
Confidence 389999999999999999998774 1 1112222111110 0000110 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~ii 356 (547)
..+.|+||||...- .......+..+|++++++|..+...-+....++..+ ...+.|++
T Consensus 47 -------~~l~i~D~~G~~~~-----------~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 108 (198)
T cd04147 47 -------LTLDILDTSGSYSF-----------PAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIV 108 (198)
T ss_pred -------EEEEEEECCCchhh-----------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 26789999997531 123345578999999999997632222222222222 23478999
Q ss_pred EEeccCCCcCh-HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDT-QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~-~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+... ..+.... .. .... .. .....+.+||++|.|+.+
T Consensus 109 lv~NK~Dl~~~~~~v~~~~-~~--~~~~-~~-~~~~~~~~Sa~~g~gv~~ 153 (198)
T cd04147 109 VVGNKADSLEEERQVPAKD-AL--STVE-LD-WNCGFVETSAKDNENVLE 153 (198)
T ss_pred EEEEccccccccccccHHH-HH--HHHH-hh-cCCcEEEecCCCCCCHHH
Confidence 99999998752 2111100 00 0001 01 122347899999999875
No 163
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.34 E-value=3.3e-12 Score=115.11 Aligned_cols=147 Identities=22% Similarity=0.242 Sum_probs=82.7
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||+|.|++.. .+.+..++++....... ..+.+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~---~~~~~~~~~~~~~~~~~-----------------~~~~~~------------- 48 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK---FITEYKPGTTRNYVTTV-----------------IEEDGK------------- 48 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC---CcCcCCCCceeeeeEEE-----------------EEECCE-------------
Confidence 479999999999999999999988 55555555555433100 000000
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCC------CCCHHHHHHHHHHhCCCC
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKL------DISDEFKRVIASLRGNDD 353 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~------~~~~~~~~ll~~l~~~~~ 353 (547)
...+.++||||..... .........++.++.++|.... ........+.... ..+.
T Consensus 49 -------~~~~~~~D~~G~~~~~-----------~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~ 109 (161)
T TIGR00231 49 -------TYKFNLLDTAGQEDYR-----------AIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ESNV 109 (161)
T ss_pred -------EEEEEEEECCCcccch-----------HHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-ccCC
Confidence 0167899999964321 1122223445555555443321 1112222223333 2378
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+.... ......... .. ... ...+++||..+.++.+
T Consensus 110 p~ivv~nK~D~~~~~-~~~~~~~~~---~~-~~~--~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 110 PIILVGNKIDLRDAK-LKTHVAFLF---AK-LNG--EPIIPLSAETGKNIDS 154 (161)
T ss_pred cEEEEEEcccCCcch-hhHHHHHHH---hh-ccC--CceEEeecCCCCCHHH
Confidence 999999999998643 222222221 11 122 2358999999988764
No 164
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.34 E-value=1.1e-11 Score=137.07 Aligned_cols=157 Identities=18% Similarity=0.307 Sum_probs=97.5
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
...+.|+|+|+.|+|||||+++|.+..+ . .+..++.+..... ......+.+ ..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~--~-~~e~~GiTq~i~~---------------~~v~~~~~~----~~----- 294 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI--A-QKEAGGITQKIGA---------------YEVEFEYKD----EN----- 294 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC--c-cccCCccccccce---------------EEEEEEecC----Cc-----
Confidence 3668999999999999999999998764 2 1111111110000 000000000 00
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
..++|+||||+.. |.......+..+|++|+|+|+.+ +...+..+.+..+...+.|++
T Consensus 295 -----------~kItfiDTPGhe~-----------F~~mr~rg~~~aDiaILVVDA~d-Gv~~QT~E~I~~~k~~~iPiI 351 (742)
T CHL00189 295 -----------QKIVFLDTPGHEA-----------FSSMRSRGANVTDIAILIIAADD-GVKPQTIEAINYIQAANVPII 351 (742)
T ss_pred -----------eEEEEEECCcHHH-----------HHHHHHHHHHHCCEEEEEEECcC-CCChhhHHHHHHHHhcCceEE
Confidence 3789999999842 22334445789999999999987 566677778888877889999
Q ss_pred EEeccCCCcChHHHHHHHHHHHH-h-hhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMW-S-LGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~-~-l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+.... ..++...+.. . +....+ ..++.+++||++|.|+.+
T Consensus 352 VViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g-~~vpvv~VSAktG~GIde 400 (742)
T CHL00189 352 VAINKIDKANAN-TERIKQQLAKYNLIPEKWG-GDTPMIPISASQGTNIDK 400 (742)
T ss_pred EEEECCCccccC-HHHHHHHHHHhccchHhhC-CCceEEEEECCCCCCHHH
Confidence 999999997531 1122222210 0 000011 234568999999998875
No 165
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.34 E-value=5.2e-12 Score=115.13 Aligned_cols=147 Identities=21% Similarity=0.239 Sum_probs=86.2
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|.+++..+ .. ...++++....... +. +.+ ..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~--~~-~~~~~~~~~~~~~~-------------~~----~~~----~~--------- 48 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKF--NE-KHESTTQASFFQKT-------------VN----IGG----KR--------- 48 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-CcCCccceeEEEEE-------------EE----ECC----EE---------
Confidence 589999999999999999998875 22 22222222111000 00 000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~iiv 357 (547)
..+.++||||.... ......+...+|++++++|.++...-.....++..+. ..+.|+++
T Consensus 49 -------~~~~~~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piii 110 (162)
T cd04123 49 -------IDLAIWDTAGQERY-----------HALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVI 110 (162)
T ss_pred -------EEEEEEECCchHHH-----------HHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 26889999995321 1234455789999999999876332222233333332 33689999
Q ss_pred EeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+||+|+....++. .....+ .+.. ....+++|++++.++.+
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~----~~~~---~~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 111 VGNKIDLERQRVVSKSEAEEY----AKSV---GAKHFETSAKTGKGIEE 152 (162)
T ss_pred EEECcccccccCCCHHHHHHH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 99999987432211 111111 1111 22347899999998874
No 166
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.34 E-value=8.7e-12 Score=132.40 Aligned_cols=172 Identities=22% Similarity=0.213 Sum_probs=96.0
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCC----------CCcc--cceeEEEEeCCCccccCCceeeec-CCCCCCC
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIG----------PEPT--TDRFVVVMSGPDERTIPGNTIAVH-ADLPFSG 265 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~----------~~~~--T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~ 265 (547)
...|+++|+.++|||||+++|+...- .... ..-+ +..+..+++...+....|+++... ..+.+..
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g--~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCG--AIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhC--CcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 35699999999999999999996441 1110 0000 111122233333334556655221 1111111
Q ss_pred ccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCC--CCHHHHH
Q 008954 266 LTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLD--ISDEFKR 343 (547)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~--~~~~~~~ 343 (547)
..+.|+||||+.. |.......+..+|++++|+|+.+.. ...+..+
T Consensus 85 ----------------------~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~ 131 (426)
T TIGR00483 85 ----------------------YEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTRE 131 (426)
T ss_pred ----------------------eEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHH
Confidence 3789999999642 1122333468899999999998731 2222233
Q ss_pred HHHHHhCCC-CeEEEEeccCCCcC--hHHHHHHHHHHHHhhhhccCC--CCcEEEEecccCCCCCCCC
Q 008954 344 VIASLRGND-DKIRVVLNKADQVD--TQQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 344 ll~~l~~~~-~~iivVlNK~D~~~--~~~l~~~~~~l~~~l~~~~~~--~~v~~v~isa~~~~~l~~~ 406 (547)
.+..+...+ .++++|+||+|+.+ .+.+......+...+.. .+. ..+..+++||++|.++.+.
T Consensus 132 ~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~-~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 132 HAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKK-VGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred HHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHH-cCCCcccceEEEeecccccccccc
Confidence 332223233 57899999999974 33333322222211221 222 2355689999999999874
No 167
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.34 E-value=5.5e-12 Score=125.01 Aligned_cols=66 Identities=20% Similarity=0.284 Sum_probs=51.5
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcC
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVD 366 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~ 366 (547)
.+.++||||..+ |...+...+..+|.+++|+|+.+ +.......+++.+...+.|+++++||+|+..
T Consensus 72 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~~IlVvda~~-g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 72 VINLLDTPGHED-----------FSEDTYRTLTAVDSAVMVIDAAK-GVEPQTRKLFEVCRLRGIPIITFINKLDREG 137 (267)
T ss_pred EEEEEECCCchH-----------HHHHHHHHHHHCCEEEEEEECCC-CccHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence 789999999853 22234455789999999999986 5566666777777777899999999999864
No 168
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.34 E-value=9.4e-12 Score=109.60 Aligned_cols=131 Identities=23% Similarity=0.280 Sum_probs=85.9
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|.++|+.|+|||||+++|.|.+. .. ..|.....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~---~~---~KTq~i~~---------------------------------------- 36 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI---RY---KKTQAIEY---------------------------------------- 36 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC---Cc---CccceeEe----------------------------------------
Confidence 599999999999999999999884 11 11111110
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCC--CCHHHHHHHHHHhCCCCeEEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLD--ISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~--~~~~~~~ll~~l~~~~~~iivV 358 (547)
.=.+|||||-.--... +-........+||+|+++.|+++.. ..+.+... ...|+|-|
T Consensus 37 --------~~~~IDTPGEyiE~~~-------~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~------f~~pvIGV 95 (143)
T PF10662_consen 37 --------YDNTIDTPGEYIENPR-------FYHALIVTAQDADVVLLLQDATEPRSVFPPGFASM------FNKPVIGV 95 (143)
T ss_pred --------cccEEECChhheeCHH-------HHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcc------cCCCEEEE
Confidence 1135999997632111 1112333468999999999998732 23333322 25799999
Q ss_pred eccCCCc-ChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQV-DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~-~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+||+|+. +.+++.+....+ +..+..++ +.+|+.+|+|+++
T Consensus 96 ITK~Dl~~~~~~i~~a~~~L-----~~aG~~~i--f~vS~~~~eGi~e 136 (143)
T PF10662_consen 96 ITKIDLPSDDANIERAKKWL-----KNAGVKEI--FEVSAVTGEGIEE 136 (143)
T ss_pred EECccCccchhhHHHHHHHH-----HHcCCCCe--EEEECCCCcCHHH
Confidence 9999998 455666555444 22344554 8999999999875
No 169
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.33 E-value=1e-11 Score=116.81 Aligned_cols=147 Identities=16% Similarity=0.223 Sum_probs=87.6
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||+|.+++..+ .. ...|+.+....... ..+.+ .
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~--~~-~~~~t~~~~~~~~~-----------------~~~~~-----~--------- 47 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEF--SE-STKSTIGVDFKIKT-----------------VYIEN-----K--------- 47 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC-CCCCceeeEEEEEE-----------------EEECC-----E---------
Confidence 699999999999999999998875 21 12233222111000 00000 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~iiv 357 (547)
.-.+.++||||... +......++..+|++++++|.++...-.....++..+. ....|+++
T Consensus 48 ------~~~~~i~Dt~g~~~-----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~iv 110 (188)
T cd04125 48 ------IIKLQIWDTNGQER-----------FRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVI 110 (188)
T ss_pred ------EEEEEEEECCCcHH-----------HHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 02678999999642 12245666899999999999987432233333443333 33578999
Q ss_pred EeccCCCcChHHHHHHH-HHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRVY-GALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~-~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+.....+.... ..+ ....+ +..+.+||+++.++++
T Consensus 111 v~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~evSa~~~~~i~~ 152 (188)
T cd04125 111 VANKSDLVNNKVVDSNIAKSF----CDSLN---IPFFETSAKQSINVEE 152 (188)
T ss_pred EEECCCCcccccCCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 99999987432211111 111 11122 2457999999988864
No 170
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=9.5e-12 Score=119.01 Aligned_cols=122 Identities=20% Similarity=0.349 Sum_probs=80.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
-.|+++|.+|+|||||||+|++.+. .+++..+.++++..- . -.+..+
T Consensus 40 vnvLi~G~TG~GKSSliNALF~~~~--~~v~~vg~~t~~~~~--------------------~--~~~~~~--------- 86 (296)
T COG3596 40 VNVLLMGATGAGKSSLINALFQGEV--KEVSKVGVGTDITTR--------------------L--RLSYDG--------- 86 (296)
T ss_pred eeEEEecCCCCcHHHHHHHHHhccC--ceeeecccCCCchhh--------------------H--Hhhccc---------
Confidence 4577999999999999999997665 566554444332210 0 000111
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh--CCCCeEEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR--GNDDKIRV 357 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~--~~~~~iiv 357 (547)
+.++|+||||+.++...-- .+.+..+..+.+.|++++++++.+...+- +.++++.+. ..++++++
T Consensus 87 --------~~l~lwDtPG~gdg~~~D~----~~r~~~~d~l~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~~~~~~i~ 153 (296)
T COG3596 87 --------ENLVLWDTPGLGDGKDKDA----EHRQLYRDYLPKLDLVLWLIKADDRALGT-DEDFLRDVIILGLDKRVLF 153 (296)
T ss_pred --------cceEEecCCCcccchhhhH----HHHHHHHHHhhhccEEEEeccCCCccccC-CHHHHHHHHHhccCceeEE
Confidence 4899999999998632111 13446677789999999999998744432 233444432 34589999
Q ss_pred EeccCCCcCh
Q 008954 358 VLNKADQVDT 367 (547)
Q Consensus 358 VlNK~D~~~~ 367 (547)
++|.+|...+
T Consensus 154 ~VtQ~D~a~p 163 (296)
T COG3596 154 VVTQADRAEP 163 (296)
T ss_pred EEehhhhhcc
Confidence 9999998633
No 171
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.33 E-value=3.8e-12 Score=117.36 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=85.3
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|+|++... .....|+....... ... ..+ ..
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~------------~~~------~~~----~~--------- 47 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF---PTEYVPTVFDNYSA------------TVT------VDG----KQ--------- 47 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCCCCCceeeeeEE------------EEE------ECC----EE---------
Confidence 689999999999999999999874 22222222111100 000 000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHH-HHHHHHHHhC--CCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDE-FKRVIASLRG--NDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~-~~~ll~~l~~--~~~~iiv 357 (547)
..+.++||||..... .........+|++++++|..+...-.. ...++..+.. .+.|+++
T Consensus 48 -------~~l~~~D~~g~~~~~-----------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iv 109 (171)
T cd00157 48 -------VNLGLWDTAGQEEYD-----------RLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIIL 109 (171)
T ss_pred -------EEEEEEeCCCccccc-----------ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 268899999986421 112223578999999999876221111 1223333332 2589999
Q ss_pred EeccCCCcChHHHHHH--------HHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRV--------YGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~--------~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+......... ............+. ...+.+||+++.++.+
T Consensus 110 v~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~ 163 (171)
T cd00157 110 VGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA--IGYMECSALTQEGVKE 163 (171)
T ss_pred EEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC--eEEEEeecCCCCCHHH
Confidence 9999999765432110 00000111122222 2457899999998864
No 172
>PLN03118 Rab family protein; Provisional
Probab=99.33 E-value=8e-12 Score=119.95 Aligned_cols=149 Identities=17% Similarity=0.206 Sum_probs=87.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+|+|.+|+|||||+|+|++..+ ...+ |+++....+.. ..+.+ +.
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~--~~~~--~t~~~~~~~~~-----------------~~~~~----~~------ 61 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV--EDLA--PTIGVDFKIKQ-----------------LTVGG----KR------ 61 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC--CCcC--CCceeEEEEEE-----------------EEECC----EE------
Confidence 346899999999999999999998775 3332 23222111000 00000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHH-HHh----CCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIA-SLR----GND 352 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~-~l~----~~~ 352 (547)
..+.|+||||...- ......++..+|++|+++|..+...-+...+++. .+. ..+
T Consensus 62 ----------~~l~l~Dt~G~~~~-----------~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~ 120 (211)
T PLN03118 62 ----------LKLTIWDTAGQERF-----------RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQD 120 (211)
T ss_pred ----------EEEEEEECCCchhh-----------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 26889999997531 2234455789999999999986322222222222 121 235
Q ss_pred CeEEEEeccCCCcChHHHHHH-HHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l~~~-~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.|+++|.||+|+....++... ...+ .... ....+.+||+++.++++
T Consensus 121 ~~~ilv~NK~Dl~~~~~i~~~~~~~~----~~~~---~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 121 CVKMLVGNKVDRESERDVSREEGMAL----AKEH---GCLFLECSAKTRENVEQ 167 (211)
T ss_pred CCEEEEEECccccccCccCHHHHHHH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 689999999998643222111 1111 1111 23457999999998875
No 173
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.33 E-value=2.9e-11 Score=116.32 Aligned_cols=110 Identities=22% Similarity=0.327 Sum_probs=71.9
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||++.+++..+ .. ..|+.+....... + +.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f--~~--~~~Tig~~~~~~~-------------------~------~~--------- 43 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF--KD--TVSTVGGAFYLKQ-------------------W------GP--------- 43 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC--CC--CCCccceEEEEEE-------------------e------eE---------
Confidence 589999999999999999998875 21 2333332211100 0 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~iiv 357 (547)
..+.|+||||...- ..+...+...+|++|+++|.++...-+.....+..+. ..+.|+++
T Consensus 44 -------~~l~iwDt~G~e~~-----------~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIl 105 (220)
T cd04126 44 -------YNISIWDTAGREQF-----------HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAV 105 (220)
T ss_pred -------EEEEEEeCCCcccc-----------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 26889999997431 1234455789999999999987332233333333332 23578999
Q ss_pred EeccCCCcC
Q 008954 358 VLNKADQVD 366 (547)
Q Consensus 358 VlNK~D~~~ 366 (547)
|.||+|+..
T Consensus 106 VgNK~DL~~ 114 (220)
T cd04126 106 VGNKLDLTE 114 (220)
T ss_pred EEECccccc
Confidence 999999865
No 174
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.32 E-value=8e-12 Score=113.62 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=86.3
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|++++... .....|++........ .+.+ ..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~---~~~~~~~~~~~~~~~~------------------~~~~----~~--------- 46 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF---VEEYDPTIEDSYRKTI------------------VVDG----ET--------- 46 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC---CcCcCCChhHeEEEEE------------------EECC----EE---------
Confidence 489999999999999999998763 2222333331111000 0000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---C-CCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---G-NDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~-~~~~ii 356 (547)
..+.++|+||.... ......++..+|++++++|..+....++...++..+. . .+.|++
T Consensus 47 -------~~~~l~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 108 (160)
T cd00876 47 -------YTLDILDTAGQEEF-----------SAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIV 108 (160)
T ss_pred -------EEEEEEECCChHHH-----------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 26889999997531 1234455789999999999876332223333333332 2 478999
Q ss_pred EEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|.....+. ......+ .+... .+.+.+||+++.++.+
T Consensus 109 vv~nK~D~~~~~~~~~~~~~~~----~~~~~---~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 109 LVGNKCDLENERQVSKEEGKAL----AKEWG---CPFIETSAKDNINIDE 151 (160)
T ss_pred EEEECCcccccceecHHHHHHH----HHHcC---CcEEEeccCCCCCHHH
Confidence 99999999753211 1111111 11111 3447999999988764
No 175
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.32 E-value=2.5e-11 Score=132.66 Aligned_cols=65 Identities=25% Similarity=0.319 Sum_probs=50.5
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCc
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQV 365 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~ 365 (547)
.++|+||||+..- .......+..+|++++|+|+.+ +...+..+.+..+...+.|+++++||+|+.
T Consensus 72 ~i~~iDTPG~e~f-----------~~~~~~~~~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 72 GLLFIDTPGHEAF-----------TNLRKRGGALADIAILVVDINE-GFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred CEEEEECCChHHH-----------HHHHHHhHhhCCEEEEEEECCC-CCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 4799999998532 1223334678999999999987 566677777777777789999999999985
No 176
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.9e-11 Score=123.14 Aligned_cols=171 Identities=20% Similarity=0.254 Sum_probs=111.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCC-------------CCcccceeEEEEeCCCccccCCceeeec-CCCCCCC
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIG-------------PEPTTDRFVVVMSGPDERTIPGNTIAVH-ADLPFSG 265 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~-------------~~~~T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~ 265 (547)
..++++|+..+|||||+-.|+=.. -.+. ....+-.+.++++...+.+.+|.++..- ..+.-..
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~---G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDL---GEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHh---CCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 568999999999999999998433 1111 2233447788888888888888887321 1111111
Q ss_pred ccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCC------CCH
Q 008954 266 LTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLD------ISD 339 (547)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~------~~~ 339 (547)
..++|+|+||+.+--+. .-.-+..||+.+|++|+.... ...
T Consensus 85 ----------------------~~~tIiDaPGHrdFvkn-----------mItGasqAD~aVLVV~a~~~efE~g~~~~g 131 (428)
T COG5256 85 ----------------------YNFTIIDAPGHRDFVKN-----------MITGASQADVAVLVVDARDGEFEAGFGVGG 131 (428)
T ss_pred ----------------------ceEEEeeCCchHHHHHH-----------hhcchhhccEEEEEEECCCCccccccccCC
Confidence 26899999997643222 233368999999999998731 333
Q ss_pred HHHHHHHHHhCCC-CeEEEEeccCCCcC--hHHHHHHHHHHHHhhhhccCCC--CcEEEEecccCCCCCCCCC
Q 008954 340 EFKRVIASLRGND-DKIRVVLNKADQVD--TQQLMRVYGALMWSLGKVLNTP--EVVRVYIGSFNDKPINGEV 407 (547)
Q Consensus 340 ~~~~ll~~l~~~~-~~iivVlNK~D~~~--~~~l~~~~~~l~~~l~~~~~~~--~v~~v~isa~~~~~l~~~~ 407 (547)
+.++.+-..+-.| ..+|+++||+|.++ .+...++...+.. +-+.+++. ++..+++|++.|.++.+.+
T Consensus 132 QtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~-l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 132 QTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSK-LLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred chhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHH-HHHHcCCCccCCeEEecccccCCcccccC
Confidence 4444333333333 46899999999995 3334444444333 44444443 5778999999999998754
No 177
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.32 E-value=2.9e-11 Score=113.51 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=85.3
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||+|.+++..+ .....|+++..... . . . ..+ +.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~---~~~~~~t~~~~~~~-~-----------i--~----~~~----~~--------- 47 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF---PEEYVPTVFENYVT-N-----------I--Q----GPN----GK--------- 47 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC---CCCCCCeeeeeeEE-E-----------E--E----ecC----Cc---------
Confidence 699999999999999999998874 22223333221110 0 0 0 000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHH-HHHHHh--CCCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKR-VIASLR--GNDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~-ll~~l~--~~~~~iiv 357 (547)
.-.+.++||||...- ......+...+|++++++|.++...-+.... ++..+. ..+.|+++
T Consensus 48 ------~~~l~i~Dt~G~~~~-----------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 110 (187)
T cd04132 48 ------IIELALWDTAGQEEY-----------DRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIML 110 (187)
T ss_pred ------EEEEEEEECCCchhH-----------HHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 026789999996421 1233345789999999999986322222221 223332 23689999
Q ss_pred EeccCCCcChHH----H-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQ----L-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~----l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+..... + ......+ ....+.. ..+.+||++|.++.+
T Consensus 111 v~nK~Dl~~~~~~~~~v~~~~~~~~----~~~~~~~--~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 111 VGLKTDLRKDKNLDRKVTPAQAESV----AKKQGAF--AYLECSAKTMENVEE 157 (187)
T ss_pred EEeChhhhhCccccCCcCHHHHHHH----HHHcCCc--EEEEccCCCCCCHHH
Confidence 999999864321 0 0111111 1112211 347999999999875
No 178
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.32 E-value=8.7e-12 Score=115.51 Aligned_cols=150 Identities=15% Similarity=0.141 Sum_probs=85.0
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhc
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQ 281 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (547)
|+|+|.+|+|||||++.+++..+ .....|+....... ... +.+ .
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~---~~~~~~~~~~~~~~------------~~~------~~~-----~---------- 44 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF---PEDYVPTVFENYSA------------DVE------VDG-----K---------- 44 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC---CCCCCCcEEeeeeE------------EEE------ECC-----E----------
Confidence 58999999999999999999874 22222222111100 000 000 0
Q ss_pred ccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhC--CCCeEEEE
Q 008954 282 MSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRG--NDDKIRVV 358 (547)
Q Consensus 282 ~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~--~~~~iivV 358 (547)
...+.++||||...- ..........+|++|+++|.++...-+... .++..+.. .+.|+++|
T Consensus 45 -----~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 108 (174)
T smart00174 45 -----PVELGLWDTAGQEDY-----------DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILV 108 (174)
T ss_pred -----EEEEEEEECCCCccc-----------chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 026889999997531 112333468999999999987632222222 23444432 37899999
Q ss_pred eccCCCcChHH-HHHHH--------HHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQ-LMRVY--------GALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~-l~~~~--------~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.||+|+..... ..... ......+.+..+. ...+.+||+++.++++
T Consensus 109 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~ 162 (174)
T smart00174 109 GTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGA--VKYLECSALTQEGVRE 162 (174)
T ss_pred ecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCC--cEEEEecCCCCCCHHH
Confidence 99999875321 11000 0000112222222 2347899999999875
No 179
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.32 E-value=1.7e-11 Score=116.57 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=88.3
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
-..|+++|++|+|||||++.+++..+ .....|+.+....+. .. .+.+. .
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~---~~~~~~t~~~~~~~~-----------~~------~~~~~----~------- 54 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF---SGSYITTIGVDFKIR-----------TV------EINGE----R------- 54 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC---CCCcCccccceeEEE-----------EE------EECCE----E-------
Confidence 36799999999999999999998774 112223322111100 00 00000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC--CCCeEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG--NDDKIR 356 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~--~~~~ii 356 (547)
..+.|+||||... +......++..+|++++|+|.++...-+....++..+.. ...|++
T Consensus 55 ---------~~l~l~D~~G~~~-----------~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~pii 114 (199)
T cd04110 55 ---------VKLQIWDTAGQER-----------FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKV 114 (199)
T ss_pred ---------EEEEEEeCCCchh-----------HHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 2578999999642 112345567889999999999873322333344444432 357899
Q ss_pred EEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.....+. .....+ .+..+ ...+.+||++|.++.+
T Consensus 115 vVgNK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 115 LVGNKNDDPERKVVETEDAYKF----AGQMG---ISLFETSAKENINVEE 157 (199)
T ss_pred EEEECcccccccccCHHHHHHH----HHHcC---CEEEEEECCCCcCHHH
Confidence 999999987532211 111111 11122 3347899999999875
No 180
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.8e-12 Score=124.51 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=121.1
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc---------cCCceeee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT---------IPGNTIAV 257 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~---------~~g~~~~~ 257 (547)
.++++.++. .|.+.+|+|.+|||||||++++-+.+ .|+.+.+.+ +|.+... ...+.+++
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le--------~PtsG~v~v--~G~di~~l~~~~Lr~~R~~IGMIF 89 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE--------RPTSGSVFV--DGQDLTALSEAELRQLRQKIGMIF 89 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC--------CCCCceEEE--cCEecccCChHHHHHHHhhccEEe
Confidence 467777665 99999999999999999999999999 455665554 3322111 33567788
Q ss_pred cCCCCCCCccccccch-------hhhhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAF-------LSKFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
|....+...+.++|.- ..+.+......++|+.+.+-| .|..+|+ +|||+. +||+++.+|++
T Consensus 90 QhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVa-------IARALa~~P~i 162 (339)
T COG1135 90 QHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVA-------IARALANNPKI 162 (339)
T ss_pred ccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHH-------HHHHHhcCCCE
Confidence 8888888888888863 235566677788888888888 6777776 677765 99999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKADQ 364 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D~ 364 (547)
+|++ ++|.|+..+....++++.+.. .+.++++|-+-+|-
T Consensus 163 LL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V 204 (339)
T COG1135 163 LLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV 204 (339)
T ss_pred EEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH
Confidence 9999 778888888888999988864 57787777665543
No 181
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.31 E-value=2.1e-11 Score=117.19 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=50.0
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCc
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQV 365 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~ 365 (547)
.+.++||||... |...+...+..+|++++++|+.+ +......++++.+...+.|+++|+||+|++
T Consensus 72 ~i~iiDtpG~~~-----------f~~~~~~~~~~aD~~llVvD~~~-~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 72 LFNIIDTPGHVN-----------FMDEVAAALRLSDGVVLVVDVVE-GVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEECCCCcc-----------hHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 689999999864 22345556789999999999986 445555566666655678999999999986
No 182
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.31 E-value=1.8e-11 Score=116.39 Aligned_cols=149 Identities=15% Similarity=0.256 Sum_probs=88.6
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
.|+++|..|+|||||++.+....+ . ....+|.+...... ...+.+ ..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f--~-~~~~~Ti~~~~~~~-----------------~i~~~~-----~~-------- 48 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF--C-EACKSGVGVDFKIK-----------------TVELRG-----KK-------- 48 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC--C-CcCCCcceeEEEEE-----------------EEEECC-----EE--------
Confidence 589999999999999999998764 1 11122322111100 000001 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~iiv 357 (547)
..+.++||+|... |..+...+...+|++|+|+|.++...-+....++..+. ..+.|+++
T Consensus 49 -------v~l~iwDtaGqe~-----------~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piil 110 (202)
T cd04120 49 -------IRLQIWDTAGQER-----------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 110 (202)
T ss_pred -------EEEEEEeCCCchh-----------hHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 2688999999742 22345666899999999999987432233333333332 34689999
Q ss_pred EeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+....++....+. .+++... ....+.+||++|.++.+
T Consensus 111 VgNK~DL~~~~~v~~~~~~---~~a~~~~--~~~~~etSAktg~gV~e 153 (202)
T cd04120 111 VGNKLDCETDREISRQQGE---KFAQQIT--GMRFCEASAKDNFNVDE 153 (202)
T ss_pred EEECcccccccccCHHHHH---HHHHhcC--CCEEEEecCCCCCCHHH
Confidence 9999998643332211111 1111111 12347899999999875
No 183
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.31 E-value=1.8e-11 Score=112.93 Aligned_cols=149 Identities=16% Similarity=0.112 Sum_probs=84.4
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||++.+++..+ .....++.+....... ..+.+ .
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~-----~-------- 52 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKF---DTQLFHTIGVEFLNKD-----------------LEVDG-----H-------- 52 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC---CcCcCCceeeEEEEEE-----------------EEECC-----e--------
Confidence 5799999999999999999998774 2222222221111000 00000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh-------CCC
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR-------GND 352 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~-------~~~ 352 (547)
.-.+.|+||||... +......+...+|++++++|..+...-+....++..+. ..+
T Consensus 53 -------~~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 114 (170)
T cd04116 53 -------FVTLQIWDTAGQER-----------FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPES 114 (170)
T ss_pred -------EEEEEEEeCCChHH-----------HHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCC
Confidence 02678999999642 11234445789999999988775322222222322221 135
Q ss_pred CeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.|+++|.||+|+............+. +.... ...+.+||++|.++.+
T Consensus 115 ~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~--~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 115 FPFVVLGNKNDIPERQVSTEEAQAWC----RENGD--YPYFETSAKDATNVAA 161 (170)
T ss_pred CcEEEEEECccccccccCHHHHHHHH----HHCCC--CeEEEEECCCCCCHHH
Confidence 79999999999863211111122221 11221 2347899999988764
No 184
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.31 E-value=9.4e-12 Score=115.08 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=88.3
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|.+|+|||||++.+++..+ .+....||++....+. .+ .+.+ .
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f--~~~~~~~T~~~~~~~~-----------~~------~~~~-----~------- 52 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSF--SLNAYSPTIKPRYAVN-----------TV------EVYG-----Q------- 52 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCC--CcccCCCccCcceEEE-----------EE------EECC-----e-------
Confidence 46799999999999999999999875 2123344443211100 00 0001 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC-CCCeEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG-NDDKIRV 357 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~-~~~~iiv 357 (547)
...+.++||+|..... .....+..++|++|+++|+++...-+...++++.+.. .+.|+++
T Consensus 53 --------~~~l~~~d~~g~~~~~-----------~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~ii 113 (169)
T cd01892 53 --------EKYLILREVGEDEVAI-----------LLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLF 113 (169)
T ss_pred --------EEEEEEEecCCccccc-----------ccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEE
Confidence 0257789999875321 1223345899999999999773222222344444432 3689999
Q ss_pred EeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+....+. ......+ .+.++...+ +.+||.++.++.+
T Consensus 114 v~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~--~~~Sa~~~~~v~~ 156 (169)
T cd01892 114 VAAKADLDEQQQRYEVQPDEF----CRKLGLPPP--LHFSSKLGDSSNE 156 (169)
T ss_pred EEEcccccccccccccCHHHH----HHHcCCCCC--EEEEeccCccHHH
Confidence 9999998643211 0111111 222333333 6899999998764
No 185
>PLN03110 Rab GTPase; Provisional
Probab=99.31 E-value=2.1e-11 Score=117.49 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=91.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+++|++|+|||||++.|++..+ .....|+.+...... .+.+.+. .
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~---~~~~~~t~g~~~~~~-----------------~v~~~~~----~------ 60 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEF---CLESKSTIGVEFATR-----------------TLQVEGK----T------ 60 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeEEEEEE-----------------EEEECCE----E------
Confidence 346899999999999999999998874 222233332211100 0000010 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ 354 (547)
..+.|+||||... +......++..+|++|+++|..+...-+....++..+. ..+.|
T Consensus 61 ----------~~l~l~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p 119 (216)
T PLN03110 61 ----------VKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV 119 (216)
T ss_pred ----------EEEEEEECCCcHH-----------HHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe
Confidence 2688999999642 12345566789999999999976433233334444443 34689
Q ss_pred EEEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+....++.. ....+ .... ..+.+.+||++|.++++
T Consensus 120 iiiv~nK~Dl~~~~~~~~~~~~~l----~~~~---~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 120 IMMAGNKSDLNHLRSVAEEDGQAL----AEKE---GLSFLETSALEATNVEK 164 (216)
T ss_pred EEEEEEChhcccccCCCHHHHHHH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 999999999864322111 11111 2212 24458999999998864
No 186
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.31 E-value=2.5e-11 Score=113.21 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=86.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||++.+++..+ .....|++....... ..+.+. .
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~---~~~~~~t~~~~~~~~------------------~~~~~~----~-------- 48 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF---VESYYPTIENTFSKI------------------IRYKGQ----D-------- 48 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---ccccCcchhhhEEEE------------------EEECCE----E--------
Confidence 3699999999999999999998773 222333332111100 000000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~i 355 (547)
..+.++||||.... ......+...+|.+++++|..+...-+....++..+ ...+.|+
T Consensus 49 --------~~~~l~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 109 (180)
T cd04137 49 --------YHLEIVDTAGQDEY-----------SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI 109 (180)
T ss_pred --------EEEEEEECCChHhh-----------HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 25789999997531 123345578899999999987632222233333333 2346799
Q ss_pred EEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+....++.. ....+ .+... ...+.+||+++.++.+
T Consensus 110 ilv~NK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gv~~ 153 (180)
T cd04137 110 VLVGNKSDLHTQRQVSTEEGKEL----AESWG---AAFLESSARENENVEE 153 (180)
T ss_pred EEEEEchhhhhcCccCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 99999999864322111 11111 11112 3457899999988764
No 187
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.30 E-value=1.8e-11 Score=113.49 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=87.4
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||++.+.+..+ . ....|+.+..... .. .+.+ ..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f--~-~~~~~t~~~~~~~------------~~------~~~~----~~-------- 49 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF--P-DYHDPTIEDAYKQ------------QA------RIDN----EP-------- 49 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--C-CCcCCcccceEEE------------EE------EECC----EE--------
Confidence 4699999999999999999998775 1 1122333211110 00 0000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHH---HHHHh-CCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRV---IASLR-GNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~l---l~~l~-~~~~~i 355 (547)
..+.++||||... +..+...++..+|++++++|.++...-....++ +.... ..+.|+
T Consensus 50 --------~~l~i~Dt~G~~~-----------~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pi 110 (172)
T cd04141 50 --------ALLDILDTAGQAE-----------FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPL 110 (172)
T ss_pred --------EEEEEEeCCCchh-----------hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCE
Confidence 2578999999743 122344557899999999998874322333332 33332 246899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+....++...... .+.+.. ....+.+||++|.++++
T Consensus 111 ilvgNK~Dl~~~~~v~~~~~~---~~a~~~---~~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 111 VLVGNKVDLESQRQVTTEEGR---NLAREF---NCPFFETSAALRHYIDD 154 (172)
T ss_pred EEEEEChhhhhcCccCHHHHH---HHHHHh---CCEEEEEecCCCCCHHH
Confidence 999999998643222111111 112222 23447899999998875
No 188
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.30 E-value=1.5e-11 Score=120.28 Aligned_cols=128 Identities=20% Similarity=0.253 Sum_probs=79.4
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
.....|+|+|++|+|||||+|+|+|... ..++..+.+++....... .+.+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~--~~v~~~~~~T~~~~~~~~-----------------~~~g----------- 78 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERK--AATSAFQSETLRVREVSG-----------------TVDG----------- 78 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCC--cccCCCCCceEEEEEEEE-----------------EECC-----------
Confidence 3457899999999999999999999986 666655433332221000 0111
Q ss_pred hhhhcccccccccceEEcCCCCCChhh-hhhhcccChHHHHHHHh--hcCCeEEEEecCCCCCCCHHHHHHHHHHhCC-C
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEK-QRTQRTYDFTGVISWFA--AKCDLILLLFDPHKLDISDEFKRVIASLRGN-D 352 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~-~~~~~~~~~~~~~~~~~--~~aD~illv~d~~~~~~~~~~~~ll~~l~~~-~ 352 (547)
..+.+|||||+.+... ....+. .......++ ...|+++++...........+..+++.+... +
T Consensus 79 -----------~~i~vIDTPGl~~~~~~~~~~~~--~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG 145 (249)
T cd01853 79 -----------FKLNIIDTPGLLESVMDQRVNRK--ILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFG 145 (249)
T ss_pred -----------eEEEEEECCCcCcchhhHHHHHH--HHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 3789999999987521 111111 111222233 3678999885443334455666777766542 2
Q ss_pred ----CeEEEEeccCCCcCh
Q 008954 353 ----DKIRVVLNKADQVDT 367 (547)
Q Consensus 353 ----~~iivVlNK~D~~~~ 367 (547)
.++++|+||+|...+
T Consensus 146 ~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 146 PSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred hhhHhCEEEEEeCCccCCC
Confidence 469999999999744
No 189
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.30 E-value=2.9e-11 Score=116.03 Aligned_cols=149 Identities=17% Similarity=0.232 Sum_probs=88.7
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||+|.+++..+ .... .|+.+...... .+.+. .+ .
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~--~~~~-~~ti~~d~~~~-----------~i~~~-----~~-----~-------- 50 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRF--AEVS-DPTVGVDFFSR-----------LIEIE-----PG-----V-------- 50 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCC-CceeceEEEEE-----------EEEEC-----CC-----C--------
Confidence 4699999999999999999998875 3322 23332211100 00000 00 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~~i 355 (547)
...+.++||||... +......++.++|++++++|.++...-+...+++..+. ....++
T Consensus 51 -------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~i 112 (211)
T cd04111 51 -------RIKLQLWDTAGQER-----------FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVF 112 (211)
T ss_pred -------EEEEEEEeCCcchh-----------HHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeE
Confidence 02688999999642 12245566799999999999987432233333343332 234678
Q ss_pred EEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+....++. .....+ .+..+ +..+.+||++|.++++
T Consensus 113 ilvgNK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~e~Sak~g~~v~e 156 (211)
T cd04111 113 ILVGHKCDLESQRQVTREEAEKL----AKDLG---MKYIETSARTGDNVEE 156 (211)
T ss_pred EEEEEccccccccccCHHHHHHH----HHHhC---CEEEEEeCCCCCCHHH
Confidence 9999999987532211 111112 22222 3457899999998875
No 190
>PRK12739 elongation factor G; Reviewed
Probab=99.30 E-value=1e-11 Score=139.26 Aligned_cols=131 Identities=21% Similarity=0.250 Sum_probs=86.1
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+|+|+.|+|||||+|+|+...-.....+... .. ..+++.......+|+++.. ...+.+.+
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~--~~-~~~~D~~~~E~~rgiti~~~~~~~~~~~------------- 72 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVH--DG-AATMDWMEQEQERGITITSAATTCFWKG------------- 72 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcccccccc--CC-ccccCCChhHhhcCCCccceeEEEEECC-------------
Confidence 4699999999999999999986431001111100 00 1111222222344555411 11122222
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
.+++|+||||+.+ |...+...+..+|++++|+|+.+ +...++..++..+...+.|++++
T Consensus 73 ---------~~i~liDTPG~~~-----------f~~e~~~al~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~~~p~iv~ 131 (691)
T PRK12739 73 ---------HRINIIDTPGHVD-----------FTIEVERSLRVLDGAVAVFDAVS-GVEPQSETVWRQADKYGVPRIVF 131 (691)
T ss_pred ---------EEEEEEcCCCHHH-----------HHHHHHHHHHHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEE
Confidence 3799999999853 22235566789999999999987 67778888999888889999999
Q ss_pred eccCCCcCh
Q 008954 359 LNKADQVDT 367 (547)
Q Consensus 359 lNK~D~~~~ 367 (547)
+||+|+...
T Consensus 132 iNK~D~~~~ 140 (691)
T PRK12739 132 VNKMDRIGA 140 (691)
T ss_pred EECCCCCCC
Confidence 999999853
No 191
>PLN03108 Rab family protein; Provisional
Probab=99.29 E-value=2.4e-11 Score=116.52 Aligned_cols=148 Identities=12% Similarity=0.148 Sum_probs=86.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+|+|++|+|||||+|.|++..+ ... ..|+.+...... . ..+.+ .
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~--~~~-~~~ti~~~~~~~-----------~------i~~~~-----~-------- 53 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRF--QPV-HDLTIGVEFGAR-----------M------ITIDN-----K-------- 53 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CCC-CCCCccceEEEE-----------E------EEECC-----E--------
Confidence 5799999999999999999998875 222 222222111000 0 00000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ii 356 (547)
+ -.+.++||||...- ......++..+|++++++|..+.........++..+. ....|++
T Consensus 54 -----~--i~l~l~Dt~G~~~~-----------~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~pii 115 (210)
T PLN03108 54 -----P--IKLQIWDTAGQESF-----------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 115 (210)
T ss_pred -----E--EEEEEEeCCCcHHH-----------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 0 15789999996421 1234555789999999999987432232223333332 3468999
Q ss_pred EEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.....+. .....+ .+.. .++.+.+||+++.++.+
T Consensus 116 iv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 116 LIGNKCDLAHRRAVSTEEGEQF----AKEH---GLIFMEASAKTAQNVEE 158 (210)
T ss_pred EEEECccCccccCCCHHHHHHH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 999999986432111 111111 1112 23457899999998874
No 192
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.29 E-value=1e-12 Score=123.81 Aligned_cols=171 Identities=21% Similarity=0.284 Sum_probs=117.6
Q ss_pred hhhhhhhccCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-----
Q 008954 175 KPLEATYRFNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----- 247 (547)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----- 247 (547)
+.+.+. |+.+. ++++.+++ .|.++++|||||||||||+|.+.|.. +|+.+++.. .+.+.
T Consensus 8 ~~l~k~--FGGl~--Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~--------~P~~G~v~~--~G~~it~l~p 73 (250)
T COG0411 8 RGLSKR--FGGLT--AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY--------KPSSGTVIF--RGRDITGLPP 73 (250)
T ss_pred ccceee--cCCEE--EEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc--------cCCCceEEE--CCcccCCCCH
Confidence 344444 77765 77787776 89999999999999999999999988 455555443 44332
Q ss_pred --cccCCceeeecCCCCCCCccccccchhhhh-------------------hhhcccccccccceEEc----CCCCCChh
Q 008954 248 --RTIPGNTIAVHADLPFSGLTTFGGAFLSKF-------------------ECSQMSHPLLDQVTFVD----TPGVLSGE 302 (547)
Q Consensus 248 --~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~-------------------~~~~~~~~ll~~l~lvD----TPG~~~~~ 302 (547)
....|..+.+|...+|++++..+|..+... +.......+|+.+.+.+ ..|-++..
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 234588889999999999999999764321 11122334445555444 22434443
Q ss_pred hhhhhcccChHHHHHHHhhcCCeEEEEec--CCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCCCc
Q 008954 303 KQRTQRTYDFTGVISWFAAKCDLILLLFD--PHKLDISDEFKRVIASLRG-NDDKIRVVLNKADQV 365 (547)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~aD~illv~d--~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D~~ 365 (547)
.|+ ..+++++++.+|.+++++-. +.++..+++..++++.+++ .+..+++|=+.+|.+
T Consensus 154 ~qR------~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~V 213 (250)
T COG0411 154 QQR------RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV 213 (250)
T ss_pred HhH------HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHH
Confidence 343 24589999999999999944 3333444566778888876 468899998888765
No 193
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.29 E-value=1.9e-11 Score=112.66 Aligned_cols=146 Identities=18% Similarity=0.138 Sum_probs=84.2
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|||||||+|.++...+ .....|+.+...... .+. ..+ +.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~-------------~~~----~~~----~~--------- 48 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF---EKKYVATLGVEVHPL-------------DFH----TNR----GK--------- 48 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCCCCCceeeEEEEE-------------EEE----ECC----EE---------
Confidence 699999999999999999996653 111112221111000 000 000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC--CCCeEEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG--NDDKIRVV 358 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~--~~~~iivV 358 (547)
..+.++||||..... .....+...+|++|+|+|.++...-.....++..+.. .+.|+++|
T Consensus 49 -------~~l~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv 110 (166)
T cd00877 49 -------IRFNVWDTAGQEKFG-----------GLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLC 110 (166)
T ss_pred -------EEEEEEECCCChhhc-----------cccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 268899999974311 1223346789999999999863222223334444432 26899999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.||+|+.... .......+ .+. .....+.+||++|.++++
T Consensus 111 ~nK~Dl~~~~-~~~~~~~~----~~~---~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 111 GNKVDIKDRK-VKAKQITF----HRK---KNLQYYEISAKSNYNFEK 149 (166)
T ss_pred EEchhccccc-CCHHHHHH----HHH---cCCEEEEEeCCCCCChHH
Confidence 9999987322 11111111 111 223357999999999875
No 194
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.29 E-value=4.6e-12 Score=120.19 Aligned_cols=172 Identities=19% Similarity=0.230 Sum_probs=113.3
Q ss_pred chhhhhhhccCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeC-----CC
Q 008954 174 LKPLEATYRFNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSG-----PD 246 (547)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~-----~~ 246 (547)
++.+.+.|..+.....++++.++. .|.+|+|+||+|||||||+|.|.|.+ .|+.+.+.+-... +.
T Consensus 4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld--------~pt~G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD--------KPTSGEVLINGKDLTKLSEK 75 (226)
T ss_pred EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc--------CCCCceEEECCEEcCcCCHH
Confidence 344555554444435677777766 99999999999999999999999999 3444443332100 10
Q ss_pred c-c--ccCCceeeecCCCCCCCccccccchhhh----h---hhhcccccccccceEEc-----CCCCCCh-hhhhhhccc
Q 008954 247 E-R--TIPGNTIAVHADLPFSGLTTFGGAFLSK----F---ECSQMSHPLLDQVTFVD-----TPGVLSG-EKQRTQRTY 310 (547)
Q Consensus 247 ~-~--~~~g~~~~~~~~~~~~~l~~~~~~~~~~----~---~~~~~~~~ll~~l~lvD-----TPG~~~~-~~~~~~~~~ 310 (547)
. . .......++|....++.++..+|..+.- . ........+++.+.+-| .|.-+|| ++||+.
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVA--- 152 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA--- 152 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHH---
Confidence 1 1 1223456888888888999988875321 1 22333445555555553 4878887 667665
Q ss_pred ChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEec
Q 008954 311 DFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLN 360 (547)
Q Consensus 311 ~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlN 360 (547)
+||+++.+|++|+.+ +-+.+...+++..+++..+.+. +..+++|-+
T Consensus 153 ----IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH 201 (226)
T COG1136 153 ----IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201 (226)
T ss_pred ----HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 899999999999999 3334434556777888877654 666666644
No 195
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.28 E-value=2.4e-11 Score=119.16 Aligned_cols=147 Identities=17% Similarity=0.226 Sum_probs=85.5
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||++.+++..+ .....|++..+.... ..+.+ ..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f---~~~y~pTi~d~~~k~------------------~~i~~-----~~-------- 47 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF---EEQYTPTIEDFHRKL------------------YSIRG-----EV-------- 47 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC---CCCCCCChhHhEEEE------------------EEECC-----EE--------
Confidence 599999999999999999998764 222233332111100 00000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----------
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---------- 350 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---------- 350 (547)
..+.|+||+|...- ..........+|++|+|+|.++...-++...++..+..
T Consensus 48 -------~~l~I~Dt~G~~~~-----------~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~ 109 (247)
T cd04143 48 -------YQLDILDTSGNHPF-----------PAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTK 109 (247)
T ss_pred -------EEEEEEECCCChhh-----------hHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 26889999997531 11223346789999999998763222233333333321
Q ss_pred --CCCeEEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 351 --NDDKIRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 351 --~~~~iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.+.|+++|.||+|+....++. .....+ ++. ......+.+||+++.++++
T Consensus 110 ~~~~~piIivgNK~Dl~~~~~v~~~ei~~~---~~~---~~~~~~~evSAktg~gI~e 161 (247)
T cd04143 110 ENVKIPMVICGNKADRDFPREVQRDEVEQL---VGG---DENCAYFEVSAKKNSNLDE 161 (247)
T ss_pred cCCCCcEEEEEECccchhccccCHHHHHHH---HHh---cCCCEEEEEeCCCCCCHHH
Confidence 367999999999986421111 111111 111 1123457999999998875
No 196
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.28 E-value=2.4e-11 Score=112.06 Aligned_cols=147 Identities=17% Similarity=0.213 Sum_probs=86.1
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
.|+++|.+|||||||+|++++... .....|++...... .+ .+.+ ..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~---~~~~~~t~~~~~~~------------~~------~~~~----~~--------- 48 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF---IESYDPTIEDSYRK------------QV------EIDG----RQ--------- 48 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CcccCCcchheEEE------------EE------EECC----EE---------
Confidence 599999999999999999998774 22222333211110 00 0000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~ii 356 (547)
..+.++||||... |....+..+..+|.+++++|..+...-+....+...+ ...+.|++
T Consensus 49 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii 110 (168)
T cd04177 49 -------CDLEILDTAGTEQ-----------FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV 110 (168)
T ss_pred -------EEEEEEeCCCccc-----------chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE
Confidence 2678999999753 1224455578899999999987632222222222222 23478999
Q ss_pred EEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.....+.. ....+ .+.. ..++.+.+||+++.++.+
T Consensus 111 iv~nK~D~~~~~~~~~~~~~~~----~~~~--~~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 111 LVGNKADLEDDRQVSREDGVSL----SQQW--GNVPFYETSARKRTNVDE 154 (168)
T ss_pred EEEEChhccccCccCHHHHHHH----HHHc--CCceEEEeeCCCCCCHHH
Confidence 9999999875322111 11111 1111 224457999999998764
No 197
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.28 E-value=1.7e-11 Score=125.18 Aligned_cols=160 Identities=18% Similarity=0.269 Sum_probs=110.5
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....++++|.||+|||||+|.+...+ ..+.|.++||+-..+.|-+ +..
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtrad---vevqpYaFTTksL~vGH~d-----------------ykY------------ 214 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRAD---DEVQPYAFTTKLLLVGHLD-----------------YKY------------ 214 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccc---cccCCcccccchhhhhhhh-----------------hhe------------
Confidence 56889999999999999999999888 6788889998866654322 122
Q ss_pred hhhcccccccccceEEcCCCCCChh-hhhhhcccChHHHHHHHhhcCCeEEEEecCCC-CCCC-HHHHHHHHHHhC--CC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGE-KQRTQRTYDFTGVISWFAAKCDLILLLFDPHK-LDIS-DEFKRVIASLRG--ND 352 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~-~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~-~~~~-~~~~~ll~~l~~--~~ 352 (547)
..+..+||||+++.. .++.. ++ ....-++++---+|||++|-+. -+.+ .+...++..++. .+
T Consensus 215 ----------lrwQViDTPGILD~plEdrN~--IE-mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN 281 (620)
T KOG1490|consen 215 ----------LRWQVIDTPGILDRPEEDRNI--IE-MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN 281 (620)
T ss_pred ----------eeeeecCCccccCcchhhhhH--HH-HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC
Confidence 268899999999851 11111 11 1223444555566777777543 2333 233566666664 37
Q ss_pred CeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+|+||+|...++++.+.-.+++..+. ....++.+-.|+....|+.+
T Consensus 282 K~~IlvlNK~D~m~~edL~~~~~~ll~~~~---~~~~v~v~~tS~~~eegVm~ 331 (620)
T KOG1490|consen 282 KVTILVLNKIDAMRPEDLDQKNQELLQTII---DDGNVKVVQTSCVQEEGVMD 331 (620)
T ss_pred CceEEEeecccccCccccCHHHHHHHHHHH---hccCceEEEecccchhceee
Confidence 899999999999988777776666654433 33456668899999999886
No 198
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.27 E-value=2e-11 Score=111.92 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=87.0
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||++.+++..+ .....|+.+...... . ..+.+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~---~~~~~~t~~~~~~~~-----------~------~~~~~~-------------- 47 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF---HSSHISTIGVDFKMK-----------T------IEVDGI-------------- 47 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEEE-----------E------EEECCE--------------
Confidence 589999999999999999998775 222233333211100 0 000010
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~iiv 357 (547)
...+.++||||...- ......+...+|++++++|..+...-++...++..+. ..+.|+++
T Consensus 48 ------~~~l~i~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iil 110 (161)
T cd04117 48 ------KVRIQIWDTAGQERY-----------QTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKIL 110 (161)
T ss_pred ------EEEEEEEeCCCcHhH-----------HhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 026789999996421 1234445789999999999876332233334444332 23679999
Q ss_pred EeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+....++....+.. +.+... ...+.+||++|.++++
T Consensus 111 vgnK~Dl~~~~~v~~~~~~~---~~~~~~---~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 111 IGNKADEEQKRQVGDEQGNK---LAKEYG---MDFFETSACTNSNIKE 152 (161)
T ss_pred EEECcccccccCCCHHHHHH---HHHHcC---CEEEEEeCCCCCCHHH
Confidence 99999986433221111111 122222 2347899999988764
No 199
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.26 E-value=3.3e-11 Score=111.37 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=84.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|++|+|||||++++++..+ +....++.+..... .. ..+.+- .
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~-----------~~------~~~~~~----~-------- 50 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF---PERTEATIGVDFRE-----------RT------VEIDGE----R-------- 50 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---CCccccceeEEEEE-----------EE------EEECCe----E--------
Confidence 4699999999999999999998774 11122222110000 00 000000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~~i 355 (547)
..+.++||||...-. ..+...+..++|++++++|.++...-.....++..+. ..+.|+
T Consensus 51 --------~~~~i~Dt~G~~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 112 (170)
T cd04115 51 --------IKVQLWDTAGQERFR----------KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPR 112 (170)
T ss_pred --------EEEEEEeCCChHHHH----------HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCE
Confidence 268899999964211 0134445789999999999987433233334443333 236899
Q ss_pred EEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~ 404 (547)
++|.||+|+....++.. ....+ .+... ...+.+||+++.+..
T Consensus 113 iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~e~Sa~~~~~~~ 155 (170)
T cd04115 113 ILVGNKCDLREQIQVPTDLAQRF----ADAHS---MPLFETSAKDPSEND 155 (170)
T ss_pred EEEEECccchhhcCCCHHHHHHH----HHHcC---CcEEEEeccCCcCCC
Confidence 99999999864332211 11111 12221 334689999954433
No 200
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.26 E-value=3e-11 Score=111.00 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=81.7
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||++++++... . ....|++...... ... +.+ ..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~-~~~~~t~~~~~~~------------~~~------~~~----~~--------- 46 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--I-GEYDPNLESLYSR------------QVT------IDG----EQ--------- 46 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--c-cccCCChHHhceE------------EEE------ECC----EE---------
Confidence 389999999999999999987653 1 1112222111000 000 000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHH---HHHh--CCCCeE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVI---ASLR--GNDDKI 355 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll---~~l~--~~~~~i 355 (547)
..+.++||||..... .......+..+|++++++|.++...-+....++ .... ..+.|+
T Consensus 47 -------~~~~i~D~~g~~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi 109 (165)
T cd04146 47 -------VSLEILDTAGQQQAD----------TEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPV 109 (165)
T ss_pred -------EEEEEEECCCCcccc----------cchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 257899999986310 012334467899999999998732222222233 3322 336899
Q ss_pred EEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCC-CCCC
Q 008954 356 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDK-PING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~-~l~~ 405 (547)
++|.||+|+.....+.. ....+ .+..+ ...+.+||+++. ++.+
T Consensus 110 ilv~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 110 ILVGNKADLLHYRQVSTEEGEKL----ASELG---CLFFEVSAAEDYDGVHS 154 (165)
T ss_pred EEEEECCchHHhCccCHHHHHHH----HHHcC---CEEEEeCCCCCchhHHH
Confidence 99999999853321111 11111 11122 234789999984 6654
No 201
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.26 E-value=2.3e-11 Score=117.62 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=83.9
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccc--eeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTD--RFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~--~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
+|+++|.+|+|||||++.+++..+ . ....++|. .+... ++. +.+ +.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~--~-~~~~~~t~~~~~~~~------------~i~------~~~----~~------- 49 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEY--D-DHAYDASGDDDTYER------------TVS------VDG----EE------- 49 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCc--C-ccCcCCCccccceEE------------EEE------ECC----EE-------
Confidence 699999999999999999987653 1 11111111 11100 000 000 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhh-cCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCC
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAA-KCDLILLLFDPHKLDISDEFKRVIASLRG----NDD 353 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~-~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~ 353 (547)
..+.++||||... . ....+.. .+|++++|+|.++...-+...+++..+.. .+.
T Consensus 50 ---------~~l~i~Dt~G~~~----~---------~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~ 107 (221)
T cd04148 50 ---------STLVVIDHWEQEM----W---------TEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDR 107 (221)
T ss_pred ---------EEEEEEeCCCcch----H---------HHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2688999999861 0 1112234 89999999999874322223344444432 368
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|.||+|+....++....+. .+....+ ...+++||.++.++++
T Consensus 108 piilV~NK~Dl~~~~~v~~~~~~---~~a~~~~---~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 108 PIILVGNKSDLARSREVSVQEGR---ACAVVFD---CKFIETSAGLQHNVDE 153 (221)
T ss_pred CEEEEEEChhccccceecHHHHH---HHHHHcC---CeEEEecCCCCCCHHH
Confidence 99999999998654322111110 1122222 2347899999999875
No 202
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.26 E-value=5.7e-11 Score=120.28 Aligned_cols=163 Identities=25% Similarity=0.309 Sum_probs=114.4
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCcee-eecCCCCCCCccccccchhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTI-AVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.||||.+--.|||||+..|+.+.- .....+....| +|++.+.....|+++ .-.+...|.+
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSG--tf~~~e~v~ER---vMDSnDlEkERGITILaKnTav~~~~-------------- 67 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSG--TFREREEVAER---VMDSNDLEKERGITILAKNTAVNYNG-------------- 67 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhcc--ccccccchhhh---hcCccchhhhcCcEEEeccceeecCC--------------
Confidence 499999999999999999997762 22222222222 556666666778887 4455566666
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
..++++||||+.+-. +.+...+.-.|.+++++||.. +..++.+.+++..-+.+.+-|+|+
T Consensus 68 --------~~INIvDTPGHADFG-----------GEVERvl~MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~gL~PIVVv 127 (603)
T COG1217 68 --------TRINIVDTPGHADFG-----------GEVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALALGLKPIVVI 127 (603)
T ss_pred --------eEEEEecCCCcCCcc-----------chhhhhhhhcceEEEEEEccc-CCCCchhhhHHHHHHcCCCcEEEE
Confidence 389999999997631 233444678899999999998 666777888877767788889999
Q ss_pred ccCCCcC--hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCC
Q 008954 360 NKADQVD--TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKP 402 (547)
Q Consensus 360 NK~D~~~--~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~ 402 (547)
||+|..+ ++++....-.++..|+..-..-+++.+|.|+..|..
T Consensus 128 NKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a 172 (603)
T COG1217 128 NKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTA 172 (603)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCcee
Confidence 9999975 444444333455555544333456778999999874
No 203
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.25 E-value=2.4e-11 Score=113.10 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=87.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||++.+.+..+ .....|+.+...... . .+.+ ..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f---~~~~~pt~~~~~~~~------------~------~~~~----~~-------- 48 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVT------------V------MIGG----EP-------- 48 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCceeeeeEEE------------E------EECC----EE--------
Confidence 3699999999999999999998764 222334433211100 0 0000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHH-HHHHHhC--CCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKR-VIASLRG--NDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~-ll~~l~~--~~~~ii 356 (547)
..+.|+||||...-. .....+...+|++|+++|.++...-+...+ ++..+.. .+.|++
T Consensus 49 --------~~l~i~Dt~G~~~~~-----------~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~pii 109 (175)
T cd01874 49 --------YTLGLFDTAGQEDYD-----------RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL 109 (175)
T ss_pred --------EEEEEEECCCccchh-----------hhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 267899999985321 122334679999999999876332222222 3333332 367999
Q ss_pred EEeccCCCcChHHHHHHHHHH---------HHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGAL---------MWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l---------~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+....++....... ...+++.. .....+.+||++|.++.+
T Consensus 110 lvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~--~~~~~~e~SA~tg~~v~~ 165 (175)
T cd01874 110 LVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL--KAVKYVECSALTQKGLKN 165 (175)
T ss_pred EEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh--CCcEEEEecCCCCCCHHH
Confidence 999999986543322111100 00011111 223457999999999875
No 204
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.25 E-value=1.2e-10 Score=109.01 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=85.9
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|..|+|||||++.+++..+ .....||.+...... . ..+.+- .
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f---~~~~~~T~g~~~~~~-----------~------i~~~~~----~--------- 48 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF---DEDYIQTLGVNFMEK-----------T------ISIRGT----E--------- 48 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCCCCCccceEEEEE-----------E------EEECCE----E---------
Confidence 589999999999999999998774 222234433211100 0 000010 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~~iiv 357 (547)
-.+.++||+|...- ......+..++|++++++|.++...-+...+++..+.. ...| ++
T Consensus 49 -------~~l~iwDt~G~~~~-----------~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-il 109 (182)
T cd04128 49 -------ITFSIWDLGGQREF-----------INMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-IL 109 (182)
T ss_pred -------EEEEEEeCCCchhH-----------HHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EE
Confidence 26889999997531 12334457899999999999874322333344444432 3445 68
Q ss_pred EeccCCCcC---hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVD---TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~---~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+.. .++..... .....+++..+ ...+++||++|.++++
T Consensus 110 VgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~---~~~~e~SAk~g~~v~~ 156 (182)
T cd04128 110 VGTKYDLFADLPPEEQEEIT-KQARKYAKAMK---APLIFCSTSHSINVQK 156 (182)
T ss_pred EEEchhccccccchhhhhhH-HHHHHHHHHcC---CEEEEEeCCCCCCHHH
Confidence 899999862 11111111 11112233333 2347999999999875
No 205
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.24 E-value=3e-11 Score=111.88 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=83.9
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||++.+++..+ . ....|++...... .. .+.+ .
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~-~~~~~t~~~~~~~------------~~------~~~~-----~--------- 46 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--P-EEYVPTVFDHYAV------------SV------TVGG-----K--------- 46 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--C-CCCCCceeeeeEE------------EE------EECC-----E---------
Confidence 599999999999999999998775 1 1111222111000 00 0000 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHh--CCCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLR--GNDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~--~~~~~iiv 357 (547)
...+.++||||...-. .........+|++++++|..+...-+... .++..+. ..+.|+++
T Consensus 47 ------~~~~~i~Dt~G~~~~~-----------~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piiv 109 (174)
T cd04135 47 ------QYLLGLYDTAGQEDYD-----------RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLL 109 (174)
T ss_pred ------EEEEEEEeCCCccccc-----------ccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 0257899999975421 11222357899999999987632212221 2233332 34789999
Q ss_pred EeccCCCcChHHHHHHHH---------HHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRVYG---------ALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~---------~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+.+......... .....+.+..+.. ..+.+||++|.|+++
T Consensus 110 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~e~Sa~~~~gi~~ 164 (174)
T cd04135 110 VGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAH--CYVECSALTQKGLKT 164 (174)
T ss_pred EeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCC--EEEEecCCcCCCHHH
Confidence 999999864322111000 0000112222222 247899999999875
No 206
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.24 E-value=6.6e-11 Score=124.65 Aligned_cols=105 Identities=20% Similarity=0.255 Sum_probs=66.3
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCC-CHHHHHHHHHHhCCC-CeEEEEeccCCCc
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDI-SDEFKRVIASLRGND-DKIRVVLNKADQV 365 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~-~~~~~~ll~~l~~~~-~~iivVlNK~D~~ 365 (547)
..++++||||+.. |.......+..+|++++|+|+.+ +. ..+..+.+..+...+ .++++|+||+|+.
T Consensus 80 ~~i~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~-g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 80 RRVSFVDAPGHET-----------LMATMLSGAALMDGALLVIAANE-PCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cEEEEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCC-CccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 3689999999742 22233444678999999999986 33 344445555554444 4689999999998
Q ss_pred ChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 366 DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 366 ~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+.++....+..+...+.... ...++.+++||++|.+++.
T Consensus 148 ~~~~~~~~~~~i~~~l~~~~-~~~~~ii~vSA~~g~gi~~ 186 (406)
T TIGR03680 148 SKEKALENYEEIKEFVKGTV-AENAPIIPVSALHNANIDA 186 (406)
T ss_pred CHHHHHHHHHHHHhhhhhcc-cCCCeEEEEECCCCCChHH
Confidence 76544333333321112111 1245568999999998753
No 207
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.24 E-value=4.6e-11 Score=110.76 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=84.1
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||++.+++..++ ....|+....... . ..+.+ .+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~---~~~~~t~~~~~~~------------~------~~~~~----~~-------- 48 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP---EVYVPTVFENYVA------------D------IEVDG----KQ-------- 48 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccccceEE------------E------EEECC----EE--------
Confidence 46999999999999999999987741 1122222211100 0 00000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhC--CCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRG--NDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~--~~~~ii 356 (547)
-.+.++||||...-. . .....+..+|++++++|..+...-+... .++..+.. .+.|++
T Consensus 49 --------~~l~i~Dt~G~~~~~--~---------~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~pii 109 (175)
T cd01870 49 --------VELALWDTAGQEDYD--R---------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII 109 (175)
T ss_pred --------EEEEEEeCCCchhhh--h---------ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE
Confidence 257899999974311 1 1122358999999998886522111221 12333332 368999
Q ss_pred EEeccCCCcChHHHHHHHHHH-----HH----hhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGAL-----MW----SLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l-----~~----~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+............. .+ .+.+... ....+++||++|.++++
T Consensus 110 lv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~ 165 (175)
T cd01870 110 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG--AFGYMECSAKTKEGVRE 165 (175)
T ss_pred EEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcC--CcEEEEeccccCcCHHH
Confidence 999999987543222111100 00 1111122 22347999999998875
No 208
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.24 E-value=7.7e-11 Score=124.72 Aligned_cols=105 Identities=21% Similarity=0.161 Sum_probs=70.8
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCC-eEEEEeccCCCcC
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDD-KIRVVLNKADQVD 366 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~-~iivVlNK~D~~~ 366 (547)
..++|+||||+.. |...+...+..+|++++|+|+.+.....+..+.+..+...+. ++++|+||+|+++
T Consensus 117 ~~i~~IDtPGH~~-----------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 117 RHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK 185 (460)
T ss_pred ceEeeeeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC
Confidence 4789999999732 233444557899999999999863244444555554444444 5899999999997
Q ss_pred hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCC
Q 008954 367 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 367 ~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~ 404 (547)
.+++.+.+..+...+.... ...++.+++||++|.+++
T Consensus 186 ~~~~~~~~~ei~~~l~~~~-~~~~~iipVSA~~G~nI~ 222 (460)
T PTZ00327 186 EAQAQDQYEEIRNFVKGTI-ADNAPIIPISAQLKYNID 222 (460)
T ss_pred HHHHHHHHHHHHHHHHhhc-cCCCeEEEeeCCCCCCHH
Confidence 6666555555543333222 234566899999998874
No 209
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.23 E-value=2.2e-11 Score=110.22 Aligned_cols=161 Identities=20% Similarity=0.245 Sum_probs=114.3
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCC---CccccC----CceeeecC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGP---DERTIP----GNTIAVHA 259 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~---~~~~~~----g~~~~~~~ 259 (547)
.++.+.+|. .|.++-++|++|||||||++.|++.+ .|+.+.+.+-.++- ..+.+| .+.+++|.
T Consensus 16 ~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e--------~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD 87 (223)
T COG2884 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE--------RPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQD 87 (223)
T ss_pred hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh--------cCCCceEEECCeecccccccccchhhheeeeEeee
Confidence 477777776 89999999999999999999999999 45555555422221 112222 45567888
Q ss_pred CCCCCCccccccchhh-------hhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEE
Q 008954 260 DLPFSGLTTFGGAFLS-------KFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLIL 327 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~il 327 (547)
.......+.++|.-+. ..+......++|+.+.+-+ .|-.+|+ ++|++. +|++.+.+++++|
T Consensus 88 ~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRva-------IARAiV~~P~vLl 160 (223)
T COG2884 88 FRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVA-------IARAIVNQPAVLL 160 (223)
T ss_pred ccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHH-------HHHHHccCCCeEe
Confidence 8888888888886321 2233344455666666655 5666665 777765 8999999999999
Q ss_pred EEec--CCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCC
Q 008954 328 LLFD--PHKLDISDEFKRVIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 328 lv~d--~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~ 364 (547)
.+-. ..+++.+.+..+++..+...|..+++.-+-.++
T Consensus 161 ADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l 199 (223)
T COG2884 161 ADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL 199 (223)
T ss_pred ecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH
Confidence 9833 334566778888999999999888887654443
No 210
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.23 E-value=7.8e-11 Score=129.10 Aligned_cols=165 Identities=22% Similarity=0.243 Sum_probs=93.1
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeec-CCCCCCCccccccchhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVH-ADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.++|+|+.++|||||+++|+...- ... ...... . ...........|++.... ....|... .+.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g--~i~-~~~~~~--~-~~D~~~~ErerGiTi~~~~v~~~~~~~--~g~-------- 68 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTG--AIS-EREMRE--Q-VLDSMDLERERGITIKAQAVRLNYKAK--DGE-------- 68 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC--CCc-cccccc--c-ccCCChHHHhcCCCeeeeEEEEEEEcC--CCC--------
Confidence 599999999999999999998652 211 110000 0 001111112234433111 00111000 000
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
-..+.|+||||+.+ |.......+..+|++|+|+|+.+ +.+.+....+..+...+.|+++|+
T Consensus 69 -------~~~l~liDTPG~~d-----------F~~~v~~~l~~aD~aILVvDat~-g~~~qt~~~~~~~~~~~ipiIiVi 129 (595)
T TIGR01393 69 -------TYVLNLIDTPGHVD-----------FSYEVSRSLAACEGALLLVDAAQ-GIEAQTLANVYLALENDLEIIPVI 129 (595)
T ss_pred -------EEEEEEEECCCcHH-----------HHHHHHHHHHhCCEEEEEecCCC-CCCHhHHHHHHHHHHcCCCEEEEE
Confidence 02689999999964 22234556789999999999987 455555555544445678999999
Q ss_pred ccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 360 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 360 NK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
||+|+.... ..+....+ .+.++......+++||++|.|+.+
T Consensus 130 NKiDl~~~~-~~~~~~el----~~~lg~~~~~vi~vSAktG~GI~~ 170 (595)
T TIGR01393 130 NKIDLPSAD-PERVKKEI----EEVIGLDASEAILASAKTGIGIEE 170 (595)
T ss_pred ECcCCCccC-HHHHHHHH----HHHhCCCcceEEEeeccCCCCHHH
Confidence 999986421 11111222 122222211237899999998864
No 211
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.22 E-value=2.5e-11 Score=112.60 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=85.1
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||++.+++..+ .....|++ ...... .+. +.+ ..
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~---~~~~~~t~-~~~~~~-----------~~~------~~~----~~--------- 47 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY---PTEYVPTA-FDNFSV-----------VVL------VDG----KP--------- 47 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---CCCCCCce-eeeeeE-----------EEE------ECC----EE---------
Confidence 589999999999999999998664 22222222 111100 000 000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH-HHHHHHHhC--CCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF-KRVIASLRG--NDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~-~~ll~~l~~--~~~~iiv 357 (547)
..+.++||||...-. .....++..+|++|+++|..+...-+.. ..++..+.. .+.|+++
T Consensus 48 -------~~~~i~Dt~G~~~~~-----------~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piil 109 (173)
T cd04130 48 -------VRLQLCDTAGQDEFD-----------KLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIIL 109 (173)
T ss_pred -------EEEEEEECCCChhhc-----------cccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 267899999984311 1122346899999999998863322222 223444433 3689999
Q ss_pred EeccCCCcChHHHHHH---------HHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRV---------YGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~---------~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+......... .......+.+..+.. ..+.+||++|.++++
T Consensus 110 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~--~~~e~Sa~~~~~v~~ 164 (173)
T cd04130 110 VGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGAC--EYIECSALTQKNLKE 164 (173)
T ss_pred EeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCC--eEEEEeCCCCCCHHH
Confidence 9999998643211100 000001112222222 347899999999875
No 212
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.22 E-value=4.7e-11 Score=112.51 Aligned_cols=151 Identities=21% Similarity=0.204 Sum_probs=85.3
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||++.+++..++ ....|+....... ... ..+ .+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~---~~~~~t~~~~~~~------------~i~------~~~----~~--------- 47 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP---QVYEPTVFENYVH------------DIF------VDG----LH--------- 47 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---CccCCcceeeeEE------------EEE------ECC----EE---------
Confidence 5899999999999999999987752 1112222111110 000 000 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhC--CCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRG--NDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~--~~~~iiv 357 (547)
..+.|+||||...- . .+.......+|++++++|.++...-+... .++..+.. .+.|+++
T Consensus 48 -------~~l~i~Dt~G~~~~--~---------~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piil 109 (189)
T cd04134 48 -------IELSLWDTAGQEEF--D---------RLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVL 109 (189)
T ss_pred -------EEEEEEECCCChhc--c---------ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 26889999997431 1 12223357899999999887632112221 23444432 3689999
Q ss_pred EeccCCCcChHHHHHHHHHH---------HHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRVYGAL---------MWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~~l---------~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+....+........ ...+.+.. .....+.+||++|.++++
T Consensus 110 vgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~SAk~~~~v~e 164 (189)
T cd04134 110 VALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRI--NALRYLECSAKLNRGVNE 164 (189)
T ss_pred EEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc--CCCEEEEccCCcCCCHHH
Confidence 99999997543322111100 00111111 123457899999999875
No 213
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.22 E-value=9.9e-11 Score=108.80 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=85.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||+..+++..+ .....|+....... ... +.+ ..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f---~~~~~~t~~~~~~~------------~~~------~~~----~~-------- 48 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSA------------NVM------VDG----KP-------- 48 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCcCCCcceeeeEE------------EEE------ECC----EE--------
Confidence 3699999999999999999998664 12223332211100 000 000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHH-HHHHHh--CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKR-VIASLR--GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~-ll~~l~--~~~~~ii 356 (547)
-.+.++||||...- ......+...+|++|+++|.++...-+.... ++..+. ..+.|++
T Consensus 49 --------~~l~i~Dt~G~~~~-----------~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~pii 109 (174)
T cd01871 49 --------VNLGLWDTAGQEDY-----------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII 109 (174)
T ss_pred --------EEEEEEECCCchhh-----------hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 26789999997421 1233445689999999999987432222221 233332 2368999
Q ss_pred EEeccCCCcChH-HHHHHHHH--------HHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQ-QLMRVYGA--------LMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~-~l~~~~~~--------l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.... ........ ....+.+..+ ....+.+||++|.++++
T Consensus 110 lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~ 165 (174)
T cd01871 110 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG--AVKYLECSALTQKGLKT 165 (174)
T ss_pred EEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC--CcEEEEecccccCCHHH
Confidence 999999986432 11111100 0001122122 12447899999999875
No 214
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.2e-11 Score=115.94 Aligned_cols=160 Identities=17% Similarity=0.264 Sum_probs=111.2
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc---------cCCceeee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT---------IPGNTIAV 257 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~---------~~g~~~~~ 257 (547)
.++.+.++. +|.+|+|+|++|||||||+++|.|.. .|+.+.+. .++.+... ...+.+.+
T Consensus 18 ~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~--------d~t~G~i~--~~g~~i~~~~~k~lr~~r~~iGmIf 87 (258)
T COG3638 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV--------DPTSGEIL--FNGVQITKLKGKELRKLRRDIGMIF 87 (258)
T ss_pred eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc--------CCCcceEE--ecccchhccchHHHHHHHHhceeEe
Confidence 366666655 99999999999999999999999955 34444332 23322211 23456677
Q ss_pred cCCCCCCCccccccchhhh---------------hhhhcccccccccceEEcCC----CCCCh-hhhhhhcccChHHHHH
Q 008954 258 HADLPFSGLTTFGGAFLSK---------------FECSQMSHPLLDQVTFVDTP----GVLSG-EKQRTQRTYDFTGVIS 317 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~---------------~~~~~~~~~ll~~l~lvDTP----G~~~~-~~~~~~~~~~~~~~~~ 317 (547)
+.......++.+.|....+ .+........|+.+.+.|.. +-+|| ++||+. +||
T Consensus 88 Q~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVa-------IAR 160 (258)
T COG3638 88 QQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVA-------IAR 160 (258)
T ss_pred ccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHH-------HHH
Confidence 7776677777776654221 12233445666778888843 44554 456654 999
Q ss_pred HHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHh-CCCCeEEEEeccCCCc
Q 008954 318 WFAAKCDLILLL--FDPHKLDISDEFKRVIASLR-GNDDKIRVVLNKADQV 365 (547)
Q Consensus 318 ~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~-~~~~~iivVlNK~D~~ 365 (547)
+++++|.+||-+ +.+.++..+....++++.+. +.+.++++.++-+|+.
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA 211 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLA 211 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHH
Confidence 999999999999 67777777778888887775 4578999999988875
No 215
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=9.5e-11 Score=120.89 Aligned_cols=149 Identities=23% Similarity=0.336 Sum_probs=105.2
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCc---ccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEP---TTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFL 274 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~---~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 274 (547)
..|+|.|+|+--.|||||+.+|-+..+ +...... .-+.|++ .++ .|
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V-------------------~~p-~G--------- 200 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTV-------------------TLP-SG--------- 200 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEE-------------------ecC-CC---------
Confidence 679999999999999999999998886 3221111 1122222 122 22
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK 354 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ 354 (547)
+.++|+||||+..-. +.-..-+.-+|++++|+.+.+ +..++..+.|+..+..+.|
T Consensus 201 -------------~~iTFLDTPGHaAF~-----------aMRaRGA~vtDIvVLVVAadD-GVmpQT~EaIkhAk~A~Vp 255 (683)
T KOG1145|consen 201 -------------KSITFLDTPGHAAFS-----------AMRARGANVTDIVVLVVAADD-GVMPQTLEAIKHAKSANVP 255 (683)
T ss_pred -------------CEEEEecCCcHHHHH-----------HHHhccCccccEEEEEEEccC-CccHhHHHHHHHHHhcCCC
Confidence 489999999996421 111122578899999999988 8889999999999999999
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHH---hhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMW---SLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~---~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++.+||||.... ..++++..|.. .+.++ ..++..++|||++|.+++.
T Consensus 256 iVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~--GGdVQvipiSAl~g~nl~~ 306 (683)
T KOG1145|consen 256 IVVAINKIDKPGA-NPEKVKRELLSQGIVVEDL--GGDVQVIPISALTGENLDL 306 (683)
T ss_pred EEEEEeccCCCCC-CHHHHHHHHHHcCccHHHc--CCceeEEEeecccCCChHH
Confidence 9999999998642 23344444421 11122 2467779999999998774
No 216
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.21 E-value=1.5e-10 Score=117.27 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=83.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCC-CC-C-----------CCCCCcc----cceeEEEEeCCCccccCCceeeecCCCC
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNY-PG-A-----------HIGPEPT----TDRFVVVMSGPDERTIPGNTIAVHADLP 262 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~-~~-~-----------~v~~~~~----T~~~~~i~~~~~~~~~~g~~~~~~~~~~ 262 (547)
..|+++|+.++|||||||++++.-+ |. + .++..++ ||.+.. +|..++-+...
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkf---------vP~kAvEI~~~-- 86 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKF---------VPNEAVEININ-- 86 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCcc---------ccCcceEEecc--
Confidence 4599999999999999999999932 00 2 2233222 222222 22222211110
Q ss_pred CCCccccccchhhhhhhhcccccccccceEEcCCCCCChh---hhhhhc-----------ccChHHH----HHHHhh-cC
Q 008954 263 FSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGE---KQRTQR-----------TYDFTGV----ISWFAA-KC 323 (547)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~---~~~~~~-----------~~~~~~~----~~~~~~-~a 323 (547)
.+ +-..+.|+||+|+.... ..+.++ .+.|... ++..+. ++
T Consensus 87 -~~--------------------~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhs 145 (492)
T TIGR02836 87 -EG--------------------TKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHS 145 (492)
T ss_pred -CC--------------------CcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcC
Confidence 00 01378999999998631 111111 1122222 455566 99
Q ss_pred CeEEEEe-cCCC-----CCCCHHHHHHHHHHhCCCCeEEEEeccCCCcC
Q 008954 324 DLILLLF-DPHK-----LDISDEFKRVIASLRGNDDKIRVVLNKADQVD 366 (547)
Q Consensus 324 D~illv~-d~~~-----~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~ 366 (547)
|+.|+|+ |++= -+..+...+++..|++.++|+++|+||+|-..
T Consensus 146 tIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 146 TIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYH 194 (492)
T ss_pred cEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 9999997 8851 13445567899999999999999999999543
No 217
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.21 E-value=2.5e-11 Score=112.96 Aligned_cols=150 Identities=21% Similarity=0.242 Sum_probs=92.5
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+++|+.||||||+++.|.+... . ...||.+ +.+. ...+.+
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~--~--~~~pT~g-~~~~------------------~i~~~~------------ 57 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEI--S--ETIPTIG-FNIE------------------EIKYKG------------ 57 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSE--E--EEEEESS-EEEE------------------EEEETT------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhccc--c--ccCcccc-cccc------------------eeeeCc------------
Confidence 446799999999999999999987653 1 1334333 2220 001111
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~ 353 (547)
..+.++|.+|-.... . .-+.+...+|.+|||+|+++...-.+..+.+..+.. .+.
T Consensus 58 ----------~~~~~~d~gG~~~~~-~----------~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~ 116 (175)
T PF00025_consen 58 ----------YSLTIWDLGGQESFR-P----------LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDI 116 (175)
T ss_dssp ----------EEEEEEEESSSGGGG-G----------GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTS
T ss_pred ----------EEEEEEecccccccc-c----------cceeeccccceeEEEEecccceeecccccchhhhcchhhcccc
Confidence 278999999875321 0 112235789999999999874433444444444322 378
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++++||.|..+.....++...+ .+..+.....+..+.+||.+|+|+.+
T Consensus 117 piLIl~NK~D~~~~~~~~~i~~~l--~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 117 PILILANKQDLPDAMSEEEIKEYL--GLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp EEEEEEESTTSTTSSTHHHHHHHT--TGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred eEEEEeccccccCcchhhHHHhhh--hhhhcccCCceEEEeeeccCCcCHHH
Confidence 999999999987532222222222 12222223455567899999999874
No 218
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.21 E-value=7.9e-11 Score=113.67 Aligned_cols=149 Identities=18% Similarity=0.140 Sum_probs=87.3
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+++|..|+|||||++.++...+ .....|+.+....... . . ..+ +.
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f---~~~~~~tig~~~~~~~-----------~--~----~~~----~~------ 61 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF---EKKYEPTIGVEVHPLD-----------F--F----TNC----GK------ 61 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCC---CCccCCccceeEEEEE-----------E--E----ECC----eE------
Confidence 446899999999999999999886663 1222333322111000 0 0 000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh--CCCCeE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR--GNDDKI 355 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~--~~~~~i 355 (547)
-.+.++||||...- ..+...+...+|++|+++|.++...-.....++..+. ..+.|+
T Consensus 62 ----------~~l~i~Dt~G~~~~-----------~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~pi 120 (219)
T PLN03071 62 ----------IRFYCWDTAGQEKF-----------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120 (219)
T ss_pred ----------EEEEEEECCCchhh-----------hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcE
Confidence 26889999997531 1233445789999999999887322222333444333 236899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+.......... .+ .+. ..+..+.+||++|.++.+
T Consensus 121 ilvgNK~Dl~~~~v~~~~~-~~----~~~---~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 121 VLCGNKVDVKNRQVKAKQV-TF----HRK---KNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEEEchhhhhccCCHHHH-HH----HHh---cCCEEEEcCCCCCCCHHH
Confidence 9999999985321111111 11 111 123347899999999875
No 219
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.21 E-value=1.2e-10 Score=121.35 Aligned_cols=112 Identities=20% Similarity=0.206 Sum_probs=60.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+|+|.||+|||||+|+|++.. ..++..|.||....+.-.......+...+.. ...+..+....+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~---~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~-~~~~~~~~~~~~--------- 68 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD---VEIANYPFTTIDPNVGVAYVRVECPCKELGV-KCNPRNGKCIDG--------- 68 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc---ccccCCCCcceeeeeeeeeeccCCchhhhhh-hhccccccccCC---------
Confidence 369999999999999999999988 6667777776533321000000000000000 000000000000
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCC
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPH 333 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~ 333 (547)
.....+.++||||+..+.... ++ ........+.++|++++|+|+.
T Consensus 69 -----~~~~~i~i~D~aGl~~ga~~g--~g--lg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 69 -----TRFIPVELIDVAGLVPGAHEG--RG--LGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred -----cceeeEEEEEcCCcCCCccch--hh--HHHHHHHHHHHCCEEEEEEeCC
Confidence 001268999999997653111 11 1112233389999999999986
No 220
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.20 E-value=1.1e-10 Score=111.26 Aligned_cols=115 Identities=20% Similarity=0.269 Sum_probs=67.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
+.|+++|++|+|||||++.|.+...+ .+ .+++ ...... ..... ...+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~--~t--~~s~-~~~~~~------------~~~~~--~~~~-------------- 47 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYR--ST--VTSI-EPNVAT------------FILNS--EGKG-------------- 47 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCC--Cc--cCcE-eecceE------------EEeec--CCCC--------------
Confidence 46999999999999999999987641 11 1111 111100 00000 0001
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcC-CeEEEEecCCCCC-CCHHHHHHH----HHH--hCC
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKC-DLILLLFDPHKLD-ISDEFKRVI----ASL--RGN 351 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~a-D~illv~d~~~~~-~~~~~~~ll----~~l--~~~ 351 (547)
..+.++||||...-. ......+..+ +.+|+++|+.+.. ...+..+.+ ... ...
T Consensus 48 --------~~~~l~D~pG~~~~~-----------~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~ 108 (203)
T cd04105 48 --------KKFRLVDVPGHPKLR-----------DKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKN 108 (203)
T ss_pred --------ceEEEEECCCCHHHH-----------HHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccC
Confidence 368899999986421 1223345666 9999999998731 111222222 211 124
Q ss_pred CCeEEEEeccCCCcC
Q 008954 352 DDKIRVVLNKADQVD 366 (547)
Q Consensus 352 ~~~iivVlNK~D~~~ 366 (547)
+.|+++|.||+|+..
T Consensus 109 ~~pvliv~NK~Dl~~ 123 (203)
T cd04105 109 KIPVLIACNKQDLFT 123 (203)
T ss_pred CCCEEEEecchhhcc
Confidence 789999999999874
No 221
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.20 E-value=1.1e-10 Score=123.74 Aligned_cols=171 Identities=18% Similarity=0.163 Sum_probs=102.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCC----------c-c--cceeEEEEeCCCccccCCceeeec-CCCCCCC
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPE----------P-T--TDRFVVVMSGPDERTIPGNTIAVH-ADLPFSG 265 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~----------~-~--T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~ 265 (547)
..|+++|+.++|||||+-+|+-..- . +... . . .-.+..+++...+....|+++... ..+.+.+
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g--~-i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLG--G-IDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhC--C-CcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4699999999999999999985431 1 1100 0 0 011122334434444556665321 1111111
Q ss_pred ccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCC------CH
Q 008954 266 LTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDI------SD 339 (547)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~------~~ 339 (547)
..++|+||||+.+ |...+...+..+|.+|+|+|+.+... ..
T Consensus 85 ----------------------~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~ 131 (447)
T PLN00043 85 ----------------------YYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131 (447)
T ss_pred ----------------------EEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCc
Confidence 3789999999853 33345556789999999999986211 14
Q ss_pred HHHHHHHHHhCCCCe-EEEEeccCCCcC----hHHHHHHHHHHHHhhhhcc-CCCCcEEEEecccCCCCCCCC
Q 008954 340 EFKRVIASLRGNDDK-IRVVLNKADQVD----TQQLMRVYGALMWSLGKVL-NTPEVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 340 ~~~~ll~~l~~~~~~-iivVlNK~D~~~----~~~l~~~~~~l~~~l~~~~-~~~~v~~v~isa~~~~~l~~~ 406 (547)
+..+.+..+...+.| +++++||+|+.+ .+.+.++...+...+.+.- ....++.+++||+.|.++.+.
T Consensus 132 qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~ 204 (447)
T PLN00043 132 QTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIER 204 (447)
T ss_pred hHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccccc
Confidence 556666666666775 788999999863 2234444444433333221 112456789999999999763
No 222
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.20 E-value=1.4e-10 Score=108.24 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=70.4
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||++.+++..+ +....|+....... .+ .+.+ .
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~------------~~------~~~~-----~-------- 47 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY---PETYVPTVFENYTA------------SF------EIDE-----Q-------- 47 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC---CCCcCCceEEEEEE------------EE------EECC-----E--------
Confidence 4699999999999999999998874 22223333211110 00 0000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH-HHHHHHHhC--CCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF-KRVIASLRG--NDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~-~~ll~~l~~--~~~~ii 356 (547)
.-.+.++||||...- ..+...+...+|++|+++|.++...-+.. ..++..+.. ...|++
T Consensus 48 -------~~~l~iwDt~G~~~~-----------~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~ii 109 (178)
T cd04131 48 -------RIELSLWDTSGSPYY-----------DNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVL 109 (178)
T ss_pred -------EEEEEEEECCCchhh-----------hhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEE
Confidence 026889999996421 11223346899999999998774322332 233333332 367899
Q ss_pred EEeccCCCcC
Q 008954 357 VVLNKADQVD 366 (547)
Q Consensus 357 vVlNK~D~~~ 366 (547)
+|.||+|+..
T Consensus 110 lVgnK~DL~~ 119 (178)
T cd04131 110 LVGCKTDLRT 119 (178)
T ss_pred EEEEChhhhc
Confidence 9999999853
No 223
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.19 E-value=1.7e-10 Score=116.76 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=59.9
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhc
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQ 281 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (547)
|+++|.||+|||||+|+|++.. ..+++.|.||....+.-.......|...+.... .+..+....+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~---~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~-~~~~~~~~~~~---------- 66 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD---VEIANYPFTTIDPNVGVGYVRVECPCKELGVSC-NPRYGKCIDGK---------- 66 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC---CcccCCCCccccceeEEEEEecCCCchhhhhhh-cccccccccCc----------
Confidence 5899999999999999999988 678888887744332100000000000000000 00000000000
Q ss_pred ccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCC
Q 008954 282 MSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPH 333 (547)
Q Consensus 282 ~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~ 333 (547)
-.-.+.++||||+..+..+. ++ ........+.+||++++|+|+.
T Consensus 67 ----~~v~i~l~D~aGlv~ga~~~--~g--lg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 67 ----RYVPVELIDVAGLVPGAHEG--KG--LGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred ----CcceEEEEECCCCCCCccch--hh--HHHHHHHHHHHCCEEEEEEeCC
Confidence 00258999999997542111 11 1112233489999999999886
No 224
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.19 E-value=1.1e-10 Score=128.18 Aligned_cols=166 Identities=22% Similarity=0.216 Sum_probs=94.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecC-CCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHA-DLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~-~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+|+|+.++|||||+++|+...- ....... . ..+++........|++..... .+.|... .+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg--~i~~~~~---~-~~~lD~~~~ErerGiTi~~~~v~~~~~~~--dg~------- 72 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTG--TLSEREM---K-AQVLDSMDLERERGITIKAQAVRLNYKAK--DGE------- 72 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC--CCccccc---c-cccccCchHHhhcCCcccccEEEEEEEcc--CCC-------
Confidence 3599999999999999999997541 1111100 0 011111111122333331100 0111100 000
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
-..++|+||||+.+- .......+..+|.+|+|+|+.+ +...+....+..+...+.|+++|
T Consensus 73 --------~~~lnLiDTPGh~dF-----------~~~v~~sl~~aD~aILVVDas~-gv~~qt~~~~~~~~~~~lpiIvV 132 (600)
T PRK05433 73 --------TYILNLIDTPGHVDF-----------SYEVSRSLAACEGALLVVDASQ-GVEAQTLANVYLALENDLEIIPV 132 (600)
T ss_pred --------cEEEEEEECCCcHHH-----------HHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEE
Confidence 026899999999752 2234445789999999999987 55555555565555668899999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+||+|+.... .......+ .+.++......+++||++|.|+.+
T Consensus 133 iNKiDl~~a~-~~~v~~ei----~~~lg~~~~~vi~iSAktG~GI~~ 174 (600)
T PRK05433 133 LNKIDLPAAD-PERVKQEI----EDVIGIDASDAVLVSAKTGIGIEE 174 (600)
T ss_pred EECCCCCccc-HHHHHHHH----HHHhCCCcceEEEEecCCCCCHHH
Confidence 9999986421 11222222 122222221247999999998864
No 225
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.19 E-value=1.2e-10 Score=103.55 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=61.7
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHH----HHHHHhCCCCeEEEEeccCCC
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKR----VIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~----ll~~l~~~~~~iivVlNK~D~ 364 (547)
.+.++||||..... .........+|++++++|+........... ........+.|+++|+||+|.
T Consensus 46 ~~~l~D~~g~~~~~-----------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~ 114 (157)
T cd00882 46 KLQIWDTAGQERFR-----------SLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDL 114 (157)
T ss_pred EEEEEecCChHHHH-----------hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence 78999999986532 122445689999999999987322222111 222334568899999999999
Q ss_pred cChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 365 VDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 365 ~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
............. ..........+.+|+..+.++.+
T Consensus 115 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 115 PEERVVSEEELAE-----QLAKELGVPYFETSAKTGENVEE 150 (157)
T ss_pred ccccchHHHHHHH-----HHHhhcCCcEEEEecCCCCChHH
Confidence 8654332221000 00111234457899999887653
No 226
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.19 E-value=4.7e-10 Score=105.59 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=88.9
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
-.+|+++|..|+|||||++.+.+..+ . ....|+.+..... .++. +.+ .
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~--~-~~~~~t~~~~~~~-----------~~i~------~~~-----~------- 53 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST--E-SPYGYNMGIDYKT-----------TTIL------LDG-----R------- 53 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--C-CCCCCcceeEEEE-----------EEEE------ECC-----E-------
Confidence 36799999999999999999998653 1 1111121111100 0000 000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC--CCCeEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG--NDDKIR 356 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~--~~~~ii 356 (547)
.-.+.++||||... +......+...+|++|+++|.++...-+....++..+.. .+.|++
T Consensus 54 --------~~~l~iwDt~G~~~-----------~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~pii 114 (189)
T cd04121 54 --------RVKLQLWDTSGQGR-----------FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKI 114 (189)
T ss_pred --------EEEEEEEeCCCcHH-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 02688999999853 122445567899999999999874433444445555542 368999
Q ss_pred EEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+....++. .....+ .+..+ ...+.+||++|.++++
T Consensus 115 lVGNK~DL~~~~~v~~~~~~~~----a~~~~---~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 115 LVGNRLHLAFKRQVATEQAQAY----AERNG---MTFFEVSPLCNFNITE 157 (189)
T ss_pred EEEECccchhccCCCHHHHHHH----HHHcC---CEEEEecCCCCCCHHH
Confidence 999999986421111 111111 12222 2347899999999875
No 227
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.3e-10 Score=120.96 Aligned_cols=152 Identities=22% Similarity=0.282 Sum_probs=102.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccc---eeEEEEeCCCccccCCceeeecCCCCCCCccccccchh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTD---RFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFL 274 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~---~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 274 (547)
..|.|+++|+--.|||||+.+|=+..+ +......-|. ...+.. +.. .
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~---------------~~~----~--------- 53 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPL---------------DVI----K--------- 53 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEe---------------ccC----C---------
Confidence 458999999999999999999988876 2222111111 111100 000 0
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK 354 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ 354 (547)
...++|+||||+..-. ..-.|+ ..-+|++++|+|+.+ +..++..+-+..++..+.|
T Consensus 54 ------------~~~itFiDTPGHeAFt-~mRaRG----------a~vtDIaILVVa~dD-Gv~pQTiEAI~hak~a~vP 109 (509)
T COG0532 54 ------------IPGITFIDTPGHEAFT-AMRARG----------ASVTDIAILVVAADD-GVMPQTIEAINHAKAAGVP 109 (509)
T ss_pred ------------CceEEEEcCCcHHHHH-HHHhcC----------CccccEEEEEEEccC-CcchhHHHHHHHHHHCCCC
Confidence 0479999999996421 111111 478899999999988 8888999999999999999
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHH-hhh-hccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMW-SLG-KVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~-~l~-~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++.+||+|..+. ...++..++.. .+. +.. ..++..|++||++|.|+.+
T Consensus 110 ~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~-gg~v~~VpvSA~tg~Gi~e 160 (509)
T COG0532 110 IVVAINKIDKPEA-NPDKVKQELQEYGLVPEEW-GGDVIFVPVSAKTGEGIDE 160 (509)
T ss_pred EEEEEecccCCCC-CHHHHHHHHHHcCCCHhhc-CCceEEEEeeccCCCCHHH
Confidence 9999999999853 12233333321 111 111 2346779999999999886
No 228
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.18 E-value=1.6e-10 Score=114.75 Aligned_cols=121 Identities=19% Similarity=0.292 Sum_probs=76.7
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+||||++|+|+|..+ +.+++.+.++....... ....+
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~v--~~vs~f~s~t~~~~~~~-----------------~~~~G------------- 85 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGERI--ATVSAFQSEGLRPMMVS-----------------RTRAG------------- 85 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCcceeEEEEE-----------------EEECC-------------
Confidence 36799999999999999999999987 56665443332211100 00012
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHh--hcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCC---
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA--AKCDLILLL--FDPHKLDISDEFKRVIASLRGN--- 351 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~--- 351 (547)
..+.+|||||+.+... .... .....+.++ ..+|++||| +|.. ..++.+..+++.+...
T Consensus 86 ---------~~l~VIDTPGL~d~~~--~~e~--~~~~ik~~l~~~g~DvVLyV~rLD~~--R~~~~DkqlLk~Iqe~FG~ 150 (313)
T TIGR00991 86 ---------FTLNIIDTPGLIEGGY--INDQ--AVNIIKRFLLGKTIDVLLYVDRLDAY--RVDTLDGQVIRAITDSFGK 150 (313)
T ss_pred ---------eEEEEEECCCCCchHH--HHHH--HHHHHHHHhhcCCCCEEEEEeccCcc--cCCHHHHHHHHHHHHHhhh
Confidence 3799999999997631 1111 112333332 369999999 4443 3455556666655432
Q ss_pred --CCeEEEEeccCCCcC
Q 008954 352 --DDKIRVVLNKADQVD 366 (547)
Q Consensus 352 --~~~iivVlNK~D~~~ 366 (547)
-.++++|++++|...
T Consensus 151 ~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 151 DIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hhhccEEEEEECCccCC
Confidence 356899999999774
No 229
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.18 E-value=2.2e-11 Score=127.63 Aligned_cols=172 Identities=19% Similarity=0.269 Sum_probs=119.8
Q ss_pred chhhhhhhccCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEE-----EEeCCC
Q 008954 174 LKPLEATYRFNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVV-----VMSGPD 246 (547)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~-----i~~~~~ 246 (547)
++.+.+. |+.. +++++.+|+ .|.+++++|.||+|||||++.|.|.. .|+.+.+.+ -..++.
T Consensus 11 ~~~i~K~--FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~--------~p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 11 LRGISKS--FGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY--------PPDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred eecceEE--cCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc--------cCCCceEEECCEEccCCCHH
Confidence 3445555 6554 488888877 99999999999999999999999988 344444333 123334
Q ss_pred ccccCCceeeecCCCCCCCccccccchhhhhh-----------hhcccccccccceE---EcCC-CCCCh-hhhhhhccc
Q 008954 247 ERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE-----------CSQMSHPLLDQVTF---VDTP-GVLSG-EKQRTQRTY 310 (547)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~ll~~l~l---vDTP-G~~~~-~~~~~~~~~ 310 (547)
+....|+..++|+...++.++..+|.|+.+.. .......++..+.+ .|++ |-++. ++|.
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~----- 153 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQM----- 153 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHH-----
Confidence 45567999999999999999999998865432 22333445544444 3332 44443 4443
Q ss_pred ChHHHHHHHhhcCCeEEEEecCCCC--CCCHHHHHHHHHHhCCCCeEEEEeccCCC
Q 008954 311 DFTGVISWFAAKCDLILLLFDPHKL--DISDEFKRVIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 311 ~~~~~~~~~~~~aD~illv~d~~~~--~~~~~~~~ll~~l~~~~~~iivVlNK~D~ 364 (547)
.++++++..++.++|++-..+.+ .-++...++++.++..|..+++|-+|.|.
T Consensus 154 --VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~E 207 (500)
T COG1129 154 --VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDE 207 (500)
T ss_pred --HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 45999999999999998443332 22345567788889999999999998763
No 230
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.17 E-value=2.2e-10 Score=107.21 Aligned_cols=116 Identities=18% Similarity=0.226 Sum_probs=71.2
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|..|+|||||++.+++..+ .....||....... ... +.+ .
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f---~~~~~pT~~~~~~~------------~~~------~~~-----~------- 51 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTA------------SFE------IDT-----Q------- 51 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC---CCccCCceeeeeEE------------EEE------ECC-----E-------
Confidence 35799999999999999999998774 12223333211100 000 000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH-HHHHHHHhC--CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF-KRVIASLRG--NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~-~~ll~~l~~--~~~~i 355 (547)
.-.+.++||+|... |..+...+...+|++|+++|.++...-+.. ..++..+.. .+.|+
T Consensus 52 --------~~~l~iwDtaG~e~-----------~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~pi 112 (182)
T cd04172 52 --------RIELSLWDTSGSPY-----------YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM 112 (182)
T ss_pred --------EEEEEEEECCCchh-----------hHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCE
Confidence 02688999999742 112334457899999999998773322222 233333332 25799
Q ss_pred EEEeccCCCcC
Q 008954 356 RVVLNKADQVD 366 (547)
Q Consensus 356 ivVlNK~D~~~ 366 (547)
++|.||+|+..
T Consensus 113 ilVgNK~DL~~ 123 (182)
T cd04172 113 LLVGCKSDLRT 123 (182)
T ss_pred EEEeEChhhhc
Confidence 99999999853
No 231
>PTZ00416 elongation factor 2; Provisional
Probab=99.17 E-value=1.3e-10 Score=132.35 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=87.7
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeec-CCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVH-ADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+|+|+.++|||||+++|++..- .......++++ .++...+....|+++... ....|......+
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g--~i~~~~~g~~~---~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~-------- 86 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAG--IISSKNAGDAR---FTDTRADEQERGITIKSTGISLYYEHDLEDG-------- 86 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC--CcccccCCcee---ecccchhhHhhcceeeccceEEEeecccccc--------
Confidence 3699999999999999999998652 22222222222 222222333445544211 011111000000
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
+..--..++|+||||+.+ |...+...+..+|.+|+|+|+.. +...+...+++.+...+.|++++
T Consensus 87 ----~~~~~~~i~liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~-g~~~~t~~~~~~~~~~~~p~iv~ 150 (836)
T PTZ00416 87 ----DDKQPFLINLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVE-GVCVQTETVLRQALQERIRPVLF 150 (836)
T ss_pred ----cCCCceEEEEEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCC-CcCccHHHHHHHHHHcCCCEEEE
Confidence 000003689999999964 23345566799999999999987 67777888999888888999999
Q ss_pred eccCCCc
Q 008954 359 LNKADQV 365 (547)
Q Consensus 359 lNK~D~~ 365 (547)
+||+|+.
T Consensus 151 iNK~D~~ 157 (836)
T PTZ00416 151 INKVDRA 157 (836)
T ss_pred EEChhhh
Confidence 9999997
No 232
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.4e-11 Score=121.38 Aligned_cols=88 Identities=32% Similarity=0.505 Sum_probs=85.6
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcCC
Q 008954 8 ITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAGR 87 (547)
Q Consensus 8 ~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g~ 87 (547)
.|.+|+|++++|-.-|+.+.+|-.|+|+|..++.||.++.++..+|.+||.++|.+.||-|+.+||+.+||||....+|.
T Consensus 222 pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgy 301 (737)
T KOG1955|consen 222 PWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGY 301 (737)
T ss_pred ccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhc
Q 008954 88 EITSDILK 95 (547)
Q Consensus 88 ~~~~~~~~ 95 (547)
+++..++.
T Consensus 302 pLPe~LP~ 309 (737)
T KOG1955|consen 302 PLPESLPH 309 (737)
T ss_pred CCCCCCcc
Confidence 99888876
No 233
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.16 E-value=5.7e-11 Score=114.46 Aligned_cols=160 Identities=21% Similarity=0.311 Sum_probs=95.3
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCC-ccccCCceeeec-----CC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPD-ERTIPGNTIAVH-----AD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~-~~~~~g~~~~~~-----~~ 260 (547)
+++.+.++. .|.+++|+||||+|||||+++++|.. .|..+.+.+...... .....-++.++| ..
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll--------~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~ 89 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL--------KPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRS 89 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------cCCcceEEEccccccccccCCeEEEcCcccccCCC
Confidence 377787765 88999999999999999999999977 345555443211100 000011122222 22
Q ss_pred CCCC--Cccccccc----hhhh--hhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEE
Q 008954 261 LPFS--GLTTFGGA----FLSK--FECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLIL 327 (547)
Q Consensus 261 ~~~~--~l~~~~~~----~~~~--~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~il 327 (547)
+|.. .+...|.. ++.+ ........+.|+.+.+.| .-|-+|| ++||+- +||+++.+||+++
T Consensus 90 fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~-------lARAL~~~p~lll 162 (254)
T COG1121 90 FPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVL-------LARALAQNPDLLL 162 (254)
T ss_pred CCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHH-------HHHHhccCCCEEE
Confidence 2221 11111110 0010 011233445555665555 3366665 566654 8999999999999
Q ss_pred EE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 328 LL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 328 lv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++ +.+-|.....++.++++.++..|+.+++|-+-..
T Consensus 163 LDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~ 200 (254)
T COG1121 163 LDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG 200 (254)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 99 5555544556778899999888888888766544
No 234
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.16 E-value=5.7e-10 Score=108.09 Aligned_cols=115 Identities=21% Similarity=0.234 Sum_probs=71.4
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|..|+|||||++.+++..+ .....||.+..... .+ .+.+ .
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F---~~~y~pTi~~~~~~------------~i------~~~~-----~------- 59 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTA------------GL------ETEE-----Q------- 59 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC---CCCcCCceeeeeEE------------EE------EECC-----E-------
Confidence 35799999999999999999998774 22223333211110 00 0000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH-HHHHHHHhC--CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF-KRVIASLRG--NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~-~~ll~~l~~--~~~~i 355 (547)
.-.+.|+||+|... |..+...+...+|++|+|+|.++...-+.. ..++..+.. .+.|+
T Consensus 60 --------~v~l~iwDTaG~e~-----------~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~pi 120 (232)
T cd04174 60 --------RVELSLWDTSGSPY-----------YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRI 120 (232)
T ss_pred --------EEEEEEEeCCCchh-----------hHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCE
Confidence 02688999999642 122344557899999999999873322221 223333432 36789
Q ss_pred EEEeccCCCc
Q 008954 356 RVVLNKADQV 365 (547)
Q Consensus 356 ivVlNK~D~~ 365 (547)
++|.||+|+.
T Consensus 121 ilVgNK~DL~ 130 (232)
T cd04174 121 LLIGCKTDLR 130 (232)
T ss_pred EEEEECcccc
Confidence 9999999985
No 235
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.16 E-value=2.6e-10 Score=123.18 Aligned_cols=133 Identities=20% Similarity=0.245 Sum_probs=82.1
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCc--ccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccchhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEP--TTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~--~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~ 275 (547)
-..|+|+|++++|||||+++|+-..-.....+... ++.+.++ .+........|+++.. ...+.+.+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~-~D~~~~E~~rgisi~~~~~~~~~~~---------- 79 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAK-SDWMEMEKQRGISITTSVMQFPYRD---------- 79 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceecccccccccc-CCCCHHHHhcCCcEEEEEEEEeeCC----------
Confidence 35799999999999999999974321001111110 1111111 1111111223333311 11122222
Q ss_pred hhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeE
Q 008954 276 KFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKI 355 (547)
Q Consensus 276 ~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~i 355 (547)
..+.|+||||+.+ |...+...+..+|.+|+|+|+.+ +.......+++.+...+.|+
T Consensus 80 ------------~~inliDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~~~Pi 135 (527)
T TIGR00503 80 ------------CLVNLLDTPGHED-----------FSEDTYRTLTAVDNCLMVIDAAK-GVETRTRKLMEVTRLRDTPI 135 (527)
T ss_pred ------------eEEEEEECCChhh-----------HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCE
Confidence 3789999999952 22345556789999999999987 56666677887777778999
Q ss_pred EEEeccCCCcC
Q 008954 356 RVVLNKADQVD 366 (547)
Q Consensus 356 ivVlNK~D~~~ 366 (547)
++++||+|+..
T Consensus 136 ivviNKiD~~~ 146 (527)
T TIGR00503 136 FTFMNKLDRDI 146 (527)
T ss_pred EEEEECccccC
Confidence 99999999863
No 236
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.15 E-value=4.3e-11 Score=120.38 Aligned_cols=164 Identities=21% Similarity=0.316 Sum_probs=103.8
Q ss_pred hhhhhhhccCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----c
Q 008954 175 KPLEATYRFNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----R 248 (547)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----~ 248 (547)
+.+.+. |+... ++++.+++ +|..++++||+|||||||+|.|+|.+ .|+.+.+.+ .|... -
T Consensus 7 ~~v~K~--yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe--------~~~~G~I~i--~g~~vt~l~P 72 (338)
T COG3839 7 KNVRKS--FGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE--------EPTSGEILI--DGRDVTDLPP 72 (338)
T ss_pred eeeEEE--cCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCEECCCCCh
Confidence 344444 55432 45555544 99999999999999999999999999 455555444 22222 2
Q ss_pred ccCCceeeecCCCCCCCccccccc-hhh------hhhhhcccccccccce---EEc-CCCCCCh-hhhhhhcccChHHHH
Q 008954 249 TIPGNTIAVHADLPFSGLTTFGGA-FLS------KFECSQMSHPLLDQVT---FVD-TPGVLSG-EKQRTQRTYDFTGVI 316 (547)
Q Consensus 249 ~~~g~~~~~~~~~~~~~l~~~~~~-~~~------~~~~~~~~~~ll~~l~---lvD-TPG~~~~-~~~~~~~~~~~~~~~ 316 (547)
...++++++|....|+.++.++|. |-- +.+......++.+.+. +.| .|.-+|| ++||+. ++
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVA-------la 145 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVA-------LA 145 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHH-------HH
Confidence 245788899999999999999986 311 1222233333333332 344 5777776 556655 89
Q ss_pred HHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEe
Q 008954 317 SWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVL 359 (547)
Q Consensus 317 ~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVl 359 (547)
|+++.+|+++|++ +...+.....+.+..++.+.+ .+.+++.|.
T Consensus 146 RAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVT 191 (338)
T COG3839 146 RALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVT 191 (338)
T ss_pred HHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEc
Confidence 9999999998888 322222333444555555443 355666653
No 237
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.15 E-value=4e-10 Score=118.70 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=66.2
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCC-eEEEEeccCCCcC
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDD-KIRVVLNKADQVD 366 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~-~iivVlNK~D~~~ 366 (547)
..++|+||||... |.......+..+|++++++|+.+.....+..+.+..+...+. ++++|+||+|+.+
T Consensus 85 ~~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 85 RRVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred cEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 3789999999632 222333445788999999999863224444555555554444 6899999999987
Q ss_pred hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 367 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 367 ~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.++.......+...+... ....++.+++||++|.+++.
T Consensus 154 ~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gI~~ 191 (411)
T PRK04000 154 KERALENYEQIKEFVKGT-VAENAPIIPVSALHKVNIDA 191 (411)
T ss_pred chhHHHHHHHHHHHhccc-cCCCCeEEEEECCCCcCHHH
Confidence 544333233222111111 11234568999999998753
No 238
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.14 E-value=3.1e-10 Score=107.84 Aligned_cols=198 Identities=19% Similarity=0.263 Sum_probs=109.8
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCc-eeeecC------------CCC
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGN-TIAVHA------------DLP 262 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~-~~~~~~------------~~~ 262 (547)
...+..|.++|.-|+|||||+..|.+... + ..+..+++.-++.....|-- .+.+.. .-|
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~--~------~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLH--A------KKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHh--h------ccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 44567899999999999999999997663 2 12224555444433322211 111111 122
Q ss_pred CCCccccccchhhhhh-hhccccccc--ccceEEcCCCCCChhhhhhhcccChHHHHHHHh-hcCCeEEEEecCCCCCC-
Q 008954 263 FSGLTTFGGAFLSKFE-CSQMSHPLL--DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA-AKCDLILLLFDPHKLDI- 337 (547)
Q Consensus 263 ~~~l~~~~~~~~~~~~-~~~~~~~ll--~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~-~~aD~illv~d~~~~~~- 337 (547)
-.|+.+-=|.|..++. ...+....- ....+|||||............+ ++..++ .-+-+|++++|..+-..
T Consensus 88 NGgI~TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsI----Ite~lass~ptvv~YvvDt~rs~~p 163 (366)
T KOG1532|consen 88 NGGIVTSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSI----ITETLASSFPTVVVYVVDTPRSTSP 163 (366)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccc----hHhhHhhcCCeEEEEEecCCcCCCc
Confidence 2345554455555543 122222222 35899999999865322222211 344443 46677888999765211
Q ss_pred CHHHHHHH---HHHhCCCCeEEEEeccCCCcChH---HHHHHHHHHHHhhhh---------------ccC--CCCcEEEE
Q 008954 338 SDEFKRVI---ASLRGNDDKIRVVLNKADQVDTQ---QLMRVYGALMWSLGK---------------VLN--TPEVVRVY 394 (547)
Q Consensus 338 ~~~~~~ll---~~l~~~~~~iivVlNK~D~~~~~---~l~~~~~~l~~~l~~---------------~~~--~~~v~~v~ 394 (547)
+.-..+++ ..+.+...|+|+|+||+|..+.. +.+..+++....+.+ .+. ...+..+.
T Consensus 164 ~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~ 243 (366)
T KOG1532|consen 164 TTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVG 243 (366)
T ss_pred hhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEE
Confidence 11122333 44557789999999999998653 344433333322221 000 12334579
Q ss_pred ecccCCCCCCC
Q 008954 395 IGSFNDKPING 405 (547)
Q Consensus 395 isa~~~~~l~~ 405 (547)
+||.+|.|.++
T Consensus 244 VSs~tG~G~dd 254 (366)
T KOG1532|consen 244 VSSVTGEGFDD 254 (366)
T ss_pred EecccCCcHHH
Confidence 99999999886
No 239
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.13 E-value=2.1e-10 Score=123.81 Aligned_cols=133 Identities=19% Similarity=0.269 Sum_probs=82.3
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcc--cceeEEEEeCCCccccCCceeeec-CCCCCCCccccccchhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPT--TDRFVVVMSGPDERTIPGNTIAVH-ADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~--T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~ 275 (547)
-..|+|+|+.|+|||||+++|+...-.....+.... ++..++ ++........|+++... ..+.+.+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~-~D~~~~E~~rgiSi~~~~~~~~~~~---------- 78 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHAT-SDWMEMEKQRGISVTSSVMQFPYRD---------- 78 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCcccc-CCCcHHHHhhCCceeeeeEEEEECC----------
Confidence 357999999999999999999843210011221111 111111 11111112223333111 1111211
Q ss_pred hhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeE
Q 008954 276 KFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKI 355 (547)
Q Consensus 276 ~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~i 355 (547)
..++++||||+.+ |...+...+..+|.+|+|+|+.+ +.......+++.+...+.|+
T Consensus 79 ------------~~inliDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~~iPi 134 (526)
T PRK00741 79 ------------CLINLLDTPGHED-----------FSEDTYRTLTAVDSALMVIDAAK-GVEPQTRKLMEVCRLRDTPI 134 (526)
T ss_pred ------------EEEEEEECCCchh-----------hHHHHHHHHHHCCEEEEEEecCC-CCCHHHHHHHHHHHhcCCCE
Confidence 3689999999853 22334555789999999999987 56677778888887789999
Q ss_pred EEEeccCCCcC
Q 008954 356 RVVLNKADQVD 366 (547)
Q Consensus 356 ivVlNK~D~~~ 366 (547)
++++||+|+..
T Consensus 135 iv~iNK~D~~~ 145 (526)
T PRK00741 135 FTFINKLDRDG 145 (526)
T ss_pred EEEEECCcccc
Confidence 99999999864
No 240
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.13 E-value=8.2e-11 Score=118.25 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=105.4
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc---cccCCceeeecCCCCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE---RTIPGNTIAVHADLPF 263 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~---~~~~g~~~~~~~~~~~ 263 (547)
.++++.++. .|.+++++|+||||||||+|+|+|.. .|+.+.+.+....... ........+++....+
T Consensus 19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~--------~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~ 90 (293)
T COG1131 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL--------KPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLY 90 (293)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc--------CCCceEEEEcCEeCccCHHHHHhheEEEccCCCCC
Confidence 367777666 88999999999999999999999998 3455555554322221 1123355677777788
Q ss_pred CCccccccc-hhhhhhh------hcccccccccceEEc-----CCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGA-FLSKFEC------SQMSHPLLDQVTFVD-----TPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~-~~~~~~~------~~~~~~ll~~l~lvD-----TPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..++. |..++.. ......+++.+.+-+ .-++..|+++++. ++.+++.+|+++|++
T Consensus 91 ~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~-------ia~aL~~~P~lliLDEP 163 (293)
T COG1131 91 PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLS-------IALALLHDPELLILDEP 163 (293)
T ss_pred ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHH-------HHHHHhcCCCEEEECCC
Confidence 888887775 3333322 223445666666654 2234445777765 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhCCC-CeEEEE
Q 008954 330 FDPHKLDISDEFKRVIASLRGND-DKIRVV 358 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~~~-~~iivV 358 (547)
+.+.|+....++.++++.+...+ ..+++.
T Consensus 164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlis 193 (293)
T COG1131 164 TSGLDPESRREIWELLRELAKEGGVTILLS 193 (293)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 66666555677888898888876 455544
No 241
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.12 E-value=4.8e-10 Score=104.30 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=87.4
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||++.++...+ .....||.+..... . +. +.+ .
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f---~~~~~~Ti~~~~~~-~-----------~~------~~~-----~-------- 47 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSA-N-----------VS------VDG-----N-------- 47 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC---CCCCCCcceeeeEE-E-----------EE------ECC-----E--------
Confidence 3699999999999999999998764 22223333221110 0 00 000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH-HHHHHHHhC--CCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF-KRVIASLRG--NDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~-~~ll~~l~~--~~~~ii 356 (547)
.-.+.|+||+|...- ..+...+...+|++|+++|.++...-+.. ..++..++. .+.|++
T Consensus 48 -------~v~l~i~Dt~G~~~~-----------~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~pii 109 (176)
T cd04133 48 -------TVNLGLWDTAGQEDY-----------NRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIV 109 (176)
T ss_pred -------EEEEEEEECCCCccc-----------cccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 026899999997531 11233457899999999998763322222 234444432 368999
Q ss_pred EEeccCCCcChHH----------HHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQ----------LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~----------l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.+... +....+ ..+++..+.. ..+.+||++|.++++
T Consensus 110 lvgnK~Dl~~~~~~~~~~~~~~~v~~~~~---~~~a~~~~~~--~~~E~SAk~~~nV~~ 163 (176)
T cd04133 110 LVGTKLDLRDDKQYLADHPGASPITTAQG---EELRKQIGAA--AYIECSSKTQQNVKA 163 (176)
T ss_pred EEEeChhhccChhhhhhccCCCCCCHHHH---HHHHHHcCCC--EEEECCCCcccCHHH
Confidence 9999999964321 111111 1112222211 347899999999875
No 242
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.12 E-value=1.6e-10 Score=103.86 Aligned_cols=153 Identities=20% Similarity=0.287 Sum_probs=102.6
Q ss_pred CCCCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc----cCCceeeecCCCCCCCccc
Q 008954 193 NSDFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT----IPGNTIAVHADLPFSGLTT 268 (547)
Q Consensus 193 ~~~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~----~~g~~~~~~~~~~~~~l~~ 268 (547)
+..+..|.+|+|+|++|+|||||+|.+.|.. .|..+.+.+ ++.+... ..-.++.+++...|..++.
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~--------~P~~G~i~i--~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV 88 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFE--------TPASGEILI--NGVDHTASPPAERPVSMLFQENNLFAHLTV 88 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhcc--------CCCCceEEE--cCeecCcCCcccCChhhhhhccccchhhhh
Confidence 5566789999999999999999999999999 344444333 3332211 2234557788888877777
Q ss_pred cccchhhh-------hhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCC
Q 008954 269 FGGAFLSK-------FECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHK 334 (547)
Q Consensus 269 ~~~~~~~~-------~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~ 334 (547)
..|.-+.. .+..+.....+.++.+-+ .||-+|| ++||+. ++|.++..--+++++ |.+.+
T Consensus 89 ~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvA-------LARclvR~~PilLLDEPFsALd 161 (231)
T COG3840 89 AQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVA-------LARCLVREQPILLLDEPFSALD 161 (231)
T ss_pred hhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHH-------HHHHHhccCCeEEecCchhhcC
Confidence 66653211 011122223333444443 6888887 667654 889999888888888 88888
Q ss_pred CCCCHHHHHHHHHHh-CCCCeEEEEeccC
Q 008954 335 LDISDEFKRVIASLR-GNDDKIRVVLNKA 362 (547)
Q Consensus 335 ~~~~~~~~~ll~~l~-~~~~~iivVlNK~ 362 (547)
+....++..++..+. +.+.++++|-+..
T Consensus 162 P~LR~eMl~Lv~~l~~E~~~TllmVTH~~ 190 (231)
T COG3840 162 PALRAEMLALVSQLCDERKMTLLMVTHHP 190 (231)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 888888888887765 4566777776543
No 243
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.11 E-value=1.2e-10 Score=104.41 Aligned_cols=169 Identities=18% Similarity=0.289 Sum_probs=115.5
Q ss_pred hhhhhhhccCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEE------EEeCCC
Q 008954 175 KPLEATYRFNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVV------VMSGPD 246 (547)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~------i~~~~~ 246 (547)
..+.+. |+.+. .+++.++. .|.+|.|||.+|+|||||++++--.+ .|+.+.+.+ ...+..
T Consensus 10 ~dlHK~--~G~~e--VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE--------~P~~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 10 EDLHKR--YGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--------KPSAGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred hHHHhh--cccch--hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc--------CCCCceEEECCeEEEeeeCCC
Confidence 344444 44432 56666666 78999999999999999999998777 344444333 111111
Q ss_pred cc-----------ccCCceeeecCCCCCCCccccccch--------hhhhhhhcccccccccceEEc----CCCCCChh-
Q 008954 247 ER-----------TIPGNTIAVHADLPFSGLTTFGGAF--------LSKFECSQMSHPLLDQVTFVD----TPGVLSGE- 302 (547)
Q Consensus 247 ~~-----------~~~g~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~ll~~l~lvD----TPG~~~~~- 302 (547)
.. .....+++++....|..++..+|.. ..+.+.......+|..+.+-+ .|..+++.
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQ 157 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQ 157 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchH
Confidence 00 0123345667777777777766653 234444555666777777776 78888874
Q ss_pred hhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 303 KQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
+|++ .++++++-.+++++|+ .++.++..-.+...+++.|.+.|.++++|.+-+
T Consensus 158 QQR~-------aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 158 QQRV-------AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred HHHH-------HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 4443 4899999999999999 666676667788899999999999998886654
No 244
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.11 E-value=1.2e-09 Score=103.21 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=86.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|..|+|||||++.++...+ .....||.+..... ... +.+ ..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f---~~~~~~t~~~~~~~------------~~~------~~~----~~-------- 50 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF---PKEYIPTVFDNYSA------------QTA------VDG----RT-------- 50 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC---CcCCCCceEeeeEE------------EEE------ECC----EE--------
Confidence 5799999999999999999998764 11222333211110 000 000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHH-HHHHHh--CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKR-VIASLR--GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~-ll~~l~--~~~~~ii 356 (547)
-.+.++||||...- ..+...+...+|++|+++|.++...-+.... ++..+. ..+.|++
T Consensus 51 --------~~l~i~Dt~G~e~~-----------~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~pii 111 (191)
T cd01875 51 --------VSLNLWDTAGQEEY-----------DRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPIL 111 (191)
T ss_pred --------EEEEEEECCCchhh-----------hhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE
Confidence 26889999998531 1234445789999999999877432222222 223232 2368999
Q ss_pred EEeccCCCcChHHHHHHHHH---------HHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~---------l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+............ ....+++... ....+.+||++|.++.+
T Consensus 112 lvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~--~~~~~e~SAk~g~~v~e 167 (191)
T cd01875 112 LVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH--AVKYLECSALNQDGVKE 167 (191)
T ss_pred EEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC--CcEEEEeCCCCCCCHHH
Confidence 99999998643221111100 0001111111 13447899999998875
No 245
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.11 E-value=1.3e-09 Score=103.59 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=88.8
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||++.+++..+ .....||.+....+..-. +..-+..+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f---~~~~~~Tig~~~~~k~~~-----------------~~~~~~~~~--------- 52 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQV---LGRPSWTVGCSVDVKHHT-----------------YKEGTPEEK--------- 52 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCCCcceeeeEEEEEEE-----------------EcCCCCCCc---------
Confidence 589999999999999999998874 223344443211110000 000000000
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----------
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---------- 350 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---------- 350 (547)
.-.+.|+||+|... +......+...+|++|+|+|.++...-+....++..+..
T Consensus 53 ------~~~l~IwDtaG~e~-----------~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~ 115 (202)
T cd04102 53 ------TFFVELWDVGGSES-----------VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLV 115 (202)
T ss_pred ------EEEEEEEecCCchh-----------HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhcccccccc
Confidence 02588999999853 123445567899999999998874333333344433321
Q ss_pred ------------CCCeEEEEeccCCCcChHHHHHHHHHH-HHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 351 ------------NDDKIRVVLNKADQVDTQQLMRVYGAL-MWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 351 ------------~~~~iivVlNK~D~~~~~~l~~~~~~l-~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.+.|+++|.||+|+.+........... ...+++..+.++ +.+++.....+..
T Consensus 116 ~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~---i~~~c~~~~~~~~ 180 (202)
T cd04102 116 TNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEE---INLNCTNGRLLAA 180 (202)
T ss_pred ccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCce---EEEecCCcccccC
Confidence 357999999999997542111100000 112244444444 4677877766654
No 246
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.11 E-value=1.1e-10 Score=106.60 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=99.2
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc---cccCCceeeecCCCCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE---RTIPGNTIAVHADLPF 263 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~---~~~~g~~~~~~~~~~~ 263 (547)
.++++.+|. .|.+++++|+|||||||+++.|.+.. .|+.++.++-..+... ....++.+.+.+.-.|
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL--------~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY 87 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL--------IPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY 87 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc--------cCCCceEEEeecccccChHHHhhhcceecCCcChh
Confidence 456666666 89999999999999999999999988 4555555553222211 1123344444444445
Q ss_pred CCccccccc-h------hhhhhhhcccccccccceEEc-----CCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEec
Q 008954 264 SGLTTFGGA-F------LSKFECSQMSHPLLDQVTFVD-----TPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFD 331 (547)
Q Consensus 264 ~~l~~~~~~-~------~~~~~~~~~~~~ll~~l~lvD-----TPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d 331 (547)
..++..+|. | +.+.+......++.+.+.+-| .-++..|.+|++. +|++++++|++++|+-.
T Consensus 88 ~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~-------iARAlvh~P~i~vlDEP 160 (245)
T COG4555 88 ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVA-------IARALVHDPSILVLDEP 160 (245)
T ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHH-------HHHHHhcCCCeEEEcCC
Confidence 555555554 1 233333333444444555544 2355556777765 89999999999999944
Q ss_pred --CCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 332 --PHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 332 --~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
+.+...+..+.+++.+++..+.-+++.
T Consensus 161 ~sGLDi~~~r~~~dfi~q~k~egr~viFS 189 (245)
T COG4555 161 TSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189 (245)
T ss_pred CCCccHHHHHHHHHHHHHhhcCCcEEEEe
Confidence 444444567788888988877666664
No 247
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.10 E-value=6.1e-10 Score=110.92 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=46.5
Q ss_pred hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhh
Q 008954 321 AKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSL 381 (547)
Q Consensus 321 ~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l 381 (547)
.+.|++|++++++..++.+.+.+.++.|... .++|-|+.|+|.+.++|+......++..+
T Consensus 112 ~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~lt~~el~~~k~~i~~~l 171 (281)
T PF00735_consen 112 TRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADTLTPEELQAFKQRIREDL 171 (281)
T ss_dssp --EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGGS-HHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEecccccCHHHHHHHHHHHHHHH
Confidence 4668999999987767889999999999875 88999999999999988877666665544
No 248
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.10 E-value=1.2e-10 Score=109.11 Aligned_cols=157 Identities=23% Similarity=0.307 Sum_probs=104.8
Q ss_pred cCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-------cccCCc
Q 008954 183 FNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-------RTIPGN 253 (547)
Q Consensus 183 ~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-------~~~~g~ 253 (547)
|+. .+++.+.++. .|.+|+++|+||+|||||+++|+|.. .+.++++.. .|.+. +...|+
T Consensus 13 YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~--------~~~~G~I~~--~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 13 YGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV--------RPRSGRIIF--DGEDITGLPPHERARLGI 80 (237)
T ss_pred ccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCeeEEE--CCeecCCCCHHHHHhCCe
Confidence 555 3477888777 89999999999999999999999987 233344333 33332 335588
Q ss_pred eeeecCCCCCCCccccccchhhhhhhhc--c----cccccccc----eEEc-CCCCCCh-hhhhhhcccChHHHHHHHhh
Q 008954 254 TIAVHADLPFSGLTTFGGAFLSKFECSQ--M----SHPLLDQV----TFVD-TPGVLSG-EKQRTQRTYDFTGVISWFAA 321 (547)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~----~~~ll~~l----~lvD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (547)
+.+.+...-|..++..+|..+....... . +..+++.+ ..-+ -.|..|+ ++|.+ .++++++.
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQML-------AiaRALm~ 153 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQML-------AIARALMS 153 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHH-------HHHHHHhc
Confidence 8899999999999999998654222111 0 11111111 0111 4678887 44543 48999999
Q ss_pred cCCeEEEEecC--CCCCCCHHHHHHHHHHhCC-CCeEEEE
Q 008954 322 KCDLILLLFDP--HKLDISDEFKRVIASLRGN-DDKIRVV 358 (547)
Q Consensus 322 ~aD~illv~d~--~~~~~~~~~~~ll~~l~~~-~~~iivV 358 (547)
+|.+++++-.+ ..+.+..+..++++.+++. +..+++|
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLV 193 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLV 193 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 99999998443 3344556677788888855 5567666
No 249
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.09 E-value=1.8e-09 Score=95.03 Aligned_cols=145 Identities=20% Similarity=0.250 Sum_probs=95.1
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|.++|..||||||+++.|+|.+. ..++| |-++.+- ...+.+
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~--~~i~p---t~gf~Ik------------------tl~~~~-------------- 59 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT--DTISP---TLGFQIK------------------TLEYKG-------------- 59 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc--cccCC---ccceeeE------------------EEEecc--------------
Confidence 4699999999999999999999884 33333 2233220 011112
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~i 355 (547)
.+++++|.-|..... ..-+.+.+.+|.+|||+|+++.-.-++....++.+ +-.|.|+
T Consensus 60 --------~~L~iwDvGGq~~lr-----------~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~ 120 (185)
T KOG0073|consen 60 --------YTLNIWDVGGQKTLR-----------SYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPL 120 (185)
T ss_pred --------eEEEEEEcCCcchhH-----------HHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCce
Confidence 378999998886531 22345578999999999998743333333334332 2247899
Q ss_pred EEEeccCCCcC---hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVD---TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~---~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++.||.|+.. .+++..+. .+..+........+..|+.+|+++.+
T Consensus 121 Lvlank~dl~~~l~~~~i~~~~-----~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 121 LVLANKQDLPGALSLEEISKAL-----DLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEEEecCcCccccCHHHHHHhh-----CHHHhccccCceEEEEeccccccHHH
Confidence 99999999973 33443322 23444455566668899999998764
No 250
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.09 E-value=1.4e-10 Score=111.28 Aligned_cols=123 Identities=21% Similarity=0.323 Sum_probs=74.0
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCC--CCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIG--PEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~--~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
.|+++|.+|+||||++|.|+|... ..++ ..+.|........ .+.+
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~--f~~~~~~~~~t~~~~~~~~------------------~~~g------------- 48 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEV--FKSGSSAKSVTQECQKYSG------------------EVDG------------- 48 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS---SS--TTTSS--SS-EEEEE------------------EETT-------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccc--eeeccccCCcccccceeee------------------eecc-------------
Confidence 589999999999999999999997 3333 3333333222100 0111
Q ss_pred hhcccccccccceEEcCCCCCChhh--hhhhcccChHHHHHHH---hhcCCeEEEEecCCCCCCCHHHHHHHHHHhCC--
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEK--QRTQRTYDFTGVISWF---AAKCDLILLLFDPHKLDISDEFKRVIASLRGN-- 351 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~--~~~~~~~~~~~~~~~~---~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~-- 351 (547)
..+++|||||+.+... +.+. ..+.+++ ...++++|+|+... .++.++...++.+...
T Consensus 49 ---------~~v~VIDTPGl~d~~~~~~~~~-----~~i~~~l~~~~~g~ha~llVi~~~--r~t~~~~~~l~~l~~~FG 112 (212)
T PF04548_consen 49 ---------RQVTVIDTPGLFDSDGSDEEII-----REIKRCLSLCSPGPHAFLLVIPLG--RFTEEDREVLELLQEIFG 112 (212)
T ss_dssp ---------EEEEEEE--SSEETTEEHHHHH-----HHHHHHHHHTTT-ESEEEEEEETT--B-SHHHHHHHHHHHHHHC
T ss_pred ---------eEEEEEeCCCCCCCcccHHHHH-----HHHHHHHHhccCCCeEEEEEEecC--cchHHHHHHHHHHHHHcc
Confidence 3799999999987521 1111 1233322 45689999999887 4677777777666531
Q ss_pred ---CCeEEEEeccCCCcChHHHHH
Q 008954 352 ---DDKIRVVLNKADQVDTQQLMR 372 (547)
Q Consensus 352 ---~~~iivVlNK~D~~~~~~l~~ 372 (547)
-..++||++.+|......+..
T Consensus 113 ~~~~k~~ivvfT~~d~~~~~~~~~ 136 (212)
T PF04548_consen 113 EEIWKHTIVVFTHADELEDDSLED 136 (212)
T ss_dssp GGGGGGEEEEEEEGGGGTTTTHHH
T ss_pred HHHHhHhhHHhhhccccccccHHH
Confidence 345889999999886654443
No 251
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.09 E-value=1.2e-10 Score=119.35 Aligned_cols=158 Identities=22% Similarity=0.250 Sum_probs=104.7
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---------ccCCceeee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---------TIPGNTIAV 257 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---------~~~g~~~~~ 257 (547)
.++.+.+|. .|..++|+|++|+|||||++.|.|.. .|+++.+.+ ++.+.. ......+++
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~--------~p~~G~I~i--~G~~i~~~~~~~l~~~r~~Ig~v~ 88 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE--------RPTSGSVIV--DGQDLTTLSNSELTKARRQIGMIF 88 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCceEEEE--CCEECCcCCHHHHHHHhcCEEEEE
Confidence 467777665 89999999999999999999999988 345555443 222111 123456677
Q ss_pred cCCCCCCCccccccchhhh-------hhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAFLSK-------FECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
+....+...+..+|..... .+......++++.+.+-| .|+-+|+ ++|++. ++++++.++++
T Consensus 89 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~-------IARAL~~~P~i 161 (343)
T TIGR02314 89 QHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVA-------IARALASNPKV 161 (343)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHHHHhCCCE
Confidence 7766666666666653211 111122234455555433 4566665 666655 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
+|++ +.+.++..+.+..++++.+.+. +.+++++.+.++
T Consensus 162 LLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 162 LLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999 6666666667777888887654 778888776544
No 252
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.09 E-value=7.3e-10 Score=104.20 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=81.2
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+|+|++|+|||||+|.+++..+ . ....+++..... .. ..+.+.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~--~-~~~~~t~~~~~~-~~-----------------~~~~~~------------- 47 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF--P-EEYHPTVFENYV-TD-----------------CRVDGK------------- 47 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--C-cccCCcccceEE-EE-----------------EEECCE-------------
Confidence 3699999999999999999986553 1 112222211111 00 000000
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhC--CCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRG--NDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~--~~~~ii 356 (547)
...+.++||||..... . ........+|++++++|..+...-+... .++..+.. ...|++
T Consensus 48 -------~~~l~i~Dt~g~~~~~--~---------~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~pii 109 (187)
T cd04129 48 -------PVQLALWDTAGQEEYE--R---------LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVI 109 (187)
T ss_pred -------EEEEEEEECCCChhcc--c---------cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 0257899999975321 0 1112357899999998876532222222 23333322 268999
Q ss_pred EEeccCCCcChH-H--------HHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQ-Q--------LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~-~--------l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.... . ........ .+.+..+.. ..+.+||++|.++++
T Consensus 110 lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~e~Sa~~~~~v~~ 163 (187)
T cd04129 110 LVGLKKDLRQDAVAKEEYRTQRFVPIQQGK--RVAKEIGAK--KYMECSALTGEGVDD 163 (187)
T ss_pred EEeeChhhhhCcccccccccCCcCCHHHHH--HHHHHhCCc--EEEEccCCCCCCHHH
Confidence 999999985311 0 00000000 112222222 347899999999875
No 253
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.09 E-value=1.6e-10 Score=99.96 Aligned_cols=112 Identities=22% Similarity=0.345 Sum_probs=64.1
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCC-CCc-ccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIG-PEP-TTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~-~~~-~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
+|+|+|+.|+||||||+.|++... .... +.+ ....... . .....+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~--~~~~~~~~~~~~~~~~-----------------~------~~~~~~~------- 48 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF--PDNSVPEETSEITIGV-----------------D------VIVVDGD------- 48 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----------SSTTSCEEE-----------------E------EEEETTE-------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC--cccccccccCCCcEEE-----------------E------EEEecCC-------
Confidence 589999999999999999999885 2000 000 0111110 0 0000000
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHH---HHHHh--CCCC
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRV---IASLR--GNDD 353 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~l---l~~l~--~~~~ 353 (547)
. ..+.++|++|...... ....++..+|++++++|.++...-....++ +..+. ....
T Consensus 49 -----~---~~~~~~d~~g~~~~~~-----------~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~ 109 (119)
T PF08477_consen 49 -----R---QSLQFWDFGGQEEFYS-----------QHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNI 109 (119)
T ss_dssp -----E---EEEEEEEESSSHCHHC-----------TSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred -----c---eEEEEEecCccceecc-----------cccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCC
Confidence 0 2478999999843211 112237899999999999873322233333 33333 2358
Q ss_pred eEEEEeccCC
Q 008954 354 KIRVVLNKAD 363 (547)
Q Consensus 354 ~iivVlNK~D 363 (547)
|+++|.||.|
T Consensus 110 piilv~nK~D 119 (119)
T PF08477_consen 110 PIILVGNKSD 119 (119)
T ss_dssp EEEEEEE-TC
T ss_pred CEEEEEeccC
Confidence 9999999998
No 254
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.08 E-value=8.6e-10 Score=106.25 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=70.7
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|..|+|||||++.+++..+ +....||....... .+...+.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f---~~~y~pTi~~~~~~-----------------------~~~~~~~-------- 47 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY---PGSYVPTVFENYTA-----------------------SFEIDKR-------- 47 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCccCCccccceEE-----------------------EEEECCE--------
Confidence 3699999999999999999998774 22233333211110 0000000
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHH-HHHh--CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVI-ASLR--GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll-~~l~--~~~~~ii 356 (547)
.-.+.|+||+|... |..+...+...+|++|+++|.++...-+.....+ ..+. ..+.|++
T Consensus 48 -------~v~L~iwDt~G~e~-----------~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~pii 109 (222)
T cd04173 48 -------RIELNMWDTSGSSY-----------YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVV 109 (222)
T ss_pred -------EEEEEEEeCCCcHH-----------HHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE
Confidence 02688999999742 1123334568999999999998743222222222 2222 2368999
Q ss_pred EEeccCCCcC
Q 008954 357 VVLNKADQVD 366 (547)
Q Consensus 357 vVlNK~D~~~ 366 (547)
+|.||+|+..
T Consensus 110 LVgnK~DL~~ 119 (222)
T cd04173 110 LVGCKLDMRT 119 (222)
T ss_pred EEEECccccc
Confidence 9999999864
No 255
>PRK13351 elongation factor G; Reviewed
Probab=99.06 E-value=5.6e-10 Score=125.57 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=54.9
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
..+.|+||||+.+ |...+...+..+|++++|+|+.+ +...+...++..+...+.|+++|+||+|+...
T Consensus 73 ~~i~liDtPG~~d-----------f~~~~~~~l~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 73 HRINLIDTPGHID-----------FTGEVERSLRVLDGAVVVFDAVT-GVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred EEEEEEECCCcHH-----------HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 3799999999863 22345666799999999999987 56666677888888788999999999998753
No 256
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.05 E-value=6.5e-10 Score=102.64 Aligned_cols=158 Identities=18% Similarity=0.261 Sum_probs=103.6
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc--------cCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT--------IPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~--------~~g~~~~~~~ 259 (547)
++.+.+++ .+.+.|++||+|+|||||+++|-... -.+.....++.+.. +|.+... .....+++|.
T Consensus 22 aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn---dl~~~~r~~G~v~~--~g~ni~~~~~d~~~lRr~vGMVFQk 96 (253)
T COG1117 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN---DLIPGARVEGEVLL--DGKNIYDPKVDVVELRRRVGMVFQK 96 (253)
T ss_pred hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc---ccCcCceEEEEEEE--CCeeccCCCCCHHHHHHHheeeccC
Confidence 66776655 78899999999999999999998665 33333333343332 3332111 2346678999
Q ss_pred CCCCCCccccccchh-hhhhh------hcccccccccceEEc--------CCCCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 260 DLPFSGLTTFGGAFL-SKFEC------SQMSHPLLDQVTFVD--------TPGVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~-~~~~~------~~~~~~ll~~l~lvD--------TPG~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
..||+ .+.++|.-. .+... .......|+...++| .+--+|| ++||+. +||+++-++
T Consensus 97 PnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLc-------IARalAv~P 168 (253)
T COG1117 97 PNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLC-------IARALAVKP 168 (253)
T ss_pred CCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHH-------HHHHHhcCC
Confidence 99998 777777632 22222 122333444555665 3433444 566655 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+++|++ ..+.++-.+....+++..|++ .-.+++|-+-
T Consensus 169 eVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHn 207 (253)
T COG1117 169 EVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHN 207 (253)
T ss_pred cEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCC
Confidence 999999 566665566778889999984 4677777554
No 257
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.7e-09 Score=114.64 Aligned_cols=157 Identities=20% Similarity=0.313 Sum_probs=101.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---ccCCceeee---cCCCCCCCccc---cc
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---TIPGNTIAV---HADLPFSGLTT---FG 270 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---~~~g~~~~~---~~~~~~~~l~~---~~ 270 (547)
-+|+|.|.+|+||||++|+++..++ .|.+..|+|.+|.-+...+... ..+|..-.. .-..+..++.. .+
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~kl--LP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKL--LPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhh--CcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 5699999999999999999999999 9999999999998875433211 122210000 00000011111 11
Q ss_pred c-----chhhhhhhhccccccc-ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHH
Q 008954 271 G-----AFLSKFECSQMSHPLL-DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRV 344 (547)
Q Consensus 271 ~-----~~~~~~~~~~~~~~ll-~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~l 344 (547)
. .|+..- ...+| ..+.++|.||+..+.. ....+-.+..++|+++||+.+.. ..+....++
T Consensus 188 ~~sLlrV~~p~~-----~csLLrnDivliDsPGld~~se--------~tswid~~cldaDVfVlV~NaEn-tlt~sek~F 253 (749)
T KOG0448|consen 188 AGSLLRVFWPDD-----KCSLLRNDIVLIDSPGLDVDSE--------LTSWIDSFCLDADVFVLVVNAEN-TLTLSEKQF 253 (749)
T ss_pred cceEEEEEecCc-----cchhhhccceeccCCCCCCchh--------hhHHHHHHhhcCCeEEEEecCcc-HhHHHHHHH
Confidence 1 112222 22344 3699999999986531 12345566899999999999977 566777888
Q ss_pred HHHHhCCCCeEEEEeccCCCcCh-HHHHH
Q 008954 345 IASLRGNDDKIRVVLNKADQVDT-QQLMR 372 (547)
Q Consensus 345 l~~l~~~~~~iivVlNK~D~~~~-~~l~~ 372 (547)
+.........++|+.||+|.... ++..+
T Consensus 254 f~~vs~~KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 254 FHKVSEEKPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred HHHhhccCCcEEEEechhhhhcccHHHHH
Confidence 88777665568888899999754 34443
No 258
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.04 E-value=5.9e-10 Score=104.88 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=111.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-------cccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-------RTIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-------~~~~g~~~~~~~~ 260 (547)
.+++.+++ .|..++|+|++|+|||||++.++|.. .|+.+.+.+...+-.. .-.....+.+|..
T Consensus 23 Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll--------~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g 94 (263)
T COG1127 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL--------RPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG 94 (263)
T ss_pred EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC--------CCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecc
Confidence 56666666 89999999999999999999999999 4666665553222110 1123466789999
Q ss_pred CCCCCccccccchhhhhhhhccccccc-----ccceEEcCCCC-CChhhhhhhccc-ChHHHHHHHhhcCCeEEEE--ec
Q 008954 261 LPFSGLTTFGGAFLSKFECSQMSHPLL-----DQVTFVDTPGV-LSGEKQRTQRTY-DFTGVISWFAAKCDLILLL--FD 331 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~~ll-----~~l~lvDTPG~-~~~~~~~~~~~~-~~~~~~~~~~~~aD~illv--~d 331 (547)
..|..++.++|.-..-.+...+|..+. ..+..|..+|. ..-....++.+| ...++||+++-++++++++ +.
T Consensus 95 ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPts 174 (263)
T COG1127 95 ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTS 174 (263)
T ss_pred ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 999999999997432222233333322 34556665555 221222233333 2356899999999999999 66
Q ss_pred CCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCCC
Q 008954 332 PHKLDISDEFKRVIASLRG-NDDKIRVVLNKADQ 364 (547)
Q Consensus 332 ~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D~ 364 (547)
+.++-....+.+++..++. .+.++++|-+-.|.
T Consensus 175 GLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s 208 (263)
T COG1127 175 GLDPISAGVIDELIRELNDALGLTVIMVTHDLDS 208 (263)
T ss_pred CCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH
Confidence 6675556677788888875 47788888776553
No 259
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3e-10 Score=119.97 Aligned_cols=100 Identities=28% Similarity=0.516 Sum_probs=92.8
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcCC
Q 008954 8 ITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAGR 87 (547)
Q Consensus 8 ~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g~ 87 (547)
-|.+....+-+|+.+|+.+|+...|++|+...+.+|..++||+.+|.+||.+.|.|+||+|+.+||..+|+|+..+..|.
T Consensus 186 eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~sGq 265 (1118)
T KOG1029|consen 186 EWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKSGQ 265 (1118)
T ss_pred hccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhcCC
Confidence 46666777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhccCCCCCCCCCCCCCCccc
Q 008954 88 EITSDILKSGGLMENTEPPSMEGLET 113 (547)
Q Consensus 88 ~~~~~~~~~~~~~~~~~lp~~~~~~~ 113 (547)
++|.-++. .+.+|++.++..
T Consensus 266 ~lP~tlP~------E~Vpp~~r~~rs 285 (1118)
T KOG1029|consen 266 PLPKTLPP------ELVPPSFRSSRS 285 (1118)
T ss_pred CCCCCCCh------hhcCcccccccC
Confidence 99998887 788888877664
No 260
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.04 E-value=3.8e-10 Score=116.16 Aligned_cols=170 Identities=19% Similarity=0.209 Sum_probs=109.8
Q ss_pred cCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCC
Q 008954 183 FNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHAD 260 (547)
Q Consensus 183 ~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~ 260 (547)
|..+. +.++.+++ .|.+-+++|.||||||||+|.|.|.. .|.+.+.--+.-.+-..++.+....|+.++.|..
T Consensus 14 f~~~~--And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~---~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF 88 (501)
T COG3845 14 FPGVV--ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY---QPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHF 88 (501)
T ss_pred cCCEE--ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc---cCCcceEEECCEEeccCCHHHHHHcCCcEEeecc
Confidence 55554 55666655 99999999999999999999999998 3333332222222233445555677999999999
Q ss_pred CCCCCccccccchhhhhh----------hhcccccccccceE-Ec----CCCCCChhhhhhhcccChHHHHHHHhhcCCe
Q 008954 261 LPFSGLTTFGGAFLSKFE----------CSQMSHPLLDQVTF-VD----TPGVLSGEKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~----------~~~~~~~ll~~l~l-vD----TPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
..+..++..+|..+.... .......+-+.+.| +| ...+.-+++|+++ +.+++..++++
T Consensus 89 ~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVE-------IlKaLyr~a~i 161 (501)
T COG3845 89 MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVE-------ILKALYRGARL 161 (501)
T ss_pred ccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHH-------HHHHHhcCCCE
Confidence 999999999887543211 11111111111111 11 0111123567665 89999999999
Q ss_pred EEEEecCC--CCCCCHHHHHHHHHHhCCCCeEEEEeccCCC
Q 008954 326 ILLLFDPH--KLDISDEFKRVIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 326 illv~d~~--~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~ 364 (547)
+||+-... .+.-.+++.++++.+++.|+.++++-+|.+.
T Consensus 162 LILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E 202 (501)
T COG3845 162 LILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE 202 (501)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 99994433 2223345667778888899999999999663
No 261
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.03 E-value=1.1e-09 Score=125.18 Aligned_cols=143 Identities=16% Similarity=0.181 Sum_probs=87.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+|+|+.++|||||+++|+...- .+......+++ +++........|+++.. .....|..... .+....
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g--~i~~~~~g~~~---~~D~~~~E~~rgiti~~~~~~~~~~~~~~----~~~~~~ 90 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAG--IIAQEVAGDVR---MTDTRADEAERGITIKSTGISLYYEMTDE----SLKDFK 90 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcC--CcccccCCcee---eccCcHHHHHhCCceecceeEEEeecccc----cccccc
Confidence 4699999999999999999997663 22222222222 22222223334444411 01111110000 000000
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
.. ...--..++|+||||+.+ |...+...+..+|.+|+|+|+.. ++......+++.+...+.|++++
T Consensus 91 ~~--~~~~~~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~~~p~i~~ 156 (843)
T PLN00116 91 GE--RDGNEYLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLT 156 (843)
T ss_pred cc--cCCCceEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCC-CCcccHHHHHHHHHHCCCCEEEE
Confidence 00 000013689999999964 33445566799999999999987 77777788999888889999999
Q ss_pred eccCCCc
Q 008954 359 LNKADQV 365 (547)
Q Consensus 359 lNK~D~~ 365 (547)
+||+|..
T Consensus 157 iNK~D~~ 163 (843)
T PLN00116 157 VNKMDRC 163 (843)
T ss_pred EECCccc
Confidence 9999998
No 262
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=8.4e-10 Score=116.66 Aligned_cols=91 Identities=32% Similarity=0.444 Sum_probs=86.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHh
Q 008954 5 PSPITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQ 84 (547)
Q Consensus 5 ~~~~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q 84 (547)
...+|.+|++|.+++.+-|..+.+ +.|+|++..++.+|.+++||...|.+||.+.|.|+||++|..||.++|+|+.+..
T Consensus 4 ~~n~WavT~~Er~K~~~qF~~Lkp-~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkL 82 (1118)
T KOG1029|consen 4 MTNPWAVTDEERQKHDAQFGQLKP-GQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKL 82 (1118)
T ss_pred CCCccccchHHHHHHHHHHhccCC-CCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHh
Confidence 345799999999999999998887 7899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhcc
Q 008954 85 AGREITSDILKS 96 (547)
Q Consensus 85 ~g~~~~~~~~~~ 96 (547)
.|.++|+.++++
T Consensus 83 qG~~lP~~LPPs 94 (1118)
T KOG1029|consen 83 QGIQLPPVLPPS 94 (1118)
T ss_pred cCCcCCCCCChH
Confidence 999999988875
No 263
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.03 E-value=5.7e-10 Score=108.50 Aligned_cols=147 Identities=20% Similarity=0.272 Sum_probs=91.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
+-|+|+++|.+|+|||||||+|.+..+ . |..--|..+ ++...
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal--~-----p~drLFATL----------------DpT~h--------------- 218 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAAL--Y-----PNDRLFATL----------------DPTLH--------------- 218 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhc--C-----ccchhheec----------------cchhh---------------
Confidence 448999999999999999999997664 1 111000000 00000
Q ss_pred hhhcccccccccceEEcCCCCCChhh-hhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe--
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEK-QRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-- 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~-~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-- 354 (547)
...+|+- ..+.+.||-|+.+.-. +.+. . .+.+..-+..+|++|.|.|.+.|....+...++.-+++.+.|
T Consensus 219 -~a~Lpsg--~~vlltDTvGFisdLP~~Lva-A---F~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~ 291 (410)
T KOG0410|consen 219 -SAHLPSG--NFVLLTDTVGFISDLPIQLVA-A---FQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSE 291 (410)
T ss_pred -hccCCCC--cEEEEeechhhhhhCcHHHHH-H---HHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcH
Confidence 0000000 3688999999998521 2222 1 234455578999999999999877766666777777766554
Q ss_pred -----EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 -----IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 -----iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++=|-||+|..+.. .....--.+.+|+++|.|+++
T Consensus 292 pkl~~mieVdnkiD~e~~~----------------~e~E~n~~v~isaltgdgl~e 331 (410)
T KOG0410|consen 292 PKLQNMIEVDNKIDYEEDE----------------VEEEKNLDVGISALTGDGLEE 331 (410)
T ss_pred HHHhHHHhhcccccccccc----------------CccccCCccccccccCccHHH
Confidence 56678888875421 000111136899999999875
No 264
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=6.5e-10 Score=114.93 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=103.9
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
.++||.+--.|||||...|+...- .+.+ .....-+++.-+..+..|+|+..+...-|... |..
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg---~i~~---~~~q~q~LDkl~vERERGITIkaQtasify~~---~~~-------- 124 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTG---TIDN---NIGQEQVLDKLQVERERGITIKAQTASIFYKD---GQS-------- 124 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhC---CCCC---CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc---CCc--------
Confidence 489999999999999999997651 1111 11111122333334567887755543222111 211
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEec
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLN 360 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlN 360 (547)
..+++|||||+.+-. . .+...+.-||.+|+|+||.. ++..+....+...-+.+..+|.|+|
T Consensus 125 -------ylLNLIDTPGHvDFs-~----------EVsRslaac~G~lLvVDA~q-GvqAQT~anf~lAfe~~L~iIpVlN 185 (650)
T KOG0462|consen 125 -------YLLNLIDTPGHVDFS-G----------EVSRSLAACDGALLVVDASQ-GVQAQTVANFYLAFEAGLAIIPVLN 185 (650)
T ss_pred -------eEEEeecCCCccccc-c----------eehehhhhcCceEEEEEcCc-CchHHHHHHHHHHHHcCCeEEEeee
Confidence 368999999998631 1 22223578999999999998 6776666555444456899999999
Q ss_pred cCCCcC--hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 361 KADQVD--TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 361 K~D~~~--~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+|+.. ++++..... .++..+.-.++++||+.|.++.+
T Consensus 186 KIDlp~adpe~V~~q~~-------~lF~~~~~~~i~vSAK~G~~v~~ 225 (650)
T KOG0462|consen 186 KIDLPSADPERVENQLF-------ELFDIPPAEVIYVSAKTGLNVEE 225 (650)
T ss_pred ccCCCCCCHHHHHHHHH-------HHhcCCccceEEEEeccCccHHH
Confidence 999974 344443333 33444444558999999998765
No 265
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.02 E-value=1.2e-09 Score=100.60 Aligned_cols=114 Identities=18% Similarity=0.304 Sum_probs=63.1
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
++.|+|+|++|+|||+|+..|.....+...+|-+|..+. .+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~------------------------~~--------------- 43 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAY------------------------NV--------------- 43 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEEC------------------------CG---------------
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceE------------------------Ee---------------
Confidence 578999999999999999999987641111111111100 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHH--HhhcCCeEEEEecCCCCCCCHHHH-------HHHHHHh
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISW--FAAKCDLILLLFDPHKLDISDEFK-------RVIASLR 349 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~--~~~~aD~illv~d~~~~~~~~~~~-------~ll~~l~ 349 (547)
...--..+.+||+||+..-..+ .... ....+..||||+|+.. ...+.. +++....
T Consensus 44 ----~~~~~~~~~lvD~PGH~rlr~~----------~~~~~~~~~~~k~IIfvvDSs~--~~~~~~~~Ae~Ly~iL~~~~ 107 (181)
T PF09439_consen 44 ----NNSKGKKLRLVDIPGHPRLRSK----------LLDELKYLSNAKGIIFVVDSST--DQKELRDVAEYLYDILSDTE 107 (181)
T ss_dssp ----SSTCGTCECEEEETT-HCCCHH----------HHHHHHHHGGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred ----ecCCCCEEEEEECCCcHHHHHH----------HHHhhhchhhCCEEEEEEeCcc--chhhHHHHHHHHHHHHHhhh
Confidence 0000147899999999642211 1222 4688999999999974 222222 2332222
Q ss_pred --CCCCeEEEEeccCCCcCh
Q 008954 350 --GNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 350 --~~~~~iivVlNK~D~~~~ 367 (547)
..+.|++|++||.|+...
T Consensus 108 ~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 108 VQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp CCTT--EEEEEEE-TTSTT-
T ss_pred hccCCCCEEEEEeCcccccc
Confidence 457899999999999753
No 266
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.01 E-value=3.1e-10 Score=114.79 Aligned_cols=165 Identities=20% Similarity=0.308 Sum_probs=106.7
Q ss_pred hhhhhhhccCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc---
Q 008954 175 KPLEATYRFNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT--- 249 (547)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~--- 249 (547)
+.+.+. |+.+ .++++.+++ +|.+++++||+||||||++++|.|.+ .|+.+++.+ .|.+...
T Consensus 9 ~~v~k~--yg~~--~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe--------~p~~G~I~l--~G~~i~~lpp 74 (352)
T COG3842 9 RNVSKS--FGDF--TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE--------QPSSGEILL--DGEDITDVPP 74 (352)
T ss_pred Eeeeee--cCCe--eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCEECCCCCh
Confidence 344455 5543 366766665 89999999999999999999999999 344444433 3333222
Q ss_pred -cCCceeeecCCCCCCCccccccc-hhhh-------hhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHH
Q 008954 250 -IPGNTIAVHADLPFSGLTTFGGA-FLSK-------FECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGV 315 (547)
Q Consensus 250 -~~g~~~~~~~~~~~~~l~~~~~~-~~~~-------~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~ 315 (547)
..++.+++|.-..|+.++.++|. |--+ .+......+.++.+.+-+ -|.-+|+ ++||+ ++
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRV-------AL 147 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRV-------AL 147 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHH-------HH
Confidence 34667789999999999999885 3111 112233344444444433 3333444 45554 48
Q ss_pred HHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHH-hCCCCeEEEEec
Q 008954 316 ISWFAAKCDLILLL--FDPHKLDISDEFKRVIASL-RGNDDKIRVVLN 360 (547)
Q Consensus 316 ~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l-~~~~~~iivVlN 360 (547)
+|+++.+++++|++ +.+.+.....+...-++.+ ++.+.++++|-+
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTH 195 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTH 195 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 99999999999999 6666544455554444444 455888888755
No 267
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.01 E-value=1.1e-08 Score=103.82 Aligned_cols=99 Identities=22% Similarity=0.197 Sum_probs=57.3
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
..+.|+||+|+...+.. .+..||++++++++.. .++...+.....+ ..-++|+||+|+...
T Consensus 149 ~d~viieT~Gv~qs~~~--------------i~~~aD~vlvv~~p~~---gd~iq~~k~gi~E--~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 149 YDVILVETVGVGQSETA--------------VAGMVDFFLLLQLPGA---GDELQGIKKGIME--LADLIVINKADGDNK 209 (332)
T ss_pred CCEEEEECCCCccchhH--------------HHHhCCEEEEEecCCc---hHHHHHHHhhhhh--hhheEEeehhcccch
Confidence 36899999999853211 2567999999976322 2232222211111 123899999999875
Q ss_pred HHHHHHHHHHHHhhhhcc---CCCCcEEEEecccCCCCCCC
Q 008954 368 QQLMRVYGALMWSLGKVL---NTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 368 ~~l~~~~~~l~~~l~~~~---~~~~v~~v~isa~~~~~l~~ 405 (547)
....+....+...+.-.. .....+++++||.++.|+++
T Consensus 210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIde 250 (332)
T PRK09435 210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDE 250 (332)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHH
Confidence 443333333322222111 01124558999999999886
No 268
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=3.1e-09 Score=111.10 Aligned_cols=185 Identities=19% Similarity=0.216 Sum_probs=114.8
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCC-------------CCcccceeEEEEeCCCccccCCceeeecCCCCCC
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIG-------------PEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFS 264 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~-------------~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~ 264 (547)
.-...+++|...+|||||+-.|+-.. -+++ ..+....+.++.+...+.+..|.++.+-.
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydL---g~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~----- 247 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDL---GEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKT----- 247 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHh---cCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeee-----
Confidence 34568899999999999999998443 1111 11223555667777777778888884321
Q ss_pred CccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCC------CCCC
Q 008954 265 GLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHK------LDIS 338 (547)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~------~~~~ 338 (547)
+.|+.. -..++|+|+||+.+--.. +-.-+..||+.++|+|++. ++..
T Consensus 248 --~~fes~--------------~~~~tliDaPGhkdFi~n-----------mi~g~sqaD~avLvvd~s~~~FE~gfd~~ 300 (603)
T KOG0458|consen 248 --TWFESK--------------SKIVTLIDAPGHKDFIPN-----------MISGASQADVAVLVVDASTGEFESGFDPG 300 (603)
T ss_pred --EEEecC--------------ceeEEEecCCCccccchh-----------hhccccccceEEEEEECCcchhhhccCCC
Confidence 111110 047999999997542222 2223578999999999865 1222
Q ss_pred HHHHHHHHHHhCCCC-eEEEEeccCCCcC--hHHHHHHHHHHHHhhhhccCC--CCcEEEEecccCCCCCCCCCCCCcch
Q 008954 339 DEFKRVIASLRGNDD-KIRVVLNKADQVD--TQQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPINGEVVGPIGQ 413 (547)
Q Consensus 339 ~~~~~ll~~l~~~~~-~iivVlNK~D~~~--~~~l~~~~~~l~~~l~~~~~~--~~v~~v~isa~~~~~l~~~~~~~~~~ 413 (547)
.+.++....++..|. .++|++||+|.++ .+.+.+....+..-|.+..++ +++-.+|+|++.|+++......+...
T Consensus 301 gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~ 380 (603)
T KOG0458|consen 301 GQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELS 380 (603)
T ss_pred CchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhh
Confidence 233444444444443 5899999999996 344555555554445444444 45567999999999998753333333
Q ss_pred HhhH
Q 008954 414 ELFE 417 (547)
Q Consensus 414 ~~~~ 417 (547)
.+|.
T Consensus 381 ~WY~ 384 (603)
T KOG0458|consen 381 QWYK 384 (603)
T ss_pred hhhc
Confidence 3343
No 269
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.01 E-value=5.7e-10 Score=104.90 Aligned_cols=171 Identities=19% Similarity=0.205 Sum_probs=114.7
Q ss_pred chhhhhhhccCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccC
Q 008954 174 LKPLEATYRFNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIP 251 (547)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~ 251 (547)
++.+.++ |+++. ++++.+|. +|.+.+++|+|||||||+++.|+|.. +|+++.+++...........
T Consensus 5 ie~vtK~--Fg~k~--av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll--------e~~~G~I~~~g~~~~~~~~~ 72 (300)
T COG4152 5 IEGVTKS--FGDKK--AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL--------EPTEGEITWNGGPLSQEIKN 72 (300)
T ss_pred Eecchhc--cCcee--eecceeeeecCCeEEEeecCCCCCccchHHHHhccC--------CccCceEEEcCcchhhhhhh
Confidence 3445555 77765 77788777 89999999999999999999999988 66777766632222222233
Q ss_pred CceeeecCCCCCCCccccccc-hhhh------hhhhcccccccccceEEcCCCC-----CChhhhhhhcccChHHHHHHH
Q 008954 252 GNTIAVHADLPFSGLTTFGGA-FLSK------FECSQMSHPLLDQVTFVDTPGV-----LSGEKQRTQRTYDFTGVISWF 319 (547)
Q Consensus 252 g~~~~~~~~~~~~~l~~~~~~-~~~~------~~~~~~~~~ll~~l~lvDTPG~-----~~~~~~~~~~~~~~~~~~~~~ 319 (547)
.+...++++-.|+.++..+.. |+.+ .+.......+|+.+.+.+-+.- ..|++|++. ...+.
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQ-------fisav 145 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQ-------FISAV 145 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHH-------HHHHH
Confidence 444456666666666665543 3222 2223334455666666654322 123344433 56777
Q ss_pred hhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 320 AAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 320 ~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+++|+++|++ |++.++-..+-.++.+..+++.|..+++.-+.+.
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me 191 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME 191 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH
Confidence 9999999999 8888866667778888899999999988765543
No 270
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.01 E-value=2.3e-09 Score=101.81 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=61.4
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC--CCCeEEEEeccCCCcC
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG--NDDKIRVVLNKADQVD 366 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~--~~~~iivVlNK~D~~~ 366 (547)
.+.|+||||... |..+...+...+|++|+|+|.++...-+....++..+.. .+.|+++|.||+|+..
T Consensus 45 ~l~iwDt~G~e~-----------~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 45 RFNVWDTAGQEK-----------FGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD 113 (200)
T ss_pred EEEEEECCCchh-----------hhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 689999999853 122444567899999999999873222223333443433 4689999999999853
Q ss_pred hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 367 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 367 ~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.....+.. .+ .+.. .+..+.+||++|.++.+
T Consensus 114 ~~v~~~~~-~~----~~~~---~~~~~e~SAk~~~~v~~ 144 (200)
T smart00176 114 RKVKAKSI-TF----HRKK---NLQYYDISAKSNYNFEK 144 (200)
T ss_pred ccCCHHHH-HH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 21101111 11 1111 23457899999999875
No 271
>PTZ00258 GTP-binding protein; Provisional
Probab=99.00 E-value=2e-09 Score=111.04 Aligned_cols=107 Identities=13% Similarity=0.060 Sum_probs=65.2
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
..+..|+|+|.||+|||||+|+|.+.. ..+++.|.||......- ....+. .+..+
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~---~~v~n~pftTi~p~~g~----------v~~~d~--r~~~l---------- 73 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ---VPAENFPFCTIDPNTAR----------VNVPDE--RFDWL---------- 73 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc---ccccCCCCCcccceEEE----------Eecccc--hhhHH----------
Confidence 356789999999999999999999988 78888898885433110 000000 00000
Q ss_pred hhhhcccc-cccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCC
Q 008954 277 FECSQMSH-PLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPH 333 (547)
Q Consensus 277 ~~~~~~~~-~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~ 333 (547)
.....|. ..-.++.|+||||+..+.... +++ .......+.++|++++|+|+.
T Consensus 74 -~~~~~~~~~~~aqi~lvDtpGLv~ga~~g--~gL--g~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 74 -CKHFKPKSIVPAQLDITDIAGLVKGASEG--EGL--GNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred -HHHcCCcccCCCCeEEEECCCcCcCCcch--hHH--HHHHHHHHHHCCEEEEEEeCC
Confidence 0000000 011378999999998653221 111 112334478999999999984
No 272
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=3e-09 Score=96.39 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=98.1
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
+.+|+++|..|+||||||+..+-..+ ...-++|-+-..+. ..+.+.+.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~f---d~~YqATIGiDFls-----------------kt~~l~d~------------ 69 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKF---DNTYQATIGIDFLS-----------------KTMYLEDR------------ 69 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhh---cccccceeeeEEEE-----------------EEEEEcCc------------
Confidence 47899999999999999999997764 22223333322211 00001111
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC-C---CCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG-N---DDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~-~---~~~ 354 (547)
.-.+.++||+|... |..++-.++.++.++|.|+|-.+...-+.....|+.+.. + +.-
T Consensus 70 --------~vrLQlWDTAGQER-----------FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~vi 130 (221)
T KOG0094|consen 70 --------TVRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVI 130 (221)
T ss_pred --------EEEEEEEecccHHH-----------HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceE
Confidence 02789999999742 456788889999999999998874444555566665543 2 244
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|-||.|+++..++....+.. .++.++ +..+.+||+.|.++..
T Consensus 131 I~LVGnKtDL~dkrqvs~eEg~~---kAkel~---a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 131 IFLVGNKTDLSDKRQVSIEEGER---KAKELN---AEFIETSAKAGENVKQ 175 (221)
T ss_pred EEEEcccccccchhhhhHHHHHH---HHHHhC---cEEEEecccCCCCHHH
Confidence 77889999999887665544432 122232 2346889999998864
No 273
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.99 E-value=2e-09 Score=115.19 Aligned_cols=126 Identities=15% Similarity=0.160 Sum_probs=76.1
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCC-CcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGP-EPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~-~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
....|+|+|++|+||||++|.|+|... ..++. .+.|++...+.. ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekv--f~vss~~~~TTr~~ei~~------------------~idG----------- 165 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVK--FSTDAFGMGTTSVQEIEG------------------LVQG----------- 165 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcccc--ccccCCCCCceEEEEEEE------------------EECC-----------
Confidence 346799999999999999999999986 55554 355555432100 0011
Q ss_pred hhhhcccccccccceEEcCCCCCChhh-hhhhcccChHHHHHHHh-hcCCeEEEEecCCCCCCCHHHHHHHHHHhC----
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEK-QRTQRTYDFTGVISWFA-AKCDLILLLFDPHKLDISDEFKRVIASLRG---- 350 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~-~~~~~~~~~~~~~~~~~-~~aD~illv~d~~~~~~~~~~~~ll~~l~~---- 350 (547)
..+.+|||||+.+... +.....+ ...+.+++. ..+|+||+|+.........++..+++.+..
T Consensus 166 -----------~~L~VIDTPGL~dt~~dq~~neeI-Lk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~ 233 (763)
T TIGR00993 166 -----------VKIRVIDTPGLKSSASDQSKNEKI-LSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP 233 (763)
T ss_pred -----------ceEEEEECCCCCccccchHHHHHH-HHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH
Confidence 3789999999997521 1111110 111222322 358999998654322222244456655542
Q ss_pred -CCCeEEEEeccCCCcC
Q 008954 351 -NDDKIRVVLNKADQVD 366 (547)
Q Consensus 351 -~~~~iivVlNK~D~~~ 366 (547)
.-..+|||++..|.+.
T Consensus 234 ~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 234 SIWFNAIVTLTHAASAP 250 (763)
T ss_pred HhHcCEEEEEeCCccCC
Confidence 1346899999999985
No 274
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.99 E-value=5.8e-09 Score=95.24 Aligned_cols=147 Identities=20% Similarity=0.261 Sum_probs=86.8
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|..|+|||||++.+.+... .....|+.+....... + .+.+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~---~~~~~~t~~~~~~~~~-----------~------~~~~--------------- 45 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF---PENYIPTIGIDSYSKE-----------V------SIDG--------------- 45 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST---TSSSETTSSEEEEEEE-----------E------EETT---------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc---cccccccccccccccc-----------c------cccc---------------
Confidence 589999999999999999998874 2223333322211000 0 0000
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH---hCCCCeEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL---RGNDDKIRV 357 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l---~~~~~~iiv 357 (547)
..-.+.++||+|...- ......+...+|++|+++|..+...-+....++..+ ...+.|+++
T Consensus 46 -----~~~~l~i~D~~g~~~~-----------~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iiv 109 (162)
T PF00071_consen 46 -----KPVNLEIWDTSGQERF-----------DSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIV 109 (162)
T ss_dssp -----EEEEEEEEEETTSGGG-----------HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEE
T ss_pred -----cccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 0026899999996421 123455689999999999987632222222333333 333589999
Q ss_pred EeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+....++.. ....+ .+..+ ...+.+||+++.++.+
T Consensus 110 vg~K~D~~~~~~v~~~~~~~~----~~~~~---~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 110 VGNKSDLSDEREVSVEEAQEF----AKELG---VPYFEVSAKNGENVKE 151 (162)
T ss_dssp EEETTTGGGGSSSCHHHHHHH----HHHTT---SEEEEEBTTTTTTHHH
T ss_pred eeccccccccccchhhHHHHH----HHHhC---CEEEEEECCCCCCHHH
Confidence 999999875322111 11111 12222 4457899999988764
No 275
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.98 E-value=3.3e-09 Score=96.88 Aligned_cols=142 Identities=11% Similarity=0.153 Sum_probs=82.4
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|.+|+|||||++.+++..+ ... .+++...... .+ .+.+ ..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f--~~~--~~~~~~~~~~------------~i------~~~~-----~~-------- 46 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY--VQL--ESPEGGRFKK------------EV------LVDG-----QS-------- 46 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC--CCC--CCCCccceEE------------EE------EECC-----EE--------
Confidence 589999999999999998887664 111 1111111100 00 0001 00
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~ii 356 (547)
..+.++||+|.... .+...+|++++++|.++...-+....++..+.. .+.|++
T Consensus 47 -------~~l~i~D~~g~~~~----------------~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~pii 103 (158)
T cd04103 47 -------HLLLIRDEGGAPDA----------------QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLI 103 (158)
T ss_pred -------EEEEEEECCCCCch----------------hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 25789999998531 123679999999998874333333444444432 357999
Q ss_pred EEeccCCCcC--hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVD--TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~--~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.. ..++....+ ..+.+... ....+.+||+++.++++
T Consensus 104 lvgnK~Dl~~~~~~~v~~~~~---~~~~~~~~--~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 104 LVGTQDAISESNPRVIDDARA---RQLCADMK--RCSYYETCATYGLNVER 149 (158)
T ss_pred EEeeHHHhhhcCCcccCHHHH---HHHHHHhC--CCcEEEEecCCCCCHHH
Confidence 9999999742 222222111 11122111 23347899999999875
No 276
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.5e-09 Score=94.52 Aligned_cols=149 Identities=16% Similarity=0.189 Sum_probs=94.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.++.++|.+|+|||.|+...+...+ .++.. .|- -+.++.....+.+. .
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF--~~~hd--~Ti---Gvefg~r~~~id~k-----------~-------------- 54 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRF--QPVHD--LTI---GVEFGARMVTIDGK-----------Q-------------- 54 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCc--ccccc--cee---eeeeceeEEEEcCc-----------e--------------
Confidence 5799999999999999999999887 33322 111 12122111001000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~~ii 356 (547)
-.+.++||.|..+ |.++++.+...+..+|+|.|-..-+.-......|..++. .+..++
T Consensus 55 --------IKlqiwDtaGqe~-----------frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvIm 115 (216)
T KOG0098|consen 55 --------IKLQIWDTAGQES-----------FRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIM 115 (216)
T ss_pred --------EEEEEEecCCcHH-----------HHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEE
Confidence 1688999999864 456888999999999999887652222233334444433 356788
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++-||+|+....++.+..++.+. +. ...+...+||++++++++
T Consensus 116 LiGNKsDL~~rR~Vs~EEGeaFA---~e---hgLifmETSakt~~~VEE 158 (216)
T KOG0098|consen 116 LIGNKSDLEARREVSKEEGEAFA---RE---HGLIFMETSAKTAENVEE 158 (216)
T ss_pred EEcchhhhhccccccHHHHHHHH---HH---cCceeehhhhhhhhhHHH
Confidence 99999999876555544444322 11 123335789999988765
No 277
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.97 E-value=1.9e-09 Score=121.72 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=82.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+++|+.++|||||+.+|+...- ........+ ..+++........|+++.. ...+.|.. .. .+
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g--~i~~~~~g~---~~~~D~~~~E~~rgiTi~~~~~~~~~~~-~~-~~------- 86 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAG--MISEELAGE---QLALDFDEEEQARGITIKAANVSMVHEY-EG-KE------- 86 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcC--CcchhhcCc---ceecCccHHHHHhhhhhhccceEEEEEe-cC-Cc-------
Confidence 4599999999999999999997552 211111111 1112222222233444311 00111100 00 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
..++|+||||+.+ |...+...+..+|.+|+|+|+.. +...+...+++.....+.|.+++
T Consensus 87 ---------~~i~liDtPG~~d-----------f~~~~~~~l~~~D~avlVvda~~-g~~~~t~~~~~~~~~~~~~~iv~ 145 (731)
T PRK07560 87 ---------YLINLIDTPGHVD-----------FGGDVTRAMRAVDGAIVVVDAVE-GVMPQTETVLRQALRERVKPVLF 145 (731)
T ss_pred ---------EEEEEEcCCCccC-----------hHHHHHHHHHhcCEEEEEEECCC-CCCccHHHHHHHHHHcCCCeEEE
Confidence 3689999999975 22345666789999999999987 66677778888766667889999
Q ss_pred eccCCCc
Q 008954 359 LNKADQV 365 (547)
Q Consensus 359 lNK~D~~ 365 (547)
+||+|..
T Consensus 146 iNK~D~~ 152 (731)
T PRK07560 146 INKVDRL 152 (731)
T ss_pred EECchhh
Confidence 9999986
No 278
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.97 E-value=1.7e-09 Score=104.91 Aligned_cols=159 Identities=21% Similarity=0.299 Sum_probs=89.0
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccC------CceeeecCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIP------GNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~------g~~~~~~~~ 260 (547)
..+++.+|. .|.+++|+||||||||||+++|+|.. .|..+.+.+ +|......+ -.+.+.|..
T Consensus 16 ~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l--------~p~~G~V~l--~g~~i~~~~~kelAk~ia~vpQ~~ 85 (258)
T COG1120 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL--------KPKSGEVLL--DGKDIASLSPKELAKKLAYVPQSP 85 (258)
T ss_pred eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC--------CCCCCEEEE--CCCchhhcCHHHHhhhEEEeccCC
Confidence 356666666 88999999999999999999999987 333343333 222111111 122233332
Q ss_pred CCCCCccccccchhhh-----------hhhhcccccccccceEEc---CC-CCCC-hhhhhhhcccChHHHHHHHhhcCC
Q 008954 261 LPFSGLTTFGGAFLSK-----------FECSQMSHPLLDQVTFVD---TP-GVLS-GEKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~-----------~~~~~~~~~ll~~l~lvD---TP-G~~~-~~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
....+++.++-..+.| .+......+.++.+.+.+ -+ .-+| |++|++- +|++++++++
T Consensus 86 ~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~-------iArALaQ~~~ 158 (258)
T COG1120 86 SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVL-------IARALAQETP 158 (258)
T ss_pred CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHH-------HHHHHhcCCC
Confidence 2222333222211111 111111222222322222 11 1223 4667654 8999999999
Q ss_pred eEEEEec--CCCCCCCHHHHHHHHHHh-CCCCeEEEEeccCCC
Q 008954 325 LILLLFD--PHKLDISDEFKRVIASLR-GNDDKIRVVLNKADQ 364 (547)
Q Consensus 325 ~illv~d--~~~~~~~~~~~~ll~~l~-~~~~~iivVlNK~D~ 364 (547)
+++++-. ..|+...-+..++++.+. +.+..+++|++-.++
T Consensus 159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~ 201 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL 201 (258)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 9999943 444444456677888887 558889999887654
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.97 E-value=3.3e-09 Score=119.48 Aligned_cols=128 Identities=18% Similarity=0.221 Sum_probs=81.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecC-C----CCCCCccccccchh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHA-D----LPFSGLTTFGGAFL 274 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~-~----~~~~~l~~~~~~~~ 274 (547)
..|+++|+.++|||||+++|+...- . ++.. ..+. ...+.........|+++.... . ..+.+
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g--~-i~~~-~~~~-~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~--------- 85 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAG--M-ISEE-LAGQ-QLYLDFDEQEQERGITINAANVSMVHEYEGNE--------- 85 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcC--C-Cchh-cCCc-eeecCCCHHHHhhcchhhcccceeEEeecCCc---------
Confidence 5699999999999999999986431 1 1111 1111 111111111122333331100 0 01111
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK 354 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ 354 (547)
.++.|+||||+.. |...+...+..+|++|+|+|+.. +...+...+++.+...+.|
T Consensus 86 -------------~~i~liDTPG~~~-----------f~~~~~~al~~aD~~llVvda~~-g~~~~t~~~~~~~~~~~~p 140 (720)
T TIGR00490 86 -------------YLINLIDTPGHVD-----------FGGDVTRAMRAVDGAIVVVCAVE-GVMPQTETVLRQALKENVK 140 (720)
T ss_pred -------------eEEEEEeCCCccc-----------cHHHHHHHHHhcCEEEEEEecCC-CCCccHHHHHHHHHHcCCC
Confidence 3789999999974 22245566899999999999976 5666667788777677788
Q ss_pred EEEEeccCCCcC
Q 008954 355 IRVVLNKADQVD 366 (547)
Q Consensus 355 iivVlNK~D~~~ 366 (547)
+++++||+|...
T Consensus 141 ~ivviNKiD~~~ 152 (720)
T TIGR00490 141 PVLFINKVDRLI 152 (720)
T ss_pred EEEEEEChhccc
Confidence 899999999863
No 280
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.97 E-value=6.3e-10 Score=114.21 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=102.1
Q ss_pred chhhhhhhccCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCC---cc
Q 008954 174 LKPLEATYRFNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPD---ER 248 (547)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~---~~ 248 (547)
++.+.+. |+.. .++++.+|+ .|.+++|+|+||+|||||++.|+|.. .|+.+.+.+...... ..
T Consensus 44 i~nl~k~--y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~--------~p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 44 LAGVSKS--YGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT--------SPDAGKITVLGVPVPARARL 111 (340)
T ss_pred EEEEEEE--ECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC--------CCCceEEEECCEECCcchHH
Confidence 4445544 3332 367777655 89999999999999999999999987 344454444211111 01
Q ss_pred ccCCceeeecCCCCCCCccccccch-hhhhh------hhcccccccccceEEc----CCCCCC-hhhhhhhcccChHHHH
Q 008954 249 TIPGNTIAVHADLPFSGLTTFGGAF-LSKFE------CSQMSHPLLDQVTFVD----TPGVLS-GEKQRTQRTYDFTGVI 316 (547)
Q Consensus 249 ~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~~------~~~~~~~ll~~l~lvD----TPG~~~-~~~~~~~~~~~~~~~~ 316 (547)
...+...+++....+..++..++.. ..... .......++..+.+-+ .++-+| |+++++. ++
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~-------lA 184 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLT-------LA 184 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHH-------HH
Confidence 1234455666655555555555542 11110 0111123333333322 223334 3566554 89
Q ss_pred HHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 317 SWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 317 ~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++++.+|+++|++ +.+.++....++.+++..+...+..++++-+..+
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 9999999999999 6666655566778888888766777777766443
No 281
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.96 E-value=8e-10 Score=112.06 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=98.6
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc---cccCCceeeecCCCCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE---RTIPGNTIAVHADLPF 263 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~---~~~~g~~~~~~~~~~~ 263 (547)
.++++.++. .|.+++++|+||||||||++.|+|.. .|+.+.+.+....... ........+++....+
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~--------~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~ 92 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT--------HPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLD 92 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--------CCCceEEEECCEecccchHHHHhcEEEEeccCcCC
Confidence 367777766 89999999999999999999999987 3455554442111110 1123455566666566
Q ss_pred CCccccccch-hhhhh------hhcccccccccceEE---cC-CCCCC-hhhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAF-LSKFE------CSQMSHPLLDQVTFV---DT-PGVLS-GEKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~-~~~~~------~~~~~~~ll~~l~lv---DT-PG~~~-~~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..++.. ..... .......+++.+.+- ++ ++-.| |+++++. ++++++.+++++|++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~aL~~~P~lllLDEP 165 (306)
T PRK13537 93 PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLT-------LARALVNDPDVLVLDEP 165 (306)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHH-------HHHHHhCCCCEEEEeCC
Confidence 6666666642 12111 111122333333332 22 23344 3566554 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 330 FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+.+.++....++.++++.+++.+..++++-+-.+
T Consensus 166 t~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 166 TTGLDPQARHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 5555555556777888888766777777655443
No 282
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.96 E-value=7.7e-09 Score=93.34 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=92.3
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+|+|+.++||||++..+..... ..+....+... ......++... .|..+...+.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~--v~t~~~~~~~s---------~k~kr~tTva~----D~g~~~~~~~------ 67 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPL--VITEADASSVS---------GKGKRPTTVAM----DFGSIELDED------ 67 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhcccc--ceeeccccccc---------cccccceeEee----cccceEEcCc------
Confidence 356899999999999999999997663 11111000000 00000011111 1122222221
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCC-CeEE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGND-DKIR 356 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~-~~ii 356 (547)
..+.|+||||+.. .. | ...-+.+.++.+++++|++++ ......++++.+.... .|++
T Consensus 68 ----------~~v~LfgtPGq~R-----F~----f--m~~~l~~ga~gaivlVDss~~-~~~~a~~ii~f~~~~~~ip~v 125 (187)
T COG2229 68 ----------TGVHLFGTPGQER-----FK----F--MWEILSRGAVGAIVLVDSSRP-ITFHAEEIIDFLTSRNPIPVV 125 (187)
T ss_pred ----------ceEEEecCCCcHH-----HH----H--HHHHHhCCcceEEEEEecCCC-cchHHHHHHHHHhhccCCCEE
Confidence 3789999999963 11 1 334446889999999999883 4445567777776655 8999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~ 404 (547)
+.+||.|+.+....+.+.+.+.. ....++.+.+++..+.+..
T Consensus 126 Va~NK~DL~~a~ppe~i~e~l~~------~~~~~~vi~~~a~e~~~~~ 167 (187)
T COG2229 126 VAINKQDLFDALPPEKIREALKL------ELLSVPVIEIDATEGEGAR 167 (187)
T ss_pred EEeeccccCCCCCHHHHHHHHHh------ccCCCceeeeecccchhHH
Confidence 99999999754222222222211 1124555788887776654
No 283
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.96 E-value=1.2e-09 Score=105.22 Aligned_cols=156 Identities=22% Similarity=0.315 Sum_probs=92.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---------ccCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---------TIPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---------~~~g~~~~~~ 258 (547)
.+.+.++. +|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... .......+++
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~~i~~~~q 87 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE--------KPTRGKIRF--NGQDLTRLRGREIPFLRRHIGMVFQ 87 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEehhhcChhHHHHHHHhceEEec
Confidence 45555544 89999999999999999999999987 234444332 221110 0123444555
Q ss_pred CCCCCCCccccccchhh-h------hhhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 259 ADLPFSGLTTFGGAFLS-K------FECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
....+...+..++.... . ........++++.+.+ .+ .|+-.|+ ++|++. ++++++.+++++
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------laral~~~p~ll 160 (216)
T TIGR00960 88 DHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVA-------IARAIVHKPPLL 160 (216)
T ss_pred CccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHHhcCCCEE
Confidence 54444444554443211 0 0011112233333333 22 3455554 566654 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
|++ +.+.+........+++..+.+.+..++++-+..
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 198 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI 198 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 999 555554445566677777765566777776643
No 284
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.96 E-value=2e-09 Score=109.84 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=62.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+|+|.||+|||||+|+|+|.. +.+++.|.||..... |.....+.... .+. .
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~---~~v~nypftTi~p~~----------G~~~v~d~r~~--~l~-----------~ 56 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG---AEAANYPFCTIEPNV----------GVVPVPDPRLD--KLA-----------E 56 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CeecccccccccceE----------EEEEeccccch--hhH-----------H
Confidence 579999999999999999999998 788888888854321 00000000000 000 0
Q ss_pred hccccccc-ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCC
Q 008954 280 SQMSHPLL-DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPH 333 (547)
Q Consensus 280 ~~~~~~ll-~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~ 333 (547)
..-|.... .++.|+||||+..+.... +++ .......+.++|++++|+|+.
T Consensus 57 ~~~p~~~~~a~i~lvD~pGL~~~a~~g--~gl--g~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 57 IVKPKKIVPATIEFVDIAGLVKGASKG--EGL--GNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hcCCccccCceEEEEECCCCCCCCChH--HHH--HHHHHHHHHhCCEEEEEEeCC
Confidence 00010011 368999999998653211 111 112333478999999999985
No 285
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.95 E-value=1.3e-09 Score=112.43 Aligned_cols=157 Identities=22% Similarity=0.290 Sum_probs=102.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc----------cCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT----------IPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~----------~~g~~~~~ 257 (547)
++.+.+|+ .|..++|+|++|+|||||+++|+|.. .|+.+.+.+ +|..... ..+..+++
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~--------~p~~G~I~i--~G~~i~~~~~~~~~~~rr~~i~~v~ 77 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI--------EPTAGQIFI--DGENIMKQSPVELREVRRKKIGMVF 77 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC--------CCCceEEEE--CCEECCcCCHHHHHHHHhCcEEEEE
Confidence 45555544 89999999999999999999999988 345555443 2321111 23566678
Q ss_pred cCCCCCCCccccccchhh-h------hhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAFLS-K------FECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
+....|..++..+|.... . .+......++++.+.+- + -|+-+|+ ++|++. ++++++.++++
T Consensus 78 Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~-------lARAL~~~p~i 150 (363)
T TIGR01186 78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVG-------LARALAAEPDI 150 (363)
T ss_pred CCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 877777777777765321 1 11122233444444332 2 3555555 566654 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
+|++ +.+.++....++.+.+..+.. .+..+++|.+..|
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999 667665556677777777754 4778888876554
No 286
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.95 E-value=8.3e-10 Score=104.51 Aligned_cols=158 Identities=24% Similarity=0.287 Sum_probs=105.9
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~ 260 (547)
.++++.++. .|..++++|++||||||+++++.+.- +|+.+.+.+ +|.+... ...+..++|..
T Consensus 15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi--------ept~G~I~i--~g~~i~~~d~~~LRr~IGYviQqi 84 (309)
T COG1125 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI--------EPTSGEILI--DGEDISDLDPVELRRKIGYVIQQI 84 (309)
T ss_pred eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc--------CCCCceEEE--CCeecccCCHHHHHHhhhhhhhhc
Confidence 355565554 89999999999999999999998776 566666554 3433323 23455677888
Q ss_pred CCCCCccccccch-------hhhhhhhcccccccccceE-----Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 261 LPFSGLTTFGGAF-------LSKFECSQMSHPLLDQVTF-----VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 261 ~~~~~l~~~~~~~-------~~~~~~~~~~~~ll~~l~l-----vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
-.|+.++...|.- |.+..+.....+++..+.+ .| .|--+|| ++||+. ++|+++.++.++
T Consensus 85 gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVG-------v~RALAadP~il 157 (309)
T COG1125 85 GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVG-------VARALAADPPIL 157 (309)
T ss_pred ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHH-------HHHHHhcCCCeE
Confidence 8888888877753 2333444445555544332 12 4555555 455554 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHH-hCCCCeEEEEeccCC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASL-RGNDDKIRVVLNKAD 363 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l-~~~~~~iivVlNK~D 363 (547)
|.+ |.|.++-......+.+..+ ++.++++++|-+-+|
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid 197 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID 197 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH
Confidence 999 7787744444444555444 456889999988766
No 287
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.94 E-value=1.3e-09 Score=110.59 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=95.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-----cccCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-----RTIPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-----~~~~g~~~~~~~~~~ 262 (547)
++.+.+|. .|.+++|+|++|+|||||+++|+|.. .|+.+.+.+ +|... ........+++....
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL--------RPTSGTARV--AGYDVVREPRKVRRSIGIVPQYASV 77 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEEcccCHHHHHhhcEEecCCCCC
Confidence 55565554 89999999999999999999999987 344444433 22111 011234455666555
Q ss_pred CCCccccccchh-hhh------hhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE-
Q 008954 263 FSGLTTFGGAFL-SKF------ECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL- 329 (547)
Q Consensus 263 ~~~l~~~~~~~~-~~~------~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv- 329 (547)
+..++..++... .+. ........+++.+.+- | .++-.|+ ++|++. ++++++.+++++|++
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~~p~lllLDE 150 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLD-------IAASLIHQPDVLFLDE 150 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHH-------HHHHHhcCCCEEEEeC
Confidence 556665555422 111 0111123344444432 3 2444554 566554 899999999999999
Q ss_pred -ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 330 -FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 330 -~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
+.+.++.....+.++++.+.+.+..++++-+..
T Consensus 151 Pt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~ 184 (302)
T TIGR01188 151 PTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184 (302)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 555554455667778887766677777765543
No 288
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.94 E-value=1.8e-09 Score=106.76 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=61.0
Q ss_pred EEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhc
Q 008954 202 VMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQ 281 (547)
Q Consensus 202 V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (547)
|+|+|.||+|||||+|+|+|.. ..+++.|.||..... |.....+.. +..+ ....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~---~~~~n~pftTi~p~~----------g~v~v~d~r--~~~l-----------~~~~ 54 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG---AEAANYPFCTIEPNV----------GIVPVPDER--LDKL-----------AEIV 54 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC---Cccccccccchhcee----------eeEEeccch--hhhH-----------HHHh
Confidence 5899999999999999999998 678888888754321 111110100 0000 0000
Q ss_pred cccc-ccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCC
Q 008954 282 MSHP-LLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHK 334 (547)
Q Consensus 282 ~~~~-ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~ 334 (547)
-|.. .-.++.++||||+..+..+. +++. ......++++|++++|+|+..
T Consensus 55 ~~~k~~~~~i~lvD~pGl~~~a~~~--~glg--~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 55 KPKKIVPATIEFVDIAGLVKGASKG--EGLG--NKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred CCceeeeeEEEEEECCCcCCCCchh--hHHH--HHHHHHHHhCCEEEEEEeCcC
Confidence 0100 11368999999998753221 1110 112334689999999998753
No 289
>PRK12740 elongation factor G; Reviewed
Probab=98.94 E-value=3.4e-09 Score=119.02 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=53.3
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcC
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVD 366 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~ 366 (547)
.++++||||..+ |...+...+..+|++++++|+.. +.......++..+...+.|+++|+||+|...
T Consensus 61 ~i~liDtPG~~~-----------~~~~~~~~l~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 61 KINLIDTPGHVD-----------FTGEVERALRVLDGAVVVVCAVG-GVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred EEEEEECCCcHH-----------HHHHHHHHHHHhCeEEEEEeCCC-CcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 799999999863 12234555789999999999987 5666777788887778899999999999874
No 290
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.93 E-value=7e-09 Score=99.79 Aligned_cols=98 Identities=16% Similarity=0.079 Sum_probs=57.0
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh--CCCCeEEEEeccCCCcC
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR--GNDDKIRVVLNKADQVD 366 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~--~~~~~iivVlNK~D~~~ 366 (547)
.+.++||||...- ......+...+|++++++|.++...-.....++..+. ..+.|+++|.||+|+..
T Consensus 59 ~i~~~Dt~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 59 CFNVWDTAGQEKF-----------GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred EEEEEECCCchhh-----------hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 6889999996431 1123445678999999999876221122222333322 23578999999999864
Q ss_pred hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 367 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 367 ~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.....+.. .+ .+.. ....+.+||+++.++++
T Consensus 128 ~~~~~~~~-~~----~~~~---~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 128 RQVKARQI-TF----HRKK---NLQYYDISAKSNYNFEK 158 (215)
T ss_pred ccCCHHHH-HH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 32111111 11 1111 22347899999998764
No 291
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=1.7e-09 Score=105.67 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=92.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---------ccCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---------TIPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---------~~~g~~~~~~ 258 (547)
.+.+.+++ .|.+++|+|++|+|||||+|.|+|.. .|+.+.+.+ ++.... ...+...+++
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~~~i~~v~q 84 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL--------RPDSGEVLI--DGEDISGLSEAELYRLRRRMGMLFQ 84 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEEccccChhhHHHHhcceEEEcc
Confidence 55665544 99999999999999999999999987 234444332 221110 0123444555
Q ss_pred CCCCCCCccccccchhhhh--------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 259 ADLPFSGLTTFGGAFLSKF--------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~--------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
....+..++..++...... ........+++.+.+ .+ .|+-+|+ ++|++. ++++++.++++
T Consensus 85 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------ia~al~~~p~l 157 (235)
T cd03261 85 SGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVA-------LARALALDPEL 157 (235)
T ss_pred CcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 5545555555554321100 001111223333333 22 3455554 566554 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
+|++ +.+.++.....+.++++.+.. .+..++++-+..
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~ 197 (235)
T cd03261 158 LLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL 197 (235)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 9999 555554445566677777765 367777776643
No 292
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.92 E-value=2.9e-09 Score=102.21 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=52.0
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
..+.||.|.|+...+-. .+.-+|.+++++-+.-.+..+-.+.=+-.+ .=++|+||+|....
T Consensus 122 ~D~IiiETVGvGQsE~~--------------I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-----aDi~vVNKaD~~gA 182 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEVD--------------IADMADTVVLVLVPGLGDEIQAIKAGIMEI-----ADIFVVNKADRPGA 182 (266)
T ss_dssp -SEEEEEEESSSTHHHH--------------HHTTSSEEEEEEESSTCCCCCTB-TTHHHH------SEEEEE--SHHHH
T ss_pred CCEEEEeCCCCCccHHH--------------HHHhcCeEEEEecCCCccHHHHHhhhhhhh-----ccEEEEeCCChHHH
Confidence 46889999999854311 247899999996553211111111111122 12899999996554
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 368 QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 368 ~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+...+.+.....-.........++++.+||..+.|+++
T Consensus 183 ~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~e 220 (266)
T PF03308_consen 183 DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDE 220 (266)
T ss_dssp HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHH
Confidence 44444333322111111112235668899999999875
No 293
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=1.9e-09 Score=111.29 Aligned_cols=156 Identities=14% Similarity=0.170 Sum_probs=100.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~ 263 (547)
.+.+.++. .|..++|+|++|+|||||+++|+|.. .|+.+.+.+ ++.... ...++.++++....|
T Consensus 19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~--------~p~~G~I~~--~g~~i~~~~~~~r~ig~v~Q~~~lf 88 (356)
T PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE--------RITSGEIWI--GGRVVNELEPADRDIAMVFQNYALY 88 (356)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC--------CCCceEEEE--CCEECCCCCHHHCCEEEEeCCcccc
Confidence 45555554 89999999999999999999999988 344444433 222111 124566778887777
Q ss_pred CCccccccchhh-h------hhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLS-K------FECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..+|.... + .+.......+++.+.+- | .|+-+|+ ++|++. ++++++.+++++|++
T Consensus 89 p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRva-------lARAL~~~P~llLLDEP 161 (356)
T PRK11650 89 PHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVA-------MGRAIVREPAVFLFDEP 161 (356)
T ss_pred CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCC
Confidence 777777775321 1 11112223344444432 2 4566665 566654 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 330 FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
+.+.+........+.++.+.+ .+.++++|-+..
T Consensus 162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 195 (356)
T PRK11650 162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ 195 (356)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 555554445566677776654 377888887654
No 294
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=2.3e-09 Score=104.55 Aligned_cols=157 Identities=18% Similarity=0.250 Sum_probs=92.8
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc----------cCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT----------IPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~----------~~g~~~~~ 257 (547)
.+.+.+|. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... ..+...++
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~i~~~~~~~~~~~~~~~i~~v~ 93 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD--------TPTSGDVIF--NGQPMSKLSSAAKAELRNQKLGFIY 93 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--------CCCceEEEE--CCEEcCcCCHHHHHHHHhccEEEEe
Confidence 45565555 89999999999999999999999986 344454433 2211110 12344455
Q ss_pred cCCCCCCCccccccchhh-------hhhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAFLS-------KFECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
+....+..++..++.... ..........+++.+.+- + .|+-+|+ ++|++. ++++++.++++
T Consensus 94 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~-------la~al~~~p~l 166 (233)
T PRK11629 94 QFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVA-------IARALVNNPRL 166 (233)
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 654445555555554211 001111122333444332 2 3344454 555544 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
+|++ +.+.+........+++..+.. .+..++++-+..+
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 167 VLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 9999 555554445566677777754 4677777766543
No 295
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.91 E-value=2.7e-09 Score=102.54 Aligned_cols=155 Identities=21% Similarity=0.246 Sum_probs=90.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc---------cCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT---------IPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~---------~~g~~~~~~ 258 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|..+++.+ ++..... ..+.....+
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~~i~~~~q 86 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL--------TPSRGQVRI--AGEDVNRLRGRQLPLLRRRIGVVFQ 86 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCEEcccCCHHHHHHHHhheEEEec
Confidence 55665554 89999999999999999999999986 233444332 2211100 123344555
Q ss_pred CCCCCCCccccccchhhh-h------hhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 259 ADLPFSGLTTFGGAFLSK-F------ECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~-~------~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
....+...+..++..... . ........+++.+.+- + .|+-.|+ ++|++. ++++++.+++++
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~ll 159 (214)
T TIGR02673 87 DFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVA-------IARAIVNSPPLL 159 (214)
T ss_pred ChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHHhCCCCEE
Confidence 544444444444432210 0 0011112233333332 2 3344554 556554 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
|++ +.+.+........++++.+.+.+..++++-+.
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 196 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHD 196 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999 55555444566677777776556777776554
No 296
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=2.3e-09 Score=103.60 Aligned_cols=156 Identities=21% Similarity=0.314 Sum_probs=90.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-ccCCceeeecCCCCCCCc
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-TIPGNTIAVHADLPFSGL 266 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-~~~g~~~~~~~~~~~~~l 266 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|.. .|+.+.+.+ .+.... .....+.+++....+...
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~i~~v~q~~~~~~~~ 88 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE--------RPTSGEVLV--DGEPVTGPGPDRGYVFQQDALLPWL 88 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEECccccCcEEEEecccccccCC
Confidence 55665555 89999999999999999999999986 233333332 221110 112344455554444444
Q ss_pred cccccchhh-hh------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecC
Q 008954 267 TTFGGAFLS-KF------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDP 332 (547)
Q Consensus 267 ~~~~~~~~~-~~------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~ 332 (547)
+..++.... .. ........+++.+.+ .+ .|+-.|+ ++|++. ++++++.+++++|++ +.+
T Consensus 89 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~-------la~al~~~p~lllLDEPt~~ 161 (220)
T cd03293 89 TVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVA-------LARALAVDPDVLLLDEPFSA 161 (220)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH-------HHHHHHcCCCEEEECCCCCC
Confidence 444443211 10 001112233334433 23 3455554 566554 899999999999999 555
Q ss_pred CCCCCCHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 333 HKLDISDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 333 ~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
.++.....+.+++..+.. .+..++++-+..
T Consensus 162 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 192 (220)
T cd03293 162 LDALTREQLQEELLDIWRETGKTVLLVTHDI 192 (220)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 554445566677777643 466777766543
No 297
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=3.3e-09 Score=109.33 Aligned_cols=155 Identities=19% Similarity=0.224 Sum_probs=100.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----cccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----RTIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----~~~~g~~~~~~~~~~~ 263 (547)
++++.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++... ....++.++++....|
T Consensus 21 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~--------~p~~G~I~~--~g~~i~~~~~~~r~ig~vfQ~~~lf 90 (351)
T PRK11432 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE--------KPTEGQIFI--DGEDVTHRSIQQRDICMVFQSYALF 90 (351)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC--------CCCceEEEE--CCEECCCCCHHHCCEEEEeCCcccC
Confidence 45555544 89999999999999999999999998 344454433 22211 1124566778887788
Q ss_pred CCccccccchhh-h------hhhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLS-K------FECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..+|.... + .+.......+++.+.+ .| .|.-+|+ ++|++. ++++++.+++++|++
T Consensus 91 p~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVa-------LARaL~~~P~lLLLDEP 163 (351)
T PRK11432 91 PHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVA-------LARALILKPKVLLFDEP 163 (351)
T ss_pred CCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEcCC
Confidence 888877775321 1 1111222333333333 23 4566665 566654 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEecc
Q 008954 330 FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK 361 (547)
+.+.+.....+..+.++.+.+ .+.++++|-+.
T Consensus 164 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 196 (351)
T PRK11432 164 LSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196 (351)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 666665555666777777654 36777777554
No 298
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.91 E-value=2.1e-09 Score=98.14 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=34.5
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEE
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVV 240 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~ 240 (547)
+..|+++|+||+|||||||+|+|... +.+++.|+||+...
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~--~~~~~~~g~T~~~~ 141 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV--CKVAPIPGETKVWQ 141 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc--eeeCCCCCeeEeEE
Confidence 35689999999999999999999887 88899888876543
No 299
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.91 E-value=2.6e-09 Score=104.05 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=91.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+...+++..
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV--------KPDSGKILL--DGQDITKLPMHKRARLGIGYLPQEA 84 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEecccCCHhHHHhccEEEecCCc
Confidence 56666555 89999999999999999999999987 234444332 221100 112344455554
Q ss_pred CCCCCccccccchhhhh-------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEE
Q 008954 261 LPFSGLTTFGGAFLSKF-------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILL 328 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~-------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ill 328 (547)
..+.+++..++...... ........+++.+.+ .++ ++-.|+ ++|++. ++++++.+++++|+
T Consensus 85 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~llll 157 (232)
T cd03218 85 SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVE-------IARALATNPKFLLL 157 (232)
T ss_pred cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEe
Confidence 44555555544322110 001111233333333 222 344443 556554 89999999999999
Q ss_pred E--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 329 L--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 329 v--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+ +.+.+......+.++++.+...+..++++-+.
T Consensus 158 DEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~ 192 (232)
T cd03218 158 DEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN 192 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 9 55555444556677777776656677777664
No 300
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.91 E-value=1e-08 Score=97.09 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=43.2
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHH-HHHHHhC--CCCeEEEEeccCCCc
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKR-VIASLRG--NDDKIRVVLNKADQV 365 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~-ll~~l~~--~~~~iivVlNK~D~~ 365 (547)
.+.|+||+|.... . ...+...+|++|+++|.++...-+.... ++..+.. .+.|+++|.||+|+.
T Consensus 67 ~l~iwDTaG~~~~----~---------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 67 SLRLWDTFGDHDK----D---------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred EEEEEeCCCChhh----h---------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 6899999998531 1 1123589999999999876332232322 3333332 367999999999985
Q ss_pred C
Q 008954 366 D 366 (547)
Q Consensus 366 ~ 366 (547)
.
T Consensus 134 ~ 134 (195)
T cd01873 134 Y 134 (195)
T ss_pred c
Confidence 3
No 301
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.91 E-value=2.3e-09 Score=103.55 Aligned_cols=157 Identities=17% Similarity=0.237 Sum_probs=91.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc----------cCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT----------IPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~----------~~g~~~~~ 257 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... ......++
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~~~i~~v~ 89 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD--------NPTSGEVLF--NGQSLSKLSSNERAKLRNKKLGFIY 89 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEEhhhcCHhHHHHHHHhcEEEEe
Confidence 45555554 89999999999999999999999987 233444332 2211100 02344455
Q ss_pred cCCCCCCCccccccchhh-------hhhhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAFLS-------KFECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
+....+...+..++..+. ..........+++.+.+ .| .|+-+|+ ++|++. ++++++.++++
T Consensus 90 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~i 162 (221)
T TIGR02211 90 QFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVA-------IARALVNQPSL 162 (221)
T ss_pred cccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHHhCCCCE
Confidence 554444444544443221 00001111233333333 23 3455554 566554 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
+|++ +.+.+......+.+++..+.+ .+..++++-+..+
T Consensus 163 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 163 VLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999 555554445566677777654 3667777766543
No 302
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.90 E-value=3.5e-09 Score=93.30 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=109.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEe------CCCccc----cCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMS------GPDERT----IPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~------~~~~~~----~~g~~~~~ 257 (547)
++-|..++ .|..++++||+|+|||||++.|-=.+. +-+ +...+-.+ .+.++. .....+++
T Consensus 17 ~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~s-----g~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvf 88 (242)
T COG4161 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRS-----GTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF 88 (242)
T ss_pred heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCC-----CeEEecccccccccCccHHHHHHHHHhhhhhh
Confidence 45555555 899999999999999999999877663 222 22222111 111111 22345577
Q ss_pred cCCCCCCCccccccchh--------hhhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 258 HADLPFSGLTTFGGAFL--------SKFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
+.-..|+.++..+|..- .+-+......++|+.+.+-| -|=.++| .+||+ .++++++-+++
T Consensus 89 qqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrv-------aiaralmmkpq 161 (242)
T COG4161 89 QQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRV-------AIARALMMEPQ 161 (242)
T ss_pred hhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhH-------HHHHHHhcCCc
Confidence 77778888888777642 22333344556777777666 4555565 34544 48999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCC
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~ 364 (547)
+++|+ ..+.++.++.+...+++.+.+.|..-++|.+-+|.
T Consensus 162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v 203 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203 (242)
T ss_pred EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH
Confidence 99999 66777788889999999999999999998877664
No 303
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.90 E-value=3e-09 Score=103.43 Aligned_cols=159 Identities=22% Similarity=0.299 Sum_probs=105.8
Q ss_pred cCCccccccCCCC--CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCC---C----ccccCCc
Q 008954 183 FNDFVSPFLTNSD--FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGP---D----ERTIPGN 253 (547)
Q Consensus 183 ~~~~~~~~~~~~~--~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~---~----~~~~~g~ 253 (547)
|..+. ++.+.+ +++|..++++|++|||||||++.|.|.+ .|+.+++.+ ++. + ......+
T Consensus 12 ~~~~~--a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe--------~p~~G~I~~--~~~~l~D~~~~~~~~R~V 79 (345)
T COG1118 12 FGAFG--ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE--------TPDAGRIRL--NGRVLFDVSNLAVRDRKV 79 (345)
T ss_pred ccccc--ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC--------CCCCceEEE--CCEeccchhccchhhcce
Confidence 44443 344444 4599999999999999999999999999 455555444 222 1 1224456
Q ss_pred eeeecCCCCCCCccccccc-hhh--------hhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHH
Q 008954 254 TIAVHADLPFSGLTTFGGA-FLS--------KFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWF 319 (547)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~~-~~~--------~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~ 319 (547)
..++|....|..++...|. |-- ..+.....+++|..+.+-+ -|-.+|+ ++|++ ++++++
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRV-------ALARAL 152 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRV-------ALARAL 152 (345)
T ss_pred eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHH-------HHHHHh
Confidence 6788888888888888876 311 1122334455666666655 4555555 45554 489999
Q ss_pred hhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEec
Q 008954 320 AAKCDLILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLN 360 (547)
Q Consensus 320 ~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlN 360 (547)
+..+.++|++ +.+.+.....+....++.+... +.+.++|-+
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 9999999999 5555544556667777766544 777777644
No 304
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.90 E-value=2.6e-09 Score=102.97 Aligned_cols=156 Identities=21% Similarity=0.274 Sum_probs=91.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc----------cCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT----------IPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~----------~~g~~~~~ 257 (547)
.+.+.+|. .|..++|+|++|+|||||+++|+|.. .|+.+.+.+ ++..... ......+.
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~~~i~~~~ 88 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD--------RPTSGEVRV--DGTDISKLSEKELAAFRRRHIGFVF 88 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc--------CCCceeEEE--CCEehhhcchhHHHHHHhhcEEEEe
Confidence 55665554 89999999999999999999999987 234444332 2211100 12344455
Q ss_pred cCCCCCCCccccccchhhh-h------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAFLSK-F------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~-~------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
+....+..++..++..... . ........++..+.+ .|. |+-.|+ ++|++. ++++++.++++
T Consensus 89 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~l 161 (218)
T cd03255 89 QSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVA-------IARALANDPKI 161 (218)
T ss_pred eccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHH-------HHHHHccCCCE
Confidence 5544455555544432110 0 001112233333333 232 444554 566554 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
+|++ +.+.++.....+.+++..+.+ .+..++++-+..
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 162 ILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 9999 555554455666777777765 467777776654
No 305
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=2.9e-09 Score=102.81 Aligned_cols=156 Identities=21% Similarity=0.210 Sum_probs=90.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----c-cCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----T-IPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~-~~g~~~~~~~~~~ 262 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... . ......+++....
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL--------KPTSGRATV--AGHDVVREPREVRRRIGIVFQDLSV 84 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEecCcChHHHhhcEEEecCCccc
Confidence 55665555 89999999999999999999999976 233444332 221110 0 1123344454444
Q ss_pred CCCccccccchhh-hh------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE-
Q 008954 263 FSGLTTFGGAFLS-KF------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL- 329 (547)
Q Consensus 263 ~~~l~~~~~~~~~-~~------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv- 329 (547)
+..++..++.... .. ........+++.+.+ .|+ |+-.|+ +++++. ++++++.+++++|++
T Consensus 85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~-------la~al~~~p~llllDE 157 (220)
T cd03265 85 DDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLE-------IARSLVHRPEVLFLDE 157 (220)
T ss_pred cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEcC
Confidence 4444444443211 00 011112233334433 233 455554 556544 899999999999999
Q ss_pred -ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccC
Q 008954 330 -FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKA 362 (547)
Q Consensus 330 -~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~ 362 (547)
+++.+........+++..+... +..++++-+..
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM 192 (220)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 5565544455666777776654 67777776643
No 306
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.89 E-value=1.1e-07 Score=96.14 Aligned_cols=99 Identities=20% Similarity=0.166 Sum_probs=57.9
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
..+.|+||||....+ . ..+..+|.++++.++. ..++...+...+. +.+.++|+||+|+...
T Consensus 127 ~D~viidT~G~~~~e---~-----------~i~~~aD~i~vv~~~~---~~~el~~~~~~l~--~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 127 YDVIIVETVGVGQSE---V-----------DIANMADTFVVVTIPG---TGDDLQGIKAGLM--EIADIYVVNKADGEGA 187 (300)
T ss_pred CCEEEEeCCCCchhh---h-----------HHHHhhceEEEEecCC---ccHHHHHHHHHHh--hhccEEEEEcccccch
Confidence 468999999986322 1 1256789999886543 2344444444443 4678999999999865
Q ss_pred HHHHHHHHHHHHhhhhccC---CCCcEEEEecccCCCCCCC
Q 008954 368 QQLMRVYGALMWSLGKVLN---TPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 368 ~~l~~~~~~l~~~l~~~~~---~~~v~~v~isa~~~~~l~~ 405 (547)
.........+...+..... ....+.+++||.++.|+++
T Consensus 188 ~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~ 228 (300)
T TIGR00750 188 TNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDE 228 (300)
T ss_pred hHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHH
Confidence 4322111111111111111 1112358999999999875
No 307
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.89 E-value=4.1e-09 Score=99.37 Aligned_cols=158 Identities=17% Similarity=0.204 Sum_probs=89.6
Q ss_pred ccCCCC--CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc--------cccCCceeeecC
Q 008954 190 FLTNSD--FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE--------RTIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~--~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~--------~~~~g~~~~~~~ 259 (547)
.+++.+ +.+|..++|+|++|+|||||+++|+|.. .|+.+.+.+ ++... ....+...+++.
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~i~~~~q~ 76 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL--------RPQSGAVLI--DGEPLDYSRKGLLERRQRVGLVFQD 76 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceeEEE--CCEEccccccchHHHHhhEEEEecC
Confidence 445544 4489999999999999999999999987 233444332 12110 001233444444
Q ss_pred CC-CCCCccccccchhhhh-------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 260 DL-PFSGLTTFGGAFLSKF-------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 260 ~~-~~~~l~~~~~~~~~~~-------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
.. .+...+..++...... ........+++.+.+ .| .|+-.|+ ++|++. ++++++.+++++
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~ll 149 (190)
T TIGR01166 77 PDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVA-------IAGAVAMRPDVL 149 (190)
T ss_pred hhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHH-------HHHHHhcCCCEE
Confidence 31 1112333333321100 000111223333332 33 3455554 556554 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~ 364 (547)
|++ +.+.+........+++..+.+.+..++++-+..+.
T Consensus 150 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 150 LLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999 55555444556677777776667788888776653
No 308
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.89 E-value=7.3e-09 Score=79.82 Aligned_cols=67 Identities=49% Similarity=0.796 Sum_probs=62.6
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhc
Q 008954 19 YREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQA 85 (547)
Q Consensus 19 ~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~ 85 (547)
|+++|..+|++++|+|+.+++..+++..+++.+.+.+++..+|.+++|.|++++|+.++..+..+++
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999998889999999999999999999999999999998887763
No 309
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.89 E-value=2.3e-08 Score=99.79 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=50.6
Q ss_pred hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhh
Q 008954 321 AKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSL 381 (547)
Q Consensus 321 ~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l 381 (547)
.+.+++|+.+.++..++.+-+.++++.+.+. ..+|-|+-|+|....+|+......++..+
T Consensus 132 ~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlIPVI~KaD~lT~~El~~~K~~I~~~i 191 (373)
T COG5019 132 TRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLIPVIAKADTLTDDELAEFKERIREDL 191 (373)
T ss_pred CceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCeeeeeeccccCCHHHHHHHHHHHHHHH
Confidence 4679999999987778899999999999875 78999999999999998887777666533
No 310
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=2.4e-09 Score=110.25 Aligned_cols=157 Identities=21% Similarity=0.273 Sum_probs=94.3
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc---------cCCceeee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT---------IPGNTIAV 257 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~---------~~g~~~~~ 257 (547)
.++.+.+|+ .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... .....+++
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~--------~p~~G~I~~--~g~~i~~~~~~~~~~~~~~ig~v~ 88 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE--------RPTSGRVLV--DGQDLTALSEKELRKARRQIGMIF 88 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEE--CCEECCcCCHHHHHHHhcCEEEEe
Confidence 356666555 89999999999999999999999987 344444433 2211100 12445566
Q ss_pred cCCCCCCCccccccchhh-hh------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAFLS-KF------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~-~~------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
+....+..++..++..+. .. ........+++.+.+ .|. |+-+|+ ++|++. ++++++.++++
T Consensus 89 q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~-------lAraL~~~p~i 161 (343)
T PRK11153 89 QHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVA-------IARALASNPKV 161 (343)
T ss_pred CCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHHHHcCCCE
Confidence 665555555555554221 00 001112233333333 232 444554 566654 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKA 362 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~ 362 (547)
+|++ +.+.++.....+.++++.+... +..++++-+..
T Consensus 162 LlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~ 201 (343)
T PRK11153 162 LLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM 201 (343)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9999 5555544456667777777543 67777776654
No 311
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.88 E-value=3.5e-09 Score=101.57 Aligned_cols=155 Identities=22% Similarity=0.261 Sum_probs=88.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc------ccCCceeeecCC-
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER------TIPGNTIAVHAD- 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~------~~~g~~~~~~~~- 260 (547)
.+.+.++. +|.+++|+|++|+|||||++.|+|.. .|..+.+.+ ++.... .........+..
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~i~~~~q~~~ 85 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--------GPTSGEVLV--DGKDLTKLSLKELRRKVGLVFQNPD 85 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--------CCCCceEEE--CCEEcccCCHHHHHhhceEEecChh
Confidence 45565544 89999999999999999999999987 233444332 221110 012334444443
Q ss_pred CCCCCccccccchhhh-------hhhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEE
Q 008954 261 LPFSGLTTFGGAFLSK-------FECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILL 328 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~-------~~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ill 328 (547)
..+...+..++..... .........+++.+.+ .+ .|+..|+ ++|++. ++++++.+++++|+
T Consensus 86 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------laral~~~p~llll 158 (211)
T cd03225 86 DQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVA-------IAGVLAMDPDILLL 158 (211)
T ss_pred hhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH-------HHHHHhcCCCEEEE
Confidence 1222334444332110 0001111223333333 23 3555665 566554 89999999999999
Q ss_pred E--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 329 L--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 329 v--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+ +.+.++.....+.+++..+.+.+..++++-+.
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~ 193 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHD 193 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 9 55655445566677777776556677776554
No 312
>PLN00023 GTP-binding protein; Provisional
Probab=98.88 E-value=1e-08 Score=102.58 Aligned_cols=129 Identities=16% Similarity=0.196 Sum_probs=76.5
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEE---EEeCCCccccCCceeeecCCCCCCCccccccchh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVV---VMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFL 274 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~---i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 274 (547)
...+|+++|..|||||||++.+++..+ .....||.+.... +..+.. +.. ...+...++
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F---~~~~~pTIG~d~~ik~I~~~~~-----~~~--------~~~ik~d~~--- 80 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSS---IARPPQTIGCTVGVKHITYGSP-----GSS--------SNSIKGDSE--- 80 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCc---ccccCCceeeeEEEEEEEECCc-----ccc--------cccccccCC---
Confidence 346899999999999999999998763 2223344432211 111100 000 000000000
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCC---
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGN--- 351 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~--- 351 (547)
..-.+.|+||+|... |..+...+...+|++|+|+|.++...-+....+++.+...
T Consensus 81 -----------k~v~LqIWDTAGqEr-----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~ 138 (334)
T PLN00023 81 -----------RDFFVELWDVSGHER-----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTF 138 (334)
T ss_pred -----------ceEEEEEEECCCChh-----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhccc
Confidence 001588999999753 2234555678999999999988733333344455544422
Q ss_pred ------------CCeEEEEeccCCCcCh
Q 008954 352 ------------DDKIRVVLNKADQVDT 367 (547)
Q Consensus 352 ------------~~~iivVlNK~D~~~~ 367 (547)
..|+++|.||+|+...
T Consensus 139 s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 139 SAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred ccccccccccCCCCcEEEEEECcccccc
Confidence 3689999999998653
No 313
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=5e-09 Score=94.98 Aligned_cols=148 Identities=18% Similarity=0.257 Sum_probs=92.7
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|..|+|||||+-.+....+ .-...||.+.-.... ++.++. +
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F---~e~~e~TIGaaF~tk-----------tv~~~~-----------~-------- 52 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQF---HENIEPTIGAAFLTK-----------TVTVDD-----------N-------- 52 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCcc---ccccccccccEEEEE-----------EEEeCC-----------c--------
Confidence 5799999999999999999887774 222344544322210 000000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe---EE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK---IR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~---ii 356 (547)
.-.+.|+||+|... |..++..+.+.|+++|+|+|.++...-...++.++.|.....| +.
T Consensus 53 -------~ikfeIWDTAGQER-----------y~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~via 114 (200)
T KOG0092|consen 53 -------TIKFEIWDTAGQER-----------YHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIA 114 (200)
T ss_pred -------EEEEEEEEcCCccc-----------ccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 02678999999853 1234555578999999999998754444556667777655333 55
Q ss_pred EEeccCCCcChHHHHHH-HHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~-~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|-||+|+....++... .... ........+.+||++|.++++
T Consensus 115 lvGNK~DL~~~R~V~~~ea~~y-------Ae~~gll~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 115 LVGNKADLLERREVEFEEAQAY-------AESQGLLFFETSAKTGENVNE 157 (200)
T ss_pred EecchhhhhhcccccHHHHHHH-------HHhcCCEEEEEecccccCHHH
Confidence 69999999874322111 1111 112344557899999999865
No 314
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.87 E-value=4.7e-09 Score=99.28 Aligned_cols=174 Identities=17% Similarity=0.242 Sum_probs=100.3
Q ss_pred chhhhhhhccCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---
Q 008954 174 LKPLEATYRFNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER--- 248 (547)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~--- 248 (547)
++.+...|.-+.+..+++++.+|. .|..++|+|++|+|||||.++|+|.+ .|+++.+.+ +|....
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~--------~p~~G~I~~--~G~~~~~~~ 75 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE--------KPSSGSILL--DGKPLAPKK 75 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc--------CCCCceEEE--CCcccCccc
Confidence 344555554444444677887766 99999999999999999999999999 455555544 221110
Q ss_pred ----ccCCceeeecCC-CCCCCccccccchhhhhh------hhcccccccccceE-----EcCCCCCCh-hhhhhhcccC
Q 008954 249 ----TIPGNTIAVHAD-LPFSGLTTFGGAFLSKFE------CSQMSHPLLDQVTF-----VDTPGVLSG-EKQRTQRTYD 311 (547)
Q Consensus 249 ----~~~g~~~~~~~~-~~~~~l~~~~~~~~~~~~------~~~~~~~ll~~l~l-----vDTPG~~~~-~~~~~~~~~~ 311 (547)
......+++|.. ..+....+.+........ ..+...++++.+.+ -.-|--+|| +.||+.
T Consensus 76 ~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRia---- 151 (252)
T COG1124 76 RAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIA---- 151 (252)
T ss_pred cchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHH----
Confidence 112233344432 112222222211100000 00002223333321 114544554 556654
Q ss_pred hHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCCC
Q 008954 312 FTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKADQ 364 (547)
Q Consensus 312 ~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D~ 364 (547)
++|+++.++.++|++ +.+.|..++.+.++++..+++ ++..+++|-+-.++
T Consensus 152 ---IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~ 204 (252)
T COG1124 152 ---IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL 204 (252)
T ss_pred ---HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH
Confidence 899999999999999 555555566778888888765 46677777665443
No 315
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.87 E-value=2.8e-09 Score=102.74 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=91.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-----cccCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-----RTIPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-----~~~~g~~~~~~~~~~ 262 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+++.+ ++... ........+++....
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~i~~~~q~~~~ 89 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL--------EPDAGFATV--DGFDVVKEPAEARRRLGFVSDSTGL 89 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc--------CCCCceEEE--CCEEcccCHHHHHhhEEEecCCccc
Confidence 55665554 89999999999999999999999987 233444333 11110 001234445555545
Q ss_pred CCCccccccchh-hhh------hhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE-
Q 008954 263 FSGLTTFGGAFL-SKF------ECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL- 329 (547)
Q Consensus 263 ~~~l~~~~~~~~-~~~------~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv- 329 (547)
+..++..++..+ ... ........+++.+.+- + .++-.|+ +++++. ++++++.+++++|++
T Consensus 90 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~illlDE 162 (218)
T cd03266 90 YDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVA-------IARALVHDPPVLLLDE 162 (218)
T ss_pred CcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHH-------HHHHHhcCCCEEEEcC
Confidence 555555554321 110 1111223344444332 2 2333443 555544 899999999999999
Q ss_pred -ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 330 -FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 330 -~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
+.+.+........+++..+.+.+..++++-+..
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 196 (218)
T cd03266 163 PTTGLDVMATRALREFIRQLRALGKCILFSTHIM 196 (218)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 555554445566777777765567777776643
No 316
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.87 E-value=3.7e-09 Score=107.25 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=92.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-----cccCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-----RTIPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-----~~~~g~~~~~~~~~~ 262 (547)
++.+.+|. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ .|... ........+++....
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~i~~v~q~~~~ 88 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI--------SPDRGKITV--LGEPVPSRARLARVAIGVVPQFDNL 88 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEECcccHHHHhhcEEEEeccccC
Confidence 56676655 89999999999999999999999987 234444333 12110 011234445555444
Q ss_pred CCCccccccchh-hhhh------hhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE-
Q 008954 263 FSGLTTFGGAFL-SKFE------CSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL- 329 (547)
Q Consensus 263 ~~~l~~~~~~~~-~~~~------~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv- 329 (547)
+..++..++... .... .......+++.+.+- | .++-+|+ ++|++. ++++++.+++++|++
T Consensus 89 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~~p~lllLDE 161 (303)
T TIGR01288 89 DPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLT-------LARALINDPQLLILDE 161 (303)
T ss_pred CcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHH-------HHHHHhcCCCEEEEeC
Confidence 555555555421 1110 001112233333332 2 2344454 566554 899999999999999
Q ss_pred -ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 330 -FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 330 -~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
+.+.++.....+.+++..+...+..++++-+..
T Consensus 162 Pt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~ 195 (303)
T TIGR01288 162 PTTGLDPHARHLIWERLRSLLARGKTILLTTHFM 195 (303)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 555554455667777877766677777775543
No 317
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=3.9e-09 Score=101.43 Aligned_cols=156 Identities=20% Similarity=0.268 Sum_probs=89.6
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~ 263 (547)
.+.+.+|. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... .......+++....+
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~p~~G~i~~--~g~~~~~~~~~~~~i~~v~q~~~~~ 84 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE--------RPDSGEILI--DGRDVTGVPPERRNIGMVFQDYALF 84 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCeEEEE--CCEEcCcCchhhccEEEEcCchhhc
Confidence 56666555 89999999999999999999999986 233444332 221110 012233445544444
Q ss_pred CCccccccchhhhh-------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLSKF-------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~~~-------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
...+..++...... ........++..+.+ .|. |+-.|+ ++|++. ++++++.+++++|++
T Consensus 85 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~-------la~al~~~p~~lllDEP 157 (213)
T cd03259 85 PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVA-------LARALAREPSLLLLDEP 157 (213)
T ss_pred cCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH-------HHHHHhcCCCEEEEcCC
Confidence 44444444321110 001112233444433 233 344554 566554 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 330 FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
+.+.+........+++..+.+ .+..++++-+..
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 191 (213)
T cd03259 158 LSALDAKLREELREELKELQRELGITTIYVTHDQ 191 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 555554444566677777654 366777766543
No 318
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.87 E-value=8.2e-09 Score=95.78 Aligned_cols=130 Identities=19% Similarity=0.290 Sum_probs=78.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~~ 261 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|..+.+.+ ++..... ........+...
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~i~~~~q~~~ 86 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL--------RPTSGRVRL--DGADISQWDPNELGDHVGYLPQDDE 86 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc--------CCCCCeEEE--CCEEcccCCHHHHHhheEEECCCCc
Confidence 45555544 89999999999999999999999987 233343332 1111000 111222222221
Q ss_pred CCCCccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCH
Q 008954 262 PFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISD 339 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~ 339 (547)
.+.. +.. +.+ +..++++++. ++++++.+++++|++ +.+.+.....
T Consensus 87 ~~~~-tv~------------------~~l-------LS~G~~qrv~-------la~al~~~p~~lllDEPt~~LD~~~~~ 133 (173)
T cd03246 87 LFSG-SIA------------------ENI-------LSGGQRQRLG-------LARALYGNPRILVLDEPNSHLDVEGER 133 (173)
T ss_pred cccC-cHH------------------HHC-------cCHHHHHHHH-------HHHHHhcCCCEEEEECCccccCHHHHH
Confidence 1110 111 111 3334666654 899999999999999 5555544455
Q ss_pred HHHHHHHHHhCCCCeEEEEeccC
Q 008954 340 EFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 340 ~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
...+++..+.+.+..++++-+..
T Consensus 134 ~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 134 ALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCH
Confidence 66777777766566777776643
No 319
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.87 E-value=3.7e-09 Score=101.58 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=91.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---------ccCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---------TIPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---------~~~g~~~~~~ 258 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+...+.+
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~i~~~~~~~~~~~~~~i~~v~q 85 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE--------LPTSGTIRV--NGQDVSDLRGRAIPYLRRKIGVVFQ 85 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCceEEEE--CCEEcccCCHHHHHHHHHheEEEec
Confidence 45555554 89999999999999999999999986 234444332 221110 0123445556
Q ss_pred CCCCCCCccccccchhhh-h------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 259 ADLPFSGLTTFGGAFLSK-F------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~-~------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
....+...+..++..... . ........+++.+.+ .| .|+-.|+ ++|++. ++++++.+++++
T Consensus 86 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~ll 158 (214)
T cd03292 86 DFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVA-------IARAIVNSPTIL 158 (214)
T ss_pred CchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHH-------HHHHHHcCCCEE
Confidence 555555555555542211 0 000111223333332 23 3344554 556554 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
|++ +.+.+........++++.+.+.+..++++-+..
T Consensus 159 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 159 IADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 999 555554445566677777765566777776653
No 320
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.86 E-value=3e-09 Score=103.87 Aligned_cols=156 Identities=22% Similarity=0.287 Sum_probs=90.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-----c--cCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-----T--IPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-----~--~~g~~~~~~~~ 260 (547)
.+.+.+++ .|.+++|+|++|+|||||++.|+|.. .|.++.+.+ ++.... . ..+...+++..
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~i~~v~q~~ 84 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL--------RPTSGSVLF--DGEDITGLPPHEIARLGIGRTFQIP 84 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC--------CCCCceEEE--CCEECCCCCHHHHHhcCEEEEeccc
Confidence 55665554 89999999999999999999999986 233444332 221110 0 12344455555
Q ss_pred CCCCCccccccchhhhh-----------------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHH
Q 008954 261 LPFSGLTTFGGAFLSKF-----------------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISW 318 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~-----------------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~ 318 (547)
..+.+++..++...... ........+++.+.+ .|+ ++-+|+ ++|++. ++++
T Consensus 85 ~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~a 157 (236)
T cd03219 85 RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLE-------IARA 157 (236)
T ss_pred ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHH-------HHHH
Confidence 55555555554321100 001112333333333 222 333443 555544 8999
Q ss_pred HhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 319 FAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 319 ~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
++.+++++|++ +.+.+........+++..+.+.+..++++-+..
T Consensus 158 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 203 (236)
T cd03219 158 LATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM 203 (236)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 99999999999 445544444566677777765567777776643
No 321
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.86 E-value=3.4e-09 Score=110.72 Aligned_cols=161 Identities=15% Similarity=0.147 Sum_probs=94.6
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----cccCCceeeecCCCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----RTIPGNTIAVHADLP 262 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----~~~~g~~~~~~~~~~ 262 (547)
..+++.+|. .|.+++|+|+||+|||||++.|+|.. .|+.+.+.+-...... .....+..+.+....
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll--------~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l 88 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL--------TPTAGTVLVAGDDVEALSARAASRRVASVPQDTSL 88 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC--------CCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCC
Confidence 356666555 89999999999999999999999987 3444544432111100 011234445554433
Q ss_pred CCCccccccchhhhh-----------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 263 FSGLTTFGGAFLSKF-----------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 263 ~~~l~~~~~~~~~~~-----------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
+..++..++..+.+. ........+++.+.+ .|. ++-+|+ ++|++. ++++++.+++++
T Consensus 89 ~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~-------IArAL~~~P~iL 161 (402)
T PRK09536 89 SFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVL-------LARALAQATPVL 161 (402)
T ss_pred CCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHHcCCCEE
Confidence 334444444322110 011112233333333 233 233443 666655 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~ 364 (547)
|++ +.+.++....+..++++.+.+.+..++++.+..+.
T Consensus 162 LLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~ 201 (402)
T PRK09536 162 LLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL 201 (402)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 999 55555444566778888887667778887765443
No 322
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=8.2e-09 Score=113.74 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=90.2
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCC-cccceeEEEEeCCCccccCCceee-ecCCCCCCCccccccchhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPE-PTTDRFVVVMSGPDERTIPGNTIA-VHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~-~~T~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..|+|+|+..+|||||.-.|+-.. -.++.. ...+. ...++........|+++. .-....|.+ +
T Consensus 11 RNigI~aHidaGKTTltE~lL~~t---G~i~k~G~v~~g-~~~~D~~e~EqeRGITI~saa~s~~~~~-----~------ 75 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERILFYT---GIISKIGEVHDG-AATMDWMEQEQERGITITSAATTLFWKG-----D------ 75 (697)
T ss_pred eEEEEEeccCCChHHHHHHHHHHc---CCcCCCccccCC-CccCCCcHHHHhcCCEEeeeeeEEEEcC-----c------
Confidence 459999999999999999998443 111211 11111 111222223345566662 222233332 1
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
..++||||||+.+ |...+...+.-+|..++|+|+.. +...+...+|++..+.+.|.++
T Consensus 76 ----------~~iNlIDTPGHVD-----------Ft~EV~rslrvlDgavvVvdave-GV~~QTEtv~rqa~~~~vp~i~ 133 (697)
T COG0480 76 ----------YRINLIDTPGHVD-----------FTIEVERSLRVLDGAVVVVDAVE-GVEPQTETVWRQADKYGVPRIL 133 (697)
T ss_pred ----------eEEEEeCCCCccc-----------cHHHHHHHHHhhcceEEEEECCC-CeeecHHHHHHHHhhcCCCeEE
Confidence 3899999999985 33445556789999999999987 7888888899999999999999
Q ss_pred EeccCCCcCh
Q 008954 358 VLNKADQVDT 367 (547)
Q Consensus 358 VlNK~D~~~~ 367 (547)
++||+|.+..
T Consensus 134 fiNKmDR~~a 143 (697)
T COG0480 134 FVNKMDRLGA 143 (697)
T ss_pred EEECcccccc
Confidence 9999999854
No 323
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.86 E-value=4.6e-09 Score=108.58 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=101.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCccc--ceeEEEEeCCCcc----ccCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTT--DRFVVVMSGPDER----TIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T--~~~~~i~~~~~~~----~~~g~~~~~~~~~ 261 (547)
++++.++. .|.+++|+|++|+|||||+++|+|... |+. +.+.+ .+.... ...++.++++...
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--------p~~~~G~i~~--~g~~~~~~~~~~r~ig~vfQ~~~ 89 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--------AAGLTGRIAI--ADRDLTHAPPHKRGLALLFQNYA 89 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCCCEEEEE--CCEECCCCCHHHCCEEEEECCcc
Confidence 56665554 899999999999999999999999882 333 43332 222111 1235666778777
Q ss_pred CCCCccccccchhh-h------hhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE
Q 008954 262 PFSGLTTFGGAFLS-K------FECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL 329 (547)
Q Consensus 262 ~~~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv 329 (547)
.|..++..+|.... + .+.......+++.+.+- | .|+-+|+ ++|++. ++++++.+++++|++
T Consensus 90 l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRva-------LARAL~~~P~llLLD 162 (362)
T TIGR03258 90 LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIA-------IARAIAIEPDVLLLD 162 (362)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEc
Confidence 77777777775321 1 11112233444444442 2 4666665 566654 899999999999999
Q ss_pred --ecCCCCCCCHHHHHHHHHHhCC--CCeEEEEeccCC
Q 008954 330 --FDPHKLDISDEFKRVIASLRGN--DDKIRVVLNKAD 363 (547)
Q Consensus 330 --~d~~~~~~~~~~~~ll~~l~~~--~~~iivVlNK~D 363 (547)
+.+.+.....++.+.++.+.+. +.++++|-+..+
T Consensus 163 EP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ 200 (362)
T TIGR03258 163 EPLSALDANIRANMREEIAALHEELPELTILCVTHDQD 200 (362)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 5566545556677777777654 678888766543
No 324
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.86 E-value=3.6e-09 Score=109.18 Aligned_cols=156 Identities=22% Similarity=0.304 Sum_probs=98.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----cccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----RTIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----~~~~g~~~~~~~~~~~ 263 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++... .......++++....|
T Consensus 17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~--------~p~~G~I~i--~g~~i~~~~~~~r~i~~v~Q~~~l~ 86 (353)
T PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE--------HQTSGHIRF--HGTDVSRLHARDRKVGFVFQHYALF 86 (353)
T ss_pred EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEECCCCCHHHCCEEEEecCcccC
Confidence 55565554 89999999999999999999999987 344444433 22211 1123456677777677
Q ss_pred CCccccccchhh-h----------hhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEE
Q 008954 264 SGLTTFGGAFLS-K----------FECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLIL 327 (547)
Q Consensus 264 ~~l~~~~~~~~~-~----------~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~il 327 (547)
..++..+|.... + .+......++++.+.+-+ .|.-+|+ ++|++. ++++++.+++++|
T Consensus 87 p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRva-------lArAL~~~P~llL 159 (353)
T PRK10851 87 RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVA-------LARALAVEPQILL 159 (353)
T ss_pred CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEE
Confidence 777776665321 1 011112233444444422 3444554 566654 8999999999999
Q ss_pred EE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccC
Q 008954 328 LL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKA 362 (547)
Q Consensus 328 lv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~ 362 (547)
++ +.+.+.....+..+++..+.+. +..+++|.+..
T Consensus 160 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 160 LDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197 (353)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99 5555544556666777777654 67777776653
No 325
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.2e-08 Score=92.55 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=96.4
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchh
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFL 274 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 274 (547)
..+...+|+++|.+|+|||.++-.+....+ .....+|-.+..- +.++. ..+.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f----~~~~~sTiGIDFk----------~kti~------l~g~-------- 59 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSF----NTSFISTIGIDFK----------IKTIE------LDGK-------- 59 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccC----cCCccceEEEEEE----------EEEEE------eCCe--------
Confidence 445567899999999999999999987664 1122222221110 00000 0110
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CC
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GN 351 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~ 351 (547)
--.+.++||.|... |..++.++...|+.+++|.|-++-..-+....+++.+. ..
T Consensus 60 ------------~i~lQiWDtaGQer-----------f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~ 116 (207)
T KOG0078|consen 60 ------------KIKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD 116 (207)
T ss_pred ------------EEEEEEEEcccchh-----------HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC
Confidence 02688999999853 34578888999999999999876222233334444444 44
Q ss_pred CCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 352 DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 352 ~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+.++++|-||+|+....++....++- ++.-+ .+..+.+||+.|.++.+
T Consensus 117 ~v~~~LvGNK~D~~~~R~V~~e~ge~---lA~e~---G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 117 DVVKILVGNKCDLEEKRQVSKERGEA---LAREY---GIKFFETSAKTNFNIEE 164 (207)
T ss_pred CCcEEEeeccccccccccccHHHHHH---HHHHh---CCeEEEccccCCCCHHH
Confidence 78899999999998643333222221 12222 34557899999999875
No 326
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.86 E-value=6.6e-09 Score=107.79 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=101.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCC----Cc-----c-----ccCCc
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGP----DE-----R-----TIPGN 253 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~----~~-----~-----~~~g~ 253 (547)
.+.+.+|+ .|.+++|+|++|+|||||+++|+|.. .|+.+.+.+ ++. +. . ...+.
T Consensus 39 ~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~--------~p~~G~I~i--dG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 39 GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN--------PVSRGSVLV--KDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCCcEEEE--CCEecccccccCCHHHHHHHhcCCE
Confidence 45555555 89999999999999999999999987 344555443 221 10 0 01356
Q ss_pred eeeecCCCCCCCccccccchhhh-------hhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhh
Q 008954 254 TIAVHADLPFSGLTTFGGAFLSK-------FECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAA 321 (547)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (547)
.++++....+...+..+|..+.. .+.......+++.+.+-+ .|+-+|+ ++|++. ++++++.
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~-------LARALa~ 181 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVG-------LARAFAM 181 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHhc
Confidence 66777776666667666653221 111122233444444422 4555665 556554 8999999
Q ss_pred cCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 322 KCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 322 ~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
+++++|++ +.+.++....++.+++..+.. .+..++++-+..|
T Consensus 182 ~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 182 DADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999 666665556677777777765 3677888776554
No 327
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.85 E-value=5.6e-09 Score=99.64 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=89.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-----ccCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-----TIPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-----~~~g~~~~~~~~~~ 262 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... .........+....
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--------~p~~G~v~~--~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA--------RPDAGEVLW--QGEPIRRQRDEYHQDLLYLGHQPGI 85 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEEcccchHHhhhheEEeCCcccc
Confidence 55666655 89999999999999999999999987 233443332 221100 01122223333323
Q ss_pred CCCccccccchhh-hh---hhhcccccccccceE---EcCC-CCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ec
Q 008954 263 FSGLTTFGGAFLS-KF---ECSQMSHPLLDQVTF---VDTP-GVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FD 331 (547)
Q Consensus 263 ~~~l~~~~~~~~~-~~---~~~~~~~~ll~~l~l---vDTP-G~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d 331 (547)
+..++..++.... .. ........+++.+.+ .|++ +-.|+ +++++. ++++++.+++++|++ +.
T Consensus 86 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~llllDEPt~ 158 (204)
T PRK13538 86 KTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVA-------LARLWLTRAPLWILDEPFT 158 (204)
T ss_pred CcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHH-------HHHHHhcCCCEEEEeCCCc
Confidence 3333444433111 11 001111223333333 2332 33443 555544 899999999999999 55
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCc
Q 008954 332 PHKLDISDEFKRVIASLRGNDDKIRVVLNKADQV 365 (547)
Q Consensus 332 ~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~ 365 (547)
+.+........+++..+...+.+++++-+..+.+
T Consensus 159 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 192 (204)
T PRK13538 159 AIDKQGVARLEALLAQHAEQGGMVILTTHQDLPV 192 (204)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhh
Confidence 5554444556677777665567788887765544
No 328
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=4.9e-09 Score=102.19 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=91.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---------ccCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---------TIPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---------~~~g~~~~~~ 258 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+++.+.+ ++.... ...+...+++
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~~i~~~~q 89 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE--------RPTSGSVLV--DGTDLTLLSGKELRKARRRIGMIFQ 89 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCEEcccCCHHHHHHHHhheEEEcc
Confidence 55565554 89999999999999999999999987 234444333 221100 0123444555
Q ss_pred CCCCCCCccccccchhhh-h------hhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 259 ADLPFSGLTTFGGAFLSK-F------ECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~-~------~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
....+..++..++..... . ........+++.+.+- | .|.-.|+ +++++. ++++++.+++++
T Consensus 90 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~ll 162 (233)
T cd03258 90 HFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVG-------IARALANNPKVL 162 (233)
T ss_pred CcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHH-------HHHHHhcCCCEE
Confidence 554555555555432110 0 0011122333444332 2 2344443 556554 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKA 362 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~ 362 (547)
|++ +.+.+......+.+++..+.+. +..++++.+..
T Consensus 163 lLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 201 (233)
T cd03258 163 LCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM 201 (233)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 999 5555544455666777776554 66777776643
No 329
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=4.3e-09 Score=100.90 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=87.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc--ccCCceeeecCCCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER--TIPGNTIAVHADLPFSG 265 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~--~~~g~~~~~~~~~~~~~ 265 (547)
.+.+.++. +|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+...+.+....+.+
T Consensus 15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~i~~~~q~~~~~~~ 84 (210)
T cd03269 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII--------LPDSGEVLF--DGKPLDIAARNRIGYLPEERGLYPK 84 (210)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCCchhHHHHccEEEeccCCcCCcC
Confidence 45555544 89999999999999999999999986 234444332 222110 11233344454444444
Q ss_pred ccccccchhh-hh------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ec
Q 008954 266 LTTFGGAFLS-KF------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FD 331 (547)
Q Consensus 266 l~~~~~~~~~-~~------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d 331 (547)
++..++.... .. .......++++.+.+ .++ ++-.|+ +++++. ++++++.+++++|++ +.
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~~lllDEP~~ 157 (210)
T cd03269 85 MKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQ-------FIAAVIHDPELLILDEPFS 157 (210)
T ss_pred CcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCCc
Confidence 5554443211 10 001111223333332 222 334444 555544 899999999999999 55
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 332 PHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 332 ~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
+.+........++++.+...+..++++-+..
T Consensus 158 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 188 (210)
T cd03269 158 GLDPVNVELLKDVIRELARAGKTVILSTHQM 188 (210)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 5554444556677777665566677765543
No 330
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=7.9e-09 Score=95.92 Aligned_cols=131 Identities=21% Similarity=0.223 Sum_probs=79.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-----ccCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-----TIPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-----~~~g~~~~~~~~~~ 262 (547)
.+++.++. +|..++|+|++|+|||||++.|+|.. .|+++.+.+ ++.... ...+...+++....
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL--------KPDSGEIKV--LGKDIKKEPEEVKRRIGYLPEEPSL 84 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCeEEEE--CCEEcccchHhhhccEEEEecCCcc
Confidence 45555554 89999999999999999999999987 233444332 121100 01122333343222
Q ss_pred CCCccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHH
Q 008954 263 FSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDE 340 (547)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~ 340 (547)
+.+.+..++ +. +..++++++. ++++++.+++++|++ +.+.+......
T Consensus 85 ~~~~tv~~~------------------~~------LS~G~~qrv~-------laral~~~p~illlDEPt~~LD~~~~~~ 133 (173)
T cd03230 85 YENLTVREN------------------LK------LSGGMKQRLA-------LAQALLHDPELLILDEPTSGLDPESRRE 133 (173)
T ss_pred ccCCcHHHH------------------hh------cCHHHHHHHH-------HHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 222222221 11 3334666654 899999999999999 55555444566
Q ss_pred HHHHHHHHhCCCCeEEEEecc
Q 008954 341 FKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 341 ~~~ll~~l~~~~~~iivVlNK 361 (547)
..++++.+.+.+..++++-+.
T Consensus 134 l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 134 FWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred HHHHHHHHHHCCCEEEEECCC
Confidence 777787776556666666553
No 331
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=7.9e-09 Score=103.00 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=89.6
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc----------cCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT----------IPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~----------~~g~~~~~ 257 (547)
.+.+.++. .|..++|+|++|+|||||+++|+|.. .|+++.+.+ ++..... ......++
T Consensus 39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~--------~p~~G~i~i--~g~~~~~~~~~~~~~~~~~~i~~v~ 108 (269)
T cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI--------EPTSGKVLI--DGQDIAAMSRKELRELRRKKISMVF 108 (269)
T ss_pred EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCeEEEE--CCEEccccChhhhhhhhcCcEEEEe
Confidence 34555444 89999999999999999999999987 234444333 2211100 12344455
Q ss_pred cCCCCCCCccccccchhhh-h------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAFLSK-F------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~-~------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
+....+..++..++..+.. . ........+++.+.+ .+ .|+-+|+ ++|++. ++++++.++++
T Consensus 109 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~-------lAral~~~p~i 181 (269)
T cd03294 109 QSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVG-------LARALAVDPDI 181 (269)
T ss_pred cCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHH-------HHHHHhcCCCE
Confidence 5544444455444432210 0 001112233334433 23 3455554 666654 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEecc
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNK 361 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK 361 (547)
+|++ +.+.+......+.+++..+... +..++++-+-
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~ 220 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999 5555544445666777776543 5666666553
No 332
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.85 E-value=4.7e-09 Score=102.00 Aligned_cols=156 Identities=18% Similarity=0.281 Sum_probs=90.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc----------cCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT----------IPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~----------~~g~~~~~ 257 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... ..+.....
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~~~~i~~~~ 94 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD--------DGSSGEVSL--VGQPLHQMDEEARAKLRAKHVGFVF 94 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC--------CCCCeeEEE--CCEEcccCCHHHHHHHHhheEEEEE
Confidence 45555544 89999999999999999999999987 234444332 2211100 12344455
Q ss_pred cCCCCCCCccccccchhhh-h------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAFLSK-F------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~-~------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
+....+...+..++..... . ........+++.+.+ .+ .|+-.|+ ++|++. ++++++.++++
T Consensus 95 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~-------la~al~~~p~l 167 (228)
T PRK10584 95 QSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVA-------LARAFNGRPDV 167 (228)
T ss_pred cccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 5544444444444432110 0 001112233333333 23 3455554 556554 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
+|++ +.+.+........+++..+.. .+..++++-+..
T Consensus 168 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 168 LFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 9999 555554445566677777654 366777776654
No 333
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.85 E-value=8.3e-09 Score=107.16 Aligned_cols=156 Identities=19% Similarity=0.293 Sum_probs=100.0
Q ss_pred ccCCCCC--CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCC
Q 008954 190 FLTNSDF--DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~--~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~ 263 (547)
.+.+.++ ..|..++|+|++|+|||||+++|+|.. .|+.+.+.+ ++.... ...++.++++....|
T Consensus 29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~--------~p~~G~I~~--~g~~i~~~~~~~r~ig~vfQ~~~lf 98 (375)
T PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE--------TPDSGRIML--DGQDITHVPAENRHVNTVFQSYALF 98 (375)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEE--CCEECCCCCHHHCCEEEEecCcccC
Confidence 4455444 489999999999999999999999988 344444433 222111 123566678887778
Q ss_pred CCccccccchhh-h------hhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLS-K------FECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..+|.... + .+.......+++.+.+-+ .|.-+|+ ++|++. ++++++.+++++|++
T Consensus 99 p~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVa-------LARaL~~~P~llLLDEP 171 (375)
T PRK09452 99 PHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVA-------IARAVVNKPKVLLLDES 171 (375)
T ss_pred CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCC
Confidence 787777775321 1 111112233444444433 4555665 566654 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 330 FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
+.+.+......+.+.++.+.+ .+.++++|-+..
T Consensus 172 ~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~ 205 (375)
T PRK09452 172 LSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ 205 (375)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 555554445666777777654 477888876653
No 334
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.85 E-value=5.4e-09 Score=99.97 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=91.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---ccCCceeeecCCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---TIPGNTIAVHADLPFS 264 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---~~~g~~~~~~~~~~~~ 264 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|... |+.+.+.+ ++.... ...+.....+....+.
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~i~~--~g~~~~~~~~~~~~~~~~~~~~~~~ 86 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--------PAAGTIKL--DGGDIDDPDVAEACHYLGHRNAMKP 86 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCceEEE--CCEeCcchhhHhhcEEecCCCcCCC
Confidence 45666555 899999999999999999999999872 33333322 221100 0112233333322233
Q ss_pred Cccccccchh-hhhhh--hcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCC
Q 008954 265 GLTTFGGAFL-SKFEC--SQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHK 334 (547)
Q Consensus 265 ~l~~~~~~~~-~~~~~--~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~ 334 (547)
..+..++... ..... ......++..+.+- | .++-.|+ +++++. ++++++.+++++|++ +.+.+
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~llllDEPt~~LD 159 (207)
T PRK13539 87 ALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVA-------LARLLVSNRPIWILDEPTAALD 159 (207)
T ss_pred CCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHH-------HHHHHhcCCCEEEEeCCcccCC
Confidence 3343333211 11100 01112233333332 2 2344554 555544 899999999999999 55555
Q ss_pred CCCCHHHHHHHHHHhCCCCeEEEEeccCCCcC
Q 008954 335 LDISDEFKRVIASLRGNDDKIRVVLNKADQVD 366 (547)
Q Consensus 335 ~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~ 366 (547)
........+++..+.+.+..++++-+..+.+.
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 191 (207)
T PRK13539 160 AAAVALFAELIRAHLAQGGIVIAATHIPLGLP 191 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCchhhc
Confidence 44456667777776656788888888877654
No 335
>PRK13768 GTPase; Provisional
Probab=98.85 E-value=1.5e-08 Score=99.76 Aligned_cols=78 Identities=22% Similarity=0.158 Sum_probs=47.4
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhc--CCeEEEEecCCCCCCCHHHHHHHHHHh-----CCCCeEEEEecc
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAK--CDLILLLFDPHKLDISDEFKRVIASLR-----GNDDKIRVVLNK 361 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~--aD~illv~d~~~~~~~~~~~~ll~~l~-----~~~~~iivVlNK 361 (547)
.+.++||||..+....+.. .....+ .+.. ++++++++|+.. ..+..+......+. ..+.|+++|+||
T Consensus 98 ~~~~~d~~g~~~~~~~~~~----~~~~~~-~l~~~~~~~ii~liD~~~-~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRES----GRKLVE-RLSGSSKSVVVFLIDAVL-AKTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CEEEEeCCcHHHHHhhhHH----HHHHHH-HHHhcCCeEEEEEechHH-hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 6899999998764321111 001122 2233 899999999975 33333322222221 457999999999
Q ss_pred CCCcChHHHHH
Q 008954 362 ADQVDTQQLMR 372 (547)
Q Consensus 362 ~D~~~~~~l~~ 372 (547)
+|.++..+...
T Consensus 172 ~D~~~~~~~~~ 182 (253)
T PRK13768 172 ADLLSEEELER 182 (253)
T ss_pred HhhcCchhHHH
Confidence 99997655433
No 336
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.85 E-value=6e-09 Score=108.31 Aligned_cols=157 Identities=16% Similarity=0.230 Sum_probs=97.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~ 263 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ......++++....|
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~--------~p~~G~I~~--~g~~i~~~~~~~~~i~~v~Q~~~l~ 87 (369)
T PRK11000 18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE--------DITSGDLFI--GEKRMNDVPPAERGVGMVFQSYALY 87 (369)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEE--CCEECCCCCHhHCCEEEEeCCcccC
Confidence 45565554 89999999999999999999999987 344444333 221111 123455677776666
Q ss_pred CCccccccchhh-h------hhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLS-K------FECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..+|.... + .+.......+++.+.+- | .|+-+|+ ++|++. ++++++.+++++|++
T Consensus 88 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRva-------LAraL~~~P~lLLLDEP 160 (369)
T PRK11000 88 PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVA-------IGRTLVAEPSVFLLDEP 160 (369)
T ss_pred CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCC
Confidence 666766665321 1 01111223344444442 3 3555665 666655 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 330 FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
+.+.+........++++.+.. .+.++++|-+..+
T Consensus 161 ts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 555554445566677777654 3677777766543
No 337
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=6.1e-09 Score=102.06 Aligned_cols=157 Identities=19% Similarity=0.245 Sum_probs=89.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---------ccCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---------TIPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---------~~~g~~~~~~ 258 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .|+++.+.+ ++.... ...+...+.+
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~~i~~~~q 85 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV--------EPTSGSVLI--DGTDINKLKGKALRQLRRQIGMIFQ 85 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--------CCCCceEEE--CCEeccccCHhHHHHHHhccEEEcc
Confidence 45555544 89999999999999999999999987 233343332 221111 0123444555
Q ss_pred CCCCCCCccccccchhhhh---------------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHH
Q 008954 259 ADLPFSGLTTFGGAFLSKF---------------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISW 318 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~---------------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~ 318 (547)
....+...+...+...... ........++..+.+ .|. |+-+|+ ++|++. ++++
T Consensus 86 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~a 158 (241)
T cd03256 86 QFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVA-------IARA 158 (241)
T ss_pred cCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHH-------HHHH
Confidence 4444444444444321100 001111223333333 232 344444 666654 8999
Q ss_pred HhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 319 FAAKCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 319 ~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
++.+++++|++ +.+.+......+.+++..+.. .+..++++-+..+
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 206 (241)
T cd03256 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206 (241)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999 555554444566677777654 3677777766543
No 338
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.85 E-value=4.2e-09 Score=100.56 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=88.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc---cccCCceeeecCCC-CC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE---RTIPGNTIAVHADL-PF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~---~~~~g~~~~~~~~~-~~ 263 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+++.+.+ ++... ....+....++... .+
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~i~~~~q~~~~~~ 84 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI--------KESSGSILL--NGKPIKAKERRKSIGYVMQDVDYQL 84 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCceEEEE--CCEEhhhHHhhcceEEEecChhhhh
Confidence 45665544 89999999999999999999999987 234444332 22110 01123344444421 12
Q ss_pred CCccccccchhhh-hh--hhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCC
Q 008954 264 SGLTTFGGAFLSK-FE--CSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPH 333 (547)
Q Consensus 264 ~~l~~~~~~~~~~-~~--~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~ 333 (547)
...+..++..... .. .......+++.+.+- | .|+-.|+ ++|++. ++++++.+++++|++ +.+.
T Consensus 85 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~llllDEPt~~L 157 (205)
T cd03226 85 FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLA-------IAAALLSGKDLLIFDEPTSGL 157 (205)
T ss_pred hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHH-------HHHHHHhCCCEEEEeCCCccC
Confidence 2233333332110 00 001112333333332 3 3455554 666654 899999999999999 5555
Q ss_pred CCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 334 KLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 334 ~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
++.......++++.+...+..++++-+..
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~sH~~ 186 (205)
T cd03226 158 DYKNMERVGELIRELAAQGKAVIVITHDY 186 (205)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 54445566777777755566777776643
No 339
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.85 E-value=6.4e-09 Score=97.38 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=76.3
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc-------cCCceeeecCC---CCCCC
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT-------IPGNTIAVHAD---LPFSG 265 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~-------~~g~~~~~~~~---~~~~~ 265 (547)
+..|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... ......+++.. ..+..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR--------PPASGEITL--DGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 4489999999999999999999999987 233444333 2211100 11223333321 11222
Q ss_pred ccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHH
Q 008954 266 LTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKR 343 (547)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ 343 (547)
++..++. .+.. .+..++++++. ++++++.+++++|++ +.+.+........+
T Consensus 93 ~t~~e~l------------------~~~~--~LS~G~~qrl~-------la~al~~~p~llllDEP~~~LD~~~~~~l~~ 145 (182)
T cd03215 93 LSVAENI------------------ALSS--LLSGGNQQKVV-------LARWLARDPRVLILDEPTRGVDVGAKAEIYR 145 (182)
T ss_pred CcHHHHH------------------HHHh--hcCHHHHHHHH-------HHHHHccCCCEEEECCCCcCCCHHHHHHHHH
Confidence 2222221 0000 03444666654 899999999999999 45555444556677
Q ss_pred HHHHHhCCCCeEEEEeccC
Q 008954 344 VIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 344 ll~~l~~~~~~iivVlNK~ 362 (547)
++..+...+..++++-+..
T Consensus 146 ~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 146 LIRELADAGKAVLLISSEL 164 (182)
T ss_pred HHHHHHHCCCEEEEEeCCH
Confidence 7777765566777765543
No 340
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.7e-08 Score=99.62 Aligned_cols=173 Identities=24% Similarity=0.263 Sum_probs=104.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCC--------CCCCCCcccc----eeEEEEeCCCccccCCceeeecCCCCCCCcc
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPG--------AHIGPEPTTD----RFVVVMSGPDERTIPGNTIAVHADLPFSGLT 267 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~--------~~v~~~~~T~----~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~ 267 (547)
.++..+|.---||||||-.|+-..... ...|..-.|+ .+..+.+|-......|+++.+-- +.++
T Consensus 7 LRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAY----RyFs 82 (431)
T COG2895 7 LRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAY----RYFS 82 (431)
T ss_pred eeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEe----eecc
Confidence 568889999999999999999654310 1112111121 11223333333445566663321 2222
Q ss_pred ccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHH--H
Q 008954 268 TFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRV--I 345 (547)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~l--l 345 (547)
+.. +.+.+.||||+..--+ -...-+..||+.|+++|+.. ++.++.++. +
T Consensus 83 T~K-----------------RkFIiADTPGHeQYTR-----------NMaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I 133 (431)
T COG2895 83 TEK-----------------RKFIIADTPGHEQYTR-----------NMATGASTADLAILLVDARK-GVLEQTRRHSFI 133 (431)
T ss_pred ccc-----------------ceEEEecCCcHHHHhh-----------hhhcccccccEEEEEEecch-hhHHHhHHHHHH
Confidence 221 4799999999953111 11112588999999999976 666665543 3
Q ss_pred HHHhCCCCeEEEEeccCCCcCh-HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCCC
Q 008954 346 ASLRGNDDKIRVVLNKADQVDT-QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 346 ~~l~~~~~~iivVlNK~D~~~~-~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~~ 406 (547)
..|-.- ..+++.+||+|+++- ++..+.+..-...+++.++...+..+|+||+.|.++-..
T Consensus 134 ~sLLGI-rhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~ 194 (431)
T COG2895 134 ASLLGI-RHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSK 194 (431)
T ss_pred HHHhCC-cEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccccc
Confidence 333332 458899999999963 333333333333445666666677899999999998763
No 341
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.84 E-value=4e-09 Score=101.30 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=87.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-ccCCceeeecCCCC--CC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-TIPGNTIAVHADLP--FS 264 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-~~~g~~~~~~~~~~--~~ 264 (547)
.+.+.+++ +|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+...+++.... +.
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--------~p~~G~i~~--~g~~~~~~~~~i~~v~q~~~~~~~~ 83 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL--------KPTSGSIRV--FGKPLEKERKRIGYVPQRRSIDRDF 83 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC--------CCCCCEEEE--CCccHHHHHhheEEeccccccccCC
Confidence 45565554 89999999999999999999999987 233444332 221110 01123333333211 01
Q ss_pred Cccccccchhhh-----------hhhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEE
Q 008954 265 GLTTFGGAFLSK-----------FECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILL 328 (547)
Q Consensus 265 ~l~~~~~~~~~~-----------~~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ill 328 (547)
..+..++..... .........+++.+.+ .+ .|+-+|+ ++|++. ++++++.+++++|+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~~p~llll 156 (213)
T cd03235 84 PISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVL-------LARALVQDPDLLLL 156 (213)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHH-------HHHHHHcCCCEEEE
Confidence 122222221100 0001111222333322 22 3555665 566554 89999999999999
Q ss_pred E--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 329 L--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 329 v--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+ +.+.+......+.+++..+.+.+..++++-+..+
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~ 193 (213)
T cd03235 157 DEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG 193 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9 5555544455666777777655677777766544
No 342
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.84 E-value=5e-09 Score=99.64 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=92.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-----ccCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-----TIPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-----~~~g~~~~~~~~~~ 262 (547)
.+.+.++. +|.+++|+|++|+|||||++.|+|.. .|+.+++.+ .+.... ....++...+....
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--------~~~~G~v~~--~g~~~~~~~~~~~~~i~~~~q~~~~ 85 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL--------NPEKGEILF--ERQSIKKDLCTYQKQLCFVGHRSGI 85 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCeeEEE--CCCccccCHHHHHhheEEecccccc
Confidence 56666555 89999999999999999999999987 234444332 222111 01223333333333
Q ss_pred CCCccccccchhhh-h-hhhcccccccccce---EEcCC-CCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCC
Q 008954 263 FSGLTTFGGAFLSK-F-ECSQMSHPLLDQVT---FVDTP-GVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPH 333 (547)
Q Consensus 263 ~~~l~~~~~~~~~~-~-~~~~~~~~ll~~l~---lvDTP-G~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~ 333 (547)
+...+..++..... . .......++++.+. ..|.+ +-.|+ +++++. ++++++.+++++|++ +.+.
T Consensus 86 ~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~-------laral~~~p~~lilDEP~~~L 158 (200)
T PRK13540 86 NPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVA-------LLRLWMSKAKLWLLDEPLVAL 158 (200)
T ss_pred CcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHH-------HHHHHhcCCCEEEEeCCCccc
Confidence 33444444332110 0 00001122222222 23443 44443 555544 899999999999999 5555
Q ss_pred CCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 334 KLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 334 ~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
+........+++..+++.+..++++-+..+.++.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 159 DELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 5444556667777766567788888777766654
No 343
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.84 E-value=5.1e-09 Score=100.59 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=88.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~ 263 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|.. .|..+.+.+ ++.... ...+...+++....+
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--------~~~~G~v~~--~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE--------EPTSGRIYI--GGRDVTDLPPKDRDIAMVFQNYALY 84 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEECCcCCcccceEEEEecChhhc
Confidence 45565554 89999999999999999999999987 233333332 111100 012234445544444
Q ss_pred CCccccccchhh-hh------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLS-KF------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~-~~------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
...+..++.... .. +.......++..+.+ .| .|+-.|+ ++|++. ++++++.+++++|++
T Consensus 85 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~-------laral~~~p~llllDEP 157 (213)
T cd03301 85 PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVA-------LGRAIVREPKVFLMDEP 157 (213)
T ss_pred cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEcCC
Confidence 444444443211 00 001111223333333 23 3344554 555544 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 330 FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
+.+.++.......+++..+.. .+..++++.+..
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 555554444556667777654 367777776654
No 344
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.84 E-value=9.1e-09 Score=98.82 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=89.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc--------cccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE--------RTIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~--------~~~~g~~~~~~~ 259 (547)
.+.+.+|. +|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++... ....+....++.
T Consensus 15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~i~~~~q~ 84 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE--------EPDSGTIII--DGLKLTDDKKNINELRQKVGMVFQQ 84 (213)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCEECCccchhHHHHHhcceEEecc
Confidence 45565555 89999999999999999999999987 233444332 12110 001234445555
Q ss_pred CCCCCCccccccchhhh--h------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 260 DLPFSGLTTFGGAFLSK--F------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~--~------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
...+...+..++..... . ........++..+.+ .+. |+-.|+ +++++. ++++++.+++++
T Consensus 85 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~ll 157 (213)
T cd03262 85 FNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVA-------IARALAMNPKVM 157 (213)
T ss_pred cccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHH-------HHHHHhcCCCEE
Confidence 44444444444432110 0 000111222333322 232 344444 555544 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
|++ +.+.+........+++..+.+.+..++++-+..
T Consensus 158 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 158 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM 195 (213)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 999 555554444566677777766566777766543
No 345
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.84 E-value=4.2e-09 Score=100.57 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=90.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----------cccCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----------RTIPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----------~~~~g~~~~~ 257 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ .+... ....+...+.
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~~~i~~~~ 82 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE--------KFDSGQVYL--NGKETPPLNSKKASKFRREKLGYLF 82 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--------CCCCeEEEE--CCEEccccchhhHHHHHHhCeeEEe
Confidence 55666555 89999999999999999999999986 234444332 22110 0112344455
Q ss_pred cCCCCCCCccccccchhhh-------hhhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAFLSK-------FECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
+....+...+..++..... .........+++.+.+ .|. ++-.|+ +++++. ++++++.++++
T Consensus 83 q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~-------laral~~~p~l 155 (206)
T TIGR03608 83 QNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVA-------LARAILKDPPL 155 (206)
T ss_pred cchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHH-------HHHHHHcCCCE
Confidence 5544444445544432110 0011111223333332 232 233443 555544 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+|++ +.+.+......+.++++.+.+.+..++++-+..+
T Consensus 156 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 156 ILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999 5555544455666777776655677777766644
No 346
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.84 E-value=8.8e-10 Score=100.69 Aligned_cols=151 Identities=21% Similarity=0.259 Sum_probs=104.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-------cccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-------RTIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-------~~~~g~~~~~~~~ 260 (547)
..++.++. +|..|+++|||||||||.+++++|.- .|..+++.+ ++.+. +..-|.....|+.
T Consensus 19 Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv--------~~d~G~i~l--d~~diT~lPm~~RArlGigYLpQE~ 88 (243)
T COG1137 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV--------RPDSGKILL--DDEDITKLPMHKRARLGIGYLPQEA 88 (243)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE--------ecCCceEEE--CCcccccCChHHHhhcCcccccccc
Confidence 34454444 89999999999999999999999987 344444433 33332 3345888888999
Q ss_pred CCCCCccccccchh--hhh-------hhhcccccccccce---EEcCCCCC-Ch-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 261 LPFSGLTTFGGAFL--SKF-------ECSQMSHPLLDQVT---FVDTPGVL-SG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 261 ~~~~~l~~~~~~~~--~~~-------~~~~~~~~ll~~l~---lvDTPG~~-~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
.-|++++...|... ... +.....+.+|+.+. +-|.||.. || ++.|+ ++|++++.+|..+
T Consensus 89 SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~-------EIARaLa~~P~fi 161 (243)
T COG1137 89 SIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRV-------EIARALAANPKFI 161 (243)
T ss_pred hHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHH-------HHHHHHhcCCCEE
Confidence 99999999888641 111 11112234555543 45566653 43 44444 4899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
+++ |.+-++-.-.+..+++..|+..+.-+++
T Consensus 162 LLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLI 194 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLI 194 (243)
T ss_pred EecCCccCCCchhHHHHHHHHHHHHhCCceEEE
Confidence 999 7777755556778999999988877665
No 347
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=5.3e-09 Score=100.35 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=89.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc-----cCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT-----IPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~-----~~g~~~~~~~~~~ 262 (547)
.+.+.++. +| .++|+|++|+|||||++.|+|.. .|+++.+.+ ++..... ..+...+++....
T Consensus 15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~i~~~~q~~~~ 83 (211)
T cd03264 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT--------PPSSGTIRI--DGQDVLKQPQKLRRRIGYLPQEFGV 83 (211)
T ss_pred EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC--------CCCccEEEE--CCCccccchHHHHhheEEecCCCcc
Confidence 55665555 78 99999999999999999999986 344444433 2221111 1233445555444
Q ss_pred CCCccccccchhh-hh------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE-
Q 008954 263 FSGLTTFGGAFLS-KF------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL- 329 (547)
Q Consensus 263 ~~~l~~~~~~~~~-~~------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv- 329 (547)
+.+++..++.... .+ ........+++.+.+ .|+ |+-.|+ +++++. ++++++.+++++|++
T Consensus 84 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~llllDE 156 (211)
T cd03264 84 YPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVG-------IAQALVGDPSILIVDE 156 (211)
T ss_pred cccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHH-------HHHHHhcCCCEEEEcC
Confidence 5555555443211 00 001112233333333 233 344444 556554 899999999999999
Q ss_pred -ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 330 -FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 330 -~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
+.+.+........++++.+.. +..++++-+..
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~ 189 (211)
T cd03264 157 PTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV 189 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH
Confidence 555554445566777777765 46666665543
No 348
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=8.9e-09 Score=100.80 Aligned_cols=157 Identities=23% Similarity=0.352 Sum_probs=89.8
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----cccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----RTIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----~~~~g~~~~~~~~~~~ 263 (547)
.+.+.+++ .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++... ....+...+.+....+
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~i~~v~q~~~~~ 86 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE--------RPDSGTILF--GGEDATDVPVQERNVGFVFQHYALF 86 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEECCcCCccccceEEEecCCccc
Confidence 55665554 89999999999999999999999987 233443332 22110 0112344455554444
Q ss_pred CCccccccchhhh-h----------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEE
Q 008954 264 SGLTTFGGAFLSK-F----------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLIL 327 (547)
Q Consensus 264 ~~l~~~~~~~~~~-~----------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~il 327 (547)
..++..++..... . ........++..+.+ .+ .|+-.|+ ++|++. ++++++.+++++|
T Consensus 87 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~lll 159 (239)
T cd03296 87 RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVA-------LARALAVEPKVLL 159 (239)
T ss_pred CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH-------HHHHHhcCCCEEE
Confidence 4444444432110 0 000111223333333 23 2344444 566554 8999999999999
Q ss_pred EE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 328 LL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 328 lv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
++ +.+.+........+++..+... +..++++-+..+
T Consensus 160 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 160 LDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 99 5555544445566777776553 677777766543
No 349
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.83 E-value=7.1e-09 Score=99.72 Aligned_cols=158 Identities=19% Similarity=0.174 Sum_probs=87.8
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---ccCCceeeecCCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---TIPGNTIAVHADLPFS 264 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---~~~g~~~~~~~~~~~~ 264 (547)
.+++.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... .........+....+.
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--------~~~~G~i~~--~g~~i~~~~~~~~i~~~~q~~~~~~ 95 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL--------HVESGQIQI--DGKTATRGDRSRFMAYLGHLPGLKA 95 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC--------CCCCeeEEE--CCEEccchhhhhceEEeecCccccc
Confidence 45555444 89999999999999999999999987 233343332 111100 0112333444333344
Q ss_pred Cccccccchhh-hh---hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCC
Q 008954 265 GLTTFGGAFLS-KF---ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPH 333 (547)
Q Consensus 265 ~l~~~~~~~~~-~~---~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~ 333 (547)
.++..++.... .. ........++..+.+ .| .++-+|+ +++++. ++++++.+++++|++ +++.
T Consensus 96 ~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~llllDEPt~~L 168 (214)
T PRK13543 96 DLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLA-------LARLWLSPAPLWLLDEPYANL 168 (214)
T ss_pred CCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCcccC
Confidence 44444443211 00 001111223333332 23 2334444 555544 899999999999999 5555
Q ss_pred CCCCCHHHHHHHHHHhCCCCeEEEEeccCCC
Q 008954 334 KLDISDEFKRVIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 334 ~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~ 364 (547)
+........+++..+.+.+..++++-+..+.
T Consensus 169 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (214)
T PRK13543 169 DLEGITLVNRMISAHLRGGGAALVTTHGAYA 199 (214)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 5444455667777666667777777665543
No 350
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=1.3e-08 Score=94.81 Aligned_cols=133 Identities=20% Similarity=0.309 Sum_probs=78.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc--------cCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT--------IPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~--------~~g~~~~~~~ 259 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... ........+.
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~i~~~~q~ 84 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE--------EPDSGSILI--DGEDLTDLEDELPPLRRRIGMVFQD 84 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEEccccchhHHHHhhcEEEEecC
Confidence 45555544 89999999999999999999999986 334444333 1111000 1122223333
Q ss_pred CCCCCCccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCC
Q 008954 260 DLPFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDI 337 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~ 337 (547)
...+.+.+..+ .+.+. +..|+++++. ++++++.+++++|++ +.+.+...
T Consensus 85 ~~~~~~~t~~~------------------~l~~~----lS~G~~qr~~-------la~al~~~p~llilDEP~~~LD~~~ 135 (178)
T cd03229 85 FALFPHLTVLE------------------NIALG----LSGGQQQRVA-------LARALAMDPDVLLLDEPTSALDPIT 135 (178)
T ss_pred CccCCCCCHHH------------------heeec----CCHHHHHHHH-------HHHHHHCCCCEEEEeCCcccCCHHH
Confidence 22222222111 11111 4445667655 899999999999999 44554444
Q ss_pred CHHHHHHHHHHhCC-CCeEEEEecc
Q 008954 338 SDEFKRVIASLRGN-DDKIRVVLNK 361 (547)
Q Consensus 338 ~~~~~~ll~~l~~~-~~~iivVlNK 361 (547)
.....+++..+.+. +..++++-+.
T Consensus 136 ~~~l~~~l~~~~~~~~~tiii~sH~ 160 (178)
T cd03229 136 RREVRALLKSLQAQLGITVVLVTHD 160 (178)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45666777777655 5666666554
No 351
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.83 E-value=8e-09 Score=106.61 Aligned_cols=156 Identities=23% Similarity=0.274 Sum_probs=100.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~ 263 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+..++++....|
T Consensus 19 ~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~--------~p~~G~I~i--~g~~~~~~~~~~r~ig~v~Q~~~lf 88 (353)
T TIGR03265 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE--------RQTAGTIYQ--GGRDITRLPPQKRDYGIVFQSYALF 88 (353)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC--------CCCceEEEE--CCEECCCCCHHHCCEEEEeCCcccC
Confidence 45555554 89999999999999999999999988 344444433 222111 123566788887788
Q ss_pred CCccccccchhh-h------hhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLS-K------FECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..+|.... + .+......++++.+.+- | .|.-+|+ ++|++. ++++++.+++++|++
T Consensus 89 p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRva-------LARaL~~~P~llLLDEP 161 (353)
T TIGR03265 89 PNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVA-------LARALATSPGLLLLDEP 161 (353)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEcCC
Confidence 888887776321 1 11122233444444432 2 4555555 566654 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 330 FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
+.+.+.....+..+.++.+.+ .+.++++|-+..
T Consensus 162 ~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~ 195 (353)
T TIGR03265 162 LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195 (353)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 555554445666677776654 477888876544
No 352
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.83 E-value=8.4e-09 Score=98.19 Aligned_cols=157 Identities=16% Similarity=0.154 Sum_probs=84.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-----cccCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-----RTIPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-----~~~~g~~~~~~~~~~ 262 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ .+... ....+.....+....
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (201)
T cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS--------PPLAGRVLL--NGGPLDFQRDSIARGLLYLGHAPGI 84 (201)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEecccccHHhhhheEEecccccc
Confidence 45565544 89999999999999999999999987 233343332 11110 011223333333322
Q ss_pred CCCccccccchhh-hhhhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCC
Q 008954 263 FSGLTTFGGAFLS-KFECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHK 334 (547)
Q Consensus 263 ~~~l~~~~~~~~~-~~~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~ 334 (547)
+...+..++.... ..........+++.+.+ .++ ++-.|+ +++++. ++++++.+++++|++ +.+.+
T Consensus 85 ~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~~~p~llllDEPt~~LD 157 (201)
T cd03231 85 KTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVA-------LARLLLSGRPLWILDEPTTALD 157 (201)
T ss_pred CCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCCCCCC
Confidence 3333333332111 00000111222222222 232 233443 555544 899999999999999 44554
Q ss_pred CCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 335 LDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 335 ~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+.......+++..+...+..++++-+..+
T Consensus 158 ~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 158 KAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 44445566677666555667666655433
No 353
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=6.6e-09 Score=105.24 Aligned_cols=160 Identities=19% Similarity=0.233 Sum_probs=93.1
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCC--------------------
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPD-------------------- 246 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~-------------------- 246 (547)
.++++.++. +|..++|+|++|+|||||++.|+|.. .|+.+.+.+...+..
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~--------~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 92 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL--------LPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKT 92 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCCcEEEEeceecccccccccccccccccccccc
Confidence 366666665 89999999999999999999999987 344444443211100
Q ss_pred --------ccccCCceeeecCC-CCCCCccccccchhhh-------hhhhcccccccccceE----Ec-CCCCCCh-hhh
Q 008954 247 --------ERTIPGNTIAVHAD-LPFSGLTTFGGAFLSK-------FECSQMSHPLLDQVTF----VD-TPGVLSG-EKQ 304 (547)
Q Consensus 247 --------~~~~~g~~~~~~~~-~~~~~l~~~~~~~~~~-------~~~~~~~~~ll~~l~l----vD-TPG~~~~-~~~ 304 (547)
.....+...+++.. ..+...+..++..... .+.......++..+.+ .| .|..+|+ ++|
T Consensus 93 ~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkq 172 (305)
T PRK13651 93 RFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKR 172 (305)
T ss_pred cccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH
Confidence 00012334455542 1222223333332111 0111122333334333 22 3444554 555
Q ss_pred hhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 305 RTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++. ++++++.+++++|++ +.+.++.....+.+++..+...+..+++|-+..|
T Consensus 173 rva-------lA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 226 (305)
T PRK13651 173 RVA-------LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226 (305)
T ss_pred HHH-------HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH
Confidence 544 899999999999999 5555544455667788777766778888877654
No 354
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.82 E-value=8.2e-09 Score=99.93 Aligned_cols=159 Identities=15% Similarity=0.125 Sum_probs=89.6
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCcc
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLT 267 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~ 267 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|.. .|+.+.+.+-...-...........++....+...+
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t 86 (223)
T TIGR03740 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL--------RPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLT 86 (223)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEECCEeccccccccEEEEcCCCCccccCC
Confidence 45565544 89999999999999999999999976 234444332111000011123334444444444445
Q ss_pred ccccchhhh-hhh--hcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCC
Q 008954 268 TFGGAFLSK-FEC--SQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDI 337 (547)
Q Consensus 268 ~~~~~~~~~-~~~--~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~ 337 (547)
..++..... ... ......+++.+.+- | .|+-.|+ +++++ .++++++.+++++|++ +.+.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv-------~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 87 ARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRL-------GIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHH-------HHHHHHhcCCCEEEECCCccCCCHHH
Confidence 444432111 000 01112233333332 2 2344443 45544 3899999999999999 55555444
Q ss_pred CHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 338 SDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 338 ~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
.+.+.+++..+...+..++++.+..|
T Consensus 160 ~~~l~~~L~~~~~~~~tiii~sH~~~ 185 (223)
T TIGR03740 160 IQELRELIRSFPEQGITVILSSHILS 185 (223)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 56677777777655667777766433
No 355
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.82 E-value=6.5e-09 Score=99.50 Aligned_cols=156 Identities=20% Similarity=0.167 Sum_probs=88.9
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLP 262 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~ 262 (547)
..+.+.+|. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... .......+++....
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~i~~~~q~~~~ 83 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI--------KPDSGEITF--DGKSYQKNIEALRRIGALIEAPGF 83 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc--------CCCceEEEE--CCCcccchHHHHhhEEEecCCCcc
Confidence 356666555 89999999999999999999999987 233343332 222110 01223344454444
Q ss_pred CCCccccccchhhhh-h--hhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecC
Q 008954 263 FSGLTTFGGAFLSKF-E--CSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDP 332 (547)
Q Consensus 263 ~~~l~~~~~~~~~~~-~--~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~ 332 (547)
+...+..++...... . .......+++.+.+ .+. ++-.|+ +++++. ++++++.+++++|++ +.+
T Consensus 84 ~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 84 YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLG-------IALALLGNPDLLILDEPTNG 156 (208)
T ss_pred CccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHH-------HHHHHhcCCCEEEECCCccc
Confidence 444455444322110 0 01111223333322 232 344454 555544 899999999999999 555
Q ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 333 HKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 333 ~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
.+........+++..+.+.+..++++.+.
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 185 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHL 185 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 55444556667777776556677776554
No 356
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.82 E-value=5.8e-09 Score=103.06 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=89.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc-cCCceeeecCCCCCCCc
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT-IPGNTIAVHADLPFSGL 266 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~-~~g~~~~~~~~~~~~~l 266 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ .+..... .......++....+...
T Consensus 27 il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~i~~v~q~~~l~~~~ 96 (257)
T PRK11247 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE--------TPSAGELLA--GTAPLAEAREDTRLMFQDARLLPWK 96 (257)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCeEEEE--CCEEHHHhhCceEEEecCccCCCCC
Confidence 55565554 89999999999999999999999987 234444332 2211101 12233444544444434
Q ss_pred cccccchhhhh-hhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCC
Q 008954 267 TTFGGAFLSKF-ECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDIS 338 (547)
Q Consensus 267 ~~~~~~~~~~~-~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~ 338 (547)
+..++...... ........+++.+.+- + .|+-+|+ ++|++. ++++++.+++++|++ +.+.+....
T Consensus 97 tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~-------laraL~~~p~lllLDEPt~~LD~~~~ 169 (257)
T PRK11247 97 KVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVA-------LARALIHRPGLLLLDEPLGALDALTR 169 (257)
T ss_pred cHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 44444321100 0011122333333332 2 3455554 556554 899999999999999 555543344
Q ss_pred HHHHHHHHHHh-CCCCeEEEEeccCC
Q 008954 339 DEFKRVIASLR-GNDDKIRVVLNKAD 363 (547)
Q Consensus 339 ~~~~~ll~~l~-~~~~~iivVlNK~D 363 (547)
....+++..+. +.+..++++-+..+
T Consensus 170 ~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 170 IEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 55566676664 34677777766543
No 357
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.82 E-value=1.4e-08 Score=96.23 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=84.1
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc--cCCceeeecCCCCCCCccccccc
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT--IPGNTIAVHADLPFSGLTTFGGA 272 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~--~~g~~~~~~~~~~~~~l~~~~~~ 272 (547)
.+..|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... ........+....+...+..++.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l 91 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIM--------QPSSGNIYY--KNCNINNIAKPYCTYIGHNLGLKLEMTVFENL 91 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC--------CCCCcEEEE--CCcccChhhhhhEEeccCCcCCCccCCHHHHH
Confidence 34589999999999999999999999987 233343332 2211110 01112222221111222333332
Q ss_pred hhhh-hh-hhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHH
Q 008954 273 FLSK-FE-CSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKR 343 (547)
Q Consensus 273 ~~~~-~~-~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ 343 (547)
.... .. .......+++.+.+ .+. ++-.|+ +++++ .++++++.+++++|++ +.+.++.......+
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl-------~la~al~~~p~~lllDEP~~~LD~~~~~~l~~ 164 (195)
T PRK13541 92 KFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIV-------AIARLIACQSDLWLLDEVETNLSKENRDLLNN 164 (195)
T ss_pred HHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHH-------HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1100 00 00011112222222 232 233343 55554 4899999999999999 55555444455566
Q ss_pred HHHHHhCCCCeEEEEeccCCCcCh
Q 008954 344 VIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 344 ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
+++.....+..++++-+..+.+..
T Consensus 165 ~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 165 LIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHhCCCEEEEEeCCccccch
Confidence 666555567788888888877654
No 358
>PRK10908 cell division protein FtsE; Provisional
Probab=98.82 E-value=7.9e-09 Score=99.95 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=89.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc---------cCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT---------IPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~---------~~g~~~~~~ 258 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... ......+++
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~i~~~~~~~~~~~~~~i~~~~q 86 (222)
T PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE--------RPSAGKIWF--SGHDITRLKNREVPFLRRQIGMIFQ 86 (222)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEEcccCChhHHHHHHhheEEEec
Confidence 45555554 89999999999999999999999987 234444332 2211110 123344455
Q ss_pred CCCCCCCccccccchhhh----h---hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 259 ADLPFSGLTTFGGAFLSK----F---ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~----~---~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
....+...+..++..... . ........+++.+.+ .+ .|+-+|+ +++++. ++++++.+++++
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~ll 159 (222)
T PRK10908 87 DHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVG-------IARAVVNKPAVL 159 (222)
T ss_pred CccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHH-------HHHHHHcCCCEE
Confidence 443333444444432110 0 000011223333333 22 3445554 556554 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
|++ +.+.+....+.+.+++..+...+..++++-+..+
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (222)
T PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG 198 (222)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 999 5555544445666777777655667777766543
No 359
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=1.1e-08 Score=98.10 Aligned_cols=152 Identities=20% Similarity=0.294 Sum_probs=88.1
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCCCCccccc
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPFSGLTTFG 270 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~~~l~~~~ 270 (547)
.+.+|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+....++....+.+.+..+
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~--------~~~~G~i~~--~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 89 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFE--------TPQSGRVLI--NGVDVTAAPPADRPVSMLFQENNLFAHLTVEQ 89 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCEEcCcCCHhHccEEEEecccccCCCCcHHH
Confidence 44589999999999999999999999987 233344332 221110 1123444555555555555555
Q ss_pred cchhhhh-------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCC
Q 008954 271 GAFLSKF-------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLD 336 (547)
Q Consensus 271 ~~~~~~~-------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~ 336 (547)
+...... ........+++.+.+ .| .|.-.|+ +++++. ++++++.+++++|++ +.+.+..
T Consensus 90 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------ia~al~~~p~llllDEP~~~LD~~ 162 (211)
T cd03298 90 NVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVA-------LARVLVRDKPVLLLDEPFAALDPA 162 (211)
T ss_pred HHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHH-------HHHHHhcCCCEEEEcCCcccCCHH
Confidence 4321100 001111223333332 23 3444554 556554 899999999999999 5555544
Q ss_pred CCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 337 ISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 337 ~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
......+++..+.. .+..++++-+..+
T Consensus 163 ~~~~l~~~l~~~~~~~~~tii~~sH~~~ 190 (211)
T cd03298 163 LRAEMLDLVLDLHAETKMTVLMVTHQPE 190 (211)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 45566677777654 3667777766443
No 360
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=1.6e-08 Score=96.41 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=84.5
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-----cccCCceeeecCCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-----RTIPGNTIAVHADL 261 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-----~~~~g~~~~~~~~~ 261 (547)
..+.+.++. +|..++|+|++|+|||||++.|+|... +. .|+.+.+.+ ++... ........+.+...
T Consensus 21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~--~~~~G~i~i--~g~~~~~~~~~~~~~i~~~~q~~~ 93 (202)
T cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE---GN--VSVEGDIHY--NGIPYKEFAEKYPGEIIYVSEEDV 93 (202)
T ss_pred eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCC---CC--CCcceEEEE--CCEECccchhhhcceEEEEecccc
Confidence 345555544 899999999999999999999999872 11 133444332 22111 11123344555544
Q ss_pred CCCCccccccchhhhhhhhcccccccccceEEc-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCC
Q 008954 262 PFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDI 337 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~ 337 (547)
.+..++..++...... .. .+ .++-+|+ +++++. ++++++.+++++|++ +.+.+...
T Consensus 94 ~~~~~tv~~~l~~~~~------------~~-~~~~~~~LS~Ge~qrl~-------laral~~~p~llllDEPt~~LD~~~ 153 (202)
T cd03233 94 HFPTLTVRETLDFALR------------CK-GNEFVRGISGGERKRVS-------IAEALVSRASVLCWDNSTRGLDSST 153 (202)
T ss_pred cCCCCcHHHHHhhhhh------------hc-cccchhhCCHHHHHHHH-------HHHHHhhCCCEEEEcCCCccCCHHH
Confidence 4444444444321110 00 23 2333443 556544 899999999999999 55555444
Q ss_pred CHHHHHHHHHHhCC-CCeEEEEecc
Q 008954 338 SDEFKRVIASLRGN-DDKIRVVLNK 361 (547)
Q Consensus 338 ~~~~~~ll~~l~~~-~~~iivVlNK 361 (547)
...+.+++..+.+. +..++++.+.
T Consensus 154 ~~~~~~~l~~~~~~~~~t~ii~~~h 178 (202)
T cd03233 154 ALEILKCIRTMADVLKTTTFVSLYQ 178 (202)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 55667777777554 4455665553
No 361
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=1e-08 Score=101.39 Aligned_cols=156 Identities=15% Similarity=0.222 Sum_probs=88.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcccc-CCceeeecCCCCCCCc
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTI-PGNTIAVHADLPFSGL 266 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~-~g~~~~~~~~~~~~~l 266 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .|+.+++.+ ++...... ......++....+...
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~v~q~~~~~~~~ 85 (255)
T PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV--------PYQHGSITL--DGKPVEGPGAERGVVFQNEGLLPWR 85 (255)
T ss_pred eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEECCCCCCcEEEEeCCCccCCCC
Confidence 45565544 89999999999999999999999987 234444332 22111000 1123344443334444
Q ss_pred cccccchhh-hh------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecC
Q 008954 267 TTFGGAFLS-KF------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDP 332 (547)
Q Consensus 267 ~~~~~~~~~-~~------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~ 332 (547)
+..++.... .. ........++..+.+ .+ .|+-+|+ +++++. ++++++.+++++|++ +.+
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~-------laral~~~p~lllLDEPt~~ 158 (255)
T PRK11248 86 NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVG-------IARALAANPQLLLLDEPFGA 158 (255)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCCcc
Confidence 444443211 00 001112233333333 22 2444554 556554 899999999999999 555
Q ss_pred CCCCCCHHHHHHHHHHh-CCCCeEEEEeccC
Q 008954 333 HKLDISDEFKRVIASLR-GNDDKIRVVLNKA 362 (547)
Q Consensus 333 ~~~~~~~~~~~ll~~l~-~~~~~iivVlNK~ 362 (547)
.+........+++..+. ..+..++++-+..
T Consensus 159 LD~~~~~~l~~~L~~~~~~~g~tviivsH~~ 189 (255)
T PRK11248 159 LDAFTREQMQTLLLKLWQETGKQVLLITHDI 189 (255)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 55444556667777763 3466777776543
No 362
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=4.9e-09 Score=103.64 Aligned_cols=156 Identities=17% Similarity=0.290 Sum_probs=89.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+...+++..
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~i~~~~q~~ 89 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY--------KPTGGTILL--RGQHIEGLPGHQIARMGVVRTFQHV 89 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc--------CCCcceEEE--CCEECCCCCHHHHHhcCeEEeccCc
Confidence 55565554 89999999999999999999999986 234444332 221110 011233345554
Q ss_pred CCCCCccccccchhhhh----------------------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChH
Q 008954 261 LPFSGLTTFGGAFLSKF----------------------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFT 313 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~----------------------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~ 313 (547)
..+.+++...+...... +.......+++.+.+ .| .++-+|+ +++++.
T Consensus 90 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~------ 163 (255)
T PRK11300 90 RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE------ 163 (255)
T ss_pred ccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHH------
Confidence 45555555444322100 000011122223322 22 2334443 555544
Q ss_pred HHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccC
Q 008954 314 GVISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKA 362 (547)
Q Consensus 314 ~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~ 362 (547)
++++++.+++++|++ +.+.+........+++..+.+. +..++++.+..
T Consensus 164 -la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 164 -IARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred -HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 899999999999999 5555544455667777777654 67777776643
No 363
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.81 E-value=9.6e-09 Score=100.78 Aligned_cols=157 Identities=19% Similarity=0.266 Sum_probs=87.8
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc---------cCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT---------IPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~---------~~g~~~~~~ 258 (547)
.+.+.++. .|.+++|+|++|+|||||+++|+|.. .|+.+.+.+ ++..... ......+++
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~~i~~v~q 86 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV--------EPSSGSILL--EGTDITKLRGKKLRKLRRRIGMIFQ 86 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--------CCCccEEEE--CCEEhhhCCHHHHHHHHhheEEEcC
Confidence 55666555 89999999999999999999999987 233343332 2211100 112333444
Q ss_pred CCCCCCCccccccchhhh---------------hhhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHH
Q 008954 259 ADLPFSGLTTFGGAFLSK---------------FECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISW 318 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~---------------~~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~ 318 (547)
....+..++..++..... .........+++.+.+ .|. ++-+|+ +++++. ++++
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~a 159 (243)
T TIGR02315 87 HYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVA-------IARA 159 (243)
T ss_pred CCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH-------HHHH
Confidence 433343444433331100 0001111223333322 232 344444 566554 8999
Q ss_pred HhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 319 FAAKCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 319 ~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
++.+++++|++ +.+.+........+++..+.+ .+..++++-+..+
T Consensus 160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~ 207 (243)
T TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD 207 (243)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 99999999999 555554444566677777654 3667777766543
No 364
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=5.3e-09 Score=102.51 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=88.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|..+++.+ .+.... ...+...+++..
T Consensus 18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~i~~~~q~~ 87 (241)
T PRK10895 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV--------PRDAGNIII--DDEDISLLPLHARARRGIGYLPQEA 87 (241)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEECCCCCHHHHHHhCeEEeccCC
Confidence 55565555 89999999999999999999999987 233444333 221100 012344455554
Q ss_pred CCCCCccccccchhhh-h-------hhhcccccccccceEE---cC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEE
Q 008954 261 LPFSGLTTFGGAFLSK-F-------ECSQMSHPLLDQVTFV---DT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLIL 327 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~-~-------~~~~~~~~ll~~l~lv---DT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~il 327 (547)
..+..++..++..... . ........++..+.+- +. ++-+|+ +++++. ++++++.+++++|
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~lll 160 (241)
T PRK10895 88 SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVE-------IARALAANPKFIL 160 (241)
T ss_pred cccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHH-------HHHHHhcCCCEEE
Confidence 4444445444432110 0 0011122233333332 22 333443 555544 8999999999999
Q ss_pred EE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 328 LL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 328 lv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
++ +.+.+......+.+++..+...+..++++-+.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~ 196 (241)
T PRK10895 161 LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN 196 (241)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcC
Confidence 99 44554444455667777776667777777664
No 365
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.80 E-value=6e-09 Score=100.75 Aligned_cols=155 Identities=22% Similarity=0.260 Sum_probs=89.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.+|. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+...+++..
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL--------PPRSGSIRF--DGRDITGLPPHERARAGIGYVPEGR 84 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCEEcCCCCHHHHHhcCeEEecccc
Confidence 55565554 89999999999999999999999987 244444433 221110 012344455555
Q ss_pred CCCCCccccccchhhh-h----hhhcccccccccce-E---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE
Q 008954 261 LPFSGLTTFGGAFLSK-F----ECSQMSHPLLDQVT-F---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL 329 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~-~----~~~~~~~~ll~~l~-l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv 329 (547)
..+.+++..++..... . ........++..+. + .|+ ++-.|+ +++++. ++++++.+++++|++
T Consensus 85 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~llllD 157 (222)
T cd03224 85 RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLA-------IARALMSRPKLLLLD 157 (222)
T ss_pred ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHH-------HHHHHhcCCCEEEEC
Confidence 4555555554432110 0 00011112222221 1 232 333443 556544 899999999999999
Q ss_pred --ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 330 --FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 330 --~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+.+.+......+.+++..+...+..++++.+.
T Consensus 158 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 191 (222)
T cd03224 158 EPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQN 191 (222)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55555444566677777776556677776554
No 366
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.80 E-value=7e-09 Score=95.84 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=34.9
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeE
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFV 239 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~ 239 (547)
....|+++|.||+|||||||+|+|... +.+++.|+||+..
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~--~~~~~~pg~T~~~ 155 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRA--CNVGATPGVTKSM 155 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccc--ceecCCCCeEcce
Confidence 346799999999999999999999987 7899988887743
No 367
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.80 E-value=1.3e-08 Score=96.73 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=87.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-----ccCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-----TIPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-----~~~g~~~~~~~~~~ 262 (547)
.+++.++. +|..++|+|++|+|||||++.|+|.. .|+.+.+.+ .+.... .........+....
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (198)
T TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL--------RPDSGEVRW--NGTALAEQRDEPHRNILYLGHLPGL 84 (198)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCccEEEE--CCEEcccchHHhhhheEEeccCccc
Confidence 45565554 89999999999999999999999976 233443332 221100 01122333333222
Q ss_pred CCCccccccchhh-hhhh--hcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecC
Q 008954 263 FSGLTTFGGAFLS-KFEC--SQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDP 332 (547)
Q Consensus 263 ~~~l~~~~~~~~~-~~~~--~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~ 332 (547)
+...+..++.... .... ......+++.+.+ .| .++-.|+ +++++. ++++++.+++++|++ +.+
T Consensus 85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 85 KPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLA-------LARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred ccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHH-------HHHHHhcCCCEEEEeCCCcC
Confidence 3333444433111 1100 0011222333322 23 3455554 555544 899999999999999 555
Q ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 333 HKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 333 ~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
.+........+++..+.+.+..++++.+..+
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 5544445566777766555677777777544
No 368
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=6.9e-09 Score=101.77 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=90.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc------------cccCCcee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE------------RTIPGNTI 255 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~------------~~~~g~~~ 255 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|.. .|+++++.+ ++... ....+...
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~~~~~i~~ 86 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE--------MPRSGTLNI--AGNHFDFSKTPSDKAIRELRRNVGM 86 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEecccccccchhhHHHHHhheEE
Confidence 55565555 89999999999999999999999987 344444333 22110 00123444
Q ss_pred eecCCCCCCCccccccchhhh--h------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 256 AVHADLPFSGLTTFGGAFLSK--F------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~~~~--~------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
.++....+.+.+..++..... . ........++..+.+ .|. |+-+|+ +++++. ++++++.+
T Consensus 87 ~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~-------laral~~~ 159 (242)
T PRK11124 87 VFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA-------IARALMME 159 (242)
T ss_pred EecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHHhcC
Confidence 555555555555555432110 0 001111222223322 232 344454 556544 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
++++|++ +.+.+........++++.+.+.+..++++-+..
T Consensus 160 p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 160 PQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999 555554444556677777766566777765543
No 369
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.80 E-value=1e-08 Score=106.02 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=91.1
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----------cccCCceeeecCCCCCC
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----------RTIPGNTIAVHADLPFS 264 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----------~~~~g~~~~~~~~~~~~ 264 (547)
.+..|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++... .......++++....|.
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~--------~p~~G~I~~--~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 89 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSLINAISGLT--------RPQKGRIVL--NGRVLFDAEKGICLPPEKRRIGYVFQDARLFP 89 (352)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEEccccccccccchhhCCEEEEcCCcccCC
Confidence 34589999999999999999999999987 344444332 22110 01224455666655666
Q ss_pred Cccccccchhh-hhhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCC
Q 008954 265 GLTTFGGAFLS-KFECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLD 336 (547)
Q Consensus 265 ~l~~~~~~~~~-~~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~ 336 (547)
.++..++.... +.........+++.+.+- | .|+-+|+ ++|++. ++++++.+++++|++ +.+.+..
T Consensus 90 ~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRva-------laraL~~~p~llLLDEPts~LD~~ 162 (352)
T PRK11144 90 HYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVA-------IGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred CCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHH-------HHHHHHcCCCEEEEcCCcccCCHH
Confidence 66665554221 101111122333333332 2 3555565 566654 899999999999999 5555544
Q ss_pred CCHHHHHHHHHHhCC-CCeEEEEeccC
Q 008954 337 ISDEFKRVIASLRGN-DDKIRVVLNKA 362 (547)
Q Consensus 337 ~~~~~~~ll~~l~~~-~~~iivVlNK~ 362 (547)
....+.++++.+.+. +.++++|-+..
T Consensus 163 ~~~~l~~~L~~l~~~~g~tii~vTHd~ 189 (352)
T PRK11144 163 RKRELLPYLERLAREINIPILYVSHSL 189 (352)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 445666777766543 67777776654
No 370
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=9.7e-09 Score=102.86 Aligned_cols=157 Identities=21% Similarity=0.226 Sum_probs=90.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc------ccCCceeeecCC-
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER------TIPGNTIAVHAD- 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~------~~~g~~~~~~~~- 260 (547)
++.+.++. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+..++++..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~--------~p~~G~i~~--~g~~i~~~~~~~~~~~i~~~~q~~~ 91 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL--------LPEAGTITV--GGMVLSEETVWDVRRQVGMVFQNPD 91 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--------CCCCcEEEE--CCEECCcCcHHHHhhheEEEEeCHH
Confidence 55565554 89999999999999999999999987 344454443 221111 012344455543
Q ss_pred CCCCCccccccchhh-h------hhhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEE
Q 008954 261 LPFSGLTTFGGAFLS-K------FECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILL 328 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ill 328 (547)
..+...+..++.... . .+.......++..+.+ .+ .|+.+|+ +++++. ++++++.+|+++|+
T Consensus 92 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~-------laral~~~p~lllL 164 (279)
T PRK13635 92 NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVA-------IAGVLALQPDIIIL 164 (279)
T ss_pred HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH-------HHHHHHcCCCEEEE
Confidence 123333444443211 0 0000111222333222 22 4566665 555544 89999999999999
Q ss_pred E--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 329 L--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 329 v--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
+ +.+.++.....+.+++..+.+. +..++++.+..+
T Consensus 165 DEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~ 202 (279)
T PRK13635 165 DEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD 202 (279)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 9 5555544455667777777654 667777766543
No 371
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=1.2e-08 Score=106.54 Aligned_cols=157 Identities=20% Similarity=0.290 Sum_probs=97.1
Q ss_pred ccCCCCC--CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc----------cCCceeee
Q 008954 190 FLTNSDF--DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT----------IPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~--~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~----------~~g~~~~~ 257 (547)
++.+.+| ..|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... ......++
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~--------~p~sG~I~i--~G~~i~~~~~~~l~~~~~~~igyv~ 112 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI--------EPTRGQVLI--DGVDIAKISDAELREVRRKKIAMVF 112 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC--------CCCCCEEEE--CCEECCcCCHHHHHHHHhCCEEEEE
Confidence 4555554 489999999999999999999999987 344444433 2221110 12455566
Q ss_pred cCCCCCCCccccccchhh-h------hhhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAFLS-K------FECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
+....|..++..++..+. . ........++++.+.+ .| .|.-+|+ ++|++. ++++++.++++
T Consensus 113 Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~-------LArAL~~~P~i 185 (400)
T PRK10070 113 QSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVG-------LARALAINPDI 185 (400)
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHH-------HHHHHhcCCCE
Confidence 766666666666654321 1 0111122233444433 23 3566665 566654 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
+|++ +.+.++.....+.+++..+.. .+..+++|-+..+
T Consensus 186 LLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 9999 666665455666777777654 4677777766543
No 372
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.79 E-value=1.7e-08 Score=95.27 Aligned_cols=142 Identities=18% Similarity=0.199 Sum_probs=83.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-c-ccCCceeeecCCCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-R-TIPGNTIAVHADLPFSG 265 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-~-~~~g~~~~~~~~~~~~~ 265 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|... . .|+.+.+.+ .+... . .........+....+..
T Consensus 22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~----~~~~G~i~~--~g~~~~~~~~~~i~~~~q~~~~~~~ 93 (192)
T cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT--A----GVITGEILI--NGRPLDKNFQRSTGYVEQQDVHSPN 93 (192)
T ss_pred eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc--C----CCcceEEEE--CCEehHHHhhhceEEecccCccccC
Confidence 45555544 899999999999999999999999752 0 233333332 22110 0 01123334443333334
Q ss_pred ccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHH
Q 008954 266 LTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKR 343 (547)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ 343 (547)
++..++...... .+ .+..++++++. ++++++.+++++|++ +.+.+........+
T Consensus 94 ~tv~~~l~~~~~---------------~~--~LSgGe~qrv~-------la~al~~~p~vlllDEP~~~LD~~~~~~l~~ 149 (192)
T cd03232 94 LTVREALRFSAL---------------LR--GLSVEQRKRLT-------IGVELAAKPSILFLDEPTSGLDSQAAYNIVR 149 (192)
T ss_pred CcHHHHHHHHHH---------------Hh--cCCHHHhHHHH-------HHHHHhcCCcEEEEeCCCcCCCHHHHHHHHH
Confidence 444333211100 01 34445666654 899999999999999 44444444456667
Q ss_pred HHHHHhCCCCeEEEEeccCC
Q 008954 344 VIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 344 ll~~l~~~~~~iivVlNK~D 363 (547)
+++.+.+.+..++++.+..+
T Consensus 150 ~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 150 FLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHcCCEEEEEEcCCh
Confidence 77777655677777766644
No 373
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=9.1e-09 Score=102.80 Aligned_cols=157 Identities=19% Similarity=0.218 Sum_probs=91.6
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCC-
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHAD- 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~- 260 (547)
++++.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... .....++++..
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~i~~v~q~~~ 89 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY--------LPQRGRVKV--MGREVNAENEKWVRSKVGLVFQDPD 89 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--------CCCceEEEE--CCEECCCCCHHHHHhhEEEEecChh
Confidence 56665554 89999999999999999999999987 344444433 2211100 12234445542
Q ss_pred CCCCCccccccchhhhh-------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEE
Q 008954 261 LPFSGLTTFGGAFLSKF-------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILL 328 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~-------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ill 328 (547)
..+...+..++...... ........+++.+.+ .| .|+-+|+ ++|++. ++++++.+++++|+
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~-------laraL~~~p~llll 162 (274)
T PRK13647 90 DQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVA-------IAGVLAMDPDVIVL 162 (274)
T ss_pred hhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEE
Confidence 12223344444321100 001112233333333 22 4555555 555544 89999999999999
Q ss_pred E--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 329 L--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 329 v--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+ +.+.++....++.+++..+...+..++++-+..+
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~ 199 (274)
T PRK13647 163 DEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199 (274)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 9 5555545556777888877655777777766544
No 374
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.79 E-value=7.1e-08 Score=92.82 Aligned_cols=118 Identities=26% Similarity=0.316 Sum_probs=73.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|+.|||||||+|+|.+..+ ..+..|+.+.... +...... .. +
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~---~~~~~~t~~~~~~-----------~~~~~~~-----~~-----~-------- 53 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF---PEGYPPTIGNLDP-----------AKTIEPY-----RR-----N-------- 53 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC---cccCCCceeeeeE-----------EEEEEeC-----CC-----E--------
Confidence 5799999999999999999999885 2222222221111 0000000 00 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH-HHHHHHHhC---CCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF-KRVIASLRG---NDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~-~~ll~~l~~---~~~~i 355 (547)
-.+.++||+|...- ..+...+...++.+++++|........+. ..+...+.. .+.++
T Consensus 54 --------~~~~~~Dt~gq~~~-----------~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~i 114 (219)
T COG1100 54 --------IKLQLWDTAGQEEY-----------RSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPI 114 (219)
T ss_pred --------EEEEeecCCCHHHH-----------HHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceE
Confidence 25889999998642 23455556899999999888752333332 233334433 35899
Q ss_pred EEEeccCCCcChH
Q 008954 356 RVVLNKADQVDTQ 368 (547)
Q Consensus 356 ivVlNK~D~~~~~ 368 (547)
++|.||+|+....
T Consensus 115 ilv~nK~Dl~~~~ 127 (219)
T COG1100 115 LLVGNKIDLFDEQ 127 (219)
T ss_pred EEEecccccccch
Confidence 9999999998654
No 375
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.79 E-value=9e-09 Score=99.39 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=86.9
Q ss_pred ccCCCCC--CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-----cccCCceeeecCCCC
Q 008954 190 FLTNSDF--DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-----RTIPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~--~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-----~~~~g~~~~~~~~~~ 262 (547)
.+.+.++ ..|..++|+|++|+|||||++.|+|.. .|+++.+.+ ++... ........+++....
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~i~~v~q~~~~ 86 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL--------RPTSGTAYI--NGYSIRTDRKAARQSLGYCPQFDAL 86 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEecccchHHHhhhEEEecCcCCc
Confidence 5566554 489999999999999999999999987 234444332 22110 001223344444433
Q ss_pred CCCccccccchhh-hh------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE-
Q 008954 263 FSGLTTFGGAFLS-KF------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL- 329 (547)
Q Consensus 263 ~~~l~~~~~~~~~-~~------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv- 329 (547)
+...+...+.... .. .......++++.+.+ .|+ ++-.|+ +++++. ++++++.+++++|++
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~llllDE 159 (220)
T cd03263 87 FDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLS-------LAIALIGGPSVLLLDE 159 (220)
T ss_pred cccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHH-------HHHHHhcCCCEEEECC
Confidence 4344444433111 00 001112233333333 233 344444 555544 899999999999999
Q ss_pred -ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 330 -FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 330 -~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+.+.+........+++..+.. +..++++-+.
T Consensus 160 P~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~ 191 (220)
T cd03263 160 PTSGLDPASRRAIWDLILEVRK-GRSIILTTHS 191 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCC
Confidence 555554445566677777665 4566666554
No 376
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.79 E-value=3e-08 Score=80.69 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhhCC-CCCCcccHHHHHHHHhh-CC--CCH-HHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcCC
Q 008954 14 EHQKIYREWFDIADS-DGDGRITGNDATKFLGL-SK--LSR-QELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAGR 87 (547)
Q Consensus 14 ee~~~~~~~F~~~D~-~~~G~Is~~e~~~~l~~-~~--l~~-~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g~ 87 (547)
.....+..+|..||. +++|+|+.++++.+++. .+ ++. +++..+++..|.|+||.|+|+||+.++.-+..++|+.
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~~ 83 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKGE 83 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 346789999999999 99999999999999998 43 666 8899999999999999999999999998888888865
No 377
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.79 E-value=1.3e-08 Score=99.20 Aligned_cols=156 Identities=21% Similarity=0.283 Sum_probs=104.5
Q ss_pred cCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----------ccCCceeeec
Q 008954 191 LTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----------TIPGNTIAVH 258 (547)
Q Consensus 191 ~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----------~~~g~~~~~~ 258 (547)
+.+.+++ .|.+.+|+|-+|+|||||+++|-+.. +|+.+.+.+ ++.+.. ....+++++|
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi--------ept~G~ilv--~g~di~~~~~~~Lr~~Rr~~~sMVFQ 113 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI--------EPTRGEILV--DGKDIAKLSAAELRELRRKKISMVFQ 113 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccC--------CCCCceEEE--CCcchhcCCHHHHHHHHhhhhhhhhh
Confidence 4455544 89999999999999999999998876 455555444 332211 1234566778
Q ss_pred CCCCCCCccccccch-------hhhhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 259 ADLPFSGLTTFGGAF-------LSKFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~-------~~~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
..-.++..+...|.- ..+.+......+.++.+.+-+ .|.-+|| ++||+. ++|+++.++|++
T Consensus 114 ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVG-------LARAla~~~~Il 186 (386)
T COG4175 114 SFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVG-------LARALANDPDIL 186 (386)
T ss_pred hhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHH-------HHHHHccCCCEE
Confidence 776666666666652 234444555556666666655 5666665 567655 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHH-hCCCCeEEEEeccCC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASL-RGNDDKIRVVLNKAD 363 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l-~~~~~~iivVlNK~D 363 (547)
|.+ |++.++-+..+..+-+..+ +...++++||-+-.|
T Consensus 187 LMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 187 LMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 999 8888865655555444444 445778888876544
No 378
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.78 E-value=4.9e-08 Score=94.06 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=82.3
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|+.++||||+.+.+.+.-.| ..+..-..|.+... . .+...++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~------------------~-----~v~~~~~--------- 47 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEK------------------S-----HVRFLSF--------- 47 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEE------------------E-----EEECTTS---------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceE------------------E-----EEecCCC---------
Confidence 5899999999999999999987631 00111111111111 0 0000111
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH---HHHHHHh--CCCCeE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK---RVIASLR--GNDDKI 355 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~---~ll~~l~--~~~~~i 355 (547)
-.+.++|.||.......... ........+++++|+|+|+...+..+... +.+..+. .-+.++
T Consensus 48 -------~~l~iwD~pGq~~~~~~~~~------~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v 114 (232)
T PF04670_consen 48 -------LPLNIWDCPGQDDFMENYFN------SQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKV 114 (232)
T ss_dssp -------CEEEEEEE-SSCSTTHTTHT------CCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EE
T ss_pred -------cEEEEEEcCCcccccccccc------ccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 27899999999865322111 01233468999999999998434444333 2333333 236789
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCC--CcEEEEecccCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTP--EVVRVYIGSFNDKP 402 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~--~v~~v~isa~~~~~ 402 (547)
.+.++|+|++.++.....+......+.+..... +...++..|-|+..
T Consensus 115 ~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~S 163 (232)
T PF04670_consen 115 FVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWDES 163 (232)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTSTH
T ss_pred EEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcCcH
Confidence 999999999977655554444443333322211 12346767777764
No 379
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.78 E-value=1.3e-08 Score=98.95 Aligned_cols=151 Identities=18% Similarity=0.271 Sum_probs=85.1
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcccc-CCceeeecCCCCCCCccccccch
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTI-PGNTIAVHADLPFSGLTTFGGAF 273 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~-~g~~~~~~~~~~~~~l~~~~~~~ 273 (547)
.+..|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++...... +....+.+....+...+...+..
T Consensus 7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLA--------QPTSGGVIL--EGKQITEPGPDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCEECCCCChhheEEecCcccCCCCCHHHHHH
Confidence 34589999999999999999999999987 233344332 22111100 11123444443444444444432
Q ss_pred hhh------h---hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCC
Q 008954 274 LSK------F---ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDI 337 (547)
Q Consensus 274 ~~~------~---~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~ 337 (547)
... . ........+++.+.+ .| .++-.|+ ++|++. ++++++.+++++|++ +.+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVA-------IARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 110 0 000111223333333 23 2444554 566554 899999999999999 55555444
Q ss_pred CHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 338 SDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 338 ~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
...+.+++..+.+ .+..++++-+..
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~ 175 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDV 175 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 5566677766654 366777776643
No 380
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.78 E-value=7.7e-09 Score=101.44 Aligned_cols=156 Identities=20% Similarity=0.262 Sum_probs=90.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|.. .|..+++.+ .+.... ...+....++..
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~i~~~~q~~ 86 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT--------RPDEGSVLF--GGTDLTGLPEHQIARAGIGRKFQKP 86 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCCeEEE--CCeecCCCCHHHHHhcCeeEecccc
Confidence 55666555 89999999999999999999999987 234444333 221110 112344455555
Q ss_pred CCCCCccccccchhhhh---------------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHh
Q 008954 261 LPFSGLTTFGGAFLSKF---------------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFA 320 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~---------------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~ 320 (547)
..+.+++..++...... ........++..+.+ .+ .++..|+ +++++. ++++++
T Consensus 87 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~-------laral~ 159 (242)
T TIGR03411 87 TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLE-------IGMLLM 159 (242)
T ss_pred ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHh
Confidence 55555555544321100 011112223333322 12 2344444 555544 899999
Q ss_pred hcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 321 AKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 321 ~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
.+++++|++ +.+.++.......++++.+.. +..++++-+..+
T Consensus 160 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~ 203 (242)
T TIGR03411 160 QDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME 203 (242)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH
Confidence 999999999 555554445566777777765 567777766533
No 381
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1e-08 Score=93.46 Aligned_cols=162 Identities=16% Similarity=0.262 Sum_probs=98.7
Q ss_pred cCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCc--eeeec
Q 008954 183 FNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGN--TIAVH 258 (547)
Q Consensus 183 ~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~--~~~~~ 258 (547)
|......++.+.++. .|..|+++|++|+|||||+|.+.|.- .|..+++.+ +.....-||. .++++
T Consensus 13 y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~--------~P~~G~i~l---~~r~i~gPgaergvVFQ 81 (259)
T COG4525 13 YEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV--------TPSRGSIQL---NGRRIEGPGAERGVVFQ 81 (259)
T ss_pred cCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc--------CcccceEEE---CCEeccCCCccceeEec
Confidence 444334466666555 89999999999999999999999987 333344333 1111123333 34778
Q ss_pred CCCCCCCccccccch-------hhhhhhhcccccccccceEEcCC----CCCC-hhhhhhhcccChHHHHHHHhhcCCeE
Q 008954 259 ADLPFSGLTTFGGAF-------LSKFECSQMSHPLLDQVTFVDTP----GVLS-GEKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~-------~~~~~~~~~~~~ll~~l~lvDTP----G~~~-~~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
.+..+++++...|.- +.+.+.....++.+..+.+-|+- -.+| +++|++. ++++++-++|.+
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvG-------iARALa~eP~~L 154 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVG-------IARALAVEPQLL 154 (259)
T ss_pred cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHH-------HHHHhhcCcceE
Confidence 877777777777752 22333344455555555555543 1122 2456544 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHH-HHhCCCCeEEEEeccC
Q 008954 327 LLL--FDPHKLDISDEFKRVIA-SLRGNDDKIRVVLNKA 362 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~-~l~~~~~~iivVlNK~ 362 (547)
+++ +.+.+-...+...+++- ..+..++.+++|.+-+
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i 193 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI 193 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH
Confidence 998 55554223344444443 3455677777775543
No 382
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.78 E-value=1.3e-08 Score=95.78 Aligned_cols=89 Identities=27% Similarity=0.475 Sum_probs=62.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|-|++|||||+..+.+.. +.......||--.+ | |+..+..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~---SeaA~yeFTTLtcI----------p-------------Gvi~y~g-------- 108 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH---SEAASYEFTTLTCI----------P-------------GVIHYNG-------- 108 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch---hhhhceeeeEEEee----------c-------------ceEEecC--------
Confidence 589999999999999999999877 44444444433222 1 2111111
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCC
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHK 334 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~ 334 (547)
..+.++|.||+.+|..|.-.|+.+. -+.+..||+||.++|+.+
T Consensus 109 --------a~IQllDLPGIieGAsqgkGRGRQv----iavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 109 --------ANIQLLDLPGIIEGASQGKGRGRQV----IAVARTADLILMVLDATK 151 (364)
T ss_pred --------ceEEEecCcccccccccCCCCCceE----EEEeecccEEEEEecCCc
Confidence 3799999999999866655555432 223578999999999976
No 383
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=7e-09 Score=103.61 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=91.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.+|+ .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+..++++..
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~i~~v~q~~ 86 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL--------RPQKGKVLV--SGIDTGDFSKLQGIRKLVGIVFQNP 86 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCceEEE--CCEECCccccHHHHHhheEEEEECh
Confidence 56666655 89999999999999999999999986 234444333 221110 012334444442
Q ss_pred C-CCCCccccccchhhh-------hhhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEE
Q 008954 261 L-PFSGLTTFGGAFLSK-------FECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLIL 327 (547)
Q Consensus 261 ~-~~~~l~~~~~~~~~~-------~~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~il 327 (547)
. .+.+.+..++..... .........+++.+.+ .|+ |+-.|+ ++|++. ++++++.+++++|
T Consensus 87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~-------laral~~~p~lll 159 (274)
T PRK13644 87 ETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVA-------LAGILTMEPECLI 159 (274)
T ss_pred hhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHH-------HHHHHHcCCCEEE
Confidence 2 233334444332110 0011112223333332 343 344554 556554 8999999999999
Q ss_pred EE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 328 LL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 328 lv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++ +.+.++.....+.++++.+...+..++++.+..+
T Consensus 160 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~ 197 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE 197 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 99 5555544445667777777666777777766644
No 384
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.78 E-value=1.2e-08 Score=99.93 Aligned_cols=156 Identities=21% Similarity=0.345 Sum_probs=90.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc--------ccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER--------TIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~--------~~~g~~~~~~~ 259 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+++.+.+ ++.... ...+.+..++.
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~i~~~~q~ 85 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE--------EITSGDLIV--DGLKVNDPKVDERLIRQEAGMVFQQ 85 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEECCcCChhHHHHhhceEEEecc
Confidence 45565555 89999999999999999999999976 344444333 221100 01234445555
Q ss_pred CCCCCCccccccchhhhh--------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 260 DLPFSGLTTFGGAFLSKF--------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~--------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
...+...+..++...... .......++++.+.+ .| .|+-.|+ +++++. ++++++.+++++
T Consensus 86 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~ll 158 (240)
T PRK09493 86 FYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVA-------IARALAVKPKLM 158 (240)
T ss_pred cccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHH-------HHHHHhcCCCEE
Confidence 444444444444321110 001112233333333 22 2344443 555544 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
|++ +.+.+........+++..+.+.+..++++.+..
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 196 (240)
T PRK09493 159 LFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI 196 (240)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 999 555554445566777777765567777776643
No 385
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.77 E-value=3.4e-08 Score=93.41 Aligned_cols=142 Identities=13% Similarity=0.170 Sum_probs=83.5
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---ccCCceeeecCCCCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---TIPGNTIAVHADLPF 263 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---~~~g~~~~~~~~~~~ 263 (547)
+.+.+.++. .|..++|+|++|+|||||++.|+|.. . ..|.++.+.+ ++.... .......+++....+
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~---~---~~~~~G~i~~--~g~~~~~~~~~~~i~~~~q~~~~~ 94 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR---T---GLGVSGEVLI--NGRPLDKRSFRKIIGYVPQDDILH 94 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---C---CCCCceEEEE--CCEeCchHhhhheEEEccCcccCC
Confidence 355565554 88999999999999999999999976 1 1234444333 221110 111233344443333
Q ss_pred CCccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHH
Q 008954 264 SGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEF 341 (547)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~ 341 (547)
.+++..++..... .+. .+..++++++. ++++++.+++++|++ +.+.+.......
T Consensus 95 ~~~t~~~~i~~~~------------~~~-----~LS~G~~qrv~-------laral~~~p~illlDEP~~~LD~~~~~~l 150 (194)
T cd03213 95 PTLTVRETLMFAA------------KLR-----GLSGGERKRVS-------IALELVSNPSLLFLDEPTSGLDSSSALQV 150 (194)
T ss_pred CCCcHHHHHHHHH------------Hhc-----cCCHHHHHHHH-------HHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 3333333321110 000 33444666654 899999999999999 555554445566
Q ss_pred HHHHHHHhCCCCeEEEEeccC
Q 008954 342 KRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 342 ~~ll~~l~~~~~~iivVlNK~ 362 (547)
.++++.+.+.+..++++.+..
T Consensus 151 ~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 151 MSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred HHHHHHHHhCCCEEEEEecCc
Confidence 677777765566777776643
No 386
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.77 E-value=1.5e-08 Score=99.95 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=88.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc--------------cccCCc
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE--------------RTIPGN 253 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~--------------~~~~g~ 253 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. . |+.+.+.+ ++... ....+.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~-----~~~G~i~~--~g~~~~~~~~~~~~~~~~~~~~~~i 87 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE---Q-----PEAGTIRV--GDITIDTARSLSQQKGLIRQLRQHV 87 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---C-----CCCeEEEE--CCEEccccccccchhhHHHHhhhhE
Confidence 56666555 89999999999999999999999986 2 33333322 11100 001233
Q ss_pred eeeecCCCCCCCccccccchhhhh--------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHh
Q 008954 254 TIAVHADLPFSGLTTFGGAFLSKF--------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFA 320 (547)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~ 320 (547)
..+.+....+...+..++...... ........+++.+.+ .|. ++-+|+ ++|++. ++++++
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~-------la~al~ 160 (250)
T PRK11264 88 GFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVA-------IARALA 160 (250)
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHH-------HHHHHh
Confidence 444555444444454444322110 001112233333332 233 344444 556554 899999
Q ss_pred hcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 321 AKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 321 ~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
.+++++|++ +.+.+........+++..+...+..++++-+.
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 999999999 55555444456667777776656677776554
No 387
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=1.9e-08 Score=104.68 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=97.6
Q ss_pred ccCCCCC--CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCC
Q 008954 190 FLTNSDF--DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~--~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~ 263 (547)
.+.+.++ ..|..++|+|++|+|||||+++|+|.. .|+.+.+.+ ++.... ...+..++++....|
T Consensus 34 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~--------~p~~G~I~i--~g~~i~~~~~~~r~ig~vfQ~~~lf 103 (377)
T PRK11607 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE--------QPTAGQIML--DGVDLSHVPPYQRPINMMFQSYALF 103 (377)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEE--CCEECCCCCHHHCCEEEEeCCCccC
Confidence 3444444 489999999999999999999999998 344444433 222111 123566788887888
Q ss_pred CCccccccchhh-h------hhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLS-K------FECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..+|.... + .+.......+++.+.+- | .|.-+|+ ++|++. ++++++.+++++|++
T Consensus 104 p~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVa-------LARAL~~~P~lLLLDEP 176 (377)
T PRK11607 104 PHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVA-------LARSLAKRPKLLLLDEP 176 (377)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCC
Confidence 888888876321 1 11112223444444443 2 4555555 666654 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHh-CCCCeEEEEecc
Q 008954 330 FDPHKLDISDEFKRVIASLR-GNDDKIRVVLNK 361 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~-~~~~~iivVlNK 361 (547)
+.+.+........+.+..+. +.+.++++|-+.
T Consensus 177 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 209 (377)
T PRK11607 177 MGALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209 (377)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 55555444445555555543 457777777554
No 388
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.77 E-value=1.7e-08 Score=98.69 Aligned_cols=158 Identities=17% Similarity=0.174 Sum_probs=90.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-----cccCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-----RTIPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-----~~~~g~~~~~~~~~~ 262 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++... .........++....
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~p~~G~i~~--~g~~i~~~~~~~~~~i~~~~q~~~~ 85 (236)
T TIGR03864 16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY--------VAQEGQISV--AGHDLRRAPRAALARLGVVFQQPTL 85 (236)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--------CCCceEEEE--CCEEcccCChhhhhhEEEeCCCCCC
Confidence 45555544 89999999999999999999999987 234444332 12110 011233344454333
Q ss_pred CCCccccccchhh-hh------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE-
Q 008954 263 FSGLTTFGGAFLS-KF------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL- 329 (547)
Q Consensus 263 ~~~l~~~~~~~~~-~~------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv- 329 (547)
+...+...+.... .. ........+++.+.+ .| .++-.|+ ++|++. ++++++.+++++|++
T Consensus 86 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~-------laral~~~p~llllDE 158 (236)
T TIGR03864 86 DLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVE-------IARALLHRPALLLLDE 158 (236)
T ss_pred cccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEcC
Confidence 3344444443211 00 011112233333332 22 2344554 556544 899999999999999
Q ss_pred -ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCCC
Q 008954 330 -FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKADQ 364 (547)
Q Consensus 330 -~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D~ 364 (547)
+.+.+......+.+++..+.+ .+..++++-+..+.
T Consensus 159 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 195 (236)
T TIGR03864 159 PTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE 195 (236)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 555554445566677777753 46777777665543
No 389
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.77 E-value=1.7e-08 Score=97.94 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=88.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---------ccCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---------TIPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---------~~~g~~~~~~ 258 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .|+++.+.+ ++.... .......+.+
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~~i~~~~q 89 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL--------KPTSGSIIF--DGKDLLKLSRRLRKIRRKEIQMVFQ 89 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCEEccccchhhHHHhhccEEEEec
Confidence 56665555 89999999999999999999999987 234444333 221110 0123344444
Q ss_pred CC--CCCCCccccccchhhh--------hhhhcc-cccccccceE----EcC-CCCCCh-hhhhhhcccChHHHHHHHhh
Q 008954 259 AD--LPFSGLTTFGGAFLSK--------FECSQM-SHPLLDQVTF----VDT-PGVLSG-EKQRTQRTYDFTGVISWFAA 321 (547)
Q Consensus 259 ~~--~~~~~l~~~~~~~~~~--------~~~~~~-~~~ll~~l~l----vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (547)
.. ..+..++...+..... ...... ...++..+.+ .+. |+-.|+ ++|++. ++++++.
T Consensus 90 ~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~-------laral~~ 162 (228)
T cd03257 90 DPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVA-------IARALAL 162 (228)
T ss_pred CchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHH-------HHHHHhc
Confidence 43 1222334333332110 000000 0123333333 232 344554 566554 8999999
Q ss_pred cCCeEEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 322 KCDLILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 322 ~aD~illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
+++++|++ +.+.+......+.+++..+.+. +..++++.+..+
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 207 (228)
T cd03257 163 NPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG 207 (228)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 99999999 5555544445666777776554 677777766543
No 390
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=1.1e-08 Score=102.56 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=92.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc------ccCCceeeecCC-
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER------TIPGNTIAVHAD- 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~------~~~g~~~~~~~~- 260 (547)
++.+.++. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ......++++..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~i~~~~~~~~~~~i~~v~q~~~ 91 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL--------EAESGQIII--DGDLLTEENVWDIRHKIGMVFQNPD 91 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCcEEEE--CCEECCcCcHHHHHhhceEEEcChH
Confidence 56666655 89999999999999999999999987 234444333 221110 012344455543
Q ss_pred CCCCCccccccchhhh-------hhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEE
Q 008954 261 LPFSGLTTFGGAFLSK-------FECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILL 328 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~-------~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ill 328 (547)
..+...+..++..... .+.......++..+.+- | .|+-+|+ ++|++. ++++++.+++++|+
T Consensus 92 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~-------lAral~~~p~lLlL 164 (279)
T PRK13650 92 NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVA-------IAGAVAMRPKIIIL 164 (279)
T ss_pred HhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH-------HHHHHHcCCCEEEE
Confidence 2333334444432110 00111122333333332 2 3455554 556554 89999999999999
Q ss_pred E--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 329 L--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 329 v--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
+ +.+.+......+.+++..+... +..++++.+..+
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~ 202 (279)
T PRK13650 165 DEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD 202 (279)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 9 5555544455666777777653 778888877654
No 391
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=3.1e-08 Score=90.28 Aligned_cols=151 Identities=16% Similarity=0.179 Sum_probs=90.3
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
-.+|.|+|..|+|||-|+-.+.+..++. + ...|-.+-+. ...+...|..
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e---~-~~sTIGVDf~---------------------~rt~e~~gk~------ 57 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTE---S-YISTIGVDFK---------------------IRTVELDGKT------ 57 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcch---h-hcceeeeEEE---------------------EEEeeecceE------
Confidence 3679999999999999999999887521 1 1112111110 0011111110
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~~i 355 (547)
-.+.++||+|... |..++..+-+.|+.||+|+|-++-..-......+..+.+ .+.+.
T Consensus 58 ---------iKlQIWDTAGQER-----------Frtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~ 117 (205)
T KOG0084|consen 58 ---------IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPK 117 (205)
T ss_pred ---------EEEEeeeccccHH-----------HhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCe
Confidence 2689999999831 345777788999999999998872222233344444443 36789
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|-||+|+.+...+......- .+...+.+ +.+.+||+.+.++++
T Consensus 118 lLVGNK~Dl~~~~~v~~~~a~~---fa~~~~~~--~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 118 LLVGNKCDLTEKRVVSTEEAQE---FADELGIP--IFLETSAKDSTNVED 162 (205)
T ss_pred EEEeeccccHhheecCHHHHHH---HHHhcCCc--ceeecccCCccCHHH
Confidence 9999999998653222111110 11112211 147899999886654
No 392
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=2.2e-08 Score=98.74 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=90.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc------cccCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE------RTIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~------~~~~g~~~~~~~~~ 261 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|... +....|+++.+.+ ++... ....+...+++...
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~--~g~~i~~~~~~~~~~~i~~v~q~~~ 92 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYL--DGQDIFKMDVIELRRRVQMVFQIPN 92 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEE--CCEECCcCCHHHHhccEEEEeccCc
Confidence 56666655 899999999999999999999999862 1111134444333 22111 11123445555544
Q ss_pred CCCCccccccchhhh-h--------hhhcccccccccceE-------EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 262 PFSGLTTFGGAFLSK-F--------ECSQMSHPLLDQVTF-------VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~-~--------~~~~~~~~ll~~l~l-------vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
.+...+..++..+.. . +.......+++.+.+ .|+ ++-.|+ ++|++. ++++++.++
T Consensus 93 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~-------laral~~~p 165 (250)
T PRK14247 93 PIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC-------IARALAFQP 165 (250)
T ss_pred cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH-------HHHHHhcCC
Confidence 455555555542211 0 000111223333332 233 344444 556554 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+++|++ +.+.+........+++..+.. +..++++.+.
T Consensus 166 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~ 204 (250)
T PRK14247 166 EVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHF 204 (250)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 999999 555554445666677777754 5666666554
No 393
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=3.9e-08 Score=98.99 Aligned_cols=150 Identities=17% Similarity=0.251 Sum_probs=90.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..+.++|+.|.|||||||.|++.++.+...-+.+.+.. .....+......+++. |+
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~-------~~t~~i~~~~~~iee~----g~------------- 77 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERI-------KETVEIESTKVEIEEN----GV------------- 77 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCc-------cccceeeeeeeeecCC----Ce-------------
Confidence 46999999999999999999998751110000000000 0000011111111111 11
Q ss_pred hcccccccccceEEcCCCCCChhhh-----hhhccc--ChHH-------HHHHHh--hcCCeEEEEecCCCCCCCHHHHH
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQ-----RTQRTY--DFTG-------VISWFA--AKCDLILLLFDPHKLDISDEFKR 343 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~-----~~~~~~--~~~~-------~~~~~~--~~aD~illv~d~~~~~~~~~~~~ 343 (547)
--.++++||||+.+.-.. .+.... +|.. +-+... .+.+++|+.+.+...++.+-+.+
T Consensus 78 -------~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~ 150 (366)
T KOG2655|consen 78 -------KLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE 150 (366)
T ss_pred -------EEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH
Confidence 026899999999874100 000000 0000 111112 37899999999887678899999
Q ss_pred HHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhh
Q 008954 344 VIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSL 381 (547)
Q Consensus 344 ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l 381 (547)
.++.+.. ...+|-|+-|+|.+..+++......++..+
T Consensus 151 ~Mk~l~~-~vNiIPVI~KaD~lT~~El~~~K~~I~~~i 187 (366)
T KOG2655|consen 151 FMKKLSK-KVNLIPVIAKADTLTKDELNQFKKRIRQDI 187 (366)
T ss_pred HHHHHhc-cccccceeeccccCCHHHHHHHHHHHHHHH
Confidence 9999876 478999999999999998887776666543
No 394
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.76 E-value=1.6e-08 Score=92.95 Aligned_cols=124 Identities=19% Similarity=0.261 Sum_probs=75.6
Q ss_pred ccCCCCC--CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCcc
Q 008954 190 FLTNSDF--DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLT 267 (547)
Q Consensus 190 ~~~~~~~--~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~ 267 (547)
.+.+.++ .+|..++|+|++|+|||||++.|+|.. .|+.+.+.+ .+.. + ....
T Consensus 15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--------~~~~G~v~~--~g~~--------~--------~~~~ 68 (163)
T cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY--------KPDSGEILV--DGKE--------V--------SFAS 68 (163)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCeEEEE--CCEE--------C--------CcCC
Confidence 4555544 499999999999999999999999987 344444332 1110 0 0000
Q ss_pred ccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHH
Q 008954 268 TFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVI 345 (547)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll 345 (547)
.. . .....+.++.- +..++++++. ++++++.+++++|++ +.+.+........+++
T Consensus 69 ~~-~-------------~~~~~i~~~~q--LS~G~~qrl~-------laral~~~p~illlDEP~~~LD~~~~~~l~~~l 125 (163)
T cd03216 69 PR-D-------------ARRAGIAMVYQ--LSVGERQMVE-------IARALARNARLLILDEPTAALTPAEVERLFKVI 125 (163)
T ss_pred HH-H-------------HHhcCeEEEEe--cCHHHHHHHH-------HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 00 0 00012222211 4445666655 899999999999999 5555544445666777
Q ss_pred HHHhCCCCeEEEEeccC
Q 008954 346 ASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 346 ~~l~~~~~~iivVlNK~ 362 (547)
+.+.+.+..++++-+..
T Consensus 126 ~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 126 RRLRAQGVAVIFISHRL 142 (163)
T ss_pred HHHHHCCCEEEEEeCCH
Confidence 77765566777765543
No 395
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=1.8e-08 Score=99.50 Aligned_cols=160 Identities=18% Similarity=0.260 Sum_probs=91.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc--------cccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE--------RTIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~--------~~~~g~~~~~~~ 259 (547)
.+++.++. .|.+++|+|++|+|||||+++|+|.. .+.+..|+++.+.+ ++... ....+...+.+.
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~i~~--~g~~i~~~~~~~~~~~~~i~~v~q~ 96 (254)
T PRK14273 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN---DLVEGIKIEGNVIY--EGKNIYSNNFDILELRRKIGMVFQT 96 (254)
T ss_pred eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc---cCCcCCCCceEEEE--CCEecccccccHHHHhhceEEEeec
Confidence 55666555 99999999999999999999999987 33222234555443 22110 012234455555
Q ss_pred CCCCCCccccccchhhh-h-------hhhcccccccccceE-------EcC-CCCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 260 DLPFSGLTTFGGAFLSK-F-------ECSQMSHPLLDQVTF-------VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~-~-------~~~~~~~~ll~~l~l-------vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
...+. .+..++..... . .........++.+.+ .|+ ++-+|+ ++|++. ++++++.+
T Consensus 97 ~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~-------laral~~~ 168 (254)
T PRK14273 97 PNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC-------IARTLAIE 168 (254)
T ss_pred ccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH-------HHHHHHcC
Confidence 44442 44444432111 0 001111222222222 243 334444 566554 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++++|++ +.+.+........+++..++. +..++++-+..+
T Consensus 169 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~ 210 (254)
T PRK14273 169 PNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ 210 (254)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 9999999 555554445566777777754 566777666543
No 396
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.76 E-value=1.6e-08 Score=99.80 Aligned_cols=156 Identities=22% Similarity=0.284 Sum_probs=88.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-------------------c
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-------------------R 248 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-------------------~ 248 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. . |+++.+.+ ++... .
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~-----~~~G~i~~--~g~~i~~~~~~~~~~~~~~~~~~~~ 84 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE---P-----IDEGQIQV--EGEQLYHMPGRNGPLVPADEKHLRQ 84 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---C-----CCceEEEE--CCEEccccccccccccccchhHHHH
Confidence 55565554 89999999999999999999999987 2 33333322 11110 0
Q ss_pred ccCCceeeecCCCCCCCccccccchhhhh--------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHH
Q 008954 249 TIPGNTIAVHADLPFSGLTTFGGAFLSKF--------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGV 315 (547)
Q Consensus 249 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~ 315 (547)
...+...+++....+...+..++...... .......++++.+.+ .| .|.-.|+ +++++. +
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~-------l 157 (252)
T TIGR03005 85 MRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVA-------I 157 (252)
T ss_pred HhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHH-------H
Confidence 01234445555444444555444432110 001112233333333 22 2344444 555544 8
Q ss_pred HHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 316 ISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 316 ~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
+++++.+++++|++ +.+.+......+.+++..+.+ .+..++++-+..
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 158 ARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 99999999999999 445443334555667776654 366777776643
No 397
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.75 E-value=2.8e-08 Score=88.71 Aligned_cols=157 Identities=20% Similarity=0.284 Sum_probs=99.6
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeC---CCc---cccC--Cceeeec
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSG---PDE---RTIP--GNTIAVH 258 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~---~~~---~~~~--g~~~~~~ 258 (547)
+.+++.++. .|..|+|||++|+|||||+-.|.|.+ .|+.+.+.+..+. -++ .... ....+++
T Consensus 24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd--------~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQ 95 (228)
T COG4181 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD--------DPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQ 95 (228)
T ss_pred eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC--------CCCCceEEEcCcchhhcCHHHHHHhhccceeEEEE
Confidence 355565544 89999999999999999999999999 3444555543321 111 1122 2345788
Q ss_pred CCCCCCCccccccchhhh-hh------hhcccccccccceEE----cCCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 259 ADLPFSGLTTFGGAFLSK-FE------CSQMSHPLLDQVTFV----DTPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~-~~------~~~~~~~ll~~l~lv----DTPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
....++.++..+|..+.- +. .......+|..+.+- -.|+.+++ ++||+. ++++++.++|++
T Consensus 96 SF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVA-------iARAfa~~P~vL 168 (228)
T COG4181 96 SFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVA-------LARAFAGRPDVL 168 (228)
T ss_pred eeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHH-------HHHHhcCCCCEE
Confidence 888888888888864321 11 111223444555443 37998887 666654 899999999999
Q ss_pred EEEecCCCC--CCCHHHHHHHHHH-hCCCCeEEEEec
Q 008954 327 LLLFDPHKL--DISDEFKRVIASL-RGNDDKIRVVLN 360 (547)
Q Consensus 327 llv~d~~~~--~~~~~~~~ll~~l-~~~~~~iivVlN 360 (547)
+-+-..-++ ...+.+.+++-.+ ++.+..+++|.+
T Consensus 169 fADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTH 205 (228)
T COG4181 169 FADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205 (228)
T ss_pred eccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeC
Confidence 888433322 2234455555444 356777777754
No 398
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.75 E-value=3.7e-08 Score=91.37 Aligned_cols=108 Identities=20% Similarity=0.138 Sum_probs=69.2
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchh
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFL 274 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 274 (547)
.+.+|..++|+|++|+|||||+|.|+|.. .|+.+.+.+ .+ ..+. +
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g--------~~i~---------~-------- 65 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL--------IPNGDNDEW--DG--------ITPV---------Y-------- 65 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC--------CCCCcEEEE--CC--------EEEE---------E--------
Confidence 55689999999999999999999999987 344454433 11 0000 0
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCC
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGND 352 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~ 352 (547)
+-..+.+..++++++. ++++++.++++++++ +.+.+........+++..+...+
T Consensus 66 -----------------~~q~~~LSgGq~qrv~-------laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~ 121 (177)
T cd03222 66 -----------------KPQYIDLSGGELQRVA-------IAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEG 121 (177)
T ss_pred -----------------EcccCCCCHHHHHHHH-------HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcC
Confidence 0001114445666655 899999999999999 44444333445566676665544
Q ss_pred -CeEEEEecc
Q 008954 353 -DKIRVVLNK 361 (547)
Q Consensus 353 -~~iivVlNK 361 (547)
..++++-+.
T Consensus 122 ~~tiiivsH~ 131 (177)
T cd03222 122 KKTALVVEHD 131 (177)
T ss_pred CCEEEEEECC
Confidence 666666554
No 399
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.75 E-value=2.1e-08 Score=103.92 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=91.8
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----------cccCCceeeecCCCCCC
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----------RTIPGNTIAVHADLPFS 264 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----------~~~~g~~~~~~~~~~~~ 264 (547)
.+..|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++... ....+..++++....|.
T Consensus 19 ~i~~Gei~~l~G~nGsGKSTLl~~iaGl~--------~p~~G~I~~--~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~ 88 (354)
T TIGR02142 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLT--------RPDEGEIVL--NGRTLFDSRKGIFLPPEKRRIGYVFQEARLFP 88 (354)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEECccCccccccchhhCCeEEEecCCccCC
Confidence 34588999999999999999999999987 233444332 22110 01223455666655666
Q ss_pred Cccccccchhhhh-----hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecC
Q 008954 265 GLTTFGGAFLSKF-----ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDP 332 (547)
Q Consensus 265 ~l~~~~~~~~~~~-----~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~ 332 (547)
.++..++...... .......++++.+.+ .| .|+-+|+ ++|++. ++++++.+++++|++ +.+
T Consensus 89 ~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRva-------lAraL~~~p~lllLDEPts~ 161 (354)
T TIGR02142 89 HLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVA-------IGRALLSSPRLLLMDEPLAA 161 (354)
T ss_pred CCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEcCCCcC
Confidence 6666665422110 001112333444433 23 3444554 666654 899999999999999 555
Q ss_pred CCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 333 HKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 333 ~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
.+......+.++++.+... +.+++++-+..+
T Consensus 162 LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 5544455667777777554 677777766443
No 400
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=1.7e-08 Score=103.28 Aligned_cols=162 Identities=15% Similarity=0.198 Sum_probs=95.9
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc--------c--CCceee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT--------I--PGNTIA 256 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~--------~--~g~~~~ 256 (547)
.++++.+|+ .|.+++|+|++|+|||||+++|+|... + ...++.+++.+ .|.+... . ....++
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~---~-~~~~~~G~i~~--~G~~i~~~~~~~~~~~r~~~i~~v 94 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID---Y-PGRVMAEKLEF--NGQDLQRISEKERRNLVGAEVAMI 94 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---C-CCCCcceEEEE--CCEECCcCCHHHHHHHhCCCEEEE
Confidence 367777666 899999999999999999999999762 1 11234444333 3322111 1 134556
Q ss_pred ecCCC-CCCCccccccchhh---------hhhhhcccccccccceEEc-------CCCCCCh-hhhhhhcccChHHHHHH
Q 008954 257 VHADL-PFSGLTTFGGAFLS---------KFECSQMSHPLLDQVTFVD-------TPGVLSG-EKQRTQRTYDFTGVISW 318 (547)
Q Consensus 257 ~~~~~-~~~~l~~~~~~~~~---------~~~~~~~~~~ll~~l~lvD-------TPG~~~~-~~~~~~~~~~~~~~~~~ 318 (547)
++... .+....+.+..+.. +.+.......+++.+.+-| .|+-+|+ ++|++. ++++
T Consensus 95 ~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~-------iArA 167 (326)
T PRK11022 95 FQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM-------IAMA 167 (326)
T ss_pred ecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH-------HHHH
Confidence 66542 12221122211110 0111122334555555532 4555665 566655 8999
Q ss_pred HhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 319 FAAKCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 319 ~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
++.+++++|++ +.+.+.....++.+++..+.+ .+..+++|-+..+
T Consensus 168 L~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 168 IACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999 555554455667788887765 4777888776554
No 401
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.75 E-value=2e-08 Score=96.42 Aligned_cols=152 Identities=18% Similarity=0.257 Sum_probs=88.3
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCCCCccccc
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPFSGLTTFG 270 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~~~l~~~~ 270 (547)
.+..|..++|+|++|+|||||++.|+|.. .|..+.+.+ ++.... .......+++....+.+++..+
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFI--------EPASGSIKV--NDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCC--------CCCCcEEEE--CCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 44589999999999999999999999987 233444332 221110 1122344555555555555555
Q ss_pred cchhhh---h----hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCC
Q 008954 271 GAFLSK---F----ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLD 336 (547)
Q Consensus 271 ~~~~~~---~----~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~ 336 (547)
+..... . .......++++.+.+ .+. |.-.|+ +++++. ++++++.+++++|++ +.+.+..
T Consensus 90 n~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 90 NIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVA-------LARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHH-------HHHHHhcCCCEEEEcCCCccCCHH
Confidence 542110 0 001112233334333 232 344444 556554 899999999999999 4455444
Q ss_pred CCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 337 ISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 337 ~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
......+++..+.+. +..++++-+..+
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 445566777776543 667777766543
No 402
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.74 E-value=2.2e-08 Score=95.79 Aligned_cols=151 Identities=18% Similarity=0.157 Sum_probs=83.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc------cccCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE------RTIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~------~~~~g~~~~~~~~~ 261 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+++.+.+ ++... ....+...+++...
T Consensus 23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~~i~~v~q~~~ 92 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL--------EAEEGKIEI--DGIDISTIPLEDLRSSLTIIPQDPT 92 (207)
T ss_pred cccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc--------CCCCCeEEE--CCEEhHHCCHHHHHhhEEEEecCCc
Confidence 55565554 89999999999999999999999987 233444332 11110 01123444555443
Q ss_pred CCCCccccccchhhhhhhhcccccccccceEEc-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCC
Q 008954 262 PFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDI 337 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~ 337 (547)
.+.+ +..++..... . .....+...+. ++ -+...++ +++++. ++++++.+++++|++ +.+.+...
T Consensus 93 ~~~~-tv~~~l~~~~--~-~~~~~~~~~l~-~~~~~~~LS~G~~qrv~-------laral~~~p~llllDEP~~~LD~~~ 160 (207)
T cd03369 93 LFSG-TIRSNLDPFD--E-YSDEEIYGALR-VSEGGLNLSQGQRQLLC-------LARALLKRPRVLVLDEATASIDYAT 160 (207)
T ss_pred ccCc-cHHHHhcccC--C-CCHHHHHHHhh-ccCCCCcCCHHHHHHHH-------HHHHHhhCCCEEEEeCCcccCCHHH
Confidence 3332 3333321100 0 00000111122 23 3444554 555544 899999999999999 55555444
Q ss_pred CHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 338 SDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 338 ~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
.+...+++..+.+ +..++++-+..+
T Consensus 161 ~~~l~~~l~~~~~-~~tiii~th~~~ 185 (207)
T cd03369 161 DALIQKTIREEFT-NSTILTIAHRLR 185 (207)
T ss_pred HHHHHHHHHHhcC-CCEEEEEeCCHH
Confidence 4555666666643 667777766544
No 403
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=1.3e-08 Score=101.19 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=88.6
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc------cccCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE------RTIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~------~~~~g~~~~~~~~~ 261 (547)
.+.+.+|. .|..++|+|++|+|||||++.|+|.. . |+.+.+.+ ++... ....+...+++...
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~-----~~~G~i~~--~g~~~~~~~~~~~~~~i~~v~q~~~ 95 (265)
T PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ---P-----PSEGEILL--DAQPLESWSSKAFARKVAYLPQQLP 95 (265)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC---C-----CCCCEEEE--CCEehhhCCHHHHhhheEEeccCCC
Confidence 56666655 89999999999999999999999976 2 33333322 12110 00122334444433
Q ss_pred CCCCccccccchhhhh-----------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 262 PFSGLTTFGGAFLSKF-----------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~-----------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
.+.+++..++...... ........++..+.+ .+ .|+-.|+ +++++. ++++++.++++
T Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------laral~~~p~l 168 (265)
T PRK10575 96 AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAW-------IAMLVAQDSRC 168 (265)
T ss_pred CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHH-------HHHHHhcCCCE
Confidence 3333343333211100 000111222333332 23 3555664 556554 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
+|++ +.+.+......+.+++..+... +..++++-+..+
T Consensus 169 llLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999 5555544445666777777543 677777766544
No 404
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.74 E-value=4.1e-08 Score=94.30 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=99.4
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEE----EEeCCCccc----cCCceeeecCCCCCCCccccc
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVV----VMSGPDERT----IPGNTIAVHADLPFSGLTTFG 270 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~----i~~~~~~~~----~~g~~~~~~~~~~~~~l~~~~ 270 (547)
.-+.|+.|++|+|||||||++.|... |..+++.+ +.+...... ...+..++|....|+.++..|
T Consensus 24 ~GvTAlFG~SGsGKTslin~IaGL~r--------PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 24 RGITALFGPSGSGKTSLINMIAGLTR--------PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred CceEEEecCCCCChhhHHHHHhccCC--------ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 36899999999999999999999983 44454443 111111111 234566889999999999999
Q ss_pred cchhhhhhhhc--c--cccccccceEEc-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHH
Q 008954 271 GAFLSKFECSQ--M--SHPLLDQVTFVD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFK 342 (547)
Q Consensus 271 ~~~~~~~~~~~--~--~~~ll~~l~lvD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~ 342 (547)
|.-........ + .-.+|.-=-+.| .|+-+|| ++|++. +.++++..+++++++ +.+.+.....|..
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVA-------IGRALLt~P~LLLmDEPLaSLD~~RK~Eil 168 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVA-------IGRALLTAPELLLMDEPLASLDLPRKREIL 168 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHH-------HHHHHhcCCCeeeecCchhhcccchhhHHH
Confidence 87432211100 0 000110001222 5777776 788765 889999999999999 6666655566777
Q ss_pred HHHHHHhC-CCCeEEEEeccCCC
Q 008954 343 RVIASLRG-NDDKIRVVLNKADQ 364 (547)
Q Consensus 343 ~ll~~l~~-~~~~iivVlNK~D~ 364 (547)
-+++.+.+ .+.|++.|-+-+|.
T Consensus 169 pylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 169 PYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred HHHHHHHHhcCCCEEEEecCHHH
Confidence 78887764 48899999776553
No 405
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=1.5e-08 Score=101.94 Aligned_cols=158 Identities=21% Similarity=0.236 Sum_probs=92.5
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc--------ccCCceeeec
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER--------TIPGNTIAVH 258 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~--------~~~g~~~~~~ 258 (547)
.++.+.++. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ......++++
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~~ig~v~q 90 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL--------KPTSGKIII--DGVDITDKKVKLSDIRKKVGLVFQ 90 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--------CCCccEEEE--CCEECCCcCccHHHHhhceEEEec
Confidence 356666655 89999999999999999999999987 344444333 221110 0122344455
Q ss_pred CC-CCCCCccccccchhh-------hhhhhcccccccccceE-----EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 259 AD-LPFSGLTTFGGAFLS-------KFECSQMSHPLLDQVTF-----VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 259 ~~-~~~~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~l-----vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
.. ..+...+..++.... ..+.......+++.+.+ .|+ |+.+|+ ++|++. ++++++.++
T Consensus 91 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~-------iAraL~~~P 163 (287)
T PRK13637 91 YPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVA-------IAGVVAMEP 163 (287)
T ss_pred CchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHH-------HHHHHHcCC
Confidence 42 112122333333211 01111122334444333 444 344554 566654 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
+++|++ +.+.+......+.+++..+... +..++++.+..+
T Consensus 164 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 206 (287)
T PRK13637 164 KILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME 206 (287)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999 5555555556777888877654 677777766543
No 406
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.74 E-value=1.8e-08 Score=98.90 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=89.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. . ..|+.+.+.+ ++.... ...+...+++..
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~---~~~~~G~i~~--~g~~~~~~~~~~~~~~~i~~v~q~~ 86 (243)
T TIGR01978 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHP---S---YEVTSGTILF--KGQDLLELEPDERARAGLFLAFQYP 86 (243)
T ss_pred EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCC---C---CCCCcceEEE--CCEecCCCCHHHhhccceEeeeccc
Confidence 55665555 89999999999999999999999974 0 0233444332 221110 011233344544
Q ss_pred CCCCCccccccchhh-hh-------------hhhcccccccccceE----EcC-CCC-CC-hhhhhhhcccChHHHHHHH
Q 008954 261 LPFSGLTTFGGAFLS-KF-------------ECSQMSHPLLDQVTF----VDT-PGV-LS-GEKQRTQRTYDFTGVISWF 319 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~-~~-------------~~~~~~~~ll~~l~l----vDT-PG~-~~-~~~~~~~~~~~~~~~~~~~ 319 (547)
..+.+.+...+.... .. ........++..+.+ .|. ++. .| |++|++. +++++
T Consensus 87 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~-------la~al 159 (243)
T TIGR01978 87 EEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNE-------ILQMA 159 (243)
T ss_pred cccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHH-------HHHHH
Confidence 444444333322110 00 000111222333322 343 332 44 4666654 89999
Q ss_pred hhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 320 AAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 320 ~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+.+++++|++ +.+.+......+.+++..+.+.+..++++-+..+
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~ 205 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH
Confidence 9999999999 5555544455667777777665677777766543
No 407
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.74 E-value=8.6e-09 Score=112.19 Aligned_cols=157 Identities=18% Similarity=0.228 Sum_probs=94.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc-------cCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT-------IPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~-------~~g~~~~~~~~ 260 (547)
.+.+.+|. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... ..+...+++..
T Consensus 26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~i~~v~q~~ 95 (510)
T PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV--------PPDSGTLEI--GGNPCARLTPAKAHQLGIYLVPQEP 95 (510)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEECCCCCHHHHHhCCEEEEeccC
Confidence 55666555 89999999999999999999999987 234444332 2211100 12344556655
Q ss_pred CCCCCccccccchhhh---hhhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--e
Q 008954 261 LPFSGLTTFGGAFLSK---FECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--F 330 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~---~~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~ 330 (547)
..+..++..++..... .........++..+.+ .| .++-+|+ ++|++. ++++++.+++++|++ +
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 96 LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVE-------ILRGLMRDSRILILDEPT 168 (510)
T ss_pred ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEECCC
Confidence 5555555555432110 0001111223333333 23 3455555 666654 899999999999999 5
Q ss_pred cCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 331 DPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 331 d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
.+.++.....+.++++.+.+.+..++++-+..+
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 201 (510)
T PRK15439 169 ASLTPAETERLFSRIRELLAQGVGIVFISHKLP 201 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 555544556677777777666777777766544
No 408
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.74 E-value=9.4e-09 Score=99.99 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=90.5
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHA 259 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~ 259 (547)
..+.+.++. +|..++|+|++|+|||||++.|+|.. .|+++.+.+ .+.... ...+....++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~i~~~~q~ 83 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL--------PVKSGSIRL--DGEDITKLPPHERARAGIAYVPQG 83 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCCEEEE--CCEECCCCCHHHHHHhCeEEeccC
Confidence 356666655 89999999999999999999999987 344444433 221100 01234445555
Q ss_pred CCCCCCccccccchhhh-h---hhhcccccccccce----EEcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE
Q 008954 260 DLPFSGLTTFGGAFLSK-F---ECSQMSHPLLDQVT----FVDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL 329 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~-~---~~~~~~~~ll~~l~----lvDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv 329 (547)
...+..++..++..... . ........++..+. ..|. ++-.|+ +++++. ++++++.+++++|++
T Consensus 84 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~illlD 156 (230)
T TIGR03410 84 REIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLA-------IARALVTRPKLLLLD 156 (230)
T ss_pred CcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEec
Confidence 44444444444432110 0 00011122222222 1232 233343 555544 899999999999999
Q ss_pred --ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 330 --FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 330 --~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
+.+.+......+.+++..+.+. +..++++.+..+
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 193 (230)
T TIGR03410 157 EPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193 (230)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 5555544455667777776653 677777766543
No 409
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=1.4e-08 Score=101.60 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=89.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc------ccCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER------TIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~------~~~g~~~~~~~~~ 261 (547)
.+.+.+|+ .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ .+.... .......+++...
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~i~~v~q~~~ 88 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL--------KPTSGSVLI--RGEPITKENIREVRKFVGLVFQNPD 88 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCceEEEE--CCEECCcCCHHHHHhheEEEecCcc
Confidence 55665555 89999999999999999999999987 344444433 221110 0112333444321
Q ss_pred -CCCCccccccchhhhh----h---hhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEE
Q 008954 262 -PFSGLTTFGGAFLSKF----E---CSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILL 328 (547)
Q Consensus 262 -~~~~l~~~~~~~~~~~----~---~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ill 328 (547)
.+...+..++...... . .......++..+.+ .+ .|+-.|+ +++++. ++++++.+++++|+
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~-------laraL~~~p~llil 161 (277)
T PRK13652 89 DQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVA-------IAGVIAMEPQVLVL 161 (277)
T ss_pred cccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHH-------HHHHHHcCCCEEEE
Confidence 1212233333221110 0 00111223333333 22 4555554 555544 89999999999999
Q ss_pred E--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 329 L--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 329 v--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
+ +.+.+......+.++++.+... +..++++-+..+
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 199 (277)
T PRK13652 162 DEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD 199 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 9 5555545556677788777654 677777766644
No 410
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.73 E-value=1.7e-08 Score=98.00 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=89.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc--------cCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT--------IPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~--------~~g~~~~~~~ 259 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. ......|..+.+.+ .+..... ..+...+++.
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~~~~~~G~i~~--~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN---DLIPGAPDEGEVLL--DGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc---ccccCCCCCeEEEE--CCEEhhhcchHHHHHHhhEEEEecC
Confidence 55565554 89999999999999999999999986 11111244444433 2211100 1223444554
Q ss_pred CCCCCCccccccchhh-hhh-------hhcccccccccceE---EcC---CCCCCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 260 DLPFSGLTTFGGAFLS-KFE-------CSQMSHPLLDQVTF---VDT---PGVLSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~-~~~-------~~~~~~~ll~~l~l---vDT---PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
...+ ..+..++.... ... .......+++.+.+ .+. |+-.|+ ++|++. ++++++.+++
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~-------la~al~~~p~ 161 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLC-------LARALANEPE 161 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHH-------HHHHHhcCCC
Confidence 4434 44444443211 000 01112233333333 232 355665 556554 8999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
++|++ +.+.+........+++..+.+. ..++++-+.
T Consensus 162 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~ 199 (227)
T cd03260 162 VLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHN 199 (227)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEecc
Confidence 99999 5555544455666777777654 566666553
No 411
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=9e-09 Score=100.63 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=87.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|.. .|+++.+.+ ++.... ...+.....+..
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~i~~~~q~~ 89 (237)
T PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP--------RATSGRIVF--DGKDITDWQTAKIMREAVAIVPEGR 89 (237)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--------CCCCceEEE--CCEecCCCCHHHHHHhCEEEeccCc
Confidence 45555544 89999999999999999999999987 234444332 221111 112334445554
Q ss_pred CCCCCccccccchhhhh-----hhhcccccccccc-eE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE
Q 008954 261 LPFSGLTTFGGAFLSKF-----ECSQMSHPLLDQV-TF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL 329 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~-----~~~~~~~~ll~~l-~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv 329 (547)
..+.+++...+...... ........++..+ .+ .+ .++-.|+ +++++. ++++++.+++++|++
T Consensus 90 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~illlD 162 (237)
T PRK11614 90 RVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLA-------IGRALMSQPRLLLLD 162 (237)
T ss_pred ccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHH-------HHHHHHhCCCEEEEc
Confidence 44555554444321110 0000111122222 11 12 3344443 555544 899999999999999
Q ss_pred --ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 330 --FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 330 --~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+.+.+........+++..+.+.+..++++-+.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (237)
T PRK11614 163 EPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN 196 (237)
T ss_pred CccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 55555444556667777776656676666553
No 412
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.73 E-value=3e-08 Score=98.80 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=89.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---------ccCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---------TIPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---------~~~g~~~~~~ 258 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+++.+.+ ++.... .......+++
T Consensus 22 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~i~~~~~~~~~~~~~~i~~v~q 91 (269)
T PRK11831 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI--------APDHGEILF--DGENIPAMSRSRLYTVRKRMSMLFQ 91 (269)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCEEccccChhhHHHHhhcEEEEec
Confidence 45555554 89999999999999999999999987 234444333 221100 0122344555
Q ss_pred CCCCCCCccccccchhhhhh-----h---hcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 259 ADLPFSGLTTFGGAFLSKFE-----C---SQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~~~-----~---~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
....+.+++..++....... . ......++..+.+- | .|+-+|+ ++|++. ++++++.++++
T Consensus 92 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~-------laral~~~p~l 164 (269)
T PRK11831 92 SGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAA-------LARAIALEPDL 164 (269)
T ss_pred ccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 54455555555554221000 0 00111223333332 2 3455554 555544 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEecc
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNK 361 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK 361 (547)
+|++ +.+.+......+.+++..+.+. +..++++-+.
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 203 (269)
T PRK11831 165 IMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 9999 5555544455666777777544 6677777664
No 413
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.73 E-value=2.1e-08 Score=99.23 Aligned_cols=157 Identities=19% Similarity=0.222 Sum_probs=88.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~~ 261 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|.. .|+.+++.+ ++..... ..+.....+...
T Consensus 16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~i~~~~q~~~ 85 (256)
T TIGR03873 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL--------RPDAGTVDL--AGVDLHGLSRRARARRVALVEQDSD 85 (256)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--------CCCCCEEEE--CCEEcccCCHHHHhhheEEecccCc
Confidence 55665555 89999999999999999999999977 234444333 2211100 112333444332
Q ss_pred CCCCccccccchhhhh-----------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 262 PFSGLTTFGGAFLSKF-----------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~-----------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
.+...+..++...... ........++..+.+ .| .++.+|+ +++++. ++++++.++++
T Consensus 86 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~l 158 (256)
T TIGR03873 86 TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVH-------VARALAQEPKL 158 (256)
T ss_pred cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH-------HHHHHhcCCCE
Confidence 2223333333211100 000111223333322 33 2344554 555544 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+|++ +.+.+........+++..+.+.+..++++-+..+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN 198 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999 5555544455667777777665677777766543
No 414
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=2.9e-08 Score=98.92 Aligned_cols=157 Identities=17% Similarity=0.199 Sum_probs=86.4
Q ss_pred ccCCCCC--CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCCC
Q 008954 190 FLTNSDF--DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~--~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~~ 261 (547)
.+.+.++ .+|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... ..+...+++...
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~~i~~v~q~~~ 93 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE--------KVKSGEIFY--NNQAITDDNFEKLRKHIGIVFQNPD 93 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCceEEEE--CCEECCcCCHHHHHhheeEEEeChH
Confidence 4555544 489999999999999999999999987 233444332 2211100 123344444421
Q ss_pred -CCCCccccccchhh-------hhhhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEE
Q 008954 262 -PFSGLTTFGGAFLS-------KFECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILL 328 (547)
Q Consensus 262 -~~~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ill 328 (547)
.+.+.+...+.... ..........+++.+.+ .|. |+-.|+ +++++. ++++++.+++++|+
T Consensus 94 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~~~p~lllL 166 (269)
T PRK13648 94 NQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVA-------IAGVLALNPSVIIL 166 (269)
T ss_pred HhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHH-------HHHHHHcCCCEEEE
Confidence 23332222222110 00001111222333322 332 344444 555544 89999999999999
Q ss_pred E--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 329 L--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 329 v--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
+ +.+.+........+++..+.+. +..++++-+..+
T Consensus 167 DEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 167 DEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 9 5555544445566777776543 667777766544
No 415
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=1.6e-08 Score=99.95 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=87.3
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-----c-cCCceeeecCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-----T-IPGNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-----~-~~g~~~~~~~~ 260 (547)
..+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... . ......+++..
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~~i~~~~q~~ 85 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL--------TPQSGTVFL--GDKPISMLSSRQLARRLALLPQHH 85 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc--------CCCCcEEEE--CCEEhHHCCHHHHhhheEEecccC
Confidence 356666655 89999999999999999999999986 233343332 221100 0 11233344443
Q ss_pred CCCCCccccccchhh-----------hhhhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 261 LPFSGLTTFGGAFLS-----------KFECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~-----------~~~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
..+.+++...+.... ..........++..+.+ .|+ |+-.|+ +++++. ++++++.+++
T Consensus 86 ~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~ 158 (255)
T PRK11231 86 LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAF-------LAMVLAQDTP 158 (255)
T ss_pred CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHH-------HHHHHhcCCC
Confidence 333333333332110 00000111122222222 233 344554 555544 8999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
++|++ +.+.+........+++..+...+..++++-+..
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL 198 (255)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 99999 555554445566677777665566777776643
No 416
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.73 E-value=1.4e-08 Score=110.53 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=93.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.+|. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+.+.+++..
T Consensus 20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~--------~p~~G~i~~--~g~~i~~~~~~~~~~~~i~~v~q~~ 89 (510)
T PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH--------EPTKGTITI--NNINYNKLDHKLAAQLGIGIIYQEL 89 (510)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc--------CCCccEEEE--CCEECCCCCHHHHHHCCeEEEeecc
Confidence 55666655 89999999999999999999999987 234444333 221110 012344455554
Q ss_pred CCCCCccccccchhhhh--------------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhh
Q 008954 261 LPFSGLTTFGGAFLSKF--------------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAA 321 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~--------------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (547)
..+..++..++...... ........++..+.+ .|. |+-+|+ ++|++. ++++++.
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~-------ia~al~~ 162 (510)
T PRK09700 90 SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLE-------IAKTLML 162 (510)
T ss_pred cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH-------HHHHHhc
Confidence 44444444444321100 001112233333333 232 455554 666654 8999999
Q ss_pred cCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 322 KCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 322 ~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+++++|++ +.+.++.......+++..+...+..++++-+..+
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~ 206 (510)
T PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA 206 (510)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 99999999 5555544456667778777666677777766544
No 417
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=4.7e-08 Score=95.26 Aligned_cols=156 Identities=21% Similarity=0.290 Sum_probs=90.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~ 263 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|.. .|..+.+.+ .+.... ...+...+.+....+
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~--------~~~~G~i~~--~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE--------TPTSGEILL--DGKDITNLPPHKRPVNTVFQNYALF 84 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCceEEEE--CCEEcCcCChhhcceEEEecccccC
Confidence 55555544 89999999999999999999999987 234444333 221110 112344455655555
Q ss_pred CCccccccchhhhh-------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLSKF-------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~~~-------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
.+.+..++...... ........+++.+.+ .+ .|.-.|+ +++++. ++++++.+++++|++
T Consensus 85 ~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~-------laral~~~p~llllDEP 157 (232)
T cd03300 85 PHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVA-------IARALVNEPKVLLLDEP 157 (232)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEcCC
Confidence 55555444321100 000111222233332 22 2333443 555544 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccC
Q 008954 330 FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKA 362 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~ 362 (547)
+.+.+......+.+++..+.+. +..++++.+..
T Consensus 158 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 158 LGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ 191 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5555544456667777777653 67777776653
No 418
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=3.2e-08 Score=96.37 Aligned_cols=152 Identities=18% Similarity=0.278 Sum_probs=86.5
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCCCCccccc
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPFSGLTTFG 270 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~~~l~~~~ 270 (547)
.+..|..++|+|++|+|||||++.|+|.. .|..+.+.+ ++.... ...+...+++....+.+++..+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 90 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFL--------TPASGSLTL--NGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQ 90 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCeecCcCChhhccEEEEecccccccCCcHHH
Confidence 44589999999999999999999999987 233343332 221110 1123344455444444444444
Q ss_pred cchhhhh-------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCC
Q 008954 271 GAFLSKF-------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLD 336 (547)
Q Consensus 271 ~~~~~~~-------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~ 336 (547)
+...... ........+++.+.+ +| .|+-+|+ +++++. ++++++.+++++|++ +.+.+..
T Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~lllLDEP~~gLD~~ 163 (232)
T PRK10771 91 NIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVA-------LARCLVREQPILLLDEPFSALDPA 163 (232)
T ss_pred HHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHH-------HHHHHhcCCCEEEEeCCcccCCHH
Confidence 4321100 001112223333333 23 3444554 556554 899999999999999 5555544
Q ss_pred CCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 337 ISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 337 ~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
......+++..+.. .+..++++-+..+
T Consensus 164 ~~~~~~~~l~~~~~~~~~tiii~sH~~~ 191 (232)
T PRK10771 164 LRQEMLTLVSQVCQERQLTLLMVSHSLE 191 (232)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 44556677776654 3667777766544
No 419
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=2e-08 Score=101.12 Aligned_cols=156 Identities=18% Similarity=0.234 Sum_probs=91.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----------cccCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----------RTIPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----------~~~~g~~~~~ 257 (547)
++.+.++. +|.+|+|+|++|+|||||++.|+|.. .|+.+.+.+ ++... ........++
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~i~~~~~~~~~~~~~~~ig~v~ 90 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL--------QPTEGKVTV--GDIVVSSTSKQKEIKPVRKKVGVVF 90 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC--------CCCCcEEEE--CCEECccccccccHHHHHhhEEEEe
Confidence 56666655 89999999999999999999999987 344444433 22110 0012334455
Q ss_pred cCC--CCCCCccccccchhh-------hhhhhcccccccccceE----Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 258 HAD--LPFSGLTTFGGAFLS-------KFECSQMSHPLLDQVTF----VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 258 ~~~--~~~~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~l----vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
+.. ..+. .+..++.... ..+.......+++.+.+ .+ .|..+|+ +++++. ++++++.+
T Consensus 91 q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrva-------iA~aL~~~ 162 (288)
T PRK13643 91 QFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVA-------IAGILAME 162 (288)
T ss_pred cCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHH-------HHHHHHhC
Confidence 542 2222 2333332111 01111112233333222 23 3455554 556554 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++++|++ +.+.++.....+.+++..++..+..++++.+..+
T Consensus 163 p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~ 205 (288)
T PRK13643 163 PEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD 205 (288)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 9999999 5555544556667777777666778888877654
No 420
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=1.5e-08 Score=101.88 Aligned_cols=157 Identities=19% Similarity=0.237 Sum_probs=93.0
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----------ccCCceee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----------TIPGNTIA 256 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----------~~~g~~~~ 256 (547)
.++++.++. .|..++|+|++|+|||||++.|+|.. .|+++.+.+ ++.... ....+..+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~--------~p~~G~i~~--~g~~i~~~~~~~~~~~~~~~ig~v 90 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL--------KPTTGTVTV--DDITITHKTKDKYIRPVRKRIGMV 90 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCcEEEE--CCEECccccccchHHHHHhheEEE
Confidence 366776665 89999999999999999999999987 344454433 221110 11234445
Q ss_pred ecCC--CCCCCccccccchhh-------hhhhhcccccccccceE----EcC-CCCCCh-hhhhhhcccChHHHHHHHhh
Q 008954 257 VHAD--LPFSGLTTFGGAFLS-------KFECSQMSHPLLDQVTF----VDT-PGVLSG-EKQRTQRTYDFTGVISWFAA 321 (547)
Q Consensus 257 ~~~~--~~~~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~l----vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (547)
++.. ..+. .+..++.... ..+.......++..+.+ .|+ |.-+|+ +++++. ++++++.
T Consensus 91 ~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~-------laraL~~ 162 (286)
T PRK13646 91 FQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIA-------IVSILAM 162 (286)
T ss_pred ecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH-------HHHHHHh
Confidence 5542 1222 2333333211 01111222344444443 233 344444 555544 8999999
Q ss_pred cCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 322 KCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 322 ~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
+++++|++ +.+.++.....+.+++..+.. .+..++++.+..+
T Consensus 163 ~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~ 207 (286)
T PRK13646 163 NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207 (286)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 99999999 556655555667777877764 4778888877655
No 421
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.72 E-value=2.7e-08 Score=98.48 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=91.8
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-------------------c
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-------------------R 248 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-------------------~ 248 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+++.+.+ .+... .
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~~~~~~~~ 89 (257)
T PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--------KPSEGSIVV--NGQTINLVRDKDGQLKVADKNQLRL 89 (257)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCeEEEE--CCEEcccccccccccccccchHHHH
Confidence 45555554 89999999999999999999999987 233343332 11110 0
Q ss_pred ccCCceeeecCCCCCCCccccccchhhh--------hhhhcccccccccceEE----c-CCCCCCh-hhhhhhcccChHH
Q 008954 249 TIPGNTIAVHADLPFSGLTTFGGAFLSK--------FECSQMSHPLLDQVTFV----D-TPGVLSG-EKQRTQRTYDFTG 314 (547)
Q Consensus 249 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~ll~~l~lv----D-TPG~~~~-~~~~~~~~~~~~~ 314 (547)
...+...+.+....+..++..++..... ........++++.+.+- + .++..|+ +++++.
T Consensus 90 ~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~------- 162 (257)
T PRK10619 90 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS------- 162 (257)
T ss_pred HhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH-------
Confidence 0123444555555555555555542110 00111122333343331 3 2344444 555544
Q ss_pred HHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 315 VISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 315 ~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
++++++.+++++|++ +.+.+........+++..+.+.+..+++|-+..
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~ 212 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 899999999999999 555554445566677777766677777776643
No 422
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.72 E-value=2.1e-08 Score=95.37 Aligned_cols=137 Identities=20% Similarity=0.275 Sum_probs=80.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc-------cCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT-------IPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~-------~~g~~~~~~~~ 260 (547)
.+.+.+++ .|..++|+|++|+|||||++.|+|... ..|+.+++.+ ++..... ..+...+++..
T Consensus 15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~------~~p~~G~i~~--~g~~~~~~~~~~~~~~~i~~v~q~~ 86 (200)
T cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK------YEVTEGEILF--KGEDITDLPPEERARLGIFLAFQYP 86 (200)
T ss_pred eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc------CCCCccEEEE--CCEECCcCCHHHHhhCcEEEeecCh
Confidence 56665555 899999999999999999999999741 1244454443 2211100 11122333332
Q ss_pred CCCCCccccccchhhhhhhhcccccccccceEEcCC-CCCC-hhhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCC
Q 008954 261 LPFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTP-GVLS-GEKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLD 336 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTP-G~~~-~~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~ 336 (547)
..+.+..... +++.+ +-.| |+++++. ++++++.+++++|++ +.+.+..
T Consensus 87 ~~~~~~~~~~---------------------~l~~~~~~LS~G~~qrv~-------laral~~~p~illlDEPt~~LD~~ 138 (200)
T cd03217 87 PEIPGVKNAD---------------------FLRYVNEGFSGGEKKRNE-------ILQLLLLEPDLAILDEPDSGLDID 138 (200)
T ss_pred hhccCccHHH---------------------HHhhccccCCHHHHHHHH-------HHHHHhcCCCEEEEeCCCccCCHH
Confidence 2222221111 11222 3344 4566554 899999999999999 5555434
Q ss_pred CCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 337 ISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 337 ~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
....+.+++..+.+.+..++++-+..
T Consensus 139 ~~~~l~~~L~~~~~~~~tiii~sh~~ 164 (200)
T cd03217 139 ALRLVAEVINKLREEGKSVLIITHYQ 164 (200)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 44566677777765566777776654
No 423
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.72 E-value=2.8e-08 Score=96.29 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=88.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc------ccCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER------TIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~------~~~g~~~~~~~~~ 261 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+....++...
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~i~~~~q~~~ 91 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI--------SPTSGTLLF--EGEDISTLKPEIYRQQVSYCAQTPT 91 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--------CCCCCeEEE--CCEEcCcCCHHHHHhccEEEecccc
Confidence 55665555 89999999999999999999999976 234444332 221110 0123444455433
Q ss_pred CCCCccccccchhh-hhh----hhcccccccccceE----EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE-
Q 008954 262 PFSGLTTFGGAFLS-KFE----CSQMSHPLLDQVTF----VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL- 329 (547)
Q Consensus 262 ~~~~l~~~~~~~~~-~~~----~~~~~~~ll~~l~l----vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv- 329 (547)
.+. .+..++.... ... ......++++.+.+ .|+ ++-.|+ +++++. ++++++.+++++|++
T Consensus 92 l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~-------laral~~~p~llllDE 163 (225)
T PRK10247 92 LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRIS-------LIRNLQFMPKVLLLDE 163 (225)
T ss_pred ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHH-------HHHHHhcCCCEEEEeC
Confidence 332 2333333110 000 00111233334333 233 234443 555544 899999999999999
Q ss_pred -ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 330 -FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 330 -~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
+.+.+......+.+++..+.+ .+..++++-+..+
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 164 ITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 555554444556677777654 3677777766644
No 424
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.72 E-value=4.2e-08 Score=82.64 Aligned_cols=132 Identities=18% Similarity=0.229 Sum_probs=82.9
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+++++|+.|+|||||+|.|-|.+. .. ..|..+. |
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--ly----kKTQAve-----------------------~----------------- 36 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LY----KKTQAVE-----------------------F----------------- 36 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hh----cccceee-----------------------c-----------------
Confidence 589999999999999999999885 10 0111100 0
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCC--CCCHHHHHHHHHHhCCCCeEEEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKL--DISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~--~~~~~~~~ll~~l~~~~~~iivV 358 (547)
..=..+||||-.-..+. .| ........++|+++++-.+.++ .++.-+..+ ..+|+|-|
T Consensus 37 -------~d~~~IDTPGEy~~~~~----~Y---~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~------~~k~vIgv 96 (148)
T COG4917 37 -------NDKGDIDTPGEYFEHPR----WY---HALITTLQDADVIIYVHAANDPESRFPPGFLDI------GVKKVIGV 96 (148)
T ss_pred -------cCccccCCchhhhhhhH----HH---HHHHHHhhccceeeeeecccCccccCCcccccc------cccceEEE
Confidence 01235899998743211 11 1233346899999999766552 122222111 24569999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+|+.+.+++..+...+. + .+.. +++.+|+.+..|+++
T Consensus 97 VTK~DLaed~dI~~~~~~L~----e-aGa~--~IF~~s~~d~~gv~~ 136 (148)
T COG4917 97 VTKADLAEDADISLVKRWLR----E-AGAE--PIFETSAVDNQGVEE 136 (148)
T ss_pred EecccccchHhHHHHHHHHH----H-cCCc--ceEEEeccCcccHHH
Confidence 99999998777777655442 1 1222 337899999888764
No 425
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.72 E-value=2.6e-08 Score=98.00 Aligned_cols=159 Identities=18% Similarity=0.263 Sum_probs=89.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc--------ccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER--------TIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~--------~~~g~~~~~~~ 259 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|... +....+..+++.+ ++.... ...+...+++.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~--~g~~~~~~~~~~~~~~~~i~~v~q~ 90 (247)
T TIGR00972 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLF--DGQDIYDKKIDVVELRRRVGMVFQK 90 (247)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEE--CCEEccccccchHHHHhheEEEecC
Confidence 45555554 899999999999999999999999872 2100011344333 221110 01234445555
Q ss_pred CCCCCCccccccchhhh-h-------hhhcccccccccceE-------EcC-CCCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 260 DLPFSGLTTFGGAFLSK-F-------ECSQMSHPLLDQVTF-------VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~-~-------~~~~~~~~ll~~l~l-------vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
...+. .+..++..... . +.......+++.+.+ .|. |+-.|+ ++|++. ++++++.+
T Consensus 91 ~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~-------laral~~~ 162 (247)
T TIGR00972 91 PNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLC-------IARALAVE 162 (247)
T ss_pred cccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHH-------HHHHHhcC
Confidence 44444 44444432211 0 000111223333322 333 355554 566554 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
++++|++ +.+.+........+++..+.+ +..++++-+..
T Consensus 163 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~ 203 (247)
T TIGR00972 163 PEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNM 203 (247)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCH
Confidence 9999999 555554445566677777765 36666665543
No 426
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.72 E-value=1.2e-08 Score=110.98 Aligned_cols=157 Identities=19% Similarity=0.233 Sum_probs=93.8
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.+|. .|..++|+|++|||||||++.|+|.. .|+.+.+.+ ++.... ...+...+++..
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~i~~v~q~~ 88 (501)
T PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY--------TRDAGSILY--LGKEVTFNGPKSSQEAGIGIIHQEL 88 (501)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEECCCCCHHHHHhCCEEEEEcch
Confidence 56666555 89999999999999999999999987 233444333 221100 012344455554
Q ss_pred CCCCCccccccchhhh-----------hhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 261 LPFSGLTTFGGAFLSK-----------FECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~-----------~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
..+..++..++..... .........+++.+.+- | .|+-+|+ ++|++. ++++++.+|+
T Consensus 89 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~-------la~al~~~p~ 161 (501)
T PRK10762 89 NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVE-------IAKVLSFESK 161 (501)
T ss_pred hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHH-------HHHHHhcCCC
Confidence 4444455444432110 00011122334444332 3 3455555 566654 8999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++|++ +.+.++.....+.+++..+...+..++++-+..+
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~ 202 (501)
T PRK10762 162 VIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK 202 (501)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 99999 5555544456677778877666667777766544
No 427
>PLN03211 ABC transporter G-25; Provisional
Probab=98.72 E-value=2.5e-08 Score=111.14 Aligned_cols=159 Identities=14% Similarity=0.191 Sum_probs=96.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc--cccCCceeeecCCCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE--RTIPGNTIAVHADLPFSG 265 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~--~~~~g~~~~~~~~~~~~~ 265 (547)
.+++.++. +|.+++|+|++|+|||||+|.|+|... +. ..++.+.+ +|... ........+.+....+..
T Consensus 83 iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~---~~sG~I~i--nG~~~~~~~~~~i~yv~Q~~~l~~~ 154 (659)
T PLN03211 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GN---NFTGTILA--NNRKPTKQILKRTGFVTQDDILYPH 154 (659)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CC---ceeEEEEE--CCEECchhhccceEEECcccccCCc
Confidence 56666544 899999999999999999999999862 11 12333322 33211 112234456666666666
Q ss_pred ccccccchhh-hh---------hhhcccccccccceEE---cC------C-CCCChhhhhhhcccChHHHHHHHhhcCCe
Q 008954 266 LTTFGGAFLS-KF---------ECSQMSHPLLDQVTFV---DT------P-GVLSGEKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 266 l~~~~~~~~~-~~---------~~~~~~~~ll~~l~lv---DT------P-G~~~~~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
++..++.... .. +.......+++.+.+- || + |+..|+++|+. ++++++.++++
T Consensus 155 lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~-------ia~aL~~~P~i 227 (659)
T PLN03211 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVS-------IAHEMLINPSL 227 (659)
T ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHH-------HHHHHHhCCCE
Confidence 6665554221 00 1111223344444442 22 1 34444666655 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++++ +.+.|........++++.+.+.+..++++.+..+
T Consensus 228 LlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 228 LILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence 9999 4455434445667777777766788888877654
No 428
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.71 E-value=5.5e-08 Score=94.21 Aligned_cols=157 Identities=19% Similarity=0.209 Sum_probs=88.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCC--Cccc----------cCCcee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGP--DERT----------IPGNTI 255 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~--~~~~----------~~g~~~ 255 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+-..+. +... ..+...
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--------~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~ 94 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY--------LPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGY 94 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEE
Confidence 45565555 89999999999999999999999987 23444433311111 1000 123444
Q ss_pred eecCCCCCCCccccccchhh----h---hhhhcccccccccceE----EcC-CCCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 256 AVHADLPFSGLTTFGGAFLS----K---FECSQMSHPLLDQVTF----VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~~~----~---~~~~~~~~~ll~~l~l----vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
+++....+..++..++.... . .........++..+.+ .|. ++-.|+ ++|++. ++++++.+
T Consensus 95 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~-------laral~~~ 167 (224)
T TIGR02324 95 VSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN-------IARGFIAD 167 (224)
T ss_pred EecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH-------HHHHHhcC
Confidence 55544444443333332110 0 0001111223333322 232 333444 556544 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
++++|++ +.+.++.......++++.++..+..++++-+.
T Consensus 168 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 168 YPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999999 55555444556667777776667777777665
No 429
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=5.5e-08 Score=90.04 Aligned_cols=130 Identities=18% Similarity=0.281 Sum_probs=74.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~~ 261 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|... |..+.+.+ ++..... .......++...
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--------~~~G~i~~--~g~~~~~~~~~~~~~~i~~~~~~~~ 86 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--------PTSGEILI--DGVDLRDLDLESLRKNIAYVPQDPF 86 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--------CCCCEEEE--CCEEhhhcCHHHHHhhEEEEcCCch
Confidence 45555444 899999999999999999999999872 33344332 2211100 011112222211
Q ss_pred CCCCccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCH
Q 008954 262 PFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISD 339 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~ 339 (547)
.+. .+.. +.+ +..++++++. ++++++.+++++|++ +.+.+.....
T Consensus 87 ~~~-~t~~------------------e~l-------LS~G~~~rl~-------la~al~~~p~llllDEP~~gLD~~~~~ 133 (171)
T cd03228 87 LFS-GTIR------------------ENI-------LSGGQRQRIA-------IARALLRDPPILILDEATSALDPETEA 133 (171)
T ss_pred hcc-chHH------------------HHh-------hCHHHHHHHH-------HHHHHhcCCCEEEEECCCcCCCHHHHH
Confidence 111 0000 111 3334666654 899999999999999 5555544445
Q ss_pred HHHHHHHHHhCCCCeEEEEeccCC
Q 008954 340 EFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 340 ~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
...+++..+.+ +..++++-+..+
T Consensus 134 ~l~~~l~~~~~-~~tii~~sh~~~ 156 (171)
T cd03228 134 LILEALRALAK-GKTVIVIAHRLS 156 (171)
T ss_pred HHHHHHHHhcC-CCEEEEEecCHH
Confidence 66677777654 556666655543
No 430
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.71 E-value=3.1e-08 Score=98.08 Aligned_cols=155 Identities=20% Similarity=0.199 Sum_probs=87.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc------ccCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER------TIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~------~~~g~~~~~~~~~ 261 (547)
.+++.++. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ........++...
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--------~p~~G~i~~--~g~~~~~~~~~~~~~~i~~~~q~~~ 86 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL--------SPDSGEVRL--NGRPLADWSPAELARRRAVLPQHSS 86 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCCEEEE--CCEEcccCCHHHhhhheEEEccCCc
Confidence 56666555 89999999999999999999999987 233343332 121100 0122334444433
Q ss_pred CCCCccccccchhhhh-------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHh------hcC
Q 008954 262 PFSGLTTFGGAFLSKF-------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFA------AKC 323 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~-------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~------~~a 323 (547)
.+...+..++...... ........++..+.+ .| .++-+|+ ++|++. ++++++ .++
T Consensus 87 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~-------la~al~~~~~~~~~p 159 (258)
T PRK13548 87 LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQ-------LARVLAQLWEPDGPP 159 (258)
T ss_pred CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHH-------HHHHHhcccccCCCC
Confidence 2233344333211100 001112233333333 23 3455554 566554 888888 489
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHh-CCCCeEEEEecc
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLR-GNDDKIRVVLNK 361 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~-~~~~~iivVlNK 361 (547)
+++|++ +.+.++.....+.+++..+. ..+..++++-+.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 200 (258)
T PRK13548 160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD 200 (258)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 999999 55555444556667777776 556677776554
No 431
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=3.4e-08 Score=96.90 Aligned_cols=155 Identities=25% Similarity=0.313 Sum_probs=88.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc------ccCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER------TIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~------~~~g~~~~~~~~~ 261 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .|+++.+.+ ++.... ...+...+++...
T Consensus 16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~i~~~~q~~~ 85 (242)
T cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI--------EPTSGEIFI--DGEDIREQDPVELRRKIGYVIQQIG 85 (242)
T ss_pred EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCceEEE--CCeEcCcCChHHhhcceEEEccCcc
Confidence 45555554 89999999999999999999999987 233444332 221110 0123444555544
Q ss_pred CCCCccccccchhh-hh------hhhcccccccccceE-----EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEE
Q 008954 262 PFSGLTTFGGAFLS-KF------ECSQMSHPLLDQVTF-----VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLIL 327 (547)
Q Consensus 262 ~~~~l~~~~~~~~~-~~------~~~~~~~~ll~~l~l-----vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~il 327 (547)
.+...+..++.... .. ........++..+.+ .|. +.-+|+ ++|++. ++++++.+++++|
T Consensus 86 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~-------laral~~~p~lll 158 (242)
T cd03295 86 LFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVG-------VARALAADPPLLL 158 (242)
T ss_pred ccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHH-------HHHHHhcCCCEEE
Confidence 55555555554211 10 001111233333322 233 233443 556544 8999999999999
Q ss_pred EE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEecc
Q 008954 328 LL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNK 361 (547)
Q Consensus 328 lv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK 361 (547)
++ +.+.+........+++..+... +..++++-+.
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 99 4454444445566677766543 5666666554
No 432
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.70 E-value=2e-08 Score=102.83 Aligned_cols=158 Identities=14% Similarity=0.140 Sum_probs=93.9
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc---------cCCceeee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT---------IPGNTIAV 257 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~---------~~g~~~~~ 257 (547)
.++.+.+|+ .|..++|+|++|+|||||+++|+|.. . |+.+.+.+ .|.+... .....+++
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~---~-----p~~G~I~~--~G~~i~~~~~~~~~~~r~~i~~v~ 104 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV---K-----ATDGEVAW--LGKDLLGMKDDEWRAVRSDIQMIF 104 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC---C-----CCCcEEEE--CCEECCcCCHHHHHHHhCceEEEe
Confidence 355666555 89999999999999999999999987 2 33343332 2221110 12344566
Q ss_pred cCCC--CCCCccccccchh---------hhhhhhcccccccccceE----Ec-CCCCCCh-hhhhhhcccChHHHHHHHh
Q 008954 258 HADL--PFSGLTTFGGAFL---------SKFECSQMSHPLLDQVTF----VD-TPGVLSG-EKQRTQRTYDFTGVISWFA 320 (547)
Q Consensus 258 ~~~~--~~~~l~~~~~~~~---------~~~~~~~~~~~ll~~l~l----vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~ 320 (547)
+... .+...+...+... .+.+.......+++.+.+ .+ .|+-+|+ ++|++. ++++++
T Consensus 105 Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~-------iArAL~ 177 (331)
T PRK15079 105 QDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIG-------IARALI 177 (331)
T ss_pred cCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHH-------HHHHHh
Confidence 6531 2333333333211 111111122334444443 12 4566665 566654 899999
Q ss_pred hcCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 321 AKCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 321 ~~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
.+++++|++ +.+.+.....++.+++..+.+ .+..+++|.+..+
T Consensus 178 ~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 178 LEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 999999999 555554455667778877765 3677888766544
No 433
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=2.8e-08 Score=99.14 Aligned_cols=157 Identities=22% Similarity=0.290 Sum_probs=88.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-----c-cCCceeeecCC-
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-----T-IPGNTIAVHAD- 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-----~-~~g~~~~~~~~- 260 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|..+.+.+ ++.... . ......+++..
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~p~~G~I~~--~g~~i~~~~~~~~~~~i~~v~q~~~ 93 (271)
T PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL--------KPQSGEIKI--DGITISKENLKEIRKKIGIIFQNPD 93 (271)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCceEEE--CCEecCcCCHHHHhcceEEEEeCHH
Confidence 45555544 89999999999999999999999987 233444332 221110 0 12234444443
Q ss_pred CCCCCccccccchhhh----h---hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEE
Q 008954 261 LPFSGLTTFGGAFLSK----F---ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILL 328 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~----~---~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ill 328 (547)
..+...+..++..+.. + ........+++.+.+ .|+ |+-.|+ ++|++. ++++++.+++++|+
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~~~p~lllL 166 (271)
T PRK13632 94 NQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVA-------IASVLALNPEIIIF 166 (271)
T ss_pred HhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHH-------HHHHHHcCCCEEEE
Confidence 1333444444432110 0 001111223333333 332 344554 555544 89999999999999
Q ss_pred E--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 329 L--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 329 v--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
+ +.+.+......+.+++..+... +..++++-+..+
T Consensus 167 DEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 204 (271)
T PRK13632 167 DESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD 204 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh
Confidence 9 5565544455666777776654 366777666543
No 434
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.70 E-value=3.9e-08 Score=94.84 Aligned_cols=156 Identities=18% Similarity=0.248 Sum_probs=83.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----------cccCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----------RTIPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----------~~~~g~~~~~ 257 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|... |+.+.+.+ ++... ....+.....
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--------~~~G~i~~--~g~~~~~~~~~~~~~~~~~~i~~~~ 85 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--------TLEGKVHW--SNKNESEPSFEATRSRNRYSVAYAA 85 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--------CCCCeEEE--CCcccccccccccchhhcceEEEEc
Confidence 45555544 899999999999999999999999872 23333322 11110 0012333444
Q ss_pred cCCCCCCCccccccchhhh-hhhhcccccccccce--------------EEc-CCCCCCh-hhhhhhcccChHHHHHHHh
Q 008954 258 HADLPFSGLTTFGGAFLSK-FECSQMSHPLLDQVT--------------FVD-TPGVLSG-EKQRTQRTYDFTGVISWFA 320 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ll~~l~--------------lvD-TPG~~~~-~~~~~~~~~~~~~~~~~~~ 320 (547)
+....+ ..+..++..... ..... ....++.+. .++ .++-.++ +++++. ++++++
T Consensus 86 q~~~~~-~~t~~~nl~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~-------laral~ 156 (218)
T cd03290 86 QKPWLL-NATVEENITFGSPFNKQR-YKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRIC-------VARALY 156 (218)
T ss_pred CCCccc-cccHHHHHhhcCcCCHHH-HHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHH-------HHHHHh
Confidence 443333 223333322110 00000 000111111 112 2444554 556554 899999
Q ss_pred hcCCeEEEE--ecCCCCCCCHHHHH--HHHHHhCCCCeEEEEeccCCC
Q 008954 321 AKCDLILLL--FDPHKLDISDEFKR--VIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 321 ~~aD~illv--~d~~~~~~~~~~~~--ll~~l~~~~~~iivVlNK~D~ 364 (547)
.+++++|++ +.+.+....+.+.+ +++.+++.+..++++-+..+.
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 999999999 44444333344444 566666667788888776543
No 435
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.70 E-value=5e-08 Score=91.12 Aligned_cols=136 Identities=21% Similarity=0.340 Sum_probs=77.1
Q ss_pred ccCCCCC--CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCcc
Q 008954 190 FLTNSDF--DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLT 267 (547)
Q Consensus 190 ~~~~~~~--~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~ 267 (547)
.+.+.++ .+|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++....... . . .+..
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~--------~~~~G~v~~--~g~~~~~~~---~--~---~~~~-- 73 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL--------KPSSGEILL--DGKDLASLS---P--K---ELAR-- 73 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEECCcCC---H--H---HHHH--
Confidence 4555554 489999999999999999999999987 344444433 111100000 0 0 0000
Q ss_pred ccccchhhhhhhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHH
Q 008954 268 TFGGAFLSKFECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDE 340 (547)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~ 340 (547)
..+ ++. ++++.+.+ ++. +...|+ +++++. ++++++.+++++|++ +.+.+....+.
T Consensus 74 ~i~--~~~---------q~l~~~gl~~~~~~~~~~LS~G~~qrl~-------laral~~~p~llllDEP~~~LD~~~~~~ 135 (180)
T cd03214 74 KIA--YVP---------QALELLGLAHLADRPFNELSGGERQRVL-------LARALAQEPPILLLDEPTSHLDIAHQIE 135 (180)
T ss_pred HHh--HHH---------HHHHHcCCHhHhcCCcccCCHHHHHHHH-------HHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 000 000 01111211 222 344444 556544 899999999999999 54555444456
Q ss_pred HHHHHHHHhCC-CCeEEEEeccCC
Q 008954 341 FKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 341 ~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
..+++..+++. +..++++-+..+
T Consensus 136 ~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 136 LLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH
Confidence 66777777654 567777766543
No 436
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.70 E-value=4.3e-08 Score=96.83 Aligned_cols=160 Identities=17% Similarity=0.226 Sum_probs=88.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------c-cCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------T-IPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~-~~g~~~~~~~ 259 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|... ...+.|+.+.+.+ ++.... . ..+...+++.
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~--~g~~i~~~~~~~~~~~~~i~~v~q~ 95 (253)
T PRK14242 21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND---LIPGARVEGEILL--DGENIYDPHVDVVELRRRVGMVFQK 95 (253)
T ss_pred eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc---cCCCCCCceEEEE--CCEEccccccCHHHHhhcEEEEecC
Confidence 55666554 899999999999999999999999741 1111133444333 221110 0 1234445555
Q ss_pred CCCCCCccccccchhhh-h-------hhhcccccccccceE-------EcC-CCCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 260 DLPFSGLTTFGGAFLSK-F-------ECSQMSHPLLDQVTF-------VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~-~-------~~~~~~~~ll~~l~l-------vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
...+. .+..++..... . ........+++.+.+ .|. ++-.|+ ++|++. ++++++.+
T Consensus 96 ~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~-------laral~~~ 167 (253)
T PRK14242 96 PNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC-------IARALAVE 167 (253)
T ss_pred CCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH-------HHHHHhcC
Confidence 44443 24444432110 0 000011112222222 232 444554 566554 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++++|++ +.+.+......+.+++..+.. +..++++-+..+
T Consensus 168 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~ 209 (253)
T PRK14242 168 PEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ 209 (253)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH
Confidence 9999999 555554445566677777754 567777766543
No 437
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=6.7e-08 Score=94.18 Aligned_cols=180 Identities=18% Similarity=0.170 Sum_probs=105.9
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEE-EEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVV-VMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~-i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
.-..|+.+|+--.|||||..+|.|.-. ..-+.+-..+ +++ +.|.+. ....+.+...+ .. +..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT--~~hseElkRg-itIkLGYAd~-----~i~kC~~c~~~-~~-------y~~~ 72 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWT--DRHSEELKRG-ITIKLGYADA-----KIYKCPECYRP-EC-------YTTE 72 (415)
T ss_pred cceEeeeeeecccchhhheehhhceee--echhHHHhcC-cEEEeccccC-----ceEeCCCCCCC-cc-------cccC
Confidence 345799999999999999999999762 1111111111 111 111110 00001111111 11 1111
Q ss_pred hhhh--cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCC-C
Q 008954 277 FECS--QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGND-D 353 (547)
Q Consensus 277 ~~~~--~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~-~ 353 (547)
..|. ....++++.+.|||.||+.--+...++ -+.-.|..|+|+++..+-.+++..+.+-.|.-.+ +
T Consensus 73 ~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLs-----------GAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik 141 (415)
T COG5257 73 PKCPNCGAETELVRRVSFVDAPGHETLMATMLS-----------GAALMDGALLVIAANEPCPQPQTREHLMALEIIGIK 141 (415)
T ss_pred CCCCCCCCCccEEEEEEEeeCCchHHHHHHHhc-----------chhhhcceEEEEecCCCCCCCchHHHHHHHhhhccc
Confidence 1122 123367789999999998543222221 1345588899999988666666666665544322 5
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.+++|-||+|+++.++..+-|.++...+..... ...+.+++||..+.+++.
T Consensus 142 ~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~A-e~aPIIPiSA~~~~NIDa 192 (415)
T COG5257 142 NIIIVQNKIDLVSRERALENYEQIKEFVKGTVA-ENAPIIPISAQHKANIDA 192 (415)
T ss_pred eEEEEecccceecHHHHHHHHHHHHHHhccccc-CCCceeeehhhhccCHHH
Confidence 689999999999998888888777544433221 234568999999988764
No 438
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.70 E-value=2.7e-08 Score=98.99 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=87.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~~ 261 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... ..+...+++...
T Consensus 22 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~i~~v~q~~~ 91 (265)
T PRK10253 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM--------TPAHGHVWL--DGEHIQHYASKEVARRIGLLAQNAT 91 (265)
T ss_pred EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC--------CCCCcEEEE--CCEEhhhCCHHHHhhheEEeeccCc
Confidence 56666655 89999999999999999999999987 233344332 2211100 112334444433
Q ss_pred CCCCccccccchhhh-----------hhhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 262 PFSGLTTFGGAFLSK-----------FECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~-----------~~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
.+...+...+..... .........+++.+.+ .| .++-+|+ +++++. ++++++.++++
T Consensus 92 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~-------laral~~~p~l 164 (265)
T PRK10253 92 TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAW-------IAMVLAQETAI 164 (265)
T ss_pred CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHH-------HHHHHhcCCCE
Confidence 333333333321100 0000111222222222 23 2344444 555544 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
+|++ +.+.+........+++..+.+ .+..++++.+..+
T Consensus 165 lllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~ 205 (265)
T PRK10253 165 MLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN 205 (265)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999 555554444556677777755 3667777766544
No 439
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=2.6e-08 Score=100.18 Aligned_cols=155 Identities=16% Similarity=0.219 Sum_probs=90.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----------ccCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----------TIPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----------~~~g~~~~~ 257 (547)
.+++.++. .|.+++|+|++|+|||||+++|+|.. .|+.+.+.+ ++.... ...+...++
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~~~~ig~v~ 91 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL--------KPSSGTITI--AGYHITPETGNKNLKKLRKKVSLVF 91 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCcEEEE--CCEECccccccchHHHHHhceEEEE
Confidence 56666555 89999999999999999999999987 234444333 221110 012344455
Q ss_pred cCC-CCCCCccccccchhhh-------hhhhcccccccccceE----EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 258 HAD-LPFSGLTTFGGAFLSK-------FECSQMSHPLLDQVTF----VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 258 ~~~-~~~~~l~~~~~~~~~~-------~~~~~~~~~ll~~l~l----vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
+.. ..+...+..++..... .........++..+.+ .+. ++-+|+ ++|++. ++++++.++
T Consensus 92 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~-------laral~~~p 164 (287)
T PRK13641 92 QFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVA-------IAGVMAYEP 164 (287)
T ss_pred eChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHH-------HHHHHHcCC
Confidence 542 1121234444432111 0011122333444433 233 455554 566554 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+++|++ +.+.++.....+.+++..+.+.+..++++-+.
T Consensus 165 ~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~ 204 (287)
T PRK13641 165 EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204 (287)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 999999 55555444566677787776666777777664
No 440
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=2.8e-08 Score=101.32 Aligned_cols=158 Identities=16% Similarity=0.229 Sum_probs=90.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEe--CCC-----------------c-
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMS--GPD-----------------E- 247 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~--~~~-----------------~- 247 (547)
++++.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+-.. +.. .
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~--------~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI--------KSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFK 112 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCCeEEECCEEcccccccccccccccccccchHH
Confidence 56666554 89999999999999999999999987 233343333110 000 0
Q ss_pred cccCCceeeecCC--CCCCCccccccchhh-------hhhhhcccccccccceE----EcC-CCCCCh-hhhhhhcccCh
Q 008954 248 RTIPGNTIAVHAD--LPFSGLTTFGGAFLS-------KFECSQMSHPLLDQVTF----VDT-PGVLSG-EKQRTQRTYDF 312 (547)
Q Consensus 248 ~~~~g~~~~~~~~--~~~~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~l----vDT-PG~~~~-~~~~~~~~~~~ 312 (547)
.......++++.. ..+. .+..++.... ..+.......++..+.+ .+. |.-+|+ ++|++.
T Consensus 113 ~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRva----- 186 (320)
T PRK13631 113 ELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVA----- 186 (320)
T ss_pred HHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHH-----
Confidence 0012234455542 2232 2333333211 00111122233333333 232 344454 566554
Q ss_pred HHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 313 TGVISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 313 ~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++++++.+++++|++ +.+.+......+.+++..+...+..+++|-+..+
T Consensus 187 --iAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~ 237 (320)
T PRK13631 187 --IAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237 (320)
T ss_pred --HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 899999999999999 5555544455666777777666778888877655
No 441
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.69 E-value=7e-08 Score=93.61 Aligned_cols=160 Identities=14% Similarity=0.192 Sum_probs=91.5
Q ss_pred cccCCCCC--CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc---cccCCceeeecCCCCC
Q 008954 189 PFLTNSDF--DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE---RTIPGNTIAVHADLPF 263 (547)
Q Consensus 189 ~~~~~~~~--~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~---~~~~g~~~~~~~~~~~ 263 (547)
..+.+.++ .+|..++|+|++|+|||||++.|+|... ...|+.+.+.+ .+... ....+...+++....+
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~-----~~~~~~G~i~~--~g~~~~~~~~~~~i~~~~q~~~~~ 93 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE-----GGGTTSGQILF--NGQPRKPDQFQKCVAYVRQDDILL 93 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC-----CCCCCceEEEE--CCEECChHHhcccEEEeCCCCccC
Confidence 35555554 4899999999999999999999999862 01244444433 22111 1122344455555555
Q ss_pred CCccccccchhh-hhh---------hhccccc-ccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEE
Q 008954 264 SGLTTFGGAFLS-KFE---------CSQMSHP-LLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLIL 327 (547)
Q Consensus 264 ~~l~~~~~~~~~-~~~---------~~~~~~~-ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~il 327 (547)
.+++..++.... ... ....... .+..+.+ .++ ++-+|+ +++++. ++++++.+++++|
T Consensus 94 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~~~p~ill 166 (226)
T cd03234 94 PGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVS-------IAVQLLWDPKVLI 166 (226)
T ss_pred cCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHH-------HHHHHHhCCCEEE
Confidence 555555444211 000 0001111 3333332 222 344443 555544 8999999999999
Q ss_pred EE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 328 LL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 328 lv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
++ +.+.+......+.+++..+...+..++++.+..
T Consensus 167 lDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 167 LDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 99 445554445566677777665567777777765
No 442
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=3.1e-08 Score=98.89 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=86.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc--------ccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER--------TIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~--------~~~g~~~~~~~ 259 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+...+++.
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~i~~~~~~~~~~~~~i~~v~q~ 85 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL--------RPQKGAVLW--QGKPLDYSKRGLLALRQQVATVFQD 85 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--------CCCccEEEE--CCEEcccccCCHHHHHhheEEEeeC
Confidence 56666555 89999999999999999999999987 234444332 221100 01223344443
Q ss_pred CC-CCCCccccccchhh-------hhhhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 260 DL-PFSGLTTFGGAFLS-------KFECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 260 ~~-~~~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
.. .+...+...+.... ..........++..+.+ .++ ++.+|+ ++|++. ++++++.+++++
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~-------laraL~~~p~ll 158 (271)
T PRK13638 86 PEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVA-------IAGALVLQARYL 158 (271)
T ss_pred hhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHH-------HHHHHHcCCCEE
Confidence 21 11111111121110 00000111223333322 233 344554 566554 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
|++ +.+.+........+++..+...+..++++.+..+
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~ 197 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID 197 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 999 5555544445666777777655667777766443
No 443
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.68 E-value=4.2e-08 Score=96.29 Aligned_cols=146 Identities=19% Similarity=0.149 Sum_probs=78.4
Q ss_pred CCCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccch
Q 008954 194 SDFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAF 273 (547)
Q Consensus 194 ~~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 273 (547)
..+..|.+++|+|++|+|||||++.|+|... |+.+.+.+ .+. ......+....+...+...+..
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--------p~~G~i~~--~g~------~i~~~~q~~~~~~~~tv~e~l~ 83 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLK--------PDEGDIEI--ELD------TVSYKPQYIKADYEGTVRDLLS 83 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--------CCCCeEEE--CCc------eEEEecccccCCCCCCHHHHHH
Confidence 3566899999999999999999999999872 33333221 110 1111222211111122222211
Q ss_pred h--hhh-hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHH
Q 008954 274 L--SKF-ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKR 343 (547)
Q Consensus 274 ~--~~~-~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ 343 (547)
. ... ........+++.+.+ .|. ++-+|+ ++|++. ++++++.+++++|++ +.+.++.......+
T Consensus 84 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~-------iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 84 SITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVA-------IAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred HHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0 000 000001122333322 232 344554 566654 899999999999999 44544444455666
Q ss_pred HHHHHhC-CCCeEEEEeccC
Q 008954 344 VIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 344 ll~~l~~-~~~~iivVlNK~ 362 (547)
+++.+.. .+..+++|-+..
T Consensus 157 ~l~~~~~~~~~tiiivsHd~ 176 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDI 176 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCH
Confidence 7777654 366777775543
No 444
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.68 E-value=3.7e-08 Score=97.79 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=90.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----------c-cCCceee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----------T-IPGNTIA 256 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----------~-~~g~~~~ 256 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|... +.++ +.+.+.+ +|.... . ..+...+
T Consensus 19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~--~~G~i~~--~g~~~~~~~~~~~~~~~~~~~i~~~ 91 (262)
T PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKS--AGSHIEL--LGRTVQREGRLARDIRKSRANTGYI 91 (262)
T ss_pred EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCC--CceEEEE--CCEecccccccchhHHHHHhheEEE
Confidence 45565555 899999999999999999999999872 2211 1122222 221110 0 1123344
Q ss_pred ecCCCCCCCccccccchhhh---------------hhhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHH
Q 008954 257 VHADLPFSGLTTFGGAFLSK---------------FECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVI 316 (547)
Q Consensus 257 ~~~~~~~~~l~~~~~~~~~~---------------~~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~ 316 (547)
++....+..++...+..... .........++..+.+ .| .++.+|+ +++++. ++
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la 164 (262)
T PRK09984 92 FQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA-------IA 164 (262)
T ss_pred ccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH-------HH
Confidence 45444444444444432110 0011112233333333 23 3455554 566654 89
Q ss_pred HHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 317 SWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 317 ~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
++++.+++++|++ +.+.+......+.++++.+.. .+..++++.+..+
T Consensus 165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~ 214 (262)
T PRK09984 165 RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred HHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999999999999 555554445566777777754 3677777766543
No 445
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.68 E-value=5.7e-08 Score=90.58 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=76.2
Q ss_pred ccCCCCC--CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc-----cCCceeeecCCCC
Q 008954 190 FLTNSDF--DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT-----IPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~--~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~-----~~g~~~~~~~~~~ 262 (547)
.+.+.++ .+|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++..... ......+.+....
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~i~~~~q~~~~ 86 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL--------KPQQGEITL--DGVPVSDLEKALSSLISVLNQRPYL 86 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC--------CCCCCEEEE--CCEEHHHHHHHHHhhEEEEccCCee
Confidence 4555444 489999999999999999999999987 233444332 2211000 0111222222111
Q ss_pred CCCccccccchhhhhhhhcccccccccceEEcCCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCH
Q 008954 263 FSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISD 339 (547)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~ 339 (547)
+. .+.. +.+ ++..++ +++++. ++++++.+++++|++ +++.+....+
T Consensus 87 ~~-~tv~------------------~~i-----~~~LS~G~~qrv~-------laral~~~p~~lllDEP~~~LD~~~~~ 135 (178)
T cd03247 87 FD-TTLR------------------NNL-----GRRFSGGERQRLA-------LARILLQDAPIVLLDEPTVGLDPITER 135 (178)
T ss_pred ec-ccHH------------------Hhh-----cccCCHHHHHHHH-------HHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 10 0000 111 555554 555544 899999999999999 5555544445
Q ss_pred HHHHHHHHHhCCCCeEEEEeccCC
Q 008954 340 EFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 340 ~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
...+++..+. .+..++++-+..+
T Consensus 136 ~l~~~l~~~~-~~~tii~~sh~~~ 158 (178)
T cd03247 136 QLLSLIFEVL-KDKTLIWITHHLT 158 (178)
T ss_pred HHHHHHHHHc-CCCEEEEEecCHH
Confidence 5666776664 3566777666543
No 446
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.68 E-value=2.4e-08 Score=101.16 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=91.6
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-----cccCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-----RTIPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-----~~~~g~~~~~~~~~~ 262 (547)
++++.+|. +|..++|+|++|+|||||++.|+|.. .|+.+++.+ .|... ....+...+++....
T Consensus 17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~--------~~~~G~i~i--~g~~~~~~~~~~~~~ig~~~q~~~l 86 (301)
T TIGR03522 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL--------PPDSGSVQV--CGEDVLQNPKEVQRNIGYLPEHNPL 86 (301)
T ss_pred EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEEcccChHHHHhceEEecCCCCC
Confidence 56666555 89999999999999999999999987 344454443 22111 112244556666555
Q ss_pred CCCccccccchh-hhhh------hhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE-
Q 008954 263 FSGLTTFGGAFL-SKFE------CSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL- 329 (547)
Q Consensus 263 ~~~l~~~~~~~~-~~~~------~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv- 329 (547)
+.+++..++... .+.. .......++..+.+- | .++..|+ +++++. ++++++.+++++|++
T Consensus 87 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~lliLDE 159 (301)
T TIGR03522 87 YLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVG-------LAQALIHDPKVLILDE 159 (301)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHH-------HHHHHhcCCCEEEEcC
Confidence 666655555321 1110 011122333333332 2 2233443 556544 899999999999999
Q ss_pred -ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 330 -FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 330 -~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+.+.++.....+.++++.+++ +..++++-+-
T Consensus 160 Pt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~ 191 (301)
T TIGR03522 160 PTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHI 191 (301)
T ss_pred CcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 555554445667777777764 5556555443
No 447
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.68 E-value=5.8e-08 Score=93.99 Aligned_cols=150 Identities=19% Similarity=0.210 Sum_probs=83.4
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-ccCCceeeecCCCCC--CCccccccc
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-TIPGNTIAVHADLPF--SGLTTFGGA 272 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-~~~g~~~~~~~~~~~--~~l~~~~~~ 272 (547)
+.+|.+++|+|++|+|||||++.|+|.. .|..+.+.+ ++.... .......+++....+ ...+..++.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l 72 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLI--------PPAKGTVKV--AGASPGKGWRHIGYVPQRHEFAWDFPISVAHTV 72 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCccchHhhCcEEEecccccccCCCCccHHHHH
Confidence 5688999999999999999999999987 233343332 222110 112233333332111 112222221
Q ss_pred hhh-----------hhhhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCC
Q 008954 273 FLS-----------KFECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHK 334 (547)
Q Consensus 273 ~~~-----------~~~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~ 334 (547)
... ..........+++.+.+ .+ .++-.|+ +++++. ++++++.+++++|++ +.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------laral~~~p~llilDEP~~~LD 145 (223)
T TIGR03771 73 MSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVL-------VARALATRPSVLLLDEPFTGLD 145 (223)
T ss_pred HhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCcccCC
Confidence 100 00000111222333322 23 3455554 555544 899999999999999 55555
Q ss_pred CCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 335 LDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 335 ~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
........+++..+.+.+..++++-+..
T Consensus 146 ~~~~~~l~~~l~~~~~~~~tvii~sH~~ 173 (223)
T TIGR03771 146 MPTQELLTELFIELAGAGTAILMTTHDL 173 (223)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4455667777777766677777776643
No 448
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.68 E-value=2.6e-08 Score=102.05 Aligned_cols=161 Identities=14% Similarity=0.178 Sum_probs=92.3
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc--------c--CCceee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT--------I--PGNTIA 256 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~--------~--~g~~~~ 256 (547)
.++++.+|+ .|.+++|+|++|+|||||+++|+|... +.. .+.+.+.+ +|.+... . ..+.++
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~--~~sG~I~~--~G~~i~~~~~~~~~~~r~~~i~~v 102 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANG--RIGGSATF--NGREILNLPEKELNKLRAEQISMI 102 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCC--CCCeEEEE--CCEECCcCCHHHHHHHhcCCEEEE
Confidence 356666655 899999999999999999999999873 210 12333322 3322111 1 234556
Q ss_pred ecCCC--CCCCccccccch--hh------hhhhhcccccccccceEEc-------CCCCCCh-hhhhhhcccChHHHHHH
Q 008954 257 VHADL--PFSGLTTFGGAF--LS------KFECSQMSHPLLDQVTFVD-------TPGVLSG-EKQRTQRTYDFTGVISW 318 (547)
Q Consensus 257 ~~~~~--~~~~l~~~~~~~--~~------~~~~~~~~~~ll~~l~lvD-------TPG~~~~-~~~~~~~~~~~~~~~~~ 318 (547)
++... ....++...+.. +. ..+.......+++.+.+-+ .|.-+|+ ++|++. ++++
T Consensus 103 ~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~-------IArA 175 (330)
T PRK09473 103 FQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVM-------IAMA 175 (330)
T ss_pred EcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHH-------HHHH
Confidence 66542 222222222211 00 0011112233344443321 3555555 566654 8999
Q ss_pred HhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 319 FAAKCDLILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 319 ~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
++.+++++|++ +.+.+.....++.+++..+.+. +..+++|-+-.+
T Consensus 176 L~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 176 LLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 99999999999 5565545556677778777653 677777766544
No 449
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.68 E-value=4.2e-08 Score=96.84 Aligned_cols=159 Identities=16% Similarity=0.197 Sum_probs=86.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-------cccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-------RTIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-------~~~~g~~~~~~~~ 260 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|... . .|+.+.+.+ ++... ....+...+++..
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--~----~~~~G~i~~--~g~~~~~~~~~~~~~~~~~~~~q~~ 93 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA--Y----KILEGDILF--KGESILDLEPEERAHLGIFLAFQYP 93 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc--C----cCCCceEEE--CCEEcccCChhhhheeeEEEEeccc
Confidence 56665555 899999999999999999999999631 0 233333332 11110 0001222333443
Q ss_pred CCCCCccccccchhh-hh-------------hhhcccccccccceE----Ec-CCC-CCC-hhhhhhhcccChHHHHHHH
Q 008954 261 LPFSGLTTFGGAFLS-KF-------------ECSQMSHPLLDQVTF----VD-TPG-VLS-GEKQRTQRTYDFTGVISWF 319 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~-~~-------------~~~~~~~~ll~~l~l----vD-TPG-~~~-~~~~~~~~~~~~~~~~~~~ 319 (547)
..+.+.+...+.... .. +.......++..+.+ .| .|+ ..| |+++++. +++++
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~-------la~al 166 (252)
T CHL00131 94 IEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE-------ILQMA 166 (252)
T ss_pred cccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH-------HHHHH
Confidence 333333322221100 00 000011222333222 33 343 244 4666554 89999
Q ss_pred hhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 320 AAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 320 ~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+.+++++|++ +.+.+......+.+++..+...+..++++-+..+
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 167 LLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 9999999999 5555544455666777777655677777766544
No 450
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=3.3e-08 Score=95.06 Aligned_cols=149 Identities=19% Similarity=0.240 Sum_probs=84.9
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----------cccCCceeeecCCCCCCCc
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----------RTIPGNTIAVHADLPFSGL 266 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----------~~~~g~~~~~~~~~~~~~l 266 (547)
.. ..++|+|++|+|||||++.|+|... |..+++.+ ++... ....+....++....+...
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~--------~~~G~i~~--~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEK--------PDGGTIVL--NGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHL 90 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCC--------CCCceEEE--CCEecccccchhhhhhHhhcEEEEecCCccCCCC
Confidence 37 8999999999999999999999872 33333322 11110 0012334455554444444
Q ss_pred cccccchhhhh-----hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCC
Q 008954 267 TTFGGAFLSKF-----ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHK 334 (547)
Q Consensus 267 ~~~~~~~~~~~-----~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~ 334 (547)
+...+...... ........+++.+.+ .+ .|+-+|+ +++++. ++++++.+++++|++ +.+.+
T Consensus 91 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------la~al~~~p~llllDEPt~~LD 163 (214)
T cd03297 91 NVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVA-------LARALAAQPELLLLDEPFSALD 163 (214)
T ss_pred CHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHH-------HHHHHhcCCCEEEEcCCcccCC
Confidence 54444321110 001112233333333 23 3455554 556544 899999999999999 55555
Q ss_pred CCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 335 LDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 335 ~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
........+++..+... +..++++-+..+
T Consensus 164 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 164 RALRLQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 44445666777776543 667777766543
No 451
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=1.7e-08 Score=97.59 Aligned_cols=167 Identities=23% Similarity=0.284 Sum_probs=95.4
Q ss_pred hccCCccccccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCC------ccc-cC
Q 008954 181 YRFNDFVSPFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPD------ERT-IP 251 (547)
Q Consensus 181 ~~~~~~~~~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~------~~~-~~ 251 (547)
|.|... ..++.+.++. .|..++|+|+||+|||||++.|.|.. .|+++.+.+ .+.. ... ..
T Consensus 11 ~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl--------~p~~G~v~~--~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 11 FRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL--------KPTSGEVLV--DGLDTSSEKSLLELRQ 79 (235)
T ss_pred EEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC--------cCCCCEEEE--CCeeccchhhHHHhhc
Confidence 344443 4566666655 78999999999999999999999998 344444422 1111 001 11
Q ss_pred CceeeecCC-CCCCCccccccc-h------hhhhhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHH
Q 008954 252 GNTIAVHAD-LPFSGLTTFGGA-F------LSKFECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISW 318 (547)
Q Consensus 252 g~~~~~~~~-~~~~~l~~~~~~-~------~~~~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~ 318 (547)
...+++|.. ..+-.-+...+. | +...+........+..+.+- | -|-.+|+ ++|++. +|..
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRva-------IA~v 152 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVA-------IAGV 152 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHH-------hhHH
Confidence 122333321 111111111111 1 11222333334444444443 2 3444444 566654 8888
Q ss_pred HhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCCCc
Q 008954 319 FAAKCDLILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKADQV 365 (547)
Q Consensus 319 ~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D~~ 365 (547)
++.+|+++|++ +.+.++....+..+++..+... +..+|++-+.+|.+
T Consensus 153 La~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~ 202 (235)
T COG1122 153 LAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELV 202 (235)
T ss_pred HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHH
Confidence 89999999999 5555555566778888888776 56777777665543
No 452
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.68 E-value=1.5e-07 Score=76.62 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhhC-CCCCC-cccHHHHHHHHhh-----CC--CCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhc
Q 008954 15 HQKIYREWFDIAD-SDGDG-RITGNDATKFLGL-----SK--LSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQA 85 (547)
Q Consensus 15 e~~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~~-----~~--l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~ 85 (547)
-...+.++|..+| .+++| +|+.++++.+|+. .+ .+.+++..+++.+|.|++|.|+|++|+.++.-+..++|
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~~~ 85 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTACH 85 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHh
Confidence 4678999999998 89999 5999999999998 44 56788999999999999999999999999988888887
Q ss_pred CC
Q 008954 86 GR 87 (547)
Q Consensus 86 g~ 87 (547)
+.
T Consensus 86 ~~ 87 (88)
T cd05027 86 EF 87 (88)
T ss_pred hh
Confidence 64
No 453
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.67 E-value=6.3e-08 Score=74.44 Aligned_cols=60 Identities=28% Similarity=0.396 Sum_probs=52.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhhCCC--CH----HHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 18 IYREWFDIADSDGDGRITGNDATKFLGLSKL--SR----QELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 18 ~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l--~~----~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
+++++|+.+|.|++|+|+.+|+..++...+. +. +.+..+|+.+|.+++|.|+++||..+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5789999999999999999999999999543 23 456667999999999999999998765
No 454
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=4.3e-08 Score=97.10 Aligned_cols=159 Identities=20% Similarity=0.268 Sum_probs=89.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc--------cccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE--------RTIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~--------~~~~g~~~~~~~ 259 (547)
.+.+.+++ .|..++|+|++|+|||||++.|+|... +..+.|+.+.+.+ ++... ....+...+++.
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~--~g~~i~~~~~~~~~~~~~i~~v~q~ 101 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSI--EGEDIYEPDVDVVELRKNVGMVFQK 101 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEE--CCEEcccccchHHHHhhhEEEEecC
Confidence 45555544 899999999999999999999999862 2111233444332 22110 011234445555
Q ss_pred CCCCCCccccccchhhh-hh------hhcccccccccceE-------EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 260 DLPFSGLTTFGGAFLSK-FE------CSQMSHPLLDQVTF-------VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~-~~------~~~~~~~ll~~l~l-------vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
...+. .+..++..... .. .......+++.+.+ .|+ ++-+|+ ++|++. ++++++.++
T Consensus 102 ~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~-------laral~~~p 173 (258)
T PRK14268 102 PNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC-------IARTLAVKP 173 (258)
T ss_pred CccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH-------HHHHHHcCC
Confidence 44444 44444442211 00 00011223333222 233 334444 566554 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
+++|++ +.+.+........++++.+.+ +..++++-+..
T Consensus 174 ~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~ 213 (258)
T PRK14268 174 KIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM 213 (258)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH
Confidence 999999 555554445666777777754 56666665543
No 455
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.67 E-value=3.6e-08 Score=106.96 Aligned_cols=157 Identities=13% Similarity=0.202 Sum_probs=91.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.+|. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+...+++..
T Consensus 13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~i~~v~q~~ 82 (491)
T PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY--------QKDSGSILF--QGKEIDFKSSKEALENGISMVHQEL 82 (491)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--------CCCceEEEE--CCEECCCCCHHHHHhCCEEEEeccc
Confidence 55666555 89999999999999999999999987 233344332 221100 012344455544
Q ss_pred CCCCCccccccchhhh----------hhhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 261 LPFSGLTTFGGAFLSK----------FECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~----------~~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
..+..++..++..... .........++..+.+ .| .++-+|+ ++|++. ++++++.++++
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-------lA~al~~~p~l 155 (491)
T PRK10982 83 NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIE-------IAKAFSYNAKI 155 (491)
T ss_pred ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHH-------HHHHHHhCCCE
Confidence 3444444444432110 0001112223333332 23 2445554 666654 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+|++ +.+.++.......+++..+...+..++++-+..+
T Consensus 156 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~ 195 (491)
T PRK10982 156 VIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME 195 (491)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 9999 5555544455666777777666777777777644
No 456
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=3.5e-08 Score=107.44 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=94.8
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHA 259 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~ 259 (547)
..+.+.+|. .|..++|+|++|||||||++.|+|... + .|+.+.+.+ ++.... ...+.+.+++.
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~---~~~~G~i~~--~g~~~~~~~~~~~~~~~i~~v~q~ 90 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---H---GTYEGEIIF--EGEELQASNIRDTERAGIAIIHQE 90 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---C---CCCCeEEEE--CCEECCCCCHHHHHHCCeEEEEec
Confidence 356666655 899999999999999999999999762 1 123344332 221110 01234555665
Q ss_pred CCCCCCccccccchhhh----------hhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 260 DLPFSGLTTFGGAFLSK----------FECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~----------~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
...+..++..++..... .........++..+.+- | .++-+|+ ++|++. ++++++.+++
T Consensus 91 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~-------la~al~~~p~ 163 (506)
T PRK13549 91 LALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE-------IAKALNKQAR 163 (506)
T ss_pred cccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH-------HHHHHhcCCC
Confidence 44455555554432110 00011123334444332 2 2344554 666655 8999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++|++ +.+.++....+..+++..+...+..++++-+..+
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~ 204 (506)
T PRK13549 164 LLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN 204 (506)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 99999 5555544456667777777655677777766544
No 457
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.67 E-value=4.1e-08 Score=107.01 Aligned_cols=156 Identities=14% Similarity=0.241 Sum_probs=91.6
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecC-
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHA- 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~- 259 (547)
.+.+.+|. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+...+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--------~p~~G~I~~--~g~~~~~~~~~~~~~~~i~~v~q~~ 347 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD--------KRAGGEIRL--NGKDISPRSPLDAVKKGMAYITESR 347 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------cCCCCeEEE--CCEECCCCCHHHHHHCCcEEccCcc
Confidence 45565544 89999999999999999999999987 233444332 221100 01233444443
Q ss_pred --CCCCCCccccccchhh----------------hhhhhcccccccccceE----EcC-CCCCCh-hhhhhhcccChHHH
Q 008954 260 --DLPFSGLTTFGGAFLS----------------KFECSQMSHPLLDQVTF----VDT-PGVLSG-EKQRTQRTYDFTGV 315 (547)
Q Consensus 260 --~~~~~~l~~~~~~~~~----------------~~~~~~~~~~ll~~l~l----vDT-PG~~~~-~~~~~~~~~~~~~~ 315 (547)
...+..++..++.... ..........+++.+.+ .+. |+-+|+ ++|++. +
T Consensus 348 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~-------l 420 (510)
T PRK09700 348 RDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL-------I 420 (510)
T ss_pred ccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH-------H
Confidence 1233344444433211 00000112234444444 233 455665 666655 8
Q ss_pred HHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 316 ISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 316 ~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
+++++.+++++|++ +.+.++.......++++.+...+..++++-+..
T Consensus 421 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred HHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 99999999999999 556655555667788887766677777776543
No 458
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=2.5e-07 Score=80.00 Aligned_cols=156 Identities=16% Similarity=0.231 Sum_probs=92.5
Q ss_pred CCCCCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCcccccc
Q 008954 192 TNSDFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGG 271 (547)
Q Consensus 192 ~~~~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 271 (547)
.+..|+-..++.++|..++|||||+...++..+..+.++ |-.+.. ... +.+.+
T Consensus 14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvs----TvGidF-----------------KvK------Tvyr~ 66 (193)
T KOG0093|consen 14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVS----TVGIDF-----------------KVK------TVYRS 66 (193)
T ss_pred ccccccceeeEEEEccCCccchhhhHHhhccccccceee----eeeeeE-----------------EEe------Eeeec
Confidence 345666667899999999999999999999876211111 110000 000 00000
Q ss_pred chhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh--
Q 008954 272 AFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR-- 349 (547)
Q Consensus 272 ~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~-- 349 (547)
.---.+.++||.|... +..++-+....++.+|+.+|..+-..-......+.+++
T Consensus 67 -------------~kRiklQiwDTagqEr-----------yrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIkty 122 (193)
T KOG0093|consen 67 -------------DKRIKLQIWDTAGQER-----------YRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTY 122 (193)
T ss_pred -------------ccEEEEEEEecccchh-----------hhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheee
Confidence 0002688999999852 23467777899999999999876222223333444443
Q ss_pred -CCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCC
Q 008954 350 -GNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 350 -~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~ 404 (547)
..+.++|+|.||||+-+...+-...+.. +...+++ +. +..||+.+-++.
T Consensus 123 sw~naqvilvgnKCDmd~eRvis~e~g~~---l~~~LGf-ef--FEtSaK~NinVk 172 (193)
T KOG0093|consen 123 SWDNAQVILVGNKCDMDSERVISHERGRQ---LADQLGF-EF--FETSAKENINVK 172 (193)
T ss_pred eccCceEEEEecccCCccceeeeHHHHHH---HHHHhCh-HH--hhhcccccccHH
Confidence 4588999999999997543222111111 2333444 22 467787766554
No 459
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=2.9e-08 Score=100.04 Aligned_cols=158 Identities=15% Similarity=0.165 Sum_probs=91.9
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----------cccCCceee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----------RTIPGNTIA 256 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----------~~~~g~~~~ 256 (547)
.++++.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++... ....+..++
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~i~~~~~~~~~~~~~~~ig~v 90 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL--------QPTSGTVTI--GERVITAGKKNKKLKPLRKKVGIV 90 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--------CCCCcEEEE--CCEECccccccchHHHHHhhEEEE
Confidence 356666555 89999999999999999999999987 233344333 22110 001234445
Q ss_pred ecCC-CCCCCccccccchhhh-------hhhhcccccccccceE----EcC-CCCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 257 VHAD-LPFSGLTTFGGAFLSK-------FECSQMSHPLLDQVTF----VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 257 ~~~~-~~~~~l~~~~~~~~~~-------~~~~~~~~~ll~~l~l----vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
++.. ..+...+..++..... .........+++.+.+ .|+ |+.+|+ ++|++. ++++++.+
T Consensus 91 ~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~-------lAraL~~~ 163 (290)
T PRK13634 91 FQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA-------IAGVLAME 163 (290)
T ss_pred eeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH-------HHHHHHcC
Confidence 5542 1121234444432111 0111122333333333 233 455554 556544 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
++++|++ +.+.++.....+.+++..+.. .+..++++.+..+
T Consensus 164 P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 164 PEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999999 555554445566777777754 3778888766544
No 460
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.66 E-value=3.9e-08 Score=89.47 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=34.6
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEE
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVV 240 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~ 240 (547)
.+..++++|.+|+|||||+|+|++... ..++..|.||+...
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~--~~~~~~~~~t~~~~ 139 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLK--LKVGNVPGTTTSQQ 139 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccc--ccccCCCCcccceE
Confidence 457899999999999999999999886 67888777776543
No 461
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.66 E-value=4.1e-08 Score=106.72 Aligned_cols=157 Identities=20% Similarity=0.250 Sum_probs=92.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+...+++..
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~p~~G~I~~--~g~~i~~~~~~~~~~~~i~~v~q~~ 88 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY--------QPDAGSILI--DGQEMRFASTTAALAAGVAIIYQEL 88 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCCCEEEE--CCEECCCCCHHHHHhCCEEEEEech
Confidence 55665555 89999999999999999999999987 233344332 221100 012344455554
Q ss_pred CCCCCccccccchhhh----------hhhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 261 LPFSGLTTFGGAFLSK----------FECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~----------~~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
..+..++..++..... .........+++.+.+- | .|+-+|+ ++|++. ++++++.++++
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-------laral~~~p~l 161 (501)
T PRK11288 89 HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVE-------IAKALARNARV 161 (501)
T ss_pred hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHH-------HHHHHHhCCCE
Confidence 4444444444432110 00011122333344332 2 3455555 566654 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+|++ +.+.++.......+++..+.+.+..++++-+..+
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~ 201 (501)
T PRK11288 162 IAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME 201 (501)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 9999 5555544455666777777666777777766543
No 462
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.66 E-value=1.5e-07 Score=86.60 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=73.8
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCcc
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLT 267 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~ 267 (547)
.+.+.+++ +|..++|+|++|+|||||++.|+|.. .|+.+++.+ .+. .......+....+ ..+
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--------~~~~G~i~~--~~~-----~~i~~~~q~~~~~-~~t 79 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW--------PWGSGRIGM--PEG-----EDLLFLPQRPYLP-LGT 79 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCceEEE--CCC-----ceEEEECCCCccc-ccc
Confidence 45565555 89999999999999999999999987 234444433 110 1223333332211 222
Q ss_pred ccccchhhhhhhhcccccccccceEEcCCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHH
Q 008954 268 TFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRV 344 (547)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~l 344 (547)
..++ +.+. .+...|+ +++++. ++++++.+++++|++ +.+.+........++
T Consensus 80 v~~n------------------l~~~-~~~~LS~G~~~rv~-------laral~~~p~~lllDEPt~~LD~~~~~~l~~~ 133 (166)
T cd03223 80 LREQ------------------LIYP-WDDVLSGGEQQRLA-------FARLLLHKPKFVFLDEATSALDEESEDRLYQL 133 (166)
T ss_pred HHHH------------------hhcc-CCCCCCHHHHHHHH-------HHHHHHcCCCEEEEECCccccCHHHHHHHHHH
Confidence 2222 1111 2444554 556554 899999999999999 444443333344444
Q ss_pred HHHHhCCCCeEEEEecc
Q 008954 345 IASLRGNDDKIRVVLNK 361 (547)
Q Consensus 345 l~~l~~~~~~iivVlNK 361 (547)
+.. .+..++++-+.
T Consensus 134 l~~---~~~tiiivsh~ 147 (166)
T cd03223 134 LKE---LGITVISVGHR 147 (166)
T ss_pred HHH---hCCEEEEEeCC
Confidence 444 34566666554
No 463
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.3e-07 Score=95.91 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=88.1
Q ss_pred CCcEEEEeeCCCCChhHHHHHHH--hCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccchh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLL--RCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGAFL 274 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Ll--g~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~ 274 (547)
.....|||-+|-||||||...|+ |.-+..+-+-....+.++...... ......|+++.. --.++|.+
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM-~iEkqRGISVtsSVMqF~Y~~--------- 80 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWM-EIEKQRGISVTSSVMQFDYAD--------- 80 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHH-HHHHhcCceEEeeEEEeccCC---------
Confidence 34568999999999999999888 322200000000011111110000 011234555421 11234444
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK 354 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ 354 (547)
..++|+||||+.+ |.+-+...+..+|..+.|+|+.+ ++..+...+++-++-++.|
T Consensus 81 -------------~~iNLLDTPGHeD-----------FSEDTYRtLtAvDsAvMVIDaAK-GiE~qT~KLfeVcrlR~iP 135 (528)
T COG4108 81 -------------CLVNLLDTPGHED-----------FSEDTYRTLTAVDSAVMVIDAAK-GIEPQTLKLFEVCRLRDIP 135 (528)
T ss_pred -------------eEEeccCCCCccc-----------cchhHHHHHHhhheeeEEEeccc-CccHHHHHHHHHHhhcCCc
Confidence 3799999999975 33345556788999999999998 8999999999999999999
Q ss_pred EEEEeccCCCcCh
Q 008954 355 IRVVLNKADQVDT 367 (547)
Q Consensus 355 iivVlNK~D~~~~ 367 (547)
++-.+||+|....
T Consensus 136 I~TFiNKlDR~~r 148 (528)
T COG4108 136 IFTFINKLDREGR 148 (528)
T ss_pred eEEEeeccccccC
Confidence 9999999999753
No 464
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=2e-07 Score=89.91 Aligned_cols=150 Identities=23% Similarity=0.220 Sum_probs=85.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceee-ecCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIA-VHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
-.|+.+|+.+.|||||..+|.+.. +..+. .....+..+.. .-+....|+++. ....+.- ++
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~l---a~~~~-~~~~~y~~id~-aPeEk~rGITIntahveyet------~~------- 74 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVL---AKKGG-AEAKAYDQIDN-APEEKARGITINTAHVEYET------AN------- 74 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHH---Hhhcc-ccccchhhhcc-CchHhhcCceeccceeEEec------CC-------
Confidence 468999999999999999999765 22111 00001000111 111223344441 1110100 11
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IRV 357 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-iiv 357 (547)
..+..||+||+.+--++.+ .-+...|..|+|+.+.+ +..++.++.+-..++.|.| +++
T Consensus 75 ---------rhyahVDcPGHaDYvKNMI-----------tgAaqmDgAILVVsA~d-GpmPqTrEHiLlarqvGvp~ivv 133 (394)
T COG0050 75 ---------RHYAHVDCPGHADYVKNMI-----------TGAAQMDGAILVVAATD-GPMPQTREHILLARQVGVPYIVV 133 (394)
T ss_pred ---------ceEEeccCCChHHHHHHHh-----------hhHHhcCccEEEEEcCC-CCCCcchhhhhhhhhcCCcEEEE
Confidence 4788999999975333322 12457799999988887 4445555555555566774 788
Q ss_pred EeccCCCcChHHHHHHHHHHHHhhhhccCCC
Q 008954 358 VLNKADQVDTQQLMRVYGALMWSLGKVLNTP 388 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~ 388 (547)
++||+|+++.+++.+..+.-...|-....++
T Consensus 134 flnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 134 FLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred EEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999987666554443333333334444
No 465
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=5.6e-08 Score=95.98 Aligned_cols=159 Identities=16% Similarity=0.216 Sum_probs=89.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc--------cccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE--------RTIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~--------~~~~g~~~~~~~ 259 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .+....|..+.+.+ ++... ....+...+++.
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~~~~~~G~i~~--~g~~i~~~~~~~~~~~~~i~~~~q~ 93 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL---ELNEEARVEGEVRL--FGRNIYSPDVDPIEVRREVGMVFQY 93 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CcccCCCCceEEEE--CCEEccccccChHHHhhceeEEecC
Confidence 56666655 89999999999999999999999986 22111123444333 22110 001234445555
Q ss_pred CCCCCCccccccchhhh-hh--------hhcccccccccceE-------Ec-CCCCCCh-hhhhhhcccChHHHHHHHhh
Q 008954 260 DLPFSGLTTFGGAFLSK-FE--------CSQMSHPLLDQVTF-------VD-TPGVLSG-EKQRTQRTYDFTGVISWFAA 321 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~-~~--------~~~~~~~ll~~l~l-------vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (547)
...+..++..++..... .. .......+++.+.+ .| .++-+|+ ++|++. ++++++.
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~-------laral~~ 166 (253)
T PRK14267 94 PNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV-------IARALAM 166 (253)
T ss_pred CccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH-------HHHHHhc
Confidence 55555555555442211 00 00011222222222 23 2344454 555544 8999999
Q ss_pred cCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 322 KCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 322 ~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+++++|++ +.+.+........+++..+.. +..++++-+.
T Consensus 167 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~ 207 (253)
T PRK14267 167 KPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHS 207 (253)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECC
Confidence 99999999 445554444566677777654 4566666554
No 466
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.65 E-value=8.7e-08 Score=95.41 Aligned_cols=158 Identities=21% Similarity=0.283 Sum_probs=88.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc--------ccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER--------TIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~--------~~~g~~~~~~~ 259 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|... +..+.|.++.+.+ ++.... ...+...+++.
T Consensus 34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~--~g~~i~~~~~~~~~~~~~i~~v~q~ 108 (267)
T PRK14235 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITL--DGEDIYDPRLDVVELRARVGMVFQK 108 (267)
T ss_pred EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEE--CCEECcccccchHHHhhceEEEecC
Confidence 45555544 899999999999999999999999762 1111234454443 221110 01233445554
Q ss_pred CCCCCCccccccchhhh-h--------hhhcccccccccceE-------EcC-CCCCCh-hhhhhhcccChHHHHHHHhh
Q 008954 260 DLPFSGLTTFGGAFLSK-F--------ECSQMSHPLLDQVTF-------VDT-PGVLSG-EKQRTQRTYDFTGVISWFAA 321 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~-~--------~~~~~~~~ll~~l~l-------vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (547)
...+.. +..++..... . ........+++.+.+ .|. ++-+|+ ++|++. ++++++.
T Consensus 109 ~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~-------laral~~ 180 (267)
T PRK14235 109 PNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC-------IARAIAV 180 (267)
T ss_pred CCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH-------HHHHHHc
Confidence 433432 4444432110 0 000111223333333 232 344554 566554 8999999
Q ss_pred cCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 322 KCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 322 ~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+++++|++ +.+.+......+.++++.+.. +..++++-+.
T Consensus 181 ~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~ 221 (267)
T PRK14235 181 SPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHS 221 (267)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcC
Confidence 99999999 555554445566777777755 5566666554
No 467
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.65 E-value=4.8e-08 Score=94.32 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=82.8
Q ss_pred ccCCCCC--CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc------ccCCceeeecCCC
Q 008954 190 FLTNSDF--DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER------TIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~--~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~------~~~g~~~~~~~~~ 261 (547)
.+.+.++ ..|..++|+|++|+|||||++.|+|... |..+.+.+ .+.... ...+...+.+...
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--------~~~G~i~~--~g~~~~~~~~~~~~~~i~~~~q~~~ 88 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--------PTSGSVLL--DGTDIRQLDPADLRRNIGYVPQDVT 88 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--------CCCCeEEE--CCEEhHHCCHHHHHhhEEEeCCCCc
Confidence 5566555 4899999999999999999999999872 23333322 111100 0112333444433
Q ss_pred CCCCccccccchhh-hhhhhcccccccccce---------------EEcCCCCCCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 262 PFSGLTTFGGAFLS-KFECSQMSHPLLDQVT---------------FVDTPGVLSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 262 ~~~~l~~~~~~~~~-~~~~~~~~~~ll~~l~---------------lvDTPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
.+. .+...+.... ..........++..+. +.+.++-.|+ +++++. ++++++.+++
T Consensus 89 ~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~-------la~al~~~p~ 160 (220)
T cd03245 89 LFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVA-------LARALLNDPP 160 (220)
T ss_pred ccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHH-------HHHHHhcCCC
Confidence 222 2222222110 0000000001111111 1122344554 556554 8999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++|++ +.+.+......+.+++..+... ..++++-+..+
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~ 200 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS 200 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH
Confidence 99999 5555544556667777776553 56666655443
No 468
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.65 E-value=3.2e-08 Score=110.16 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=96.2
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeC--------CCc---ccc--CCc
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSG--------PDE---RTI--PGN 253 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~--------~~~---~~~--~g~ 253 (547)
.++.+.+|. .|.+++|+|++|+|||||+++|+|.. .+.+.....+...+...+ ... ... ..+
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll---~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~i 106 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL---EQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADM 106 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC---CCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCE
Confidence 466776665 89999999999999999999999987 222221111111110000 000 011 234
Q ss_pred eeeecCC--CCCCCccccccchhh--------hhhhhcccccccccceE------Ec-CCCCCCh-hhhhhhcccChHHH
Q 008954 254 TIAVHAD--LPFSGLTTFGGAFLS--------KFECSQMSHPLLDQVTF------VD-TPGVLSG-EKQRTQRTYDFTGV 315 (547)
Q Consensus 254 ~~~~~~~--~~~~~l~~~~~~~~~--------~~~~~~~~~~ll~~l~l------vD-TPG~~~~-~~~~~~~~~~~~~~ 315 (547)
+++++.. ..+..++..++.... +.+......++++.+.+ .| .|+-+|+ ++|++. +
T Consensus 107 g~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~-------i 179 (623)
T PRK10261 107 AMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVM-------I 179 (623)
T ss_pred EEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHH-------H
Confidence 5556653 223344444443211 11111223344555555 23 4566665 667655 8
Q ss_pred HHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 316 ISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 316 ~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
+++++.+++++|++ +.+.++....+..++++.+.. .+..+++|-+..+
T Consensus 180 A~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~ 230 (623)
T PRK10261 180 AMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG 230 (623)
T ss_pred HHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 99999999999999 555554555667788888764 3777887777654
No 469
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.65 E-value=6.6e-08 Score=95.76 Aligned_cols=160 Identities=17% Similarity=0.249 Sum_probs=89.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc--------cccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE--------RTIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~--------~~~~g~~~~~~~ 259 (547)
.+.+.++. +|..++|+|++|+|||||++.|+|... +....|+.+.+.+ .+... ....+...+++.
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~--~g~~~~~~~~~~~~~~~~i~~~~q~ 93 (258)
T PRK14241 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLL--DGEDLYGPGVDPVAVRRTIGMVFQR 93 (258)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEE--CCEeccccccChHHHhcceEEEccc
Confidence 55665554 899999999999999999999999762 1101134454443 22110 011234445555
Q ss_pred CCCCCCccccccchhhh-h-------hhhcccccccccceE-------EcC-CCCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 260 DLPFSGLTTFGGAFLSK-F-------ECSQMSHPLLDQVTF-------VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~-~-------~~~~~~~~ll~~l~l-------vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
...+...+..++..... . ........++..+.+ .+. ++-+|+ +++++. ++++++.+
T Consensus 94 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~-------laral~~~ 166 (258)
T PRK14241 94 PNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLC-------IARAIAVE 166 (258)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH-------HHHHHhcC
Confidence 44444455555432110 0 001112223333322 232 344554 556544 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
++++|++ +.+.+........+++..+.. +..++++-+..
T Consensus 167 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~ 207 (258)
T PRK14241 167 PDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM 207 (258)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 9999999 555554444566677777754 46666665543
No 470
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.65 E-value=4.7e-08 Score=106.27 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=94.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc-------cCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT-------IPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~-------~~g~~~~~~~~ 260 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|... + .|+.+.+.+ ++..... ..+...+++..
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~---~~~~G~i~~--~g~~~~~~~~~~~~~~~i~~v~q~~ 87 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---H---GTWDGEIYW--SGSPLKASNIRDTERAGIVIIHQEL 87 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---C---CCCCeEEEE--CCEECCCCCHHHHHhCCEEEEeecc
Confidence 56666555 899999999999999999999999762 1 123444332 2211110 12344555554
Q ss_pred CCCCCccccccchhhh--------h---hhhcccccccccceE----EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 261 LPFSGLTTFGGAFLSK--------F---ECSQMSHPLLDQVTF----VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~--------~---~~~~~~~~ll~~l~l----vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
..+..++...+..... . ........+++.+.+ .+. ++-+|+ ++|++. ++++++.++
T Consensus 88 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~-------iA~al~~~p 160 (500)
T TIGR02633 88 TLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE-------IAKALNKQA 160 (500)
T ss_pred ccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH-------HHHHHhhCC
Confidence 4444455444432110 0 001112233434333 133 555665 666655 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+++|++ +.+.++.......++++.+...+..++++-+..+
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~ 202 (500)
T TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN 202 (500)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 999999 5555555556677778777666677777766544
No 471
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=4.6e-08 Score=98.18 Aligned_cols=160 Identities=19% Similarity=0.235 Sum_probs=88.8
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCC-
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHAD- 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~- 260 (547)
.+.+.+++ .|..++|+|++|+|||||++.|+|... +.+.. ++.+.+ ++..... ...+..+++..
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~--~G~i~i--~g~~~~~~~~~~~~~~ig~v~q~~~ 94 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNP--NSKITV--DGITLTAKTVWDIREKVGIVFQNPD 94 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCC--CcEEEE--CCEECCcCCHHHHHhheEEEEECHH
Confidence 55565554 899999999999999999999999872 22100 123222 2211110 12233444442
Q ss_pred CCCCCccccccchhh-hh------hhhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEE
Q 008954 261 LPFSGLTTFGGAFLS-KF------ECSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILL 328 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~-~~------~~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ill 328 (547)
..+...+..++.... .. +.......++..+.+- + .|..+|+ +++++. ++++++.+++++|+
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~-------laral~~~P~llll 167 (282)
T PRK13640 95 NQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVA-------IAGILAVEPKIIIL 167 (282)
T ss_pred HhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHH-------HHHHHHcCCCEEEE
Confidence 123333444443211 00 0001122233333332 2 3445554 555544 89999999999999
Q ss_pred E--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 329 L--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 329 v--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
+ +.+.+........+++..+... +..++++-+..+
T Consensus 168 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 168 DESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 9 5555544455666777777543 677777766544
No 472
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.65 E-value=4.3e-08 Score=94.70 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=79.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc------cccCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE------RTIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~------~~~~g~~~~~~~~~ 261 (547)
.+.+.+|. .|..++|+|++|+|||||++.|+|.. . |+.+.+.+ ++... ....+....++...
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~-----~~~G~i~~--~g~~~~~~~~~~~~~~i~~~~q~~~ 88 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV---E-----LSSGSILI--DGVDISKIGLHDLRSRISIIPQDPV 88 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC---C-----CCCCEEEE--CCEEhHhCCHHHHhhhEEEECCCCc
Confidence 55665554 89999999999999999999999987 2 33333322 22110 00112333333332
Q ss_pred CCCCccccccchh-hhhhhhcccccccccce---------------EEcCCCCCCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 262 PFSGLTTFGGAFL-SKFECSQMSHPLLDQVT---------------FVDTPGVLSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 262 ~~~~l~~~~~~~~-~~~~~~~~~~~ll~~l~---------------lvDTPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
.+.. +...+... .... .......++.+. +-..+.-.|+ +++++. ++++++.+++
T Consensus 89 l~~~-tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~-------laral~~~p~ 159 (221)
T cd03244 89 LFSG-TIRSNLDPFGEYS-DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLC-------LARALLRKSK 159 (221)
T ss_pred cccc-hHHHHhCcCCCCC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHH-------HHHHHhcCCC
Confidence 2221 22222110 0000 000000001111 1123344443 555544 8999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
++|++ +.+.+......+.++++.+.. +..++++-+.
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 197 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHR 197 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCC
Confidence 99999 555554444556677776654 4566666554
No 473
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.65 E-value=6.4e-08 Score=96.63 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=84.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-c--cCCceeeecCCCC-C
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-T--IPGNTIAVHADLP-F 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-~--~~g~~~~~~~~~~-~ 263 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|... |+++.+.+ ++.... . ......+++.... +
T Consensus 22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--------p~~G~i~~--~g~~i~~~~~~~~i~~v~q~~~~~~ 91 (272)
T PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--------LASGKISI--LGQPTRQALQKNLVAYVPQSEEVDW 91 (272)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCceEEEE--CCEEhHHhhccceEEEecccccccc
Confidence 45565554 899999999999999999999999872 33333322 111100 0 0112223222110 0
Q ss_pred -CCccccccchhh-----------hhhhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 264 -SGLTTFGGAFLS-----------KFECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 264 -~~l~~~~~~~~~-----------~~~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
......++.... ..........++..+.+ .|+ ++-+|+ +++++. ++++++.+++++
T Consensus 92 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~-------laraL~~~p~ll 164 (272)
T PRK15056 92 SFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVF-------LARAIAQQGQVI 164 (272)
T ss_pred CCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH-------HHHHHhcCCCEE
Confidence 000111111000 00000111122222222 233 455554 556544 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
|++ +.+.++.....+.+++..++..+..++++-+..|
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 999 5555544456667778777666677777766543
No 474
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=1.4e-07 Score=88.24 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=87.2
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCC---CCCCC--CCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYP---GAHIG--PEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFL 274 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~---~~~v~--~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 274 (547)
..|.++|++|.|||||+|.|....+- +...+ +.|.|+....+.|.-.+ .++
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE----------------~gV-------- 102 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEE----------------KGV-------- 102 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeee----------------cce--------
Confidence 34999999999999999999976651 01122 33445554443332211 011
Q ss_pred hhhhhhcccccccccceEEcCCCCCChh-----hhhhhc----cc-ChH--H--HHHH-Hh--hcCCeEEEEecCCCCCC
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGE-----KQRTQR----TY-DFT--G--VISW-FA--AKCDLILLLFDPHKLDI 337 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~-----~~~~~~----~~-~~~--~--~~~~-~~--~~aD~illv~d~~~~~~ 337 (547)
--+++++||||+.+.- -+.+.+ .| .|. + +++. .+ .+.+.+++.+.++...+
T Consensus 103 ------------klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsL 170 (336)
T KOG1547|consen 103 ------------KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSL 170 (336)
T ss_pred ------------EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCcc
Confidence 0268999999998730 000000 00 000 0 1111 12 35678888888876667
Q ss_pred CHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHH
Q 008954 338 SDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMW 379 (547)
Q Consensus 338 ~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~ 379 (547)
..-+.++++.|.+- ..++-|+-|+|.+.-++.....+.+..
T Consensus 171 rplDieflkrLt~v-vNvvPVIakaDtlTleEr~~FkqrI~~ 211 (336)
T KOG1547|consen 171 RPLDIEFLKRLTEV-VNVVPVIAKADTLTLEERSAFKQRIRK 211 (336)
T ss_pred CcccHHHHHHHhhh-heeeeeEeecccccHHHHHHHHHHHHH
Confidence 77788899888764 678999999999987666555555543
No 475
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.64 E-value=6.1e-08 Score=95.50 Aligned_cols=151 Identities=20% Similarity=0.194 Sum_probs=81.8
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCc-
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGL- 266 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l- 266 (547)
.+.+.+|. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ .+. ......++....+..+
T Consensus 19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~--------~p~~G~i~~--~~~-----~~i~~v~q~~~~~~~l~ 83 (251)
T PRK09544 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV--------APDEGVIKR--NGK-----LRIGYVPQKLYLDTTLP 83 (251)
T ss_pred EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCc-----cCEEEeccccccccccC
Confidence 45555444 89999999999999999999999987 233343332 110 1122233332111111
Q ss_pred -cccccchhh-hhhhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCC
Q 008954 267 -TTFGGAFLS-KFECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDI 337 (547)
Q Consensus 267 -~~~~~~~~~-~~~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~ 337 (547)
+...+.... ... ......+++.+.+ .|. ++-.|+ +++++. ++++++.+++++|++ +.+.+...
T Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~-------laral~~~p~lllLDEPt~~LD~~~ 155 (251)
T PRK09544 84 LTVNRFLRLRPGTK-KEDILPALKRVQAGHLIDAPMQKLSGGETQRVL-------LARALLNRPQLLVLDEPTQGVDVNG 155 (251)
T ss_pred hhHHHHHhcccccc-HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 111110000 000 0001122223322 333 444554 555544 899999999999999 55555444
Q ss_pred CHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 338 SDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 338 ~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
...+.+++..+... +..++++-+..+
T Consensus 156 ~~~l~~~L~~~~~~~g~tiiivsH~~~ 182 (251)
T PRK09544 156 QVALYDLIDQLRRELDCAVLMVSHDLH 182 (251)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 45566677666543 677777766544
No 476
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.64 E-value=5.4e-08 Score=92.82 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=29.8
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCN 223 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~ 223 (547)
.+++.++. .|..++|+|++|+|||||++.|+|..
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 56666544 99999999999999999999999987
No 477
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=7.1e-08 Score=96.48 Aligned_cols=159 Identities=19% Similarity=0.268 Sum_probs=88.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-------cccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-------RTIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-------~~~~g~~~~~~~~ 260 (547)
.+.+.+|. .|.+++|+|++|+|||||++.|+|.. .+.++.|.++.+.+ .+... ....+...+++..
T Consensus 36 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~---~p~~~~~~~G~i~~--~g~~i~~~~~~~~~~~~i~~v~q~~ 110 (276)
T PRK14271 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMN---DKVSGYRYSGDVLL--GGRSIFNYRDVLEFRRRVGMLFQRP 110 (276)
T ss_pred EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccC---CcCCCCCCceEEEE--CCEEccccchhHHHhhheEEeccCC
Confidence 45555554 89999999999999999999999987 44333355555443 22111 0112344455554
Q ss_pred CCCCCccccccchhhh-h-------hhhcccccccccceE-------EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 261 LPFSGLTTFGGAFLSK-F-------ECSQMSHPLLDQVTF-------VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~-~-------~~~~~~~~ll~~l~l-------vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
..+. .+..++..... . ........++..+.+ .+. ++-+|+ +++++. ++++++.++
T Consensus 111 ~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~-------LAral~~~p 182 (276)
T PRK14271 111 NPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC-------LARTLAVNP 182 (276)
T ss_pred ccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH-------HHHHHhcCC
Confidence 4443 34444332110 0 000001112222222 222 344554 555544 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
+++|++ +.+.+......+.+++..+.. +..++++.+..
T Consensus 183 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~ 222 (276)
T PRK14271 183 EVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL 222 (276)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 999999 555553334555667777655 46677766643
No 478
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=4.3e-08 Score=98.33 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=86.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----------ccCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----------TIPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----------~~~g~~~~~ 257 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... .......++
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--------~p~~G~i~~--~g~~i~~~~~~~~~~~~~~~i~~~~ 91 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH--------VPTQGSVRV--DDTLITSTSKNKDIKQIRKKVGLVF 91 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEEccccccccCHHHHHhheEEEe
Confidence 55665554 89999999999999999999999987 234444333 221100 011233444
Q ss_pred cCC--CCCCCccccccchhhh-------hhhhcccccccccceE----EcC-CCCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 258 HAD--LPFSGLTTFGGAFLSK-------FECSQMSHPLLDQVTF----VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 258 ~~~--~~~~~l~~~~~~~~~~-------~~~~~~~~~ll~~l~l----vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
+.. ..+. .+..++..... .........+++.+.+ .|. ++-+|+ ++|++. ++++++.+
T Consensus 92 q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~-------la~al~~~ 163 (280)
T PRK13649 92 QFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVA-------IAGILAME 163 (280)
T ss_pred eChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH-------HHHHHHcC
Confidence 442 1222 23334332110 0000111222333222 233 344554 556554 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
++++|++ +.+.++.....+.+++..+.+.+..++++-+..
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 205 (280)
T PRK13649 164 PKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence 9999999 555554444556677777665567777776653
No 479
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=7e-08 Score=98.72 Aligned_cols=160 Identities=18% Similarity=0.267 Sum_probs=91.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------c-cCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------T-IPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~-~~g~~~~~~~ 259 (547)
.+++.++. .|..++|+|++|+|||||+++|+|.. ....+.|..+.+.+ +|.+.. . ..+.+.+++.
T Consensus 97 ~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~---~~~~~~p~~G~I~i--dG~~i~~~~~~~~~lr~~i~~v~q~ 171 (329)
T PRK14257 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN---DLIEGTSHEGEIYF--LGTNTRSKKISSLELRTRIGMVFQK 171 (329)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc---cccCCCCCceEEEE--CCEEccccccchHhhhccEEEEecC
Confidence 45555444 89999999999999999999999986 33333344555443 222111 1 2234556666
Q ss_pred CCCCCCccccccchhhh-hhh---h----cccccccccce-------EEcCC-CCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 260 DLPFSGLTTFGGAFLSK-FEC---S----QMSHPLLDQVT-------FVDTP-GVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~-~~~---~----~~~~~ll~~l~-------lvDTP-G~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
...+. .+..+|..... +.. . ......++.+. .++.. +-+|+ ++|++. ++++++.+
T Consensus 172 ~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~-------LARAl~~~ 243 (329)
T PRK14257 172 PTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC-------IARAIALE 243 (329)
T ss_pred CccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH-------HHHHHHhC
Confidence 55553 34444432111 000 0 00111122222 23333 33443 566654 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++++|++ +.+.+......+.+++..+.+ +..+++|.+..+
T Consensus 244 p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~ 285 (329)
T PRK14257 244 PEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA 285 (329)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 9999999 555554444556677777665 467777766644
No 480
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.64 E-value=6.1e-08 Score=105.40 Aligned_cols=157 Identities=16% Similarity=0.173 Sum_probs=93.6
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------ccCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------TIPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~~~g~~~~~~~~ 260 (547)
.+.+.++. .|.+++|+|+||+|||||++.|+|.. .|.++.+.+ .+.... ...+.....+..
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~i~~~~q~~ 337 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT--------RRTAGQVYL--DGKPIDIRSPRDAIRAGIMLCPEDR 337 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC--------cCCCceEEE--CCEECCCCCHHHHHhCCCEEcCcCH
Confidence 44555544 89999999999999999999999987 234444332 221110 012233333432
Q ss_pred ---CCCCCccccccchhh-------------hhhhhcccccccccceE----Ec-CCCCCCh-hhhhhhcccChHHHHHH
Q 008954 261 ---LPFSGLTTFGGAFLS-------------KFECSQMSHPLLDQVTF----VD-TPGVLSG-EKQRTQRTYDFTGVISW 318 (547)
Q Consensus 261 ---~~~~~l~~~~~~~~~-------------~~~~~~~~~~ll~~l~l----vD-TPG~~~~-~~~~~~~~~~~~~~~~~ 318 (547)
..+...+..++.... ..........++..+.+ .| .|+-+|+ ++|++. ++++
T Consensus 338 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~-------la~a 410 (501)
T PRK11288 338 KAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAI-------LGRW 410 (501)
T ss_pred hhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHH-------HHHH
Confidence 133334444432110 00001122344444444 23 3567776 666655 8999
Q ss_pred HhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 319 FAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 319 ~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++.+++++|++ +.+.++.......+++..+.+.+..+++|-+..+
T Consensus 411 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 457 (501)
T PRK11288 411 LSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP 457 (501)
T ss_pred HccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 99999999999 6666655566777788888777788888766543
No 481
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1e-07 Score=94.38 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=91.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc------ccCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER------TIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~------~~~g~~~~~~~~~ 261 (547)
.+.+.+|. +|..++|+|++|+|||||++.|+|.. .+.+....+..... ..+.... ...+.+.+++...
T Consensus 25 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~---~~~~G~v~~~G~~~-~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI---EIYDSKIKVDGKVL-YFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCcCceeEcCEEE-ECCcccccCCHHHHhcceEEEccCCc
Confidence 56666655 89999999999999999999999987 33322211111111 1111110 1223445555555
Q ss_pred CCCCccccccchhhhh--------hhhcccccccccceE-------Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 262 PFSGLTTFGGAFLSKF--------ECSQMSHPLLDQVTF-------VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~--------~~~~~~~~ll~~l~l-------vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
.+.+++..++...... .........++.+.+ .| .|+..|+ +++++. ++++++.+++
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~-------laral~~~P~ 173 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLT-------IARALALKPK 173 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHH-------HHHHHHcCCC
Confidence 5555555554432110 000111222222222 22 3344454 555544 8999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++|++ +.+.+........+++..+.. +..++++.+..+
T Consensus 174 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~ 213 (257)
T PRK14246 174 VLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ 213 (257)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH
Confidence 99999 555554445566777777754 577777777644
No 482
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.63 E-value=6.5e-08 Score=94.56 Aligned_cols=156 Identities=21% Similarity=0.297 Sum_probs=87.6
Q ss_pred ccCCCC--CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----cccCCceeeecCCCCC
Q 008954 190 FLTNSD--FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----RTIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~--~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----~~~~g~~~~~~~~~~~ 263 (547)
.+.+.+ +.+|.+++|+|++|+|||||++.|+|.. .|+.+++.+ ++... ....+...+.+....+
T Consensus 15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--------~~~~G~i~i--~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (237)
T TIGR00968 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE--------QPDSGRIRL--NGQDATRVHARDRKIGFVFQHYALF 84 (237)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCceEEEE--CCEEcCcCChhhcCEEEEecChhhc
Confidence 455555 4489999999999999999999999976 233444332 11111 1112344455554445
Q ss_pred CCccccccchhhh-h------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLSK-F------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~~-~------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
.+++..++..... . ........++..+.+ .|. ++-.|+ +++++. ++++++.+++++|++
T Consensus 85 ~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~-------laral~~~p~llllDEP 157 (237)
T TIGR00968 85 KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVA-------LARALAVEPQVLLLDEP 157 (237)
T ss_pred cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEcCC
Confidence 4545444432111 0 000111223333332 232 344444 555544 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccC
Q 008954 330 FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKA 362 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~ 362 (547)
+.+.+....+.+.+++..+... +..++++-+..
T Consensus 158 ~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 158 FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4444434445566677766554 56677765543
No 483
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=9.1e-08 Score=94.42 Aligned_cols=159 Identities=16% Similarity=0.248 Sum_probs=88.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc--------cccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE--------RTIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~--------~~~~g~~~~~~~ 259 (547)
.+.+.+++ +|..++|+|++|+|||||++.|+|...+ .+. .|+.+.+.+ ++... ....+...+++.
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~--~~~~G~v~~--~g~~i~~~~~~~~~~~~~i~~~~q~ 93 (252)
T PRK14256 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDL-VPS--ARVTGKILL--DDTDIYDRGVDPVSIRRRVGMVFQK 93 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccC-CCC--CCCceEEEE--CCEEcccccCChHHhhccEEEEecC
Confidence 56665554 8999999999999999999999997510 011 122343332 22111 011234445565
Q ss_pred CCCCCCccccccchhhh--------hhhhcccccccccceE-------Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 260 DLPFSGLTTFGGAFLSK--------FECSQMSHPLLDQVTF-------VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~--------~~~~~~~~~ll~~l~l-------vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
...+...+..++..... .........+++.+.+ .+ .++-.|+ +++++. ++++++.+
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~-------laral~~~ 166 (252)
T PRK14256 94 PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLC-------IARTIAVK 166 (252)
T ss_pred CCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHH-------HHHHHhcC
Confidence 54555445444432110 0000111222222222 22 2444554 556544 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
++++|++ +.+.+........++++.+.. +..++++.+.
T Consensus 167 p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~ 206 (252)
T PRK14256 167 PEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHN 206 (252)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECC
Confidence 9999999 555554445566777777765 4566666554
No 484
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=5.7e-08 Score=97.27 Aligned_cols=158 Identities=21% Similarity=0.206 Sum_probs=90.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc------cccCCceeeecCC-
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE------RTIPGNTIAVHAD- 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~------~~~~g~~~~~~~~- 260 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ .|... ....+..++++..
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~--------~~~~G~i~~--~g~~i~~~~~~~~~~~i~~v~q~~~ 91 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF--------EEFEGKVKI--DGELLTAENVWNLRRKIGMVFQNPD 91 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--------CCCCCEEEE--CCEECCcCCHHHHhcceEEEEECHH
Confidence 56666554 89999999999999999999999988 244444433 22110 0122344455543
Q ss_pred CCCCCccccccchhhhh-------hhhcccccccccce---EEcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEE
Q 008954 261 LPFSGLTTFGGAFLSKF-------ECSQMSHPLLDQVT---FVDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILL 328 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~-------~~~~~~~~ll~~l~---lvDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ill 328 (547)
..+...+..++...... ........+++.+. +.++ |+-+|+ +++++. ++++++.+++++|+
T Consensus 92 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~-------lAraL~~~p~llll 164 (277)
T PRK13642 92 NQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVA-------VAGIIALRPEIIIL 164 (277)
T ss_pred HhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHH-------HHHHHHcCCCEEEE
Confidence 12333444444321100 00011122223222 2333 444554 555544 89999999999999
Q ss_pred E--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCCC
Q 008954 329 L--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKADQ 364 (547)
Q Consensus 329 v--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D~ 364 (547)
+ +.+.+......+.+++..+.+. +..++++-+..+.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 165 DESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9 5555544445666777777653 7778887666543
No 485
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.63 E-value=1.3e-07 Score=84.89 Aligned_cols=109 Identities=17% Similarity=0.286 Sum_probs=68.0
Q ss_pred ccCCCCC--CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCcc
Q 008954 190 FLTNSDF--DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLT 267 (547)
Q Consensus 190 ~~~~~~~--~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~ 267 (547)
.+.+.++ .+|..++|+|++|+|||||+++|+|.. .|+++.+.+ ++.
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~--------~~~~G~i~~--~~~---------------------- 62 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL--------EPDEGIVTW--GST---------------------- 62 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--------CCCceEEEE--CCe----------------------
Confidence 4445444 489999999999999999999999987 344454433 110
Q ss_pred ccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHH
Q 008954 268 TFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVI 345 (547)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll 345 (547)
..+.++.. +..++++++. ++++++.+++++|++ +.+.+........+++
T Consensus 63 --------------------~~i~~~~~--lS~G~~~rv~-------laral~~~p~illlDEP~~~LD~~~~~~l~~~l 113 (144)
T cd03221 63 --------------------VKIGYFEQ--LSGGEKMRLA-------LAKLLLENPNLLLLDEPTNHLDLESIEALEEAL 113 (144)
T ss_pred --------------------EEEEEEcc--CCHHHHHHHH-------HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 01112111 4445666654 899999999999999 4444433333444444
Q ss_pred HHHhCCCCeEEEEeccC
Q 008954 346 ASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 346 ~~l~~~~~~iivVlNK~ 362 (547)
+.+ +..++++-+..
T Consensus 114 ~~~---~~til~~th~~ 127 (144)
T cd03221 114 KEY---PGTVILVSHDR 127 (144)
T ss_pred HHc---CCEEEEEECCH
Confidence 443 45666665543
No 486
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=4.3e-07 Score=89.23 Aligned_cols=163 Identities=23% Similarity=0.211 Sum_probs=87.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..++++|+-.+|||||-++|...--. +.....|+.+. .|+++. .-|++++....
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~ST-aAFDk~pqS~e-------------RgiTLD----LGFS~~~v~~p-------- 61 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGST-AAFDKHPQSTE-------------RGITLD----LGFSTMTVLSP-------- 61 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccc-hhhccCCcccc-------------cceeEe----ecceeeecccc--------
Confidence 56999999999999999999854311 22223333221 222321 11222211111
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
..+|.----++++||+||+.+--+ .....+.--|+.++++|..+ +...+..+.+-.-...-.+.++|+
T Consensus 62 arLpq~e~lq~tlvDCPGHasLIR-----------tiiggaqiiDlm~lviDv~k-G~QtQtAEcLiig~~~c~klvvvi 129 (522)
T KOG0461|consen 62 ARLPQGEQLQFTLVDCPGHASLIR-----------TIIGGAQIIDLMILVIDVQK-GKQTQTAECLIIGELLCKKLVVVI 129 (522)
T ss_pred cccCccccceeEEEeCCCcHHHHH-----------HHHhhhheeeeeeEEEehhc-ccccccchhhhhhhhhccceEEEE
Confidence 111111112789999999975211 11122456689999999987 444444443321112246789999
Q ss_pred ccCCCcChHHH----HHHHHHHHHhhhhccCCCCcEEEEecccCC
Q 008954 360 NKADQVDTQQL----MRVYGALMWSLGKVLNTPEVVRVYIGSFND 400 (547)
Q Consensus 360 NK~D~~~~~~l----~~~~~~l~~~l~~~~~~~~v~~v~isa~~~ 400 (547)
||+|.....+. .+....+...|...--....+.+.+|+..|
T Consensus 130 nkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G 174 (522)
T KOG0461|consen 130 NKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADG 174 (522)
T ss_pred eccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCC
Confidence 99999865333 222222222232221123366689999887
No 487
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=7.9e-08 Score=98.60 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=94.1
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc----------cCCceee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT----------IPGNTIA 256 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~----------~~g~~~~ 256 (547)
.++.+.+|+ .|..++|+|++|+|||||+++|+|... +. ..|+.+.+.+ ++.+... ..++.++
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~---~~-~~~~~G~i~~--~g~~i~~~~~~~~~~~~~~~i~~v 94 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK---DN-WRVTADRMRF--DDIDLLRLSPRERRKLVGHNVSMI 94 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCC---CC-CCCcceEEEE--CCEECCcCCHHHHHHHhCCCEEEE
Confidence 356676655 899999999999999999999999872 11 1233444332 3321110 1234556
Q ss_pred ecCCCC-C-CCccccccchh--hh-----------hhhhcccccccccceEEc-------CCCCCCh-hhhhhhcccChH
Q 008954 257 VHADLP-F-SGLTTFGGAFL--SK-----------FECSQMSHPLLDQVTFVD-------TPGVLSG-EKQRTQRTYDFT 313 (547)
Q Consensus 257 ~~~~~~-~-~~l~~~~~~~~--~~-----------~~~~~~~~~ll~~l~lvD-------TPG~~~~-~~~~~~~~~~~~ 313 (547)
+|.... + ...+...+... .. ........++++.+.+-+ .|.-+|+ ++|++.
T Consensus 95 ~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~------ 168 (330)
T PRK15093 95 FQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVM------ 168 (330)
T ss_pred ecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH------
Confidence 655321 1 12222222110 00 001112234455555532 4555665 566654
Q ss_pred HHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 314 GVISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 314 ~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
++++++.+++++|++ +.+.+.....++.++++.+.+ .+..+++|-+..
T Consensus 169 -iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl 219 (330)
T PRK15093 169 -IAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL 219 (330)
T ss_pred -HHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 899999999999999 556554555677788888765 477788776653
No 488
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=9e-08 Score=100.89 Aligned_cols=131 Identities=24% Similarity=0.265 Sum_probs=82.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccc--eeEEEEeCCCccccCCceeeecCC-CCCCCccccccchhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTD--RFVVVMSGPDERTIPGNTIAVHAD-LPFSGLTTFGGAFLSK 276 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~--~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~~~~ 276 (547)
..|+++|+-.+|||+|+..|.++..|. ...++.. |++-...- ....|.++...+. ....+... .
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~---~~~~~e~~lrytD~l~~---E~eRg~sIK~~p~Tl~l~D~~~--K----- 195 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPD---FSKNTEADLRYTDTLFY---EQERGCSIKSTPVTLVLSDSKG--K----- 195 (971)
T ss_pred EEEEEeeccccChhHHHHhhceecccc---ccccccccccccccchh---hHhcCceEeecceEEEEecCcC--c-----
Confidence 569999999999999999999988521 1111111 11111000 1122322211110 00001000 0
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
-..++++||||+.+ |...+.+.+.-+|.+++++|+.. +..-...++++...++..++.
T Consensus 196 ----------S~l~nilDTPGHVn-----------F~DE~ta~l~~sDgvVlvvDv~E-GVmlntEr~ikhaiq~~~~i~ 253 (971)
T KOG0468|consen 196 ----------SYLMNILDTPGHVN-----------FSDETTASLRLSDGVVLVVDVAE-GVMLNTERIIKHAIQNRLPIV 253 (971)
T ss_pred ----------eeeeeeecCCCccc-----------chHHHHHHhhhcceEEEEEEccc-CceeeHHHHHHHHHhccCcEE
Confidence 02589999999975 33445556789999999999987 666666788888888889999
Q ss_pred EEeccCCCc
Q 008954 357 VVLNKADQV 365 (547)
Q Consensus 357 vVlNK~D~~ 365 (547)
+|+||+|.+
T Consensus 254 vviNKiDRL 262 (971)
T KOG0468|consen 254 VVINKVDRL 262 (971)
T ss_pred EEEehhHHH
Confidence 999999986
No 489
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.62 E-value=5.9e-08 Score=93.72 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=87.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---------ccCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---------TIPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---------~~~g~~~~~~ 258 (547)
.+.+.+|. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+...+++
T Consensus 20 il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~~i~~~~q 89 (220)
T TIGR02982 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--------SVQEGSLKV--LGQELYGASEKELVQLRRNIGYIFQ 89 (220)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCeEEEE--CCEEhHhcCHhHHHHHHhheEEEcC
Confidence 45565555 88999999999999999999999976 234444332 222110 1123444555
Q ss_pred CCCCCCCccccccchhhh-hh-------hhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 259 ADLPFSGLTTFGGAFLSK-FE-------CSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~-~~-------~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
....+...+...+..... +. .......+++.+.+- + .|.-.|+ +++++. ++++++.++++
T Consensus 90 ~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~-------laral~~~p~i 162 (220)
T TIGR02982 90 AHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVA-------IARALVHRPKL 162 (220)
T ss_pred ChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 544444444444332111 00 011122333334332 2 2233333 555544 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEecc
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK 361 (547)
+|++ +.+.+.........+++.+.. .+..++++.+-
T Consensus 163 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~ 201 (220)
T TIGR02982 163 VLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD 201 (220)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 9999 444443344555667776654 46677777654
No 490
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=7.9e-08 Score=93.83 Aligned_cols=155 Identities=15% Similarity=0.282 Sum_probs=88.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~ 263 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... ...+...+++....+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~--------~p~~G~v~i--~g~~~~~~~~~~~~i~~~~q~~~~~ 83 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI--------KPDSGKILL--NGKDITNLPPEKRDISYVPQNYALF 83 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc--------CCCceEEEE--CCEEcCcCChhHcCEEEEeecCccC
Confidence 35555444 88999999999999999999999987 234444333 221110 112445555655555
Q ss_pred CCccccccchhhh-h------hhhcccccccccceE---Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLSK-F------ECSQMSHPLLDQVTF---VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~~-~------~~~~~~~~ll~~l~l---vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
...+..++..... . .......++++.+.+ +| .|.-.|+ +++++. ++++++.++++++++
T Consensus 84 ~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~-------laral~~~p~llllDEP 156 (235)
T cd03299 84 PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVA-------IARALVVNPKILLLDEP 156 (235)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHH-------HHHHHHcCCCEEEECCC
Confidence 5555544432111 0 011111223333332 23 3344443 556544 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEecc
Q 008954 330 FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNK 361 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK 361 (547)
+.+.+....+...++++.+... +..++++.+.
T Consensus 157 t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~ 189 (235)
T cd03299 157 FSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4444433445556667666543 6677777664
No 491
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.6e-07 Score=94.30 Aligned_cols=150 Identities=17% Similarity=0.110 Sum_probs=101.7
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
.|+..|+--.|||||+.++.|..-...+-..+.+++...-+.| ...++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y-----------------------~~~~d--------- 49 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYY-----------------------RKLED--------- 49 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEe-----------------------ccCCC---------
Confidence 4788899999999999999987621112112222222221111 11111
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EEEEe
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IRVVL 359 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-iivVl 359 (547)
..++|||.||+-.- + .-.-+.+.-.|..++++|+.+ ++..+..+.+..+.-.+.+ .++|+
T Consensus 50 -------~~~~fIDvpgh~~~----i-------~~miag~~~~d~alLvV~~de-Gl~~qtgEhL~iLdllgi~~giivl 110 (447)
T COG3276 50 -------GVMGFIDVPGHPDF----I-------SNLLAGLGGIDYALLVVAADE-GLMAQTGEHLLILDLLGIKNGIIVL 110 (447)
T ss_pred -------CceEEeeCCCcHHH----H-------HHHHhhhcCCceEEEEEeCcc-CcchhhHHHHHHHHhcCCCceEEEE
Confidence 36899999999642 1 223344678999999999976 6777777777777666655 49999
Q ss_pred ccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 360 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 360 NK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
||+|.++++.+......+...+. .++...+.+|+.+|+|+++
T Consensus 111 tk~D~~d~~r~e~~i~~Il~~l~----l~~~~i~~~s~~~g~GI~~ 152 (447)
T COG3276 111 TKADRVDEARIEQKIKQILADLS----LANAKIFKTSAKTGRGIEE 152 (447)
T ss_pred eccccccHHHHHHHHHHHHhhcc----cccccccccccccCCCHHH
Confidence 99999998877777777765555 3344447899999998875
No 492
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=7e-08 Score=96.49 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=88.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc--------ccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER--------TIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~--------~~~g~~~~~~~ 259 (547)
.+.+.++. .|.+++|+|++|+|||||++.|+|.. .|..+.+.+ .+.... .......+++.
T Consensus 17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--------~~~~G~i~~--~g~~~~~~~~~~~~~~~~i~~v~q~ 86 (275)
T PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL--------KPTSGEVLI--KGEPIKYDKKSLLEVRKTVGIVFQN 86 (275)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCccEEEE--CCEECccccchHHHHHhheEEEeeC
Confidence 45555554 89999999999999999999999976 233343332 221110 01223344444
Q ss_pred CC-CCCCccccccchhhhh-------hhhcccccccccceE---EcC-CCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 260 DL-PFSGLTTFGGAFLSKF-------ECSQMSHPLLDQVTF---VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 260 ~~-~~~~l~~~~~~~~~~~-------~~~~~~~~ll~~l~l---vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
.. .+...+..++...... +.......+++.+.+ .|+ |+-+|+ +++++ .++++++.+++++
T Consensus 87 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv-------~laral~~~p~ll 159 (275)
T PRK13639 87 PDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRV-------AIAGILAMKPEII 159 (275)
T ss_pred hhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHH-------HHHHHHhcCCCEE
Confidence 21 1112233333321110 001112233333333 232 344554 45544 4899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
|++ +.+.+........+++..+.+.+..++++.+..+
T Consensus 160 llDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~ 198 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD 198 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 999 5555544455667777777655677777766544
No 493
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=6.5e-08 Score=94.80 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=85.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc------cccCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE------RTIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~------~~~~g~~~~~~~~~ 261 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++... ....+....++...
T Consensus 18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~i~~~~~~~~~~~i~~~~q~~~ 87 (241)
T PRK14250 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI--------DPTEGSILI--DGVDIKTIDVIDLRRKIGMVFQQPH 87 (241)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEEhhhcChHHhhhcEEEEecCch
Confidence 45555555 89999999999999999999999986 233444332 22110 00123334444433
Q ss_pred CCCCccccccchhhhh-h--hhcccccccccceE----Ec-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--e
Q 008954 262 PFSGLTTFGGAFLSKF-E--CSQMSHPLLDQVTF----VD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--F 330 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~-~--~~~~~~~ll~~l~l----vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~ 330 (547)
.+. .+..++..+... . .......++..+.+ .+ .|+-+|+ +++++. ++++++.+++++|++ +
T Consensus 88 ~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~-------la~al~~~p~llllDEPt 159 (241)
T PRK14250 88 LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVS-------IARTLANNPEVLLLDEPT 159 (241)
T ss_pred hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHH-------HHHHHhcCCCEEEEeCCc
Confidence 332 233333211100 0 00011222333333 22 2444554 555544 899999999999999 5
Q ss_pred cCCCCCCCHHHHHHHHHHhC-CCCeEEEEecc
Q 008954 331 DPHKLDISDEFKRVIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 331 d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK 361 (547)
.+.+........+++..+.+ .+..++++-+.
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~ 191 (241)
T PRK14250 160 SALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 55554444555667777655 36777777554
No 494
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=8.7e-08 Score=98.02 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=91.2
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc---------cCCceeee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT---------IPGNTIAV 257 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~---------~~g~~~~~ 257 (547)
.++++.+|+ .|..++|+|++|+|||||+++|+|.. . |+.+.+.+ .+.+... ...+.+++
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~---~-----p~~G~i~~--~g~~l~~~~~~~~~~~r~~i~~v~ 98 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE---T-----PTGGELYY--QGQDLLKADPEAQKLLRQKIQIVF 98 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC---C-----CCCcEEEE--CCEEcCcCCHHHHHHHhCCEEEEE
Confidence 356676665 89999999999999999999999987 2 33444333 2221100 12344455
Q ss_pred cCCC-CC-CCccccccch--------hhhhhhhcccccccccceE----Ec-CCCCCCh-hhhhhhcccChHHHHHHHhh
Q 008954 258 HADL-PF-SGLTTFGGAF--------LSKFECSQMSHPLLDQVTF----VD-TPGVLSG-EKQRTQRTYDFTGVISWFAA 321 (547)
Q Consensus 258 ~~~~-~~-~~l~~~~~~~--------~~~~~~~~~~~~ll~~l~l----vD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (547)
+... .+ ..++...+.. ....+.......+++.+.+ .| .|+-+|+ ++|++. ++++++.
T Consensus 99 Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~-------iArAL~~ 171 (327)
T PRK11308 99 QNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIA-------IARALML 171 (327)
T ss_pred cCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHH-------HHHHHHc
Confidence 5431 11 1122111110 0011111222334444433 12 4666665 666655 8999999
Q ss_pred cCCeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 322 KCDLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 322 ~aD~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
+++++|++ +.+.+.....++.+++..+.+ .+..+++|-+..+
T Consensus 172 ~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 172 DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 99999999 555554445567777777765 4677777765433
No 495
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.61 E-value=6.2e-08 Score=91.30 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=31.2
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCC------CCCCCCCCcccceeEE
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNY------PGAHIGPEPTTDRFVV 240 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~------~~~~v~~~~~T~~~~~ 240 (547)
+..++++|.+|+|||||||+|++... ....++..|+||+...
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~ 174 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLI 174 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeE
Confidence 35699999999999999999998653 1135566666666443
No 496
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.61 E-value=6.8e-08 Score=105.72 Aligned_cols=163 Identities=13% Similarity=0.128 Sum_probs=92.9
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc--------cc--CCceee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER--------TI--PGNTIA 256 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~--------~~--~g~~~~ 256 (547)
.++.+.+|+ .|.+++|+|++|+|||||++.|+|... +....|+.+.+.+ ++.... .. ....++
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~--~g~~i~~~~~~~~~~~~~~~ig~v 97 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRF--HGESLLHASEQTLRGVRGNKIAMI 97 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEE--CCEecccCCHHHHHHHhcCceEEE
Confidence 356676665 899999999999999999999999873 2111123444333 221110 01 234455
Q ss_pred ecCCC--CCCCccccccchh--------hhhhhhcccccccccceEE------c-CCCCCCh-hhhhhhcccChHHHHHH
Q 008954 257 VHADL--PFSGLTTFGGAFL--------SKFECSQMSHPLLDQVTFV------D-TPGVLSG-EKQRTQRTYDFTGVISW 318 (547)
Q Consensus 257 ~~~~~--~~~~l~~~~~~~~--------~~~~~~~~~~~ll~~l~lv------D-TPG~~~~-~~~~~~~~~~~~~~~~~ 318 (547)
++... .+...+...+.+. ...........+++.+.+- | .|+-+|+ ++|++. ++++
T Consensus 98 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~-------iAra 170 (529)
T PRK15134 98 FQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVM-------IAMA 170 (529)
T ss_pred ecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHH-------HHHH
Confidence 55431 1112222222110 0001112223344444442 3 3566665 666655 8999
Q ss_pred HhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 319 FAAKCDLILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 319 ~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
++.+++++|++ +.+.++.....+.++++.+... +..+++|.+..+
T Consensus 171 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 218 (529)
T PRK15134 171 LLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS 218 (529)
T ss_pred HhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH
Confidence 99999999999 5555544455666777777543 677788777655
No 497
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=4.8e-08 Score=92.66 Aligned_cols=149 Identities=20% Similarity=0.277 Sum_probs=83.0
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCC-CC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPF-SG 265 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~-~~ 265 (547)
.++++.+|+ +|..|+|+|+||||||||++.|.|.. .|+++...+- +.- .+ .++-..-| +.
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~--------~Pt~G~v~v~--G~v---~~----li~lg~Gf~pe 103 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY--------KPTSGKVKVT--GKV---AP----LIELGAGFDPE 103 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc--------CCCCceEEEc--ceE---eh----hhhcccCCCcc
Confidence 478888887 99999999999999999999999988 4555555441 110 00 01111111 13
Q ss_pred ccccccchhh-------hhhhhccccccc---ccceEEcCC--CCCChhhhhhhcccChHHHHHHHhhcCCeEEEE--ec
Q 008954 266 LTTFGGAFLS-------KFECSQMSHPLL---DQVTFVDTP--GVLSGEKQRTQRTYDFTGVISWFAAKCDLILLL--FD 331 (547)
Q Consensus 266 l~~~~~~~~~-------~~~~~~~~~~ll---~~l~lvDTP--G~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv--~d 331 (547)
++..+|..+. +.+......++. +-=.++|.| -+.+|+.-|+. .+-+...++|++|++ ++
T Consensus 104 lTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLa-------Fsia~~~~pdILllDEvla 176 (249)
T COG1134 104 LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLA-------FSVATHVEPDILLLDEVLA 176 (249)
T ss_pred cchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHH-------HhhhhhcCCCEEEEehhhh
Confidence 3444444321 111111111110 111467777 34445544443 344446899999998 55
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 332 PHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 332 ~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
.-+....+.-.+.+..+.+.+..+++|-+-
T Consensus 177 vGD~~F~~K~~~rl~e~~~~~~tiv~VSHd 206 (249)
T COG1134 177 VGDAAFQEKCLERLNELVEKNKTIVLVSHD 206 (249)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 554334444445566665556666666543
No 498
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.61 E-value=5.6e-08 Score=96.65 Aligned_cols=157 Identities=22% Similarity=0.212 Sum_probs=87.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---------ccCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---------TIPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---------~~~g~~~~~~ 258 (547)
.+++.++. .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ ++.... .......+++
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~i~~~~~~~~~~~~~~i~~v~q 95 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE--------KPAQGTVSF--RGQDLYQLDRKQRRAFRRDVQLVFQ 95 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEEccccCHHHHHHHhhceEEEec
Confidence 56666555 89999999999999999999999987 234444333 221110 0123444445
Q ss_pred CC--CCCCCccccccchhh--------hhhhhcccccccccceE----EcC-CCCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 259 AD--LPFSGLTTFGGAFLS--------KFECSQMSHPLLDQVTF----VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 259 ~~--~~~~~l~~~~~~~~~--------~~~~~~~~~~ll~~l~l----vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
.. ..+...+...+.... ..........+++.+.+ .|. ++-+|+ ++|++. ++++++.+
T Consensus 96 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~-------laral~~~ 168 (265)
T TIGR02769 96 DSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN-------IARALAVK 168 (265)
T ss_pred ChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH-------HHHHHhcC
Confidence 42 122233333332110 00011112233333333 232 233443 566554 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEeccCC
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNKAD 363 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK~D 363 (547)
++++|++ +.+.+........+++..+.+. +..++++.+..+
T Consensus 169 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 212 (265)
T TIGR02769 169 PKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR 212 (265)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 9999999 5555433445566777776653 677777766543
No 499
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.61 E-value=6.2e-08 Score=86.69 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=31.0
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeE
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFV 239 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~ 239 (547)
.++++|.+|+|||||+|+|+|... ..++..+++++..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~--~~~~~~~~~~~~~ 121 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK--VSVSATPGKTKHF 121 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCCcccce
Confidence 799999999999999999999886 5677766666543
No 500
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.61 E-value=8.1e-08 Score=94.51 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=83.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc-------cCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT-------IPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~-------~~g~~~~~~~~ 260 (547)
.+.+.++. .|..++|+|++|+|||||++.|+|... ..|+.+.+.+ ++..... ..+...+.+..
T Consensus 16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~------~~~~~G~i~~--~g~~~~~~~~~~~~~~~i~~~~q~~ 87 (248)
T PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRED------YEVTGGTVEF--KGKDLLELSPEDRAGEGIFMAFQYP 87 (248)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCcc------CCCCceEEEE--CCCccccCCHHHHhhcceEEEecCc
Confidence 56666655 899999999999999999999999841 0233343332 2211100 11233333333
Q ss_pred CCCCCccccc-------cch-------hhhhhhhcccccccccceE----EcCCC--CCC-hhhhhhhcccChHHHHHHH
Q 008954 261 LPFSGLTTFG-------GAF-------LSKFECSQMSHPLLDQVTF----VDTPG--VLS-GEKQRTQRTYDFTGVISWF 319 (547)
Q Consensus 261 ~~~~~l~~~~-------~~~-------~~~~~~~~~~~~ll~~l~l----vDTPG--~~~-~~~~~~~~~~~~~~~~~~~ 319 (547)
..+..++... +.. +............++.+.+ .+.+. -.| |+++++. +++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~-------laral 160 (248)
T PRK09580 88 VEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND-------ILQMA 160 (248)
T ss_pred hhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHH-------HHHHH
Confidence 2222211000 000 0000000011111121112 22322 244 4666554 89999
Q ss_pred hhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 320 AAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 320 ~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+.+++++|++ +.+.+......+.++++.+...+..++++.+..+
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 9999999999 5555544445666777777666677777766543
Done!