Query 008954
Match_columns 547
No_of_seqs 650 out of 5908
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 15:29:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qpt_A EH domain-containing pr 100.0 1.3E-50 4.4E-55 438.9 36.7 398 142-543 8-405 (550)
2 3iev_A GTP-binding protein ERA 99.9 3.1E-28 1.1E-32 245.9 -6.5 231 199-479 10-268 (308)
3 1wf3_A GTP-binding protein; GT 99.9 1.1E-25 3.7E-30 226.3 -3.7 226 200-479 8-258 (301)
4 3geh_A MNME, tRNA modification 99.9 5.1E-27 1.8E-31 248.5 -16.1 319 21-405 9-373 (462)
5 3gee_A MNME, tRNA modification 99.9 3.6E-26 1.2E-30 242.9 -11.4 239 95-405 130-387 (476)
6 1ega_A Protein (GTP-binding pr 99.9 1.5E-24 5.2E-29 218.2 -6.0 229 199-479 8-259 (301)
7 1xzp_A Probable tRNA modificat 99.8 2E-23 6.9E-28 221.9 -9.5 244 97-405 144-394 (482)
8 3fia_A Intersectin-1; EH 1 dom 99.7 8.2E-18 2.8E-22 143.0 11.6 90 5-95 21-110 (121)
9 2j69_A Bacterial dynamin-like 99.7 1.2E-16 4E-21 177.7 18.5 199 140-367 15-245 (695)
10 4dhe_A Probable GTP-binding pr 99.7 1.3E-16 4.4E-21 152.5 15.1 166 198-405 28-200 (223)
11 3pqc_A Probable GTP-binding pr 99.7 4.3E-16 1.5E-20 145.1 14.3 160 197-405 21-183 (195)
12 1eh2_A EPS15; calcium binding, 99.7 4E-16 1.4E-20 131.1 12.0 96 8-110 6-101 (106)
13 1svi_A GTP-binding protein YSX 99.7 4.7E-16 1.6E-20 145.2 13.8 160 198-405 22-184 (195)
14 2hjg_A GTP-binding protein ENG 99.7 2.1E-16 7.2E-21 167.0 12.3 161 198-405 174-338 (436)
15 3iby_A Ferrous iron transport 99.6 9.3E-17 3.2E-21 157.4 5.8 149 200-405 2-156 (256)
16 4dcu_A GTP-binding protein ENG 99.6 7.7E-16 2.6E-20 163.6 11.9 161 198-405 194-358 (456)
17 3zvr_A Dynamin-1; hydrolase, D 99.6 4E-15 1.4E-19 164.3 17.9 232 198-444 50-336 (772)
18 1fi6_A EH domain protein REPS1 99.6 1.6E-15 5.6E-20 124.3 10.6 87 9-95 1-87 (92)
19 1c07_A Protein (epidermal grow 99.6 1.4E-15 4.8E-20 125.4 9.8 93 9-107 2-95 (95)
20 1mky_A Probable GTP-binding pr 99.6 6.2E-16 2.1E-20 163.5 9.2 154 200-405 2-155 (439)
21 1mky_A Probable GTP-binding pr 99.6 3.5E-15 1.2E-19 157.8 14.0 161 198-405 179-344 (439)
22 1qjt_A EH1, epidermal growth f 99.6 1.3E-15 4.5E-20 126.5 8.5 91 14-109 8-98 (99)
23 2hjg_A GTP-binding protein ENG 99.6 1.8E-15 6E-20 159.9 10.5 152 199-405 3-154 (436)
24 3clv_A RAB5 protein, putative; 99.6 3.2E-15 1.1E-19 140.0 10.8 180 198-405 6-193 (208)
25 1iq3_A Ralbp1-interacting prot 99.6 1.4E-15 4.9E-20 128.7 7.1 98 5-108 10-107 (110)
26 2aka_B Dynamin-1; fusion prote 99.6 1.3E-15 4.3E-20 152.6 7.9 111 288-405 125-242 (299)
27 2qu8_A Putative nucleolar GTP- 99.6 2.1E-14 7.1E-19 138.0 15.6 163 198-405 28-194 (228)
28 1upt_A ARL1, ADP-ribosylation 99.6 1.2E-14 4.2E-19 132.1 13.1 150 197-405 5-158 (171)
29 3i8s_A Ferrous iron transport 99.6 2.7E-16 9.3E-21 155.7 1.9 154 199-405 3-158 (274)
30 4bas_A ADP-ribosylation factor 99.6 5.8E-15 2E-19 138.1 10.9 149 198-405 16-178 (199)
31 3t5d_A Septin-7; GTP-binding p 99.6 7.7E-15 2.6E-19 145.3 12.1 158 200-405 9-193 (274)
32 4dcu_A GTP-binding protein ENG 99.6 2.2E-15 7.4E-20 160.2 8.5 153 198-405 22-174 (456)
33 3a1s_A Iron(II) transport prot 99.6 1.2E-15 4E-20 149.7 5.9 150 199-405 5-156 (258)
34 2jq6_A EH domain-containing pr 99.6 7.4E-15 2.5E-19 128.7 10.1 94 8-109 43-136 (139)
35 2gj8_A MNME, tRNA modification 99.6 2.5E-15 8.4E-20 138.0 7.0 150 198-405 3-155 (172)
36 2dyk_A GTP-binding protein; GT 99.6 5.4E-15 1.8E-19 133.2 8.6 150 200-405 2-151 (161)
37 3b1v_A Ferrous iron uptake tra 99.6 2.9E-15 1E-19 147.9 6.9 149 199-405 3-153 (272)
38 1r8s_A ADP-ribosylation factor 99.6 4.7E-14 1.6E-18 127.4 14.4 145 201-405 2-151 (164)
39 1zj6_A ADP-ribosylation factor 99.6 2.7E-14 9.1E-19 132.5 13.0 148 199-405 16-167 (187)
40 1zd9_A ADP-ribosylation factor 99.6 2.1E-14 7.3E-19 133.4 12.2 150 198-405 21-174 (188)
41 2wji_A Ferrous iron transport 99.5 2.6E-15 8.7E-20 136.7 5.2 149 200-405 4-154 (165)
42 3k53_A Ferrous iron transport 99.5 2.4E-15 8.3E-20 148.7 4.1 149 200-405 4-155 (271)
43 1m2o_B GTP-binding protein SAR 99.5 1.9E-14 6.6E-19 134.2 9.9 145 198-405 22-181 (190)
44 2h17_A ADP-ribosylation factor 99.5 2.1E-14 7.2E-19 132.6 10.0 149 198-405 20-172 (181)
45 2g6b_A RAS-related protein RAB 99.5 3.9E-14 1.3E-18 130.1 11.8 151 198-405 9-163 (180)
46 3cph_A RAS-related protein SEC 99.5 9.9E-15 3.4E-19 138.1 8.0 153 195-405 16-171 (213)
47 2h57_A ADP-ribosylation factor 99.5 2.7E-14 9.3E-19 132.8 10.6 151 198-405 20-176 (190)
48 3j2k_7 ERF3, eukaryotic polype 99.5 4.1E-14 1.4E-18 149.3 13.2 171 198-405 16-214 (439)
49 2erx_A GTP-binding protein DI- 99.5 5.4E-14 1.8E-18 127.8 12.2 148 199-405 3-156 (172)
50 1ksh_A ARF-like protein 2; sma 99.5 2.7E-14 9.3E-19 132.2 10.3 149 198-405 17-169 (186)
51 1fzq_A ADP-ribosylation factor 99.5 4.1E-14 1.4E-18 130.8 11.5 149 198-405 15-167 (181)
52 2kgr_A Intersectin-1; structur 99.5 8.3E-14 2.8E-18 118.2 12.4 99 7-111 4-102 (111)
53 2lkc_A Translation initiation 99.5 2E-14 6.8E-19 131.8 9.2 150 198-405 7-160 (178)
54 3q72_A GTP-binding protein RAD 99.5 1.3E-14 4.5E-19 131.4 7.9 146 200-405 3-153 (166)
55 3bc1_A RAS-related protein RAB 99.5 1.2E-13 4E-18 128.2 14.1 156 198-405 10-174 (195)
56 2x2e_A Dynamin-1; nitration, h 99.5 5.3E-15 1.8E-19 151.9 5.1 109 288-405 130-247 (353)
57 1c1y_A RAS-related protein RAP 99.5 7.8E-14 2.7E-18 126.2 12.0 148 200-405 4-156 (167)
58 1zbd_A Rabphilin-3A; G protein 99.5 2.3E-13 7.9E-18 127.8 15.4 149 199-405 8-160 (203)
59 2cxx_A Probable GTP-binding pr 99.5 4.6E-14 1.6E-18 130.8 10.2 158 200-405 2-173 (190)
60 2nzj_A GTP-binding protein REM 99.5 1.2E-13 4E-18 126.1 12.8 150 199-405 4-158 (175)
61 2gf9_A RAS-related protein RAB 99.5 6.6E-14 2.2E-18 130.1 11.2 151 197-405 20-174 (189)
62 3sjy_A Translation initiation 99.5 2.1E-13 7.1E-18 142.5 16.0 173 198-404 7-180 (403)
63 1u8z_A RAS-related protein RAL 99.5 1.2E-13 4E-18 124.8 12.4 147 200-405 5-156 (168)
64 2oil_A CATX-8, RAS-related pro 99.5 3.3E-14 1.1E-18 132.5 8.8 149 198-405 24-177 (193)
65 1jwy_B Dynamin A GTPase domain 99.5 4.7E-14 1.6E-18 142.3 10.4 79 288-368 131-214 (315)
66 4dsu_A GTPase KRAS, isoform 2B 99.5 8.7E-14 3E-18 128.7 11.4 147 200-405 5-155 (189)
67 1ek0_A Protein (GTP-binding pr 99.5 1.1E-13 3.8E-18 125.4 11.8 148 200-405 4-158 (170)
68 3tkl_A RAS-related protein RAB 99.5 1E-13 3.4E-18 129.2 11.7 149 199-405 16-168 (196)
69 2x77_A ADP-ribosylation factor 99.5 3.4E-14 1.1E-18 132.0 8.3 149 198-405 21-173 (189)
70 2fg5_A RAB-22B, RAS-related pr 99.5 6.9E-14 2.4E-18 130.4 10.4 153 195-405 19-175 (192)
71 2ce2_X GTPase HRAS; signaling 99.5 8.9E-14 3E-18 125.3 10.8 147 200-405 4-154 (166)
72 1f6b_A SAR1; gtpases, N-termin 99.5 4.1E-14 1.4E-18 132.9 8.9 151 199-405 25-188 (198)
73 1moz_A ARL1, ADP-ribosylation 99.5 2.4E-14 8.3E-19 131.9 7.1 149 198-405 17-169 (183)
74 2e87_A Hypothetical protein PH 99.5 1.2E-13 4.1E-18 142.0 13.0 156 198-405 166-325 (357)
75 1g16_A RAS-related protein SEC 99.5 1.8E-14 6E-19 130.9 6.0 148 200-405 4-154 (170)
76 1wms_A RAB-9, RAB9, RAS-relate 99.5 5.2E-14 1.8E-18 128.9 9.2 150 199-405 7-163 (177)
77 1zun_B Sulfate adenylate trans 99.5 8.1E-14 2.8E-18 147.0 11.7 105 289-406 105-214 (434)
78 2gf0_A GTP-binding protein DI- 99.5 7.3E-14 2.5E-18 130.5 9.9 149 198-405 7-160 (199)
79 1wb1_A Translation elongation 99.5 6.6E-14 2.3E-18 149.3 10.7 159 199-404 19-177 (482)
80 2b6h_A ADP-ribosylation factor 99.5 9.7E-14 3.3E-18 129.6 10.6 148 198-405 28-180 (192)
81 1z2a_A RAS-related protein RAB 99.5 8E-14 2.7E-18 126.2 9.7 149 199-405 5-156 (168)
82 2bov_A RAla, RAS-related prote 99.5 3.3E-13 1.1E-17 126.8 14.1 149 198-405 13-166 (206)
83 1z0f_A RAB14, member RAS oncog 99.5 1.9E-13 6.5E-18 125.1 12.1 150 198-405 14-167 (179)
84 2fn4_A P23, RAS-related protei 99.5 7.1E-14 2.4E-18 128.2 9.1 148 199-405 9-161 (181)
85 3p26_A Elongation factor 1 alp 99.5 2.1E-13 7.1E-18 145.9 13.9 171 200-406 34-228 (483)
86 2y8e_A RAB-protein 6, GH09086P 99.5 1.6E-13 5.3E-18 125.6 11.1 148 200-405 15-166 (179)
87 2a9k_A RAS-related protein RAL 99.5 3E-13 1E-17 124.6 13.1 148 199-405 18-170 (187)
88 3tw8_B RAS-related protein RAB 99.5 5.1E-14 1.7E-18 129.2 7.6 150 198-405 8-160 (181)
89 1kao_A RAP2A; GTP-binding prot 99.5 1.6E-13 5.4E-18 123.9 10.7 147 200-405 4-155 (167)
90 2a5j_A RAS-related protein RAB 99.5 1.3E-13 4.5E-18 128.3 10.4 149 198-405 20-173 (191)
91 2il1_A RAB12; G-protein, GDP, 99.5 1.9E-13 6.5E-18 127.5 11.5 151 198-405 25-179 (192)
92 2bme_A RAB4A, RAS-related prot 99.5 4.3E-13 1.5E-17 123.8 13.8 150 198-405 9-162 (186)
93 1z0j_A RAB-22, RAS-related pro 99.5 3.3E-13 1.1E-17 122.3 12.7 148 200-405 7-158 (170)
94 2efe_B Small GTP-binding prote 99.5 3.2E-13 1.1E-17 124.0 12.6 148 199-405 12-164 (181)
95 2xtp_A GTPase IMAP family memb 99.5 2.8E-14 9.4E-19 140.0 5.8 126 198-367 21-154 (260)
96 1z08_A RAS-related protein RAB 99.5 1.5E-13 5.1E-18 124.8 10.2 149 199-405 6-158 (170)
97 2fh5_B SR-beta, signal recogni 99.5 5.7E-13 2E-17 126.2 14.7 115 199-367 7-130 (214)
98 2iwr_A Centaurin gamma 1; ANK 99.5 8.5E-13 2.9E-17 121.0 15.4 139 199-405 7-158 (178)
99 3o47_A ADP-ribosylation factor 99.5 1.8E-13 6.1E-18 139.0 11.8 181 165-405 124-316 (329)
100 3qq5_A Small GTP-binding prote 99.5 3.2E-14 1.1E-18 148.5 6.1 153 198-405 33-185 (423)
101 2qtf_A Protein HFLX, GTP-bindi 99.5 5.5E-14 1.9E-18 144.4 7.7 156 200-405 180-343 (364)
102 2wjg_A FEOB, ferrous iron tran 99.5 2.1E-14 7.2E-19 133.0 4.2 150 199-405 7-158 (188)
103 1ky3_A GTP-binding protein YPT 99.5 2.9E-13 1E-17 124.2 11.8 150 199-405 8-167 (182)
104 2ew1_A RAS-related protein RAB 99.5 5.5E-13 1.9E-17 125.6 13.8 150 198-405 25-178 (201)
105 2fu5_C RAS-related protein RAB 99.5 3.8E-14 1.3E-18 130.7 5.4 149 199-405 8-160 (183)
106 1r2q_A RAS-related protein RAB 99.5 2.8E-13 9.6E-18 122.7 11.1 148 200-405 7-158 (170)
107 1x3s_A RAS-related protein RAB 99.5 1.2E-13 4.2E-18 128.4 8.8 149 199-405 15-167 (195)
108 2hxs_A RAB-26, RAS-related pro 99.4 8.3E-14 2.8E-18 127.6 7.4 150 199-405 6-162 (178)
109 3lxx_A GTPase IMAP family memb 99.4 4.4E-14 1.5E-18 136.8 5.8 130 198-371 28-164 (239)
110 2hup_A RAS-related protein RAB 99.4 4.4E-13 1.5E-17 126.0 12.4 151 198-405 28-182 (201)
111 3oes_A GTPase rhebl1; small GT 99.4 2E-13 6.8E-18 128.3 9.9 150 197-405 22-176 (201)
112 2p5s_A RAS and EF-hand domain 99.4 3E-13 1E-17 126.9 11.0 150 198-405 27-186 (199)
113 2yc2_C IFT27, small RAB-relate 99.4 1.9E-13 6.6E-18 128.5 9.7 152 199-405 20-181 (208)
114 3t1o_A Gliding protein MGLA; G 99.4 1.2E-12 4E-17 121.8 14.8 98 289-405 75-181 (198)
115 2f7s_A C25KG, RAS-related prot 99.4 9.6E-14 3.3E-18 131.9 7.5 160 198-405 24-188 (217)
116 3t34_A Dynamin-related protein 99.4 1.8E-13 6.3E-18 140.8 9.9 197 198-405 33-250 (360)
117 1vg8_A RAS-related protein RAB 99.4 8.1E-14 2.8E-18 131.2 6.6 150 199-405 8-164 (207)
118 3lxw_A GTPase IMAP family memb 99.4 2.2E-13 7.5E-18 132.7 9.8 123 198-366 20-153 (247)
119 3dz8_A RAS-related protein RAB 99.4 1.7E-13 5.7E-18 127.6 8.6 148 198-405 22-175 (191)
120 4gzl_A RAS-related C3 botulinu 99.4 1.2E-13 4E-18 130.4 7.6 154 198-405 29-194 (204)
121 4djt_A GTP-binding nuclear pro 99.4 1.2E-13 4.1E-18 131.4 7.6 149 199-405 11-164 (218)
122 3kkq_A RAS-related protein M-R 99.4 6.4E-13 2.2E-17 122.4 12.1 148 199-405 18-171 (183)
123 1pui_A ENGB, probable GTP-bind 99.4 7.2E-13 2.5E-17 125.1 12.8 169 190-405 17-188 (210)
124 3con_A GTPase NRAS; structural 99.4 3.4E-13 1.2E-17 125.1 10.1 148 199-405 21-172 (190)
125 2bcg_Y Protein YP2, GTP-bindin 99.4 4.6E-13 1.6E-17 126.1 11.1 149 199-405 8-160 (206)
126 2atv_A RERG, RAS-like estrogen 99.4 1.1E-12 3.9E-17 122.5 13.6 148 198-405 27-180 (196)
127 2atx_A Small GTP binding prote 99.4 4.2E-13 1.5E-17 125.0 10.6 152 200-405 19-182 (194)
128 3mca_A HBS1, elongation factor 99.4 3.1E-14 1.1E-18 155.3 3.0 174 198-406 176-373 (592)
129 2fv8_A H6, RHO-related GTP-bin 99.4 1.9E-13 6.6E-18 129.0 8.0 153 199-405 25-189 (207)
130 3ihw_A Centg3; RAS, centaurin, 99.4 2.3E-12 7.9E-17 119.4 15.1 140 198-405 19-169 (184)
131 1nrj_B SR-beta, signal recogni 99.4 1.5E-13 5.2E-18 130.7 7.1 117 198-367 11-135 (218)
132 3llu_A RAS-related GTP-binding 99.4 9.7E-13 3.3E-17 123.1 12.4 155 198-405 19-186 (196)
133 3izq_1 HBS1P, elongation facto 99.4 1.1E-12 3.8E-17 143.5 14.7 107 288-406 245-362 (611)
134 3q85_A GTP-binding protein REM 99.4 1.2E-13 4E-18 125.5 5.9 149 200-405 3-156 (169)
135 1mh1_A RAC1; GTP-binding, GTPa 99.4 2E-13 6.8E-18 125.9 7.5 152 200-405 6-169 (186)
136 2ged_A SR-beta, signal recogni 99.4 3.2E-13 1.1E-17 125.6 9.0 128 198-378 47-182 (193)
137 1lnz_A SPO0B-associated GTP-bi 99.4 1.3E-13 4.5E-18 140.2 6.8 153 200-405 159-319 (342)
138 2gco_A H9, RHO-related GTP-bin 99.4 3.2E-13 1.1E-17 126.9 8.6 153 199-405 25-189 (201)
139 2o52_A RAS-related protein RAB 99.4 3.4E-13 1.2E-17 126.6 8.6 150 197-405 23-177 (200)
140 3r7w_A Gtpase1, GTP-binding pr 99.4 8.1E-13 2.8E-17 132.9 11.8 155 199-399 3-165 (307)
141 3t5g_A GTP-binding protein RHE 99.4 2.5E-13 8.7E-18 124.9 7.2 148 199-405 6-158 (181)
142 3lvq_E ARF-GAP with SH3 domain 99.4 4.2E-13 1.4E-17 144.2 9.9 148 198-405 321-473 (497)
143 1z06_A RAS-related protein RAB 99.4 1.5E-12 5E-17 120.9 12.2 148 198-403 19-172 (189)
144 2j1l_A RHO-related GTP-binding 99.4 5.1E-13 1.7E-17 126.9 9.3 153 199-405 34-198 (214)
145 3bwd_D RAC-like GTP-binding pr 99.4 2.7E-13 9.2E-18 124.6 6.6 149 199-405 8-170 (182)
146 3cbq_A GTP-binding protein REM 99.4 1.2E-12 4E-17 122.6 10.7 151 198-405 22-177 (195)
147 3reg_A RHO-like small GTPase; 99.4 5.6E-13 1.9E-17 124.3 8.3 150 198-405 22-177 (194)
148 3izy_P Translation initiation 99.4 6.7E-14 2.3E-18 149.9 2.0 151 198-405 3-157 (537)
149 2j0v_A RAC-like GTP-binding pr 99.4 4.5E-13 1.5E-17 126.8 7.6 149 199-405 9-169 (212)
150 2q3h_A RAS homolog gene family 99.4 7.2E-13 2.5E-17 124.2 8.6 155 197-405 18-184 (201)
151 1h65_A Chloroplast outer envel 99.4 9.1E-13 3.1E-17 130.0 9.5 123 200-367 40-169 (270)
152 3q3j_B RHO-related GTP-binding 99.4 7.9E-13 2.7E-17 125.7 8.7 117 198-366 26-145 (214)
153 3cpj_B GTP-binding protein YPT 99.4 7.2E-13 2.5E-17 126.7 8.1 148 199-405 13-165 (223)
154 2c78_A Elongation factor TU-A; 99.4 2.3E-12 8E-17 134.6 12.6 103 288-403 75-181 (405)
155 3def_A T7I23.11 protein; chlor 99.4 1.6E-12 5.6E-17 127.6 10.6 122 199-365 36-164 (262)
156 1f60_A Elongation factor EEF1A 99.4 2.4E-12 8.2E-17 136.5 12.6 105 289-406 86-202 (458)
157 1r5b_A Eukaryotic peptide chai 99.4 1.3E-12 4.5E-17 138.8 10.5 107 289-406 122-242 (467)
158 3th5_A RAS-related C3 botulinu 99.0 6.3E-14 2.2E-18 131.9 0.0 154 198-405 29-194 (204)
159 1wxq_A GTP-binding protein; st 99.4 3.6E-13 1.2E-17 139.9 5.7 34 201-237 2-35 (397)
160 3tr5_A RF-3, peptide chain rel 99.4 4.8E-12 1.6E-16 136.0 14.6 66 289-366 83-148 (528)
161 4a9a_A Ribosome-interacting GT 99.3 7.2E-13 2.4E-17 135.8 7.4 117 200-364 73-194 (376)
162 3c5c_A RAS-like protein 12; GD 99.3 2.1E-12 7.1E-17 119.9 9.8 147 199-405 21-175 (187)
163 1kk1_A EIF2gamma; initiation o 99.3 3.2E-12 1.1E-16 133.9 12.3 105 288-404 83-188 (410)
164 2elf_A Protein translation elo 99.3 6.8E-12 2.3E-16 129.1 14.5 101 289-404 61-168 (370)
165 2www_A Methylmalonic aciduria 99.3 2.6E-11 8.7E-16 124.0 18.3 98 289-405 168-268 (349)
166 1m7b_A RND3/RHOE small GTP-bin 99.3 1.8E-12 6.2E-17 119.8 8.8 116 199-366 7-125 (184)
167 2zej_A Dardarin, leucine-rich 99.3 1.8E-12 6.1E-17 120.0 8.6 155 200-401 3-162 (184)
168 1gwn_A RHO-related GTP-binding 99.3 2.2E-12 7.5E-17 121.8 9.3 117 198-366 27-146 (205)
169 1jny_A EF-1-alpha, elongation 99.3 7E-12 2.4E-16 132.2 13.6 105 289-406 85-203 (435)
170 2xex_A Elongation factor G; GT 99.3 2.7E-12 9.1E-17 142.7 10.8 133 198-367 9-142 (693)
171 1d2e_A Elongation factor TU (E 99.3 3.8E-12 1.3E-16 132.6 10.8 103 288-403 66-172 (397)
172 2ywe_A GTP-binding protein LEP 99.3 3.5E-12 1.2E-16 138.3 10.6 166 200-405 7-173 (600)
173 2g3y_A GTP-binding protein GEM 99.3 6.6E-12 2.2E-16 119.1 11.3 152 199-405 37-192 (211)
174 1zo1_I IF2, translation initia 99.3 4E-13 1.4E-17 142.7 3.0 146 198-405 3-156 (501)
175 4dkx_A RAS-related protein RAB 99.3 1.4E-11 4.8E-16 117.2 12.7 149 199-405 13-165 (216)
176 1g7s_A Translation initiation 99.3 4.9E-12 1.7E-16 137.6 10.6 66 289-366 71-136 (594)
177 3cb4_D GTP-binding protein LEP 99.3 4.1E-12 1.4E-16 138.1 10.0 166 200-405 5-171 (599)
178 3gj0_A GTP-binding nuclear pro 99.3 7.5E-13 2.6E-17 126.2 3.5 149 198-405 14-164 (221)
179 1s0u_A EIF-2-gamma, translatio 99.3 5.7E-12 1.9E-16 131.8 10.0 105 288-404 81-186 (408)
180 2h5e_A Peptide chain release f 99.3 6.7E-12 2.3E-16 135.0 10.7 67 289-367 83-149 (529)
181 3l0i_B RAS-related protein RAB 99.3 2.9E-14 1E-18 133.8 -6.8 149 199-405 33-185 (199)
182 2cjw_A GTP-binding protein GEM 99.3 4.3E-12 1.5E-16 118.4 6.4 151 200-405 7-161 (192)
183 3sop_A Neuronal-specific septi 99.3 2.3E-11 8E-16 119.7 11.8 146 200-381 3-169 (270)
184 1dar_A EF-G, elongation factor 99.3 2.1E-11 7.2E-16 135.4 12.7 68 288-367 77-144 (691)
185 2qpt_A EH domain-containing pr 99.2 1.2E-11 4E-16 133.9 10.0 97 8-112 450-546 (550)
186 2p67_A LAO/AO transport system 99.2 7.4E-12 2.5E-16 127.7 7.6 99 288-405 149-250 (341)
187 2qm8_A GTPase/ATPase; G protei 99.2 2.6E-10 8.9E-15 115.9 18.6 28 196-223 52-79 (337)
188 2qag_A Septin-2, protein NEDD5 99.2 4.6E-11 1.6E-15 122.7 13.0 75 323-402 146-220 (361)
189 3dpu_A RAB family protein; roc 99.2 6.8E-12 2.3E-16 135.9 6.8 155 198-405 40-197 (535)
190 2wkq_A NPH1-1, RAS-related C3 99.2 1.2E-11 4.1E-16 125.2 7.7 153 199-405 155-319 (332)
191 2dy1_A Elongation factor G; tr 99.2 2.3E-11 8E-16 134.6 9.8 133 196-365 6-139 (665)
192 3p32_A Probable GTPase RV1496/ 99.2 1.9E-10 6.3E-15 118.0 15.8 99 288-405 172-273 (355)
193 2f9l_A RAB11B, member RAS onco 99.2 5.8E-11 2E-15 111.1 10.9 148 200-405 6-157 (199)
194 3avx_A Elongation factor TS, e 99.2 1.8E-11 6.2E-16 139.1 8.5 164 199-401 296-463 (1289)
195 3tui_C Methionine import ATP-b 99.2 5.7E-12 1.9E-16 128.3 3.9 158 189-363 42-225 (366)
196 3c5h_A Glucocorticoid receptor 99.2 1.9E-11 6.5E-16 119.5 7.5 77 322-405 162-244 (255)
197 1n0u_A EF-2, elongation factor 99.2 2.7E-11 9.3E-16 137.3 9.8 143 200-365 20-163 (842)
198 2qag_B Septin-6, protein NEDD5 99.2 6.1E-11 2.1E-15 123.0 11.3 146 195-379 36-203 (427)
199 2qag_C Septin-7; cell cycle, c 99.2 8.6E-11 2.9E-15 122.4 11.1 138 201-377 33-192 (418)
200 1udx_A The GTP-binding protein 99.2 6.5E-11 2.2E-15 123.2 9.7 156 196-405 154-314 (416)
201 3tif_A Uncharacterized ABC tra 99.1 9.8E-12 3.4E-16 119.9 3.1 155 190-361 20-205 (235)
202 3rlf_A Maltose/maltodextrin im 99.1 2.2E-11 7.7E-16 124.7 4.7 156 190-362 18-194 (381)
203 2rdo_7 EF-G, elongation factor 99.1 2.9E-10 9.9E-15 126.5 13.6 140 198-367 9-149 (704)
204 3vqt_A RF-3, peptide chain rel 99.1 7.2E-11 2.5E-15 127.5 8.4 131 200-366 32-166 (548)
205 1oix_A RAS-related protein RAB 99.1 1.2E-10 4.2E-15 108.3 8.9 148 199-404 29-180 (191)
206 3j25_A Tetracycline resistance 99.1 3.6E-11 1.2E-15 132.4 4.9 130 201-367 4-134 (638)
207 3fvq_A Fe(3+) IONS import ATP- 99.1 4.1E-11 1.4E-15 121.9 4.3 155 190-361 19-198 (359)
208 1g6h_A High-affinity branched- 99.1 9.2E-11 3.1E-15 114.7 6.3 160 189-365 21-216 (257)
209 2lv7_A Calcium-binding protein 99.1 2.1E-10 7.2E-15 95.1 7.5 71 7-77 26-98 (100)
210 1jal_A YCHF protein; nucleotid 99.1 7.5E-10 2.6E-14 112.7 13.1 106 199-334 2-108 (363)
211 1sgw_A Putative ABC transporte 99.1 4.7E-11 1.6E-15 113.2 3.8 160 189-365 23-196 (214)
212 3ec1_A YQEH GTPase; atnos1, at 99.1 1.6E-11 5.4E-16 126.5 0.5 130 199-377 162-299 (369)
213 3h2y_A GTPase family protein; 99.1 3.2E-11 1.1E-15 124.0 2.8 136 200-381 161-302 (368)
214 2pcj_A ABC transporter, lipopr 99.1 5.7E-11 2E-15 113.7 4.0 155 189-360 18-198 (224)
215 3gfo_A Cobalt import ATP-bindi 99.0 8.1E-11 2.8E-15 115.9 3.6 159 190-365 23-207 (275)
216 1ji0_A ABC transporter; ATP bi 99.0 1.5E-10 5.3E-15 111.9 5.2 155 190-361 21-198 (240)
217 1z47_A CYSA, putative ABC-tran 99.0 2.2E-10 7.4E-15 116.6 6.4 155 190-361 30-205 (355)
218 1b0u_A Histidine permease; ABC 99.0 9.8E-11 3.3E-15 114.7 3.7 155 190-361 21-212 (262)
219 4fn5_A EF-G 1, elongation fact 99.0 2.8E-10 9.6E-15 127.0 7.5 136 200-366 14-151 (709)
220 2yyz_A Sugar ABC transporter, 99.0 5.3E-10 1.8E-14 113.9 8.5 155 190-361 18-193 (359)
221 1vpl_A ABC transporter, ATP-bi 99.0 3E-10 1E-14 110.7 6.4 155 190-361 30-205 (256)
222 2dby_A GTP-binding protein; GD 99.0 4.6E-10 1.6E-14 115.0 8.0 105 200-334 2-111 (368)
223 2nq2_C Hypothetical ABC transp 99.0 3.3E-10 1.1E-14 110.3 6.1 148 190-361 20-188 (253)
224 2olj_A Amino acid ABC transpor 99.0 1.3E-10 4.4E-15 113.8 3.1 155 190-361 39-218 (263)
225 2it1_A 362AA long hypothetical 99.0 5.3E-10 1.8E-14 114.1 7.7 155 190-361 18-193 (362)
226 1oxx_K GLCV, glucose, ABC tran 99.0 5.9E-10 2E-14 113.6 8.0 155 190-361 20-200 (353)
227 1v43_A Sugar-binding transport 99.0 6.6E-10 2.3E-14 113.8 7.8 155 190-361 26-201 (372)
228 3r7w_B Gtpase2, GTP-binding pr 99.0 8.2E-09 2.8E-13 103.3 15.4 71 289-368 47-122 (331)
229 1g29_1 MALK, maltose transport 99.0 2.3E-10 8E-15 117.3 4.2 155 190-361 18-199 (372)
230 3d31_A Sulfate/molybdate ABC t 99.0 2E-10 6.8E-15 116.7 3.5 155 190-361 15-187 (348)
231 2d2e_A SUFC protein; ABC-ATPas 99.0 4E-10 1.4E-14 109.6 5.2 160 189-364 17-205 (250)
232 2qnr_A Septin-2, protein NEDD5 99.0 1.1E-09 3.8E-14 109.5 8.5 77 323-405 127-203 (301)
233 4g1u_C Hemin import ATP-bindin 98.9 4.1E-10 1.4E-14 110.5 4.4 156 189-361 25-207 (266)
234 2onk_A Molybdate/tungstate ABC 98.9 1.1E-09 3.7E-14 105.8 7.2 153 191-361 15-186 (240)
235 2ktg_A Calmodulin, putative; e 98.9 6.1E-09 2.1E-13 82.9 9.9 71 8-78 5-77 (85)
236 1mv5_A LMRA, multidrug resista 98.9 2E-09 6.9E-14 104.2 8.0 152 190-360 17-196 (243)
237 2qi9_C Vitamin B12 import ATP- 98.9 5.7E-10 2E-14 108.3 3.8 154 190-361 15-192 (249)
238 1tq4_A IIGP1, interferon-induc 98.9 1.1E-07 3.7E-12 98.6 21.1 120 198-365 68-188 (413)
239 2yz2_A Putative ABC transporte 98.9 9.3E-10 3.2E-14 108.0 5.3 159 190-365 22-201 (266)
240 3nso_A Protein S100-A3; EF-han 98.9 4.4E-09 1.5E-13 87.0 8.3 73 14-86 7-88 (101)
241 2j37_W Signal recognition part 98.9 7E-10 2.4E-14 117.9 3.7 194 288-492 184-432 (504)
242 2pmy_A RAS and EF-hand domain- 98.9 3.8E-09 1.3E-13 85.7 7.1 70 9-78 19-88 (91)
243 2opo_A Polcalcin CHE A 3; calc 98.9 9E-09 3.1E-13 82.2 9.2 70 9-78 3-73 (86)
244 2joj_A Centrin protein; N-term 98.9 6.4E-09 2.2E-13 81.0 8.1 68 11-78 1-70 (77)
245 3n22_A Protein S100-A2; EF-han 98.9 1.1E-08 3.8E-13 84.2 9.7 74 13-86 7-89 (98)
246 1yrb_A ATP(GTP)binding protein 98.9 1.3E-08 4.5E-13 99.2 12.0 75 289-369 110-188 (262)
247 2ihy_A ABC transporter, ATP-bi 98.9 3.4E-10 1.2E-14 111.8 0.6 160 189-365 35-226 (279)
248 2zu0_C Probable ATP-dependent 98.8 3.1E-09 1.1E-13 104.3 7.4 159 190-363 35-225 (267)
249 4eto_A Protein S100-A4; calciu 98.8 1.5E-08 5E-13 82.6 9.5 73 13-85 6-87 (93)
250 2ff7_A Alpha-hemolysin translo 98.8 1.9E-09 6.6E-14 104.5 4.9 155 190-363 24-205 (247)
251 1avs_A Troponin C; muscle cont 98.8 1.4E-08 4.7E-13 82.0 9.2 69 10-78 13-83 (90)
252 3zwh_A Protein S100-A4; Ca-bin 98.8 1.6E-08 5.4E-13 84.2 9.8 74 13-86 9-91 (104)
253 2v3c_C SRP54, signal recogniti 98.8 7.3E-09 2.5E-13 108.4 9.4 174 288-478 181-399 (432)
254 3e70_C DPA, signal recognition 98.8 1.9E-08 6.5E-13 101.4 11.1 146 197-366 127-282 (328)
255 1j7q_A CAVP, calcium vector pr 98.8 1.4E-08 4.8E-13 81.0 8.1 71 7-78 4-79 (86)
256 3nh6_A ATP-binding cassette SU 98.8 5.1E-09 1.7E-13 104.5 6.1 153 190-361 69-248 (306)
257 2cbz_A Multidrug resistance-as 98.8 3.1E-09 1.1E-13 102.4 4.4 149 190-364 20-191 (237)
258 2ixe_A Antigen peptide transpo 98.8 5.6E-09 1.9E-13 102.7 5.8 154 190-361 34-216 (271)
259 2pze_A Cystic fibrosis transme 98.8 3.7E-09 1.3E-13 101.4 4.2 120 189-333 22-159 (229)
260 2lnk_A Protein S100-A4; EF-han 98.7 2E-08 6.7E-13 84.8 8.1 77 11-87 16-101 (113)
261 3szr_A Interferon-induced GTP- 98.7 1.7E-08 5.7E-13 110.6 9.8 165 200-367 46-229 (608)
262 2wsm_A Hydrogenase expression/ 98.7 4.3E-09 1.5E-13 99.9 4.3 92 289-405 110-203 (221)
263 3gd7_A Fusion complex of cysti 98.7 3.4E-09 1.2E-13 109.2 3.7 153 189-361 35-213 (390)
264 2ghi_A Transport protein; mult 98.7 1.2E-08 4.1E-13 99.7 7.1 155 190-364 35-216 (260)
265 2ohf_A Protein OLA1, GTP-bindi 98.7 1.2E-08 4.2E-13 104.8 7.1 109 196-334 19-128 (396)
266 2kn2_A Calmodulin; S MAPK phos 98.7 4E-08 1.4E-12 79.4 8.8 68 11-78 3-72 (92)
267 3b60_A Lipid A export ATP-bind 98.7 1.2E-08 4.2E-13 111.3 7.5 156 190-364 358-541 (582)
268 3rm1_A Protein S100-B; alpha-h 98.7 6.5E-08 2.2E-12 78.6 9.8 72 14-86 6-87 (92)
269 3b5x_A Lipid A export ATP-bind 98.7 1.4E-08 4.7E-13 111.0 7.1 155 189-362 357-539 (582)
270 2y5i_A S100Z, S100 calcium bin 98.7 4.6E-08 1.6E-12 80.7 8.5 73 13-85 6-87 (99)
271 4drw_A Protein S100-A10/annexi 98.7 3.5E-08 1.2E-12 84.2 7.8 72 13-85 11-89 (121)
272 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 3.5E-08 1.2E-12 101.6 9.0 110 196-334 17-127 (392)
273 2kax_A Protein S100-A5; EF-han 98.7 2.4E-08 8.4E-13 81.1 6.3 74 13-86 6-85 (92)
274 1j55_A S-100P protein; metal b 98.7 4.1E-08 1.4E-12 80.3 7.6 73 13-85 5-86 (95)
275 2wcb_A Protein S100-A12; calci 98.7 2.6E-08 8.9E-13 81.5 6.4 73 13-85 8-89 (95)
276 1rj9_A FTSY, signal recognitio 98.6 3.7E-08 1.3E-12 98.3 7.9 150 198-366 101-261 (304)
277 1tiz_A Calmodulin-related prot 98.6 7.2E-08 2.4E-12 72.6 7.7 61 18-78 2-64 (67)
278 4a82_A Cystic fibrosis transme 98.6 1.5E-08 5.2E-13 110.5 5.4 157 189-364 355-538 (578)
279 2kz2_A Calmodulin, CAM; TR2C, 98.6 1.2E-07 4.1E-12 77.3 9.3 64 15-78 27-92 (94)
280 3nxa_A Protein S100-A16; S100 98.6 1.1E-07 3.9E-12 78.4 9.2 72 13-84 7-88 (100)
281 1yx7_A Calsensin, LAN3-6 antig 98.6 1.1E-08 3.8E-13 81.0 2.9 68 12-79 2-77 (83)
282 1k2h_A S100A1, S-100 protein, 98.6 1.2E-07 4E-12 76.8 9.0 74 13-86 5-87 (93)
283 2yl4_A ATP-binding cassette SU 98.6 4.1E-08 1.4E-12 107.4 7.9 153 190-361 359-541 (595)
284 2d58_A Allograft inflammatory 98.6 1.1E-07 3.8E-12 79.3 8.6 69 8-77 24-94 (107)
285 2yhs_A FTSY, cell division pro 98.6 2.9E-08 1E-12 104.3 6.1 151 196-366 290-452 (503)
286 3qf4_A ABC transporter, ATP-bi 98.6 7.4E-08 2.5E-12 105.1 9.6 155 189-362 357-538 (587)
287 3ozx_A RNAse L inhibitor; ATP 98.6 4.2E-08 1.4E-12 105.6 6.9 144 195-361 290-445 (538)
288 3qf4_B Uncharacterized ABC tra 98.6 4.1E-08 1.4E-12 107.5 6.9 156 189-363 369-551 (598)
289 1xk4_A Calgranulin A; S100 fam 98.6 7.1E-08 2.4E-12 78.4 6.6 73 13-85 6-83 (93)
290 3bk7_A ABC transporter ATP-bin 98.6 3.1E-08 1.1E-12 108.0 5.8 142 196-361 379-531 (607)
291 1xk4_C Calgranulin B; S100 fam 98.6 2E-07 7E-12 78.7 9.6 73 13-85 8-90 (113)
292 2b1u_A Calmodulin-like protein 98.6 6.3E-08 2.1E-12 73.9 5.9 62 16-77 5-68 (71)
293 1puj_A YLQF, conserved hypothe 98.6 3E-08 1E-12 98.0 5.0 39 198-238 119-157 (282)
294 1c7v_A CAVP, calcium vector pr 98.6 5E-08 1.7E-12 76.8 5.2 65 13-78 5-72 (81)
295 1yqt_A RNAse L inhibitor; ATP- 98.6 5E-08 1.7E-12 105.2 6.5 142 196-361 309-461 (538)
296 1qls_A S100C protein, calgizza 98.6 2E-07 6.9E-12 76.3 8.6 72 14-85 10-90 (99)
297 2pjz_A Hypothetical protein ST 98.5 4.1E-08 1.4E-12 95.9 4.7 146 195-364 27-187 (263)
298 3li6_A Calcium-binding protein 98.5 5.1E-08 1.7E-12 73.3 4.1 60 19-78 2-63 (66)
299 2bbs_A Cystic fibrosis transme 98.5 2.6E-08 9E-13 98.7 2.8 34 190-223 53-88 (290)
300 2lmt_A Calmodulin-related prot 98.5 1.8E-07 6.3E-12 82.7 7.7 61 17-77 83-145 (148)
301 1k9u_A Polcalcin PHL P 7; poll 98.5 2.6E-07 8.8E-12 72.0 7.6 62 17-78 3-65 (78)
302 1s6j_A CDPK, calcium-dependent 98.5 2.6E-08 8.9E-13 79.6 1.8 67 10-76 16-84 (87)
303 1k8u_A S100A6, calcyclin, CACY 98.5 1.8E-07 6.2E-12 75.0 6.8 72 14-85 7-85 (90)
304 3u0k_A Rcamp; fluorescent prot 98.5 2.8E-07 9.5E-12 94.3 9.6 70 8-77 293-364 (440)
305 3fwb_A Cell division control p 98.5 4.9E-07 1.7E-11 80.4 10.2 74 6-79 12-87 (161)
306 2jnf_A Troponin C; stretch act 98.5 4.4E-07 1.5E-11 80.6 9.9 73 7-79 3-78 (158)
307 2h2k_A Protein S100-A13; calci 98.5 2E-07 6.7E-12 77.8 7.0 68 13-80 18-91 (106)
308 1exr_A Calmodulin; high resolu 98.5 4.4E-07 1.5E-11 80.0 9.7 69 10-78 3-73 (148)
309 2lmt_A Calmodulin-related prot 98.5 1.5E-07 5.2E-12 83.3 6.3 70 9-78 2-73 (148)
310 2obh_A Centrin-2; DNA repair c 98.5 2.4E-07 8.3E-12 81.3 7.6 67 12-78 1-69 (143)
311 1psr_A Psoriasin, S100A7; EF-h 98.5 1.2E-07 4.1E-12 78.3 5.1 73 13-86 6-87 (100)
312 3qrx_A Centrin; calcium-bindin 98.5 5.2E-07 1.8E-11 81.1 9.7 72 8-79 19-92 (169)
313 1qx2_A Vitamin D-dependent cal 98.5 2.3E-07 8E-12 71.7 6.3 63 16-78 4-72 (76)
314 1wlz_A DJBP, CAP-binding prote 98.5 3.6E-07 1.2E-11 75.7 7.7 64 15-78 22-87 (105)
315 1dtl_A Cardiac troponin C; hel 98.5 5.4E-07 1.9E-11 80.2 9.4 74 7-80 8-84 (161)
316 1f5n_A Interferon-induced guan 98.5 1.3E-07 4.4E-12 102.1 6.1 25 200-224 39-63 (592)
317 3j16_B RLI1P; ribosome recycli 98.5 1.1E-07 3.9E-12 103.5 5.7 142 196-361 375-527 (608)
318 1a4p_A S100A10; S100 family, E 98.5 2.6E-07 8.9E-12 75.6 6.6 71 13-84 5-82 (96)
319 4ds7_A Calmodulin, CAM; protei 98.4 6.5E-07 2.2E-11 78.2 9.5 71 9-79 3-75 (147)
320 2bl0_C Myosin regulatory light 98.4 4.2E-07 1.4E-11 79.2 8.2 68 12-79 1-70 (142)
321 2lhi_A Calmodulin, serine/thre 98.4 1.6E-07 5.5E-12 86.0 5.7 69 9-77 3-73 (176)
322 3h4s_E KCBP interacting Ca2+-b 98.4 7.3E-07 2.5E-11 77.7 9.4 66 15-80 38-106 (135)
323 3ox6_A Calcium-binding protein 98.4 3.8E-07 1.3E-11 80.2 7.7 71 9-79 3-75 (153)
324 1pva_A Parvalbumin; calcium bi 98.4 3.6E-07 1.2E-11 76.3 7.1 66 13-78 38-108 (110)
325 1wy9_A Allograft inflammatory 98.4 5.1E-07 1.7E-11 80.0 8.5 69 9-78 41-111 (147)
326 2obh_A Centrin-2; DNA repair c 98.4 8E-07 2.7E-11 78.0 9.6 62 16-77 78-141 (143)
327 2lhi_A Calmodulin, serine/thre 98.4 4.2E-07 1.4E-11 83.2 7.8 62 15-77 82-145 (176)
328 3fs7_A Parvalbumin, thymic; ca 98.4 5.1E-07 1.8E-11 75.2 7.6 63 15-77 40-107 (109)
329 3dm5_A SRP54, signal recogniti 98.4 3.4E-06 1.1E-10 87.9 15.3 98 288-405 183-280 (443)
330 5pal_A Parvalbumin; calcium-bi 98.4 5.4E-07 1.8E-11 75.1 7.5 64 15-78 39-107 (109)
331 3i5g_C Myosin catalytic light 98.4 6E-07 2E-11 80.7 8.1 61 17-77 85-149 (159)
332 2pvb_A Protein (parvalbumin); 98.4 7.9E-07 2.7E-11 73.9 8.3 64 15-78 39-107 (108)
333 3i5g_B Myosin regulatory light 98.4 3.1E-07 1.1E-11 82.0 6.1 62 16-78 84-147 (153)
334 3mse_B Calcium-dependent prote 98.4 6.9E-07 2.4E-11 81.7 8.5 66 13-78 35-100 (180)
335 2jjz_A Ionized calcium-binding 98.4 8.9E-07 3E-11 78.7 8.9 66 13-78 46-113 (150)
336 3ozx_A RNAse L inhibitor; ATP 98.4 5.5E-07 1.9E-11 96.9 8.8 60 296-363 136-198 (538)
337 2f2o_A Calmodulin fused with c 98.4 8.3E-07 2.8E-11 80.7 8.5 70 10-79 4-75 (179)
338 1cb1_A Calbindin D9K; calcium- 98.4 1.3E-07 4.4E-12 73.6 2.4 65 15-79 5-75 (78)
339 1rwy_A Parvalbumin alpha; EF-h 98.4 8.3E-07 2.8E-11 73.8 7.4 64 15-78 39-107 (109)
340 1rro_A RAT oncomodulin; calciu 98.4 6.7E-07 2.3E-11 74.3 6.8 63 15-77 39-106 (108)
341 3j16_B RLI1P; ribosome recycli 98.3 4.6E-07 1.6E-11 98.7 7.3 62 295-363 218-282 (608)
342 1bu3_A Calcium-binding protein 98.3 8.6E-07 2.9E-11 73.8 7.4 63 15-77 40-107 (109)
343 2aao_A CDPK, calcium-dependent 98.3 1.7E-06 5.8E-11 77.4 9.9 69 10-78 20-90 (166)
344 3cnl_A YLQF, putative uncharac 98.3 2.3E-07 7.8E-12 90.6 4.3 36 200-237 100-135 (262)
345 1exr_A Calmodulin; high resolu 98.3 1.7E-06 5.8E-11 76.1 9.6 62 16-77 82-145 (148)
346 2ccm_A Calexcitin; EF hand, ca 98.3 2.9E-06 9.9E-11 77.9 11.2 69 12-80 104-172 (191)
347 2mys_C Myosin; muscle protein, 98.3 1.7E-06 5.9E-11 75.6 9.2 70 10-80 1-75 (149)
348 3kl4_A SRP54, signal recogniti 98.3 1.8E-06 6.1E-11 89.9 10.7 72 288-367 180-253 (433)
349 4f4c_A Multidrug resistance pr 98.3 3.8E-07 1.3E-11 108.3 6.3 155 189-365 1093-1279(1321)
350 1yqt_A RNAse L inhibitor; ATP- 98.3 1.4E-07 4.7E-12 101.7 2.3 163 190-363 37-219 (538)
351 1top_A Troponin C; contractIle 98.3 1.2E-06 4.1E-11 78.0 7.9 71 10-80 13-85 (162)
352 3b9q_A Chloroplast SRP recepto 98.3 4.4E-07 1.5E-11 90.5 5.0 151 196-366 97-260 (302)
353 3sjs_A URE3-BP sequence specif 98.3 1.8E-06 6E-11 82.0 8.9 72 9-80 43-116 (220)
354 1q80_A SCP, sarcoplasmic calci 98.3 2.4E-06 8.1E-11 77.0 9.3 66 16-81 93-158 (174)
355 3bk7_A ABC transporter ATP-bin 98.3 3.2E-07 1.1E-11 100.1 3.7 61 296-363 226-289 (607)
356 1s6i_A CDPK, calcium-dependent 98.3 6.2E-07 2.1E-11 82.8 5.2 68 10-77 3-72 (188)
357 3i5g_B Myosin regulatory light 98.3 3.3E-06 1.1E-10 75.3 9.7 83 7-94 6-123 (153)
358 1qv0_A Obelin, OBL; photoprote 98.3 4.4E-06 1.5E-10 76.9 10.7 72 9-80 12-95 (195)
359 1nya_A Calerythrin; EF-hand, m 98.3 1.8E-06 6.3E-11 77.9 8.0 70 11-80 1-87 (176)
360 3qrx_A Centrin; calcium-bindin 98.2 3.5E-06 1.2E-10 75.6 9.6 63 16-78 100-164 (169)
361 3akb_A Putative calcium bindin 98.2 3.1E-06 1.1E-10 75.4 9.0 62 17-78 98-159 (166)
362 3k21_A PFCDPK3, calcium-depend 98.2 1.6E-06 5.5E-11 80.2 7.3 67 10-77 45-113 (191)
363 3g5u_A MCG1178, multidrug resi 98.2 2.2E-06 7.7E-11 101.5 10.0 158 189-365 1047-1233(1284)
364 2og2_A Putative signal recogni 98.2 1.1E-06 3.7E-11 89.5 6.3 151 196-366 154-317 (359)
365 3pm8_A PFCDPK2, calcium-depend 98.2 1E-06 3.4E-11 82.1 5.4 68 10-77 50-119 (197)
366 3j04_B Myosin regulatory light 98.2 1.2E-06 4.1E-11 76.4 5.6 62 17-78 76-139 (143)
367 2ovk_C Myosin catalytic light 98.2 2.5E-06 8.5E-11 75.9 7.8 63 16-78 84-150 (159)
368 2mys_B Myosin; muscle protein, 98.2 2.7E-06 9.2E-11 76.2 8.0 63 16-78 94-158 (166)
369 3i5g_C Myosin catalytic light 98.2 8E-07 2.7E-11 79.9 4.4 69 9-78 1-73 (159)
370 1top_A Troponin C; contractIle 98.2 5.4E-06 1.8E-10 73.6 9.8 64 15-78 94-159 (162)
371 2hf9_A Probable hydrogenase ni 98.2 1.8E-06 6.1E-11 81.8 7.0 24 200-223 39-62 (226)
372 3g5u_A MCG1178, multidrug resi 98.2 1.7E-06 5.8E-11 102.5 8.3 154 189-361 404-584 (1284)
373 3a8r_A Putative uncharacterize 98.2 2.5E-06 8.6E-11 78.1 7.6 63 16-78 97-169 (179)
374 4f4c_A Multidrug resistance pr 98.2 3.3E-06 1.1E-10 100.3 10.6 156 189-363 432-614 (1321)
375 1m45_A MLC1P, myosin light cha 98.2 2E-06 6.8E-11 75.4 6.6 62 17-78 83-146 (148)
376 1uhk_A Aequorin 2, aequorin; E 98.2 3.4E-06 1.2E-10 77.3 8.4 72 9-80 8-91 (191)
377 2bl0_B Myosin regulatory light 98.2 2.5E-06 8.5E-11 74.3 7.0 65 14-78 73-139 (145)
378 3ux8_A Excinuclease ABC, A sub 98.2 1.7E-06 5.7E-11 96.1 7.0 60 296-362 200-264 (670)
379 3fwb_A Cell division control p 98.2 3.9E-06 1.3E-10 74.4 8.1 63 16-78 95-159 (161)
380 1w7j_B Myosin light chain 1; m 98.2 5.5E-07 1.9E-11 79.3 2.3 70 10-79 3-76 (151)
381 2hpk_A Photoprotein berovin; s 98.2 4.2E-06 1.4E-10 78.2 8.4 62 18-79 129-190 (208)
382 1snl_A Nucleobindin 1, calnuc; 98.2 1.9E-06 6.4E-11 71.3 5.3 60 18-77 21-98 (103)
383 3ox6_A Calcium-binding protein 98.2 5.2E-06 1.8E-10 72.8 8.5 62 16-77 87-151 (153)
384 2mys_C Myosin; muscle protein, 98.1 4E-06 1.4E-10 73.3 7.6 63 15-78 83-147 (149)
385 1wdc_C Scallop myosin; calcium 98.1 1.6E-06 5.4E-11 76.9 5.0 70 10-80 2-75 (156)
386 1h8b_A ACT-EF34, alpha-actinin 98.1 4.9E-06 1.7E-10 64.4 7.1 57 16-78 9-70 (75)
387 2sas_A Sarcoplasmic calcium-bi 98.1 3.4E-06 1.2E-10 76.7 7.2 65 16-80 104-168 (185)
388 3a4u_B Multiple coagulation fa 98.1 2.3E-06 8E-11 75.3 5.8 62 16-77 67-142 (143)
389 1nya_A Calerythrin; EF-hand, m 98.1 4.6E-06 1.6E-10 75.2 8.0 63 16-78 101-163 (176)
390 2ccm_A Calexcitin; EF hand, ca 98.1 5.6E-06 1.9E-10 76.0 8.6 72 9-80 4-93 (191)
391 2sas_A Sarcoplasmic calcium-bi 98.1 6.6E-06 2.3E-10 74.7 8.9 70 11-80 2-89 (185)
392 4ds7_A Calmodulin, CAM; protei 98.1 6.2E-06 2.1E-10 71.8 8.4 62 15-77 82-145 (147)
393 2hpk_A Photoprotein berovin; s 98.1 2E-06 6.8E-11 80.4 5.4 71 8-78 27-108 (208)
394 1wdc_C Scallop myosin; calcium 98.1 4.8E-06 1.7E-10 73.6 7.6 63 16-78 83-149 (156)
395 3u0k_A Rcamp; fluorescent prot 98.1 4.7E-06 1.6E-10 85.3 8.2 62 16-77 374-437 (440)
396 3khe_A Calmodulin-like domain 98.1 5.8E-06 2E-10 75.7 8.1 63 17-79 123-185 (191)
397 1dtl_A Cardiac troponin C; hel 98.1 4E-06 1.4E-10 74.4 6.8 64 15-78 93-158 (161)
398 3pm8_A PFCDPK2, calcium-depend 98.1 2.9E-06 1E-10 78.9 5.9 63 16-78 128-194 (197)
399 2ovk_B RLC, myosin regulatory 98.1 3.8E-06 1.3E-10 74.1 6.4 62 16-78 84-147 (153)
400 2lvv_A Flagellar calcium-bindi 98.1 4.9E-06 1.7E-10 79.2 7.6 72 17-88 133-207 (226)
401 2bl0_C Myosin regulatory light 98.1 3.5E-06 1.2E-10 73.2 6.1 61 16-77 78-140 (142)
402 2jnf_A Troponin C; stretch act 98.1 4.3E-06 1.5E-10 74.1 6.7 62 16-77 90-153 (158)
403 4gp7_A Metallophosphoesterase; 98.1 5E-07 1.7E-11 82.2 0.5 26 196-221 6-31 (171)
404 2znd_A Programmed cell death p 98.1 6.2E-06 2.1E-10 74.4 7.9 65 15-79 5-72 (172)
405 3ll8_B Calcineurin subunit B t 98.1 3.4E-06 1.2E-10 74.3 6.0 65 12-78 1-65 (155)
406 2f2o_A Calmodulin fused with c 98.1 6.8E-06 2.3E-10 74.5 8.1 63 16-78 83-147 (179)
407 1ggw_A Protein (CDC4P); light 98.1 6E-06 2.1E-10 71.6 7.4 63 15-78 74-138 (140)
408 1zu4_A FTSY; GTPase, signal re 98.1 1.4E-05 4.7E-10 80.2 10.9 27 197-223 103-129 (320)
409 3e3r_A Calcyphosin, calcyphosi 98.1 5.1E-06 1.7E-10 77.1 7.2 66 12-77 32-99 (204)
410 1wdc_B Scallop myosin; calcium 98.1 1E-05 3.5E-10 71.6 8.9 70 5-78 6-77 (156)
411 1wdc_B Scallop myosin; calcium 98.1 5.6E-06 1.9E-10 73.3 7.1 61 17-78 87-149 (156)
412 1y1x_A Leishmania major homolo 98.1 1.4E-05 4.7E-10 73.7 9.9 63 17-79 93-157 (191)
413 2aao_A CDPK, calcium-dependent 98.1 3.3E-06 1.1E-10 75.5 5.4 62 17-78 99-160 (166)
414 1j8m_F SRP54, signal recogniti 98.1 2E-05 7E-10 78.1 11.7 70 289-367 182-254 (297)
415 2bec_A Calcineurin B homologou 98.1 4.7E-06 1.6E-10 77.4 6.6 66 13-78 110-182 (202)
416 1w7j_B Myosin light chain 1; m 98.1 2.2E-06 7.5E-11 75.4 4.1 62 15-77 85-148 (151)
417 1alv_A Calpain, S-camld; calci 98.1 8.3E-06 2.8E-10 73.7 8.1 65 14-79 1-75 (173)
418 3mse_B Calcium-dependent prote 98.1 7.4E-06 2.5E-10 74.7 7.8 62 17-78 108-177 (180)
419 2znd_A Programmed cell death p 98.0 1.6E-05 5.5E-10 71.6 9.7 64 17-80 74-139 (172)
420 1qv0_A Obelin, OBL; photoprote 98.0 7.7E-06 2.6E-10 75.2 7.6 59 21-79 117-177 (195)
421 3sjs_A URE3-BP sequence specif 98.0 1.2E-05 4E-10 76.2 9.0 64 17-81 117-182 (220)
422 3dtp_E RLC, myosin regulatory 98.0 4E-06 1.4E-10 77.8 5.5 62 16-78 125-188 (196)
423 3k21_A PFCDPK3, calcium-depend 98.0 8.7E-06 3E-10 75.1 7.8 63 16-78 121-190 (191)
424 1y1x_A Leishmania major homolo 98.0 1.3E-05 4.4E-10 73.9 8.8 69 9-79 21-91 (191)
425 1uhk_A Aequorin 2, aequorin; E 98.0 8.9E-06 3E-10 74.4 7.7 59 20-78 112-172 (191)
426 3ll8_B Calcineurin subunit B t 98.0 1.4E-05 4.6E-10 70.4 8.7 65 16-80 74-145 (155)
427 2ovk_C Myosin catalytic light 98.0 3E-06 1E-10 75.3 4.3 68 10-78 2-73 (159)
428 3b85_A Phosphate starvation-in 98.0 9.4E-07 3.2E-11 83.1 1.0 143 197-366 20-162 (208)
429 3j04_B Myosin regulatory light 98.0 7.3E-06 2.5E-10 71.2 6.7 64 11-78 1-66 (143)
430 2bec_A Calcineurin B homologou 98.0 3.2E-06 1.1E-10 78.6 4.6 67 10-78 22-88 (202)
431 2mys_B Myosin; muscle protein, 98.0 1.4E-05 4.8E-10 71.4 8.7 71 5-79 13-86 (166)
432 2qac_A Myosin A tail domain in 98.0 1.1E-05 3.6E-10 70.6 7.6 60 16-77 83-144 (146)
433 3q5d_A Atlastin-1; G protein, 98.0 1.2E-05 4.2E-10 83.9 9.2 23 200-222 68-90 (447)
434 2ovk_B RLC, myosin regulatory 98.0 9.8E-06 3.3E-10 71.4 7.2 68 6-77 5-74 (153)
435 3sg6_A Gcamp2, myosin light ch 98.0 1.6E-05 5.5E-10 82.9 9.6 70 9-78 304-375 (450)
436 3khe_A Calmodulin-like domain 98.0 3.6E-06 1.2E-10 77.2 4.1 66 12-77 35-113 (191)
437 2i7a_A Calpain 13; calcium-dep 98.0 1.3E-05 4.4E-10 73.1 7.4 61 17-79 76-142 (174)
438 2iw3_A Elongation factor 3A; a 98.0 3.7E-06 1.3E-10 95.4 4.5 34 190-223 450-485 (986)
439 2ct9_A Calcium-binding protein 98.0 1.3E-05 4.3E-10 75.0 7.4 63 15-77 111-180 (208)
440 3dtp_E RLC, myosin regulatory 98.0 1.4E-05 5E-10 73.9 7.8 69 6-78 46-116 (196)
441 1m45_A MLC1P, myosin light cha 98.0 1.7E-06 5.8E-11 75.8 1.3 65 16-80 3-70 (148)
442 1jfj_A Ehcabp, calcium-binding 98.0 1E-05 3.5E-10 69.0 6.3 60 19-78 2-63 (134)
443 2npi_A Protein CLP1; CLP1-PCF1 98.0 6.1E-06 2.1E-10 86.9 5.7 28 196-223 135-162 (460)
444 2ehb_A Calcineurin B-like prot 97.9 2E-05 6.8E-10 73.3 8.6 69 10-78 30-101 (207)
445 2bl0_B Myosin regulatory light 97.9 1.3E-05 4.3E-10 69.7 6.7 62 11-78 2-65 (145)
446 1juo_A Sorcin; calcium-binding 97.9 3.9E-06 1.3E-10 77.8 3.5 69 11-80 27-102 (198)
447 1s6i_A CDPK, calcium-dependent 97.9 3.3E-06 1.1E-10 77.8 2.7 60 18-77 83-142 (188)
448 2zfd_A Calcineurin B-like prot 97.9 2.5E-05 8.4E-10 74.1 8.6 70 10-79 41-113 (226)
449 1jba_A GCAP-2, protein (guanyl 97.9 3.3E-05 1.1E-09 71.7 9.3 71 10-80 15-88 (204)
450 3cs1_A Flagellar calcium-bindi 97.9 1.3E-05 4.3E-10 75.8 6.4 67 16-82 129-198 (219)
451 1jfj_A Ehcabp, calcium-binding 97.9 1.9E-05 6.5E-10 67.3 6.8 59 19-77 38-101 (134)
452 3q5i_A Protein kinase; CDPK, m 97.9 1.8E-05 6.1E-10 84.6 7.9 68 11-78 349-426 (504)
453 2l4h_A Calcium and integrin-bi 97.9 1.5E-05 5.2E-10 75.1 6.5 63 16-78 128-201 (214)
454 3nyv_A Calmodulin-domain prote 97.9 2.5E-05 8.7E-10 82.9 8.9 63 16-78 417-479 (484)
455 1dgu_A Calcium-saturated CIB; 97.9 1.3E-05 4.5E-10 73.0 5.7 62 17-78 98-170 (183)
456 1alv_A Calpain, S-camld; calci 97.8 3.6E-05 1.2E-09 69.4 8.2 62 17-79 77-140 (173)
457 2kyc_A Parvalbumin-3, parvalbu 97.8 1.5E-06 5.1E-11 72.2 -1.0 63 16-78 40-107 (108)
458 3q5i_A Protein kinase; CDPK, m 97.8 2E-05 6.9E-10 84.2 7.5 64 17-80 435-498 (504)
459 2l2e_A Calcium-binding protein 97.8 5.4E-05 1.9E-09 69.2 9.2 62 17-78 99-174 (190)
460 3ux8_A Excinuclease ABC, A sub 97.8 4.1E-06 1.4E-10 92.9 1.8 61 295-362 540-606 (670)
461 3e3r_A Calcyphosin, calcyphosi 97.8 4.4E-05 1.5E-09 70.6 8.5 70 12-81 104-183 (204)
462 3dd4_A KV channel-interacting 97.8 2.9E-05 9.9E-10 73.9 7.4 62 17-78 138-213 (229)
463 2iw3_A Elongation factor 3A; a 97.8 1.7E-05 5.8E-10 90.1 6.3 34 190-223 688-723 (986)
464 3akb_A Putative calcium bindin 97.8 4.2E-05 1.4E-09 67.9 7.8 66 15-80 2-84 (166)
465 1vma_A Cell division protein F 97.8 4.8E-05 1.6E-09 75.7 8.6 27 197-223 102-128 (306)
466 1s6c_A KV4 potassium channel-i 97.8 3.7E-05 1.3E-09 69.9 7.2 61 17-77 92-166 (183)
467 1jba_A GCAP-2, protein (guanyl 97.8 3.3E-05 1.1E-09 71.8 6.9 62 17-78 95-175 (204)
468 2r2i_A Guanylyl cyclase-activa 97.8 6.4E-05 2.2E-09 69.4 8.8 66 13-78 48-115 (198)
469 2hps_A Coelenterazine-binding 97.8 4.6E-05 1.6E-09 69.4 7.7 64 17-80 100-167 (186)
470 2kld_A Polycystin-2; PC2, PKD2 97.8 3.8E-06 1.3E-10 71.9 0.2 62 12-77 45-106 (123)
471 1k94_A Grancalcin; penta-EF-ha 97.8 6.7E-05 2.3E-09 67.0 8.5 62 17-80 70-133 (165)
472 1gjy_A Sorcin, CP-22, V19; cal 97.8 5.9E-05 2E-09 67.5 8.1 60 21-80 5-71 (167)
473 2ggz_A Guanylyl cyclase-activa 97.8 7.7E-05 2.6E-09 69.8 9.2 63 16-78 92-162 (211)
474 1g8i_A Frequenin, neuronal cal 97.8 4.4E-05 1.5E-09 69.7 7.4 62 17-78 99-174 (190)
475 2lvv_A Flagellar calcium-bindi 97.8 1.1E-05 3.6E-10 76.8 3.2 71 9-79 43-125 (226)
476 1q80_A SCP, sarcoplasmic calci 97.8 5.1E-05 1.7E-09 68.1 7.6 67 12-80 1-82 (174)
477 3lij_A Calcium/calmodulin depe 97.8 2.5E-05 8.5E-10 83.3 6.4 68 11-78 340-417 (494)
478 1fpw_A Yeast frequenin, calciu 97.7 4.5E-05 1.6E-09 69.6 7.3 62 17-78 99-174 (190)
479 3sg6_A Gcamp2, myosin light ch 97.7 5.4E-05 1.8E-09 79.0 8.4 62 16-77 384-447 (450)
480 2r2i_A Guanylyl cyclase-activa 97.7 7.7E-05 2.6E-09 68.8 8.6 62 17-78 88-158 (198)
481 1gjy_A Sorcin, CP-22, V19; cal 97.7 8.5E-05 2.9E-09 66.5 8.6 62 17-80 72-135 (167)
482 3lij_A Calcium/calmodulin depe 97.7 3.3E-05 1.1E-09 82.4 6.8 63 17-79 426-488 (494)
483 2ehb_A Calcineurin B-like prot 97.7 9.4E-05 3.2E-09 68.7 9.0 63 16-78 110-182 (207)
484 2f33_A Calbindin; EF-hand, Ca2 97.7 1.2E-05 4.1E-10 77.6 2.7 69 9-77 8-84 (263)
485 2be4_A Hypothetical protein LO 97.7 4.7E-05 1.6E-09 73.8 7.0 64 15-78 194-267 (272)
486 2l2e_A Calcium-binding protein 97.7 4.7E-05 1.6E-09 69.6 6.6 70 9-78 6-90 (190)
487 3mwu_A Calmodulin-domain prote 97.7 6.7E-05 2.3E-09 79.7 8.6 67 11-77 325-407 (486)
488 2zfd_A Calcineurin B-like prot 97.7 0.0001 3.5E-09 69.8 8.9 63 16-78 121-193 (226)
489 1s1e_A KV channel interacting 97.7 5.6E-05 1.9E-09 71.6 7.0 62 17-78 125-200 (224)
490 2pt7_A CAG-ALFA; ATPase, prote 97.7 0.00017 5.7E-09 72.7 10.6 26 198-223 170-195 (330)
491 1k94_A Grancalcin; penta-EF-ha 97.7 5.7E-05 2E-09 67.4 6.4 60 21-80 3-69 (165)
492 2d8n_A Recoverin; structural g 97.7 4.4E-05 1.5E-09 71.0 5.8 61 18-78 108-184 (207)
493 1t9h_A YLOQ, probable GTPase E 97.7 1.2E-05 4E-10 80.0 1.8 58 198-300 172-236 (307)
494 1juo_A Sorcin; calcium-binding 97.7 0.00012 4E-09 67.7 8.6 62 17-80 103-166 (198)
495 2ggz_A Guanylyl cyclase-activa 97.6 0.00014 5E-09 67.9 9.3 63 15-77 55-119 (211)
496 1bjf_A Neurocalcin delta; calc 97.6 7E-05 2.4E-09 68.6 6.9 62 17-78 99-174 (193)
497 2px0_A Flagellar biosynthesis 97.6 9.4E-05 3.2E-09 73.3 8.2 26 198-223 104-129 (296)
498 1s6c_A KV4 potassium channel-i 97.6 0.0002 6.9E-09 64.9 9.7 69 10-80 14-85 (183)
499 2ct9_A Calcium-binding protein 97.6 4.1E-05 1.4E-09 71.4 5.1 67 10-78 22-88 (208)
500 2kjq_A DNAA-related protein; s 97.6 6.8E-05 2.3E-09 66.4 6.1 26 198-223 35-60 (149)
No 1
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=100.00 E-value=1.3e-50 Score=438.94 Aligned_cols=398 Identities=52% Similarity=0.921 Sum_probs=319.7
Q ss_pred hhhhccccccCCCCchhhHHHHHHHHHHHHhhchhhhhhhccCCccccccCCCCCCCCcEEEEeeCCCCChhHHHHHHHh
Q 008954 142 SAQWFTSKSVKKTPPSAVTSIIDGLKRLYSEKLKPLEATYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLR 221 (547)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~id~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~V~lvG~~~aGKSTLiN~Llg 221 (547)
|.+|..+...+++....+..+++.|+++|++++.+++..+.+..++.+.+.+..+...++|+|+|.+|+|||||||+|+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~y~~~i~~le~~~~~~~~~~~~l~~~~~~~~~~V~vvG~~n~GKSTLIN~Llg 87 (550)
T 2qpt_A 8 MFSWLKKGGARGQRPEAIRTVTSSLKELYRTKLLPLEEHYRFGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLE 87 (550)
T ss_dssp ------------------CCHHHHHHHHHHHHTHHHHHHTTGGGTTCCCCCSTTTSSCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhHHHHhccccccchhcccccccCCcEEEEECCCCCCHHHHHHHHhC
Confidence 67777633322234577888999999999999999999999999998888888888889999999999999999999999
Q ss_pred CCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhcccccccccceEEcCCCCCCh
Q 008954 222 CNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSG 301 (547)
Q Consensus 222 ~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~ 301 (547)
..+.+.++++.|+|+++..+.+++.....+|.++..+...++..+..+|+.+..++.|...+++++.++.||||||+.++
T Consensus 88 ~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~ 167 (550)
T 2qpt_A 88 QEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSG 167 (550)
T ss_dssp SCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEEECCCHHHHHCEEEECCCBCC-
T ss_pred CccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCc
Confidence 99733479999999999888888776667788877777788888888888888888889999999889999999999986
Q ss_pred hhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhh
Q 008954 302 EKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSL 381 (547)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l 381 (547)
..+.+.+.++|...+.+++.++|++|+|+|+.+.+..+++..+++.+...+.|+++|+||+|+++.+++.++++.++|++
T Consensus 168 ~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l~~s~ 247 (550)
T 2qpt_A 168 AKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWAL 247 (550)
T ss_dssp ------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHhhcch
Confidence 66677777777788899999999999999998866788888899998888889999999999999889999999999999
Q ss_pred hhccCCCCcEEEEecccCCCCCCCCCCCCcchHhhHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008954 382 GKVLNTPEVVRVYIGSFNDKPINGEVVGPIGQELFEKEQDDLLMDLIDIPKKACDRQINEFVKRARAAKIHAYIISHLKK 461 (547)
Q Consensus 382 ~~~~~~~~v~~v~isa~~~~~l~~~~~~~~~~~~~~~~~e~l~~~l~~~~~~~~~~~i~~~~~~~~~~~i~a~i~~~~~~ 461 (547)
.+.++..++..++.+..+..+.. .+.....|..|.|+++..+.++|+....+.|+++.++++.++|||.|++++++
T Consensus 248 ~~i~~vs~l~~~~~~~~~~~~~~----~~~~~~~~~~E~e~l~~~l~elP~~~~v~~i~~~~~~~~~~~I~a~I~v~~~s 323 (550)
T 2qpt_A 248 GKVVGTPEVLRVYIGSFWSQPLL----VPDNRRLFELEEQDLFRDIQGLPRHAALRKLNDLVKRARLVRVHAYIISYLKK 323 (550)
T ss_dssp HHHHCCSSCCCEEESCCSSSCCS----SCTTHHHHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeechHhhhhccccCCCCccc----CCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccCCeEEEEEEEEEeecc
Confidence 88888877777787777665433 24556678888899999987777655555589999888899999999999999
Q ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCccccCChHHHHHHHHHHHhhHHHHhhh
Q 008954 462 EMPTMMGKAKAQQRLIDNLEDEFAKVQREFHLPGGDFPNVEHFREVLNSYNIDKFEKLKPKMIQVVDDMLAYEIPELLKN 541 (547)
Q Consensus 462 ~~~~~~gk~~~~~~~i~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 541 (547)
|++++|||++++.+++.+|..+|.++++.|++++||||+++.|++.++.+++++|++|++++++.|+.+|++|||.||..
T Consensus 324 qk~i~iGk~g~~~~li~~l~~~~~~i~~~~~~~~~d~p~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~~~~~d~~~l~~~ 403 (550)
T 2qpt_A 324 EMPTVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPDCQKMQELLMAHDFTKFHSLKPKLLEALDDMLAQDIAKLMPL 403 (550)
T ss_dssp HSCSSSCHHHHHHHHHHTHHHHHHHHHHTTCCCTTTCCCHHHHHHHHHHSCGGGSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEECCchHHHHHHHhHHHHHHHHHHHhCCCccccCCHHHHHhhhhhCChhhccccCHHHHHHHHhhhHhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hc
Q 008954 542 FR 543 (547)
Q Consensus 542 ~~ 543 (547)
++
T Consensus 404 ~~ 405 (550)
T 2qpt_A 404 LR 405 (550)
T ss_dssp HH
T ss_pred cc
Confidence 86
No 2
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.92 E-value=3.1e-28 Score=245.93 Aligned_cols=231 Identities=20% Similarity=0.307 Sum_probs=169.0
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccc-cchhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFG-GAFLSKF 277 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~-~~~~~~~ 277 (547)
..+|+|+|.+|||||||+|+|+|..+ +++++.|+||+..+.. +...+ +
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~--~i~s~~~~tT~~~~~~-----------------------~~~~~~~------ 58 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKV--SIISPKAGTTRMRVLG-----------------------VKNIPNE------ 58 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEE-----------------------EEEETTT------
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCc--cccCCCCCceeeEEEE-----------------------EEecCCC------
Confidence 35799999999999999999999998 7888888888754421 11111 1
Q ss_pred hhhcccccccccceEEcCCCCCChhh-hhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHH-HHHHhCCCCeE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEK-QRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRV-IASLRGNDDKI 355 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~-~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~l-l~~l~~~~~~i 355 (547)
.++.|+||||+..... ..+.+. +...+...+..+|++++|+|+.+ ..+.....+ +..+...+.|+
T Consensus 59 ----------~~i~lvDTPG~~~~~~~~~l~~~--~~~~~~~~l~~aD~il~VvD~~~-~~~~~~~~~~~~~l~~~~~pv 125 (308)
T 3iev_A 59 ----------AQIIFLDTPGIYEPKKSDVLGHS--MVEIAKQSLEEADVILFMIDATE-GWRPRDEEIYQNFIKPLNKPV 125 (308)
T ss_dssp ----------EEEEEEECCCCCCCCTTCHHHHH--HHHHHHHHHHHCSEEEEEEETTT-BSCHHHHHHHHHHTGGGCCCE
T ss_pred ----------CeEEEEECcCCCccccchhHHHH--HHHHHHHHhhcCCEEEEEEeCCC-CCCchhHHHHHHHHHhcCCCE
Confidence 3799999999976321 111111 23456677899999999999987 456666666 77787778999
Q ss_pred EEEeccCCCc-ChHHHHHHHHHHHHhhhhcc-CCCCcEEEEecccCCCCCCCC-----CCCCcchHhhHH----------
Q 008954 356 RVVLNKADQV-DTQQLMRVYGALMWSLGKVL-NTPEVVRVYIGSFNDKPINGE-----VVGPIGQELFEK---------- 418 (547)
Q Consensus 356 ivVlNK~D~~-~~~~l~~~~~~l~~~l~~~~-~~~~v~~v~isa~~~~~l~~~-----~~~~~~~~~~~~---------- 418 (547)
++|+||+|+. +.+.+......+ .+.+ .+.. .+++||++|.|+++. ..+++.+++|+.
T Consensus 126 ilV~NK~Dl~~~~~~~~~~~~~l----~~~~~~~~~--i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~ 199 (308)
T 3iev_A 126 IVVINKIDKIGPAKNVLPLIDEI----HKKHPELTE--IVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRL 199 (308)
T ss_dssp EEEEECGGGSSSGGGGHHHHHHH----HHHCTTCCC--EEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHH
T ss_pred EEEEECccCCCCHHHHHHHHHHH----HHhccCCCe--EEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHH
Confidence 9999999998 555444444444 2223 2333 479999999987751 223333333322
Q ss_pred -----HHHHHHHHHhhchhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccccccHHHHHHHHHH
Q 008954 419 -----EQDDLLMDLIDIPKKACDRQINEFVKRA---RAAKIHAYIISHLKKEMPTMMGKAKAQQRLIDN 479 (547)
Q Consensus 419 -----~~e~l~~~l~~~~~~~~~~~i~~~~~~~---~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 479 (547)
-+|+++..+.++.||++.+.+++|.++. ..++|+|.|++++++|++++|||+|.+++.|+.
T Consensus 200 ~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~ 268 (308)
T 3iev_A 200 LAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGK 268 (308)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEEEEEESSGGGHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEEEEEEccCCcceEEEcCCcHHHHHHHH
Confidence 1366777788888899999999887665 578899999999999999999999999999976
No 3
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=1.1e-25 Score=226.27 Aligned_cols=226 Identities=20% Similarity=0.280 Sum_probs=160.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+|+|.+|+|||||+|+|+|..+ +++++.|+||+..+. ++...++
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~--~ivs~~~~tTr~~i~-----------------------~i~~~~~-------- 54 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKV--APISPRPQTTRKRLR-----------------------GILTEGR-------- 54 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEE-----------------------EEEEETT--------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce--eeecCCCCceeEEEE-----------------------EEEEeCC--------
Confidence 4699999999999999999999997 788888888764331 0000111
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCC--CCeEEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGN--DDKIRV 357 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~--~~~iiv 357 (547)
.++.|+||||+.... ..+.+. +...+...+..+|++++|+|+++ ..+..+..+++.+... +.|+++
T Consensus 55 --------~~l~l~DTpG~~~~~-~~l~~~--~~~~~~~~l~~ad~il~VvD~~~-~~~~~~~~i~~~l~~~~~~~p~il 122 (301)
T 1wf3_A 55 --------RQIVFVDTPGLHKPM-DALGEF--MDQEVYEALADVNAVVWVVDLRH-PPTPEDELVARALKPLVGKVPILL 122 (301)
T ss_dssp --------EEEEEEECCCCCCCC-SHHHHH--HHHHHHHHTSSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTTTSCEEE
T ss_pred --------cEEEEecCccccchh-hHHHHH--HHHHHHHHHhcCCEEEEEEECCC-CCChHHHHHHHHHHhhcCCCCEEE
Confidence 378999999998642 122211 23456677899999999999987 4666667777777766 789999
Q ss_pred EeccCCCcChHH-HHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCCC-----CCCCcchHhh--------------H
Q 008954 358 VLNKADQVDTQQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINGE-----VVGPIGQELF--------------E 417 (547)
Q Consensus 358 VlNK~D~~~~~~-l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~~-----~~~~~~~~~~--------------~ 417 (547)
|+||+|+....+ +...... ..++. ..+++||++|.++++. ..+++.+++| .
T Consensus 123 V~NK~Dl~~~~~~~~~~~~~-------~~~~~--~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~ 193 (301)
T 1wf3_A 123 VGNKLDAAKYPEEAMKAYHE-------LLPEA--EPRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWV 193 (301)
T ss_dssp EEECGGGCSSHHHHHHHHHH-------TSTTS--EEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHH
T ss_pred EEECcccCCchHHHHHHHHH-------hcCcC--cEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHH
Confidence 999999986544 3322221 12222 3479999988765431 1122221111 1
Q ss_pred --HHHHHHHHHHhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHH
Q 008954 418 --KEQDDLLMDLIDIPKKACDRQINEFVKR-ARAAKIHAYIISHLKKEMPTMMGKAKAQQRLIDN 479 (547)
Q Consensus 418 --~~~e~l~~~l~~~~~~~~~~~i~~~~~~-~~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 479 (547)
.-+++++..+.+..||++.+.+++|.++ .+.+++++.|++++.+|+.++||++|.++|.|+.
T Consensus 194 ~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~i~ve~~~~k~iiig~~g~~lk~i~~ 258 (301)
T 1wf3_A 194 AEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVIGEGGRKIKEIGQ 258 (301)
T ss_dssp HHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEEEEEeeCCceEEEEeCCchHHHHHHH
Confidence 1136677777788888998888888753 2357789999999999999999999999999976
No 4
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=5.1e-27 Score=248.48 Aligned_cols=319 Identities=16% Similarity=0.151 Sum_probs=194.0
Q ss_pred HHHhhhCC--CCCC-----cccHHHHHHHHhh-C-CCC----HHHHHHHHHHHCCCCCCccCHHH--HHH------HHHH
Q 008954 21 EWFDIADS--DGDG-----RITGNDATKFLGL-S-KLS----RQELKQIWALADSKRQGFLDLAE--FVT------AMKL 79 (547)
Q Consensus 21 ~~F~~~D~--~~~G-----~Is~~e~~~~l~~-~-~l~----~~~l~~i~~~~d~~~~g~l~~~e--F~~------~~~l 79 (547)
.+|++..+ .|.| +|||++...+..+ . +.+ .+....+-...|++++..||--- |+. ....
T Consensus 9 tI~A~at~~~~g~~~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s~TgEd~ 88 (462)
T 3geh_A 9 TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSYTREDV 88 (462)
T ss_dssp CEEEECSCCBTTBCSCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSSSSSCE
T ss_pred CEEEECCCCCCCCceEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEEEEcCCCCCcCCce
Confidence 35566666 6666 7888887777766 2 111 11111111223433333454211 111 2345
Q ss_pred HHHHhcCCCCCchhhc------------------cCCCCCCCCCCCCCCccchhhhccccCCCCCCCcCCCcccccccch
Q 008954 80 VSLAQAGREITSDILK------------------SGGLMENTEPPSMEGLETFVAKNKGLKMDSKPAVNGSASVQSQILS 141 (547)
Q Consensus 80 v~~~q~g~~~~~~~~~------------------~~~~~~~~~lp~~~~~~~~i~a~~~~~~~~a~~~~~~~~~g~~~~~ 141 (547)
++.++||+++..+.+. +||+|+++||.|+|++.|+|+|+++.+++.|+++ + .|.++..
T Consensus 89 ~E~~~HGg~~v~~~~l~~~~~~g~r~A~pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~~---l-~g~~~~~ 164 (462)
T 3geh_A 89 VEFHCHGGIIAVQQVLQLCLESGARLAQPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAG---L-QGKLAHP 164 (462)
T ss_dssp EEEEECCSSSHHHHHHHHHHHTTCEECCTTHHHHHHHHTTSCCHHHHHHHHHHHHCCSHHHHHHHHHH---H-HTTTHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCeecCCchhhhhHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHHH---h-chhHHHH
Confidence 6667777776544433 2599999999999999999999999999999999 7 9999999
Q ss_pred hhhhccccccCCCCchhhHHHHHHHH-------HHHHhhchhhhhhhccCCccccccCCCCCCCCcEEEEeeCCCCChhH
Q 008954 142 SAQWFTSKSVKKTPPSAVTSIIDGLK-------RLYSEKLKPLEATYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTT 214 (547)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~id~l~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~V~lvG~~~aGKST 214 (547)
+..|++ +++. ..+.+|+.+|.-+ ......+..+... +..+..........+.+..|+|+|++|+||||
T Consensus 165 ~~~~r~-~l~~--~~a~iEa~iDf~ed~~~~~~~~~~~~i~~l~~~--l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSS 239 (462)
T 3geh_A 165 IRQLRA-NCLD--ILAEIEARIDFEEDLPPLDDEAIISDIENIAAE--ISQLLATKDKGELLRTGLKVAIVGRPNVGKSS 239 (462)
T ss_dssp HHHHHH-HHHH--HHHHHHHHTTSSSSSCCCCTTTHHHHHHHHHHH--HHHHTTTHHHHHHHHHCEEEEEEECTTSSHHH
T ss_pred HHHHHH-HHHH--HHHHHHhhccccccCChhhHHHHHHHHHHHHHH--HHHHHHHhhhhhhhcCCCEEEEEcCCCCCHHH
Confidence 999999 8888 8888888887211 0111122222221 11111111111223356789999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhcccccccccceEEc
Q 008954 215 FIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVD 294 (547)
Q Consensus 215 LiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvD 294 (547)
|+|+|+|.+. ++++..|+||+.... ....+.+ ..+.|+|
T Consensus 240 Lln~L~~~~~--a~v~~~~gtT~d~~~-----------------~~i~~~g----------------------~~v~liD 278 (462)
T 3geh_A 240 LLNAWSQSDR--AIVTDLPGTTRDVVE-----------------SQLVVGG----------------------IPVQVLD 278 (462)
T ss_dssp HHHHHHHHHB--SCCSCCTTCCHHHHH-----------------HEEEETT----------------------EEEEECC
T ss_pred HHHHHhCCCc--ccccCCCCeeEEEEE-----------------EEEEECC----------------------EEEEEEE
Confidence 9999999886 778887777764320 0001111 2689999
Q ss_pred CCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHH
Q 008954 295 TPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVY 374 (547)
Q Consensus 295 TPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~ 374 (547)
|||+.+.. ..++.. . ...+...+..+|++|+|+|+++ ..+.+..++++.+.. .|+++|+||+|+.......
T Consensus 279 T~G~~~~~-~~ve~~-g-i~~~~~~~~~aD~vl~VvD~s~-~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~~~~--- 349 (462)
T 3geh_A 279 TAGIRETS-DQVEKI-G-VERSRQAANTADLVLLTIDAAT-GWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQLIT--- 349 (462)
T ss_dssp -----------------------CCCCSCSEEEEEEETTT-CSCHHHHHHHHHHTT--SCEEEEEECTTSSCGGGST---
T ss_pred CCccccch-hHHHHH-H-HHHHhhhhhcCCEEEEEeccCC-CCCHHHHHHHHhccC--CcEEEEEECCCCCcchhhH---
Confidence 99997532 112210 0 1123344789999999999987 566777777777754 6999999999998654321
Q ss_pred HHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 375 GALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 375 ~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.+.+.. .....+.+||++|.|+++
T Consensus 350 -----~~~~~~--~~~~~i~iSAktg~Gi~e 373 (462)
T 3geh_A 350 -----SLEYPE--NITQIVHTAAAQKQGIDS 373 (462)
T ss_dssp -----TCCCCT--TCCCEEEEBTTTTBSHHH
T ss_pred -----HHHHhc--cCCcEEEEECCCCCCHHH
Confidence 011111 123358999999999875
No 5
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.88 E-value=3.6e-26 Score=242.85 Aligned_cols=239 Identities=16% Similarity=0.150 Sum_probs=141.8
Q ss_pred ccCCCCCCCCCCCCCCccchhhhccccCCCCCCCcCCCcccccccchhhhhccccccCCCCchhhHHHHHH---------
Q 008954 95 KSGGLMENTEPPSMEGLETFVAKNKGLKMDSKPAVNGSASVQSQILSSAQWFTSKSVKKTPPSAVTSIIDG--------- 165 (547)
Q Consensus 95 ~~~~~~~~~~lp~~~~~~~~i~a~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~id~--------- 165 (547)
.+||.|++|||.|+|++.|+|+|+++.+++.|+++ + +|.++..+..|++ .+++ ..+.+|+.||.
T Consensus 130 ~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~~---l-~G~ls~~i~~lr~-~L~~--~~a~iea~iDf~eedi~~~~ 202 (476)
T 3gee_A 130 RRAFLNGRIDLLQAEAIGEMIHARTESAYRTAVSQ---M-KGDLSVRLGGLRE-QLIR--SCALIELELDFSEEDVEFQS 202 (476)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHCCSHHHHHHHHHH---H-HTHHHHHHHHHHT-HHHH--HHHTTTTCSSCCSSCCSSSC
T ss_pred hhhhccCcCcHHHHHHHHHHHhCCCHHHHHHHHHh---h-CCcHHHHHHHHHH-HHHH--HHHHhheecCCCcccccchh
Confidence 34699999999999999999999999999999999 7 9999999999999 7776 66666665551
Q ss_pred ---HHH---HHHhhchhhhhhhccCCccccccCCCCCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeE
Q 008954 166 ---LKR---LYSEKLKPLEATYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFV 239 (547)
Q Consensus 166 ---l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~ 239 (547)
+.. .....++.+...... ....+.+..|+|+|.+|+|||||+|+|+|.+. +.+++.|+||+..
T Consensus 203 ~~~l~~~i~~l~~~l~~~~~~~~~---------~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~--a~vs~~~gtT~d~ 271 (476)
T 3gee_A 203 RDELTMQIETLRSEVNRLIDSYQH---------GRIVSEGVSTVIAGKPNAGKSTLLNTLLGQER--AIVSHMPGTTRDY 271 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHCEEEEEECCTTSSHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---------hHhhcCCCEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCceEEE
Confidence 111 112222222222111 11233567899999999999999999999986 7888888887755
Q ss_pred EEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHH
Q 008954 240 VVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWF 319 (547)
Q Consensus 240 ~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~ 319 (547)
... ...+.+ ..+.|+||||+.... ..++.. . ...+...
T Consensus 272 ~~~-----------------~i~~~g----------------------~~l~liDT~G~~~~~-~~ve~~-g-i~~~~~~ 309 (476)
T 3gee_A 272 IEE-----------------CFIHDK----------------------TMFRLTDTAGLREAG-EEIEHE-G-IRRSRMK 309 (476)
T ss_dssp -CE-----------------EEEETT----------------------EEEEEEC-----------------------CC
T ss_pred EEE-----------------EEEECC----------------------eEEEEEECCCCCcch-hHHHHH-H-HHHHHhh
Confidence 310 001112 278999999997632 112110 0 0123334
Q ss_pred hhcCCeEEEEecCCCCCCCH----HHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEe
Q 008954 320 AAKCDLILLLFDPHKLDISD----EFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYI 395 (547)
Q Consensus 320 ~~~aD~illv~d~~~~~~~~----~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~i 395 (547)
+..+|++|+|+|+++. .+. .+.+++..+. +.|+++|+||+|+........ ..+ .+. ... ..+++
T Consensus 310 ~~~aD~vl~VvD~s~~-~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l----~~~-~~~--~~i~v 377 (476)
T 3gee_A 310 MAEADLILYLLDLGTE-RLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI--RAI----ADG-TGT--EVIGI 377 (476)
T ss_dssp CSSCSEEEEEEETTTC-SSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHH----HHH-HTS--CEEEC
T ss_pred cccCCEEEEEEECCCC-cchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHH----Hhc-CCC--ceEEE
Confidence 7899999999999874 333 5566666665 689999999999986544321 111 111 112 34799
Q ss_pred cccCCCCCCC
Q 008954 396 GSFNDKPING 405 (547)
Q Consensus 396 sa~~~~~l~~ 405 (547)
||++|.|+++
T Consensus 378 SAktg~GI~e 387 (476)
T 3gee_A 378 SALNGDGIDT 387 (476)
T ss_dssp BTTTTBSHHH
T ss_pred EECCCCCHHH
Confidence 9999999875
No 6
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.87 E-value=1.5e-24 Score=218.16 Aligned_cols=229 Identities=20% Similarity=0.265 Sum_probs=161.2
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+|+|++|+|||||+|+|+|..+ +++++.|.|++.... ++...+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~--~i~s~~~~tTr~~~~-----------------------gi~~~~~------- 55 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI--SITSRKAQTTRHRIV-----------------------GIHTEGA------- 55 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE--EECCCCSSCCSSCEE-----------------------EEEEETT-------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCCCcceeeEE-----------------------EEEEECC-------
Confidence 35799999999999999999999987 677877777653321 0100011
Q ss_pred hhcccccccccceEEcCCCCC-ChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVL-SGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~-~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
.++.++||||+. ... ..+.+. +...+...+..+|++++++|+.+ .+..+..+++.+...+.|+++
T Consensus 56 ---------~~i~~iDTpG~~~~~~-~~l~~~--~~~~~~~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~~~P~il 121 (301)
T 1ega_A 56 ---------YQAIYVDTPGLHMEEK-RAINRL--MNKAASSSIGDVELVIFVVEGTR--WTPDDEMVLNKLREGKAPVIL 121 (301)
T ss_dssp ---------EEEEEESSSSCCHHHH-HHHHHH--HTCCTTSCCCCEEEEEEEEETTC--CCHHHHHHHHHHHSSSSCEEE
T ss_pred ---------eeEEEEECcCCCccch-hhHHHH--HHHHHHHHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHhcCCCEEE
Confidence 378999999997 321 111111 11122334689999999999976 667777788888877899999
Q ss_pred EeccCCCcC-hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCCC-----CCCCcchHhhHH-------------
Q 008954 358 VLNKADQVD-TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINGE-----VVGPIGQELFEK------------- 418 (547)
Q Consensus 358 VlNK~D~~~-~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~~-----~~~~~~~~~~~~------------- 418 (547)
|+||+|+.. .+.+......+ .+..++. ..+++||.++.++.+. ..+++.+++|++
T Consensus 122 vlNK~D~~~~~~~~~~~l~~l----~~~~~~~--~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~ 195 (301)
T 1ega_A 122 AVNKVDNVQEKADLLPHLQFL----ASQMNFL--DIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMAS 195 (301)
T ss_dssp EEESTTTCCCHHHHHHHHHHH----HTTSCCS--EEEECCTTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHH
T ss_pred EEECcccCccHHHHHHHHHHH----HHhcCcC--ceEEEECCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHH
Confidence 999999987 45554444433 2323332 3479999999987651 234444433321
Q ss_pred --HHHHHHHHHhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHH
Q 008954 419 --EQDDLLMDLIDIPKKACDRQINEFVKR-ARAAKIHAYIISHLKKEMPTMMGKAKAQQRLIDN 479 (547)
Q Consensus 419 --~~e~l~~~l~~~~~~~~~~~i~~~~~~-~~~~~i~a~i~~~~~~~~~~~~gk~~~~~~~i~~ 479 (547)
-+++++..+.+..||++.+.+++|.++ .+.++++|.|++++.+++.+++|++|.+++.|+.
T Consensus 196 e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~~i~v~~~~~k~i~ig~~G~~~k~ig~ 259 (301)
T 1ega_A 196 EIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGI 259 (301)
T ss_dssp HHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEEEEEEEECCceEEEECCCcHHHHHHHH
Confidence 236778888777778888888877643 2367789999999999999999999999999976
No 7
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.83 E-value=2e-23 Score=221.91 Aligned_cols=244 Identities=15% Similarity=0.186 Sum_probs=159.7
Q ss_pred CCCCCCCCCCCCCCccchhhhccccCCCCCCCcCCCcccccccchhhhhccccccCCCCchhhHHHHHHHHH------HH
Q 008954 97 GGLMENTEPPSMEGLETFVAKNKGLKMDSKPAVNGSASVQSQILSSAQWFTSKSVKKTPPSAVTSIIDGLKR------LY 170 (547)
Q Consensus 97 ~~~~~~~~lp~~~~~~~~i~a~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~id~l~~------~~ 170 (547)
+|.|+++|+.+.|++.|+|.+.++.+++.|.++ + .|.+++.+..|++ .++. ..+.+++.+|.-.+ ..
T Consensus 144 af~nGk~Dl~qaE~i~dli~a~t~~~~~~a~~~---l-~g~l~~~~~~~r~-~l~~--~~~~ie~~idf~eei~~~~~~i 216 (482)
T 1xzp_A 144 AFLNGKMDLTSAEAVRDLIEAKSETSLKLSLRN---L-KGGLRDFVDSLRR-ELIE--VLAEIRVELDYPDEIETNTGEV 216 (482)
T ss_dssp HHHTTSSCHHHHHHHHHHHHCCSHHHHHHHHHH---H-TTHHHHHHHHHHH-HHHH--HHHHHHHHHHSTTTCCCCHHHH
T ss_pred CCCcCCcCHHHHHHHHHHHhhccHHHHHHHHHh---c-chhHhHHHHHHHH-HHHH--HHHHhhhcCCCCccccchHHHH
Confidence 588999999999999999999999999999998 7 9999999999998 6665 55555555442110 01
Q ss_pred HhhchhhhhhhccCCccccccCCCCCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcccc
Q 008954 171 SEKLKPLEATYRFNDFVSPFLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTI 250 (547)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~ 250 (547)
...+..+... ..............+.+..|+|+|.+|||||||+|+|++.+. +++++.|+||+....
T Consensus 217 ~~~~~~l~~e--L~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~--a~vs~~~gTT~d~~~--------- 283 (482)
T 1xzp_A 217 VTRLERIKEK--LTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDR--AIVTDIPGTTRDVIS--------- 283 (482)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTB--CCCCCSSCCSSCSCC---------
T ss_pred HHHHHHHHHH--HHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHHHHHHCCCC--CccCCCCCeeeeeEE---------
Confidence 1111111111 000000000111223567899999999999999999999986 788888888764320
Q ss_pred CCceeeecCCCCCCCccccccchhhhhhhhcccccccccceEEcCCCCC-ChhhhhhhcccChHHHHHHHhhcCCeEEEE
Q 008954 251 PGNTIAVHADLPFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVL-SGEKQRTQRTYDFTGVISWFAAKCDLILLL 329 (547)
Q Consensus 251 ~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~-~~~~~~~~~~~~~~~~~~~~~~~aD~illv 329 (547)
....+.+ ..+.|+||||+. ... ..++ .+. ...+...+..+|++|+|
T Consensus 284 --------~~i~~~g----------------------~~~~l~DTaG~~~~~~-~~ve-~~g-i~~~~~~~~~aD~vl~V 330 (482)
T 1xzp_A 284 --------EEIVIRG----------------------ILFRIVDTAGVRSETN-DLVE-RLG-IERTLQEIEKADIVLFV 330 (482)
T ss_dssp --------EEEEETT----------------------EEEEEEESSCCCSSCC-TTCC-CCC-HHHHHHHHHHCSEEEEE
T ss_pred --------EEEecCC----------------------eEEEEEECCCccccch-hhHH-HHH-HHHHHHHhhcccEEEEE
Confidence 0001111 268999999997 432 2222 111 12355668999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 330 FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+++ ..+.+..++++.+ .+.|+++|+||+|+.......+. ... ... ..+.+++||++|.|+++
T Consensus 331 vD~s~-~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~~~-~~~-------~~~-~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 331 LDASS-PLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEEI-KNK-------LGT-DRHMVKISALKGEGLEK 394 (482)
T ss_dssp EETTS-CCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHHH-HHH-------HTC-STTEEEEEGGGTCCHHH
T ss_pred ecCCC-CCCHHHHHHHHHh--cCCCEEEEEECcccccccCHHHH-HHH-------hcC-CCcEEEEECCCCCCHHH
Confidence 99987 3455566677666 36899999999999753111111 111 111 12347999999999875
No 8
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=99.74 E-value=8.2e-18 Score=143.00 Aligned_cols=90 Identities=32% Similarity=0.399 Sum_probs=86.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHh
Q 008954 5 PSPITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQ 84 (547)
Q Consensus 5 ~~~~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q 84 (547)
+...|.+|++|+++|+++|+.+|+ ++|+|++++++.+|.++++|.++|.+||+++|.|++|.|+++||+.+|+|+..++
T Consensus 21 ~~~~W~it~ee~~~y~~iF~~lD~-~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~~~~ 99 (121)
T 3fia_A 21 SLDTWAITVEERAKHDQQFHSLKP-ISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKL 99 (121)
T ss_dssp CTTTSCCCHHHHHHHHHHHHHTCC-BTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHHHH
Confidence 445799999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhc
Q 008954 85 AGREITSDILK 95 (547)
Q Consensus 85 ~g~~~~~~~~~ 95 (547)
+|.++|..+++
T Consensus 100 ~G~~lP~~LP~ 110 (121)
T 3fia_A 100 QGYQLPSALPP 110 (121)
T ss_dssp TTCCCCSSCCG
T ss_pred cCCCCCCCCCH
Confidence 99999988887
No 9
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.71 E-value=1.2e-16 Score=177.73 Aligned_cols=199 Identities=18% Similarity=0.219 Sum_probs=125.6
Q ss_pred chhhhhccccccCCCCchhhHHHHHHHHHHH---------HhhchhhhhhhccCCccccccCCCCCCCCcEEEEeeCCCC
Q 008954 140 LSSAQWFTSKSVKKTPPSAVTSIIDGLKRLY---------SEKLKPLEATYRFNDFVSPFLTNSDFDAKPMVMLLGQYST 210 (547)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~id~l~~~~---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~V~lvG~~~a 210 (547)
..+..||. ++.. ..+.+++.++...... ...+..+... ...+ ...+..|+|+|.+|+
T Consensus 15 ~~~~~~r~-~L~~--~l~~le~~ld~~e~~~~~~~~~~~l~~~l~~L~~~--~~~l---------~~~~~~V~VvG~~na 80 (695)
T 2j69_A 15 ERVAQVRS-EMSV--CLNKLAETINKAELAGDSSSGKLSLERDIEDITIA--SKNL---------QQGVFRLLVLGDMKR 80 (695)
T ss_dssp HHHHHHHH-HHHH--HHHHHHHHHHHHHTTTTTTTCCCCCHHHHHHHHHH--HHHH---------HHCCEEEEEECCTTS
T ss_pred HHHHHHHH-HHHH--HHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHH--HHHh---------ccCCCEEEEECCCCC
Confidence 44778888 7777 7777777777654321 0111122221 0010 135678999999999
Q ss_pred ChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCC--------Ccccccc-----------
Q 008954 211 GKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFS--------GLTTFGG----------- 271 (547)
Q Consensus 211 GKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--------~l~~~~~----------- 271 (547)
|||||+|+|+|..+ ++++..|+|.+++.+.+++... .++.+....... +....+.
T Consensus 81 GKSSLlNaLlg~~~--~~v~~~p~T~~~~~i~~g~~~~----~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~ 154 (695)
T 2j69_A 81 GKSTFLNALIGENL--LPSDVNPCTAVLTVLRYGPEKK----VTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKK 154 (695)
T ss_dssp CHHHHHHHHHTSSC--SCCCCCTTTCCCEEEEECSSCE----EEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSC
T ss_pred CHHHHHHHHhCCCC--CCCCCCCCccceEEEEeCCCCe----EEEEEcCCCcccccChhhhhhhhcCCHHHHHHHhhccc
Confidence 99999999999998 8999999999998888876421 111110000000 0000000
Q ss_pred --chhhhhhhhccccccc-ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHH-H
Q 008954 272 --AFLSKFECSQMSHPLL-DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIA-S 347 (547)
Q Consensus 272 --~~~~~~~~~~~~~~ll-~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~-~ 347 (547)
...........|++++ ..+.||||||+.+... ....+..++..+|++|+|+|+.. ..+....+.+. .
T Consensus 155 ~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~-~~s~~e~~~l~~~ 225 (695)
T 2j69_A 155 QAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQ-PCTLGERRYLENY 225 (695)
T ss_dssp CSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTS-TTCHHHHHHHHHH
T ss_pred cccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCC-ccchhHHHHHHHH
Confidence 0000111123455665 4799999999976421 13466777899999999999987 45666666664 4
Q ss_pred HhCCCCeEEEEeccCCCcCh
Q 008954 348 LRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 348 l~~~~~~iivVlNK~D~~~~ 367 (547)
+...+.|+++|+||+|+...
T Consensus 226 l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 226 IKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTTSCCCEEEEEECGGGGGG
T ss_pred HHhhCCCEEEEEECcccccc
Confidence 55567899999999999754
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.70 E-value=1.3e-16 Score=152.55 Aligned_cols=166 Identities=17% Similarity=0.250 Sum_probs=110.3
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCC-CCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCN-YPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~-~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
..++|+|+|.+|+|||||+|+|+|.. + ..++..++++.......-. ...+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~--~~~~~~~~~t~~~~~~~~~----------------~~~~----------- 78 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRL--AFASKTPGRTQHINYFSVG----------------PAAE----------- 78 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSS--SCTTCCCCSCCCEEEEEES----------------CTTS-----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc--eeecCCCCcccceEEEEec----------------CCCC-----------
Confidence 56899999999999999999999987 4 5666766665543211000 0001
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhh---cCCeEEEEecCCCCCCCHHHHHHHHHHhCCCC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAA---KCDLILLLFDPHKLDISDEFKRVIASLRGNDD 353 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~---~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~ 353 (547)
..+.|+||||+......... ...+......++. .+|++++++|+.+ ..+.....++..+...+.
T Consensus 79 -----------~~~~l~DtpG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~~~ 145 (223)
T 4dhe_A 79 -----------PVAHLVDLPGYGYAEVPGAA-KAHWEQLLSSYLQTRPQLCGMILMMDARR-PLTELDRRMIEWFAPTGK 145 (223)
T ss_dssp -----------CSEEEEECCCCCSSCCCSTH-HHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHGGGCC
T ss_pred -----------CcEEEEcCCCCCcccCChhh-HHHHHHHHHHHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHHHHhcCC
Confidence 37899999998753100000 0011223333333 4788999999987 567777888888888889
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhcc---CCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVL---NTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~---~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+....+.......+...+.... .......+++||++|.|+.+
T Consensus 146 p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~ 200 (223)
T 4dhe_A 146 PIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDD 200 (223)
T ss_dssp CEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHH
T ss_pred CEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHH
Confidence 99999999999987665555544443333321 01334568999999998764
No 11
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.67 E-value=4.3e-16 Score=145.08 Aligned_cols=160 Identities=17% Similarity=0.223 Sum_probs=104.2
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
...++|+++|.+|+|||||+|+|++... ..+++.+.++........ +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~t~~~~~~~~-------------------------~------ 67 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKI--AFVSKTPGKTRSINFYLV-------------------------N------ 67 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCC--SCCCSSCCCCCCEEEEEE-------------------------T------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcc--ccccCCCCCccCeEEEEE-------------------------C------
Confidence 3557899999999999999999999886 666666655543321100 0
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhc---CCeEEEEecCCCCCCCHHHHHHHHHHhCCCC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAK---CDLILLLFDPHKLDISDEFKRVIASLRGNDD 353 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~---aD~illv~d~~~~~~~~~~~~ll~~l~~~~~ 353 (547)
..+.++||||+......... ...+......+... +|++++++|+.. ........++..+...+.
T Consensus 68 -----------~~~~i~Dt~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~~~ 134 (195)
T 3pqc_A 68 -----------SKYYFVDLPGYGYAKVSKKE-RMLWKRLVEDYFKNRWSLQMVFLLVDGRI-PPQDSDLMMVEWMKSLNI 134 (195)
T ss_dssp -----------TTEEEEECCCBSSSCCCHHH-HHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTC
T ss_pred -----------CcEEEEECCCCccccCChhh-HHHHHHHHHHHHhcCcCceEEEEEecCCC-CCCHHHHHHHHHHHHcCC
Confidence 26889999997543100000 00122233444444 499999999876 556666777777777789
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+.+..+.......+...... . .....+.+||++|.++++
T Consensus 135 p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~Sa~~~~gv~~ 183 (195)
T 3pqc_A 135 PFTIVLTKMDKVKMSERAKKLEEHRKVFSK-Y--GEYTIIPTSSVTGEGISE 183 (195)
T ss_dssp CEEEEEECGGGSCGGGHHHHHHHHHHHHHS-S--CCSCEEECCTTTCTTHHH
T ss_pred CEEEEEEChhcCChHHHHHHHHHHHHHHhh-c--CCCceEEEecCCCCCHHH
Confidence 999999999998665444433333221111 1 223457999999998764
No 12
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=99.67 E-value=4e-16 Score=131.10 Aligned_cols=96 Identities=28% Similarity=0.367 Sum_probs=89.4
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcCC
Q 008954 8 ITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAGR 87 (547)
Q Consensus 8 ~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g~ 87 (547)
.|.+|+++.++|+++|+.+|+ ++|+|++++++.+|++++++.+++.+||..+|.|++|.|+|+||+.+|+++..+++|.
T Consensus 6 ~w~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~~~~~g~ 84 (106)
T 1eh2_A 6 PWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCALEKE 84 (106)
T ss_dssp CCSSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhccCCCCCCCCCCCCCC
Q 008954 88 EITSDILKSGGLMENTEPPSMEG 110 (547)
Q Consensus 88 ~~~~~~~~~~~~~~~~~lp~~~~ 110 (547)
++|.+++. .+.+|+.+.
T Consensus 85 ~lP~~LP~------~l~pps~r~ 101 (106)
T 1eh2_A 85 PVPMSLPP------ALVPPSKRK 101 (106)
T ss_dssp CCCSSCCT------TTSCTTCC-
T ss_pred CCCCCCCc------ccCChhhcc
Confidence 99999887 666776543
No 13
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.67 E-value=4.7e-16 Score=145.17 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=98.1
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..+.|+++|.+|+|||||+|+|++.... ..+++.+.++...... ..+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~-------------------------~~~------- 68 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNL-ARTSSKPGKTQTLNFY-------------------------IIN------- 68 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEE-------------------------EET-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cccCCCCCceeeEEEE-------------------------EEC-------
Confidence 4578999999999999999999998631 3444444443322110 000
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcC---CeEEEEecCCCCCCCHHHHHHHHHHhCCCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKC---DLILLLFDPHKLDISDEFKRVIASLRGNDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~a---D~illv~d~~~~~~~~~~~~ll~~l~~~~~~ 354 (547)
..+.++||||+....... .....+......++..+ |++++++|+.+ ..+....++++.+...+.|
T Consensus 69 ----------~~~~l~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~p 136 (195)
T 1svi_A 69 ----------DELHFVDVPGYGFAKVSK-SEREAWGRMIETYITTREELKAVVQIVDLRH-APSNDDVQMYEFLKYYGIP 136 (195)
T ss_dssp ----------TTEEEEECCCBCCCSSCH-HHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTCC
T ss_pred ----------CcEEEEECCCCCccccCH-HHHHHHHHHHHHHHhhhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCC
Confidence 268999999976531000 00001223445555555 99999999987 4566666677777777899
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+.+..++......+...++. ......+++||+++.++++
T Consensus 137 ~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gv~~ 184 (195)
T 1svi_A 137 VIVIATKADKIPKGKWDKHAKVVRQTLNI---DPEDELILFSSETKKGKDE 184 (195)
T ss_dssp EEEEEECGGGSCGGGHHHHHHHHHHHHTC---CTTSEEEECCTTTCTTHHH
T ss_pred EEEEEECcccCChHHHHHHHHHHHHHHcc---cCCCceEEEEccCCCCHHH
Confidence 99999999998765554444443222221 1234558999999988764
No 14
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.66 E-value=2.1e-16 Score=167.01 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=102.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|.+|+|||||+|+|+|.+. ..+++.++||+..+.. ...+.+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~--~~~~~~~gtT~d~~~~-----------------~~~~~~------------ 222 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEER--VIVSNVAGTTRDAVDT-----------------SFTYNQ------------ 222 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT--EEEC---------CCE-----------------EEEETT------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCc--eeecCCCCceeeeeEE-----------------EEEECC------------
Confidence 347899999999999999999999986 6678878777644310 000111
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHH--HHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGV--ISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKI 355 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~--~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~i 355 (547)
..+.|+||||+....+ +....+.... +...+..+|++|+|+|+.+ +.+.++..++..+...+.++
T Consensus 223 ----------~~~~l~DT~G~~~~~~--~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~-~~s~~~~~~~~~~~~~~~~i 289 (436)
T 2hjg_A 223 ----------QEFVIVDTAGMRKKGK--VYETTEKYSVLRALKAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEAGKAV 289 (436)
T ss_dssp ----------EEEEETTHHHHTCBTT--BCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEE
T ss_pred ----------eEEEEEECCCcCcCcc--ccchHHHHHHHHHHHHHHhCCEEEEEEcCCc-CCcHHHHHHHHHHHHcCCcE
Confidence 2689999999865321 1111122122 2345789999999999988 66777778888777788999
Q ss_pred EEEeccCCCcChHH--HHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQ--LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~--l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+.+..+ ..+....+...+... ...+.+++||++|.++.+
T Consensus 290 iiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~SA~tg~~v~~ 338 (436)
T 2hjg_A 290 VIVVNKWDAVDKDESTMKEFEENIRDHFQFL---DYAPILFMSALTKKRIHT 338 (436)
T ss_dssp EEEEECGGGSCCCTTHHHHHHHHHHHHCGGG---TTSCEEECCTTTCTTGGG
T ss_pred EEEEECccCCCcchHHHHHHHHHHHHhcccC---CCCCEEEEecccCCCHHH
Confidence 99999999986422 222222222222221 223458999999999886
No 15
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.64 E-value=9.3e-17 Score=157.40 Aligned_cols=149 Identities=19% Similarity=0.200 Sum_probs=101.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
++|+++|.+|+|||||+|+|+|.. ..++..|++|...... ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~---~~v~~~pg~Tv~~~~~-----------------------~~~~~~-------- 47 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN---QRVGNWPGVTVEKKTG-----------------------EFLLGE-------- 47 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS---EEEEECTTSSSEEEEE-----------------------EEEETT--------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CCccCCCCceEEEEEE-----------------------EEEECC--------
Confidence 579999999999999999999987 6677767666433210 000111
Q ss_pred hcccccccccceEEcCCCCCChhhh----hhhcccChHHHHHHHh--hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCC
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQ----RTQRTYDFTGVISWFA--AKCDLILLLFDPHKLDISDEFKRVIASLRGNDD 353 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~----~~~~~~~~~~~~~~~~--~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~ 353 (547)
..+.++||||+.+.... ... ..+++.++ ..+|++|+|+|+++ .+....+...+.+.+.
T Consensus 48 --------~~~~lvDtpG~~~~~~~~~~~~~~-----e~i~~~~~~~~~~d~vi~VvDas~---~~~~~~l~~~l~~~~~ 111 (256)
T 3iby_A 48 --------HLIEITDLPGVYSLVANAEGISQD-----EQIAAQSVIDLEYDCIINVIDACH---LERHLYLTSQLFELGK 111 (256)
T ss_dssp --------EEEEEEECCCCSSCC------CHH-----HHHHHHHHHHSCCSEEEEEEEGGG---HHHHHHHHHHHTTSCS
T ss_pred --------eEEEEEeCCCcccccccccCCCHH-----HHHHHHHHhhCCCCEEEEEeeCCC---chhHHHHHHHHHHcCC
Confidence 37899999999764211 111 12455555 89999999999986 3455677788888899
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+.....+......+ .+.++ ++.+++||++|.|+++
T Consensus 112 pvilv~NK~Dl~~~~~~~~~~~~l----~~~lg---~~vi~~SA~~g~gi~e 156 (256)
T 3iby_A 112 PVVVALNMMDIAEHRGISIDTEKL----ESLLG---CSVIPIQAHKNIGIPA 156 (256)
T ss_dssp CEEEEEECHHHHHHTTCEECHHHH----HHHHC---SCEEECBGGGTBSHHH
T ss_pred CEEEEEEChhcCCcCCcHHHHHHH----HHHcC---CCEEEEECCCCCCHHH
Confidence 999999999987443221111222 22222 2458999999998875
No 16
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.63 E-value=7.7e-16 Score=163.63 Aligned_cols=161 Identities=17% Similarity=0.239 Sum_probs=104.1
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|.+|+|||||+|+|+|.+. ..+++.++|++.... ....+.+
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~--~~~~~~~gtt~~~~~-----------------~~~~~~~------------ 242 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEER--VIVSNVAGTTRDAVD-----------------TSFTYNQ------------ 242 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT--EEECC------CTTS-----------------EEEEETT------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCc--cccCCCCCeEEEEEE-----------------EEEEECC------------
Confidence 457899999999999999999999886 677777777653210 0000011
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHH--HHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGV--ISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKI 355 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~--~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~i 355 (547)
..+.|+||||+.... ++....+.... +...+..+|++|+++|+.+ +..+.+..++..+...+.|+
T Consensus 243 ----------~~~~l~DT~G~~~~~--~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~-~~~~~~~~~~~~~~~~~~~~ 309 (456)
T 4dcu_A 243 ----------QEFVIVDTAGMRKKG--KVYETTEKYSVLRALKAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEAGKAV 309 (456)
T ss_dssp ----------EEEEETTGGGTTTBT--TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEE
T ss_pred ----------ceEEEEECCCCCcCc--ccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC-CcCHHHHHHHHHHHHcCCCE
Confidence 368999999987531 11111111112 3345789999999999987 67888888888888889999
Q ss_pred EEEeccCCCcChH--HHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQ--QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~--~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+.+.. ...+....+...+.. .. ..+.+++||++|.++++
T Consensus 310 ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~SA~~g~gv~~ 358 (456)
T 4dcu_A 310 VIVVNKWDAVDKDESTMKEFEENIRDHFQF-LD--YAPILFMSALTKKRIHT 358 (456)
T ss_dssp EEEEECGGGSCCCSSHHHHHHHHHHHHCGG-GT--TSCEEECCTTTCTTGGG
T ss_pred EEEEEChhcCCCchHHHHHHHHHHHHhccc-CC--CCCEEEEcCCCCcCHHH
Confidence 9999999998532 222222222111111 12 23458999999999886
No 17
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.63 E-value=4e-15 Score=164.33 Aligned_cols=232 Identities=15% Similarity=0.175 Sum_probs=132.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccch--hh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAF--LS 275 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~--~~ 275 (547)
.-|.|+|+|.+|+|||||+|+|+|..+ .+++..++|.+.+++.......... .........+ ..+.... +.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~--LP~g~g~~Tr~Pl~l~l~~~~~~~~--~~l~~~~~~~---~~~~~v~~~I~ 122 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDF--LPRGSGIVTRRPLVLQLVNSTTEYA--EFLHCKGKKF---TDFEEVRLEIE 122 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCC--SCCSSSCSCSSCEEEEEEECSSCEE--ECSTTTTCCB---CCHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc--cCcCCccccccceEEEeecCCcchh--heeccCCccc---CCHHHHHHHHH
Confidence 348999999999999999999999997 7888888888776653221110000 0000000000 0111000 00
Q ss_pred ----hhh-----------hhcccccccccceEEcCCCCCChh----hhhhhcccChHHHHHHHh-hcCCeEEEEecCCCC
Q 008954 276 ----KFE-----------CSQMSHPLLDQVTFVDTPGVLSGE----KQRTQRTYDFTGVISWFA-AKCDLILLLFDPHKL 335 (547)
Q Consensus 276 ----~~~-----------~~~~~~~ll~~l~lvDTPG~~~~~----~~~~~~~~~~~~~~~~~~-~~aD~illv~d~~~~ 335 (547)
... ......+-..+++||||||+.... ...+.. .+...+..++ ..+|+||+|+|+..
T Consensus 123 ~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~--~i~~lv~~yi~~~aDlIL~VVDAs~- 199 (772)
T 3zvr_A 123 AETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEF--QIRDMLMQFVTKENCLILAVSPANS- 199 (772)
T ss_dssp HHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHH--HHHHHHHHHHTSTTEEEEEEEETTS-
T ss_pred HHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHH--HHHHHHHHHHhcCCcEEEEEEcCCC-
Confidence 000 011122334578999999998721 000000 0122344443 68999999999986
Q ss_pred CCCHHHH-HHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccC--CCCcEEEEecccCCCCCCCC-----C
Q 008954 336 DISDEFK-RVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLN--TPEVVRVYIGSFNDKPINGE-----V 407 (547)
Q Consensus 336 ~~~~~~~-~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~--~~~v~~v~isa~~~~~l~~~-----~ 407 (547)
+...++. .+++.+...+.|+++|+||+|+++....... +.. .+... ......+++||.+|.|+++. .
T Consensus 200 ~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~---il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 200 DLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARD---VLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHH---HHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred CcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHH---HHH--HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 3443344 7888888889999999999999865322111 110 11111 12233478999999998762 0
Q ss_pred ---CCCcchHh--h----------HHHHHHHHHHHhhchhh----------HHHHHHHHHHH
Q 008954 408 ---VGPIGQEL--F----------EKEQDDLLMDLIDIPKK----------ACDRQINEFVK 444 (547)
Q Consensus 408 ---~~~~~~~~--~----------~~~~e~l~~~l~~~~~~----------~~~~~i~~~~~ 444 (547)
.+++++++ + +--++.++..+++..|+ ++.+.+++|.+
T Consensus 275 e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~ 336 (772)
T 3zvr_A 275 ERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKN 336 (772)
T ss_dssp HHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCC
Confidence 01111111 0 00126778888777777 67777777754
No 18
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=99.62 E-value=1.6e-15 Score=124.25 Aligned_cols=87 Identities=31% Similarity=0.498 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcCCC
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAGRE 88 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g~~ 88 (547)
|.+|+++.++|+++|+.+|.|++|+|+.++++.++++.+++.+++.++|..+|.+++|.|+++||+.+|+.+..+++|.+
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~ 80 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGYD 80 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 78999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCchhhc
Q 008954 89 ITSDILK 95 (547)
Q Consensus 89 ~~~~~~~ 95 (547)
+|.+++.
T Consensus 81 lp~~lp~ 87 (92)
T 1fi6_A 81 LPEKLPE 87 (92)
T ss_dssp CCCCSCS
T ss_pred CCccCCH
Confidence 9999887
No 19
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=99.62 E-value=1.4e-15 Score=125.43 Aligned_cols=93 Identities=28% Similarity=0.388 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHH-hcCC
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLA-QAGR 87 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~-q~g~ 87 (547)
|.+++++.+.|+++|+.+|.|++|+|+.+|++.+|++.+++.+++.++|..+|.+++|.|+++||+.+|+++..+ ++|.
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~~g~ 81 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQKLIKGI 81 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHHHHHTSCC
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHcCC
Confidence 778999999999999999999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred CCCchhhccCCCCCCCCCCC
Q 008954 88 EITSDILKSGGLMENTEPPS 107 (547)
Q Consensus 88 ~~~~~~~~~~~~~~~~~lp~ 107 (547)
++|.+++. .+-||+
T Consensus 82 ~lP~~lP~------~l~pp~ 95 (95)
T 1c07_A 82 DPPHVLTP------EMIPPS 95 (95)
T ss_dssp CCCSSCCT------TTSCCC
T ss_pred CCCCcCCc------cccCCC
Confidence 99988887 566653
No 20
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=6.2e-16 Score=163.53 Aligned_cols=154 Identities=22% Similarity=0.308 Sum_probs=93.2
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
++|+|+|.+|||||||+|.|+|... +.+++.|++|+...... ..+.+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~--~~v~~~~g~T~d~~~~~-----------------~~~~~-------------- 48 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK--AIVEDEEGVTRDPVQDT-----------------VEWYG-------------- 48 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------CCSEEE-----------------EEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--ceecCCCCCccceeeEE-----------------EEECC--------------
Confidence 6799999999999999999999886 77888887776432100 00111
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
..+.++||||+.......+... +...+..++..||++|+|+|+.. +.+..+..+...+...+.|+++|+
T Consensus 49 --------~~~~l~DT~G~~~~~~~~~~~~--~~~~~~~~~~~ad~il~V~D~~~-~~~~~d~~i~~~l~~~~~p~ilv~ 117 (439)
T 1mky_A 49 --------KTFKLVDTCGVFDNPQDIISQK--MKEVTLNMIREADLVLFVVDGKR-GITKEDESLADFLRKSTVDTILVA 117 (439)
T ss_dssp --------EEEEEEECTTTTSSGGGCCCHH--HHHHHHHHHTTCSEEEEEEETTT-CCCHHHHHHHHHHHHHTCCEEEEE
T ss_pred --------eEEEEEECCCccccccchHHHH--HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEE
Confidence 3688999999975321111111 23456667899999999999986 566666666666666689999999
Q ss_pred ccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 360 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 360 NK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
||+|+....+ ......+ +. ++..++ +++||.+|.|+.+
T Consensus 118 NK~D~~~~~~-~~~~~~~-~~----lg~~~~--~~iSA~~g~gv~~ 155 (439)
T 1mky_A 118 NKAENLREFE-REVKPEL-YS----LGFGEP--IPVSAEHNINLDT 155 (439)
T ss_dssp ESCCSHHHHH-HHTHHHH-GG----GSSCSC--EECBTTTTBSHHH
T ss_pred eCCCCccccH-HHHHHHH-Hh----cCCCCE--EEEeccCCCCHHH
Confidence 9999863211 1110111 11 233333 7899999998865
No 21
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=3.5e-15 Score=157.81 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=100.4
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+|+|++|||||||+|+|+|... ..+++.|+||+.... ....+.+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~--~~v~~~~gtT~d~~~-----------------~~i~~~g------------ 227 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER--ALVSPIPGTTRDPVD-----------------DEVFIDG------------ 227 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT--EEECCCC------CC-----------------EEEEETT------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc--cccCCCCCCcCCceE-----------------EEEEECC------------
Confidence 347899999999999999999999986 678888887764320 0000111
Q ss_pred hhhcccccccccceEEcCCCCCChhh---hhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEK---QRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~---~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ 354 (547)
..+.++||||+..... +..+ .+... .+...+..+|++++++|+.. +.+.++..+...+...+.+
T Consensus 228 ----------~~~~l~Dt~G~~~~~~~~~~~~e-~~~~~-~~~~~i~~ad~vllv~d~~~-~~~~~~~~i~~~l~~~~~~ 294 (439)
T 1mky_A 228 ----------RKYVFVDTAGLRRKSRVEPRTVE-KYSNY-RVVDSIEKADVVVIVLDATQ-GITRQDQRMAGLMERRGRA 294 (439)
T ss_dssp ----------EEEEESSCSCC-----------C-CSCCH-HHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCE
T ss_pred ----------EEEEEEECCCCccccccchhhHH-HHHHH-HHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCC
Confidence 2678999999864311 1111 11111 23445789999999999987 5566666777777777899
Q ss_pred EEEEeccCCCcChHH--HHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQ--LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~--l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+....+ ..+....+...+... ...+.+++||++|.++.+
T Consensus 295 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gv~~ 344 (439)
T 1mky_A 295 SVVVFNKWDLVVHREKRYDEFTKLFREKLYFI---DYSPLIFTSADKGWNIDR 344 (439)
T ss_dssp EEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG---TTSCEEECBTTTTBSHHH
T ss_pred EEEEEECccCCCchhhHHHHHHHHHHHHhccC---CCCcEEEEECCCCCCHHH
Confidence 999999999986432 222222222222221 123447999999999875
No 22
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=99.61 E-value=1.3e-15 Score=126.54 Aligned_cols=91 Identities=32% Similarity=0.555 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcCCCCCchh
Q 008954 14 EHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAGREITSDI 93 (547)
Q Consensus 14 ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g~~~~~~~ 93 (547)
++.+.|+++|+.+|+|++|+|+.+|++.+|++.+++.+++.+||..+|.+++|.|+++||+.+|+++..+|+|.+++.+.
T Consensus 8 ~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~~~~~~ 87 (99)
T 1qjt_A 8 SGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVSLSS 87 (99)
T ss_dssp TTCTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTCCSSGGG
T ss_pred hhHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcCCCCChhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hccCCCCCCCCCCCCC
Q 008954 94 LKSGGLMENTEPPSME 109 (547)
Q Consensus 94 ~~~~~~~~~~~lp~~~ 109 (547)
+. ..+|+|++.
T Consensus 88 l~-----~~~p~p~~~ 98 (99)
T 1qjt_A 88 LS-----LAVPPPRFH 98 (99)
T ss_dssp CS-----SCCCCCSSC
T ss_pred cc-----CCCCCCCCC
Confidence 76 588999875
No 23
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.60 E-value=1.8e-15 Score=159.93 Aligned_cols=152 Identities=16% Similarity=0.252 Sum_probs=90.8
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
.++|+|+|++|+|||||+|.|+|... +.+++.|++|+...... ..+.+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~T~d~~~~~-----------------~~~~~------------- 50 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI--SIVEDTPGVTRDRIYSS-----------------AEWLN------------- 50 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC--C-----------CEEEE-----------------CTTCS-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCCccceEEEE-----------------EEECC-------------
Confidence 36899999999999999999999987 77888887776543211 11112
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
..+.++||||+...... +.. .+...+..++..||++|+|+|+.+ +.+..+.++.+.+...+.|+++|
T Consensus 51 ---------~~~~l~DT~G~~~~~~~-~~~--~~~~~~~~~~~~ad~il~vvD~~~-~~~~~d~~~~~~l~~~~~pvilv 117 (436)
T 2hjg_A 51 ---------YDFNLIDTGGIDIGDEP-FLA--QIRQQAEIAMDEADVIIFMVNGRE-GVTAADEEVAKILYRTKKPVVLA 117 (436)
T ss_dssp ---------SCCEEEC---------C-HHH--HHHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHTTCCSCEEEE
T ss_pred ---------ceEEEEECCCCCCcchh-HHH--HHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEE
Confidence 37899999999743211 111 123456667899999999999987 66777777778888888999999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+||+|+..... . . ..... ++...+ +++||.+|.|+.+
T Consensus 118 ~NK~D~~~~~~--~----~-~~~~~-lg~~~~--~~iSA~~g~gv~~ 154 (436)
T 2hjg_A 118 VNKLDNTEMRA--N----I-YDFYS-LGFGEP--YPISGTHGLGLGD 154 (436)
T ss_dssp EECCCC-------C----C-CSSGG-GSSCCC--EECBTTTTBTHHH
T ss_pred EECccCccchh--h----H-HHHHH-cCCCCe--EEEeCcCCCChHH
Confidence 99999875421 0 0 00011 122233 7999999998765
No 24
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.59 E-value=3.2e-15 Score=139.99 Aligned_cols=180 Identities=13% Similarity=0.147 Sum_probs=91.9
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEE---EEeCCCccccCCceeeecCCCCCCCccccccchh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVV---VMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFL 274 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~---i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 274 (547)
...+|+|+|++|+|||||+|+|++..+ .....|+++.... +..+... .... ........+.++...++.+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTF---HENTNTTIGASFCTYVVNLNDIN-IKNN--SNNEKNNNINSINDDNNVII 79 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCC---CSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC---CCCcCccccceeEEEEEEecCcc-cccc--cccccccccccccccccccc
Confidence 346899999999999999999999884 2333444432221 1111100 0000 00000111112211121111
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC-CCC
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG-NDD 353 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~-~~~ 353 (547)
...............+.|+||||... +......++..+|++|+|+|+.+....+....++..+.. .+.
T Consensus 80 ~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~ 148 (208)
T 3clv_A 80 TNQHNNYNENLCNIKFDIWDTAGQER-----------YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNY 148 (208)
T ss_dssp -----CCCTTTCEEEEEEEECTTGGG-----------CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCC
T ss_pred ccccccccCccceeEEEEEECCCcHH-----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 11111111111124689999999532 112456678999999999999873222333444444443 458
Q ss_pred eEEEEeccCCCcC----hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVD----TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~----~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|... .+++.... +.. .+..+++||+++.++.+
T Consensus 149 piilv~NK~D~~~~~~~~~~~~~~~--------~~~---~~~~~~~Sa~~~~~i~~ 193 (208)
T 3clv_A 149 IIILVANKIDKNKFQVDILEVQKYA--------QDN---NLLFIQTSAKTGTNIKN 193 (208)
T ss_dssp EEEEEEECTTCC-CCSCHHHHHHHH--------HHT---TCEEEEECTTTCTTHHH
T ss_pred cEEEEEECCCcccccCCHHHHHHHH--------HHc---CCcEEEEecCCCCCHHH
Confidence 9999999999321 12222111 111 23557999999988764
No 25
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=99.59 E-value=1.4e-15 Score=128.75 Aligned_cols=98 Identities=29% Similarity=0.436 Sum_probs=90.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHh
Q 008954 5 PSPITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQ 84 (547)
Q Consensus 5 ~~~~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q 84 (547)
+...|.+++++.++|+++|+.+|+|++|+|+.+|++.+|++.+++.+++.+||..+|.+++|.|+|+||+.+|+++..++
T Consensus 10 ~~~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~~~~~ 89 (110)
T 1iq3_A 10 PDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLIVARK 89 (110)
T ss_dssp CCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHH
Confidence 34468899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred cCCCCCchhhccCCCCCCCCCCCC
Q 008954 85 AGREITSDILKSGGLMENTEPPSM 108 (547)
Q Consensus 85 ~g~~~~~~~~~~~~~~~~~~lp~~ 108 (547)
+|.++|..++. .+-+|++
T Consensus 90 ~G~~lP~~LP~------~l~pp~~ 107 (110)
T 1iq3_A 90 NGYPLPEGLPP------TLQPEFI 107 (110)
T ss_dssp HTCCCCCCSSC------CSCSSCC
T ss_pred cCCCCCcccCh------hhCcCcc
Confidence 99999999887 6666654
No 26
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.59 E-value=1.3e-15 Score=152.63 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=68.0
Q ss_pred ccceEEcCCCCCChh----hhhhhcccChHHHHHHHhhcCCeEE-EEecCCCCCCCHHH-HHHHHHHhCCCCeEEEEecc
Q 008954 288 DQVTFVDTPGVLSGE----KQRTQRTYDFTGVISWFAAKCDLIL-LLFDPHKLDISDEF-KRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~----~~~~~~~~~~~~~~~~~~~~aD~il-lv~d~~~~~~~~~~-~~ll~~l~~~~~~iivVlNK 361 (547)
..+.|+||||+.... ...+.. .+...+..++..++.++ +++|+.+ +.+... ..+++.+...+.|+++|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~il~v~d~~~-~~~~~~~~~~~~~~~~~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEF--QIRDMLMQFVTKENCLILAVSPANS-DLANSDALKIAKEVDPQGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHH--HHHHHHHHHHTSTTEEEEEEEESSS-CGGGCHHHHHHHHHCTTCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCCCchHHH--HHHHHHHHHHcCCCeEEEEEecCCc-chhhhHHHHHHHHhCCCCCeEEEEEEc
Confidence 479999999997521 011110 12345666777888666 6899876 344333 35777777778999999999
Q ss_pred CCCcChHH-HHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 362 ADQVDTQQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 362 ~D~~~~~~-l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+.+... ....... .+. .........+++||++|.++++
T Consensus 202 ~Dl~~~~~~~~~~~~~---~~~-~~~~~~~~v~~~SA~~~~gi~~ 242 (299)
T 2aka_B 202 LDLMDEGTDARDVLEN---KLL-PLRRGYIGVVNRSQKDIDGKKD 242 (299)
T ss_dssp GGGSCTTCCCHHHHTT---CSS-CCTTCEEECCCCCCBCTTSCBC
T ss_pred cccCCCCchHHHHHhC---CcC-cCCCCcEEEECCChhhcccccc
Confidence 99986432 1111110 000 0111123346899999999886
No 27
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.58 E-value=2.1e-14 Score=138.02 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=94.6
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..+.|+|+|.+|+|||||+|+|++..+ .+++.+.+++...+.. ..+.+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~---~~~~~~~~t~~~~~~~-----------------~~~~~------------ 75 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANV---DVQSYSFTTKNLYVGH-----------------FDHKL------------ 75 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCE---EEECC-----CEEEEE-----------------EEETT------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCcceeeeeee-----------------eecCC------------
Confidence 457899999999999999999999874 2444444443222100 00001
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCC-C-HHHHHHHHHHhCC--CC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDI-S-DEFKRVIASLRGN--DD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~-~-~~~~~ll~~l~~~--~~ 353 (547)
..+.|+||||..+....... ...+. ....+...+|++|+|+|+++... . .....++..+... +.
T Consensus 76 ----------~~~~l~DtpG~~~~~~~~~~-~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~ 143 (228)
T 2qu8_A 76 ----------NKYQIIDTPGLLDRAFENRN-TIEMT-TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNK 143 (228)
T ss_dssp ----------EEEEEEECTTTTTSCGGGCC-HHHHH-HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CC
T ss_pred ----------CeEEEEECCCCcCcccchhh-hHHHH-HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCC
Confidence 26899999999653111000 00011 22344688899999999986322 2 3345667777665 78
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+....++..........+..... .....+.+||++|.|+++
T Consensus 144 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~ 194 (228)
T 2qu8_A 144 SIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVK-NPIKFSSFSTLTGVGVEQ 194 (228)
T ss_dssp CEEEEEECGGGCC--CCCHHHHHHHHHHHHHCC-SCEEEEECCTTTCTTHHH
T ss_pred cEEEEEeCcccCCchhhHHHHHHHHHHHHHhcC-CCceEEEEecccCCCHHH
Confidence 999999999998643322111111111122111 124458999999998764
No 28
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.58 E-value=1.2e-14 Score=132.15 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=92.5
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
.....|+++|.+|+|||||+|+|++..+ .. ..|+.+. ... . ..+.+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~--~~~t~~~-~~~------------~------~~~~~----------- 50 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEV--VT--TIPTIGF-NVE------------T------VTYKN----------- 50 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSC--CC--CCCCSSE-EEE------------E------EEETT-----------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC--CC--cCCcCcc-ceE------------E------EEECC-----------
Confidence 3457899999999999999999998875 22 2333321 110 0 00011
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----ND 352 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~ 352 (547)
..+.++||||..... .....++..+|++++++|+.+...-......+..+.. .+
T Consensus 51 -----------~~~~~~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 108 (171)
T 1upt_A 51 -----------LKFQVWDLGGLTSIR-----------PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRK 108 (171)
T ss_dssp -----------EEEEEEEECCCGGGG-----------GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTT
T ss_pred -----------EEEEEEECCCChhhh-----------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCC
Confidence 378999999985321 1123346799999999999874433344444444332 47
Q ss_pred CeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.|+++|+||+|+.+..+..++...+. . .......+..+.+||++|.++++
T Consensus 109 ~piilv~nK~Dl~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 109 AILVVFANKQDMEQAMTSSEMANSLG--L-PALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp CEEEEEEECTTSTTCCCHHHHHHHHT--G-GGCTTSCEEEEECCTTTCTTHHH
T ss_pred CEEEEEEECCCCcCCCCHHHHHHHhC--c-hhccCCceEEEECcCCCCcCHHH
Confidence 89999999999986422222222221 0 11222334568999999998764
No 29
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.58 E-value=2.7e-16 Score=155.74 Aligned_cols=154 Identities=21% Similarity=0.201 Sum_probs=99.1
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+|||||+|+|+|.. ..++..|++|....... +.+.+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~---~~v~~~~g~t~~~~~~~-----------------~~~~~------------- 49 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR---QRVGNWAGVTVERKEGQ-----------------FSTTD------------- 49 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC---EEEEECTTSSSEEEEEE-----------------EECSS-------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC---cccCCCCCeeEEEEEEE-----------------EEeCC-------------
Confidence 3679999999999999999999988 66777777665433110 00111
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHH--hhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWF--AAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~--~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
..+.++||||+.+.......... ...+++.+ ...+|++++++|+++ .+....+...+.+.+.|++
T Consensus 50 ---------~~~~liDtpG~~~~~~~~~~~~~-~e~i~~~~~~~~~~d~ii~VvD~~~---~~~~~~~~~~l~~~~~p~i 116 (274)
T 3i8s_A 50 ---------HQVTLVDLPGTYSLTTISSQTSL-DEQIACHYILSGDADLLINVVDASN---LERNLYLTLQLLELGIPCI 116 (274)
T ss_dssp ---------CEEEEEECCCCSCSCC----CCH-HHHHHHHHHHHTCCSEEEEEEEGGG---HHHHHHHHHHHHHHTCCEE
T ss_pred ---------CceEEEECcCCCccccccccCCH-HHHHHHHHHhhcCCCEEEEEecCCC---hHHHHHHHHHHHhcCCCEE
Confidence 37889999999763210000000 01233444 379999999999976 2445566667777789999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+.....+......+ .+.++ ++.+++||++|.|+++
T Consensus 117 vv~NK~Dl~~~~~~~~~~~~l----~~~lg---~~~i~~SA~~g~gi~e 158 (274)
T 3i8s_A 117 VALNMLDIAEKQNIRIEIDAL----SARLG---CPVIPLVSTRGRGIEA 158 (274)
T ss_dssp EEEECHHHHHHTTEEECHHHH----HHHHT---SCEEECCCGGGHHHHH
T ss_pred EEEECccchhhhhHHHHHHHH----HHhcC---CCEEEEEcCCCCCHHH
Confidence 999999986432211111222 12222 2458999999998765
No 30
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.58 E-value=5.8e-15 Score=138.08 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=93.5
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..++|+|+|.+|+|||||+|.|++..+ ..+...|+.+....... ..+
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~~t~~~~~~~~~-------------------~~~------------ 62 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQS--SSKHITATVGYNVETFE-------------------KGR------------ 62 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC------CCCCCSSEEEEEEE-------------------ETT------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC--cccccccccceeEEEEE-------------------eCC------------
Confidence 557899999999999999999999885 33333444432111000 001
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCC------
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGN------ 351 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~------ 351 (547)
..+.|+||||..... .....++..+|++|+|+|+.+...-......+..+...
T Consensus 63 ----------~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 121 (199)
T 4bas_A 63 ----------VAFTVFDMGGAKKFR-----------GLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRE 121 (199)
T ss_dssp ----------EEEEEEEECCSGGGG-----------GGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSB
T ss_pred ----------EEEEEEECCCCHhHH-----------HHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhc
Confidence 278999999985321 12233468999999999998743333444445544433
Q ss_pred -----CCeEEEEeccCCCcCh---HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 352 -----DDKIRVVLNKADQVDT---QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 352 -----~~~iivVlNK~D~~~~---~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+.|+++|+||+|+... +++....+. ........+..+.+||+++.++++
T Consensus 122 ~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (199)
T 4bas_A 122 LPGGGRVPFLFFANKMDAAGAKTAAELVEILDL-----TTLMGDHPFVIFASNGLKGTGVHE 178 (199)
T ss_dssp CTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTH-----HHHHTTSCEEEEECBTTTTBTHHH
T ss_pred ccccCCCCEEEEEECcCCCCCCCHHHHHHHhcc-----hhhccCCeeEEEEeeCCCccCHHH
Confidence 7899999999999865 333332221 111122344568999999998764
No 31
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.57 E-value=7.7e-15 Score=145.31 Aligned_cols=158 Identities=17% Similarity=0.185 Sum_probs=87.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCC-------CcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccc
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGP-------EPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGA 272 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~-------~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~ 272 (547)
..|+++|.+|+|||||+|+|++... ...+. .++++..... .. ....+.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~--~~~~~~~~~~~~~~t~~~~~~~-------------~~----~~~~~~------ 63 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDL--YSPEYPGPSHRIKKTVQVEQSK-------------VL----IKEGGV------ 63 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-----------------CCCEEEE-------------EE----ECC--C------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCc--cccCCCCcccccCCceEEEEEE-------------EE----EecCCe------
Confidence 5699999999999999999999885 33322 1222111110 00 000110
Q ss_pred hhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHH-------HHHhh-------------cCCeEEEEecC
Q 008954 273 FLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVI-------SWFAA-------------KCDLILLLFDP 332 (547)
Q Consensus 273 ~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~-------~~~~~-------------~aD~illv~d~ 332 (547)
.-.+.++||||+.+.... ...+..+. ..++. ++|++++++++
T Consensus 64 --------------~~~l~liDTpG~~d~~~~----~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 64 --------------QLLLTIVDTPGFGDAVDN----SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp --------------CEEEEEEECCCCSCCSCC----TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred --------------EEEEEEEECCCccccccc----hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 016899999999542100 00011111 22222 37899999877
Q ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 333 HKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 333 ~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
...+..+.+.++++.+.. +.|+++|+||+|+.+..++......+...+.. ..+..+.+|+.++.++.+
T Consensus 126 ~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~----~~i~v~~~sa~~~~~~~~ 193 (274)
T 3t5d_A 126 SGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQE----HKIKIYEFPETDDEEENK 193 (274)
T ss_dssp CCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHH----TTCCCCCC----------
T ss_pred CCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHH----cCCeEEcCCCCCChhHHH
Confidence 665678888889998887 89999999999999877766555444333322 122235678888877664
No 32
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.57 E-value=2.2e-15 Score=160.17 Aligned_cols=153 Identities=16% Similarity=0.237 Sum_probs=92.9
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..++|+|+|.+|+|||||+|+|+|... +.++..|++++...... ..+.+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~--~~v~~~~g~t~~~~~~~-----------------~~~~~------------ 70 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERI--SIVEDTPGVTRDRIYSS-----------------AEWLN------------ 70 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEE--C-----------CEEEE-----------------CTTCS------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC--cccCCCCCcceeEEEEE-----------------EEECC------------
Confidence 358999999999999999999999887 67777777766543211 11112
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
..+.++||||+.... ..... .+...+..++..+|++|+|+|+.. +.+..+.++++.+...+.|+++
T Consensus 71 ----------~~~~liDT~G~~~~~-~~~~~--~~~~~~~~~~~~ad~il~VvD~~~-~~~~~d~~l~~~l~~~~~pvil 136 (456)
T 4dcu_A 71 ----------YDFNLIDTGGIDIGD-EPFLA--QIRQQAEIAMDEADVIIFMVNGRE-GVTAADEEVAKILYRTKKPVVL 136 (456)
T ss_dssp ----------SCCEEECCCC-------CCHH--HHHHHHHHHHHHCSEEEEEEESSS-CSCHHHHHHHHHHTTCCSCEEE
T ss_pred ----------ceEEEEECCCCCCcc-hHHHH--HHHHHHHhhHhhCCEEEEEEeCCC-CCChHHHHHHHHHHHcCCCEEE
Confidence 379999999987431 11111 133456667899999999999987 6778888888888888999999
Q ss_pred EeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+||+|+....+.. . ..+. ++..++ +++||..|.|+.+
T Consensus 137 V~NK~D~~~~~~~~---~-e~~~----lg~~~~--~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 137 AVNKLDNTEMRANI---Y-DFYS----LGFGEP--YPISGTHGLGLGD 174 (456)
T ss_dssp EEECC------------C-CSGG----GSSSSE--EECCTTTCTTHHH
T ss_pred EEECccchhhhhhH---H-HHHH----cCCCce--EEeecccccchHH
Confidence 99999987432110 0 0011 122333 6899999988764
No 33
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.57 E-value=1.2e-15 Score=149.73 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=97.3
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+|||||+|+|+|.. ..++..|+++....... ..+.+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~---~~~~~~pg~tv~~~~~~-----------------~~~~~------------- 51 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK---QYVANWPGVTVEKKEGV-----------------FTYKG------------- 51 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC---EEEEECTTSCCEEEEEE-----------------EEETT-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCceEEEEEEE-----------------EEECC-------------
Confidence 3679999999999999999999987 34555555543322100 00011
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHh--hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA--AKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
..+.|+||||..+......+ ..+++.++ ..+|++++|+|+++. +....++..+.+.+.|++
T Consensus 52 ---------~~~~l~DtpG~~~~~~~~~~-----e~v~~~~~~~~~~d~ii~V~D~t~~---~~~~~~~~~l~~~~~pvi 114 (258)
T 3a1s_A 52 ---------YTINLIDLPGTYSLGYSSID-----EKIARDYLLKGDADLVILVADSVNP---EQSLYLLLEILEMEKKVI 114 (258)
T ss_dssp ---------EEEEEEECCCCSSCCSSSHH-----HHHHHHHHHHSCCSEEEEEEETTSC---HHHHHHHHHHHTTTCCEE
T ss_pred ---------eEEEEEECCCcCccCCCCHH-----HHHHHHHHhhcCCCEEEEEeCCCch---hhHHHHHHHHHhcCCCEE
Confidence 37899999999753211111 12344444 689999999999863 345567777778899999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+.....+......+ .+.++ ++.+++||++|.|+.+
T Consensus 115 lv~NK~Dl~~~~~i~~~~~~l----~~~lg---~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 115 LAMTAIDEAKKTGMKIDRYEL----QKHLG---IPVVFTSSVTGEGLEE 156 (258)
T ss_dssp EEEECHHHHHHTTCCBCHHHH----HHHHC---SCEEECCTTTCTTHHH
T ss_pred EEEECcCCCCccchHHHHHHH----HHHcC---CCEEEEEeeCCcCHHH
Confidence 999999986432211111122 22222 3457999999999875
No 34
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=99.57 E-value=7.4e-15 Score=128.69 Aligned_cols=94 Identities=33% Similarity=0.489 Sum_probs=86.6
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcCC
Q 008954 8 ITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAGR 87 (547)
Q Consensus 8 ~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g~ 87 (547)
.|.+ +++.++|+++|+.+| |++|+|++++++.+|++++++.+++.+||..+|.|++|.|+|+||+.+|+++..+++|.
T Consensus 43 ~W~~-~~e~~~l~~~F~~fD-d~dG~Is~~El~~~l~~~gl~~~el~~I~~~~D~d~dG~Ld~~EF~~am~li~~~~~G~ 120 (139)
T 2jq6_A 43 EWVV-GKDKPTYDEIFYTLS-PVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANHLIKVKLEGH 120 (139)
T ss_dssp CCGG-GGTHHHHHHHHHHSC-CSSSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHHHTTS
T ss_pred CCCC-hHHHHHHHHHHHHhC-CCCCeECHHHHHHHHHHhCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHcCC
Confidence 4655 477999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhccCCCCCCCCCCCCC
Q 008954 88 EITSDILKSGGLMENTEPPSME 109 (547)
Q Consensus 88 ~~~~~~~~~~~~~~~~~lp~~~ 109 (547)
++|..++. .+.+|+.+
T Consensus 121 ~lP~~LP~------~l~pps~r 136 (139)
T 2jq6_A 121 ELPADLPP------HLVPPSKR 136 (139)
T ss_dssp CCCSCCCT------TSSCGGGC
T ss_pred CCCcccCc------ccCCcccc
Confidence 99999887 67777654
No 35
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.56 E-value=2.5e-15 Score=137.98 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=91.9
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
.+.+|+|+|++|+|||||+|+|+|... ..+++.|+|++..... ...+.+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~--~~~~~~~~~t~~~~~~-----------------~~~~~~------------ 51 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLRE-----------------HIHIDG------------ 51 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSTTCCCSCEEE-----------------EEEETT------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ceeeCCCCceeceeeE-----------------EEEECC------------
Confidence 467899999999999999999999875 5566666665422200 000011
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ 354 (547)
..+.++||||+.... ....+ +. ...+...+..+|++++++|+++... .+...++..+. ..+.|
T Consensus 52 ----------~~~~l~Dt~G~~~~~-~~~~~-~~-~~~~~~~~~~ad~~i~v~D~~~~~s-~~~~~~~~~~~~~~~~~~p 117 (172)
T 2gj8_A 52 ----------MPLHIIDTAGLREAS-DEVER-IG-IERAWQEIEQADRVLFMVDGTTTDA-VDPAEIWPEFIARLPAKLP 117 (172)
T ss_dssp ----------EEEEEEECCCCSCCS-SHHHH-HH-HHHHHHHHHTCSEEEEEEETTTCCC-CSHHHHCHHHHHHSCTTCC
T ss_pred ----------eEEEEEECCCcccch-hHHHH-HH-HHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHHhcccCCC
Confidence 257899999996521 11110 00 0112234789999999999976332 22333433332 23689
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+..... ...+ ......+.+||+++.++++
T Consensus 118 ~ilv~NK~Dl~~~~~----------~~~~---~~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 118 ITVVRNKADITGETL----------GMSE---VNGHALIRLSARTGEGVDV 155 (172)
T ss_dssp EEEEEECHHHHCCCC----------EEEE---ETTEEEEECCTTTCTTHHH
T ss_pred EEEEEECccCCcchh----------hhhh---ccCCceEEEeCCCCCCHHH
Confidence 999999999853210 0011 1123457899999998764
No 36
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.56 E-value=5.4e-15 Score=133.15 Aligned_cols=150 Identities=18% Similarity=0.248 Sum_probs=91.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
++|+++|++|+|||||+|.|++... ..+++.++++....... ..+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~~~-------------- 48 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRS--AVVADVPGVTRDLKEGV-----------------VETDR-------------- 48 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEEEE-----------------EEETT--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCe--eeccCCCCceecceEEE-----------------EEeCC--------------
Confidence 5799999999999999999999875 44455444443211000 00001
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
..+.++||||...... ... .+.......+..+|++++++|+.+ ..+.....+...+...+.|+++|+
T Consensus 49 --------~~~~l~Dt~G~~~~~~--~~~--~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~p~ilv~ 115 (161)
T 2dyk_A 49 --------GRFLLVDTGGLWSGDK--WEK--KIQEKVDRALEDAEVVLFAVDGRA-ELTQADYEVAEYLRRKGKPVILVA 115 (161)
T ss_dssp --------EEEEEEECGGGCSSSS--CCH--HHHHHHHHHTTTCSEEEEEEESSS-CCCHHHHHHHHHHHHHTCCEEEEE
T ss_pred --------ceEEEEECCCCCCccc--hHH--HHHHHHHHHHHhCCEEEEEEECCC-cccHhHHHHHHHHHhcCCCEEEEE
Confidence 2688999999875310 000 122344556799999999999987 455555556666655678999999
Q ss_pred ccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 360 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 360 NK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
||+|+.+.++. ...+. ..+... .+.+||+++.++++
T Consensus 116 nK~Dl~~~~~~-------~~~~~-~~~~~~--~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 116 TKVDDPKHELY-------LGPLY-GLGFGD--PIPTSSEHARGLEE 151 (161)
T ss_dssp ECCCSGGGGGG-------CGGGG-GGSSCS--CEECBTTTTBSHHH
T ss_pred ECcccccchHh-------HHHHH-hCCCCC--eEEEecccCCChHH
Confidence 99999865211 01111 122222 37999999988764
No 37
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.55 E-value=2.9e-15 Score=147.91 Aligned_cols=149 Identities=19% Similarity=0.204 Sum_probs=95.9
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|++|+|||||+|+|+|.. ..++..|+++..... ..+.+ +
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~---~~v~~~pg~tv~~~~-----------------~~~~~-~------------- 48 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN---QRVGNWPGVTVERKS-----------------GLVKK-N------------- 48 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC---CCCCSSSCCCCSCEE-----------------EECTT-C-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCCcEEEEE-----------------EEEec-C-------------
Confidence 3579999999999999999999987 566666655432110 00001 1
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhh--cCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAA--KCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~--~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
..+.++||||..+-...... ..+++.++. .+|++++|+|+++. +....+...+.+.+.|++
T Consensus 49 ---------~~l~l~DtpG~~~~~~~~~~-----e~v~~~~~~~~~~d~vi~V~D~t~~---e~~~~~~~~l~~~~~p~i 111 (272)
T 3b1v_A 49 ---------KDLEIQDLPGIYSMSPYSPE-----AKVARDYLLSQRADSILNVVDATNL---ERNLYLTTQLIETGIPVT 111 (272)
T ss_dssp ---------TTEEEEECCCCSCSSCSSHH-----HHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTCSCEE
T ss_pred ---------CeEEEEECCCcCccCCCChH-----HHHHHHHHhcCCCCEEEEEecCCch---HhHHHHHHHHHhcCCCEE
Confidence 37899999998753111001 124444443 79999999999762 344556666666789999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+.....+......+ .+.++ ++.+++||++|.|+++
T Consensus 112 lv~NK~Dl~~~~~~~~~~~~l----~~~lg---~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 112 IALNMIDVLDGQGKKINVDKL----SYHLG---VPVVATSALKQTGVDQ 153 (272)
T ss_dssp EEEECHHHHHHTTCCCCHHHH----HHHHT---SCEEECBTTTTBSHHH
T ss_pred EEEEChhhCCcCCcHHHHHHH----HHHcC---CCEEEEEccCCCCHHH
Confidence 999999986432111111112 22222 2357999999999875
No 38
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.55 E-value=4.7e-14 Score=127.43 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=91.0
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECS 280 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (547)
+|+++|++|+|||||+|.|++..+ . ...||.+...... .+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~--~--~~~~t~~~~~~~~-------------------~~~~--------------- 43 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI--V--TTIPTIGFNVETV-------------------EYKN--------------- 43 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS--S--CCCCCSSCCEEEE-------------------ECSS---------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc--C--cccCcCceeEEEE-------------------EECC---------------
Confidence 699999999999999999998775 2 2233333111100 0011
Q ss_pred cccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCeEE
Q 008954 281 QMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDKIR 356 (547)
Q Consensus 281 ~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~ii 356 (547)
..+.++||||... +......++..+|++++++|..+...-+.....+..+.. .+.|++
T Consensus 44 -------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 105 (164)
T 1r8s_A 44 -------ISFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 105 (164)
T ss_dssp -------CEEEEEECCCCGG-----------GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE
T ss_pred -------EEEEEEEcCCChh-----------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEE
Confidence 2789999999853 123455668999999999999874322333444444433 378999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhh-ccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGK-VLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~-~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.......++...+ +. .........+.+||++|.++++
T Consensus 106 lv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~ 151 (164)
T 1r8s_A 106 VFANKQDLPNAMNAAEITDKL----GLHSLRHRNWYIQATCATSGDGLYE 151 (164)
T ss_dssp EEEECTTSTTCCCHHHHHHHT----TGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred EEEECcCCcCCCCHHHHHHHh----CcccccCccEEEEEcccCCCcCHHH
Confidence 999999997642211211111 11 1122234567899999988764
No 39
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=2.7e-14 Score=132.51 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=89.2
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+|||||+|+|++... ..+ .|+.+.... .. .+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~--~~t~~~~~~-------------~~------~~~~------------- 59 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEV--VHT--SPTIGSNVE-------------EI------VINN------------- 59 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSC--EEE--ECCSCSSCE-------------EE------EETT-------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC--CcC--cCCCccceE-------------EE------EECC-------------
Confidence 46799999999999999999998774 211 111110000 00 0011
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~ 354 (547)
..+.++||||..... .....++..+|++++|+|+++...-+.....+..+.. .+.|
T Consensus 60 ---------~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 119 (187)
T 1zj6_A 60 ---------TRFLMWDIGGQESLR-----------SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119 (187)
T ss_dssp ---------EEEEEEECCC----C-----------GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE
T ss_pred ---------EEEEEEECCCCHhHH-----------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe
Confidence 278999999985321 1234557899999999999874433444445554433 4789
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+.......++...+. .. .+.......+.+||++|.|+++
T Consensus 120 iilv~NK~Dl~~~~~~~~i~~~~~--~~-~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 120 LLIFANKQDVKECMTVAEISQFLK--LT-SIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHT--GG-GCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEEECCCCcCCCCHHHHHHHhC--hh-hhcCCCcEEEEccCCCCcCHHH
Confidence 999999999975311112211110 01 1122234568999999998764
No 40
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.55 E-value=2.1e-14 Score=133.43 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=92.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+|+|.+|+|||||+|.|++..+ .....|+.+...... . ..+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~---------------~----~~~------------ 66 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQF---NEDMIPTVGFNMRKI---------------T----KGN------------ 66 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC---CCSCCCCCSEEEEEE---------------E----ETT------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCC---CCccCCCCceeEEEE---------------E----eCC------------
Confidence 457899999999999999999999874 222233332211100 0 001
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~ 353 (547)
..+.|+||||.... ......++..+|++|+|+|+.+...-......+..+.. .+.
T Consensus 67 ----------~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 125 (188)
T 1zd9_A 67 ----------VTIKLWDIGGQPRF-----------RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI 125 (188)
T ss_dssp ----------EEEEEEEECCSHHH-----------HTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred ----------EEEEEEECCCCHhH-----------HHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCC
Confidence 27899999997421 12345567899999999999874333333444444432 578
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+....+..++...+ .. .......+..+.+||++|.|+++
T Consensus 126 piilv~NK~Dl~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 126 PVLVLGNKRDLPGALDEKELIEKM--NL-SAIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp CEEEEEECTTSTTCCCHHHHHHHT--TG-GGCCSSCEEEEECCTTTCTTHHH
T ss_pred CEEEEEECCCCccCCCHHHHHHHh--Ch-hhhccCCeeEEEEECCCCCCHHH
Confidence 999999999997532111211111 00 11112344568999999988764
No 41
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.54 E-value=2.6e-15 Score=136.73 Aligned_cols=149 Identities=23% Similarity=0.234 Sum_probs=88.2
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|++|+|||||+|+|+|.. ..++..|+++..... +....++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~---~~~~~~~~~t~~~~~-----------------------~~~~~~~-------- 49 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN---VYIGNWPGVTVEKKE-----------------------GEFEYNG-------- 49 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS---SSCC-----CCCCCE-----------------------EEEEETT--------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---eeccCCCCcceeeeE-----------------------EEEEECC--------
Confidence 579999999999999999999977 445555544321110 0000000
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHh--hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA--AKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
..+.++||||......... ...+...+. ..+|++++++|+.+. +....++..+.+.+.|+++
T Consensus 50 --------~~l~i~Dt~G~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~~~~p~il 113 (165)
T 2wji_A 50 --------EKFKVVDLPGVYSLTANSI-----DEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLMEMGANLLL 113 (165)
T ss_dssp --------EEEEEEECCCCSCSSSSSH-----HHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHHTTCCEEE
T ss_pred --------cEEEEEECCCcccCCCcch-----hHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHhcCCCEEE
Confidence 2689999999875210000 012333333 489999999999752 3344556666666899999
Q ss_pred EeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|.||+|+.....+......+ .+..+ ...+++||++|.++++
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~----~~~~~---~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 114 ALNKMDLAKSLGIEIDVDKL----EKILG---VKVVPLSAAKKMGIEE 154 (165)
T ss_dssp EEECHHHHHHTTCCCCHHHH----HHHHT---SCEEECBGGGTBSHHH
T ss_pred EEEchHhccccChhhHHHHH----HHHhC---CCEEEEEcCCCCCHHH
Confidence 99999985321110001111 11122 2347899999998764
No 42
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.53 E-value=2.4e-15 Score=148.66 Aligned_cols=149 Identities=21% Similarity=0.199 Sum_probs=95.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|++|+|||||+|+|+|.. ..++..|+++...... ...+.+
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~---~~~~~~~~~t~~~~~~-----------------~~~~~~-------------- 49 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR---QHVGNWPGVTVEKKEG-----------------IMEYRE-------------- 49 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC---EEEEECTTSSCEEEEE-----------------EEEETT--------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC---cccCCCCCeEEEeeEE-----------------EEEECC--------------
Confidence 579999999999999999999987 4556656555433210 000111
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHh--hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCC-CeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA--AKCDLILLLFDPHKLDISDEFKRVIASLRGND-DKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~-~~ii 356 (547)
..+.++||||+.+....... ..+++.++ ..+|++++++|+++. .....++..+.+.+ .|++
T Consensus 50 --------~~~~l~DtpG~~~~~~~~~~-----~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~~~~p~i 113 (271)
T 3k53_A 50 --------KEFLVVDLPGIYSLTAHSID-----ELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEMEVKNII 113 (271)
T ss_dssp --------EEEEEEECCCCSCCCSSCHH-----HHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTTCCSEE
T ss_pred --------ceEEEEeCCCccccccCCHH-----HHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhcCCCCEE
Confidence 26899999998753211111 11344444 789999999999862 34455666666666 9999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+............+ .+.++ ++.+++||++|.|+.+
T Consensus 114 lv~NK~Dl~~~~~~~~~~~~l----~~~lg---~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 114 LVLNKFDLLKKKGAKIDIKKM----RKELG---VPVIPTNAKKGEGVEE 155 (271)
T ss_dssp EEEECHHHHHHHTCCCCHHHH----HHHHS---SCEEECBGGGTBTHHH
T ss_pred EEEEChhcCcccccHHHHHHH----HHHcC---CcEEEEEeCCCCCHHH
Confidence 999999986432211111122 22222 2357999999998765
No 43
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.53 E-value=1.9e-14 Score=134.16 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=88.8
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+++|++|+|||||+|+|++..+ ..+.+....+...+ .+.+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~--~~~~~t~~~~~~~~---------------------~~~~------------ 66 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRL--ATLQPTWHPTSEEL---------------------AIGN------------ 66 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCC--CCCCCCCSCEEEEE---------------------EETT------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--CccccCCCCCeEEE---------------------EECC------------
Confidence 346899999999999999999999875 33322221111111 0011
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~ 353 (547)
..+.++||||..... . ....++..+|++++++|+++...-++....+..+. ..+.
T Consensus 67 ----------~~~~i~Dt~G~~~~~--~---------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 125 (190)
T 1m2o_B 67 ----------IKFTTFDLGGHIQAR--R---------LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV 125 (190)
T ss_dssp ----------EEEEEEECCCSGGGT--T---------SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred ----------EEEEEEECCCCHHHH--H---------HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCC
Confidence 278999999985421 1 12223579999999999987432233344444432 2478
Q ss_pred eEEEEeccCCCcCh---HHHHHHHHHHHHhhhhc--------cCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDT---QQLMRVYGALMWSLGKV--------LNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~---~~l~~~~~~l~~~l~~~--------~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|.||+|+... +++.+. ++.. ........+.+||++|.|+++
T Consensus 126 piilv~NK~Dl~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 181 (190)
T 1m2o_B 126 PFVILGNKIDAPNAVSEAELRSA-------LGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE 181 (190)
T ss_dssp CEEEEEECTTSTTCCCHHHHHHH-------TTCSSCCC---CCSSCCEEEEECBTTTTBSHHH
T ss_pred CEEEEEECCCCcCCCCHHHHHHH-------hCCccccccccccccceEEEEEeECCcCCCHHH
Confidence 99999999999752 222211 1111 011234568899999998764
No 44
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.53 E-value=2.1e-14 Score=132.57 Aligned_cols=149 Identities=11% Similarity=0.143 Sum_probs=90.5
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+++|.+|+|||||+|+|++..+ ..+.+....+...+ .+.+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~~~~~~~~---------------------~~~~------------ 64 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV--VHTSPTIGSNVEEI---------------------VINN------------ 64 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC--EEEECCSSSSCEEE---------------------EETT------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--CccCCcCceeeEEE---------------------EECC------------
Confidence 457899999999999999999999874 22222111111110 0011
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~ 353 (547)
..+.++||||...-. .....++..+|++++|+|+.+...-+.....+..+.. .+.
T Consensus 65 ----------~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 123 (181)
T 2h17_A 65 ----------TRFLMWDIGGQESLR-----------SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA 123 (181)
T ss_dssp ----------EEEEEEEESSSGGGT-----------CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTC
T ss_pred ----------EEEEEEECCCCHhHH-----------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCC
Confidence 278999999985321 1123346899999999999874333444444544432 578
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+.......++...+ .+. .........+.+||++|.|+++
T Consensus 124 piilv~NK~Dl~~~~~~~~i~~~~--~~~-~~~~~~~~~~~~Sa~~g~gi~~ 172 (181)
T 2h17_A 124 GLLIFANKQDVKECMTVAEISQFL--KLT-SIKDHQWHIQACCALTGEGLCQ 172 (181)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHT--TGG-GCCSSCEEEEECBTTTTBTHHH
T ss_pred eEEEEEECCCcccCCCHHHHHHHh--Ccc-cccCCceEEEEccCCCCcCHHH
Confidence 999999999997531111111111 011 1112234568999999988764
No 45
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=3.9e-14 Score=130.08 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=88.4
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|.+|+|||||+|+|++... ......|+++....... ..+.+ .
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~~t~~~~~~~~~-----------------~~~~~-----~------ 58 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAF--LAGTFISTVGIDFRNKV-----------------LDVDG-----V------ 58 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CCCCCCCCCSCEEEEEE-----------------EEETT-----E------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC--CCCCcCCceeeEEEEEE-----------------EEECC-----E------
Confidence 346899999999999999999999885 33444455543322100 00000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH---hCCCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL---RGNDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l---~~~~~~ 354 (547)
...+.++||||.... ......++..+|++++|+|+.+....+....++..+ ...+.|
T Consensus 59 ---------~~~~~~~Dt~G~~~~-----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 118 (180)
T 2g6b_A 59 ---------KVKLQMWDTAGQERF-----------RSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA 118 (180)
T ss_dssp ---------EEEEEEEECCCC-------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE
T ss_pred ---------EEEEEEEeCCCcHHH-----------HHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc
Confidence 026889999997531 122344468999999999997632112222333333 335789
Q ss_pred EEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+....++. .....+ .+..+ +..+.+||+++.++++
T Consensus 119 iilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 119 LMLLGNKVDSAHERVVKREDGEKL----AKEYG---LPFMETSAKTGLNVDL 163 (180)
T ss_dssp EEEEEECCSTTSCCCSCHHHHHHH----HHHHT---CCEEECCTTTCTTHHH
T ss_pred EEEEEECcccCcccccCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 99999999997532110 111111 11112 2347899999988764
No 46
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.53 E-value=9.9e-15 Score=138.11 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=88.6
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchh
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFL 274 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 274 (547)
.......|+|+|++|+|||||+|+|++..+ .....|+++....... ..+.+ .
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~-----~--- 67 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKF---NPSFITTIGIDFKIKT-----------------VDING-----K--- 67 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCC---CCSSSCCCSCCEEEEE-----------------EEETT-----E---
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCC---CcccCCcccceEEEEE-----------------EEECC-----E---
Confidence 344567899999999999999999999874 2333344332221100 00001 0
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH---hCC
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL---RGN 351 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l---~~~ 351 (547)
...+.|+||||.... . .....++..+|++|+|+|+.+....+....++..+ ...
T Consensus 68 ------------~~~~~l~Dt~G~~~~-----~------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~ 124 (213)
T 3cph_A 68 ------------KVKLQLWDTAGQERF-----R------TITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND 124 (213)
T ss_dssp ------------EEEEEEECCTTGGGG-----T------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT
T ss_pred ------------EEEEEEEeCCCcHHH-----H------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 026899999996421 1 12345578999999999997632112222333333 334
Q ss_pred CCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 352 DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 352 ~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+.|+++|+||+|+............+. +..+ +..+++||+++.++.+
T Consensus 125 ~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 125 EAQLLLVGNKSDMETRVVTADQGEALA----KELG---IPFIESSAKNDDNVNE 171 (213)
T ss_dssp CSEEEEEEECTTCSSCCSCHHHHHHHH----HHHT---CCEEECBTTTTBSSHH
T ss_pred CCCEEEEEECCCCcccccCHHHHHHHH----HHcC---CEEEEEeCCCCCCHHH
Confidence 789999999999853211111111121 1122 2347999999999864
No 47
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=132.80 Aligned_cols=151 Identities=19% Similarity=0.152 Sum_probs=90.5
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+|+|.+|+|||||+|+|++... ......++++ +... ...+.+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~~t~~-~~~~------------------~~~~~~------------ 66 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNA--QSQNILPTIG-FSIE------------------KFKSSS------------ 66 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGG--CCSSCCCCSS-EEEE------------------EEECSS------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCCccc-eeEE------------------EEEECC------------
Confidence 457899999999999999999998872 2222233333 2210 000111
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh-C-----C
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR-G-----N 351 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~-~-----~ 351 (547)
..+.++||||..... .....++..+|++|+|+|+.+...-......+..+. . .
T Consensus 67 ----------~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 125 (190)
T 2h57_A 67 ----------LSFTVFDMSGQGRYR-----------NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHR 125 (190)
T ss_dssp ----------CEEEEEEECCSTTTG-----------GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTS
T ss_pred ----------EEEEEEECCCCHHHH-----------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccC
Confidence 278999999975421 112334689999999999986321222223333332 2 4
Q ss_pred CCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 352 DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 352 ~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+.|+++|+||+|+.......+....+ .+.. +....+..+.+||+++.|+++
T Consensus 126 ~~piilv~nK~Dl~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 126 RIPILFFANKMDLRDAVTSVKVSQLL--CLEN-IKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp CCCEEEEEECTTSTTCCCHHHHHHHH--TGGG-CCSSCEEEEECBTTTTBTHHH
T ss_pred CCeEEEEEeCcCcccCCCHHHHHHHh--Chhh-ccCCceEEEEccCCCCcCHHH
Confidence 78999999999997542222222211 1111 122244568999999988764
No 48
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.52 E-value=4.1e-14 Score=149.31 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=102.6
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCc----------ccc--eeEEEEeCCCccccCCceeeecC-CCCCC
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEP----------TTD--RFVVVMSGPDERTIPGNTIAVHA-DLPFS 264 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~----------~T~--~~~~i~~~~~~~~~~g~~~~~~~-~~~~~ 264 (547)
....|+++|++|+|||||+|+|++... ....... .+. ....+.+.......+|++..... .+.+.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~--~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTG--MVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcC--CCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 346899999999999999999987753 2222110 010 11112222333334555552211 11111
Q ss_pred CccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCC------
Q 008954 265 GLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDIS------ 338 (547)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~------ 338 (547)
+ ..+.|+||||+.. |...+...+..+|++|+|+|+.+ +..
T Consensus 94 ~----------------------~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~-g~~e~~~~~ 139 (439)
T 3j2k_7 94 K----------------------KHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARK-GEFETGFEK 139 (439)
T ss_pred C----------------------eEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCC-CccccccCC
Confidence 1 3799999999853 22334445789999999999987 332
Q ss_pred -HHHHHHHHHHhCCCCe-EEEEeccCCCcCh----HHHHHHHHHHHHhhhhccCC---CCcEEEEecccCCCCCCC
Q 008954 339 -DEFKRVIASLRGNDDK-IRVVLNKADQVDT----QQLMRVYGALMWSLGKVLNT---PEVVRVYIGSFNDKPING 405 (547)
Q Consensus 339 -~~~~~ll~~l~~~~~~-iivVlNK~D~~~~----~~l~~~~~~l~~~l~~~~~~---~~v~~v~isa~~~~~l~~ 405 (547)
.+..+.+..+...+.| +++|+||+|+... +........+..-+ +.++. ..++.+++||++|.++.+
T Consensus 140 ~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l-~~~g~~~~~~~~~i~iSA~~G~ni~~ 214 (439)
T 3j2k_7 140 GGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFL-KKVGFNPKKDIHFMPCSGLTGANLKE 214 (439)
T ss_pred CchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHH-HHhcccccCCeeEEEeeccCCccccc
Confidence 3556666666666777 9999999999642 12222222221111 11222 245678999999999987
No 49
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=5.4e-14 Score=127.77 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=87.2
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|.+|+|||||+|+|++... .....|+.+...... . . ..+ .
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~~------------~--~----~~~-----~------- 49 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTF---RESYIPTVEDTYRQV------------I--S----CDK-----S------- 49 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCC---CSSCCCCSCEEEEEE------------E--E----ETT-----E-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCCccccEEEE------------E--E----ECC-----E-------
Confidence 35799999999999999999999774 122222222111100 0 0 000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC-----CCC
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG-----NDD 353 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~-----~~~ 353 (547)
...+.++||||.... ......++..+|++++++|..+....+....++..+.. .+.
T Consensus 50 --------~~~~~~~Dt~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 110 (172)
T 2erx_A 50 --------ICTLQITDTTGSHQF-----------PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESI 110 (172)
T ss_dssp --------EEEEEEEECCSCSSC-----------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CC
T ss_pred --------EEEEEEEECCCchhh-----------HHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 026899999997642 23455667889999999998763222222233333322 368
Q ss_pred eEEEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+.+..++.. ....+ ....+ +..+++||++|.++++
T Consensus 111 pii~v~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 111 PIMLVGNKCDESPSREVQSSEAEAL----ARTWK---CAFMETSAKLNHNVKE 156 (172)
T ss_dssp CEEEEEECGGGGGGCCSCHHHHHHH----HHHHT---CEEEECBTTTTBSHHH
T ss_pred CEEEEEEccccccccccCHHHHHHH----HHHhC---CeEEEecCCCCcCHHH
Confidence 9999999999875422111 11111 11111 3457899999998764
No 50
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.52 E-value=2.7e-14 Score=132.16 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=91.2
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|++|+|||||+|+|++... ... .|+.+ .... . ..+.+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~--~~t~~-~~~~------------~------~~~~~------------ 61 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTI--SPTLG-FNIK------------T------LEHRG------------ 61 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSC--CCCSS-EEEE------------E------EEETT------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--Ccc--cccCc-cceE------------E------EEECC------------
Confidence 457899999999999999999998763 222 22222 1110 0 00011
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~ 353 (547)
..+.++||||..... .....++..+|++++|+|+.+...-+.....+..+.. .+.
T Consensus 62 ----------~~~~~~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 120 (186)
T 1ksh_A 62 ----------FKLNIWDVGGQKSLR-----------SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA 120 (186)
T ss_dssp ----------EEEEEEEECCSHHHH-----------TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred ----------EEEEEEECCCCHhHH-----------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCC
Confidence 378999999984321 1223346899999999999874333333444444432 478
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+.+.....+....+ .+. ......+..+.+||+++.++++
T Consensus 121 piilv~nK~Dl~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~Sa~~~~gi~~ 169 (186)
T 1ksh_A 121 TLLIFANKQDLPGALSCNAIQEAL--ELD-SIRSHHWRIQGCSAVTGEDLLP 169 (186)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHT--TGG-GCCSSCEEEEECCTTTCTTHHH
T ss_pred cEEEEEeCccCCCCCCHHHHHHHh--Chh-hccCCceEEEEeeCCCCCCHHH
Confidence 999999999997642222222211 011 1112344568999999988764
No 51
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.52 E-value=4.1e-14 Score=130.77 Aligned_cols=149 Identities=17% Similarity=0.227 Sum_probs=90.8
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|++|+|||||+|+|++... ..+. |+.+ +... . ..+.+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~--~~~~--~t~g-~~~~--------------~----~~~~~------------ 59 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI--SHIT--PTQG-FNIK--------------S----VQSQG------------ 59 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC--EEEE--EETT-EEEE--------------E----EEETT------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC--Cccc--CcCC-eEEE--------------E----EEECC------------
Confidence 347899999999999999999998764 2221 1211 1110 0 00011
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~ 353 (547)
..+.++||||... +......++..+|++++++|+++...-+.....+..+. ..+.
T Consensus 60 ----------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 118 (181)
T 1fzq_A 60 ----------FKLNVWDIGGQRK-----------IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV 118 (181)
T ss_dssp ----------EEEEEEECSSCGG-----------GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTC
T ss_pred ----------EEEEEEECCCCHH-----------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCC
Confidence 2789999999753 12244556789999999999987432233333444332 2478
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|.||+|+.......+....+ .+. .........+.+||++|.|+++
T Consensus 119 piilv~NK~Dl~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 119 PVLIFANKQDLLTAAPASEIAEGL--NLH-TIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp CEEEEEECTTSTTCCCHHHHHHHT--TGG-GCCSSCEEEEECCTTTCTTHHH
T ss_pred CEEEEEECcCcccCCCHHHHHHHh--Cch-hccCCceEEEEccCCCCCCHHH
Confidence 999999999997542222211111 011 1112234567899999998764
No 52
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=99.52 E-value=8.3e-14 Score=118.19 Aligned_cols=99 Identities=28% Similarity=0.468 Sum_probs=90.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcC
Q 008954 7 PITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAG 86 (547)
Q Consensus 7 ~~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g 86 (547)
..|.+++++.+.++++|+.+|.|++|+|+.+|++.+|+..+++.+++..+|..+|.+++|.|+|+||+.+|..+..+++|
T Consensus 4 ~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~~~~~~~~~G 83 (111)
T 2kgr_A 4 AEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHLIDVAMSG 83 (111)
T ss_dssp CCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHCC
Confidence 46889999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCchhhccCCCCCCCCCCCCCCc
Q 008954 87 REITSDILKSGGLMENTEPPSMEGL 111 (547)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~lp~~~~~ 111 (547)
.++|..++. .+.+|+....
T Consensus 84 ~~lp~~lp~------~l~pps~~~~ 102 (111)
T 2kgr_A 84 QPLPPVLPP------EYIPPSFRRV 102 (111)
T ss_dssp CCCCSSCCG------GGSCTTTTCC
T ss_pred CCCccccCc------ccCCCccCCC
Confidence 999888776 5666654443
No 53
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.52 E-value=2e-14 Score=131.78 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=93.9
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..+.|+++|.+|+|||||+|+|++..+ ..+..++++.... ...+ ..++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~----------------------~~~~-~~~~------ 54 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKV---TEQEAGGITQHIG----------------------AYQV-TVND------ 54 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCS---SCSSCCSSSTTCC----------------------CCEE-EETT------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc---ccCCCCceeEeee----------------------EEEE-EeCC------
Confidence 567899999999999999999999874 2222222221000 0000 0001
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
..+.++||||...-.. . ....+..+|++++++|+.+ ....+..+.+..+...+.|+++
T Consensus 55 ----------~~~~l~Dt~G~~~~~~--~---------~~~~~~~~d~~i~v~d~~~-~~~~~~~~~l~~~~~~~~p~il 112 (178)
T 2lkc_A 55 ----------KKITFLDTPGHEAFTT--M---------RARGAQVTDIVILVVAADD-GVMPQTVEAINHAKAANVPIIV 112 (178)
T ss_dssp ----------EEEEESCCCSSSSSSC--S---------CCSSCCCCCEEEEEEETTC-CCCHHHHHHHHHHGGGSCCEEE
T ss_pred ----------ceEEEEECCCCHHHHH--H---------HHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHhCCCCEEE
Confidence 2678999999754211 0 1122578999999999877 4556667777777777899999
Q ss_pred EeccCCCcCh--HHHHHHHHHHHHhhhhccCC--CCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDT--QQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~--~~l~~~~~~l~~~l~~~~~~--~~v~~v~isa~~~~~l~~ 405 (547)
|+||+|+... +++..... ........ ..+..+++||++|.++++
T Consensus 113 v~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 160 (178)
T 2lkc_A 113 AINKMDKPEANPDRVMQELM----EYNLVPEEWGGDTIFCKLSAKTKEGLDH 160 (178)
T ss_dssp EEETTTSSCSCHHHHHHHHT----TTTCCBTTTTSSEEEEECCSSSSHHHHH
T ss_pred EEECccCCcCCHHHHHHHHH----hcCcChhHcCCcccEEEEecCCCCCHHH
Confidence 9999999853 22222111 11111110 124568999999988764
No 54
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.52 E-value=1.3e-14 Score=131.38 Aligned_cols=146 Identities=14% Similarity=0.084 Sum_probs=78.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||+|+|+|... ..+++.+.++....+.... ..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~------------------~~-------------- 48 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDG------------------EE-------------- 48 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC------------CEEEEEEEETT------------------EE--------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccc--cCCCCccccceEEEEEECC------------------EE--------------
Confidence 5799999999999999999998875 5555555444332211100 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~i 355 (547)
..+.++||||.... ......++..+|++++++|..+...-+....++..+.. .+.|+
T Consensus 49 --------~~~~i~D~~g~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 109 (166)
T 3q72_A 49 --------ASLMVYDIWEQDGG-----------RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI 109 (166)
T ss_dssp --------EEEEEEECC--------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCE
T ss_pred --------EEEEEEECCCCccc-----------hhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 26789999997532 12334456899999999999863222333344444432 37899
Q ss_pred EEEeccCCCcChHHHHHH-HHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRV-YGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~-~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+.+..++... ...+ ....+ ...+.+||++|.++++
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 110 ILVGNKSDLVRSREVSVDEGRAC----AVVFD---CKFIETSAALHHNVQA 153 (166)
T ss_dssp EEEEECTTCCSSCCSCHHHHHHH----HHHTT---CEEEECBGGGTBSHHH
T ss_pred EEEEeccccccccccCHHHHHHH----HHHhC---CcEEEeccCCCCCHHH
Confidence 999999998753211111 1111 11122 3457899999998764
No 55
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.52 E-value=1.2e-13 Score=128.20 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=91.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeE----EEEeCCCccccCCceeeecCCCCCCCccccccch
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFV----VVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAF 273 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~----~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 273 (547)
....|+|+|++|+|||||+|+|++..+ .....++.+... .+..... +-........
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-- 69 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF---NSKFITTVGIDFREKRVVYRANG---------------PDGAVGRGQR-- 69 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC---CCSCCCCCSEEEEEEEEEECTTS---------------CCCSSCCCEE--
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC---CcCcccccceeeeeEEEEEecCC---------------cccccccCcE--
Confidence 346899999999999999999999874 222233332211 1111100 0000000000
Q ss_pred hhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---
Q 008954 274 LSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG--- 350 (547)
Q Consensus 274 ~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~--- 350 (547)
..+.++||||... +......++..+|++|+|+|+.+.........++..+..
T Consensus 70 --------------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 124 (195)
T 3bc1_A 70 --------------IHLQLWDTAGLER-----------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124 (195)
T ss_dssp --------------EEEEEEEECCSGG-----------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS
T ss_pred --------------EEEEEEeCCCcHH-----------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 2789999999843 223456668899999999999763222222344444432
Q ss_pred -CCCeEEEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 351 -NDDKIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 351 -~~~~iivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.+.|+++|+||+|+....++ ......+. +..+ +..+.+||+++.++++
T Consensus 125 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~~v~~ 174 (195)
T 3bc1_A 125 SENPDIVLCGNKSDLEDQRAVKEEEARELA----EKYG---IPYFETSAANGTNISH 174 (195)
T ss_dssp SSSCCEEEEEECTTCGGGCCSCHHHHHHHH----HHHT---CCEEECCTTTCTTHHH
T ss_pred CCCCCEEEEEECcccccccccCHHHHHHHH----HHcC---CCEEEEECCCCCCHHH
Confidence 57899999999999753111 01111111 1112 2347999999988764
No 56
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.51 E-value=5.3e-15 Score=151.91 Aligned_cols=109 Identities=18% Similarity=0.168 Sum_probs=64.5
Q ss_pred ccceEEcCCCCCChhh----hhhhcccChHHHHHHHhhcC-CeEEEEecCCCCCCCHHHH-HHHHHHhCCCCeEEEEecc
Q 008954 288 DQVTFVDTPGVLSGEK----QRTQRTYDFTGVISWFAAKC-DLILLLFDPHKLDISDEFK-RVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~----~~~~~~~~~~~~~~~~~~~a-D~illv~d~~~~~~~~~~~-~ll~~l~~~~~~iivVlNK 361 (547)
..++||||||+..... ..+.. .+...+..++..+ ++|++++|+.. +....+. .+++.+...+.|+++|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~iiL~v~~a~~-~~~~~~~~~i~~~~~~~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEF--QIRDMLMQFVTKENCLILAVSPANS-DLANSDALKVAKEVDPQGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHH--HHHHHHHHHHTSTTEEEEEEEETTS-CGGGCHHHHHHHHHCTTCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCchhHHH--HHHHHHHHHHcCCCeEEEEEecCCC-ccchhHHHHHHHHhCcCCCceEEEecc
Confidence 4799999999975210 00000 1223455555444 56666777765 4443333 5788887788999999999
Q ss_pred CCCcChHH-HHHHHHHHHHhhhhccC--CCCcEEEEecccCCCCCCC
Q 008954 362 ADQVDTQQ-LMRVYGALMWSLGKVLN--TPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 362 ~D~~~~~~-l~~~~~~l~~~l~~~~~--~~~v~~v~isa~~~~~l~~ 405 (547)
+|+.+... ...... .+... ......+++||+++.++.+
T Consensus 207 ~Dl~~~~~~~~~~~~------~~~~~l~~~~~~v~~~SA~~~~~i~~ 247 (353)
T 2x2e_A 207 LDLMDEGTDARDVLE------NKLLPLRRGYIGVVNRSQKDIDGKKD 247 (353)
T ss_dssp GGGSCTTCCCHHHHT------TCSSCCTTCEEECCCCCHHHHHTTCC
T ss_pred ccccCcchhHHHHHh------CCcccccCCceEEEeCCccccccccc
Confidence 99986432 111111 11111 1122346899999998876
No 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.51 E-value=7.8e-14 Score=126.16 Aligned_cols=148 Identities=13% Similarity=0.119 Sum_probs=87.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|.+|+|||||+|+|++... .....|+++...... ..+.+ ..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~~------------------~~~~~----~~-------- 50 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRKQ------------------VEVDC----QQ-------- 50 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC---CCSCCCCSEEEEEEE------------------EESSS----CE--------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCCccceEEEE------------------EEECC----EE--------
Confidence 5799999999999999999999764 222223332211100 00000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~i 355 (547)
..+.++||||.... ......++..+|++++++|..+...-+....++..+ ...+.|+
T Consensus 51 --------~~~~l~D~~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 111 (167)
T 1c1y_A 51 --------CMLEILDTAGTEQF-----------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM 111 (167)
T ss_dssp --------EEEEEEEECSSCSS-----------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCE
T ss_pred --------EEEEEEECCChHHH-----------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcE
Confidence 26889999997532 123455678999999999987632111222222222 2347899
Q ss_pred EEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+.+..++ ......+ .+.. .....+++||++|.|+++
T Consensus 112 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~--~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 112 ILVGNKCDLEDERVVGKEQGQNL----ARQW--CNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHH----HHHT--TSCEEEECBTTTTBSHHH
T ss_pred EEEEECccccccccCCHHHHHHH----HHHc--cCCcEEEecCCCCCCHHH
Confidence 999999999753211 1111111 1112 133457999999998764
No 58
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.51 E-value=2.3e-13 Score=127.77 Aligned_cols=149 Identities=14% Similarity=0.149 Sum_probs=89.6
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+|+|.+|+|||||+|.|++..+ . ....++.+....... . .+.+ ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~--~-~~~~~t~~~~~~~~~-----------~------~~~~----~~------- 56 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSF--T-PAFVSTVGIDFKVKT-----------I------YRND----KR------- 56 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCC--C-SCCCCCCSEEEEEEE-----------E------EETT----EE-------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC--C-CCcCCccceeEEEEE-----------E------EECC----eE-------
Confidence 46799999999999999999999874 2 222222221111000 0 0000 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~~i 355 (547)
..+.|+||||... +......++..+|++|+|+|+.+....+....++..+.. .+.|+
T Consensus 57 ---------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 116 (203)
T 1zbd_A 57 ---------IKLQIWDTAGLER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQV 116 (203)
T ss_dssp ---------EEEEEEEECCSGG-----------GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEE
T ss_pred ---------EEEEEEECCCchh-----------hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 2689999999843 123455567899999999999863222233344444432 47899
Q ss_pred EEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+....++ ......+ .+..+ +..+.+||++|.++.+
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 117 LLVGNKCDMEDERVVSSERGRQL----ADHLG---FEFFEASAKDNINVKQ 160 (203)
T ss_dssp EEEEECTTCTTSCCSCHHHHHHH----HHHHT---CEEEECBTTTTBSSHH
T ss_pred EEEEECcccCcccccCHHHHHHH----HHHCC---CeEEEEECCCCCCHHH
Confidence 999999999753211 0111111 11122 2457899999999864
No 59
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.50 E-value=4.6e-14 Score=130.80 Aligned_cols=158 Identities=20% Similarity=0.180 Sum_probs=88.7
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|.+|+|||||+|+|++.. ..++..|+++..... + .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~t~~~~~------------------------~---~--------- 42 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK---VRRGKRPGVTRKIIE------------------------I---E--------- 42 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC---CSSSSSTTCTTSCEE------------------------E---E---------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC---CccCCCCCccceeEE------------------------E---e---------
Confidence 469999999999999999999987 445555544432110 0 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHH----hhcCCeEEEEecCCCCC----------CCHHHHHHH
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWF----AAKCDLILLLFDPHKLD----------ISDEFKRVI 345 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~----~~~aD~illv~d~~~~~----------~~~~~~~ll 345 (547)
...+.++||||+.............+......+ +..++++++++|+.... ....+.+++
T Consensus 43 -------~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~ 115 (190)
T 2cxx_A 43 -------WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFY 115 (190)
T ss_dssp -------ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHH
T ss_pred -------cCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHH
Confidence 026889999997532100000000011122222 45678888888875411 011122344
Q ss_pred HHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 346 ASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 346 ~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
..+...+.|+++|+||+|+.... ......+...++..........+++||++|.++++
T Consensus 116 ~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 173 (190)
T 2cxx_A 116 QFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIER 173 (190)
T ss_dssp HHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHH
T ss_pred HHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHH
Confidence 55555689999999999998653 11122222122210000012347999999998764
No 60
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=126.09 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=84.2
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|++|+|||||+|+|++... ..+.+.++++....... +.+ ..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~----~~------- 51 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQE--RDLHEQLGEDVYERTLT-------------------VDG----ED------- 51 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-------CCCSSSSEEEEEEE-------------------ETT----EE-------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCC--ccccCccccceeEEEEE-------------------ECC----EE-------
Confidence 35799999999999999999999886 44444333332211000 000 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~ 354 (547)
..+.++||||....+ +......+...+|++++++|..+...-+....++..+.. .+.|
T Consensus 52 ---------~~~~~~D~~g~~~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p 113 (175)
T 2nzj_A 52 ---------TTLVVVDTWEAEKLD---------KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP 113 (175)
T ss_dssp ---------EEEEEECCC----------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC
T ss_pred ---------EEEEEEecCCCCccc---------hhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC
Confidence 268899999985421 112345557889999999998763222233344444443 2789
Q ss_pred EEEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+.+..++.. ....+ ....+ ...+.+||++|.|+++
T Consensus 114 iilv~NK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~g~gi~~ 158 (175)
T 2nzj_A 114 IILVGNKADLARCREVSVEEGRAC----AVVFD---CKFIETSATLQHNVAE 158 (175)
T ss_dssp EEEEEECTTCTTTCCSCHHHHHHH----HHHHT---SEEEECBTTTTBSHHH
T ss_pred EEEEEEChhhccccccCHHHHHHH----HHHcC---CeEEEEecCCCCCHHH
Confidence 999999999975321111 01111 11111 3457999999998764
No 61
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.50 E-value=6.6e-14 Score=130.08 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=88.6
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
+....|+|+|.+|+|||||+|+|++..+ .. ...++.+...... .+...+.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~-~~~~t~~~~~~~~----------------------~~~~~~~----- 69 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSF--TP-AFVSTVGIDFKVK----------------------TVYRHDK----- 69 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC--CC-SCCCCCCCEEEEE----------------------EEEETTE-----
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC--CC-CcCCceeEEEEEE----------------------EEEECCe-----
Confidence 3446899999999999999999999885 21 1122222111000 0000000
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDD 353 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~ 353 (547)
...+.++||||..... .....++..+|++|+|+|+.+....+....++..+.. .+.
T Consensus 70 ----------~~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 128 (189)
T 2gf9_A 70 ----------RIKLQIWDTAGQERYR-----------TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128 (189)
T ss_dssp ----------EEEEEEEECCSCCSSC-----------CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred ----------EEEEEEEeCCCcHHHh-----------hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 0268999999975321 1123346899999999999763222223334444433 478
Q ss_pred eEEEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+....++ ......+ .+..+ +..+.+||+++.++++
T Consensus 129 piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 129 QVILVGNKCDLEDERVVPAEDGRRL----ADDLG---FEFFEASAKENINVKQ 174 (189)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHH----HHHHT---CEEEECBTTTTBSHHH
T ss_pred CEEEEEECcccccccCCCHHHHHHH----HHHcC---CeEEEEECCCCCCHHH
Confidence 99999999999753211 0111111 11122 2457999999988764
No 62
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.50 E-value=2.1e-13 Score=142.55 Aligned_cols=173 Identities=15% Similarity=0.131 Sum_probs=101.1
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|++|+|||||+|+|+|... ......+.++. .. ........+.+. +........ +
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~--~~~~~~~~~~~-~~---~~~~~~~~~~~~--~~~~~~~~~---~------- 68 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWT--SKKLGYAETNI-GV---CESCKKPEAYVT--EPSCKSCGS---D------- 68 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCC--CSSSEEEEEEE-EE---CTTSCTTTTEES--SSCCGGGTC---C-------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc--ccccCccccce-ee---ccccccccceec--ccccccccc---c-------
Confidence 346899999999999999999999764 22111111111 00 000000000000 000000000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCC-CeEE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGND-DKIR 356 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~-~~ii 356 (547)
........+.|+||||+.. |.......+..+|++|+++|+.+.....+..+.+..+...+ .|++
T Consensus 69 ----~~~~~~~~~~iiDtPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~ii 133 (403)
T 3sjy_A 69 ----DEPKFLRRISFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLI 133 (403)
T ss_dssp ----SCCEEEEEEEEEECCCCGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEE
T ss_pred ----ccccccceEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEE
Confidence 0000113789999999743 23345556789999999999987433566666666555434 4899
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~ 404 (547)
+|+||+|+.+.++....+..+...+... ....++.+++||++|.+++
T Consensus 134 vviNK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~~~ii~vSA~~g~gi~ 180 (403)
T 3sjy_A 134 IVQNKVDVVSKEEALSQYRQIKQFTKGT-WAENVPIIPVSALHKINID 180 (403)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSHH
T ss_pred EEEECccccchHHHHHHHHHHHHHHHhh-CCCCCEEEEEECCCCcChH
Confidence 9999999998766555555443322222 2234556899999998875
No 63
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.50 E-value=1.2e-13 Score=124.85 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=86.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|.+|+|||||+|+|++..+ .....++++...... . .+.+ ..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~------------~------~~~~----~~-------- 51 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF---VEDYEPTKADSYRKK------------V------VLDG----EE-------- 51 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEE------------E------EETT----EE--------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc---CCCCCCCcceEEEEE------------E------EECC----EE--------
Confidence 5799999999999999999999874 222223332221100 0 0000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~i 355 (547)
..+.++||||... +......++..+|++++++|..+....+....++..+ ...+.|+
T Consensus 52 --------~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 112 (168)
T 1u8z_A 52 --------VQIDILDTAGQED-----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 112 (168)
T ss_dssp --------EEEEEEECCC--------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCE
T ss_pred --------EEEEEEECCCcch-----------hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE
Confidence 2688999999653 1234556678999999999998632222222333332 2347899
Q ss_pred EEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+.+..++. .....+ .+..+ +..+.+||+++.++++
T Consensus 113 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 113 LLVGNKSDLEDKRQVSVEEAKNR----ADQWN---VNYVETSAKTRANVDK 156 (168)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHH----HHHHT---CEEEECCTTTCTTHHH
T ss_pred EEEEECccccccCccCHHHHHHH----HHHcC---CeEEEeCCCCCCCHHH
Confidence 9999999987532110 111111 11111 2457899999998764
No 64
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.50 E-value=3.3e-14 Score=132.53 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=89.8
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce-eEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR-FVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
....|+|+|.+|+|||||+|+|++..+ .... .++.+. +.... .. +.+ ..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~--~~~~-~~t~~~~~~~~~------------~~------~~~----~~----- 73 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEF--SHDS-RTTIGVEFSTRT------------VM------LGT----AA----- 73 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCC--CSSC-CCCSSEEEEEEE------------EE------ETT----EE-----
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC--CCCC-CCccceeEEEEE------------EE------ECC----EE-----
Confidence 346899999999999999999999885 3222 222221 11100 00 000 00
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDD 353 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~ 353 (547)
..+.|+||||.... ......++..+|++|+|+|+.+.........++..+.. .+.
T Consensus 74 -----------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~ 131 (193)
T 2oil_A 74 -----------VKAQIWDTAGLERY-----------RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATI 131 (193)
T ss_dssp -----------EEEEEEEESCCCTT-----------CTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTC
T ss_pred -----------EEEEEEeCCCchhh-----------hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 26899999998531 11345567899999999999763221222344444433 478
Q ss_pred eEEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+....++. .....+ .+.. .+..+.+||+++.++++
T Consensus 132 piilv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 132 VVMLVGNKSDLSQAREVPTEEARMF----AENN---GLLFLETSALDSTNVEL 177 (193)
T ss_dssp EEEEEEECGGGGGGCCSCHHHHHHH----HHHT---TCEEEEECTTTCTTHHH
T ss_pred eEEEEEECCCcccccccCHHHHHHH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 999999999997532110 111111 1111 23457899999988764
No 65
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.50 E-value=4.7e-14 Score=142.32 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=54.1
Q ss_pred ccceEEcCCCCCChhh----hhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCH-HHHHHHHHHhCCCCeEEEEeccC
Q 008954 288 DQVTFVDTPGVLSGEK----QRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISD-EFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~----~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~-~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
.++.|+||||+..... ..+.. .+...+..++..+|++++++|+.+.+... +...+++.+...+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQ--QIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHH--HHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHH--HHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 4799999999975211 11111 13446677789999999999874324332 23467788877889999999999
Q ss_pred CCcChH
Q 008954 363 DQVDTQ 368 (547)
Q Consensus 363 D~~~~~ 368 (547)
|+....
T Consensus 209 Dl~~~~ 214 (315)
T 1jwy_B 209 DLMDKG 214 (315)
T ss_dssp TSSCSS
T ss_pred ccCCcc
Confidence 998643
No 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.50 E-value=8.7e-14 Score=128.67 Aligned_cols=147 Identities=12% Similarity=0.151 Sum_probs=86.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|++|+|||||+|+|++..+ .....+++....... . .+.+ .
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~------------~------~~~~-----~-------- 50 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF---VDEYDPTIEDSYRKQ------------V------VIDG-----E-------- 50 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC---CCCCCTTCCEEEEEE------------E------EETT-----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCCchheEEEE------------E------EECC-----c--------
Confidence 5799999999999999999999874 222223332211100 0 0000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~i 355 (547)
...+.++||||.... ......++..+|++++++|..+....+....++..+ ...+.|+
T Consensus 51 -------~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 112 (189)
T 4dsu_A 51 -------TCLLDILDTAGQEEY-----------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112 (189)
T ss_dssp -------EEEEEEEECCCC--------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE
T ss_pred -------EEEEEEEECCCcHHH-----------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE
Confidence 025788999997532 113455678899999999997632112223333332 2347899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+............+ .+..+ ...+.+||++|.|+++
T Consensus 113 i~v~nK~Dl~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 113 VLVGNKCDLPSRTVDTKQAQDL----ARSYG---IPFIETSAKTRQGVDD 155 (189)
T ss_dssp EEEEECTTSSSCSSCHHHHHHH----HHHHT---CCEEECCTTTCTTHHH
T ss_pred EEEEECccCcccccCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 9999999997432111112222 11122 2347899999998764
No 67
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=1.1e-13 Score=125.39 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=88.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|++|+|||||+|+|++... .....|+++....... ..+.+ ..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~----~~-------- 51 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDF---AENKEPTIGAAFLTQR-----------------VTINE----HT-------- 51 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC---CTTCCCCSSEEEEEEE-----------------EEETT----EE--------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEE-----------------EEECC----EE--------
Confidence 4699999999999999999999884 2222333332111000 00000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ii 356 (547)
..+.++||||.... ......++..+|++++++|+.+....+....++..+. ..+.|++
T Consensus 52 --------~~~~~~D~~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 112 (170)
T 1ek0_A 52 --------VKFEIWDTAGQERF-----------ASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIA 112 (170)
T ss_dssp --------EEEEEEEECCSGGG-----------GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEECCCChhh-----------hhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 26899999996431 1235566789999999999987322223333343333 3478999
Q ss_pred EEeccCCCcCh---HHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDT---QQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~---~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+... .++. .....+ .+..+ ...+.+||+++.++.+
T Consensus 113 lv~nK~Dl~~~~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 158 (170)
T 1ek0_A 113 LVGNKIDXLQEGGERKVAREEGEKL----AEEKG---LLFFETSAKTGENVND 158 (170)
T ss_dssp EEEECGGGGGSSCCCCSCHHHHHHH----HHHHT---CEEEECCTTTCTTHHH
T ss_pred EEEECCCccccccccCCCHHHHHHH----HHHcC---CEEEEEeCCCCCCHHH
Confidence 99999998743 1111 111111 11111 2457899999988764
No 68
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.49 E-value=1e-13 Score=129.23 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=90.5
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+|+|++|+|||||+|+|++... .....++++....... ..+.+ .
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~-----~------- 63 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTY---TESYISTIGVDFKIRT-----------------IELDG-----K------- 63 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC---CSCCCCCSSEEEEEEE-----------------EEETT-----E-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCcccceEEEEE-----------------EEECC-----E-------
Confidence 46799999999999999999999884 3344444443222100 00000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHH---HHHhCCCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVI---ASLRGNDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll---~~l~~~~~~i 355 (547)
...+.|+||||.... ......++..+|++++++|..+...-+....++ ......+.|+
T Consensus 64 --------~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ 124 (196)
T 3tkl_A 64 --------TIKLQIWDTAGQERF-----------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK 124 (196)
T ss_dssp --------EEEEEEEEECCSGGG-----------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred --------EEEEEEEECCCcHhh-----------hhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 026889999996421 113455678999999999998632112223333 3333447899
Q ss_pred EEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+....++. .....+ ....+ +..+.+||+++.++.+
T Consensus 125 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 125 LLVGNKCDLTTKKVVDYTTAKEF----ADSLG---IPFLETSAKNATNVEQ 168 (196)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHH----HHHTT---CCEEEECTTTCTTHHH
T ss_pred EEEEECcccccccccCHHHHHHH----HHHcC---CcEEEEeCCCCCCHHH
Confidence 9999999997542111 111111 11122 2347899999998764
No 69
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.49 E-value=3.4e-14 Score=131.99 Aligned_cols=149 Identities=17% Similarity=0.138 Sum_probs=90.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|.+|+|||||+|+|++..+ .. ..|+.+..... ..+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~--~~~t~~~~~~~-------------------~~~~~------------ 65 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDV--VT--TVPTVGVNLET-------------------LQYKN------------ 65 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCC--EE--ECSSTTCCEEE-------------------EEETT------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC--CC--cCCCCceEEEE-------------------EEECC------------
Confidence 457899999999999999999987664 21 22222210000 00001
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~ 353 (547)
..+.++||||..... .. ...++..+|++++|+|+.+...-......+..+.. .+.
T Consensus 66 ----------~~~~~~Dt~G~~~~~--~~---------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 124 (189)
T 2x77_A 66 ----------ISFEVWDLGGQTGVR--PY---------WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS 124 (189)
T ss_dssp ----------EEEEEEEECCSSSSC--CC---------CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTC
T ss_pred ----------EEEEEEECCCCHhHH--HH---------HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCC
Confidence 378999999985421 11 11235799999999999874433444444444432 378
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+.......++...+. . .......+..+.+||+++.++++
T Consensus 125 piilv~nK~Dl~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 125 LLLIFANKQDLPDAASEAEIAEQLG--V-SSIMNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHTT--G-GGCCSSCEEEEECCTTTCTTHHH
T ss_pred eEEEEEECCCCcCCCCHHHHHHHhC--h-hhccCCceEEEEccCCCccCHHH
Confidence 9999999999976422222221110 0 11122234568899999988764
No 70
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=6.9e-14 Score=130.43 Aligned_cols=153 Identities=15% Similarity=0.176 Sum_probs=91.4
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchh
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFL 274 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 274 (547)
......+|+|+|.+|+|||||+|+|++.... ..+.+.++++....... .....
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~--------- 71 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFD-HNISPTIGASFMTKTVP-----------------CGNEL--------- 71 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCC-TTCCCCSSEEEEEEEEE-----------------CSSSE---------
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCCcceeEEEEEEE-----------------eCCEE---------
Confidence 3445578999999999999999999998741 12233222222111000 00000
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CC
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GN 351 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~ 351 (547)
..+.|+||||.... ......++..+|++|+|+|..+....+....++..+. ..
T Consensus 72 -------------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~ 127 (192)
T 2fg5_A 72 -------------HKFLIWDTAGQERF-----------HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE 127 (192)
T ss_dssp -------------EEEEEEEECCSGGG-----------GGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT
T ss_pred -------------EEEEEEcCCCchhh-----------HhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence 26899999996431 1134456789999999999987432233334444443 24
Q ss_pred CCeEEEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 352 DDKIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 352 ~~~iivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+.|+++|+||+|+.+..++ .+....+ .+.. ....+.+||+++.++++
T Consensus 128 ~~piiiv~NK~Dl~~~~~v~~~~~~~~----~~~~---~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 128 NIVMAIAGNKCDLSDIREVPLKDAKEY----AESI---GAIVVETSAKNAINIEE 175 (192)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHH----HHTT---TCEEEECBTTTTBSHHH
T ss_pred CCcEEEEEECcccccccccCHHHHHHH----HHHc---CCEEEEEeCCCCcCHHH
Confidence 7899999999999742111 1111112 1112 23458999999988764
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.49 E-value=8.9e-14 Score=125.26 Aligned_cols=147 Identities=13% Similarity=0.175 Sum_probs=87.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||+|.|++... . ....++++..... . . .+.+ .
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~-~~~~~~~~~~~~~-~-----------~------~~~~-----~-------- 49 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--V-DECDPTIEDSYRK-Q-----------V------VIDG-----E-------- 49 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--C-SCCCTTCCEEEEE-E-----------E------EETT-----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--c-cccCCccceEEEE-E-----------E------EECC-----E--------
Confidence 4699999999999999999999874 2 2222232211110 0 0 0000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~~i 355 (547)
...+.++||||.... ......++..+|++++++|..+....+....++..+. ..+.|+
T Consensus 50 -------~~~~~~~D~~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~ 111 (166)
T 2ce2_X 50 -------TCLLDILDTAGQEEY-----------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111 (166)
T ss_dssp -------EEEEEEEECCCCSSC-----------CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE
T ss_pred -------EEEEEEEECCCchhh-----------hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE
Confidence 025789999997531 1244556789999999999876322222333333332 237899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+............+. +..+ +..+.+||+++.++.+
T Consensus 112 iiv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 112 VLVGNKSDLAARTVESRQAQDLA----RSYG---IPYIETSAKTRQGVED 154 (166)
T ss_dssp EEEEECTTCSCCCSCHHHHHHHH----HHHT---CCEEEECTTTCTTHHH
T ss_pred EEEEEchhhhhcccCHHHHHHHH----HHcC---CeEEEecCCCCCCHHH
Confidence 99999999875311111112221 1122 2347899999988764
No 72
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.49 E-value=4.1e-14 Score=132.89 Aligned_cols=151 Identities=19% Similarity=0.193 Sum_probs=84.2
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|++|||||||+|+|.+..+ ....+....+...+ .+.+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~--~~~~~t~~~~~~~~---------------------~~~~------------- 68 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRL--GQHVPTLHPTSEEL---------------------TIAG------------- 68 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC--------CCCCCSCEEE---------------------EETT-------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC--CccCCCCCceeEEE---------------------EECC-------------
Confidence 35799999999999999999998774 22222111111111 0011
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~ 354 (547)
..+.++||||..... .....++..+|++++++|+.+...-.+....+..+.. .+.|
T Consensus 69 ---------~~l~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p 128 (198)
T 1f6b_A 69 ---------MTFTTFDLGGHIQAR-----------RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP 128 (198)
T ss_dssp ---------EEEEEEEECC----C-----------CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC
T ss_pred ---------EEEEEEECCCcHhhH-----------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc
Confidence 278999999975311 0122346799999999999874322333344444322 4789
Q ss_pred EEEEeccCCCcC---hHHHHHHHHHHHHhhhhc---cC---CCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVD---TQQLMRVYGALMWSLGKV---LN---TPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~---~~~l~~~~~~l~~~l~~~---~~---~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+.. .+++....+......++. +. ......+.+||++|.|+++
T Consensus 129 iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 188 (198)
T 1f6b_A 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188 (198)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred EEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHH
Confidence 999999999974 233222111000000000 00 1234568899999998764
No 73
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=2.4e-14 Score=131.92 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=87.3
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|++|+|||||+|.|++..+ ....+........+ .+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~t~~~~~~~~---------------------~~~~------------ 61 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV--VTTKPTIGFNVETL---------------------SYKN------------ 61 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE--EEECSSTTCCEEEE---------------------EETT------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc--CccCCcCccceEEE---------------------EECC------------
Confidence 457899999999999999999997663 22222111111000 0001
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~ 353 (547)
..+.++||||...... ....++..+|++++++|+.+...-+.....+..+. ..+.
T Consensus 62 ----------~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 120 (183)
T 1moz_A 62 ----------LKLNVWDLGGQTSIRP-----------YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120 (183)
T ss_dssp ----------EEEEEEEEC----CCT-----------TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSC
T ss_pred ----------EEEEEEECCCCHhHHH-----------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCC
Confidence 2789999999864210 12233579999999999987433344445555543 2578
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+.......++...+ ... .........+.+||++|.|+++
T Consensus 121 piilv~nK~Dl~~~~~~~~i~~~~--~~~-~~~~~~~~~~~~Sa~~~~gi~~ 169 (183)
T 1moz_A 121 ALLVFANKQDQPGALSASEVSKEL--NLV-ELKDRSWSIVASSAIKGEGITE 169 (183)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHT--TTT-TCCSSCEEEEEEBGGGTBTHHH
T ss_pred eEEEEEECCCCCCCCCHHHHHHHh--Ccc-cccCCceEEEEccCCCCcCHHH
Confidence 999999999997532111111111 001 1112234568999999998764
No 74
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.49 E-value=1.2e-13 Score=141.99 Aligned_cols=156 Identities=23% Similarity=0.298 Sum_probs=94.6
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..+.|+++|.+|||||||+|.|+|.. ..++..|.++....+.+ ....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~---~~~~~~~~~t~~~~~~~-----------------~~~~~------------ 213 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK---PEIASYPFTTRGINVGQ-----------------FEDGY------------ 213 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC---CEEECCTTCSSCEEEEE-----------------EEETT------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CccCCCCCeeeceeEEE-----------------EEecC------------
Confidence 45789999999999999999999987 44444444443222100 00001
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCC--CCHHHHHHHHHHhC--CCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLD--ISDEFKRVIASLRG--NDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~--~~~~~~~ll~~l~~--~~~ 353 (547)
..+.++||||+........+. ... .....+...+|++|+|+|++... ......+++..+.. .+.
T Consensus 214 ----------~~~~l~Dt~G~~~~~~~~~~~-~~~-~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~ 281 (357)
T 2e87_A 214 ----------FRYQIIDTPGLLDRPISERNE-IEK-QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDL 281 (357)
T ss_dssp ----------EEEEEEECTTTSSSCSTTSCH-HHH-HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTS
T ss_pred ----------ceEEEEeCCCccccchhhhhH-HHH-HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCC
Confidence 268999999997531110000 001 12223456799999999977532 12333455554443 278
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+....++....... .. . ..+.+++||++|.|+++
T Consensus 282 piilV~NK~Dl~~~~~~~~~~~~~----~~-~---~~~~~~iSA~~g~gi~~ 325 (357)
T 2e87_A 282 PFLVVINKIDVADEENIKRLEKFV----KE-K---GLNPIKISALKGTGIDL 325 (357)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHHH----HH-T---TCCCEECBTTTTBTHHH
T ss_pred CEEEEEECcccCChHHHHHHHHHH----Hh-c---CCCeEEEeCCCCcCHHH
Confidence 999999999998765543322211 11 1 12347999999999874
No 75
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.49 E-value=1.8e-14 Score=130.87 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=84.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|++|+|||||+|+|++..+ .....|+++....... ..+.+. .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~~----~-------- 51 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKF---NPSFITTIGIDFKIKT-----------------VDINGK----K-------- 51 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC---CC-------CCEEEEE-----------------EESSSC----E--------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC---CCCCCCccceeEEEEE-----------------EEECCE----E--------
Confidence 5799999999999999999999884 2233333332111000 000010 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH---hCCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL---RGNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l---~~~~~~ii 356 (547)
..+.++||||.... . .....++..+|++++++|+.+....+....++..+ ...+.|++
T Consensus 52 --------~~~~l~D~~G~~~~-----~------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 112 (170)
T 1g16_A 52 --------VKLQIWDTAGQERF-----R------TITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLL 112 (170)
T ss_dssp --------EEEEEECCTTGGGT-----S------CCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEeCCCChhh-----h------hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 26889999996321 1 12345578999999999997632112222333333 23478999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+.......+....+ .+..+ +..+.+||++|.++++
T Consensus 113 lv~nK~Dl~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gv~~ 154 (170)
T 1g16_A 113 LVGNKSDMETRVVTADQGEAL----AKELG---IPFIESSAKNDDNVNE 154 (170)
T ss_dssp EEEECTTCTTCCSCHHHHHHH----HHHHT---CCEEECBTTTTBSHHH
T ss_pred EEEECccCCcCccCHHHHHHH----HHHcC---CeEEEEECCCCCCHHH
Confidence 999999985321111111111 11122 2347999999988764
No 76
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.49 E-value=5.2e-14 Score=128.85 Aligned_cols=150 Identities=15% Similarity=0.083 Sum_probs=86.5
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|++|+|||||+|+|++... .....|+++....... ..+.+ .
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~-----~------- 54 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKF---DTQLFHTIGVEFLNKD-----------------LEVDG-----H------- 54 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC---CC----CCSEEEEEEE-----------------EEETT-----E-------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCceeeeEEEEE-----------------EEECC-----E-------
Confidence 35799999999999999999999874 2333344432221000 00000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH---hC----C
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL---RG----N 351 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l---~~----~ 351 (547)
...+.++||||.... ......++..+|++++++|..+....+....++..+ .. .
T Consensus 55 --------~~~~~i~Dt~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 115 (177)
T 1wms_A 55 --------FVTMQIWDTAGQERF-----------RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 115 (177)
T ss_dssp --------EEEEEEEECCCCGGG-----------HHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTT
T ss_pred --------EEEEEEEeCCCchhh-----------hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccC
Confidence 026899999996431 123444578999999999997632111222233322 22 5
Q ss_pred CCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 352 DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 352 ~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+.|+++|+||+|+...+...+....+ .+.. .....+.+||++|.++++
T Consensus 116 ~~p~i~v~nK~Dl~~~~~~~~~~~~~----~~~~--~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 116 SFPFVILGNKIDISERQVSTEEAQAW----CRDN--GDYPYFETSAKDATNVAA 163 (177)
T ss_dssp TSCEEEEEECTTCSSCSSCHHHHHHH----HHHT--TCCCEEECCTTTCTTHHH
T ss_pred CCcEEEEEECCcccccccCHHHHHHH----HHhc--CCceEEEEeCCCCCCHHH
Confidence 67999999999986321111111111 1111 123447999999998764
No 77
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.49 E-value=8.1e-14 Score=147.02 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=70.3
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCC-eEEEEeccCCCcC-
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDD-KIRVVLNKADQVD- 366 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~-~iivVlNK~D~~~- 366 (547)
.+.|+||||+.. |.......+..+|++|+|+|+.+ +...+..+.+..+...+. ++++|+||+|+.+
T Consensus 105 ~~~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 105 KFIIADTPGHEQ-----------YTRNMATGASTCDLAIILVDARY-GVQTQTRRHSYIASLLGIKHIVVAINKMDLNGF 172 (434)
T ss_dssp EEEEEECCCSGG-----------GHHHHHHHHTTCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTS
T ss_pred eEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcc
Confidence 689999999753 22234445799999999999987 556666666665555565 5999999999986
Q ss_pred -hHHHHHHHHHHHHhhhhccC--CCCcEEEEecccCCCCCCCC
Q 008954 367 -TQQLMRVYGALMWSLGKVLN--TPEVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 367 -~~~l~~~~~~l~~~l~~~~~--~~~v~~v~isa~~~~~l~~~ 406 (547)
.+.+......+..-+ +..+ ...+..+++||++|.++.+.
T Consensus 173 ~~~~~~~i~~~~~~~~-~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 173 DERVFESIKADYLKFA-EGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp CHHHHHHHHHHHHHHH-HTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred cHHHHHHHHHHHHHHH-HHhCCCccCceEEEEeccCCCCcccc
Confidence 233322222221111 2222 33456689999999999873
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=7.3e-14 Score=130.53 Aligned_cols=149 Identities=15% Similarity=0.201 Sum_probs=87.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|.+|+|||||+|+|++... .....|+.+...... .. +.+ ..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~------------~~------~~~----~~------ 55 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF---RDTYIPTIEDTYRQV------------IS------CDK----SV------ 55 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC---CCTTSCCCCEEEEEE------------EE------ETT----EE------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC---CCcccCccccceeEE------------EE------ECC----EE------
Confidence 346899999999999999999999774 212222222111000 00 000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCH---HHHHHHHHHhC--CC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISD---EFKRVIASLRG--ND 352 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~---~~~~ll~~l~~--~~ 352 (547)
..+.|+||||... +......++..+|++++++|..+....+ .....+..+.. .+
T Consensus 56 ----------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 114 (199)
T 2gf0_A 56 ----------CTLQITDTTGSHQ-----------FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED 114 (199)
T ss_dssp ----------EEEEEEECCGGGS-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGG
T ss_pred ----------EEEEEEeCCChHH-----------hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2689999999643 1234556678999999999987622111 22223333333 26
Q ss_pred CeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.|+++|+||+|+...+........+ ....+ +..+.+||++|.|+++
T Consensus 115 ~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 115 IPVMLVGNKCDETQREVDTREAQAV----AQEWK---CAFMETSAKMNYNVKE 160 (199)
T ss_dssp SCEEEEEECTTCSSCSSCHHHHHHH----HHHHT---CEEEECBTTTTBSHHH
T ss_pred CCEEEEEECccCCccccCHHHHHHH----HHHhC---CeEEEEecCCCCCHHH
Confidence 7999999999997531111111111 11111 2457899999998764
No 79
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.48 E-value=6.6e-14 Score=149.30 Aligned_cols=159 Identities=22% Similarity=0.237 Sum_probs=98.6
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|+.|+|||||+|+|+|... .. .+++ ......+|++.... +..+.. +.
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~--~~-----~~d~-------~~~e~~~GiTi~~~----~~~~~~-~~------- 72 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIAS--TS-----AHDK-------LPESQKRGITIDIG----FSAFKL-EN------- 72 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC----------------------------------C----CCEEEE-TT-------
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCc--cc-----cccc-------ccccccCccEEecc----eEEEEE-CC-------
Confidence 46899999999999999999998761 00 0000 00011223332111 000000 11
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
..+.|+||||+.+ |.......+..+|++|+++|+.+ +...+..+.+..+...+.|+++|
T Consensus 73 ---------~~i~iiDtPGh~~-----------~~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~~ip~Ivv 131 (482)
T 1wb1_A 73 ---------YRITLVDAPGHAD-----------LIRAVVSAADIIDLALIVVDAKE-GPKTQTGEHMLILDHFNIPIIVV 131 (482)
T ss_dssp ---------EEEEECCCSSHHH-----------HHHHHHHHTTSCCEEEEEEETTT-CSCHHHHHHHHHHHHTTCCBCEE
T ss_pred ---------EEEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEecCC-CccHHHHHHHHHHHHcCCCEEEE
Confidence 3799999999732 22345556789999999999987 56677777777777778999999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~ 404 (547)
+||+|+.+.+.+......+...+........++.+++||++|.++.
T Consensus 132 iNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~ 177 (482)
T 1wb1_A 132 ITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVD 177 (482)
T ss_dssp EECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHH
T ss_pred EECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHH
Confidence 9999999865554444444322222102224456899999998875
No 80
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.48 E-value=9.7e-14 Score=129.60 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=88.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|++|+|||||+|.|++..+ . ...||.+ +... . ..+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~--~--~~~~t~~-~~~~--------------~----~~~~~------------ 72 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI--V--TTIPTIG-FNVE--------------T----VEYKN------------ 72 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC--E--EEEEETT-EEEE--------------E----EEETT------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc--c--ccCCcCc-eeEE--------------E----EEECC------------
Confidence 457899999999999999999998764 2 1223322 1110 0 00011
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~ 353 (547)
..+.++||||.... ......++..+|++++|+|+.+...-+.....+..+.. .+.
T Consensus 73 ----------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~ 131 (192)
T 2b6h_A 73 ----------ICFTVWDVGGQDKI-----------RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA 131 (192)
T ss_dssp ----------EEEEEEECC----------------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred ----------EEEEEEECCCCHhH-----------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCC
Confidence 27899999998531 11344557899999999999874323334444544433 378
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhh-ccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGK-VLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~-~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+.......++...+ +. .........+.+||++|.++++
T Consensus 132 piilv~NK~Dl~~~~~~~~i~~~~----~~~~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 132 VLLVFANKQDMPNAMPVSELTDKL----GLQHLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHT----TGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred eEEEEEECCCCCCCCCHHHHHHHh----CcccccCCceEEEECcCCCcCCHHH
Confidence 999999999997542211211111 11 1112234567899999988764
No 81
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.48 E-value=8e-14 Score=126.22 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=87.8
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|++|+|||||+|.|++... .....|+++....... ..+.+ ..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~~-----------------~~~~~----~~------- 53 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIF---TKDYKKTIGVDFLERQ-----------------IQVND----ED------- 53 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC---CCCSSCCCSSSEEEEE-----------------EEETT----EE-------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCceEEEEEEEE-----------------EEECC----EE-------
Confidence 35799999999999999999999874 2222333322111000 00000 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC--CCCeEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG--NDDKIR 356 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~--~~~~ii 356 (547)
..+.++||||.... . .....++..+|++++++|+.+....+....++..+.. .+.|++
T Consensus 54 ---------~~~~l~Dt~G~~~~-----~------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pii 113 (168)
T 1z2a_A 54 ---------VRLMLWDTAGQEEF-----D------AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTA 113 (168)
T ss_dssp ---------EEEEEECCTTGGGT-----T------CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEE
T ss_pred ---------EEEEEEcCCCcHhH-----H------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 26899999995421 1 1234557899999999999763211222233333322 368999
Q ss_pred EEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+....++ ......+. +..+ +..+.+||+++.++++
T Consensus 114 lv~nK~Dl~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~~i~~ 156 (168)
T 1z2a_A 114 LVQNKIDLLDDSCIKNEEAEGLA----KRLK---LRFYRTSVKEDLNVSE 156 (168)
T ss_dssp EEEECGGGGGGCSSCHHHHHHHH----HHHT---CEEEECBTTTTBSSHH
T ss_pred EEEECcccCcccccCHHHHHHHH----HHcC---CeEEEEecCCCCCHHH
Confidence 99999998753211 11111111 1112 2457999999998864
No 82
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.48 E-value=3.3e-13 Score=126.79 Aligned_cols=149 Identities=16% Similarity=0.137 Sum_probs=89.4
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+|+|.+|+|||||+|+|++..+ .....++++....... .+.+ .
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~------------------~~~~-----~------ 60 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF---VEDYEPTKADSYRKKV------------------VLDG-----E------ 60 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC---CTTCCTTCCEEEEEEE------------------EETT-----E------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCccceEEEEEE------------------EECC-----E------
Confidence 346899999999999999999999874 2222233332211000 0000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~ 353 (547)
...+.|+||||.... ......++..+|++++++|..+....+....++..+. ..+.
T Consensus 61 ---------~~~~~l~Dt~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 120 (206)
T 2bov_A 61 ---------EVQIDILDTAGQEDY-----------AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 120 (206)
T ss_dssp ---------EEEEEEEECCCTTCC-----------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred ---------EEEEEEEcCCChhhh-----------HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 026889999997532 2345566789999999999986322222223333332 2478
Q ss_pred eEEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+.+..++. .....+ .+..+ +..+.+||++|.|+++
T Consensus 121 piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~g~gi~~ 166 (206)
T 2bov_A 121 PFLLVGNKSDLEDKRQVSVEEAKNR----AEQWN---VNYVETSAKTRANVDK 166 (206)
T ss_dssp CEEEEEECTTCGGGCCSCHHHHHHH----HHHHT---CEEEEECTTTCTTHHH
T ss_pred CEEEEEeccCccccccccHHHHHHH----HHHhC---CeEEEEeCCCCCCHHH
Confidence 999999999997532110 111111 11112 2457899999998764
No 83
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.48 E-value=1.9e-13 Score=125.07 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=89.3
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|.+|+|||||+|+|++... . ....++++....... . . +.+ ..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~-~~~~~t~~~~~~~~~-----------~--~----~~~----~~------ 63 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKF--M-ADCPHTIGVEFGTRI-----------I--E----VSG----QK------ 63 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--C-SSCTTSCCCCEEEEE-----------E--E----ETT----EE------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC--C-CCCCCccceEEEEEE-----------E--E----ECC----eE------
Confidence 347899999999999999999999884 2 112222221110000 0 0 000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHH---HHhCCCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIA---SLRGNDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~---~l~~~~~~ 354 (547)
..+.++||||... +......++..+|++++++|+.+....+....++. .....+.|
T Consensus 64 ----------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 122 (179)
T 1z0f_A 64 ----------IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV 122 (179)
T ss_dssp ----------EEEEEEECTTGGG-----------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE
T ss_pred ----------EEEEEEECCCChH-----------hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2689999999532 12356667899999999999986322222223333 33345789
Q ss_pred EEEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+.+..++ ......+. +.. .+..+.+||+++.++++
T Consensus 123 iilv~nK~Dl~~~~~~~~~~~~~~~----~~~---~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 123 IILIGNKADLEAQRDVTYEEAKQFA----EEN---GLLFLEASAKTGENVED 167 (179)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHH----HHT---TCEEEECCTTTCTTHHH
T ss_pred EEEEEECcccccccccCHHHHHHHH----HHc---CCEEEEEeCCCCCCHHH
Confidence 9999999999743211 01111111 111 23457999999998764
No 84
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.48 E-value=7.1e-14 Score=128.21 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=88.7
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+|||||+|+|++..+ .....++++..... . ..+.+ .
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~-~-----------------~~~~~-----~------- 55 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYF---VSDYDPTIEDSYTK-I-----------------CSVDG-----I------- 55 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC---CSSCCTTCCEEEEE-E-----------------EEETT-----E-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC---ccccCCCcCceEEE-E-----------------EEECC-----E-------
Confidence 46899999999999999999999864 22222333221110 0 00000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHH----HHHhCCCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVI----ASLRGNDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll----~~l~~~~~~ 354 (547)
...+.++||||.... ......++..+|++++++|..+....+.....+ +.....+.|
T Consensus 56 --------~~~~~~~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 116 (181)
T 2fn4_A 56 --------PARLDILDTAGQEEF-----------GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP 116 (181)
T ss_dssp --------EEEEEEEECCCTTTT-----------SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred --------EEEEEEEECCCchhh-----------HHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 026889999997531 112445578899999999998632222222333 333345789
Q ss_pred EEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+.+..++. .....+ .... .+..+.+||++|.|+++
T Consensus 117 iilv~nK~Dl~~~~~v~~~~~~~~----~~~~---~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 117 VVLVGNKADLESQRQVPRSEASAF----GASH---HVAYFEASAKLRLNVDE 161 (181)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHH----HHHT---TCEEEECBTTTTBSHHH
T ss_pred EEEEEECcccccccccCHHHHHHH----HHHc---CCeEEEecCCCCCCHHH
Confidence 99999999997532211 111111 1111 23457899999998764
No 85
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.47 E-value=2.1e-13 Score=145.85 Aligned_cols=171 Identities=19% Similarity=0.236 Sum_probs=96.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCC----------CCcccce--eEEEEeCCCccccCCceeeec-CCCCCCCc
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIG----------PEPTTDR--FVVVMSGPDERTIPGNTIAVH-ADLPFSGL 266 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~----------~~~~T~~--~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l 266 (547)
..|+++|.+|+|||||+|+|++... .... .....+. ...+.........+|++.... ..+...+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~--~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 110 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLN--IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 110 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTT--SSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS-
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC-
Confidence 5799999999999999999998742 1111 0111111 111222222223344443111 0000111
Q ss_pred cccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCC------CCHH
Q 008954 267 TTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLD------ISDE 340 (547)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~------~~~~ 340 (547)
..+.|+||||+.. |...+...+..+|++|+|+|+.+.. ...+
T Consensus 111 ---------------------~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~q 158 (483)
T 3p26_A 111 ---------------------ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQ 158 (483)
T ss_dssp ---------------------CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHH
T ss_pred ---------------------ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhh
Confidence 3789999999953 2335566689999999999998721 3456
Q ss_pred HHHHHHHHhCCC-CeEEEEeccCCCcC--hHHHHHHHHHHHHhhhhccCC--CCcEEEEecccCCCCCCCC
Q 008954 341 FKRVIASLRGND-DKIRVVLNKADQVD--TQQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 341 ~~~ll~~l~~~~-~~iivVlNK~D~~~--~~~l~~~~~~l~~~l~~~~~~--~~v~~v~isa~~~~~l~~~ 406 (547)
..+.+..+...+ .++++|+||+|+.+ .....+....+...+.+ ++. ..+..+++||++|.++.+.
T Consensus 159 t~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~-~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 159 TKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVD-IGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHH-HTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHH-cCCCcccceEEEEeeecCCCcccc
Confidence 666666666555 45999999999986 22232222222211111 121 2456689999999999873
No 86
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.47 E-value=1.6e-13 Score=125.65 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=88.1
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+|+|++|+|||||+|+|++... .....++++....... ..+.+ .
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~-----~-------- 61 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSF---DNTYQATIGIDFLSKT-----------------MYLED-----R-------- 61 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCCSEEEEEEE-----------------EEETT-----E--------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCceeeEEEEEE-----------------EEECC-----e--------
Confidence 6799999999999999999998874 2333444442221100 00000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH---hCCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL---RGNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l---~~~~~~ii 356 (547)
...+.++||||..... .....++..+|++++++|+.+....+....++..+ ...+.|++
T Consensus 62 -------~~~~~~~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 123 (179)
T 2y8e_A 62 -------TVRLQLWDTAGQERFR-----------SLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIM 123 (179)
T ss_dssp -------EEEEEEEEECCSGGGG-----------GGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEE
T ss_pred -------EEEEEEEECCCcHHHH-----------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 0268999999964311 12345578999999999997632112222333333 23478999
Q ss_pred EEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+.+..++. .....+ .+.. .+..+.+||+++.++++
T Consensus 124 lv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 124 LVGNKTDLSDKRQVSTEEGERK----AKEL---NVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEEECGGGGGGCCSCHHHHHHH----HHHH---TCEEEEEBTTTTBSHHH
T ss_pred EEEECCcccccCcCCHHHHHHH----HHHc---CCeEEEEeCCCCCCHHH
Confidence 999999997532111 111111 1111 23457899999988764
No 87
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.47 E-value=3e-13 Score=124.62 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=88.7
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+|+|++|+|||||+|+|++..+ . ....++++...... . .+.+ .
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~--~-~~~~~t~~~~~~~~------------~------~~~~-----~------- 64 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF--V-EDYEPTKADSYRKK------------V------VLDG-----E------- 64 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--C-CSCCTTCCEEEEEE------------E------EETT-----E-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--C-CcCCCccceEEEEE------------E------EECC-----E-------
Confidence 46799999999999999999999874 2 22223332211100 0 0000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~ 354 (547)
...+.|+||||.... ......++..+|++++++|..+....+....++..+ ...+.|
T Consensus 65 --------~~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 125 (187)
T 2a9k_A 65 --------EVQIDILDTAGQEDY-----------AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP 125 (187)
T ss_dssp --------EEEEEEEECCCTTCC-----------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC
T ss_pred --------EEEEEEEECCCCccc-----------HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 026889999997531 234556678999999999998632222222333322 234789
Q ss_pred EEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+.+..++. .....+ .+.. .+..+.+||+++.++++
T Consensus 126 iilv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 126 FLLVGNKSDLEDKRQVSVEEAKNR----AEQW---NVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHH----HHHT---TCEEEECCTTTCTTHHH
T ss_pred EEEEEECccccccCccCHHHHHHH----HHHc---CCeEEEeCCCCCCCHHH
Confidence 99999999987532110 111111 1111 23457899999988764
No 88
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.47 E-value=5.1e-14 Score=129.18 Aligned_cols=150 Identities=11% Similarity=0.108 Sum_probs=87.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|++|+|||||+|+|++... .....|+++....... ..+.+ .
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~-----~------ 56 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTF---SGSYITTIGVDFKIRT-----------------VEING-----E------ 56 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC------CCTTTBSEEEEEEE-----------------EEETT-----E------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC---CCccCCCceeEEEEEE-----------------EEECC-----E------
Confidence 346899999999999999999999884 3333444443222100 00000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC--CCCeE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG--NDDKI 355 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~--~~~~i 355 (547)
...+.++||||.... . .....++..+|++++|+|+.+.........++..+.. .+.|+
T Consensus 57 ---------~~~~~i~Dt~G~~~~-----~------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ 116 (181)
T 3tw8_B 57 ---------KVKLQIWDTAGQERF-----R------TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCR 116 (181)
T ss_dssp ---------EEEEEEEEETTGGGC-----S------SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred ---------EEEEEEEcCCCchhh-----h------hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE
Confidence 026889999995321 1 0122346899999999999873222223334444432 36899
Q ss_pred EEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+....... .....+ ....+ ...+.+||++|.|+++
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 117 ILVGNKNDDPERKVVETEDAYKF----AGQMG---IQLFETSAKENVNVEE 160 (181)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHH----HHHHT---CCEEECBTTTTBSHHH
T ss_pred EEEEECCCCchhcccCHHHHHHH----HHHcC---CeEEEEECCCCCCHHH
Confidence 9999999987432111 001111 11112 2347899999998764
No 89
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.47 E-value=1.6e-13 Score=123.89 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=87.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|++|+|||||+|+|++... . ....++++...... . .+.+. .
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~--~-~~~~~~~~~~~~~~------------~------~~~~~----~-------- 50 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTF--I-EKYDPTIEDFYRKE------------I------EVDSS----P-------- 50 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC--C-SCCCTTCCEEEEEE------------E------EETTE----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC--c-ccCCCCcceeEEEE------------E------EECCE----E--------
Confidence 5799999999999999999998874 2 22223333221100 0 00000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHH----HHhCCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIA----SLRGNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~----~l~~~~~~i 355 (547)
..+.++||||.... ......++..+|++++++|..+....+.....+. .....+.|+
T Consensus 51 --------~~~~l~D~~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 111 (167)
T 1kao_A 51 --------SVLEILDTAGTEQF-----------ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV 111 (167)
T ss_dssp --------EEEEEEECCCTTCC-----------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCE
T ss_pred --------EEEEEEECCCchhh-----------HHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 25889999997532 2345556789999999999986322222222332 223357899
Q ss_pred EEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+.+..++. .....+ .+..+ ...+.+||++|.++++
T Consensus 112 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 112 ILVGNKVDLESEREVSSSEGRAL----AEEWG---CPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHH----HHHHT---SCEEEECTTCHHHHHH
T ss_pred EEEEECCcccccccCCHHHHHHH----HHHhC---CCEEEecCCCCcCHHH
Confidence 9999999987532211 111111 11122 2347899999887653
No 90
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.47 E-value=1.3e-13 Score=128.34 Aligned_cols=149 Identities=13% Similarity=0.165 Sum_probs=86.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccc-eeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTD-RFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~-~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
...+|+|+|.+|+|||||+|.|++... ... ..++++ .+.... . .+.+ .
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~-~~~t~~~~~~~~~------------~------~~~~-----~----- 68 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRF--QPV-HDLTIGVEFGARM------------V------NIDG-----K----- 68 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCC--CC------CCSSEEEEE------------E------EETT-----E-----
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC--CCC-CCCcccceeEEEE------------E------EECC-----E-----
Confidence 446899999999999999999999885 222 222222 111100 0 0000 0
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDD 353 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~ 353 (547)
...+.|+||||...- . .....++..+|++|+|+|..+....+....++..+. ..+.
T Consensus 69 ----------~~~~~i~Dt~G~~~~-----~------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~ 127 (191)
T 2a5j_A 69 ----------QIKLQIWDTAGQESF-----R------SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM 127 (191)
T ss_dssp ----------EEEEEEECCTTGGGT-----S------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred ----------EEEEEEEECCCchhh-----h------hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 026899999996421 1 123455789999999999976322222233443433 3478
Q ss_pred eEEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+.+..++. .....+. +.. .+..+.+||+++.++++
T Consensus 128 piilv~nK~Dl~~~~~v~~~~~~~~~----~~~---~~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 128 VIMLIGNKSDLESRRDVKREEGEAFA----REH---GLIFMETSAKTACNVEE 173 (191)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHHH----HHH---TCEEEEECTTTCTTHHH
T ss_pred CEEEEEECcccCCccccCHHHHHHHH----HHc---CCEEEEEeCCCCCCHHH
Confidence 999999999996431110 1111111 111 12457899999988764
No 91
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.47 E-value=1.9e-13 Score=127.49 Aligned_cols=151 Identities=16% Similarity=0.234 Sum_probs=87.4
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+|+|.+|+|||||+|+|++... . ....++.+....... ..+.+ .
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~-~~~~~t~~~~~~~~~-----------------~~~~~-----~------ 73 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTF--C-EACKSTVGVDFKIKT-----------------VELRG-----K------ 73 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC-----------CCTTEEEEEEE-----------------EEETT-----E------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC--C-cCCCCccceeEEEEE-----------------EEECC-----e------
Confidence 346799999999999999999998874 2 222333322111000 00000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH---HHHHHHhCCCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK---RVIASLRGNDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~---~ll~~l~~~~~~ 354 (547)
...+.++||||... +......++..+|++|+|+|+.+....+... +.+......+.|
T Consensus 74 ---------~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p 133 (192)
T 2il1_A 74 ---------KIRLQIWDTAGQER-----------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE 133 (192)
T ss_dssp ---------EEEEEEEEECCSGG-----------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE
T ss_pred ---------EEEEEEEeCCCcHH-----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 02689999999642 2234566678999999999998632111122 233344445789
Q ss_pred EEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+....++. .....+ .+.+ .....+.+||++|.++++
T Consensus 134 iilV~NK~Dl~~~~~v~~~~~~~~----~~~~--~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 134 LLLVGNKLDCETDREITRQQGEKF----AQQI--TGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHH----HHTS--TTCEEEECBTTTTBSHHH
T ss_pred EEEEEECcccccccccCHHHHHHH----HHhc--CCCeEEEEeCCCCCCHHH
Confidence 99999999987532211 111112 1211 123457899999998764
No 92
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.47 E-value=4.3e-13 Score=123.80 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=89.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+|+|++|+|||||+|.|++... .....++++....... ..+.+ .
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~-----~------ 57 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKF---KDDSNHTIGVEFGSKI-----------------INVGG-----K------ 57 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC---CTTCCCCSEEEEEEEE-----------------EEETT-----E------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC---CCCCCCccceEEEEEE-----------------EEECC-----E------
Confidence 346899999999999999999999884 2233333332111000 00000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHH---HHHhCCCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVI---ASLRGNDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll---~~l~~~~~~ 354 (547)
...+.++||||.... ......++..+|++++++|+.+....+....++ ..+...+.|
T Consensus 58 ---------~~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 117 (186)
T 2bme_A 58 ---------YVKLQIWDTAGQERF-----------RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV 117 (186)
T ss_dssp ---------EEEEEEEEECCSGGG-----------HHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE
T ss_pred ---------EEEEEEEeCCCcHHH-----------HHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 026889999996431 224455578999999999998632212222233 333345789
Q ss_pred EEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+....++. .....+ .+.. .+..+.+||+++.++.+
T Consensus 118 iilv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 118 IILCGNKKDLDADREVTFLEASRF----AQEN---ELMFLETSALTGENVEE 162 (186)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHH----HHHT---TCEEEECCTTTCTTHHH
T ss_pred EEEEEECcccccccccCHHHHHHH----HHHc---CCEEEEecCCCCCCHHH
Confidence 99999999996432110 001111 1111 23557899999998764
No 93
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.47 E-value=3.3e-13 Score=122.33 Aligned_cols=148 Identities=17% Similarity=0.222 Sum_probs=88.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|++|+|||||+|+|++.... ....+.++++....... +.+ ..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~-------------------~~~----~~-------- 54 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFD-PNINPTIGASFMTKTVQ-------------------YQN----EL-------- 54 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEE-------------------ETT----EE--------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEE-------------------ECC----eE--------
Confidence 57999999999999999999998841 11122222111111000 000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ii 356 (547)
..+.++||||.... ......++..+|++++++|+.+....+....++..+. ....|++
T Consensus 55 --------~~~~~~Dt~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~ii 115 (170)
T 1z0j_A 55 --------HKFLIWDTAGLERF-----------RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 115 (170)
T ss_dssp --------EEEEEEEECCSGGG-----------GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEE
T ss_pred --------EEEEEEcCCCchhh-----------hcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 26899999998431 1234556789999999999986322233333444443 3467899
Q ss_pred EEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.+..++ .+....+ .+..+ ...+.+||+++.++++
T Consensus 116 lv~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 116 IAGNKCDLTDVREVMERDAKDY----ADSIH---AIFVETSAKNAININE 158 (170)
T ss_dssp EEEECTTCGGGCCSCHHHHHHH----HHHTT---CEEEECBTTTTBSHHH
T ss_pred EEEECCccccccccCHHHHHHH----HHHcC---CEEEEEeCCCCcCHHH
Confidence 99999999753221 1111111 11122 3457999999988764
No 94
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.46 E-value=3.2e-13 Score=124.04 Aligned_cols=148 Identities=13% Similarity=0.190 Sum_probs=88.6
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce-eEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR-FVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...|+++|.+|+|||||+|+|++... . ....++.+. +.... . .+.+ ..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~--~-~~~~~~~~~~~~~~~------------~------~~~~----~~------ 60 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQF--V-EFQESTIGAAFFSQT------------L------AVND----AT------ 60 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCC--T-TTSCCCSCCSEEEEE------------E------EETT----EE------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC--C-CcCCCCceeEEEEEE------------E------EECC----EE------
Confidence 36799999999999999999999885 2 222222221 11100 0 0000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC---CCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG---NDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~---~~~~ 354 (547)
..+.|+||||.... ......++..+|++|+++|+.+....+....++..+.. .+.|
T Consensus 61 ----------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 119 (181)
T 2efe_B 61 ----------VKFEIWDTAGQERY-----------HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV 119 (181)
T ss_dssp ----------EEEEEEECCCSGGG-----------GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE
T ss_pred ----------EEEEEEeCCCChhh-----------hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 26899999996431 11344557899999999999763222333444444432 3788
Q ss_pred EEEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+.+..++ ......+ .+.. .+..+.+||++|.++++
T Consensus 120 ~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 120 MALAGNKSDLLDARKVTAEDAQTY----AQEN---GLFFMETSAKTATNVKE 164 (181)
T ss_dssp EEEEEECTTCTTTCCSCHHHHHHH----HHHT---TCEEEECCSSSCTTHHH
T ss_pred EEEEEECCcccccccCCHHHHHHH----HHHc---CCEEEEEECCCCCCHHH
Confidence 9999999999753211 0111111 1111 23457999999988764
No 95
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.46 E-value=2.8e-14 Score=140.03 Aligned_cols=126 Identities=14% Similarity=0.182 Sum_probs=78.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcc-cceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPT-TDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~-T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
....|+|+|++|||||||+|+|+|... ..++..|+ +++...... ..+.+
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~--~~~~~~~~~~t~~~~~~~-----------------~~~~~----------- 70 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQA--FESKLGSQTLTKTCSKSQ-----------------GSWGN----------- 70 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCC--SCCCTTSCCCCCSCEEEE-----------------EEETT-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCceeeeeEEEE-----------------EEeCC-----------
Confidence 346899999999999999999999885 44444443 332211000 00011
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhccc-ChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCC----
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTY-DFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGN---- 351 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~-~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~---- 351 (547)
..+.|+||||+.+... ...+.+ .+...+...+..+|++|+|+|+.+ .......+++.+...
T Consensus 71 -----------~~i~iiDTpG~~~~~~-~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~ 136 (260)
T 2xtp_A 71 -----------REIVIIDTPDMFSWKD-HCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGED 136 (260)
T ss_dssp -----------EEEEEEECCGGGGSSC-CCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGG
T ss_pred -----------CEEEEEECcCCCCCCC-CHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCch
Confidence 3799999999875321 011000 011223345689999999999985 455555555555432
Q ss_pred -CCeEEEEec-cCCCcCh
Q 008954 352 -DDKIRVVLN-KADQVDT 367 (547)
Q Consensus 352 -~~~iivVlN-K~D~~~~ 367 (547)
..|.++|+| |+|+...
T Consensus 137 ~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 137 AMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp GGGGEEEEEECGGGGTTC
T ss_pred hhccEEEEEEcccccCCc
Confidence 457777777 9999743
No 96
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.46 E-value=1.5e-13 Score=124.79 Aligned_cols=149 Identities=18% Similarity=0.186 Sum_probs=85.8
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|.+|+|||||+|+|++... .....|+++....... ..+.+. .
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~~~-----------------~~~~~~----~------- 54 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKF---NDKHITTLGASFLTKK-----------------LNIGGK----R------- 54 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCC---CSSCCCCCSCEEEEEE-----------------EESSSC----E-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC---CcCCCCccceEEEEEE-----------------EEECCE----E-------
Confidence 35799999999999999999999874 2223333332211000 000000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~i 355 (547)
..+.++||||..... .....++..+|++++++|..+....+....++..+. ..+.|+
T Consensus 55 ---------~~l~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 114 (170)
T 1z08_A 55 ---------VNLAIWDTAGQERFH-----------ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICL 114 (170)
T ss_dssp ---------EEEEEEECCCC------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEE
T ss_pred ---------EEEEEEECCCcHhhh-----------hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeE
Confidence 268899999975321 122233679999999999976322222333333332 346899
Q ss_pred EEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+.+..++. +....+ .+..+ ...+.+||++|.++++
T Consensus 115 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 115 CIVGNKIDLEKERHVSIQEAESY----AESVG---AKHYHTSAKQNKGIEE 158 (170)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHH----HHHTT---CEEEEEBTTTTBSHHH
T ss_pred EEEEECcccccccccCHHHHHHH----HHHcC---CeEEEecCCCCCCHHH
Confidence 9999999997532110 111111 11122 3457899999998764
No 97
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.46 E-value=5.7e-13 Score=126.24 Aligned_cols=115 Identities=17% Similarity=0.305 Sum_probs=71.8
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeE-EEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFV-VVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~-~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..+|+++|.+|+|||||+|+|++..+ ... .++++... .+..+.. .+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~--~~~--~~~~~~~~~~~~~~~~-----------------~~------------ 53 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY--RDT--QTSITDSSAIYKVNNN-----------------RG------------ 53 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC--CCB--CCCCSCEEEEEECSST-----------------TC------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc--ccc--cCCcceeeEEEEecCC-----------------Cc------------
Confidence 46899999999999999999999875 222 22222211 1110000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHH-HHHHHhhcCCeEEEEecCCCCCC-CHHHHHHHHHH------h
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTG-VISWFAAKCDLILLLFDPHKLDI-SDEFKRVIASL------R 349 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~-~~~~~~~~aD~illv~d~~~~~~-~~~~~~ll~~l------~ 349 (547)
..+.++||||...- .. ....+...+|++|+|+|+.+... .....+.+..+ .
T Consensus 54 ----------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (214)
T 2fh5_B 54 ----------NSLTLIDLPGHESL-----------RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMAL 112 (214)
T ss_dssp ----------CEEEEEECCCCHHH-----------HHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ----------cEEEEEECCCChhH-----------HHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhc
Confidence 26899999998531 11 34556789999999999975210 11122222221 1
Q ss_pred CCCCeEEEEeccCCCcCh
Q 008954 350 GNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 350 ~~~~~iivVlNK~D~~~~ 367 (547)
..+.|+++|.||+|+...
T Consensus 113 ~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 113 KNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp TTCCEEEEEEECTTSTTC
T ss_pred ccCCCEEEEEECCCCCCc
Confidence 346899999999999754
No 98
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.46 E-value=8.5e-13 Score=121.01 Aligned_cols=139 Identities=15% Similarity=0.201 Sum_probs=85.2
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|.+|+|||||+|.|++..+ .. ..|+++..... ... +.+ .
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~--~~--~~~t~~~~~~~------------~~~------~~~-----~------- 52 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSY--QV--LEKTESEQYKK------------EML------VDG-----Q------- 52 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCC--CC--CSSCSSSEEEE------------EEE------ETT-----E-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC--CC--cCCCcceeEEE------------EEE------ECC-----E-------
Confidence 36799999999999999999999885 32 23333322110 000 000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHH---HHHHHhC---CC
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKR---VIASLRG---ND 352 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~---ll~~l~~---~~ 352 (547)
...+.++||||... ..++..+|++|+|+|.++...-+.... .+..+.. .+
T Consensus 53 --------~~~l~i~Dt~G~~~----------------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~ 108 (178)
T 2iwr_A 53 --------THLVLIREEAGAPD----------------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGG 108 (178)
T ss_dssp --------EEEEEEEECSSSCC----------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred --------EEEEEEEECCCCch----------------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 02688999999753 123578999999999986322222223 2333333 36
Q ss_pred CeEEEEeccCCCc-------ChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQV-------DTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~-------~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.|+++|.||+|+. ..++....... . .....+.+||++|.++++
T Consensus 109 ~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~--------~--~~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 109 LALALVGTQDRISASSPRVVGDARARALXAD--------M--KRCSYYETXATYGLNVDR 158 (178)
T ss_dssp CEEEEEEECTTCBTTBCCCSCHHHHHHHHHH--------H--SSEEEEEEBTTTTBTHHH
T ss_pred CCEEEEEECccccccccCcCCHHHHHHHHHh--------h--cCCeEEEEeccccCCHHH
Confidence 8999999999983 22222221111 1 123457899999988764
No 99
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=139.00 Aligned_cols=181 Identities=15% Similarity=0.127 Sum_probs=102.4
Q ss_pred HHHHHHHhhchhhhhhhccCCccccccCCC-------CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce
Q 008954 165 GLKRLYSEKLKPLEATYRFNDFVSPFLTNS-------DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR 237 (547)
Q Consensus 165 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~ 237 (547)
.....|..++..+.....+....++..... .-....+|+|+|.+|+|||||+|.|++..+ . ...||.+.
T Consensus 124 ~~A~lYr~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~--~--~~~pT~~~ 199 (329)
T 3o47_A 124 RAAALFRDKVVALAEGREWSLESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEI--V--TTIPTIGF 199 (329)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSCC-----CCCCC------CCSEEEEEEESTTSSHHHHHHHTCSSCC--E--EEEEETTE
T ss_pred hHHHHHhhhccccccCCccccccccccccCCCCcccccccCcceEEEECCCCccHHHHHHHHhCCCC--C--Ccccccce
Confidence 344567776666554433333222211110 011335899999999999999999998774 1 22333332
Q ss_pred eEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHH
Q 008954 238 FVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVIS 317 (547)
Q Consensus 238 ~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~ 317 (547)
...... +.+ ..+.|+||||...- .....
T Consensus 200 ~~~~~~-------------------~~~----------------------~~l~i~Dt~G~~~~-----------~~~~~ 227 (329)
T 3o47_A 200 NVETVE-------------------YKN----------------------ISFTVWDVGGQDKI-----------RPLWR 227 (329)
T ss_dssp EEEEEE-------------------ETT----------------------EEEEEEECC----------------CCSHH
T ss_pred EEEEEe-------------------cCc----------------------EEEEEEECCCCHhH-----------HHHHH
Confidence 211100 011 27899999995321 11345
Q ss_pred HHhhcCCeEEEEecCCCCCCCHHHHHHHHHH-hC---CCCeEEEEeccCCCcChHHHHHHHHHHHHhhhh-ccCCCCcEE
Q 008954 318 WFAAKCDLILLLFDPHKLDISDEFKRVIASL-RG---NDDKIRVVLNKADQVDTQQLMRVYGALMWSLGK-VLNTPEVVR 392 (547)
Q Consensus 318 ~~~~~aD~illv~d~~~~~~~~~~~~ll~~l-~~---~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~-~~~~~~v~~ 392 (547)
.++..+|++|+|+|+++...-......+..+ .. .+.|+++|+||+|+.+.....++...+ +. ......+..
T Consensus 228 ~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~----~~~~~~~~~~~~ 303 (329)
T 3o47_A 228 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL----GLHSLRHRNWYI 303 (329)
T ss_dssp HHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHH----TCTTCCSSCEEE
T ss_pred HHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHh----chhhhhcCCCEE
Confidence 5678999999999998744333434344333 32 378999999999997543222222222 11 112234556
Q ss_pred EEecccCCCCCCC
Q 008954 393 VYIGSFNDKPING 405 (547)
Q Consensus 393 v~isa~~~~~l~~ 405 (547)
+.+||++|.|+++
T Consensus 304 ~~vSAk~g~gi~e 316 (329)
T 3o47_A 304 QATCATSGDGLYE 316 (329)
T ss_dssp EECBTTTTBTHHH
T ss_pred EEEECCCCcCHHH
Confidence 8999999998764
No 100
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.46 E-value=3.2e-14 Score=148.55 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=95.1
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+|+|.+|+|||||+|+|++..+ +.++..++|+....... ..+.+ .
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~--~~~~~~~gtT~d~~~~~-----------------~~~~~-----~------ 82 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNV--SIVSDYAGTTTDPVYKS-----------------MELHP-----I------ 82 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEE-----------------EEETT-----T------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCC--CccCCCCCeeeeeEEEE-----------------EEECC-----C------
Confidence 457899999999999999999999886 56666665543211000 00000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
..+.|+||||+.+.. .+. .. ....+...+..+|++|+|+|+ +......+++..+.+.+.|+++
T Consensus 83 ----------~~l~liDTpG~~d~~--~l~-~~-~~~~~~~~l~~aD~vllVvD~---~~~~~~~~~l~~l~~~~~piIv 145 (423)
T 3qq5_A 83 ----------GPVTLVDTPGLDDVG--ELG-RL-RVEKARRVFYRADCGILVTDS---APTPYEDDVVNLFKEMEIPFVV 145 (423)
T ss_dssp ----------EEEEEEECSSTTCCC--TTC-CC-CHHHHHHHHTSCSEEEEECSS---SCCHHHHHHHHHHHHTTCCEEE
T ss_pred ----------CeEEEEECcCCCccc--chh-HH-HHHHHHHHHhcCCEEEEEEeC---CChHHHHHHHHHHHhcCCCEEE
Confidence 268999999997531 111 11 123456678999999999998 3456677888888888999999
Q ss_pred EeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+||+|+.+.... +... .+.+..+ +..+++||++|.++++
T Consensus 146 V~NK~Dl~~~~~~-~~~~----~l~~~~g---~~v~~vSAktg~gI~e 185 (423)
T 3qq5_A 146 VVNKIDVLGEKAE-ELKG----LYESRYE---AKVLLVSALQKKGFDD 185 (423)
T ss_dssp ECCCCTTTTCCCT-HHHH----HSSCCTT---CCCCCCSSCCTTSTTT
T ss_pred EEeCcCCCCccHH-HHHH----HHHHHcC---CCEEEEECCCCCCHHH
Confidence 9999999865322 1111 1222222 2347899999999886
No 101
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.46 E-value=5.5e-14 Score=144.39 Aligned_cols=156 Identities=19% Similarity=0.260 Sum_probs=86.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
+.|+|+|++|||||||+|+|+|.. ..+++.+.+|..... ....+.+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~---~~~~~~~~~T~d~~~-----------------~~i~~~g-------------- 225 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLT---QKVDTKLFTTMSPKR-----------------YAIPINN-------------- 225 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC--------------CCSCE-----------------EEEEETT--------------
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC---ccccCCcccccCCEE-----------------EEEEECC--------------
Confidence 349999999999999999999988 455555555432110 0000111
Q ss_pred hcccccccccceEEcCCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCC--CCHH---HHHHHHHHhCCCC
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLD--ISDE---FKRVIASLRGNDD 353 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~--~~~~---~~~ll~~l~~~~~ 353 (547)
..+.++||||+... ..+.++. | ..+...+..+|++++++|+++.. .... ..+++..+...+.
T Consensus 226 --------~~v~l~DT~G~i~~lp~~lve~---f-~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~ 293 (364)
T 2qtf_A 226 --------RKIMLVDTVGFIRGIPPQIVDA---F-FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGK 293 (364)
T ss_dssp --------EEEEEEECCCBCSSCCGGGHHH---H-HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred --------EEEEEEeCCCchhcCCHHHHHH---H-HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCC
Confidence 26789999998542 1122221 1 12333478999999999987632 1111 1344555544578
Q ss_pred eEEEEeccCCCcChH--HHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQ--QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~--~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|.||+|+.+.. +.......+... +.......+++||+++.++++
T Consensus 294 p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~----l~~~~~~~~~~SA~~g~gi~~ 343 (364)
T 2qtf_A 294 PILVTLNKIDKINGDLYKKLDLVEKLSKE----LYSPIFDVIPISALKRTNLEL 343 (364)
T ss_dssp CEEEEEECGGGCCSCHHHHHHHHHHHHHH----HCSCEEEEEECBTTTTBSHHH
T ss_pred CEEEEEECCCCCCchHHHHHHHHHHHHHH----hcCCCCcEEEEECCCCcCHHH
Confidence 999999999998642 211111111111 111222347999999998764
No 102
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.46 E-value=2.1e-14 Score=133.05 Aligned_cols=150 Identities=21% Similarity=0.225 Sum_probs=92.1
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|++|||||||+|+|+|.. ..++..|+++....... ..+.+
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~---~~~~~~~~~t~~~~~~~-----------------~~~~~------------- 53 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN---VYIGNWPGVTVEKKEGE-----------------FEYNG------------- 53 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC---EEEEECTTSCCEEEEEE-----------------EEETT-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---ccccCCCCeeccceEEE-----------------EEeCC-------------
Confidence 4689999999999999999999976 34444454443221100 00011
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHh--hcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA--AKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
..+.++||||.......... ..+...+. ..+|++++++|+.+ .+....++..+...+.|++
T Consensus 54 ---------~~~~l~Dt~G~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~pii 116 (188)
T 2wjg_A 54 ---------EKFKVVDLPGVYSLTANSID-----EIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEMGANLL 116 (188)
T ss_dssp ---------EEEEEEECCCCSCCSSSSHH-----HHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTTTCCEE
T ss_pred ---------cEEEEEECCCcCccccccHH-----HHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHhcCCCEE
Confidence 26899999998653110000 11233333 46999999999875 2344566667777789999
Q ss_pred EEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+.....+......+ .+..+ ...+++||+++.++.+
T Consensus 117 lv~nK~Dl~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 117 LALNKMDLAKSLGIEIDVDKL----EKILG---VKVVPLSAAKKMGIEE 158 (188)
T ss_dssp EEEECHHHHHHTTCCCCHHHH----HHHHT---SCEEECBGGGTBSHHH
T ss_pred EEEEhhhccccccchHHHHHH----HHHhC---CCeEEEEecCCCCHHH
Confidence 999999986432111111111 11122 2347899999988764
No 103
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.46 E-value=2.9e-13 Score=124.17 Aligned_cols=150 Identities=17% Similarity=0.202 Sum_probs=82.0
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce-eEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR-FVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...|+++|++|+|||||+|.|++..+ .....|+++. +.... ..+.+ +.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~------------------~~~~~----~~------ 56 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKY---SQQYKATIGADFLTKE------------------VTVDG----DK------ 56 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC---CTTC---CCCSCEEEE------------------ECCSS----SC------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcC---CcccCCccceEEEEEE------------------EEEcC----Cc------
Confidence 46799999999999999999999874 2222233221 11100 00000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---C----
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---G---- 350 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~---- 350 (547)
...+.++||||.... ......++..+|++|+++|+.+....+....++..+. .
T Consensus 57 ---------~~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 116 (182)
T 1ky3_A 57 ---------VATMQVWDTAGQERF-----------QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSP 116 (182)
T ss_dssp ---------CEEEEEECCC---------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCT
T ss_pred ---------EEEEEEEECCCChHh-----------hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCc
Confidence 026899999996431 1123344689999999999986322122223333322 1
Q ss_pred CCCeEEEEeccCCCcChHH-H-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 351 NDDKIRVVLNKADQVDTQQ-L-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 351 ~~~~iivVlNK~D~~~~~~-l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.+.|+++|+||+|+..... . ......+ .+.. .....+.+||++|.++++
T Consensus 117 ~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~----~~~~--~~~~~~~~Sa~~~~gi~~ 167 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEESKKIVSEKSAQEL----AKSL--GDIPLFLTSAKNAINVDT 167 (182)
T ss_dssp TTCCEEEEEECTTSCGGGCCSCHHHHHHH----HHHT--TSCCEEEEBTTTTBSHHH
T ss_pred CCCcEEEEEECCccccccccCCHHHHHHH----HHhc--CCCeEEEEecCCCCCHHH
Confidence 5789999999999963311 0 1111111 1111 223447999999998764
No 104
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=5.5e-13 Score=125.59 Aligned_cols=150 Identities=13% Similarity=0.174 Sum_probs=89.3
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+|+|.+|+|||||+|+|++..+ .....++.+....... ..+.+ .
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~---~~~~~~t~~~~~~~~~-----------------~~~~~-----~------ 73 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF---PPGQGATIGVDFMIKT-----------------VEING-----E------ 73 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC---CTTCCCCCSEEEEEEE-----------------EEETT-----E------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC---CCCCCCccceeEEEEE-----------------EEECC-----E------
Confidence 346899999999999999999999874 2333344332221000 00000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHH---HHhCCCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIA---SLRGNDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~---~l~~~~~~ 354 (547)
...+.|+||||... +......++..+|++|+|+|.++....+.....+. .....+.|
T Consensus 74 ---------~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p 133 (201)
T 2ew1_A 74 ---------KVKLQIWDTAGQER-----------FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI 133 (201)
T ss_dssp ---------EEEEEEEEECCSGG-----------GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE
T ss_pred ---------EEEEEEEECCCcHH-----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 02689999999642 12344555789999999999876321111222333 33345789
Q ss_pred EEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+.+..++. .....+ .+..+ +..+.+||++|.++++
T Consensus 134 iilv~NK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 134 TVLVGNKIDLAERREVSQQRAEEF----SEAQD---MYYLETSAKESDNVEK 178 (201)
T ss_dssp EEEEEECGGGGGGCSSCHHHHHHH----HHHHT---CCEEECCTTTCTTHHH
T ss_pred EEEEEECCCCccccccCHHHHHHH----HHHcC---CEEEEEeCCCCCCHHH
Confidence 99999999997432110 111111 11111 2347899999998864
No 105
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.45 E-value=3.8e-14 Score=130.73 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=66.6
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+|||||+|+|++... .....|+++....... ..+.+ .
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~~-----------------~~~~~-----~------- 55 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF---NSTFISTIGIDFKIRT-----------------IELDG-----K------- 55 (183)
T ss_dssp EEEEEEECCCCC-------------------CHHHHHCEEEEEEE-----------------EEETT-----E-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCcccceeEEEE-----------------EEECC-----E-------
Confidence 46799999999999999999998763 3333444443221100 00000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~i 355 (547)
...+.|+||||..... .....++..+|++|+|+|..+...-+....++..+. ..+.|+
T Consensus 56 --------~~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 116 (183)
T 2fu5_C 56 --------RIKLQIWDTAGQERFR-----------TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK 116 (183)
T ss_dssp --------EEEEEEEEC--------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred --------EEEEEEEcCCCChhhh-----------hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 0268999999975321 122334689999999999987322223333444443 247899
Q ss_pred EEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+.+..++ ......+ .+..+ +..+.+||+++.++++
T Consensus 117 ilv~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 117 MILGNKCDVNDKRQVSKERGEKL----ALDYG---IKFMETSAKANINVEN 160 (183)
T ss_dssp EEEEEC--CCSCCCSCHHHHHHH----HHHHT---CEEEECCC---CCHHH
T ss_pred EEEEECccCCccCcCCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 999999999742111 0111111 11112 3457999999988764
No 106
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.45 E-value=2.8e-13 Score=122.72 Aligned_cols=148 Identities=13% Similarity=0.173 Sum_probs=87.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|.+|+|||||+|+|++... ... ..++.+....... .. +.+ ..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~--~~~-~~~~~~~~~~~~~-----------~~------~~~----~~-------- 54 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQF--HEF-QESTIGAAFLTQT-----------VC------LDD----TT-------- 54 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CTT-CCCCSSEEEEEEE-----------EE------ETT----EE--------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC--CCC-CCCccceEEEEEE-----------EE------ECC----EE--------
Confidence 5799999999999999999998774 221 1122221110000 00 000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ii 356 (547)
..+.++||||.... ......++..+|++++++|+.+....+....++..+. ..+.|++
T Consensus 55 --------~~~~~~D~~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii 115 (170)
T 1r2q_A 55 --------VKFEIWDTAGQERY-----------HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIA 115 (170)
T ss_dssp --------EEEEEEEECCSGGG-----------GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEeCCCcHHh-----------hhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 26899999996431 1234556789999999999976322223333444333 3468899
Q ss_pred EEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+....+.. +....+ .... .+..+.+||++|.++++
T Consensus 116 lv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 116 LSGNKADLANKRAVDFQEAQSY----ADDN---SLLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEEECGGGGGGCCSCHHHHHHH----HHHT---TCEEEECCTTTCTTHHH
T ss_pred EEEECccCccccccCHHHHHHH----HHHc---CCeEEEEeCCCCCCHHH
Confidence 999999986431110 111111 1111 23457899999988764
No 107
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=1.2e-13 Score=128.39 Aligned_cols=149 Identities=13% Similarity=0.132 Sum_probs=88.9
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+|+|++|+|||||+|+|++..+ .....|+.+....... . .+.+ ..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~~~-----------~------~~~~----~~------- 63 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTF---DPELAATIGVDFKVKT-----------I------SVDG----NK------- 63 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC---CTTCCCCCSEEEEEEE-----------E------EETT----EE-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC---CccCCCccceEEEEEE-----------E------EECC----eE-------
Confidence 36899999999999999999999874 2222333222111000 0 0000 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~ 354 (547)
..+.|+||||.... ......++..+|++|+|+|+.+.........++..+.. .+.|
T Consensus 64 ---------~~~~i~Dt~G~~~~-----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 123 (195)
T 1x3s_A 64 ---------AKLAIWDTAGQERF-----------RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV 123 (195)
T ss_dssp ---------EEEEEEEECSSGGG-----------CCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE
T ss_pred ---------EEEEEEeCCCchhh-----------hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 26899999996421 11345567899999999999763222233344555543 3689
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+...+........+ .+.. .+..+.+||+++.++++
T Consensus 124 ~ilv~nK~Dl~~~~~~~~~~~~~----~~~~---~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 124 NMLVGNKIDKENREVDRNEGLKF----ARKH---SMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEEEECTTSSSCCSCHHHHHHH----HHHT---TCEEEECCTTTCTTHHH
T ss_pred EEEEEECCcCcccccCHHHHHHH----HHHc---CCEEEEecCCCCCCHHH
Confidence 99999999985321100111111 1111 23457899999988764
No 108
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.45 E-value=8.3e-14 Score=127.62 Aligned_cols=150 Identities=12% Similarity=0.152 Sum_probs=86.6
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+|||||+|+|++..+ .....|+++....... ..+.+ .
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~~-----------------~~~~~-----~------- 53 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETF---GKQYKQTIGLDFFLRR-----------------ITLPG-----N------- 53 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGT---THHHHHTTTSSEEEEE-----------------EEETT-----T-------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcC---CCCCCCceeEEEEEEE-----------------EEeCC-----C-------
Confidence 36799999999999999999999874 2222233321111000 00000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC-----CCC
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG-----NDD 353 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~-----~~~ 353 (547)
....+.++||||.... ......++..+|++++|+|+++....+....++..+.. .+.
T Consensus 54 -------~~~~~~~~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ 115 (178)
T 2hxs_A 54 -------LNVTLQIWDIGGQTIG-----------GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115 (178)
T ss_dssp -------EEEEEEEEECTTCCTT-----------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCC
T ss_pred -------CEEEEEEEECCCCccc-----------cchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence 0027899999997532 11345567899999999999863221222233333332 144
Q ss_pred e-EEEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 K-IRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~-iivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
| +++|.||+|+.+..++ .+....+. +..+ +..+.+||++|.++++
T Consensus 116 ~~iilv~nK~Dl~~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 116 PLVALVGNKIDLEHMRTIKPEKHLRFC----QENG---FSSHFVSAKTGDSVFL 162 (178)
T ss_dssp CEEEEEEECGGGGGGCSSCHHHHHHHH----HHHT---CEEEEECTTTCTTHHH
T ss_pred CeEEEEEEccccccccccCHHHHHHHH----HHcC---CcEEEEeCCCCCCHHH
Confidence 5 8999999999642111 01111111 1112 3457899999988764
No 109
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.45 E-value=4.4e-14 Score=136.79 Aligned_cols=130 Identities=14% Similarity=0.230 Sum_probs=71.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCc--ccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEP--TTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~--~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 275 (547)
..+.|+|+|++|+|||||+|+|+|... ..+..+ +++....... ..+.+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~---~~~~~~~~~~t~~~~~~~-----------------~~~~~---------- 77 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV---FHSGTAAKSITKKCEKRS-----------------SSWKE---------- 77 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC---SCC-------CCSCEEEE-----------------EEETT----------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc---CccCCCCCceeeeEEEEE-----------------EEeCC----------
Confidence 346899999999999999999999884 333333 2222111000 00011
Q ss_pred hhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh-----C
Q 008954 276 KFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR-----G 350 (547)
Q Consensus 276 ~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~-----~ 350 (547)
..+.|+||||+.+......+....+..........+|++|+|+|+.+. +......+..+. .
T Consensus 78 ------------~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~--~~~~~~~l~~~~~~~~~~ 143 (239)
T 3lxx_A 78 ------------TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY--TEEEHKATEKILKMFGER 143 (239)
T ss_dssp ------------EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC--SSHHHHHHHHHHHHHHHH
T ss_pred ------------ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC--CHHHHHHHHHHHHHhhhh
Confidence 378999999998652111000001112222334678999999998753 223344444332 1
Q ss_pred CCCeEEEEeccCCCcChHHHH
Q 008954 351 NDDKIRVVLNKADQVDTQQLM 371 (547)
Q Consensus 351 ~~~~iivVlNK~D~~~~~~l~ 371 (547)
...|+++|+||+|++...++.
T Consensus 144 ~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 144 ARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HGGGEEEEEECGGGC------
T ss_pred ccceEEEEEeCCccCCcccHH
Confidence 245899999999998665444
No 110
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.45 E-value=4.4e-13 Score=126.05 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=87.2
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+|+|.+|+|||||+|.|++..+ .....++.+....... ..+.+ .
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~~-----------------~~~~~-----~------ 76 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF---SERQGSTIGVDFTMKT-----------------LEIQG-----K------ 76 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-------------CEEEEE-----------------EEETT-----E------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC---CCCCCCCcceEEEEEE-----------------EEECC-----E------
Confidence 346899999999999999999999874 2222233221111000 00000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ 354 (547)
...+.|+||||... +......++..+|++|+|+|..+...-+....++..+. ..+.|
T Consensus 77 ---------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p 136 (201)
T 2hup_A 77 ---------RVKLQIWDTAGQER-----------FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV 136 (201)
T ss_dssp ---------EEEEEEECCTTCGG-----------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE
T ss_pred ---------EEEEEEEECCCcHh-----------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 02789999999742 22355667899999999999876321122233444433 35689
Q ss_pred EEEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+....++ .+....+ .+..+.. ..+.+||+++.++++
T Consensus 137 iilv~NK~Dl~~~~~v~~~~~~~~----~~~~~~~--~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 137 QLLIGNKSDLSELREVSLAEAQSL----AEHYDIL--CAIETSAKDSSNVEE 182 (201)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHH----HHHTTCS--EEEECBTTTTBSHHH
T ss_pred EEEEEECCccccccccCHHHHHHH----HHHcCCC--EEEEEeCCCCCCHHH
Confidence 9999999999752111 0111111 1112221 447999999988764
No 111
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=128.27 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=89.1
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
....+|+|+|.+|+|||||+|+|++..+ . ....++++........ .....
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~-~~~~~t~~~~~~~~~~----------------~~~~~----------- 71 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEF--S-EGYDPTVENTYSKIVT----------------LGKDE----------- 71 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC--C-SCCCCCSEEEEEEEEC--------------------C-----------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCC--C-CCCCCccceEEEEEEE----------------ECCEE-----------
Confidence 3457899999999999999999999885 2 2223333321110000 00000
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----ND 352 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~ 352 (547)
..+.|+||||..... .....++..+|++++++|..+....+....++..+.. .+
T Consensus 72 -----------~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 129 (201)
T 3oes_A 72 -----------FHLHLVDTAGQDEYS-----------ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR 129 (201)
T ss_dssp -----------EEEEEEEECCCCTTC-----------CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----C
T ss_pred -----------EEEEEEECCCccchH-----------HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 267899999975421 0122346889999999999863322334445555543 36
Q ss_pred CeEEEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.|+++|+||+|+....++.. ....+ .+..+ ...+.+||++|.++++
T Consensus 130 ~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 130 VPVVLVGNKADLSPEREVQAVEGKKL----AESWG---ATFMESSARENQLTQG 176 (201)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHH----HHHHT---CEEEECCTTCHHHHHH
T ss_pred CCEEEEEECccCccccccCHHHHHHH----HHHhC---CeEEEEeCCCCCCHHH
Confidence 79999999999874321111 11111 11122 2447899999887754
No 112
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.44 E-value=3e-13 Score=126.86 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=84.4
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+|+|.+|+|||||+|+|++..+. ....+..+++..... . .+.+ ..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~-------------~------~~~~----~~------ 76 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFR-ENISATLGVDFQMKT-------------L------IVDG----ER------ 76 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEE-------------E------EETT----EE------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCCccceeEEEE-------------E------EECC----EE------
Confidence 4578999999999999999999998741 111111111110000 0 0000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH---hCCCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL---RGNDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l---~~~~~~ 354 (547)
..+.|+||||... +......++..+|++|+|+|+.+....+....++..+ ...+.|
T Consensus 77 ----------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p 135 (199)
T 2p5s_A 77 ----------TVLQLWDTAGQER-----------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP 135 (199)
T ss_dssp ----------EEEEEEECTTCTT-----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC
T ss_pred ----------EEEEEEECCCCcc-----------hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC
Confidence 2689999999753 1234566678999999999997632212223333333 334789
Q ss_pred EEEEeccCCCcChHH------H-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQ------L-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~------l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+..... + ......+ .+.. .+..+.+||++|.++++
T Consensus 136 iilv~NK~Dl~~~~~~~~~~~v~~~~~~~~----~~~~---~~~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 136 IMLVGNKADIRDTAATEGQKCVPGHFGEKL----AMTY---GALFCETSAKDGSNIVE 186 (199)
T ss_dssp EEEEEECGGGHHHHHHTTCCCCCHHHHHHH----HHHH---TCEEEECCTTTCTTHHH
T ss_pred EEEEEECcccccccccccccccCHHHHHHH----HHHc---CCeEEEeeCCCCCCHHH
Confidence 999999999863211 0 0111111 1111 23457899999988764
No 113
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.44 E-value=1.9e-13 Score=128.48 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=60.0
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCC-CCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHI-GPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v-~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...|+|+|.+|+|||||+|+|++... ... ...++++..... ....+.+.. ..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~~~t~~~~~~~-----------------~~~~~~~~~--~~------ 72 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGS--KFLKDYAMTSGVEVVV-----------------APVTIPDTT--VS------ 72 (208)
T ss_dssp EEEEEEC------------------------------------C-----------------EEEECTTSS--EE------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC--cccCCCCCccceEEEE-----------------EEEEECCcc--cE------
Confidence 36899999999999999999999832 112 222232211100 000000000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC------C
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG------N 351 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~------~ 351 (547)
..+.|+||||.... ......++..+|++|+|+|+.+...-+....++..+.. .
T Consensus 73 ----------~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 131 (208)
T 2yc2_C 73 ----------VELFLLDTAGSDLY-----------KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRER 131 (208)
T ss_dssp ----------EEEEEEETTTTHHH-----------HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTS
T ss_pred ----------EEEEEEECCCcHHH-----------HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhccccc
Confidence 26899999998431 12344456899999999999873222333444444432 4
Q ss_pred CCeEEEEeccCCCcC-hHHHH-HHHHHHHHhhhhccCCCCcEEEEecccC-CCCCCC
Q 008954 352 DDKIRVVLNKADQVD-TQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFN-DKPING 405 (547)
Q Consensus 352 ~~~iivVlNK~D~~~-~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~-~~~l~~ 405 (547)
+.|+++|+||+|+.. ..++. .....+ .+..+ +..+.+||++ +.++.+
T Consensus 132 ~~piilv~nK~Dl~~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~~~~gi~~ 181 (208)
T 2yc2_C 132 PLRAVLVANKTDLPPQRHQVRLDMAQDW----ATTNT---LDFFDVSANPPGKDADA 181 (208)
T ss_dssp CCEEEEEEECC-------CCCHHHHHHH----HHHTT---CEEEECCC-------CH
T ss_pred CCcEEEEEECcccchhhccCCHHHHHHH----HHHcC---CEEEEeccCCCCcCHHH
Confidence 789999999999976 22110 111112 11122 3457999999 999875
No 114
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.44 E-value=1.2e-12 Score=121.83 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=60.2
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHH----HHHHHHHHhC-----CCCeEEEEe
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDE----FKRVIASLRG-----NDDKIRVVL 359 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~----~~~ll~~l~~-----~~~~iivVl 359 (547)
.+.++||||... +......++..+|++|+|+|+.+ ....+ +..+...+.. .+.|+++|.
T Consensus 75 ~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~D~~~-~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~ 142 (198)
T 3t1o_A 75 RFHLYTVPGQVF-----------YNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGLTLDDVPIVIQV 142 (198)
T ss_dssp EEEEEECCSCCS-----------CSHHHHHHTTTCCEEEEEEECCG-GGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEE
T ss_pred EEEEEeCCChHH-----------HHHHHHHHHhcCCEEEEEEECCc-chhhHhHHHHHHHHHHHHhhccccCCCCEEEEE
Confidence 689999999753 12345566899999999999984 22222 2222222221 478999999
Q ss_pred ccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 360 NKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 360 NK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
||+|+.......+.. .+ .+..+. ...+.+||++|.++.+
T Consensus 143 NK~Dl~~~~~~~~~~-~~----~~~~~~--~~~~~~Sa~~~~gv~~ 181 (198)
T 3t1o_A 143 NKRDLPDALPVEMVR-AV----VDPEGK--FPVLEAVATEGKGVFE 181 (198)
T ss_dssp ECTTSTTCCCHHHHH-HH----HCTTCC--SCEEECBGGGTBTHHH
T ss_pred EchhcccccCHHHHH-HH----HHhcCC--ceEEEEecCCCcCHHH
Confidence 999986531111111 11 111221 1447999999998764
No 115
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.44 E-value=9.6e-14 Score=131.93 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=90.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+|+|.+|+|||||+|+|++..+ .....++.+...... ...+....+..+....
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~---~~~~~~t~~~~~~~~-----------~~~~~~~~~~~~~~~~-------- 81 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF---NPKFITTVGIDFREK-----------RVVYNAQGPNGSSGKA-------- 81 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC---CCEEEEEEEEEEEEE-----------EEEEEC-------CCE--------
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC---CcCCCCceeEEEEEE-----------EEEECCccccccccCc--------
Confidence 446899999999999999999998774 222222222111100 0000000000000000
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~ 353 (547)
....+.|+||||... +......++..+|++|+|+|+.+.........++..+.. .+.
T Consensus 82 --------~~~~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~ 142 (217)
T 2f7s_A 82 --------FKVHLQLWDTAGQER-----------FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142 (217)
T ss_dssp --------EEEEEEEEEEESHHH-----------HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCC
T ss_pred --------eeEEEEEEECCCcHh-----------HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCC
Confidence 003689999999531 223566678999999999999763222223334444433 468
Q ss_pred eEEEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+....++ ......+ .+..+ +..+.+||+++.++++
T Consensus 143 piilV~NK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~g~gi~~ 188 (217)
T 2f7s_A 143 DIVLIGNKADLPDQREVNERQAREL----ADKYG---IPYFETSAATGQNVEK 188 (217)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHH----HHHTT---CCEEEEBTTTTBTHHH
T ss_pred CEEEEEECCccccccccCHHHHHHH----HHHCC---CcEEEEECCCCCCHHH
Confidence 99999999999753211 0111111 11122 2347899999988764
No 116
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.44 E-value=1.8e-13 Score=140.81 Aligned_cols=197 Identities=16% Similarity=0.214 Sum_probs=107.4
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccccccc----
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTTFGGA---- 272 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~---- 272 (547)
.-|.|+|+|.+|||||||+|+|+|..+ .+.+....|.+.+.+................ .....+.........
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~--lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDF--LPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCC--SCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCc--CCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 346999999999999999999999987 6777666666555543321110000000000 000011110000000
Q ss_pred ----------hhhhhhhhcccccccccceEEcCCCCCChhh----hhhhcccChHHHHHHHhhcCCeEEEEecCCCCCC-
Q 008954 273 ----------FLSKFECSQMSHPLLDQVTFVDTPGVLSGEK----QRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDI- 337 (547)
Q Consensus 273 ----------~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~----~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~- 337 (547)
+-..........+-...++||||||+..... ..... ....++..++.++|++|+++|+...+.
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~--~~~~~~~~~i~~~d~iilvv~~~~~~~~ 188 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK--DIENMVRSYIEKPNCIILAISPANQDLA 188 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH--HHHHHHHHHHHSSSEEEEEEEETTSCGG
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH--HHHHHHHHHhhcCCeEEEEeecccCCcC
Confidence 0000000011112234789999999976310 01111 124577888999999999988654332
Q ss_pred CHHHHHHHHHHhCCCCeEEEEeccCCCcChHH-HHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 338 SDEFKRVIASLRGNDDKIRVVLNKADQVDTQQ-LMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 338 ~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~-l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
..+...+++.+...+.|+++|+||+|+++... ...... ....... ...+.+++..+.++.+
T Consensus 189 ~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~----~~~~~~~---~~~~~v~~~s~~~i~~ 250 (360)
T 3t34_A 189 TSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILE----GRSFKLK---YPWVGVVNRSQADINK 250 (360)
T ss_dssp GCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHT----TSSSCCS---SCCEEECCCCHHHHHT
T ss_pred CHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHc----Ccccccc---CCeEEEEECChHHhcc
Confidence 34556778888777889999999999986432 111111 1111111 2235778887776654
No 117
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.44 E-value=8.1e-14 Score=131.18 Aligned_cols=150 Identities=14% Similarity=0.072 Sum_probs=86.7
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+|+|.+|+|||||+|.|++..+ .....++++....... ..+.+ ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~-----------------~~~~~----~~------- 56 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKE-----------------VMVDD----RL------- 56 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC---CSSCCCCCSEEEEEEE-----------------EESSS----CE-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCcccceEEEEE-----------------EEECC----EE-------
Confidence 46799999999999999999999884 2233334332221100 00000 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---C----C
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---G----N 351 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~----~ 351 (547)
..+.|+||||..... . ....++..+|++|+++|+.+.........++..+. . .
T Consensus 57 ---------~~~~l~Dt~G~~~~~-----~------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 116 (207)
T 1vg8_A 57 ---------VTMQIWDTAGQERFQ-----S------LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116 (207)
T ss_dssp ---------EEEEEEEECSSGGGS-----C------SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGG
T ss_pred ---------EEEEEEeCCCcHHHH-----H------hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCC
Confidence 268999999964311 0 12234689999999999976321112222222221 1 3
Q ss_pred CCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 352 DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 352 ~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+.|+++|+||+|+............+ .... ..+..+.+||++|.|+++
T Consensus 117 ~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~--~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 117 NFPFVVLGNKIDLENRQVATKRAQAW----CYSK--NNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp GSCEEEEEECTTSSCCCSCHHHHHHH----HHHT--TSCCEEECBTTTTBSHHH
T ss_pred CCcEEEEEECCCCcccccCHHHHHHH----HHhc--CCceEEEEeCCCCCCHHH
Confidence 67999999999997432111111111 1101 223457999999998764
No 118
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.44 E-value=2.2e-13 Score=132.68 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=77.2
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCc--ccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEP--TTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~--~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 275 (547)
....|+|+|.+|+|||||+|+|+|... ..++..+ +|....... ..+.+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~--~~~~~~~~~~T~~~~~~~------------------~~~~~---------- 69 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRR--FFSRLGATSVTRACTTGS------------------RRWDK---------- 69 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCC--C---------CCSCEEEE------------------EEETT----------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCC--ccccCCCCCccccEEEEE------------------EEECC----------
Confidence 457899999999999999999999986 4433322 222111100 00011
Q ss_pred hhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHH---hhcCCeEEEEecCCCCCCCHHHHHHHHHHhCC-
Q 008954 276 KFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWF---AAKCDLILLLFDPHKLDISDEFKRVIASLRGN- 351 (547)
Q Consensus 276 ~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~---~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~- 351 (547)
..+.|+||||+.+.....-... ...+.+++ ...+|++|+|+|+.+ .+..+..+++.+.+.
T Consensus 70 ------------~~i~liDTPG~~~~~~~~~~~~--~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~ 133 (247)
T 3lxw_A 70 ------------CHVEVVDTPDIFSSQVSKTDPG--CEERGHCYLLSAPGPHALLLVTQLGR--FTAQDQQAVRQVRDMF 133 (247)
T ss_dssp ------------EEEEEEECCSCSSTTHHHHSTT--SHHHHHHHHHHTTCCSEEEEEEETTB--CCHHHHHHHHHHHHHH
T ss_pred ------------cEEEEEECCCCCCCCCCcHHHH--HHHHHHHHHhcCCCCCEEEEEEeCCC--CCHHHHHHHHHHHHHh
Confidence 3789999999986532210111 11233332 499999999999975 556666666655442
Q ss_pred -----CCeEEEEeccCCCcC
Q 008954 352 -----DDKIRVVLNKADQVD 366 (547)
Q Consensus 352 -----~~~iivVlNK~D~~~ 366 (547)
+.|+++|.||+|+..
T Consensus 134 ~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 134 GEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp CGGGGGGEEEEEECGGGGTT
T ss_pred ChhhhccEEEEEEchHhcCC
Confidence 679999999999965
No 119
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=1.7e-13 Score=127.62 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=88.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCccc--ceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTT--DRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T--~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 275 (547)
...+|+|+|.+|+|||||+|.|++..+ . ....++. +....... .. ...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~-~~~~~t~~~~~~~~~~~-------------~~----~~~---------- 71 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTF--T-PAFVSTVGIDFKVKTVY-------------RH----EKR---------- 71 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTT--C-CCEEEEETTTEEEEEEE-------------ET----TTT----------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCC--C-cccCCCeeeEEEEEEEE-------------EC----CEE----------
Confidence 446899999999999999999999874 1 1111111 11111000 00 000
Q ss_pred hhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCC
Q 008954 276 KFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GND 352 (547)
Q Consensus 276 ~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~ 352 (547)
..+.|+||||... +......++..+|++|+|+|..+...-+....++..+. ..+
T Consensus 72 ------------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 128 (191)
T 3dz8_A 72 ------------VKLQIWDTAGQER-----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN 128 (191)
T ss_dssp ------------EEEEEECHHHHHH-----------CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred ------------EEEEEEeCCChHH-----------HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 2689999999421 22356667899999999999986322222333444443 357
Q ss_pred CeEEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.|+++|.||+|+....+.. .....+ .+..+ +..+.+||++|.++.+
T Consensus 129 ~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 129 AQVILVGNKCDMEEERVVPTEKGQLL----AEQLG---FDFFEASAKENISVRQ 175 (191)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHH----HHHHT---CEEEECBTTTTBSHHH
T ss_pred CCEEEEEECCCCccccccCHHHHHHH----HHHcC---CeEEEEECCCCCCHHH
Confidence 8999999999986431110 111111 11122 2457999999998764
No 120
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.44 E-value=1.2e-13 Score=130.37 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=89.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+++|.+|+|||||+|.+++..+ .....+++....... . .+.+ .
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~---~~~~~~t~~~~~~~~------------~------~~~~-----~------ 76 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSAN------------V------MVDG-----K------ 76 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC---CC-CCCCSEEEEEEE------------E------ECC------C------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC---CCCcCCeecceeEEE------------E------EECC-----E------
Confidence 346899999999999999999998774 222223332211100 0 0000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhC--CCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRG--NDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~--~~~~ 354 (547)
...+.++||||..... .....++..+|++++|+|..+....+... .++..+.. .+.|
T Consensus 77 ---------~~~l~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 136 (204)
T 4gzl_A 77 ---------PVNLGLWDTAGLEDYD-----------RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP 136 (204)
T ss_dssp ---------EEEEEEEEECCSGGGT-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC
T ss_pred ---------EEEEEEEECCCchhhH-----------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 0256799999984311 12233468999999999998632222222 33444433 3789
Q ss_pred EEEEeccCCCcChHHHHHHHHH---------HHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~---------l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+....+..+.... ....+.+..+. ...+.+||++|.|+++
T Consensus 137 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~~ 194 (204)
T 4gzl_A 137 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKT 194 (204)
T ss_dssp EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHH
T ss_pred EEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC--cEEEEeeCCCCCCHHH
Confidence 9999999999865433222111 00111222222 2347999999998764
No 121
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.43 E-value=1.2e-13 Score=131.35 Aligned_cols=149 Identities=18% Similarity=0.190 Sum_probs=86.7
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCccccee--EEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRF--VVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~--~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
..+|+|+|.+|+|||||+|+|++... . ....++.+.. ....... .+ .
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~--~-~~~~~t~~~~~~~~~~~~~------------------~~-----~----- 59 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRF--E-KNYNATVGAVNHPVTFLDD------------------QG-----N----- 59 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCST--T-CEEETTTTEEEEEEEEEBT------------------TS-----C-----
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC--C-CCCCCccceeeEEEEEEeC------------------CC-----c-----
Confidence 46799999999999999999998774 2 1111222211 1110000 00 0
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH---HHHHHHhCCCC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK---RVIASLRGNDD 353 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~---~ll~~l~~~~~ 353 (547)
...+.++||||..... .....++..+|++|+++|+.+........ ..+......+.
T Consensus 60 ----------~~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (218)
T 4djt_A 60 ----------VIKFNVWDTAGQEKKA-----------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEA 118 (218)
T ss_dssp ----------EEEEEEEEECSGGGTS-----------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSS
T ss_pred ----------EEEEEEEecCCchhhc-----------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 0158899999964311 12334578999999999998632112222 23333344578
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+....++...... .+.. ......+.+||++|.++.+
T Consensus 119 piilv~nK~Dl~~~~~~~~~~~~---~~~~---~~~~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 119 PIVVCANKIDIKNRQKISKKLVM---EVLK---GKNYEYFEISAKTAHNFGL 164 (218)
T ss_dssp CEEEEEECTTCC----CCHHHHH---HHTT---TCCCEEEEEBTTTTBTTTH
T ss_pred CEEEEEECCCCccccccCHHHHH---HHHH---HcCCcEEEEecCCCCCHHH
Confidence 99999999999765332211111 1111 2234468999999999885
No 122
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.43 E-value=6.4e-13 Score=122.41 Aligned_cols=148 Identities=11% Similarity=0.119 Sum_probs=87.1
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+|+|.+|+|||||+|+|++... .....|+++....... .+.+ .
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~---~~~~~~t~~~~~~~~~------------------~~~~-----~------- 64 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIF---VDDYDPTIEDSYLKHT------------------EIDN-----Q------- 64 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC---CSCCCTTCCEEEEEEE------------------EETT-----E-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCCccceeEEEE------------------EeCC-----c-------
Confidence 46799999999999999999998873 3333344332221000 0000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHH----HHHhCCCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVI----ASLRGNDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll----~~l~~~~~~ 354 (547)
...+.++||||.... ......++..+|++++++|..+...-+....++ ......+.|
T Consensus 65 --------~~~l~i~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 125 (183)
T 3kkq_A 65 --------WAILDVLDTAGQEEF-----------SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 125 (183)
T ss_dssp --------EEEEEEEECCSCGGG-----------CSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC
T ss_pred --------EEEEEEEECCCchhh-----------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 014778999996421 113455578999999999998632111122222 223345789
Q ss_pred EEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEeccc-CCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSF-NDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~-~~~~l~~ 405 (547)
+++|.||+|+....++. .....+ .+..+ +..+.+||+ ++.++++
T Consensus 126 ~ilv~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 126 MILVANKVDLMHLRKVTRDQGKEM----ATKYN---IPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEECTTCSTTCCSCHHHHHHH----HHHHT---CCEEEEBCSSSCBSHHH
T ss_pred EEEEEECCCchhccCcCHHHHHHH----HHHhC---CeEEEeccCCCCCCHHH
Confidence 99999999986421110 111111 11122 234789999 8888764
No 123
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.43 E-value=7.2e-13 Score=125.07 Aligned_cols=169 Identities=15% Similarity=0.173 Sum_probs=92.1
Q ss_pred ccCCCCCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCcccc
Q 008954 190 FLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTF 269 (547)
Q Consensus 190 ~~~~~~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 269 (547)
.+.+..+..+..|+|+|++|||||||+|+|+|.... ..+++.++++..... ...
T Consensus 17 ~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~-~~~~~~~G~~~~~~~-------------------------~~~ 70 (210)
T 1pui_A 17 DIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSL-ARTSKTPGRTQLINL-------------------------FEV 70 (210)
T ss_dssp SGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEE-------------------------EEE
T ss_pred CHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCcc-ccccCCCccceeeEE-------------------------EEe
Confidence 344455668899999999999999999999998720 334444333332110 000
Q ss_pred ccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHh---hcCCeEEEEecCCCCCCCHHHHHHHH
Q 008954 270 GGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA---AKCDLILLLFDPHKLDISDEFKRVIA 346 (547)
Q Consensus 270 ~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~---~~aD~illv~d~~~~~~~~~~~~ll~ 346 (547)
+ ..+.++||||+..... .......+......+. ..+|.+++++|... ..+....++..
T Consensus 71 ~-----------------~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~ 131 (210)
T 1pui_A 71 A-----------------DGKRLVDLPGYGYAEV-PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH-PLKDLDQQMIE 131 (210)
T ss_dssp E-----------------TTEEEEECCCCC-------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHH
T ss_pred c-----------------CCEEEEECcCCccccc-CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC-CCchhHHHHHH
Confidence 0 2577999999864210 0000000111122222 56889999999876 34444445555
Q ss_pred HHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 347 SLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 347 ~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.+...+.|+++|.||+|+.+..+..+....+...+.+. . ..+..+++||+++.++.+
T Consensus 132 ~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Sal~~~~~~~ 188 (210)
T 1pui_A 132 WAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAF-N-GDVQVETFSSLKKQGVDK 188 (210)
T ss_dssp HHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG-C-SCEEEEECBTTTTBSHHH
T ss_pred HHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc-C-CCCceEEEeecCCCCHHH
Confidence 56666789999999999987644322121121111111 1 123457899999887653
No 124
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.43 E-value=3.4e-13 Score=125.11 Aligned_cols=148 Identities=13% Similarity=0.147 Sum_probs=82.3
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|.+|+|||||+|.|++... . ....++++..... . . .+.+ .
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~-~~~~~t~~~~~~~-~-----------~------~~~~-----~------- 67 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--V-DEYDPTIEDSYRK-Q-----------V------VIDG-----E------- 67 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--C-SCCCTTCCEEEEE-E-----------E------EETT-----E-------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--c-cccCCccceEEEE-E-----------E------EECC-----E-------
Confidence 36899999999999999999999874 2 1222222211110 0 0 0000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh----CCCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR----GNDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~----~~~~~ 354 (547)
...+.++||||.... ......++..+|++++++|..+.........++..+. ..+.|
T Consensus 68 --------~~~~~l~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 128 (190)
T 3con_A 68 --------TCLLDILDTAGQEEY-----------SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP 128 (190)
T ss_dssp --------EEEEEEEECCC----------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC
T ss_pred --------EEEEEEEECCChHHH-----------HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 025889999997531 1234456789999999999876322222233333332 24789
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+............+. +..+ +..+.+||+++.++.+
T Consensus 129 ~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~---~~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 129 MVLVGNKCDLPTRTVDTKQAHELA----KSYG---IPFIETSAKTRQGVED 172 (190)
T ss_dssp EEEEEECTTCSCCCSCHHHHHHHH----HHHT---CCEEECCTTTCTTHHH
T ss_pred EEEEEECCcCCcccCCHHHHHHHH----HHcC---CeEEEEeCCCCCCHHH
Confidence 999999999875211111111111 1122 2347899999988764
No 125
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.43 E-value=4.6e-13 Score=126.13 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=88.3
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+|+|++|+|||||+|+|++..+ .....|+++....... . .+.+ .
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~-----------~------~~~~-----~------- 55 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTY---TNDYISTIGVDFKIKT-----------V------ELDG-----K------- 55 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC---CTTCCCSSCCCEEEEE-----------E------EETT-----E-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCcccceeEEEE-----------E------EECC-----E-------
Confidence 46899999999999999999999884 2233333332111000 0 0000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~i 355 (547)
...+.|+||||..... .....++..+|++|+|+|+.+....+....++..+. ..+.|+
T Consensus 56 --------~~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 116 (206)
T 2bcg_Y 56 --------TVKLQIWDTAGQERFR-----------TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 116 (206)
T ss_dssp --------EEEEEEECCTTTTTTT-----------CCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred --------EEEEEEEeCCChHHHH-----------HHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 0268999999975321 112334689999999999987322223333343333 346899
Q ss_pred EEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+....++. .....+ .+..+ +..+.+||++|.++++
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 117 LLVGNKCDLKDKRVVEYDVAKEF----ADANK---MPFLETSALDSTNVED 160 (206)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHH----HHHTT---CCEEECCTTTCTTHHH
T ss_pred EEEEECCCCccccccCHHHHHHH----HHHcC---CeEEEEeCCCCCCHHH
Confidence 9999999997532110 111111 11122 2347899999988764
No 126
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=1.1e-12 Score=122.46 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=88.2
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
....|+++|.+|+|||||+|+|++..+ . ....|+++...... .. +.+ ..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~--~-~~~~~t~~~~~~~~------------~~------~~~----~~------ 75 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRF--I-WEYDPTLESTYRHQ------------AT------IDD----EV------ 75 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCC--C-SCCCTTCCEEEEEE------------EE------ETT----EE------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC--C-cccCCCCCceEEEE------------EE------ECC----EE------
Confidence 346899999999999999999999874 2 22223332211100 00 000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~ 353 (547)
..+.++||||... . .....++..+|++++++|.++....+....++..+ ...+.
T Consensus 76 ----------~~~~l~Dt~G~~~-~-----------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ 133 (196)
T 2atv_A 76 ----------VSMEILDTAGQED-T-----------IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV 133 (196)
T ss_dssp ----------EEEEEEECCCCCC-C-----------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCC
T ss_pred ----------EEEEEEECCCCCc-c-----------cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 2688999999875 1 13455678999999999998632212222222222 23578
Q ss_pred eEEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCC-CCCC
Q 008954 354 KIRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDK-PING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~-~l~~ 405 (547)
|+++|.||+|+....++. .....+ .+.. .+..+.+||+++. ++.+
T Consensus 134 piilv~NK~Dl~~~~~v~~~~~~~~----~~~~---~~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 134 TLILVGNKADLDHSRQVSTEEGEKL----ATEL---ACAFYECSACTGEGNITE 180 (196)
T ss_dssp CEEEEEECGGGGGGCCSCHHHHHHH----HHHH---TSEEEECCTTTCTTCHHH
T ss_pred cEEEEEECcccccccccCHHHHHHH----HHHh---CCeEEEECCCcCCcCHHH
Confidence 999999999997531110 111111 1111 2345789999998 7764
No 127
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=4.2e-13 Score=125.02 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=88.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|.+|+|||||+|.|++..+ .....|+++...... ..+.+. .
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~---~~~~~~t~~~~~~~~------------------~~~~~~----~-------- 65 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAVS------------------VTVGGK----Q-------- 65 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC---CCSCCCSSCCCEEEE------------------EESSSC----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCcccceeEEE------------------EEECCE----E--------
Confidence 5899999999999999999999874 222233332211100 000010 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhCC--CCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRGN--DDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~~--~~~ii 356 (547)
..+.++||||..... .....++..+|++++|+|..+...-.... .++..+... +.|++
T Consensus 66 --------~~~~i~D~~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 126 (194)
T 2atx_A 66 --------YLLGLYDTAGQEDYD-----------RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFL 126 (194)
T ss_dssp --------EEEEEECCCCSSSST-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE
T ss_pred --------EEEEEEECCCCcchh-----------HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 268899999986421 11233468899999999997632112222 334444432 78999
Q ss_pred EEeccCCCcChHHHHHHHH---------HHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYG---------ALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~---------~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|.||+|+....+....+. .....+.+..+.. ..+.+||++|.++++
T Consensus 127 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~~ 182 (194)
T 2atx_A 127 LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC--CYVECSALTQKGLKT 182 (194)
T ss_dssp EEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS--CEEECCTTTCTTHHH
T ss_pred EEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc--EEEEeeCCCCCCHHH
Confidence 9999999976432211100 0000111212221 347899999998764
No 128
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.42 E-value=3.1e-14 Score=155.32 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=84.5
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCC----------Cccccee--EEEEeCCCccccCCceeeec-CCCCCC
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGP----------EPTTDRF--VVVMSGPDERTIPGNTIAVH-ADLPFS 264 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~----------~~~T~~~--~~i~~~~~~~~~~g~~~~~~-~~~~~~ 264 (547)
....|+++|++|+|||||+|+|++... ..... .++.+.+ ..+.+.......+|+++... ..+.+.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~--~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELG--EINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHH--CC-------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcC--CcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 346799999999999999999987542 22211 1111111 12222222333455555221 111111
Q ss_pred CccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCC----CC--C
Q 008954 265 GLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKL----DI--S 338 (547)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~----~~--~ 338 (547)
+ ..+.|+||||+..-... +...+..+|++|+|+|+.+. ++ .
T Consensus 254 ~----------------------~~i~iiDTPGh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~ 300 (592)
T 3mca_A 254 K----------------------KIYEIGDAPGHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLEN 300 (592)
T ss_dssp ---------------------------CCEEESSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSC
T ss_pred C----------------------eEEEEEECCChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccc
Confidence 1 37899999998742111 11124689999999998752 12 4
Q ss_pred HHHHHHHHHHhCCCCe-EEEEeccCCCcC--hHHHHHHHHHHHHhhhhccCC--CCcEEEEecccCCCCCCCC
Q 008954 339 DEFKRVIASLRGNDDK-IRVVLNKADQVD--TQQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 339 ~~~~~ll~~l~~~~~~-iivVlNK~D~~~--~~~l~~~~~~l~~~l~~~~~~--~~v~~v~isa~~~~~l~~~ 406 (547)
.+..+.+..+...+.| +++|+||+|+++ .+.+......+...+.+..++ ..++.+++||++|.|+.+.
T Consensus 301 ~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~ 373 (592)
T 3mca_A 301 GQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQK 373 (592)
T ss_dssp SSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSC
T ss_pred hHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccc
Confidence 4455666666666776 999999999986 334433333332222011222 2456789999999999863
No 129
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=1.9e-13 Score=129.04 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=87.3
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|.+|+|||||+|.|++..+ . ....|+++...... ..+.+ .
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~--~-~~~~~t~~~~~~~~------------------~~~~~-----~------- 71 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEF--P-EVYVPTVFENYVAD------------------IEVDG-----K------- 71 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--C--------CCEEEEE------------------EEETT-----E-------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCC--C-CcCCCcccceEEEE------------------EEECC-----E-------
Confidence 35799999999999999999999885 2 22233333222100 00000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH-HHHHHHHhC--CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF-KRVIASLRG--NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~-~~ll~~l~~--~~~~i 355 (547)
...+.|+||||..... .....++..+|++++|+|..+...-... ..++..+.. .+.|+
T Consensus 72 --------~~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 132 (207)
T 2fv8_A 72 --------QVELALWDTAGQEDYD-----------RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPI 132 (207)
T ss_dssp --------EEEEEEEECTTCTTCT-----------TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE
T ss_pred --------EEEEEEEECCCcHHHH-----------HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 0268899999975421 1122346899999999998763211222 233344433 27899
Q ss_pred EEEeccCCCcChHHHHHHHHHHH---------HhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALM---------WSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~---------~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+.......+....+. ..+....+. ...+.+||++|.|+++
T Consensus 133 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~e 189 (207)
T 2fv8_A 133 ILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQA--YDYLECSAKTKEGVRE 189 (207)
T ss_dssp EEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHH
T ss_pred EEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCC--CEEEEeeCCCCCCHHH
Confidence 99999999986543332221110 011111121 1447899999998764
No 130
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.42 E-value=2.3e-12 Score=119.38 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=86.9
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+|+|.+|+|||||+|.+++..+ .....|+.+.+... . .+.+ .
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~---~~~~~~t~~~~~~~-------------~------~~~~-----~------ 65 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY---VQEESPEGGRFKKE-------------I------VVDG-----Q------ 65 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC---CCCCCTTCEEEEEE-------------E------EETT-----E------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC---CCCcCCCcceEEEE-------------E------EECC-----E------
Confidence 346899999999999999999999874 22223332211110 0 0001 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~ 353 (547)
...+.++||||..... ++..+|++++++|.++...-+....++..+.. .+.
T Consensus 66 ---------~~~l~i~Dt~G~~~~~----------------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 120 (184)
T 3ihw_A 66 ---------SYLLLIRDEGGPPELQ----------------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEV 120 (184)
T ss_dssp ---------EEEEEEEECSSSCCHH----------------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred ---------EEEEEEEECCCChhhh----------------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 0257889999985411 45789999999999873222333445555544 367
Q ss_pred eEEEEeccCCCcC-------hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVD-------TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~-------~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|.||+|+.. .++... + .+..+ ....+.+||++|.++++
T Consensus 121 piilv~nK~Dl~~~~~~~v~~~~~~~----~----~~~~~--~~~~~e~Sa~~~~gv~~ 169 (184)
T 3ihw_A 121 PMVLVGTQDAISAANPRVIDDSRARK----L----STDLK--RCTYYETCATYGLNVER 169 (184)
T ss_dssp CEEEEEECTTCBTTBCCCSCHHHHHH----H----HHHTT--TCEEEEEBTTTTBTHHH
T ss_pred CEEEEEECcccccccccccCHHHHHH----H----HHHcC--CCeEEEecCCCCCCHHH
Confidence 9999999999842 222222 1 11122 23447899999998764
No 131
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.42 E-value=1.5e-13 Score=130.65 Aligned_cols=117 Identities=18% Similarity=0.272 Sum_probs=72.3
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..+.|+++|++|+|||||+|+|++..+.....+..|+++. .+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~------------------------~~~~------------ 54 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA------------------------DYDG------------ 54 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET------------------------TGGG------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE------------------------EeeC------------
Confidence 4578999999999999999999998751111122222111 0001
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCC-CCCCCHHHHHHHHHH-------h
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPH-KLDISDEFKRVIASL-------R 349 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~-~~~~~~~~~~ll~~l-------~ 349 (547)
..+.++||||....... . ....+..+..+|++|+++|+. +...-......+..+ .
T Consensus 55 ----------~~~~l~Dt~G~~~~~~~-~------~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (218)
T 1nrj_B 55 ----------SGVTLVDFPGHVKLRYK-L------SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 117 (218)
T ss_dssp ----------SSCEEEECCCCGGGTHH-H------HHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ----------ceEEEEECCCcHHHHHH-H------HHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccc
Confidence 37899999999542110 0 111222234489999999987 433333333333332 1
Q ss_pred CCCCeEEEEeccCCCcCh
Q 008954 350 GNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 350 ~~~~~iivVlNK~D~~~~ 367 (547)
..+.|+++|+||+|+...
T Consensus 118 ~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 118 ENGIDILIACNKSELFTA 135 (218)
T ss_dssp TTCCCEEEEEECTTSTTC
T ss_pred cCCCCEEEEEEchHhccc
Confidence 257899999999999864
No 132
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.42 E-value=9.7e-13 Score=123.07 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=87.6
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+++|.+|||||||+|++.+...+...++...++....... . + ...
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~------~---~~~------ 68 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDI---------------S------N---SSF------ 68 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEE---------------C------C---TTS------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeec---------------c------C---CCe------
Confidence 457899999999999999999998653100000011111110000 0 0 000
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHH---HHHhhcCCeEEEEecCCCCCCCHHHHH---HHHHH--h
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVI---SWFAAKCDLILLLFDPHKLDISDEFKR---VIASL--R 349 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~---~~~~~~aD~illv~d~~~~~~~~~~~~---ll~~l--~ 349 (547)
..+.++||||...-. ... ..++..+|++|+|+|..+. ..+.... ++..+ .
T Consensus 69 ----------~~l~i~Dt~G~~~~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~ 126 (196)
T 3llu_A 69 ----------VNFQIWDFPGQMDFF-----------DPTFDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKV 126 (196)
T ss_dssp ----------CCEEEEECCSSCCTT-----------CTTCCHHHHHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHH
T ss_pred ----------eEEEEEECCCCHHHH-----------hhhhhcccccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhc
Confidence 278999999975311 012 4457899999999999873 3333333 33333 2
Q ss_pred CCCCeEEEEeccCCCcChHHHHHHH----HHHHHhhhhcc-CCCCcEEEEecccCCCCCCC
Q 008954 350 GNDDKIRVVLNKADQVDTQQLMRVY----GALMWSLGKVL-NTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 350 ~~~~~iivVlNK~D~~~~~~l~~~~----~~l~~~l~~~~-~~~~v~~v~isa~~~~~l~~ 405 (547)
..+.|+++|.||+|++..+...... ......+.+.. ....+..+.+||++ .++.+
T Consensus 127 ~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~ 186 (196)
T 3llu_A 127 NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFE 186 (196)
T ss_dssp CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHH
T ss_pred CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHH
Confidence 3478999999999998754321111 11111222211 01234557899999 88754
No 133
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.1e-12 Score=143.47 Aligned_cols=107 Identities=20% Similarity=0.201 Sum_probs=68.5
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCC------CCCHHHHHHHHHHhCCCC-eEEEEec
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKL------DISDEFKRVIASLRGNDD-KIRVVLN 360 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~------~~~~~~~~ll~~l~~~~~-~iivVlN 360 (547)
..+.|+||||+..- ...+...+..+|++|+|+|+.+. ....+..+.+..+...+. ++++|+|
T Consensus 245 ~~~~iiDTPG~e~f-----------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvN 313 (611)
T 3izq_1 245 ANFTIVDAPGHRDF-----------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN 313 (611)
T ss_dssp CEEEEEECCSSSCH-----------HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEE
T ss_pred ceEEEEECCCCccc-----------HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEe
Confidence 37899999999642 22333446899999999999751 123455666666666665 4999999
Q ss_pred cCCCcC--hHHHHHHHHHHHHhhhhccCC--CCcEEEEecccCCCCCCCC
Q 008954 361 KADQVD--TQQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 361 K~D~~~--~~~l~~~~~~l~~~l~~~~~~--~~v~~v~isa~~~~~l~~~ 406 (547)
|+|+.+ ..........+...+.. .+. ..+..+++||++|.|+.+.
T Consensus 314 KiDl~~~~~~~~~ei~~~l~~~l~~-~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 314 KMDNVDWSQQRFEEIKSKLLPYLVD-IGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CTTTTTTCHHHHHHHHHHHHHHHHH-HTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccccchhHHHHHHHHHHHHHHHHh-hcccccCccEEeeecccCCCcccc
Confidence 999986 22222222222111111 111 2355689999999999874
No 134
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.42 E-value=1.2e-13 Score=125.47 Aligned_cols=149 Identities=15% Similarity=0.072 Sum_probs=79.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|+|||||+|.|++... ......+.+...... .. .+.+ .
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~------------~~------~~~~-----~-------- 49 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQG--DHAHEMENSEDTYER------------RI------MVDK-----E-------- 49 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEE------------EE------EETT-----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccC--cccccCCCcCCeeeE------------EE------EECC-----e--------
Confidence 4699999999999999999998664 222222121111110 00 0000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~i 355 (547)
...+.++||||...... .....++..+|++++++|.++...-+.....+..+.. .+.|+
T Consensus 50 -------~~~~~i~D~~g~~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 112 (169)
T 3q85_A 50 -------EVTLIVYDIWEQGDAGG----------WLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 112 (169)
T ss_dssp -------EEEEEEECCCCC------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCE
T ss_pred -------EEEEEEEECCCccccch----------hhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCE
Confidence 02678999999864211 0223346789999999999763211222233333322 37899
Q ss_pred EEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+.+..++.. ....+ .+..+ ...+.+||+++.++.+
T Consensus 113 ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 113 ILVGNKSDLARSREVSLEEGRHL----AGTLS---CKHIETSAALHHNTRE 156 (169)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHH----HHHTT---CEEEECBTTTTBSHHH
T ss_pred EEEeeCcchhhcccCCHHHHHHH----HHHcC---CcEEEecCccCCCHHH
Confidence 99999999874321111 11111 12222 2457999999988764
No 135
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.42 E-value=2e-13 Score=125.86 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=87.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|.+|+|||||+|.|++..+ .....+++....... .. +.+ ..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~------------~~------~~~----~~-------- 52 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSAN------------VM------VDG----KP-------- 52 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC---CSSCCCCSCCEEEEE------------EE------ETT----EE--------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC---CCCcCCcccceeEEE------------EE------ECC----EE--------
Confidence 5799999999999999999998774 222223332211100 00 000 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhC--CCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRG--NDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~--~~~~ii 356 (547)
..+.++||||..... .....++..+|++++|+|..+...-.... .++..+.. .+.|++
T Consensus 53 --------~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii 113 (186)
T 1mh1_A 53 --------VNLGLWDTAGQEDYD-----------RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII 113 (186)
T ss_dssp --------EEEEEECCCCSGGGT-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEE
T ss_pred --------EEEEEEECCCCHhHH-----------HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEE
Confidence 267899999985321 11223468999999999997622112222 23444433 278999
Q ss_pred EEeccCCCcChHHHHHHHHH---------HHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l~~~~~~---------l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+............ ....+.+..+. ...+++||++|.|+++
T Consensus 114 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~ 169 (186)
T 1mh1_A 114 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKT 169 (186)
T ss_dssp EEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHH
T ss_pred EEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCC--cEEEEecCCCccCHHH
Confidence 99999999764322211110 00011222221 2457999999998764
No 136
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.41 E-value=3.2e-13 Score=125.63 Aligned_cols=128 Identities=18% Similarity=0.272 Sum_probs=75.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..+.|+++|++|+|||||+|+|++.......++..|+++. .+.+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~------------------------~~~~------------ 90 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA------------------------DYDG------------ 90 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------------------------------CCCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee------------------------eecC------------
Confidence 4578999999999999999999998741111122222211 0011
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCC-CCCCCHHHHHHHHHH-------h
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPH-KLDISDEFKRVIASL-------R 349 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~-~~~~~~~~~~ll~~l-------~ 349 (547)
..+.++||||....... .....+..+..+|++|+|+|+. +..........+..+ .
T Consensus 91 ----------~~~~l~Dt~G~~~~~~~-------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (193)
T 2ged_A 91 ----------SGVTLVDFPGHVKLRYK-------LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 153 (193)
T ss_dssp ----------TTCSEEEETTCCBSSCC-------HHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ----------CeEEEEECCCCchHHHH-------HHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhcc
Confidence 37899999998653111 1123344456699999999997 321111222222222 1
Q ss_pred CCCCeEEEEeccCCCcChHHHHHHHHHHH
Q 008954 350 GNDDKIRVVLNKADQVDTQQLMRVYGALM 378 (547)
Q Consensus 350 ~~~~~iivVlNK~D~~~~~~l~~~~~~l~ 378 (547)
..+.|+++|+||+|+....+..+....+.
T Consensus 154 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 154 ENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp TTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred ccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 24789999999999986544444444443
No 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.41 E-value=1.3e-13 Score=140.20 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=91.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
+.|+|+|.+|||||||||+|++.. ..++..|.||....+ +...+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~---~~i~~~~ftTl~p~~-----------------------g~v~~~~-------- 204 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAK---PKIADYHFTTLVPNL-----------------------GMVETDD-------- 204 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC---CEESSTTSSCCCCCE-----------------------EEEECSS--------
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCC---CccccCCccccCceE-----------------------EEEEeCC--------
Confidence 469999999999999999999887 344555544421110 0000000
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCC---CCCCHHHHHHHHHHhC-----C
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHK---LDISDEFKRVIASLRG-----N 351 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~---~~~~~~~~~ll~~l~~-----~ 351 (547)
-..+.|+||||+..+..+. +. +.......+.++|++|+|+|+++ ....+....++..+.. .
T Consensus 205 -------~~~~~l~DtPG~i~~a~~~--~~--l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~ 273 (342)
T 1lnz_A 205 -------GRSFVMADLPGLIEGAHQG--VG--LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLT 273 (342)
T ss_dssp -------SCEEEEEEHHHHHHHTTCT--TT--THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTT
T ss_pred -------CceEEEecCCCCccccccc--ch--hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhc
Confidence 0268999999986431110 11 11112223578999999999976 2323334445555543 3
Q ss_pred CCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 352 DDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 352 ~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+.|+++|+||+|+....+..+ .+. +.+... ...+++||+++.++++
T Consensus 274 ~~p~ilV~NK~Dl~~~~e~~~---~l~----~~l~~~-~~v~~iSA~tg~gi~e 319 (342)
T 1lnz_A 274 ERPQIIVANKMDMPEAAENLE---AFK----EKLTDD-YPVFPISAVTREGLRE 319 (342)
T ss_dssp TSCBCBEEECTTSTTHHHHHH---HHH----HHCCSC-CCBCCCSSCCSSTTHH
T ss_pred CCCEEEEEECccCCCCHHHHH---HHH----HHhhcC-CCEEEEECCCCcCHHH
Confidence 689999999999987543221 221 112211 2336899999999874
No 138
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.41 E-value=3.2e-13 Score=126.87 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=88.2
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|.+|+|||||+|.|++... .....|+++...... . .+.+ ..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~------------~------~~~~----~~------- 72 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQF---PEVYVPTVFENYIAD------------I------EVDG----KQ------- 72 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC---CSSCCCSSCCCCEEE------------E------EETT----EE-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC---CcccCCcccceEEEE------------E------EECC----EE-------
Confidence 35899999999999999999999874 222233332211100 0 0000 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH-HHHHHHHhC--CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF-KRVIASLRG--NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~-~~ll~~l~~--~~~~i 355 (547)
..+.|+||||...-. .....++..+|++++++|..+...-... ..++..+.. .+.|+
T Consensus 73 ---------~~l~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 132 (201)
T 2gco_A 73 ---------VELALWDTAGQEDYD-----------RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI 132 (201)
T ss_dssp ---------EEEEEECCCCSGGGT-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE
T ss_pred ---------EEEEEEECCCchhHH-----------HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 268899999964311 1122346899999999998763211222 223333332 27899
Q ss_pred EEEeccCCCcChHHHHHHHHHH---------HHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGAL---------MWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l---------~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+.......+....+ ...+.+..+. ...+.+||++|.++++
T Consensus 133 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~~ 189 (201)
T 2gco_A 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA--FGYLECSAKTKEGVRE 189 (201)
T ss_dssp EEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHH
T ss_pred EEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCC--cEEEEeeCCCCCCHHH
Confidence 9999999998654322211100 0011111222 1347899999998764
No 139
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.41 E-value=3.4e-13 Score=126.63 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=83.8
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce-eEEEEeCCCccccCCceeeecCCCCCCCccccccchhh
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR-FVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 275 (547)
+....|+|+|.+|+|||||+|.|++... . ....++++. +.... ..+.+ .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~--~-~~~~~t~~~~~~~~~------------------~~~~~-----~---- 72 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKF--K-QDSNHTIGVEFGSRV------------------VNVGG-----K---- 72 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC---------------CCEEEEE------------------EEETT-----E----
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC--C-ccCCCcccceeEEEE------------------EEECC-----e----
Confidence 3457899999999999999999998774 2 222233221 11100 00000 0
Q ss_pred hhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH---hCCC
Q 008954 276 KFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL---RGND 352 (547)
Q Consensus 276 ~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l---~~~~ 352 (547)
...+.|+||||... .. .....++..+|++|+|+|..+....+....++..+ ...+
T Consensus 73 -----------~~~l~l~Dt~G~~~-----~~------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 130 (200)
T 2o52_A 73 -----------TVKLQIWDTAGQER-----FR------SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN 130 (200)
T ss_dssp -----------EEEEEEECCTTHHH-----HS------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT
T ss_pred -----------eeEEEEEcCCCcHh-----HH------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 02689999999531 11 12345578999999999997632112223333333 3357
Q ss_pred CeEEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.|+++|+||+|+....++. .....+ .+.. .+..+.+||++|.|+.+
T Consensus 131 ~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~---~~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 131 IVVILCGNKKDLDPEREVTFLEASRF----AQEN---ELMFLETSALTGENVEE 177 (200)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHH----HHHT---TCEEEEECTTTCTTHHH
T ss_pred CcEEEEEECCCcccccccCHHHHHHH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 8999999999986432110 001111 1111 23457899999998764
No 140
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.41 E-value=8.1e-13 Score=132.90 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=91.8
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
+.+|+++|.+|+|||||+|.+++... ..++..+.+|....... ..+ .++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~--~~~~~~~~~Ti~~~~~~-----------------~~~-----~~~------- 51 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYS--AFDTRRLGATIDVEHSH-----------------LRF-----LGN------- 51 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCC--TGGGGGCCCCCSEEEEE-----------------EEE-----TTT-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC--CccccCcCCccceEEEE-----------------EEe-----CCc-------
Confidence 46799999999999999999998754 44443343332221100 000 011
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHH---HHHHHh--CCCC
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKR---VIASLR--GNDD 353 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~---ll~~l~--~~~~ 353 (547)
..+.++||||...-.... +......++..+|++|+|+|+.+....+.... .+..+. ..+.
T Consensus 52 ---------~~l~i~Dt~G~~~~~~~~------~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~ 116 (307)
T 3r7w_A 52 ---------MTLNLWDCGGQDVFMENY------FTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA 116 (307)
T ss_dssp ---------EEEEEEEECCSHHHHHHH------HTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ---------eEEEEEECCCcHHHhhhh------hhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCC
Confidence 278999999985321000 01245566789999999999987432232222 233333 2378
Q ss_pred eEEEEeccCCCcChHHHH---HHHHHHHHhhhhccCCCCcEEEEecccC
Q 008954 354 KIRVVLNKADQVDTQQLM---RVYGALMWSLGKVLNTPEVVRVYIGSFN 399 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~---~~~~~l~~~l~~~~~~~~v~~v~isa~~ 399 (547)
|+++|+||+|+...++.. .+.......+.+..+.+.+..+.+||++
T Consensus 117 piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~ 165 (307)
T 3r7w_A 117 KIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD 165 (307)
T ss_dssp EEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS
T ss_pred eEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC
Confidence 999999999998743222 1111222223344444345668899987
No 141
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.40 E-value=2.5e-13 Score=124.88 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=83.8
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|.+|+|||||+|+|++... .....|+++..... . ..+.+ .
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~-~-----------------~~~~~-----~------- 52 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF---VDSYDPTIENTFTK-L-----------------ITVNG-----Q------- 52 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEE-E-----------------EEETT-----E-------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCCccccEEE-E-----------------EEECC-----E-------
Confidence 36799999999999999999997763 22222333221110 0 00000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH----hCCCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL----RGNDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l----~~~~~~ 354 (547)
...+.++||||..... . ....++..+|++++++|..+....+....++..+ ...+.|
T Consensus 53 --------~~~~~l~Dt~G~~~~~--~---------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 113 (181)
T 3t5g_A 53 --------EYHLQLVDTAGQDEYS--I---------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP 113 (181)
T ss_dssp --------EEEEEEEECCCCCTTC--C---------CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC
T ss_pred --------EEEEEEEeCCCchhhh--H---------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 0267899999986421 0 1223357899999999998632222222233222 334789
Q ss_pred EEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+....++. .....+ .+..+ ...+.+||+++.++.+
T Consensus 114 ~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~---~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 114 IMLVGNKKDLHMERVISYEEGKAL----AESWN---AAFLESSAKENQTAVD 158 (181)
T ss_dssp EEEEEECTTCTTTCCSCHHHHHHH----HHHTT---CEEEECCTTSHHHHHH
T ss_pred EEEEEECccchhcceecHHHHHHH----HHHhC---CcEEEEecCCCCCHHH
Confidence 99999999986432110 111111 11122 2457899999887654
No 142
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.40 E-value=4.2e-13 Score=144.18 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=92.2
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+|+|.+|+|||||+|.|++..+ .. ..||.+..... ..+.+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~--~~--~~~T~~~~~~~-------------------~~~~~------------ 365 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS--VT--TIPTVGFNVET-------------------VTYKN------------ 365 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC--CC--CCCCSSEEEEE-------------------EESSS------------
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC--CC--cCCccceeEEE-------------------EEeCC------------
Confidence 346899999999999999999999885 32 23333322110 00111
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~ 353 (547)
..+.|+||||..... .....++..+|++|+|+|+++...-.+....+..+.. .+.
T Consensus 366 ----------~~~~l~Dt~G~~~~~-----------~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~ 424 (497)
T 3lvq_E 366 ----------VKFNVWDVGGQDKIR-----------PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA 424 (497)
T ss_dssp ----------CEEEEEEECCCGGGS-----------GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTC
T ss_pred ----------EEEEEEECCCcHHHH-----------HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCC
Confidence 278999999964321 1233346899999999999874323333334444422 478
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhhhh-ccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSLGK-VLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l~~-~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|+||+|+.......++...+ +. .........+.+||++|.|+++
T Consensus 425 p~ilv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~SA~~g~gi~~ 473 (497)
T 3lvq_E 425 IILIFANKQDLPDAMKPHEIQEKL----GLTRIRDRNWYVQPSCATSGDGLYE 473 (497)
T ss_dssp EEEEEEECCSSSSCCCHHHHHHHT----TCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred cEEEEEECCCCCcCCCHHHHHHHh----chhhhhcCCeEEEEEECCCCCCHHH
Confidence 999999999997532222221111 11 1122334568999999999874
No 143
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.40 E-value=1.5e-12 Score=120.89 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=85.5
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce-eEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR-FVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
...+|+|+|.+|+|||||+|+|++..+ .. ...++.+. +... .+...+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~-~~~~t~~~~~~~~-----------------------~~~~~~~----- 67 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRF--PD-RTEATIGVDFRER-----------------------AVDIDGE----- 67 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CS-SCCCCCSCCEEEE-----------------------EEEETTE-----
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCC--CC-CCCCCcceEEEEE-----------------------EEEECCE-----
Confidence 346899999999999999999999875 22 22222221 1110 0000000
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHH----HhCCC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIAS----LRGND 352 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~----l~~~~ 352 (547)
...+.|+||||...- +. .....++..+|++|+|+|+.+....+.....+.. +...+
T Consensus 68 ----------~~~~~l~Dt~G~~~~---~~-------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~ 127 (189)
T 1z06_A 68 ----------RIKIQLWDTAGQERF---RK-------SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND 127 (189)
T ss_dssp ----------EEEEEEEECCCSHHH---HT-------TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSC
T ss_pred ----------EEEEEEEECCCchhh---hh-------hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 026899999996421 00 2355667899999999999763211122222222 22457
Q ss_pred CeEEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPI 403 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l 403 (547)
.|+++|+||+|+.+..++. .....+ .+..+ +..+.+||+++.+.
T Consensus 128 ~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~~Sa~~~~~~ 172 (189)
T 1z06_A 128 IPRILVGNKCDLRSAIQVPTDLAQKF----ADTHS---MPLFETSAKNPNDN 172 (189)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHH----HHHTT---CCEEECCSSSGGGG
T ss_pred CCEEEEEECccccccceeCHHHHHHH----HHHcC---CEEEEEeCCcCCcc
Confidence 8999999999996532111 111111 11122 23478999999433
No 144
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.40 E-value=5.1e-13 Score=126.92 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=78.7
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|.+|+|||||+|.|++..+ .....|++....... . .+.+ .
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~------------~------~~~~-----~------- 80 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF---PESYTPTVFERYMVN------------L------QVKG-----K------- 80 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEE------------E------EETT-----E-------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCccceeEEEE------------E------EECC-----E-------
Confidence 36799999999999999999998774 222223332211100 0 0000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhC--CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRG--NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~--~~~~i 355 (547)
...+.|+||||...- ......++..+|++++|+|..+...-+... .++..+.. .+.|+
T Consensus 81 --------~~~l~l~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 141 (214)
T 2j1l_A 81 --------PVHLHIWDTAGQDDY-----------DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPI 141 (214)
T ss_dssp --------EEEEEEEEC--------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCE
T ss_pred --------EEEEEEEECCCchhh-----------hHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 026889999997531 123444578999999999997632112221 23333332 36899
Q ss_pred EEEeccCCCcChHHHHHHHHH---------HHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~---------l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+............ ....+.+..+. ...+.+||++|.++++
T Consensus 142 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~e 198 (214)
T 2j1l_A 142 IVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA--VAYLECSARLHDNVHA 198 (214)
T ss_dssp EEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECBTTTTBSHHH
T ss_pred EEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC--CEEEEecCCCCCCHHH
Confidence 999999999865433222110 00111222222 2457999999988764
No 145
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.39 E-value=2.7e-13 Score=124.64 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=83.3
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|.+|+|||||+|++++..+ .....|+++. .. .....+.+ .
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~---~~~~~~t~~~-~~-----------------~~~~~~~~-----~------- 54 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF---PTDYVPTVFD-NF-----------------SANVVVNG-----A------- 54 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC---C-----------C-----------------BCCCC----------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCeeee-eE-----------------EEEEEECC-----E-------
Confidence 46799999999999999999998774 2222222211 10 00000101 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhC--CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRG--NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~--~~~~i 355 (547)
...+.++||||...-. .....++..+|++++++|+.+...-+... .++..+.. .+.|+
T Consensus 55 --------~~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 115 (182)
T 3bwd_D 55 --------TVNLGLWDTAGQEDYN-----------RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI 115 (182)
T ss_dssp -----------CEEECCCC-CTTT-----------TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE
T ss_pred --------EEEEEEEECCCChhhh-----------hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 0257899999975321 12233468899999999997632212222 23344432 37899
Q ss_pred EEEeccCCCcChHHH-----------HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQL-----------MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l-----------~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+....+. ......+ .+..+. ...+.+||++|.++++
T Consensus 116 ilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~--~~~~~~Sa~~~~gi~~ 170 (182)
T 3bwd_D 116 VLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL----KKLIGA--PAYIECSSKSQENVKG 170 (182)
T ss_dssp EEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH----HHHHTC--SEEEECCTTTCTTHHH
T ss_pred EEEEechhhhcCcccccccccCCCCCHHHHHHH----HHHcCC--CEEEEEECCCCCCHHH
Confidence 999999999764332 1111111 222222 2447899999998764
No 146
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.39 E-value=1.2e-12 Score=122.59 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=88.6
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+|+|.+|||||||+|.|+|... .....|+++....... . .+.+ .
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~---~~~~~~~~~~~~~~~~-----------~------~~~~-----~------ 70 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQG---DSAHEPENPEDTYERR-----------I------MVDK-----E------ 70 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEEC---CGGGTTTSCTTEEEEE-----------E------EETT-----E------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccC---CccCCCCcccceEEEE-----------E------EECC-----E------
Confidence 346899999999999999999987653 2223343332221000 0 0000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCC
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDD 353 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~ 353 (547)
...+.++||||..... ..+...++..+|++|+|+|..+...-......+..+.. .+.
T Consensus 71 ---------~~~l~i~Dt~g~~~~~----------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 131 (195)
T 3cbq_A 71 ---------EVTLVVYDIWEQGDAG----------GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL 131 (195)
T ss_dssp ---------EEEEEEECCCCCSGGG----------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCC
T ss_pred ---------EEEEEEEecCCCccch----------hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 0257889999986321 01334557899999999999763211223334444432 378
Q ss_pred eEEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|.||+|+....++. .....+ .+..+ ...+.+||+++.++++
T Consensus 132 piilv~nK~Dl~~~~~v~~~~~~~~----a~~~~---~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 132 PVILVGNKSDLARSREVSLEEGRHL----AGTLS---CKHIETSAALHHNTRE 177 (195)
T ss_dssp CEEEEEECTTCTTTCCSCHHHHHHH----HHHTT---CEEEEEBTTTTBSHHH
T ss_pred CEEEEeechhccccCCcCHHHHHHH----HHHhC---CEEEEEcCCCCCCHHH
Confidence 999999999997432110 111111 12122 2457899999988764
No 147
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.38 E-value=5.6e-13 Score=124.26 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=86.9
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+++|.+|+|||||+|.|++..+ .....|+++...... . .+.+ ..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~---~~~~~~t~~~~~~~~------------~------~~~~----~~------ 70 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI---PTAYVPTVFENFSHV------------M------KYKN----EE------ 70 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEE------------E------EETT----EE------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC---CCccCCeeeeeeEEE------------E------EECC----EE------
Confidence 346899999999999999999999874 222233332211100 0 0000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH-HHHHHHHhC--CCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF-KRVIASLRG--NDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~-~~ll~~l~~--~~~~ 354 (547)
..+.++||||...-. .....++..+|++++|+|..+...-+.. ..++..+.. .+.|
T Consensus 71 ----------~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 129 (194)
T 3reg_A 71 ----------FILHLWDTAGQEEYD-----------RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK 129 (194)
T ss_dssp ----------EEEEEEEECCSGGGT-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE
T ss_pred ----------EEEEEEECCCcHHHH-----------HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 257899999964311 1223346899999999999863211121 223333332 3689
Q ss_pred EEEEeccCCCcChH--HH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQ--QL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~--~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+.... ++ ......+ .+..+... .+.+||++|.++.+
T Consensus 130 ~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 130 TVLVGLKVDLRKDGSDDVTKQEGDDL----CQKLGCVA--YIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEEECGGGCCTTTTCCCHHHHHHH----HHHHTCSC--EEECBTTTTBSHHH
T ss_pred EEEEEEChhhccCCCCcccHHHHHHH----HHhcCCCE--EEEeecCCCCCHHH
Confidence 99999999986421 00 0111111 12223332 37899999998764
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.38 E-value=6.7e-14 Score=149.92 Aligned_cols=151 Identities=18% Similarity=0.269 Sum_probs=97.2
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
..++|+++|++|+|||||+|+|.+..+ . ....+++|.... ...+...+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~--~-~~~~~giT~~i~----------------------~~~v~~~~g------ 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV--A-AMEAGGITQHIG----------------------AFLVSLPSG------ 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH--H-HSSSCCBCCCTT----------------------SCCBCSSCS------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--c-cccCCceeEEEe----------------------EEEEEeCCC------
Confidence 457899999999999999999998774 2 222233322110 000000000
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
..++|+||||+..-... ....+..+|++|+|+|+.+ +...+..+.+..+...+.|+++
T Consensus 52 ----------~~i~~iDTPGhe~f~~~-----------~~~~~~~aD~vILVVDa~d-g~~~qt~e~l~~~~~~~vPiIV 109 (537)
T 3izy_P 52 ----------EKITFLDTPGHAAFSAM-----------RARGTQVTDIVILVVAADD-GVMKQTVESIQHAKDAHVPIVL 109 (537)
T ss_dssp ----------SCCBCEECSSSCCTTTS-----------BBSSSBSBSSCEEECBSSS-CCCHHHHHHHHHHHTTTCCEEE
T ss_pred ----------CEEEEEECCChHHHHHH-----------HHHHHccCCEEEEEEECCC-CccHHHHHHHHHHHHcCCcEEE
Confidence 37899999998642111 1112478999999999988 6778888899888888999999
Q ss_pred EeccCCCcChH--HHHHHHHHHHHhhhhcc-C-CCCcEEEEecccCCCCCCC
Q 008954 358 VLNKADQVDTQ--QLMRVYGALMWSLGKVL-N-TPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 358 VlNK~D~~~~~--~l~~~~~~l~~~l~~~~-~-~~~v~~v~isa~~~~~l~~ 405 (547)
|+||+|+.... .+....... .... . ...++.+++||++|.|+++
T Consensus 110 ViNKiDl~~~~~~~v~~~l~~~----~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 110 AINKCDKAEADPEKVKKELLAY----DVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CCBSGGGTTTSCCSSSSHHHHT----TSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEecccccccchHHHHHHHHhh----hhhHHhcCCCceEEEEECCCCCCchh
Confidence 99999987421 111111110 1111 1 1235668999999998875
No 149
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.38 E-value=4.5e-13 Score=126.81 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=88.0
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+|||||+|.|++..+ .....|+++...... . .+.+- .
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~---~~~~~~t~~~~~~~~------------~------~~~~~----~------- 56 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSAN------------V------AVDGQ----I------- 56 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCSSCCCEEEE------------E------ECSSC----E-------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC---CccCCCccceeEEEE------------E------EECCE----E-------
Confidence 46799999999999999999998774 222223332211100 0 00000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhC--CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRG--NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~--~~~~i 355 (547)
..+.++||||...-. .....++..+|++|+|+|..+...-+... .++..+.. .+.|+
T Consensus 57 ---------~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 116 (212)
T 2j0v_A 57 ---------VNLGLWDTAGQEDYS-----------RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPI 116 (212)
T ss_dssp ---------EEEEEECCCCCCCCC-----------C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE
T ss_pred ---------EEEEEEECCCcHHHH-----------HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 268999999985321 12233468999999999997632212222 33444433 27899
Q ss_pred EEEeccCCCcChHHH---------HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQL---------MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l---------~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+....+. ......+ .+..+. ...+.+||++|.++++
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~----~~~~~~--~~~~~~Sa~~g~gi~~ 169 (212)
T 2j0v_A 117 VLVGTKLDLRDDKGYLADHTNVITSTQGEEL----RKQIGA--AAYIECSSKTQQNVKA 169 (212)
T ss_dssp EEEEECHHHHTCHHHHHTCSSCCCHHHHHHH----HHHHTC--SEEEECCTTTCTTHHH
T ss_pred EEEEeCHHhhhCccccccccCCCCHHHHHHH----HHHcCC--ceEEEccCCCCCCHHH
Confidence 999999998764332 1111112 121222 2347899999998764
No 150
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.37 E-value=7.2e-13 Score=124.16 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=84.1
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
.....|+++|.+|+|||||+|.|++..+ .....|++...... . ..+.+ .
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~-~-----------------~~~~~-----~----- 66 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY---PTEYIPTAFDNFSA-V-----------------VSVDG-----R----- 66 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEE-E-----------------EEETT-----E-----
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCcccceeEE-E-----------------EEECC-----E-----
Confidence 3457899999999999999999998773 22222333221110 0 00000 0
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhC--CCC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRG--NDD 353 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~--~~~ 353 (547)
...+.++||||...-. .....++..+|++++|+|..+...-+... .++..+.. .+.
T Consensus 67 ----------~~~~~i~Dt~G~~~~~-----------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 125 (201)
T 2q3h_A 67 ----------PVRLQLCDTAGQDEFD-----------KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA 125 (201)
T ss_dssp ----------EEEEEEEECCCSTTCS-----------SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSS
T ss_pred ----------EEEEEEEECCCCHHHH-----------HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 0257799999985421 01223468999999999998632222222 23333332 278
Q ss_pred eEEEEeccCCCcChHHHHHHH---------HHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 354 KIRVVLNKADQVDTQQLMRVY---------GALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~---------~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
|+++|.||+|+.........+ ......+.+..+. ...+.+||++|.++++
T Consensus 126 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~ 184 (201)
T 2q3h_A 126 PIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA--ASYIECSALTQKNLKE 184 (201)
T ss_dssp CEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC--SEEEECCTTTCTTHHH
T ss_pred CEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC--cEEEEEecCCCCCHHH
Confidence 999999999997532111000 0000011122221 2347899999998764
No 151
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.37 E-value=9.1e-13 Score=130.01 Aligned_cols=123 Identities=19% Similarity=0.280 Sum_probs=77.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+++|.+|+|||||+|+|+|..+ ..+++.++++....... .+ ..+
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~--~~~~~~~~~t~~~~~~~-------------~~----~~~-------------- 86 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERV--VSISPFQSEGPRPVMVS-------------RS----RAG-------------- 86 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSSCCCSSCEEEE-------------EE----ETT--------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCcceeeEEEE-------------Ee----eCC--------------
Confidence 5799999999999999999999886 56666555543221100 00 001
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHH--hhcCCeEEEEecCCCCCCCHHHHHHHHHHhCC-C----
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWF--AAKCDLILLLFDPHKLDISDEFKRVIASLRGN-D---- 352 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~--~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~-~---- 352 (547)
..+.++||||+.+... .... +......+ ...+|++|+|+|.........+.++++.+... +
T Consensus 87 --------~~l~iiDTpG~~~~~~--~~~~--~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~ 154 (270)
T 1h65_A 87 --------FTLNIIDTPGLIEGGY--INDM--ALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 154 (270)
T ss_dssp --------EEEEEEECCCSEETTE--ECHH--HHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred --------eEEEEEECCCCCCCcc--chHH--HHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccc
Confidence 2689999999975321 1000 11111112 24799999997654434555555666665432 2
Q ss_pred CeEEEEeccCCCcCh
Q 008954 353 DKIRVVLNKADQVDT 367 (547)
Q Consensus 353 ~~iivVlNK~D~~~~ 367 (547)
.|+++|+||+|+..+
T Consensus 155 ~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 155 NKAIVALTHAQFSPP 169 (270)
T ss_dssp GGEEEEEECCSCCCG
T ss_pred cCEEEEEECcccCCc
Confidence 589999999999754
No 152
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.37 E-value=7.9e-13 Score=125.69 Aligned_cols=117 Identities=20% Similarity=0.225 Sum_probs=72.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+|+|.+|+|||||+|.|++..+ .....|+++...... . .+.+ ..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~---~~~~~~t~~~~~~~~------------~------~~~~----~~------ 74 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTAC------------L------ETEE----QR------ 74 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEE------------E------EC------CE------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC---CCCcCCeeeeeEEEE------------E------EECC----EE------
Confidence 457899999999999999999999874 222233332221100 0 0000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHH-HHHHHHHHhC--CCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDE-FKRVIASLRG--NDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~-~~~ll~~l~~--~~~~ 354 (547)
..+.|+||||...-. .....++..+|++|+++|..+...-.. ...++..+.. .+.|
T Consensus 75 ----------~~l~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p 133 (214)
T 3q3j_B 75 ----------VELSLWDTSGSPYYD-----------NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR 133 (214)
T ss_dssp ----------EEEEEEEECCSGGGT-----------TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE
T ss_pred ----------EEEEEEECCCCHhHH-----------HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 268899999974311 122334689999999999987322222 2233444433 3789
Q ss_pred EEEEeccCCCcC
Q 008954 355 IRVVLNKADQVD 366 (547)
Q Consensus 355 iivVlNK~D~~~ 366 (547)
+++|.||+|+..
T Consensus 134 iilv~nK~Dl~~ 145 (214)
T 3q3j_B 134 VLLIGCKTDLRT 145 (214)
T ss_dssp EEEEEECGGGGG
T ss_pred EEEEEEChhhcc
Confidence 999999999964
No 153
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.37 E-value=7.2e-13 Score=126.68 Aligned_cols=148 Identities=15% Similarity=0.222 Sum_probs=82.9
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce-eEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR-FVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...|+|+|.+|+|||||+|+|++..+ .. ...|+.+. +... . ..+.+ .
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~--~~-~~~~t~~~~~~~~------------~------~~~~~-----~------ 60 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEF--NM-DSKSTIGVEFATR------------T------LEIEG-----K------ 60 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCC--CC-------CCSEEEE------------E------EEETT-----E------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC--CC-CCCCcccceeEEE------------E------EEECC-----E------
Confidence 36799999999999999999999885 22 22233221 1110 0 00000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ 354 (547)
...+.|+||||..... .....++..+|++|+|+|..+....+....++..+. ..+.|
T Consensus 61 ---------~~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p 120 (223)
T 3cpj_B 61 ---------RIKAQIWDTAGQERYR-----------AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA 120 (223)
T ss_dssp ---------EEEEEEECCTTTTTTT-----------CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE
T ss_pred ---------EEEEEEEECCCccchh-----------hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe
Confidence 0268999999975321 112334689999999999986322223333344443 34789
Q ss_pred EEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|+||+|+....++. .....+ .+.. .+..+.+||+++.++++
T Consensus 121 iilv~nK~Dl~~~~~v~~~~~~~~----~~~~---~~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 121 VGLIGNKSDLAHLRAVPTEESKTF----AQEN---QLLFTETSALNSENVDK 165 (223)
T ss_dssp EEEEECCGGGGGGCCSCHHHHHHH----HHHT---TCEEEECCCC-CCCHHH
T ss_pred EEEEEECcccccccccCHHHHHHH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 99999999997532111 111111 1111 23457899999998764
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.36 E-value=2.3e-12 Score=134.65 Aligned_cols=103 Identities=21% Similarity=0.126 Sum_probs=69.7
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EEEEeccCCCcC
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IRVVLNKADQVD 366 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-iivVlNK~D~~~ 366 (547)
..+.|+||||+.+ |...+...+..+|++|+|+|+.+ +...+..+++..+...+.| +++|+||+|+.+
T Consensus 75 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 75 RHYSHVDCPGHAD-----------YIKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp CEEEEEECCCSGG-----------GHHHHHHHHTTCSSEEEEEETTT-CCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred eEEEEEECCChHH-----------HHHHHHHHHHHCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEEECccccC
Confidence 3789999999863 22345555789999999999987 5667777788777777888 899999999985
Q ss_pred hHH-HHHHHHHHHHhhhhccCC--CCcEEEEecccCCCCC
Q 008954 367 TQQ-LMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPI 403 (547)
Q Consensus 367 ~~~-l~~~~~~l~~~l~~~~~~--~~v~~v~isa~~~~~l 403 (547)
.++ +......+...+.. .+. ..++.+++||++|.++
T Consensus 143 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~i~~SA~~g~~v 181 (405)
T 2c78_A 143 DPELLDLVEMEVRDLLNQ-YEFPGDEVPVIRGSALLALEQ 181 (405)
T ss_dssp CHHHHHHHHHHHHHHHHH-TTSCTTTSCEEECCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH-hcccccCCCEEEccHHHhhhh
Confidence 322 22222222111222 222 2345689999998764
No 155
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.36 E-value=1.6e-12 Score=127.62 Aligned_cols=122 Identities=20% Similarity=0.268 Sum_probs=76.3
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+|||||+|+|+|... +.+++.+.++....... ..+.+
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~--~~~~~~~~~t~~~~~~~-----------------~~~~~------------- 83 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQV--VRVSPFQAEGLRPVMVS-----------------RTMGG------------- 83 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCC--SCCCSSCC-CCCCEEEE-----------------EEETT-------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCcceeeEEEE-----------------EEECC-------------
Confidence 36799999999999999999999886 56666555443221100 00111
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHh--hcCCeEEEEecCCCCCCCHHHHHHHHHHhCC-----
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA--AKCDLILLLFDPHKLDISDEFKRVIASLRGN----- 351 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~aD~illv~d~~~~~~~~~~~~ll~~l~~~----- 351 (547)
..+.|+||||+.+... ... .+......++ ..+|++|+|++............+++.+...
T Consensus 84 ---------~~l~liDTpG~~~~~~--~~~--~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~ 150 (262)
T 3def_A 84 ---------FTINIIDTPGLVEAGY--VNH--QALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEI 150 (262)
T ss_dssp ---------EEEEEEECCCSEETTE--ECH--HHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGG
T ss_pred ---------eeEEEEECCCCCCccc--chH--HHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhh
Confidence 2789999999975321 110 0111111121 3889999997665434555555666555432
Q ss_pred CCeEEEEeccCCCc
Q 008954 352 DDKIRVVLNKADQV 365 (547)
Q Consensus 352 ~~~iivVlNK~D~~ 365 (547)
..|+++|+||+|+.
T Consensus 151 ~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 151 WCKTLLVLTHAQFS 164 (262)
T ss_dssp GGGEEEEEECTTCC
T ss_pred hcCEEEEEeCcccC
Confidence 24899999999986
No 156
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.36 E-value=2.4e-12 Score=136.51 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=67.6
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCH-------HHHHHHHHHhCCCCe-EEEEec
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISD-------EFKRVIASLRGNDDK-IRVVLN 360 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~-------~~~~ll~~l~~~~~~-iivVlN 360 (547)
.+.|+||||+.. |...+...+..+|++|+|+|+.+ +..+ +..+.+..+...+.| +++|+|
T Consensus 86 ~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN 153 (458)
T 1f60_A 86 QVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGV-GEFEAGISKDGQTREHALLAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSH-HHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred eEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCc-CccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence 699999999753 22334445789999999999976 2222 445555555555665 999999
Q ss_pred cCCCcC--hHHHHHHHHHHHHhhhhccCCC--CcEEEEecccCCCCCCCC
Q 008954 361 KADQVD--TQQLMRVYGALMWSLGKVLNTP--EVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 361 K~D~~~--~~~l~~~~~~l~~~l~~~~~~~--~v~~v~isa~~~~~l~~~ 406 (547)
|+|+.+ .+.+......+...+.. .++. .++.+++||++|.++.+.
T Consensus 154 K~Dl~~~~~~~~~~i~~~~~~~l~~-~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 154 KMDSVKWDESRFQEIVKETSNFIKK-VGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHH-HTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHH-cCCCccCceEEEeecccCcCcccc
Confidence 999983 33333333332211122 2221 345689999999999863
No 157
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.36 E-value=1.3e-12 Score=138.83 Aligned_cols=107 Identities=15% Similarity=0.218 Sum_probs=63.6
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCC------CHHHHHHHHHHhCCCCe-EEEEecc
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDI------SDEFKRVIASLRGNDDK-IRVVLNK 361 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~------~~~~~~ll~~l~~~~~~-iivVlNK 361 (547)
.+.|+||||+..- .......+..+|++|+|+|+.+... ..+..+.+..+...+.| +++|+||
T Consensus 122 ~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK 190 (467)
T 1r5b_A 122 RFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINK 190 (467)
T ss_dssp EEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEEC
T ss_pred EEEEEECCCcHHH-----------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEEC
Confidence 7899999998531 2223344689999999999987210 12344555555556777 9999999
Q ss_pred CCCcC----hHHHHHHHHHHHHhhhhccCCC---CcEEEEecccCCCCCCCC
Q 008954 362 ADQVD----TQQLMRVYGALMWSLGKVLNTP---EVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 362 ~D~~~----~~~l~~~~~~l~~~l~~~~~~~---~v~~v~isa~~~~~l~~~ 406 (547)
+|+.. .+.+......+...+....+.. .++.+++||++|.++.+.
T Consensus 191 ~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 191 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 99964 2333333323322222221332 456789999999999863
No 158
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.05 E-value=6.3e-14 Score=131.93 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=88.4
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+++|.+|+|||||+|.|++..+ .....+++..... ....+.+ .
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~------------------~~~~~~~-----~------ 76 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYS------------------ANVMVDG-----K------ 76 (204)
Confidence 346799999999999999999997663 1112222211110 0000000 0
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhCC--CCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRGN--DDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~~--~~~ 354 (547)
...+.++||||.... ......++..+|++++|+|..+...-+... .++..+... +.|
T Consensus 77 ---------~~~l~i~Dt~G~~~~-----------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~p 136 (204)
T 3th5_A 77 ---------PVNLGLWDTAGQEDY-----------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP 136 (204)
Confidence 025779999997531 123444578999999999987633222222 344444433 789
Q ss_pred EEEEeccCCCcChHHHHHHHHH---------HHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~---------l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+............ ....+.+..+. ...+.+||++|.|+++
T Consensus 137 iilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~vSA~~g~gi~~ 194 (204)
T 3th5_A 137 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKT 194 (204)
Confidence 9999999999754321111100 00011111111 1347899999999886
No 159
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=3.6e-13 Score=139.87 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=20.4
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR 237 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~ 237 (547)
.|+|+|.+|+|||||+|+|+|.. +.+++.|+||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~---~~~~~~p~tT~ 35 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD---VEIANYPFTTI 35 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---CcccCCCCccc
Confidence 59999999999999999999988 67788887765
No 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.36 E-value=4.8e-12 Score=136.00 Aligned_cols=66 Identities=23% Similarity=0.306 Sum_probs=55.7
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcC
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVD 366 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~ 366 (547)
.+.|+||||+.+ |...+...+..+|++|+|+|+.+ +...+...++..+...+.|+++|+||+|+..
T Consensus 83 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~allVvDa~~-g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 83 LINLLDTPGHAD-----------FTEDTYRTLTAVDSALMVIDAAK-GVEPRTIKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEEECCCCSTT-----------CCHHHHHGGGGCSEEEEEEETTT-CSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred EEEEEECCCchh-----------HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 789999999864 22345556789999999999988 6778888899988888999999999999974
No 161
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.35 E-value=7.2e-13 Score=135.78 Aligned_cols=117 Identities=21% Similarity=0.393 Sum_probs=79.7
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+|||.||||||||+|+|+|.. +.+++.|.||+..+. +...+.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~---~~v~~~pftT~~~~~-----------------------g~~~~~~-------- 118 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE---SEAAEYEFTTLVTVP-----------------------GVIRYKG-------- 118 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC---CCGGGTCSSCCCEEE-----------------------EEEEETT--------
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC---CcccCCCCceeeeee-----------------------EEEEeCC--------
Confidence 579999999999999999999988 788899998876652 1111111
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC-----CCCe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG-----NDDK 354 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~-----~~~~ 354 (547)
.++.|+||||+..+..+... ........+.+||++++|+|+.++ . .....+...|.. ...|
T Consensus 119 --------~~i~l~D~pGl~~~a~~~~~----~g~~~l~~i~~ad~il~vvD~~~p-~-~~~~~i~~EL~~~~~~l~~k~ 184 (376)
T 4a9a_A 119 --------AKIQMLDLPGIIDGAKDGRG----RGKQVIAVARTCNLLFIILDVNKP-L-HHKQIIEKELEGVGIRLNKTP 184 (376)
T ss_dssp --------EEEEEEECGGGCCC-----C----HHHHHHHHHHHCSEEEEEEETTSH-H-HHHHHHHHHHHHTTEEETCCC
T ss_pred --------cEEEEEeCCCccCCchhhhH----HHHHHHHHHHhcCccccccccCcc-H-HHHHHHHHHHHHhhHhhccCC
Confidence 37899999999876322211 112344557899999999999863 1 222222233332 2567
Q ss_pred EEEEeccCCC
Q 008954 355 IRVVLNKADQ 364 (547)
Q Consensus 355 iivVlNK~D~ 364 (547)
.++++||+|.
T Consensus 185 ~~i~~nK~d~ 194 (376)
T 4a9a_A 185 PDILIKKKEK 194 (376)
T ss_dssp CCEEEEECSS
T ss_pred hhhhhhHhhh
Confidence 8899999996
No 162
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.35 E-value=2.1e-12 Score=119.90 Aligned_cols=147 Identities=12% Similarity=0.105 Sum_probs=84.4
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+|+|.+|+|||||+|.|++..+ .....|+++...... .. +.+ ..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~---~~~~~~t~~~~~~~~------------~~------~~~----~~------- 68 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF---ISEYDPNLEDTYSSE------------ET------VDH----QP------- 68 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC---CSCCCTTCCEEEEEE------------EE------ETT----EE-------
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC---CcccCCCccceeeEE------------EE------ECC----EE-------
Confidence 46899999999999999999999874 222233333211100 00 000 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC------CC
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG------ND 352 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~------~~ 352 (547)
..+.|+||||..... . + ..++..+|++++++|..+...-+....++..+.. .+
T Consensus 69 ---------~~l~i~Dt~G~~~~~--------~---~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ 127 (187)
T 3c5c_A 69 ---------VHLRVMDTADLDTPR--------N---C-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRS 127 (187)
T ss_dssp ---------EEEEEEECCC---CC--------C---T-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ---------EEEEEEECCCCCcch--------h---H-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCC
Confidence 268899999975310 0 1 2357889999999999763222222333333322 47
Q ss_pred CeEEEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecc-cCCCCCCC
Q 008954 353 DKIRVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGS-FNDKPING 405 (547)
Q Consensus 353 ~~iivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa-~~~~~l~~ 405 (547)
.|+++|.||+|+....++. .....+ .+..+ +..+.+|| +++.++++
T Consensus 128 ~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 128 IPALLLGNKLDMAQYRQVTKAEGVAL----AGRFG---CLFFEVSACLDFEHVQH 175 (187)
T ss_dssp CCEEEEEECGGGGGGCSSCHHHHHHH----HHHHT---CEEEECCSSSCSHHHHH
T ss_pred CCEEEEEECcchhhcCccCHHHHHHH----HHHcC---CcEEEEeecCccccHHH
Confidence 8999999999986431110 011111 11122 24578999 88888764
No 163
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.35 E-value=3.2e-12 Score=133.87 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=67.7
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCC-CeEEEEeccCCCcC
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGND-DKIRVVLNKADQVD 366 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~-~~iivVlNK~D~~~ 366 (547)
..+.|+||||+.+ |.......+..+|++|+|+|+.+.....+..+.+..+...+ .++++|+||+|+.+
T Consensus 83 ~~i~iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 83 RRVSFIDAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp EEEEEEECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred cEEEEEECCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 3789999999742 22233344678999999999987322555555555444333 47999999999998
Q ss_pred hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCC
Q 008954 367 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 367 ~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~ 404 (547)
.++....+..+...+... ....++.+++||++|.++.
T Consensus 152 ~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi~ 188 (410)
T 1kk1_A 152 KEKALENYRQIKEFIEGT-VAENAPIIPISALHGANID 188 (410)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSHH
T ss_pred HHHHHHHHHHHHHHHHhc-CcCCCeEEEeeCCCCCCHH
Confidence 665444444432222221 1134556899999998874
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.35 E-value=6.8e-12 Score=129.13 Aligned_cols=101 Identities=10% Similarity=0.008 Sum_probs=69.3
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeE-EEEec-cCCCcC
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKI-RVVLN-KADQVD 366 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~i-ivVlN-K~D~~~ 366 (547)
.+.|+||||+.+ |.......+..+|++|+|+| .. +...+..+.+..+...+.|. ++++| |+|+ +
T Consensus 61 ~i~iiDtPGh~~-----------f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~ 126 (370)
T 2elf_A 61 NMVFVDAHSYPK-----------TLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLLGFKHGIIALTRSDST-H 126 (370)
T ss_dssp EEEEEECTTTTT-----------CHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C
T ss_pred EEEEEECCChHH-----------HHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C
Confidence 799999999864 22234445689999999999 55 67777777777777777887 99999 9999 6
Q ss_pred hHHHHHHHHHHHHhhhhccCCCCcEEEE--ecccC---CCCCC
Q 008954 367 TQQLMRVYGALMWSLGKVLNTPEVVRVY--IGSFN---DKPIN 404 (547)
Q Consensus 367 ~~~l~~~~~~l~~~l~~~~~~~~v~~v~--isa~~---~~~l~ 404 (547)
.+.+......+...+.. .....++.++ +||++ +.|++
T Consensus 127 ~~~~~~~~~~i~~~l~~-~~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 127 MHAIDELKAKLKVITSG-TVLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp HHHHHHHHHHHHHHTTT-STTTTCEEEECCCCTTSSSTTTTHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCCceEEEecccccccCcCCCCHH
Confidence 54444333333222222 1223456689 99999 76654
No 165
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.34 E-value=2.6e-11 Score=124.00 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=54.5
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChH
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQ 368 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~ 368 (547)
.+.|+||||+.... ..+...+|++++|+|+.... . ...+...+ ...+.++|+||+|+.+..
T Consensus 168 ~~iliDT~Gi~~~~--------------~~l~~~~d~vl~V~d~~~~~-~--~~~i~~~i--l~~~~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 168 DIILIETVGVGQSE--------------FAVADMVDMFVLLLPPAGGD-E--LQGIKRGI--IEMADLVAVTKSDGDLIV 228 (349)
T ss_dssp SEEEEECCCC--CH--------------HHHHTTCSEEEEEECCC-----------------CCSCSEEEECCCSGGGHH
T ss_pred CEEEEECCCcchhh--------------hhHHhhCCEEEEEEcCCcch-h--HHHhHHHH--HhcCCEEEEeeecCCCch
Confidence 68999999986321 11257999999999987521 1 11111112 245789999999998654
Q ss_pred HHHHHHHHHHHhhhhccC---CCCcEEEEecccCCCCCCC
Q 008954 369 QLMRVYGALMWSLGKVLN---TPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 369 ~l~~~~~~l~~~l~~~~~---~~~v~~v~isa~~~~~l~~ 405 (547)
........+...+..... ......+++||++|.|+.+
T Consensus 229 ~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~ 268 (349)
T 2www_A 229 PARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISE 268 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHH
Confidence 433333333222222111 0123457899999999874
No 166
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.34 E-value=1.8e-12 Score=119.80 Aligned_cols=116 Identities=18% Similarity=0.201 Sum_probs=71.0
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+++|.+|+|||||+|.|++..+ .....|+++...... . .+.+ ..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~---~~~~~~t~~~~~~~~------------~------~~~~----~~------- 54 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTAS------------F------EIDT----QR------- 54 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEE------------E------ECSS----CE-------
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEE------------E------EECC----EE-------
Confidence 36799999999999999999999874 222233332211100 0 0000 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH-HHHHHHHhC--CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF-KRVIASLRG--NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~-~~ll~~l~~--~~~~i 355 (547)
..+.++||||...-. .....++..+|++|+++|..+...-+.. ..++..+.. .+.|+
T Consensus 55 ---------~~~~i~Dt~G~~~~~-----------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi 114 (184)
T 1m7b_A 55 ---------IELSLWDTSGSPYYD-----------NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM 114 (184)
T ss_dssp ---------EEEEEEEECCSGGGT-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEE
T ss_pred ---------EEEEEEECCCChhhh-----------hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCE
Confidence 268999999974311 1122246899999999999763211222 122333332 36899
Q ss_pred EEEeccCCCcC
Q 008954 356 RVVLNKADQVD 366 (547)
Q Consensus 356 ivVlNK~D~~~ 366 (547)
++|.||+|+..
T Consensus 115 ilv~nK~Dl~~ 125 (184)
T 1m7b_A 115 LLVGCKSDLRT 125 (184)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEEcchhhc
Confidence 99999999974
No 167
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.34 E-value=1.8e-12 Score=119.98 Aligned_cols=155 Identities=16% Similarity=0.173 Sum_probs=82.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCC-CcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGP-EPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~-~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
.+|+|+|++|||||||+|.|+|... ...+. .|+++....... ..+... .+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~--~~~~~~~~t~g~~~~~~~-----------------~~~~~~--~~~------- 54 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKK--SDLGMQSATVGIDVKDWP-----------------IQIRDK--RKR------- 54 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEEE-----------------C-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--ccCCCcceeccEEeEEee-----------------eccccC--CCC-------
Confidence 5799999999999999999999642 22222 233322211000 000000 000
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCC-CHHHHHHHHHHhC--CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDI-SDEFKRVIASLRG--NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~-~~~~~~ll~~l~~--~~~~i 355 (547)
-..+.++||||...- . .....++..+|++++++|.++... -+.....+..+.. .+.|+
T Consensus 55 --------~~~~~i~Dt~G~~~~-----~------~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~pi 115 (184)
T 2zej_A 55 --------DLVLNVWDFAGREEF-----Y------STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPV 115 (184)
T ss_dssp ---------CEEEEEEECSHHHH-----H------TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEE
T ss_pred --------ceEEEEEecCCCHHH-----H------HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcE
Confidence 026889999996321 1 122344678999999999865211 1222333333322 36899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCc-EEEEecccCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEV-VRVYIGSFNDK 401 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v-~~v~isa~~~~ 401 (547)
++|.||+|+.....+..........+.+..+.+.. ..+.+||+++.
T Consensus 116 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (184)
T 2zej_A 116 ILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEES 162 (184)
T ss_dssp EEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCC
T ss_pred EEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCc
Confidence 99999999987654432222222223333333321 24789999875
No 168
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.34 E-value=2.2e-12 Score=121.82 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=72.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+|+|.+|+|||||+|.|++..+ .....|+++...... . .+.+ ..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~---~~~~~~t~~~~~~~~------------~------~~~~----~~------ 75 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTAS------------F------EIDT----QR------ 75 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC---CSSCCCCSEEEEEEE------------E------ESSS----SE------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC---CCCcCCccceeEEEE------------E------EECC----EE------
Confidence 346899999999999999999999874 222233332211100 0 0000 00
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHH-HHHHHHHhC--CCCe
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEF-KRVIASLRG--NDDK 354 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~-~~ll~~l~~--~~~~ 354 (547)
..+.|+||||...-. .....++..+|++|+++|..+...-+.. ..++..+.. .+.|
T Consensus 76 ----------~~l~i~Dt~G~~~~~-----------~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p 134 (205)
T 1gwn_A 76 ----------IELSLWDTSGSPYYD-----------NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK 134 (205)
T ss_dssp ----------EEEEEEEECCSGGGT-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE
T ss_pred ----------EEEEEEeCCCcHhhh-----------HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 268999999974311 1122346899999999999863211222 223333332 3689
Q ss_pred EEEEeccCCCcC
Q 008954 355 IRVVLNKADQVD 366 (547)
Q Consensus 355 iivVlNK~D~~~ 366 (547)
+++|.||+|+..
T Consensus 135 iilv~nK~Dl~~ 146 (205)
T 1gwn_A 135 MLLVGCKSDLRT 146 (205)
T ss_dssp EEEEEECGGGGG
T ss_pred EEEEEechhhcc
Confidence 999999999974
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.33 E-value=7e-12 Score=132.19 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=69.6
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCC-------CCHHHHHHHHHHhCCCC-eEEEEec
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLD-------ISDEFKRVIASLRGNDD-KIRVVLN 360 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~-------~~~~~~~ll~~l~~~~~-~iivVlN 360 (547)
.+.|+||||+.+- .......+..+|++|+|+|+.+ + ...+..+.+..+...+. ++++|+|
T Consensus 85 ~~~iiDtpG~~~f-----------~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviN 152 (435)
T 1jny_A 85 FFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVN 152 (435)
T ss_dssp EEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred EEEEEECCCcHHH-----------HHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEE
Confidence 7999999998652 2234445789999999999987 5 33455666655555565 5899999
Q ss_pred cCCCcC----hHHHHHHHHHHHHhhhhccCC--CCcEEEEecccCCCCCCCC
Q 008954 361 KADQVD----TQQLMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPINGE 406 (547)
Q Consensus 361 K~D~~~----~~~l~~~~~~l~~~l~~~~~~--~~v~~v~isa~~~~~l~~~ 406 (547)
|+|+.+ .+.+......+...+.. .+. ..++.+++||++|.++.+.
T Consensus 153 K~Dl~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 153 KMDLTEPPYDEKRYKEIVDQVSKFMRS-YGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp CGGGSSSTTCHHHHHHHHHHHHHHHHH-TTCCCTTCEEEECBTTTTBTTTBC
T ss_pred cccCCCccccHHHHHHHHHHHHHHHHH-cCCCcCCceEEEeecccCcccccc
Confidence 999986 22223333333222222 222 1356789999999999864
No 170
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.33 E-value=2.7e-12 Score=142.68 Aligned_cols=133 Identities=19% Similarity=0.197 Sum_probs=79.1
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeec-CCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVH-ADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~ 276 (547)
.-..|+|+|++|+|||||+|+|++... ............++ .+.......+|+++... ....+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~--~~~~~g~v~~~~~~-~D~~~~e~~~giTi~~~~~~~~~~~----------- 74 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTG--RIHKIGETHEGASQ-MDWMEQEQDRGITITSAATTAAWEG----------- 74 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHS--SCC--------------------------CCSEEEEEETT-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC--CccccccccCCcee-cccchhhhhcCceEeeeeEEEEECC-----------
Confidence 346799999999999999999996431 11000000000011 01001111223332110 0000111
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
..+.|+||||+.+ |...+...+..+|++|+++|+.+ +.+.+...++..+...+.|++
T Consensus 75 -----------~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~llVvDa~~-g~~~~~~~~~~~~~~~~~p~i 131 (693)
T 2xex_A 75 -----------HRVNIIDTPGHVD-----------FTVEVERSLRVLDGAVTVLDAQS-GVEPQTETVWRQATTYGVPRI 131 (693)
T ss_dssp -----------EEEEEECCCCCSS-----------CCHHHHHHHHHCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCCEE
T ss_pred -----------eeEEEEECcCCcc-----------hHHHHHHHHHHCCEEEEEECCCC-CCcHHHHHHHHHHHHcCCCEE
Confidence 3799999999964 12234556788999999999987 667777788888887889999
Q ss_pred EEeccCCCcCh
Q 008954 357 VVLNKADQVDT 367 (547)
Q Consensus 357 vVlNK~D~~~~ 367 (547)
+|+||+|+...
T Consensus 132 lviNK~Dl~~~ 142 (693)
T 2xex_A 132 VFVNKMDKLGA 142 (693)
T ss_dssp EEEECTTSTTC
T ss_pred EEEECCCcccc
Confidence 99999999753
No 171
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.32 E-value=3.8e-12 Score=132.60 Aligned_cols=103 Identities=16% Similarity=0.085 Sum_probs=68.2
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EEEEeccCCCcC
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IRVVLNKADQVD 366 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-iivVlNK~D~~~ 366 (547)
..+.|+||||+.+ |.......+..+|++|+++|+.+ +...+..+.+..+...+.| +++|+||+|+.+
T Consensus 66 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 66 RHYAHTDCPGHAD-----------YVKNMITGTAPLDGCILVVAAND-GPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp CEEEEEECSSHHH-----------HHHHHHHTSSCCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred eEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 3789999999853 22234445789999999999987 5667777777777777888 789999999985
Q ss_pred hHH-HHHHHHHHHHhhhhccCC--CCcEEEEecccCCCCC
Q 008954 367 TQQ-LMRVYGALMWSLGKVLNT--PEVVRVYIGSFNDKPI 403 (547)
Q Consensus 367 ~~~-l~~~~~~l~~~l~~~~~~--~~v~~v~isa~~~~~l 403 (547)
.++ +......+...+.. .+. ..++.+++||++|.+.
T Consensus 134 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~i~~SA~~g~n~ 172 (397)
T 1d2e_A 134 DSEMVELVELEIRELLTE-FGYKGEETPIIVGSALCALEQ 172 (397)
T ss_dssp CHHHHHHHHHHHHHHHHH-TTSCTTTSCEEECCHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHH-cCCCcccCcEEEeehhhcccc
Confidence 322 22222222111122 222 2355689999998763
No 172
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.31 E-value=3.5e-12 Score=138.34 Aligned_cols=166 Identities=22% Similarity=0.239 Sum_probs=91.5
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecC-CCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHA-DLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~-~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+|+|+.|+|||||+++|++..- ....... ... +..........|++..... ...|... .+.
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg--~i~~~~~---~~~-~~D~~~~ErerGITI~~~~~~~~~~~~--dg~------- 71 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTG--AISEREK---REQ-LLDTLDVERERGITVKMQAVRMFYKAK--DGN------- 71 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHT--C---------------------------CCCCSEEEEEECT--TSC-------
T ss_pred eEEEEECCCCCCHHHHHHHHHhccC--Ccccccc---ccc-ccccchhhhcccceeeeeEEEEEEEcC--CCC-------
Confidence 4699999999999999999997531 1111100 000 0111111112333321100 0001000 000
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
-..++|+||||+.+ |...+...+..+|.+|+|+|+.+ +...+....+..+...+.|+++|
T Consensus 72 --------~~~inliDTPGh~d-----------F~~ev~r~l~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~~ipiIvv 131 (600)
T 2ywe_A 72 --------TYKLHLIDTPGHVD-----------FSYEVSRALAACEGALLLIDASQ-GIEAQTVANFWKAVEQDLVIIPV 131 (600)
T ss_dssp --------EEEEEEECCCCSGG-----------GHHHHHHHHHTCSEEEEEEETTT-BCCHHHHHHHHHHHHTTCEEEEE
T ss_pred --------eEEEEEEECCCcHh-----------HHHHHHHHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHCCCCEEEE
Confidence 02688999999964 22334455789999999999987 56667777777666778999999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+||+|+.... ..++...+ .+.++......+++||++|.|+++
T Consensus 132 iNKiDl~~a~-~~~v~~el----~~~lg~~~~~vi~vSAktg~GI~~ 173 (600)
T 2ywe_A 132 INKIDLPSAD-VDRVKKQI----EEVLGLDPEEAILASAKEGIGIEE 173 (600)
T ss_dssp EECTTSTTCC-HHHHHHHH----HHTSCCCGGGCEECBTTTTBSHHH
T ss_pred EeccCccccC-HHHHHHHH----HHhhCCCcccEEEEEeecCCCchH
Confidence 9999997532 22222233 222333211237999999998754
No 173
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=6.6e-12 Score=119.13 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=85.1
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+|+|.+|||||||+|.++|... ..++..++++...... .+ .+.+ .
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~--~~~~~~~~~g~d~~~~-----------~i------~~~~-----~------- 85 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHD--SMDSDCEVLGEDTYER-----------TL------MVDG-----E------- 85 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCC--TTCCC---CCTTEEEE-----------EE------EETT-----E-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC--CCCCcCCccceeeEEE-----------EE------EECC-----e-------
Confidence 36799999999999999999998654 3444334433221100 00 0001 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC----CCCe
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----NDDK 354 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----~~~~ 354 (547)
...+.++||+|..... ..+...+...+|++|+|+|.++...-+....++..+.. .+.|
T Consensus 86 --------~~~l~~~Dt~g~~~~~----------~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p 147 (211)
T 2g3y_A 86 --------SATIILLDMWENKGEN----------EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 147 (211)
T ss_dssp --------EEEEEEECCTTTTHHH----------HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC
T ss_pred --------eeEEEEeecCCCcchh----------hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 0156789999975311 11223335678999999988752211222333333432 3689
Q ss_pred EEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 355 IRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 355 iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+++|.||+|+....++....+.. +....+ ...+.+||++|.++++
T Consensus 148 iilVgNK~DL~~~r~v~~~e~~~---~a~~~~---~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 148 IILVGNKSDLVRCREVSVSEGRA---CAVVFD---CKFIETSAAVQHNVKE 192 (211)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHH---HHHHHT---CEEEECBTTTTBSHHH
T ss_pred EEEEEEChHHhcCceEeHHHHHH---HHHHcC---CEEEEEeCCCCCCHHH
Confidence 99999999986432111111111 011122 2347899999999864
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.31 E-value=4e-13 Score=142.69 Aligned_cols=146 Identities=18% Similarity=0.271 Sum_probs=92.4
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeec-CCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVH-ADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~ 276 (547)
..+.|+++|++++|||||+|+|.+..+ ..+..+++| ..+. ..+.+.+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v---~~~e~~GIT------------------~~i~~~~v~~~~----------- 50 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV---ASGEAGGIT------------------QHIGAYHVETEN----------- 50 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH---SBTTBCCCC------------------CCSSCCCCCTTS-----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC---ccccCCCee------------------EeEEEEEEEECC-----------
Confidence 347899999999999999999998653 112111111 1000 0111111
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
..++|+||||+..-... . ...+..+|++++|+|+.+ +...+..+.+..+...+.|++
T Consensus 51 -----------~~i~~iDTPGhe~f~~~-~----------~~~~~~aD~aILVVda~~-g~~~qT~e~l~~~~~~~vPiI 107 (501)
T 1zo1_I 51 -----------GMITFLDTPGHAAFTSM-R----------ARGAQATDIVVLVVAADD-GVMPQTIEAIQHAKAAQVPVV 107 (501)
T ss_dssp -----------SCCCEECCCTTTCCTTS-B----------CSSSBSCSSEEEEEETTT-BSCTTTHHHHHHHHHTTCCEE
T ss_pred -----------EEEEEEECCCcHHHHHH-H----------HHHHhhCCEEEEEeeccc-CccHHHHHHHHHHHhcCceEE
Confidence 37899999998642111 1 112578999999999987 444555666777767789999
Q ss_pred EEeccCCCcCh--HHHHHHHHHHHHhhhh--ccC---CCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDT--QQLMRVYGALMWSLGK--VLN---TPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~--~~l~~~~~~l~~~l~~--~~~---~~~v~~v~isa~~~~~l~~ 405 (547)
+++||+|+... +++.. .+.. .+. ...++.+++||++|.|+++
T Consensus 108 VviNKiDl~~~~~~~v~~-------~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 108 VAVNKIDKPEADPDRVKN-------ELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEEECSSSSTTCCCCTTC-------CCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EEEEeccccccCHHHHHH-------HHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 99999999742 11110 0111 010 0135678999999999886
No 175
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.30 E-value=1.4e-11 Score=117.22 Aligned_cols=149 Identities=20% Similarity=0.243 Sum_probs=86.4
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+|+|.+|+|||||++.+++..+ .....||.+....... . .+.+. .
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f---~~~~~~Tig~d~~~k~-----------~------~~~~~----~------- 61 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSF---DNTYQATIGIDFLSKT-----------M------YLEDR----T------- 61 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCC---C----------CEEEE-----------E------ECSSC----E-------
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCC---CCCcCCccceEEEEEE-----------E------Eecce----E-------
Confidence 35799999999999999999998774 2222333331111000 0 00000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH---hCCCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL---RGNDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l---~~~~~~i 355 (547)
-.+.|+||+|... |..+...+...+|++++++|..+...-+.....+..+ ...+.|+
T Consensus 62 ---------v~l~iwDtaGqe~-----------~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~pi 121 (216)
T 4dkx_A 62 ---------IRLQLWDTAGLER-----------FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 121 (216)
T ss_dssp ---------EEEEEECCSCTTT-----------CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEE
T ss_pred ---------EEEEEEECCCchh-----------hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeE
Confidence 2678999999753 1234566789999999999987632222223333333 3457899
Q ss_pred EEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+.+..++.. ....+ ++..+ ...+.+||++|.++++
T Consensus 122 ilVgNK~Dl~~~r~V~~~e~~~~----a~~~~---~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 122 MLVGNKTDLADKRQVSIEEGERK----AKELN---VMFIETSAKAGYNVKQ 165 (216)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHH----HHHHT---CEEEEEBTTTTBSHHH
T ss_pred EEEeeccchHhcCcccHHHHhhH----HHHhC---CeeEEEeCCCCcCHHH
Confidence 99999999864321111 01111 12222 2347899999999875
No 176
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.30 E-value=4.9e-12 Score=137.63 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=51.8
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcC
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVD 366 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~ 366 (547)
.++|+||||+.+-. .... ..+..+|++|+|+|+.+ +...+..+.+..+...+.|+++|+||+|+..
T Consensus 71 ~i~liDTPGhe~F~-~~~~----------r~~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 71 GLFFIDTPGHEAFT-TLRK----------RGGALADLAILIVDINE-GFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEEECCCTTSCCT-TSBC----------SSSBSCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred CEEEEECCCcHHHH-HHHH----------HHHhhCCEEEEEEECCC-CccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 58999999986421 1111 12478999999999988 6777778888888888999999999999963
No 177
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.30 E-value=4.1e-12 Score=138.06 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=87.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeec-CCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVH-ADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+|+|+.++|||||+++|++..- ....... ... ++.........|++.... ....|... .+.
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg--~i~~~~~---~~~-~~D~~~~ErerGiTi~~~~~~~~~~~~--~g~------- 69 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICG--GLSDREM---EAQ-VLDSMDLERERGITIKAQSVTLDYKAS--DGE------- 69 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTT--C------------------------------CEEEEEEECT--TSC-------
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--Ccccccc---ccc-ccccchhhhcccceeeeeEEEEEEecC--CCC-------
Confidence 4699999999999999999997542 1111100 000 111111111223333110 00111100 000
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
-..++|+||||+.+ |.......+..+|.+|+|+|+.+ +...+....+..+...+.|+++|
T Consensus 70 --------~~~l~liDTPGh~d-----------F~~ev~~~l~~aD~aILVVDa~~-gv~~qt~~~~~~~~~~~ipiIvV 129 (599)
T 3cb4_D 70 --------TYQLNFIDTPGHVD-----------FSYEVSRSLAACEGALLVVDAGQ-GVEAQTLANCYTAMEMDLEVVPV 129 (599)
T ss_dssp --------EEEEEEEECCCCGG-----------GHHHHHHHHHHCSEEEEEEETTT-CCCTHHHHHHHHHHHTTCEEEEE
T ss_pred --------eEEEEEEECCCchH-----------HHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEe
Confidence 02689999999954 22345555789999999999987 55555666666666678999999
Q ss_pred eccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 359 LNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 359 lNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+||+|+.+.. ..++...+ .+.++......+++||++|.|+++
T Consensus 130 iNKiDl~~a~-~~~v~~ei----~~~lg~~~~~vi~vSAktg~GI~~ 171 (599)
T 3cb4_D 130 LNKIDLPAAD-PERVAEEI----EDIVGIDATDAVRCSAKTGVGVQD 171 (599)
T ss_dssp EECTTSTTCC-HHHHHHHH----HHHTCCCCTTCEEECTTTCTTHHH
T ss_pred eeccCccccc-HHHHHHHH----HHHhCCCcceEEEeecccCCCchh
Confidence 9999997532 11222222 122222211137999999988753
No 178
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.29 E-value=7.5e-13 Score=126.25 Aligned_cols=149 Identities=16% Similarity=0.131 Sum_probs=86.9
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+++|.+|+|||||+|.+++.... ..+.+.++++......... ...
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~-----------------~~~------------ 63 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTN-----------------RGP------------ 63 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHT-CEEETTTTEEEEEEEEEET-----------------TEE------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEEEC-----------------CEE------------
Confidence 4468999999999999999995543320 3333433333322211000 000
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC--CCCeE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG--NDDKI 355 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~--~~~~i 355 (547)
..+.++||||.... . .....++..+|++++|+|..+.........++..+.. .+.|+
T Consensus 64 ----------~~~~i~Dt~G~~~~-----~------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ 122 (221)
T 3gj0_A 64 ----------IKFNVWDTAGQEKF-----G------GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI 122 (221)
T ss_dssp ----------EEEEEEEECSGGGT-----S------CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCE
T ss_pred ----------EEEEEEeCCChHHH-----h------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE
Confidence 26899999995321 1 1234457899999999999863211222233333322 36899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+.+........ .+ .+.. .+..+.+||+++.++.+
T Consensus 123 ilv~nK~Dl~~~~~~~~~~-~~----~~~~---~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 123 VLCGNKVDIKDRKVKAKSI-VF----HRKK---NLQYYDISAKSNYNFEK 164 (221)
T ss_dssp EEEEECTTSSSCSSCGGGC-CH----HHHH---TCEEEECBGGGTBTTTH
T ss_pred EEEEECCccccccccHHHH-HH----HHHc---CCEEEEEeCCCCCCHHH
Confidence 9999999997532111000 00 1111 23457899999999875
No 179
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.29 E-value=5.7e-12 Score=131.82 Aligned_cols=105 Identities=23% Similarity=0.230 Sum_probs=59.2
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCC-CeEEEEeccCCCcC
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGND-DKIRVVLNKADQVD 366 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~-~~iivVlNK~D~~~ 366 (547)
..+.|+||||+.+ |.......+..+|++|+|+|+.+.....+..+.+..+...+ .|+++|+||+|+.+
T Consensus 81 ~~i~iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 81 RRVSFVDSPGHET-----------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp EEEEEEECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSC
T ss_pred cEEEEEECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCC
Confidence 3799999999742 11222233578899999999987322555556555554444 47999999999986
Q ss_pred hHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCC
Q 008954 367 TQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 367 ~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~ 404 (547)
.++....+..+...+... ....++.+++||++|.+++
T Consensus 150 ~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi~ 186 (408)
T 1s0u_A 150 EKQAEENYEQIKEFVKGT-IAENAPIIPISAHHEANID 186 (408)
T ss_dssp TTTTTTHHHHHHHHHTTS-TTTTCCEEEC------CHH
T ss_pred HHHHHHHHHHHHHHHhhc-CCCCCeEEEeeCCCCCCHH
Confidence 533222222222112221 1234456899999998875
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.29 E-value=6.7e-12 Score=134.98 Aligned_cols=67 Identities=25% Similarity=0.340 Sum_probs=54.8
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
.+.|+||||+.+ |...+...+..+|.+|+|+|+.+ +.......++..+...+.|+++|+||+|+...
T Consensus 83 ~i~liDTPG~~d-----------f~~~~~~~l~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 83 LVNLLDTPGHED-----------FSEDTYRTLTAVDCCLMVIDAAK-GVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp EEEEECCCCSTT-----------CCHHHHHGGGGCSEEEEEEETTT-CSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred EEEEEECCCChh-----------HHHHHHHHHHHCCEEEEEEeCCc-cchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 789999999954 22234455789999999999987 56777788888888889999999999999754
No 181
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.28 E-value=2.9e-14 Score=133.76 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=80.8
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+|+|.+|+|||||+|+|++... .....++++....... ..+.+ .
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~-----~------- 80 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTY---TESYISTIGVDFKIRT-----------------IELDG-----K------- 80 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCC---CCHHHHHHCCSEEEEE-----------------EEETT-----E-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC---CCCcCCcccceEEEEE-----------------EEECC-----E-------
Confidence 46899999999999999999998774 2222333332111000 00000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCC---CCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGN---DDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~---~~~i 355 (547)
...+.|+||||..... . ....++..+|++|+|+|..+...-+....++..+... +.|+
T Consensus 81 --------~~~~~i~Dt~G~~~~~--~---------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ 141 (199)
T 3l0i_B 81 --------TIKLQIWDTAGQERFR--T---------ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK 141 (199)
T ss_dssp --------EEEEEEECCTTCTTCC--C---------CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEE
T ss_pred --------EEEEEEEECCCcHhHH--H---------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCE
Confidence 0268899999965321 0 1223468999999999998743223344455555443 7899
Q ss_pred EEEeccCCCcChHHHHH-HHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMR-VYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~-~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|+||+|+....++.. ....+ .+... +..+.+||+++.++++
T Consensus 142 ilv~nK~Dl~~~~~v~~~~~~~~----~~~~~---~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 142 LLVGNKCDLTTKKVVDYTTAKEF----ADSLG---IPFLETSAKNATNVEQ 185 (199)
T ss_dssp EEC-CCSSCC--CCCCSCC-CHH----HHTTT---CCBCCCCC---HHHHH
T ss_pred EEEEECccCCccccCCHHHHHHH----HHHcC---CeEEEEECCCCCCHHH
Confidence 99999999874321100 00111 11122 2236889999877653
No 182
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.26 E-value=4.3e-12 Score=118.40 Aligned_cols=151 Identities=14% Similarity=0.090 Sum_probs=81.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+++|.+|||||||+|.++|... ..++..++++...... .+ .+.+- .
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~--~~~~~~~~~~~~~~~~-----------~~------~~~~~----~-------- 55 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHD--SMDSDXEVLGEDTYER-----------TL------MVDGE----S-------- 55 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSC--CC----GGGCTTEEEE-----------EE------EETTE----E--------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcC--CcCccccccceeEEEE-----------EE------EECCe----E--------
Confidence 5799999999999999999998653 4444434433222100 00 00000 0
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHH---HHh-CCCCeE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIA---SLR-GNDDKI 355 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~---~l~-~~~~~i 355 (547)
..+.++||+|..... +. +...+...+|++++|+|.++...-+....++. .+. ..+.|+
T Consensus 56 --------~~l~~~Dt~~~~~~~-----~~-----~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pi 117 (192)
T 2cjw_A 56 --------ATIILLDMWENKGEN-----EW-----LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 117 (192)
T ss_dssp --------EEEEEECCCCC---------CT-----TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCE
T ss_pred --------EEEEEEEeccCcchh-----hh-----HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeE
Confidence 156789999875311 11 11223467899999988875221122222322 222 247899
Q ss_pred EEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+.....+....+.. +....+ ...+.+||++|.++++
T Consensus 118 ilV~NK~Dl~~~r~v~~~~~~~---~a~~~~---~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 118 ILVGNKSDLVRXREVSVSEGRA---XAVVFD---XKFIETSAAVQHNVKE 161 (192)
T ss_dssp EEEEECTTCGGGCCSCHHHHHH---HHHHTT---CEEEECBTTTTBSHHH
T ss_pred EEEEechhhhccccccHHHHHH---HHHHhC---CceEEeccccCCCHHH
Confidence 9999999986432111111111 111121 2347899999998864
No 183
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.25 E-value=2.3e-11 Score=119.67 Aligned_cols=146 Identities=15% Similarity=0.163 Sum_probs=83.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCC---ccccCCceeeecCCCCCCCccccccchhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPD---ERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~---~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
..++|+|++|+|||||+|.|+|... + +.+...+ .+.. .....+.+..++...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~---~-----~~G~i~~--~g~~i~~~~~~~~i~~v~q~~~--------------- 57 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV---S-----RKASSWN--REEKIPKTVEIKAIGHVIEEGG--------------- 57 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC----------------------CCCCCSCCEEEESCC------------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC---C-----CCCcccc--CCcccCcceeeeeeEEEeecCC---------------
Confidence 4699999999999999999999883 2 2222211 1110 000111122222110
Q ss_pred hhhhcccccccccceEEcCCCCCChhh-----hhhhcccChHHHHHHH-------------hhcCCeEEEEecCCCCCCC
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEK-----QRTQRTYDFTGVISWF-------------AAKCDLILLLFDPHKLDIS 338 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~-----~~~~~~~~~~~~~~~~-------------~~~aD~illv~d~~~~~~~ 338 (547)
+...++++|+||+..... +.+..... ....... +.++++.++++|...-+..
T Consensus 58 ---------~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~-~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~ 127 (270)
T 3sop_A 58 ---------VKMKLTVIDTPGFGDQINNENCWEPIEKYIN-EQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLR 127 (270)
T ss_dssp ----------CCEEEEECCCC--CCSBCTTCSHHHHHHHH-HHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCC
T ss_pred ---------CcCCceEEechhhhhhcccHHHHHHHHHHHH-HHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCC
Confidence 113678999999865210 01111000 0011111 2346888999997654778
Q ss_pred HHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhh
Q 008954 339 DEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSL 381 (547)
Q Consensus 339 ~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l 381 (547)
..+.++++.+... .++++|+||+|.++.+++......+...+
T Consensus 128 ~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l 169 (270)
T 3sop_A 128 PLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSEFKQRVRKEL 169 (270)
T ss_dssp HHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 8889999999887 99999999999999887766665554433
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.25 E-value=2.1e-11 Score=135.42 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=55.4
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
..++|+||||+.+ |...+...+..+|.+|+++|+.+ +...+...++..+...+.|+++|+||+|+...
T Consensus 77 ~~i~liDTPG~~d-----------f~~~~~~~l~~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 77 HRINIIDTPGHVD-----------FTIEVERSMRVLDGAIVVFDSSQ-GVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp EEEEEECCCSSTT-----------CHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred eEEEEEECcCccc-----------hHHHHHHHHHHCCEEEEEEECCC-CcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 3799999999964 23345566789999999999987 56777777888887788999999999999753
No 185
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.25 E-value=1.2e-11 Score=133.87 Aligned_cols=97 Identities=27% Similarity=0.458 Sum_probs=87.1
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcCC
Q 008954 8 ITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAGR 87 (547)
Q Consensus 8 ~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g~ 87 (547)
.|.. ++++++|..+|..+|+. +|+|+|++++.+|.+++||.+.|.+||.++|.+++|.|+++||+.+|+|+.++++|.
T Consensus 450 ~w~~-~~~~~~y~~~F~~~~~~-~g~i~g~~a~~~~~~s~Lp~~~L~~IW~l~D~~~~g~L~~~eF~~am~Li~~~~~g~ 527 (550)
T 2qpt_A 450 EWVV-TKDKSKYDEIFYNLAPA-DGKLSGSKAKTWMVGTKLPNSVLGRIWKLSDVDRDGMLDDEEFALASHLIEAKLEGH 527 (550)
T ss_dssp -CTT-TTTHHHHHHHHHHTCCS-SSEECHHHHHHHHHHTTCCHHHHHHHHHHHCSSCSSSEEHHHHHHHHHHHHHHHHSC
T ss_pred CCCC-HHHHHHHHHHHHhcCCC-CCeecHHHHHHHHHHcCCCHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHHcCC
Confidence 4664 67899999999999964 699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhccCCCCCCCCCCCCCCcc
Q 008954 88 EITSDILKSGGLMENTEPPSMEGLE 112 (547)
Q Consensus 88 ~~~~~~~~~~~~~~~~~lp~~~~~~ 112 (547)
++|..++. .+.+|+.....
T Consensus 528 ~lP~~lp~------~l~p~s~r~~~ 546 (550)
T 2qpt_A 528 GLPTNLPR------RLVPPSKRRQK 546 (550)
T ss_dssp CCCSSCCG------GGSCSSCCCC-
T ss_pred CCCCCCCc------ccCChhhCCCC
Confidence 99999887 67777666543
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.24 E-value=7.4e-12 Score=127.69 Aligned_cols=99 Identities=17% Similarity=0.084 Sum_probs=57.1
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
..+.|+||||+..... .....+|++++|+|+.... .. ..+.. ...+.|.++|+||+|+...
T Consensus 149 ~~i~liDTpG~~~~~~--------------~~~~~aD~vl~Vvd~~~~~---~~-~~l~~-~~~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 149 YDVVIVETVGVGQSET--------------EVARMVDCFISLQIAGGGD---DL-QGIKK-GLMEVADLIVINKDDGDNH 209 (341)
T ss_dssp CSEEEEEEECCTTHHH--------------HHHTTCSEEEEEECC----------CCCCH-HHHHHCSEEEECCCCTTCH
T ss_pred CCEEEEeCCCccchHH--------------HHHHhCCEEEEEEeCCccH---HH-HHHHH-hhhcccCEEEEECCCCCCh
Confidence 3799999999975321 1248999999999986421 11 00100 0013578999999999876
Q ss_pred HHHHHHHHHHHHhhhhccCC-C--CcEEEEecccCCCCCCC
Q 008954 368 QQLMRVYGALMWSLGKVLNT-P--EVVRVYIGSFNDKPING 405 (547)
Q Consensus 368 ~~l~~~~~~l~~~l~~~~~~-~--~v~~v~isa~~~~~l~~ 405 (547)
.+.......+...+...-.. . ....+++||++|.|+++
T Consensus 210 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~ 250 (341)
T 2p67_A 210 TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDE 250 (341)
T ss_dssp HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHH
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHH
Confidence 44443333332211111110 0 23457999999999875
No 187
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.23 E-value=2.6e-10 Score=115.90 Aligned_cols=28 Identities=25% Similarity=0.081 Sum_probs=25.4
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCC
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCN 223 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~ 223 (547)
+..+.+|+|+|+||||||||+|.|+|..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999999999865
No 188
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=4.6e-11 Score=122.67 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=43.3
Q ss_pred CCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCC
Q 008954 323 CDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKP 402 (547)
Q Consensus 323 aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~ 402 (547)
+|++++++++........+..+++.+. .+.|+++|+||+|+.+..++......+... .....+..+++||+++.+
T Consensus 146 v~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~----~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 146 VHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDE----IEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHHHHHHHHHH----TTCC-CCSCCCC------
T ss_pred eEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHHHHHHHHHH----HHHCCCCEEeCCCcCCCc
Confidence 457888888644356666667777765 578999999999999876665433333221 111223346788888876
No 189
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.23 E-value=6.8e-12 Score=135.89 Aligned_cols=155 Identities=18% Similarity=0.179 Sum_probs=81.4
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
...+|+++|.+|||||||+|.|++..+ .....|+.+....... .++...+.......+
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~---~~~~~~t~g~~~~~~~-------~~~~~~v~~~~~~~~------------ 97 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETF---DPKESQTHGLNVVTKQ-------APNIKGLENDDELKE------------ 97 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEE-------GGGSGGGTTCSTTTT------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceEEEEec-------cccccceeecCCCce------------
Confidence 346799999999999999999999874 2222222222111000 000000000000001
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCC--CCeE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGN--DDKI 355 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~--~~~i 355 (547)
..+.++||||..... .....++.++|++|+|+|+++. +....++..+... +.|+
T Consensus 98 ----------~~~~i~Dt~G~e~~~-----------~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pv 153 (535)
T 3dpu_A 98 ----------CLFHFWDFGGQEIMH-----------ASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPV 153 (535)
T ss_dssp ----------CEEEEECCCSCCTTT-----------TTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCE
T ss_pred ----------EEEEEEECCcHHHHH-----------HHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCE
Confidence 368999999954311 1233457789999999999763 3334455555442 5899
Q ss_pred EEEeccCCCcChHHHH-HHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLM-RVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~-~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+....++. ...... .... ....+.+||++|.|+++
T Consensus 154 ilV~NK~Dl~~~~~v~~~~~~~~----~~~~---~~~~~~vSA~~g~gi~e 197 (535)
T 3dpu_A 154 IVVMNKIDENPSYNIEQKKINER----FPAI---ENRFHRISCKNGDGVES 197 (535)
T ss_dssp EEEECCTTTCTTCCCCHHHHHHH----CGGG---TTCEEECCC-----CTT
T ss_pred EEEEECCCcccccccCHHHHHHH----HHhc---CCceEEEecCcccCHHH
Confidence 9999999997532211 111111 1112 22358999999999986
No 190
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.22 E-value=1.2e-11 Score=125.17 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=86.9
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|.+|+|||||+|.+++..+ .....+++ ....... . .+.+ .
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~---~~~~~~t~-~~~~~~~-----------~------~~~~-----~------- 201 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTV-FDNYSAN-----------V------MVDG-----K------- 201 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC---CCSCCCCS-EEEEEEE-----------E------EETT-----E-------
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC---CcccCCcc-cceeEEE-----------E------EECC-----E-------
Confidence 46799999999999999999998774 22222333 2221100 0 0000 0
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH-HHHHHHhC--CCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK-RVIASLRG--NDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~-~ll~~l~~--~~~~i 355 (547)
...+.++||||..... .....++..+|++++|+|.++...-.... .++..+.. .+.|+
T Consensus 202 --------~~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ 262 (332)
T 2wkq_A 202 --------PVNLGLWDTAGLEDYD-----------RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI 262 (332)
T ss_dssp --------EEEEEEEEECCCGGGT-----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCE
T ss_pred --------EEEEEEEeCCCchhhh-----------HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcE
Confidence 0156799999975321 12223468999999999997632111211 23333332 27899
Q ss_pred EEEeccCCCcChHHHHHHHHH---------HHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 356 RVVLNKADQVDTQQLMRVYGA---------LMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 356 ivVlNK~D~~~~~~l~~~~~~---------l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
++|.||+|+............ ....+.+..+. ...+.+||++|.|+++
T Consensus 263 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~ 319 (332)
T 2wkq_A 263 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKT 319 (332)
T ss_dssp EEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHH
T ss_pred EEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCC--cEEEEecCCCCcCHHH
Confidence 999999999754322111110 00011111221 2457999999998764
No 191
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.20 E-value=2.3e-11 Score=134.57 Aligned_cols=133 Identities=21% Similarity=0.178 Sum_probs=83.0
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCC-CCCCCccccccchh
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHAD-LPFSGLTTFGGAFL 274 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~~ 274 (547)
+..+..|+|+|++|+|||||++.|++...+....+.. ..+. .+ ..........|++...+.. +.+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~-~~-~d~~~~e~~~giti~~~~~~~~~~---------- 72 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGT-TT-TDYTPEAKLHRTTVRTGVAPLLFR---------- 72 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTC-CS-SCCSHHHHHTTSCCSCEEEEEEET----------
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCc-cc-ccCCHHHHhcCCeEEecceEEeeC----------
Confidence 4567889999999999999999999766310011100 0000 00 0000000011222211100 0000
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK 354 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ 354 (547)
-..++|+||||+.+ |...+...+..+|.+++++|+.+ +......++++.+...+.|
T Consensus 73 ------------~~~~nliDTpG~~~-----------f~~~~~~~l~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~~ip 128 (665)
T 2dy1_A 73 ------------GHRVFLLDAPGYGD-----------FVGEIRGALEAADAALVAVSAEA-GVQVGTERAWTVAERLGLP 128 (665)
T ss_dssp ------------TEEEEEEECCCSGG-----------GHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCC
T ss_pred ------------CEEEEEEeCCCccc-----------hHHHHHHHHhhcCcEEEEEcCCc-ccchhHHHHHHHHHHccCC
Confidence 03689999999853 22345556789999999999877 6777778888888878899
Q ss_pred EEEEeccCCCc
Q 008954 355 IRVVLNKADQV 365 (547)
Q Consensus 355 iivVlNK~D~~ 365 (547)
+++|+||+|+.
T Consensus 129 ~ilv~NKiD~~ 139 (665)
T 2dy1_A 129 RMVVVTKLDKG 139 (665)
T ss_dssp EEEEEECGGGC
T ss_pred EEEEecCCchh
Confidence 99999999987
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.20 E-value=1.9e-10 Score=118.00 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=60.3
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
..+.|+||||+.... ...+..+|++|+|+|+..... ...+...+ .+.|+++|+||+|+...
T Consensus 172 ~~~iiiDTpGi~~~~--------------~~~~~~aD~vl~V~d~~~~~~---~~~l~~~~--~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 172 FDVILIETVGVGQSE--------------VAVANMVDTFVLLTLARTGDQ---LQGIKKGV--LELADIVVVNKADGEHH 232 (355)
T ss_dssp CCEEEEEECSCSSHH--------------HHHHTTCSEEEEEEESSTTCT---TTTCCTTS--GGGCSEEEEECCCGGGH
T ss_pred CCEEEEeCCCCCcHH--------------HHHHHhCCEEEEEECCCCCcc---HHHHHHhH--hhcCCEEEEECCCCcCh
Confidence 468999999987532 122589999999999864221 11111111 13588999999999866
Q ss_pred HHHHHHHHHHHHhhhhccC---CCCcEEEEecccCCCCCCC
Q 008954 368 QQLMRVYGALMWSLGKVLN---TPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 368 ~~l~~~~~~l~~~l~~~~~---~~~v~~v~isa~~~~~l~~ 405 (547)
.........+...+..... ....+.+++||++|.|+++
T Consensus 233 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~ 273 (355)
T 3p32_A 233 KEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAE 273 (355)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHH
T ss_pred hHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHH
Confidence 5444433333222222111 1123458999999999875
No 193
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.20 E-value=5.8e-11 Score=111.14 Aligned_cols=148 Identities=17% Similarity=0.199 Sum_probs=82.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.+|+|+|++|||||||+|.|+|..+ .. ...|+.+...... ...+.+ ..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~--~~-~~~~t~~~~~~~~-----------------~i~~~g-----~~------- 53 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEF--NL-ESKSTIGVEFATR-----------------SIQVDG-----KT------- 53 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC--CC----CCCSCEEEEE-----------------EEEETT-----EE-------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC--CC-CCCCccceeEEEE-----------------EEEECC-----EE-------
Confidence 5799999999999999999999874 22 2223322111000 000001 00
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHh---CCCCeEE
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLR---GNDDKIR 356 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~---~~~~~ii 356 (547)
-.+.++||||.... . .....+...+|++++++|..+.........++..+. ..+.|++
T Consensus 54 --------~~~~i~Dt~g~~~~-----~------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~ 114 (199)
T 2f9l_A 54 --------IKAQIWDTAGQERY-----R------RITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 114 (199)
T ss_dssp --------EEEEEEECSSGGGT-----T------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred --------EEEEEEECCCchhh-----h------hhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 15778999996421 1 122334578999999999876221122222333332 3468999
Q ss_pred EEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 357 VVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 357 vVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+|+||+|+....+. .....++ .. .+.+..+.+||+++.++.+
T Consensus 115 ~v~nK~Dl~~~~~~~~~~a~~l----~~---~~~~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 115 LVGNKSDLRHLRAVPTDEARAF----AE---KNNLSFIETSALDSTNVEE 157 (199)
T ss_dssp EEEECTTCGGGCCSCHHHHHHH----HH---HTTCEEEECCTTTCTTHHH
T ss_pred EEEECcccccccCcCHHHHHHH----HH---HcCCeEEEEeCCCCCCHHH
Confidence 99999998642111 0111112 11 1334456799999887653
No 194
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.19 E-value=1.8e-11 Score=139.12 Aligned_cols=164 Identities=21% Similarity=0.159 Sum_probs=89.0
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
...|+++|++|+|||||+|+|++... ..+.. ....+. ...........|++.... ...+. . +.
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~---~~G~a-~f~~~a-~lD~~~~ErerGITIdva-~v~f~---~-~~------- 358 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLA---KTYGG-AARAFD-QIDNAPEEKARGITINTS-HVEYD---T-PT------- 358 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHH---HHSCC-----------------------CCS-CEEEE---C-SS-------
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhc---ccccc-cccccc-ccccccccccCceeEEEE-EEEEc---C-CC-------
Confidence 36799999999999999999998521 00000 000000 001111111233333110 00000 0 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IRV 357 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-iiv 357 (547)
..+.|+||||+.+ |.......+..+|++|+|+|+.+ +...+..+.+..+...+.| +++
T Consensus 359 ---------~kI~IIDTPGHed-----------F~~~mi~gas~AD~aILVVDAtd-Gv~~QTrEhL~ll~~lgIP~IIV 417 (1289)
T 3avx_A 359 ---------RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLGRQVGVPYIIV 417 (1289)
T ss_dssp ---------CEEEEEECCCHHH-----------HHHHHHHTSCCCSEEEEEEETTT-CSCTTHHHHHHHHHHHTCSCEEE
T ss_pred ---------EEEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEcCCc-cCcHHHHHHHHHHHHcCCCeEEE
Confidence 3789999999853 22234445789999999999987 4455566666666656788 789
Q ss_pred EeccCCCcChHHH-HHHHHHHHHhhhhccCC--CCcEEEEecccCCC
Q 008954 358 VLNKADQVDTQQL-MRVYGALMWSLGKVLNT--PEVVRVYIGSFNDK 401 (547)
Q Consensus 358 VlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~--~~v~~v~isa~~~~ 401 (547)
|+||+|+.+.++. ......+..-+.+ .+. ..++.+++||++|.
T Consensus 418 VINKiDLv~d~e~le~i~eEi~elLk~-~G~~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 418 FLNKCDMVDDEELLELVEMEVRELLSQ-YDFPGDDTPIVRGSALKAL 463 (1289)
T ss_dssp EEECCTTCCCHHHHHHHHHHHHHHHHH-TTSCTTTCCEEECCSTTTT
T ss_pred EEeecccccchhhHHHHHHHHHHHHHh-ccccccceeEEEEEeccCC
Confidence 9999999863332 2222222111111 221 24566899999984
No 195
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.19 E-value=5.7e-12 Score=128.29 Aligned_cols=158 Identities=22% Similarity=0.250 Sum_probs=107.4
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc---------cCCceeee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT---------IPGNTIAV 257 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~---------~~g~~~~~ 257 (547)
.++++.+|. .|.+++|+|++|||||||+++|+|.. .|+.+.+.+ +|.+... ..++.+++
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~--------~p~~G~I~i--~G~~i~~~~~~~~~~~r~~Ig~v~ 111 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE--------RPTEGSVLV--DGQELTTLSESELTKARRQIGMIF 111 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS--------CCSEEEEEE--TTEECSSCCHHHHHHHHTTEEEEC
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC--------CCCceEEEE--CCEECCcCCHHHHHHHhCcEEEEe
Confidence 356676665 89999999999999999999999988 355555444 3322111 24567788
Q ss_pred cCCCCCCCccccccchhh-------hhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAFLS-------KFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
|....+..++..+|..+. +.+......++++.+.+-| .|+-+|+ ++||+. ++++++.+|++
T Consensus 112 Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVa-------IArAL~~~P~l 184 (366)
T 3tui_C 112 QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVA-------IARALASNPKV 184 (366)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHH-------HHHHTTTCCSE
T ss_pred CCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHHHhcCCCE
Confidence 887777777777776432 1111223344555555544 4677776 677665 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccCC
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKAD 363 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~D 363 (547)
+|++ +.+.++....++.++++.+.+ .+..+++|.+..+
T Consensus 185 LLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 185 LLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 9999 555554455667778887754 4788888877543
No 196
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.9e-11 Score=119.46 Aligned_cols=77 Identities=17% Similarity=0.102 Sum_probs=47.6
Q ss_pred cCCeEEEEecCCCC--CCCHHHHHHHHHH----hCCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEe
Q 008954 322 KCDLILLLFDPHKL--DISDEFKRVIASL----RGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYI 395 (547)
Q Consensus 322 ~aD~illv~d~~~~--~~~~~~~~ll~~l----~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~i 395 (547)
++|++|+|+|.++. ..-+.....+..+ ...+.|+++|.||+|+....++.. ...+ .+.. ..+..+.+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~-~~~~----~~~~--~~~~~~e~ 234 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRD-AHTF----ALSK--KNLQVVET 234 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHH-HHHH----HHTS--SSCCEEEC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHH-HHHH----HHhc--CCCeEEEE
Confidence 69999999999874 2223333333333 234789999999999986654422 1222 1111 12344789
Q ss_pred cccCCCCCCC
Q 008954 396 GSFNDKPING 405 (547)
Q Consensus 396 sa~~~~~l~~ 405 (547)
||+++.++++
T Consensus 235 SAk~g~gv~e 244 (255)
T 3c5h_A 235 SARSNVNVDL 244 (255)
T ss_dssp BTTTTBSHHH
T ss_pred ECCCCCCHHH
Confidence 9999998764
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.19 E-value=2.7e-11 Score=137.29 Aligned_cols=143 Identities=18% Similarity=0.189 Sum_probs=79.9
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeec-CCCCCCCccccccchhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVH-ADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~~~ 278 (547)
..|+|+|++|+|||||+|+|++... ...+..+.++++.- .......+|+++... ....|..-. . ....
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g--~i~~~~~~~~~~~D---~~~~E~~rgiTI~~~~~~~~~~~~~---~-~~~~-- 88 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAG--IISAAKAGEARFTD---TRKDEQERGITIKSTAISLYSEMSD---E-DVKE-- 88 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHB--CCBC---------------------CCCBCCCEEEEEEECCH---H-HHHH--
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC--CcccccCCCceeec---CchhhhhcceeEeeceeEEEecccc---c-cccc--
Confidence 4699999999999999999998643 34433333333221 111111223332100 000010000 0 0000
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVV 358 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivV 358 (547)
.......--..+.|+||||+.+ |...+...+..+|.+|+|+|+.+ +.+.+...++..+...+.|+++|
T Consensus 89 i~~~~~~~~~~i~liDTPG~~d-----------f~~~~~~~l~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~~~p~ilv 156 (842)
T 1n0u_A 89 IKQKTDGNSFLINLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDTIE-GVCVQTETVLRQALGERIKPVVV 156 (842)
T ss_dssp CSSCCCSSEEEEEEECCCCCCS-----------SCHHHHHHHHTCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccccCCCceEEEEECcCchh-----------hHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCeEEE
Confidence 0000000013689999999974 22345556789999999999987 66777777777776778999999
Q ss_pred eccCCCc
Q 008954 359 LNKADQV 365 (547)
Q Consensus 359 lNK~D~~ 365 (547)
+||+|+.
T Consensus 157 iNK~D~~ 163 (842)
T 1n0u_A 157 INKVDRA 163 (842)
T ss_dssp EECHHHH
T ss_pred EECCCcc
Confidence 9999987
No 198
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=6.1e-11 Score=123.00 Aligned_cols=146 Identities=14% Similarity=0.181 Sum_probs=81.1
Q ss_pred CCCCCcE--EEEeeCCCCChhHHHHHHHhCCCCCCCCCC-CcccceeEEEEeCCCccccCCceeeecCCCCCCCcccccc
Q 008954 195 DFDAKPM--VMLLGQYSTGKTTFIKHLLRCNYPGAHIGP-EPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGG 271 (547)
Q Consensus 195 ~~~~g~~--V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~-~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 271 (547)
.+..|.. ++|+|++|+|||||+|+|+|..+.+..+.. .+.+++. +++..++.. +
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-------------~i~~v~Q~~----~------ 92 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-------------SNTYDLQES----N------ 92 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-------------EEEEEEEC------------
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-------------eEEEEeecC----c------
Confidence 3457888 999999999999999999998752212211 1111111 111111211 0
Q ss_pred chhhhhhhhcccccccccceEEcCCCCCChhhh-----hhhccc--ChHHHHHHH---------hhcC--Ce-EEEEecC
Q 008954 272 AFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQ-----RTQRTY--DFTGVISWF---------AAKC--DL-ILLLFDP 332 (547)
Q Consensus 272 ~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~-----~~~~~~--~~~~~~~~~---------~~~a--D~-illv~d~ 332 (547)
+...++++|+||+...... .+...+ .+....... ..++ |+ ++|+.|+
T Consensus 93 --------------l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~ 158 (427)
T 2qag_B 93 --------------VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPT 158 (427)
T ss_dssp --------------CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCC
T ss_pred --------------cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCC
Confidence 0126889999998753100 000000 000001111 0122 33 5566776
Q ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHH
Q 008954 333 HKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMW 379 (547)
Q Consensus 333 ~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~ 379 (547)
.. +.+..+.++++.+. .+.++|+|+||+|.+++.++......+..
T Consensus 159 ~~-~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 159 GH-SLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp C----CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 55 67788889999987 67899999999999998887776665543
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.16 E-value=8.6e-11 Score=122.35 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=72.7
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCC-C-----cccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGP-E-----PTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFL 274 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~-~-----~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 274 (547)
.|+|+|++|+|||||+|.|+|... ...+. . +.|..... .+..++. .+
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~--~~~~~~~~~~~~~~t~~~~~------------i~~v~q~----~~--------- 85 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL--YSPEYPGPSHRIKKTVQVEQ------------SKVLIKE----GG--------- 85 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC--CCCCCCSCC-----CCEEEE------------EECC------------------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC--CCCCCCCcccCCccceeeee------------EEEEEec----CC---------
Confidence 589999999999999999999885 11110 0 00110000 0001110 00
Q ss_pred hhhhhhcccccccccceEEcCCCCCChhhh-----hh--------hccc-ChHHHHHHHhhcC--CeEEEEecCCCCCCC
Q 008954 275 SKFECSQMSHPLLDQVTFVDTPGVLSGEKQ-----RT--------QRTY-DFTGVISWFAAKC--DLILLLFDPHKLDIS 338 (547)
Q Consensus 275 ~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~-----~~--------~~~~-~~~~~~~~~~~~a--D~illv~d~~~~~~~ 338 (547)
+...++++||||+...... .+ ...+ +...++++++.++ +++|++.+++..++.
T Consensus 86 -----------~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~ 154 (418)
T 2qag_C 86 -----------VQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK 154 (418)
T ss_dssp ------------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC
T ss_pred -----------cccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC
Confidence 0126899999999753100 00 0000 0001223334444 456777666422556
Q ss_pred HHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHH
Q 008954 339 DEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGAL 377 (547)
Q Consensus 339 ~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l 377 (547)
..+..+++.+.. +.++++|+||+|+++..++......+
T Consensus 155 ~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k~~i 192 (418)
T 2qag_C 155 PLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQI 192 (418)
T ss_dssp HHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHHHHH
Confidence 666778888875 78999999999999876665433333
No 200
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.15 E-value=6.5e-11 Score=123.20 Aligned_cols=156 Identities=16% Similarity=0.276 Sum_probs=90.4
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhh
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 275 (547)
+..+..|+|+|+||||||||||+|+|.. ..++..+.|+....+ ..+.. .+ .
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~~---~~i~~~~ftTl~p~~------------G~V~~-----~~-----~---- 204 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRAH---PKIAPYPFTTLSPNL------------GVVEV-----SE-----E---- 204 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSSC---CEECCCTTCSSCCEE------------EEEEC-----SS-----S----
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCC---ccccCcccceeccee------------eEEEe-----cC-----c----
Confidence 4467889999999999999999999986 334444444321110 00000 00 0
Q ss_pred hhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC-----
Q 008954 276 KFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRG----- 350 (547)
Q Consensus 276 ~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~----- 350 (547)
..+.++||||+...... ...+.. .....+.+++.+|+++|..+ ....+.....+++..
T Consensus 205 ------------~~~~l~DtpGli~~a~~--~~~L~~--~fl~~~era~~lL~vvDls~-~~~~~ls~g~~el~~la~aL 267 (416)
T 1udx_A 205 ------------ERFTLADIPGIIEGASE--GKGLGL--EFLRHIARTRVLLYVLDAAD-EPLKTLETLRKEVGAYDPAL 267 (416)
T ss_dssp ------------CEEEEEECCCCCCCGGG--SCCSCH--HHHHHHTSSSEEEEEEETTS-CHHHHHHHHHHHHHHHCHHH
T ss_pred ------------ceEEEEeccccccchhh--hhhhhH--HHHHHHHHHHhhhEEeCCcc-CCHHHHHHHHHHHHHHhHHh
Confidence 26889999999754211 111111 11223578999999999861 222222223333221
Q ss_pred CCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 351 NDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 351 ~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
...|.++|+||+|.... +....+... +.. .....+.+||.++.++++
T Consensus 268 ~~~P~ILVlNKlDl~~~-~~~~~l~~~---l~~----~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 268 LRRPSLVALNKVDLLEE-EAVKALADA---LAR----EGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp HHSCEEEEEECCTTSCH-HHHHHHHHH---HHT----TTSCEEECCTTTCTTHHH
T ss_pred hcCCEEEEEECCChhhH-HHHHHHHHH---HHh----cCCeEEEEECCCccCHHH
Confidence 25789999999999876 322222111 111 123347999999988764
No 201
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.15 E-value=9.8e-12 Score=119.88 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=98.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc----------cCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT----------IPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~----------~~g~~~~~ 257 (547)
++++.++. .|..++|+|++|||||||++.|+|.. .|+++.+.+ +|..... ..+...++
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~--------~p~~G~I~~--~g~~~~~~~~~~~~~~~~~~i~~v~ 89 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD--------KPTEGEVYI--DNIKTNDLDDDELTKIRRDKIGFVF 89 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEE--TTEECTTCCHHHHHHHHHHHEEEEC
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--------CCCceEEEE--CCEEcccCCHHHHHHHhhccEEEEe
Confidence 45665554 89999999999999999999999988 355555443 3322111 11355677
Q ss_pred cCCCCCCCccccccchhhh----------hhhhcccccccccceEEc-----CCCCCCh-hhhhhhcccChHHHHHHHhh
Q 008954 258 HADLPFSGLTTFGGAFLSK----------FECSQMSHPLLDQVTFVD-----TPGVLSG-EKQRTQRTYDFTGVISWFAA 321 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~ll~~l~lvD-----TPG~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (547)
|....+..++..++..+.. .+......+++..+.+.+ .|+-+|+ ++|++. ++++++.
T Consensus 90 Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~-------iAral~~ 162 (235)
T 3tif_A 90 QQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA-------IARALAN 162 (235)
T ss_dssp TTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH-------HHHHHTT
T ss_pred cCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH-------HHHHHHc
Confidence 7776677777776653211 111112223344444432 3555665 667655 8999999
Q ss_pred cCCeEEEE--ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEecc
Q 008954 322 KCDLILLL--FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNK 361 (547)
Q Consensus 322 ~aD~illv--~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK 361 (547)
+|+++|++ +.+.++.....+.++++.+... +..+++|-+.
T Consensus 163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 99999999 4444444445666777777543 7788887664
No 202
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.13 E-value=2.2e-11 Score=124.67 Aligned_cols=156 Identities=15% Similarity=0.206 Sum_probs=104.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----cccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----RTIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----~~~~g~~~~~~~~~~~ 263 (547)
++++.++. .|.+++|+|++|||||||+++|+|.. .|+.+.+.+ .|... ....++.+++|....|
T Consensus 18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--------~p~~G~I~i--~G~~~~~~~~~~r~ig~VfQ~~~l~ 87 (381)
T 3rlf_A 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE--------TITSGDLFI--GEKRMNDTPPAERGVGMVFQSYALY 87 (381)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS--------CCSEEEEEE--TTEECTTCCGGGSCEEEECTTCCCC
T ss_pred EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC--------CCCCeEEEE--CCEECCCCCHHHCCEEEEecCCcCC
Confidence 56666655 89999999999999999999999998 355555443 33211 1124567788888888
Q ss_pred CCccccccchhh-------hhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLS-------KFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..+|.... +.+......++++.+.+-+ .|+-+|+ ++|++. ++++++.+|+++|++
T Consensus 88 p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVa-------iArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVA-------IGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHH-------HHHHHHHCCSEEEEEST
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHH-------HHHHHHcCCCEEEEECC
Confidence 888888876432 1111222334444444433 4566665 667655 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEeccC
Q 008954 330 FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNKA 362 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK~ 362 (547)
+.+.+.....+..++++.+.+ .+.++++|-+..
T Consensus 161 ts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred CcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 445443344566677777754 478888877654
No 203
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.12 E-value=2.9e-10 Score=126.47 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=83.1
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeec-CCCCCCCccccccchhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVH-ADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~ 276 (547)
.-..|+|+|+.|+|||||++.|+...- .............+..+.+ .....|+++... ....+.+....+
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g--~~~~~g~v~~g~~~~D~~~-~E~~rgiTi~~~~~~~~~~~~~~~~------ 79 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTG--VNHKIGEVHDGAATMDWME-QEQERGITITSAATTAFWSGMAKQY------ 79 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcC--CcccccccCCCceeecChh-hHHhcCceeeeceEEEEECCccccC------
Confidence 346799999999999999999986431 1110000000011111111 111233332111 011111100000
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
-...++|+||||+.+ |...+...+..+|.+|+++|+.+ +...+...+++.+...+.|++
T Consensus 80 ---------~~~~i~liDTPG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~~ip~i 138 (704)
T 2rdo_7 80 ---------EPHRINIIDTPGHVD-----------FTIEVERSMRVLDGAVMVYCAVG-GVQPQSETVWRQANKYKVPRI 138 (704)
T ss_pred ---------CceeEEEEeCCCccc-----------hHHHHHHHHHHCCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCEE
Confidence 003789999999964 22345556789999999999987 566677778887777789999
Q ss_pred EEeccCCCcCh
Q 008954 357 VVLNKADQVDT 367 (547)
Q Consensus 357 vVlNK~D~~~~ 367 (547)
+|+||+|+...
T Consensus 139 lviNKiD~~~~ 149 (704)
T 2rdo_7 139 AFVNKMDRMGA 149 (704)
T ss_pred EEEeCCCcccc
Confidence 99999999754
No 204
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.12 E-value=7.2e-11 Score=127.50 Aligned_cols=131 Identities=18% Similarity=0.247 Sum_probs=83.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCC--CC-CcccceeEEEEeCCCccccCCceee-ecCCCCCCCccccccchhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHI--GP-EPTTDRFVVVMSGPDERTIPGNTIA-VHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v--~~-~~~T~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~~l~~~~~~~~~ 275 (547)
..|+|+|+.++|||||..+|+-..- ++. |. ...+..-..+++........|+++. .-..+.|.+
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG--~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~---------- 99 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGG--AIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD---------- 99 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTT--CHHHHHHHHHC--------------------CTTTEEEEEETT----------
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcC--cccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC----------
Confidence 4599999999999999999984331 110 00 0000000112222233345555551 111222322
Q ss_pred hhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeE
Q 008954 276 KFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKI 355 (547)
Q Consensus 276 ~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~i 355 (547)
..++|+||||+.+ |...+...+.-+|.+|+|+|+.. ++..+...+|+.+.+.+.|+
T Consensus 100 ------------~~iNlIDTPGHvD-----------F~~Ev~raL~~~DgAvlVvda~~-GV~~qT~~v~~~a~~~~lp~ 155 (548)
T 3vqt_A 100 ------------RVVNLLDTPGHQD-----------FSEDTYRVLTAVDSALVVIDAAK-GVEAQTRKLMDVCRMRATPV 155 (548)
T ss_dssp ------------EEEEEECCCCGGG-----------CSHHHHHHHHSCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCCE
T ss_pred ------------EEEEEEeCCCcHH-----------HHHHHHHHHHhcCceEEEeecCC-CcccccHHHHHHHHHhCCce
Confidence 3799999999974 44556667899999999999998 88899999999999999999
Q ss_pred EEEeccCCCcC
Q 008954 356 RVVLNKADQVD 366 (547)
Q Consensus 356 ivVlNK~D~~~ 366 (547)
++++||+|...
T Consensus 156 i~fINK~Dr~~ 166 (548)
T 3vqt_A 156 MTFVNKMDREA 166 (548)
T ss_dssp EEEEECTTSCC
T ss_pred EEEEecccchh
Confidence 99999999974
No 205
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.12 E-value=1.2e-10 Score=108.30 Aligned_cols=148 Identities=16% Similarity=0.203 Sum_probs=83.5
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
..+|+|+|++|||||||+|.|+|... +....|+.+...... ...+.+ ..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~---~~~~~~t~~~~~~~~-----------------~i~~~g-----~~------ 77 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF---NLESKSTIGVEFATR-----------------SIQVDG-----KT------ 77 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC---CCSCCCCCSEEEEEE-----------------EEEETT-----EE------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC---CCCCCCccceEEEEE-----------------EEEECC-----EE------
Confidence 46899999999999999999999884 222333333211100 000001 00
Q ss_pred hhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHH---hCCCCeE
Q 008954 279 CSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASL---RGNDDKI 355 (547)
Q Consensus 279 ~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l---~~~~~~i 355 (547)
-.+.++||||..... . ........++.+++++|..+....+....++..+ ...+.++
T Consensus 78 ---------~~~~i~Dt~g~~~~~------~-----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i 137 (191)
T 1oix_A 78 ---------IKAQIWDTAGLERYR------A-----ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVI 137 (191)
T ss_dssp ---------EEEEEEEECSCCSSS------C-----CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred ---------EEEEEEECCCCcchh------h-----hhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 145679999985310 1 1233457889999999987521111122233333 2346799
Q ss_pred EEEeccCCCcChHHH-HHHHHHHHHhhhhccCCCCcEEEEecccCCCCCC
Q 008954 356 RVVLNKADQVDTQQL-MRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPIN 404 (547)
Q Consensus 356 ivVlNK~D~~~~~~l-~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~ 404 (547)
++|+||+|+.+..+. .....++ .. .+.+..+.+||+++.++.
T Consensus 138 ~~v~nK~Dl~~~~~~~~~~a~~l----~~---~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 138 MLVGNKSDLRHLRAVPTDEARAF----AE---KNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHH----HH---HTTCEEEECCTTTCTTHH
T ss_pred EEEEECcccccccccCHHHHHHH----HH---HcCCEEEEEeCCCCCCHH
Confidence 999999998642110 0111122 11 133445678999887765
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.09 E-value=3.6e-11 Score=132.41 Aligned_cols=130 Identities=20% Similarity=0.206 Sum_probs=89.6
Q ss_pred EEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCcee-eecCCCCCCCccccccchhhhhhh
Q 008954 201 MVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTI-AVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 201 ~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
.|+|+|+.++|||||..+|+-..- .+........+.+ +++........|+++ .....+.|.+
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G--~i~~~g~v~~g~~-~~D~~~~EreRGITI~s~~~~~~~~~-------------- 66 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSG--AITELGSVDKGTT-RTDNTLLERQRGITIQTGITSFQWEN-------------- 66 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHT--CCSSCSSCCCSCC-STTCSTTHHHHSSCSSCCCCCCBCSS--------------
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC--CCccccccccCCc-ccCCcHHHHhCCCcEEeeeEEEEECC--------------
Confidence 389999999999999999984331 1111000000000 112222334456666 2223344443
Q ss_pred hcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Q 008954 280 SQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVL 359 (547)
Q Consensus 280 ~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVl 359 (547)
..++|+||||+.+ |...+...+.-+|.+|+|+|+.. ++..+...+|+.+...+.|.++++
T Consensus 67 --------~~iNlIDTPGH~D-----------F~~Ev~raL~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~~lp~i~~I 126 (638)
T 3j25_A 67 --------TKVNIIDTPGHMD-----------FLAEVYRSLSVLDGAILLISAKD-GVQAQTRILFHALRKMGIPTIFFI 126 (638)
T ss_dssp --------CBCCCEECCCSSS-----------THHHHHHHHTTCSEEECCEESSC-TTCSHHHHHHHHHHHHTCSCEECC
T ss_pred --------EEEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCeEEEE
Confidence 3799999999975 44556667899999999999988 788888899999998899999999
Q ss_pred ccCCCcCh
Q 008954 360 NKADQVDT 367 (547)
Q Consensus 360 NK~D~~~~ 367 (547)
||+|....
T Consensus 127 NKmDr~~a 134 (638)
T 3j25_A 127 NKIDQNGI 134 (638)
T ss_dssp EECCSSSC
T ss_pred eccccccC
Confidence 99998743
No 207
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.08 E-value=4.1e-11 Score=121.87 Aligned_cols=155 Identities=21% Similarity=0.312 Sum_probs=100.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCC--------ccccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPD--------ERTIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~--------~~~~~g~~~~~~~ 259 (547)
++++.++. .|.+++|+|++|||||||+++|+|.. .|+.+.+.+ .|.. .....++.+++|.
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--------~p~~G~I~i--~G~~i~~~~~~~~~~~r~ig~vfQ~ 88 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE--------QPDSGEISL--SGKTIFSKNTNLPVRERRLGYLVQE 88 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS--------CCSEEEEEE--TTEEEESSSCBCCGGGSCCEEECTT
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC--------CCCCcEEEE--CCEECcccccccchhhCCEEEEeCC
Confidence 56666655 89999999999999999999999998 344554443 2211 1113456778888
Q ss_pred CCCCCCccccccchhh-------hhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEE
Q 008954 260 DLPFSGLTTFGGAFLS-------KFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLIL 327 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~il 327 (547)
...|..++..+|.... +.+......++++.+.+-+ .|+-+|+ ++||+. ++++++.+|+++|
T Consensus 89 ~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRVa-------lArAL~~~P~lLL 161 (359)
T 3fvq_A 89 GVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAA-------LARALAPDPELIL 161 (359)
T ss_dssp CCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHH-------HHHHHTTCCSEEE
T ss_pred CcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEE
Confidence 7778888887776321 1111222334444554433 4566665 667665 8999999999999
Q ss_pred EE--ecCCCCCCCHHHHHHHHH-HhCCCCeEEEEecc
Q 008954 328 LL--FDPHKLDISDEFKRVIAS-LRGNDDKIRVVLNK 361 (547)
Q Consensus 328 lv--~d~~~~~~~~~~~~ll~~-l~~~~~~iivVlNK 361 (547)
++ +.+.+.....++.+.+.. .++.+.++++|-+.
T Consensus 162 LDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd 198 (359)
T 3fvq_A 162 LDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198 (359)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 99 555543334455544443 45567888887665
No 208
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.07 E-value=9.2e-11 Score=114.67 Aligned_cols=160 Identities=13% Similarity=0.226 Sum_probs=99.1
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc-------cCCceeeecC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT-------IPGNTIAVHA 259 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~-------~~g~~~~~~~ 259 (547)
.++++.+++ .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ +|..... ..+...+++.
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~i~~v~q~ 90 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL--------KADEGRVYF--ENKDITNKEPAELYHYGIVRTFQT 90 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEE--TTEECTTCCHHHHHHHTEEECCCC
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE--CCEECCCCCHHHHHhCCEEEEccC
Confidence 356777766 89999999999999999999999987 344454443 2221111 1234455565
Q ss_pred CCCCCCccccccchhhhh--------------------hhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHH
Q 008954 260 DLPFSGLTTFGGAFLSKF--------------------ECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTG 314 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~--------------------~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~ 314 (547)
...+..++..++..+... ........+++.+.+-+ .|+-+|+ ++|++.
T Consensus 91 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~------- 163 (257)
T 1g6h_A 91 PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE------- 163 (257)
T ss_dssp CGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH-------
T ss_pred CccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH-------
Confidence 544555555555422110 00111223344444322 2444554 666655
Q ss_pred HHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCc
Q 008954 315 VISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQV 365 (547)
Q Consensus 315 ~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~ 365 (547)
++++++.+++++|++ +.+.++.....+.++++.+.+.+..+++|-+..+.+
T Consensus 164 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 164 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 899999999999999 555554445566777777766678888888877654
No 209
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=99.07 E-value=2.1e-10 Score=95.06 Aligned_cols=71 Identities=25% Similarity=0.300 Sum_probs=65.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 7 PITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 7 ~~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
....+++++.++++++|+.+|.|++|+|+.+|++.+|+. ..++..++..+++.+|.|++|.|+|+||+.+|
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~m 98 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLL 98 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHHh
Confidence 356789999999999999999999999999999999998 45788999999999999999999999998765
No 210
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.07 E-value=7.5e-10 Score=112.73 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=57.6
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhh
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFE 278 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (547)
+..|+|+|.||+|||||+|+|++.. ..+++.|.||.... .| .....+..+..+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~---~~v~~~p~tTi~p~----------~g-------------~v~~~~~r~~~l~ 55 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG---IEAANYPFCTIEPN----------TG-------------VVPMPDPRLDALA 55 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC---------CCCCCCCC----------SS-------------EEECCCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CcccCCCCceECce----------EE-------------EEecCCcccceee
Confidence 4679999999999999999999987 56666665553211 00 0000000000111
Q ss_pred hhccccccc-ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCC
Q 008954 279 CSQMSHPLL-DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHK 334 (547)
Q Consensus 279 ~~~~~~~ll-~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~ 334 (547)
....|.... ..+.|+||||+..+....-..+-.| ...+.++|++++|+|+.+
T Consensus 56 ~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~f----l~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 56 EIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKF----LANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCH----HHHHHTCSEEEEEEECSC
T ss_pred eeecccceeeeEEEEEECCCCcccccccchHHHHH----HHHHHhcCeEEEEEecCC
Confidence 111111111 3689999999987532211111122 234689999999999875
No 211
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.07 E-value=4.7e-11 Score=113.25 Aligned_cols=160 Identities=14% Similarity=0.099 Sum_probs=99.9
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc-cccCCceeeecCCCCCCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE-RTIPGNTIAVHADLPFSG 265 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~-~~~~g~~~~~~~~~~~~~ 265 (547)
..+.+.++. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ ++... ........+++....+.+
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~--------~p~~G~I~~--~g~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL--------KPLKGEIIY--NGVPITKVKGKIFFLPEEIIVPRK 92 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS--------CCSEEEEEE--TTEEGGGGGGGEEEECSSCCCCTT
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCeEEEE--CCEEhhhhcCcEEEEeCCCcCCCC
Confidence 356666655 89999999999999999999999987 344444443 22111 112234456666555666
Q ss_pred ccccccchhh-hhhh----hcccccccccceEE--c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCC
Q 008954 266 LTTFGGAFLS-KFEC----SQMSHPLLDQVTFV--D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHK 334 (547)
Q Consensus 266 l~~~~~~~~~-~~~~----~~~~~~ll~~l~lv--D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~ 334 (547)
++..++..+. .... ......+++.+.+- + .|+-+|+ ++|++. ++++++.+++++|++ +.+.+
T Consensus 93 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~-------laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 93 ISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQ-------LASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp SBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHH-------HHHHTTSCCSEEEEESTTTTSC
T ss_pred CCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEECCCcCCC
Confidence 6666654321 1100 01112233333332 2 2333443 666654 899999999999999 55666
Q ss_pred CCCCHHHHHHHHHHhCCCCeEEEEeccCCCc
Q 008954 335 LDISDEFKRVIASLRGNDDKIRVVLNKADQV 365 (547)
Q Consensus 335 ~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~ 365 (547)
+.....+.+++..+.+.+..++++-+..+.+
T Consensus 166 ~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 166 EDSKHKVLKSILEILKEKGIVIISSREELSY 196 (214)
T ss_dssp TTTHHHHHHHHHHHHHHHSEEEEEESSCCTT
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 5666777888887765577888888877654
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.07 E-value=1.6e-11 Score=126.49 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=81.2
Q ss_pred CcEEEEeeCCCCChhHHHHHHHhC-----CCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccch
Q 008954 199 KPMVMLLGQYSTGKTTFIKHLLRC-----NYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAF 273 (547)
Q Consensus 199 g~~V~lvG~~~aGKSTLiN~Llg~-----~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 273 (547)
+..|+++|.+|+|||||+|+|+|. .. ..+++.|+||+...... + +
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~--~~~~~~~gtT~~~~~~~-------------------~------~--- 211 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNV--ITTSYFPGTTLDMIEIP-------------------L------E--- 211 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCC--CEEEECTTSSCEEEEEE-------------------C------S---
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccc--eeecCCCCeEEeeEEEE-------------------e------C---
Confidence 346999999999999999999997 33 56677777666443110 0 0
Q ss_pred hhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHh--hcCCeEEEEecCCCC-CCCHHHHHHHHHHhC
Q 008954 274 LSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFA--AKCDLILLLFDPHKL-DISDEFKRVIASLRG 350 (547)
Q Consensus 274 ~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~aD~illv~d~~~~-~~~~~~~~ll~~l~~ 350 (547)
..+.++||||+.+... ....+.. +....+. .+.|.+++++++... ... ....+..+..
T Consensus 212 --------------~~~~liDtPG~~~~~~--~~~~l~~-~~l~~~~~~~~i~~~~~~l~~~~~~~~g--~l~~l~~l~~ 272 (369)
T 3ec1_A 212 --------------SGATLYDTPGIINHHQ--MAHFVDA-RDLKIITPKREIHPRVYQLNEGQTLFFG--GLARLDYIKG 272 (369)
T ss_dssp --------------TTCEEEECCSCCCCSS--GGGGSCT-TTHHHHSCSSCCCCEEEEECTTEEEEET--TTEEEEEEES
T ss_pred --------------CCeEEEeCCCcCcHHH--HHHHHhH-HHHHHHhcccccCceEEEEcCCceEEEC--CEEEEEEccC
Confidence 2689999999986521 1111111 1122222 788999999998421 001 0111344555
Q ss_pred CCCeEEEEeccCCCcChHHHHHHHHHH
Q 008954 351 NDDKIRVVLNKADQVDTQQLMRVYGAL 377 (547)
Q Consensus 351 ~~~~iivVlNK~D~~~~~~l~~~~~~l 377 (547)
.+.|+++++||+|.+...++......+
T Consensus 273 ~~~~~~~v~~k~d~~~~~~~~~~~~~~ 299 (369)
T 3ec1_A 273 GRRSFVCYMANELTVHRTKLEKADSLY 299 (369)
T ss_dssp SSEEEEEEECTTSCEEEEEGGGHHHHH
T ss_pred CCceEEEEecCCcccccccHHHHHHHH
Confidence 678999999999998654443333333
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.07 E-value=3.2e-11 Score=124.04 Aligned_cols=136 Identities=11% Similarity=0.140 Sum_probs=79.8
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCC----CCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYP----GAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~----~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 275 (547)
..|+++|.+|+|||||+|+|+|.... ...+++.|+||+...... + +
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~-------------------~------~----- 210 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP-------------------L------D----- 210 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE-------------------S------S-----
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE-------------------e------c-----
Confidence 46999999999999999999997420 034566666655333100 0 0
Q ss_pred hhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHH--hhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCC
Q 008954 276 KFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWF--AAKCDLILLLFDPHKLDISDEFKRVIASLRGNDD 353 (547)
Q Consensus 276 ~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~--~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~ 353 (547)
..+.++||||+.+.. .....+.. +..... ..+.+.+++++++...-... ....+..+...+.
T Consensus 211 ------------~~~~liDtPG~~~~~--~~~~~l~~-~~l~~~~~~~~i~~~~~~l~~~~~~~~g-~l~~~d~l~~~~~ 274 (368)
T 3h2y_A 211 ------------EESSLYDTPGIINHH--QMAHYVGK-QSLKLITPTKEIKPMVFQLNEEQTLFFS-GLARFDYVSGGRR 274 (368)
T ss_dssp ------------SSCEEEECCCBCCTT--SGGGGSCH-HHHHHHSCSSCCCCEEEEECTTEEEEET-TTEEEEEEESSSE
T ss_pred ------------CCeEEEeCCCcCcHH--HHHHHhhH-HHHHHhccccccCceEEEEcCCCEEEEc-ceEEEEEecCCCc
Confidence 258899999998753 12222221 122222 37889999999884210000 1112344555678
Q ss_pred eEEEEeccCCCcChHHHHHHHHHHHHhh
Q 008954 354 KIRVVLNKADQVDTQQLMRVYGALMWSL 381 (547)
Q Consensus 354 ~iivVlNK~D~~~~~~l~~~~~~l~~~l 381 (547)
|+++++||+|.+...++......+...+
T Consensus 275 ~~~~v~nk~d~~~~~~~~~~~~~~~~~~ 302 (368)
T 3h2y_A 275 AFTCHFSNRLTIHRTKLEKADELYKNHA 302 (368)
T ss_dssp EEEEEECTTSCEEEEEHHHHHHHHHHHB
T ss_pred eEEEEecCccccccccHHHHHHHHHHHh
Confidence 9999999999986654444444443333
No 214
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.06 E-value=5.7e-11 Score=113.65 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=95.4
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcccc----------CCceee
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTI----------PGNTIA 256 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~----------~g~~~~ 256 (547)
..+.+.++. .|..++|+|++|||||||++.|+|.. .|+.+.+.+ ++...... .....+
T Consensus 18 ~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~~~~i~~v 87 (224)
T 2pcj_A 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD--------APTEGKVFL--EGKEVDYTNEKELSLLRNRKLGFV 87 (224)
T ss_dssp EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS--------CCSEEEEEE--TTEECCSSCHHHHHHHHHHHEEEE
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCceEEEE--CCEECCCCCHHHHHHHHhCcEEEE
Confidence 356666655 89999999999999999999999987 345555443 23211110 234456
Q ss_pred ecCCCCCCCccccccchhhh-h------hhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 257 VHADLPFSGLTTFGGAFLSK-F------ECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 257 ~~~~~~~~~l~~~~~~~~~~-~------~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
++....+..++..++..+.. . ........+++.+.+-+ .|+-+|+ ++|++. ++++++.+++
T Consensus 88 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-------laral~~~p~ 160 (224)
T 2pcj_A 88 FQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVA-------IARALANEPI 160 (224)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHH-------HHHHTTTCCS
T ss_pred ecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH-------HHHHHHcCCC
Confidence 66655566666666543211 0 11112233444444322 3444554 666655 8999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEec
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLN 360 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlN 360 (547)
++|++ +.+.++.......++++.+.+.+..++++-+
T Consensus 161 lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 198 (224)
T 2pcj_A 161 LLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198 (224)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 99999 4455544445666777777655777777654
No 215
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.03 E-value=8.1e-11 Score=115.94 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=98.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc--------ccCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER--------TIPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~--------~~~g~~~~~~~ 259 (547)
++++.++. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ .|.+.. ....++.++|.
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~--------~p~~G~I~~--~G~~i~~~~~~~~~~~~~ig~v~Q~ 92 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL--------KPSSGRILF--DNKPIDYSRKGIMKLRESIGIVFQD 92 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS--------CCSEEEEEE--TTEECCCSHHHHHHHHHSEEEECSS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC--------CCCCeEEEE--CCEECCcccccHHHHhCcEEEEEcC
Confidence 56666665 89999999999999999999999987 344555443 332110 01234556654
Q ss_pred C-CCCCCccccccchhh-------hhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 260 D-LPFSGLTTFGGAFLS-------KFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 260 ~-~~~~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
. ..+...+..++.... ..+.......+++.+.+-+ .|+-+|+ ++|++. ++++++.+|+++
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~-------iAraL~~~P~lL 165 (275)
T 3gfo_A 93 PDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA-------IAGVLVMEPKVL 165 (275)
T ss_dssp GGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH-------HHHHHTTCCSEE
T ss_pred cccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH-------HHHHHHcCCCEE
Confidence 3 122244555544221 1111122233444444433 3455554 667655 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHh-CCCCeEEEEeccCCCc
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLR-GNDDKIRVVLNKADQV 365 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~-~~~~~iivVlNK~D~~ 365 (547)
|++ +.+.++.....+.++++.+. +.+..+++|-+..+.+
T Consensus 166 lLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred EEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 999 44444334456677787776 4578899998887765
No 216
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.02 E-value=1.5e-10 Score=111.86 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=96.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc-------cCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT-------IPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~-------~~g~~~~~~~~ 260 (547)
++++.++. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ +|..... ..+...+++..
T Consensus 21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~i~~v~q~~ 90 (240)
T 1ji0_A 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV--------RAQKGKIIF--NGQDITNKPAHVINRMGIALVPEGR 90 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEE--TTEECTTCCHHHHHHTTEEEECSSC
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEE--CCEECCCCCHHHHHhCCEEEEecCC
Confidence 56666655 89999999999999999999999987 345555443 2221111 12355566766
Q ss_pred CCCCCccccccchhhhh------hhhcccccccccce-EE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEE
Q 008954 261 LPFSGLTTFGGAFLSKF------ECSQMSHPLLDQVT-FV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILL 328 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~------~~~~~~~~ll~~l~-lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ill 328 (547)
..+.+++..++..+... ........+++.+. +- | .|+-+|+ ++|++. ++++++.+++++|+
T Consensus 91 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~-------lAraL~~~p~lllL 163 (240)
T 1ji0_A 91 RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLA-------IGRALMSRPKLLMM 163 (240)
T ss_dssp CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHH-------HHHHHTTCCSEEEE
T ss_pred ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEE
Confidence 66666666666533210 00111122333331 32 2 3555665 667655 89999999999999
Q ss_pred E--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 329 L--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 329 v--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+ +.+.++.......++++.+.+.+..++++-+.
T Consensus 164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd 198 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198 (240)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 9 44555444456667777776567778777654
No 217
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.02 E-value=2.2e-10 Score=116.55 Aligned_cols=155 Identities=19% Similarity=0.265 Sum_probs=99.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----cccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----RTIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----~~~~g~~~~~~~~~~~ 263 (547)
++.+.+++ .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ ++... .....+.+++|....|
T Consensus 30 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~--------~p~~G~I~i--~g~~i~~~~~~~r~ig~v~Q~~~l~ 99 (355)
T 1z47_A 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE--------RPTKGDVWI--GGKRVTDLPPQKRNVGLVFQNYALF 99 (355)
T ss_dssp CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS--------CCSEEEEEE--TTEECTTCCGGGSSEEEECGGGCCC
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCccEEEE--CCEECCcCChhhCcEEEEecCcccC
Confidence 56666655 89999999999999999999999988 345555443 22111 1123456677777777
Q ss_pred CCccccccchhh-h------hhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLS-K------FECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..+|.... + .+......++++.+.+-+ .|+-+|+ ++|++. ++++++.+++++|++
T Consensus 100 ~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRva-------lArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 100 QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVA-------LARALAPRPQVLLFDEP 172 (355)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH-------HHHHHTTCCSEEEEEST
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH-------HHHHHHcCCCEEEEeCC
Confidence 777777775321 1 111122334444444433 4556665 666655 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEecc
Q 008954 330 FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK 361 (547)
+.+.|.....++.++++.+.+ .+.++++|-+-
T Consensus 173 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 173 FAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp TCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 555554445566677776654 36777777553
No 218
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.02 E-value=9.8e-11 Score=114.74 Aligned_cols=155 Identities=19% Similarity=0.291 Sum_probs=97.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------------------
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER------------------- 248 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~------------------- 248 (547)
++.+.++. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ +|....
T Consensus 21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1b0u_A 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE--------KPSEGAIIV--NGQNINLVRDKDGQLKVADKNQLRL 90 (262)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS--------CCSEEEEEE--TTEECCEEECTTSSEEESCHHHHHH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCcEEEE--CCEEccccccccccccccChhhHHH
Confidence 56666554 89999999999999999999999987 344555443 221111
Q ss_pred ccCCceeeecCCCCCCCccccccchhhh--h------hhhcccccccccceEE----c-CCCCCCh-hhhhhhcccChHH
Q 008954 249 TIPGNTIAVHADLPFSGLTTFGGAFLSK--F------ECSQMSHPLLDQVTFV----D-TPGVLSG-EKQRTQRTYDFTG 314 (547)
Q Consensus 249 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~--~------~~~~~~~~ll~~l~lv----D-TPG~~~~-~~~~~~~~~~~~~ 314 (547)
.......+++....+..++..++..+.. . ........+++.+.+- | .|+-+|+ ++|++.
T Consensus 91 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~------- 163 (262)
T 1b0u_A 91 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS------- 163 (262)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH-------
T ss_pred HhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH-------
Confidence 0112445667666666666666653311 1 1111223344444442 3 3555665 666655
Q ss_pred HHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 315 VISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 315 ~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
++++++.+++++|++ +.+.++.....+.++++.+.+.+..++++-+-
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 212 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 899999999999999 55555444556677777776557777777553
No 219
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.01 E-value=2.8e-10 Score=126.98 Aligned_cols=136 Identities=18% Similarity=0.154 Sum_probs=82.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeee-cCCCCCCCccc-cccchhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAV-HADLPFSGLTT-FGGAFLSKF 277 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~-~~~~~~~~~ 277 (547)
..|+|+|+..+|||||..+|+-..-.....+... .+.+ +++........|+++.. -..+.|.+-.. .++
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~--~~~~-~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~------ 84 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVH--DGAA-TTDWMVQEQERGITITSAAVTTFWKGSRGQYDN------ 84 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC---------------------------CCEEEEEECCTTSCSCC------
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceec--CCCc-cCCChHHHHHcCCeEEeeeEEEEeccCcCCCCC------
Confidence 3599999999999999999983220000000000 0111 12222233445655511 11122221100 001
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRV 357 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iiv 357 (547)
..++|+||||+.+ |...+...+.-+|.+|+|+|+.. ++..+...+|+.+...+.|.++
T Consensus 85 ----------~~iNlIDTPGHvD-----------F~~Ev~~aLr~~DgavlvVDave-GV~~qT~~v~~~a~~~~lp~i~ 142 (709)
T 4fn5_A 85 ----------YRVNVIDTPGHVD-----------FTIEVERSLRVLDGAVVVFCGTS-GVEPQSETVWRQANKYGVPRIV 142 (709)
T ss_dssp ----------EEEEEECCCSCTT-----------CHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHHTCCEEE
T ss_pred ----------EEEEEEeCCCCcc-----------cHHHHHHHHHHhCeEEEEEECCC-CCchhHHHHHHHHHHcCCCeEE
Confidence 2699999999975 44556667899999999999998 8899999999999988999999
Q ss_pred EeccCCCcC
Q 008954 358 VLNKADQVD 366 (547)
Q Consensus 358 VlNK~D~~~ 366 (547)
++||+|...
T Consensus 143 ~iNKiDr~~ 151 (709)
T 4fn5_A 143 YVNKMDRQG 151 (709)
T ss_dssp EEECSSSTT
T ss_pred EEccccccC
Confidence 999999964
No 220
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.00 E-value=5.3e-10 Score=113.94 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=100.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----cccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----RTIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----~~~~g~~~~~~~~~~~ 263 (547)
++.+.+++ .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ ++... .......+++|....|
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~--------~p~~G~I~i--~g~~i~~~~~~~r~ig~v~Q~~~l~ 87 (359)
T 2yyz_A 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY--------KPTSGEIYF--DDVLVNDIPPKYREVGMVFQNYALY 87 (359)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS--------CCSEEEEEE--TTEECTTSCGGGTTEEEECSSCCCC
T ss_pred EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC--------CCCccEEEE--CCEECCCCChhhCcEEEEecCcccC
Confidence 55666555 89999999999999999999999988 355555443 22211 1123466677877777
Q ss_pred CCccccccchhh-h------hhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLS-K------FECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..+|.... + .+......++++.+.+-+ .|+-+|+ ++|++. ++++++.+++++|++
T Consensus 88 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRva-------lArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 88 PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVA-------LARALVKQPKVLLFDEP 160 (359)
T ss_dssp TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH-------HHHHHTTCCSEEEEEST
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEECC
Confidence 777777775321 1 111122334444444433 4566665 666655 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEecc
Q 008954 330 FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK 361 (547)
+.+.+.....+..+.++.+.+ .+.++++|-+-
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (359)
T 2yyz_A 161 LSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 555554445566677776643 36777777664
No 221
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.00 E-value=3e-10 Score=110.71 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=96.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-----ccCCceeeecCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-----TIPGNTIAVHADLP 262 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-----~~~g~~~~~~~~~~ 262 (547)
++.+.++. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ .+.... .......+++....
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~--------~p~~G~I~~--~g~~~~~~~~~~~~~i~~v~q~~~l 99 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI--------KPSSGIVTV--FGKNVVEEPHEVRKLISYLPEEAGA 99 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS--------CCSEEEEEE--TTEETTTCHHHHHTTEEEECTTCCC
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--------CCCceEEEE--CCEECCccHHHHhhcEEEEcCCCCC
Confidence 56665554 89999999999999999999999987 345555443 221110 11234556666655
Q ss_pred CCCccccccchhh-hhh------hhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE-
Q 008954 263 FSGLTTFGGAFLS-KFE------CSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL- 329 (547)
Q Consensus 263 ~~~l~~~~~~~~~-~~~------~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv- 329 (547)
+..++..++..+. ... .......+++.+.+- | .|+-+|+ ++|++. ++++++.+|+++|++
T Consensus 100 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~-------lAraL~~~p~lllLDE 172 (256)
T 1vpl_A 100 YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLL-------IARALMVNPRLAILDE 172 (256)
T ss_dssp CTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHH-------HHHHHTTCCSEEEEES
T ss_pred CCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEeC
Confidence 6666666665321 110 011122344444432 3 3455554 666655 899999999999999
Q ss_pred -ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 330 -FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 330 -~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+.+.++.....+.+++..+.+.+..++++-+-
T Consensus 173 Pts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 205 (256)
T 1vpl_A 173 PTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205 (256)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CccccCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 55555444556677777776557777777654
No 222
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.00 E-value=4.6e-10 Score=114.96 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=58.6
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhhhh
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKFEC 279 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (547)
..|+|+|.||+|||||+|+|++.. ..++..|.||.... .... ......+.....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~---~~v~~~p~~Ti~pn------------~g~~-----------~v~~~~l~~~~~ 55 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN---ALAANYPFATIDKN------------VGVV-----------PLEDERLYALQR 55 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH---TTCSSCCGGGGSTT------------EEEE-----------ECCCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CcccCCCCceeccc------------eeeE-----------ecChHHHHHHHH
Confidence 359999999999999999999986 55566555432100 0000 000000000000
Q ss_pred hccccc-----ccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCC
Q 008954 280 SQMSHP-----LLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHK 334 (547)
Q Consensus 280 ~~~~~~-----ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~ 334 (547)
...+.. .-..+.|+||||+..+... .+++. ......+..+|++++|+|+.+
T Consensus 56 ~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~--~~~lg--~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 56 TFAKGERVPPVVPTHVEFVDIAGLVKGAHK--GEGLG--NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp HHCBTTBCCCEECCEEEEEECCSCCCCCCS--SSCTT--HHHHHHHHTCSEEEEEEECCC
T ss_pred HhcccccccccCCceEEEEECCCccccccc--cchHH--HHHHHHHHhCCEEEEEEECCC
Confidence 000110 1136899999999865211 11221 122334789999999999874
No 223
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.99 E-value=3.3e-10 Score=110.33 Aligned_cols=148 Identities=19% Similarity=0.248 Sum_probs=88.6
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCcc
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLT 267 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~ 267 (547)
.+.+.++. .|.+++|+|++|||||||++.|+|.. .|+.+.+.. ......+++....+..++
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~p~~G~I~~---------~~~i~~v~q~~~~~~~~t 82 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH--------RPIQGKIEV---------YQSIGFVPQFFSSPFAYS 82 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS--------CCSEEEEEE---------CSCEEEECSCCCCSSCCB
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEE---------eccEEEEcCCCccCCCCC
Confidence 56666555 89999999999999999999999987 344444431 122334444443343444
Q ss_pred ccccchhhhh-----------hhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 268 TFGGAFLSKF-----------ECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 268 ~~~~~~~~~~-----------~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++...... ........+++.+.+-+ .|+-+|+ ++|++. ++++++.+++++|++
T Consensus 83 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-------lAraL~~~p~lllLDEP 155 (253)
T 2nq2_C 83 VLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLIL-------IARAIASECKLILLDEP 155 (253)
T ss_dssp HHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH-------HHHHHHTTCSEEEESSS
T ss_pred HHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEeCC
Confidence 4444322110 00111222333333322 2444554 666655 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhCC-CCeEEEEecc
Q 008954 330 FDPHKLDISDEFKRVIASLRGN-DDKIRVVLNK 361 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~~-~~~iivVlNK 361 (547)
+.+.++.......+++..+.+. +..++++-+.
T Consensus 156 ts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 156 TSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp STTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4455544445566777777654 6777777654
No 224
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.98 E-value=1.3e-10 Score=113.77 Aligned_cols=155 Identities=19% Similarity=0.286 Sum_probs=95.8
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----c----cCCceeeecC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----T----IPGNTIAVHA 259 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~----~~g~~~~~~~ 259 (547)
.+++.+|+ .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ +|.... . ......+++.
T Consensus 39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~--------~p~~G~I~~--~g~~i~~~~~~~~~~~~~i~~v~Q~ 108 (263)
T 2olj_A 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE--------DFDEGEIII--DGINLKAKDTNLNKVREEVGMVFQR 108 (263)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS--------CCSEEEEEE--TTEESSSTTCCHHHHHHHEEEECSS
T ss_pred EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC--------CCCCcEEEE--CCEECCCccccHHHHhCcEEEEeCC
Confidence 55665554 89999999999999999999999987 344555443 222110 0 1123446666
Q ss_pred CCCCCCccccccchhhh--h------hhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 260 DLPFSGLTTFGGAFLSK--F------ECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 260 ~~~~~~l~~~~~~~~~~--~------~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
...+..++..++..... . ........+++.+.+-+ .|+-+|+ ++|++. ++++++.+++++
T Consensus 109 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~-------lAraL~~~p~ll 181 (263)
T 2olj_A 109 FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVA-------IARALAMEPKIM 181 (263)
T ss_dssp CCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH-------HHHHHTTCCSEE
T ss_pred CcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH-------HHHHHHCCCCEE
Confidence 55566666666653211 0 11112233444444432 3445554 666655 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
|++ +.+.|+.....+.++++.+.+.+..++++-+.
T Consensus 182 lLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 218 (263)
T 2olj_A 182 LFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218 (263)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 999 55555444556677777776557777777553
No 225
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.98 E-value=5.3e-10 Score=114.10 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=101.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----cccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----RTIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----~~~~g~~~~~~~~~~~ 263 (547)
++.+.++. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ ++... ....++.+++|....|
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~--------~p~~G~I~i--~g~~i~~~~~~~r~ig~v~Q~~~l~ 87 (362)
T 2it1_A 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY--------KPTSGKIYF--DEKDVTELPPKDRNVGLVFQNWALY 87 (362)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS--------CCSEEEEEE--TTEECTTSCGGGTTEEEECTTCCCC
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC--------CCCceEEEE--CCEECCcCCHhHCcEEEEecCcccC
Confidence 56666555 89999999999999999999999988 345555443 22211 1123566677877777
Q ss_pred CCccccccchhh-h------hhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLS-K------FECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..+|.... + .+......++++.+.+-+ .|+-+|+ ++|++. ++++++.+++++|++
T Consensus 88 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva-------lArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 88 PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVA-------IARALVKEPEVLLLDEP 160 (362)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHH-------HHHHHTTCCSEEEEESG
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEECc
Confidence 778877776321 1 111122233444444432 3555665 666655 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEecc
Q 008954 330 FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK 361 (547)
+.+.+.....+..+.++.+.+ .+.++++|-+-
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (362)
T 2it1_A 161 LSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193 (362)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 556554455666777777653 37788887664
No 226
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.98 E-value=5.9e-10 Score=113.61 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=101.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCC---------ccccCCceeeec
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPD---------ERTIPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~---------~~~~~g~~~~~~ 258 (547)
++.+.+++ .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ ++.. .....+..+++|
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~--------~p~~G~I~i--~g~~i~~~~~~~~~~~~r~ig~v~Q 89 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD--------VPSTGELYF--DDRLVASNGKLIVPPEDRKIGMVFQ 89 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS--------CCSEEEEEE--TTEEEEETTEESSCGGGSCEEEEET
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEE--CCEECcccccccCChhhCCEEEEeC
Confidence 45565554 89999999999999999999999988 344444433 1111 111234566778
Q ss_pred CCCCCCCccccccchhh-h------hhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeE
Q 008954 259 ADLPFSGLTTFGGAFLS-K------FECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLI 326 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~-~------~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~i 326 (547)
....|..++..+|.... + .+......++++.+.+-+ .|+-+|+ ++|++. ++++++.+++++
T Consensus 90 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRva-------lAraL~~~P~lL 162 (353)
T 1oxx_K 90 TWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA-------LARALVKDPSLL 162 (353)
T ss_dssp TSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH-------HHHHHTTCCSEE
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHHHHhCCCEE
Confidence 77777777777775321 1 111122334444444433 4566665 666655 899999999999
Q ss_pred EEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEecc
Q 008954 327 LLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 327 llv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK 361 (547)
|++ +.+.+.....+..++++.+.+ .+.++++|-+-
T Consensus 163 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 200 (353)
T 1oxx_K 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200 (353)
T ss_dssp EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 999 666665566777788877754 47788887664
No 227
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.97 E-value=6.6e-10 Score=113.79 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=95.6
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----ccCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----TIPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----~~~g~~~~~~~~~~~ 263 (547)
++.+.+++ .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ ++.... ......+++|....|
T Consensus 26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~--------~p~~G~I~i--~g~~i~~~~~~~r~ig~v~Q~~~l~ 95 (372)
T 1v43_A 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE--------EPTEGRIYF--GDRDVTYLPPKDRNISMVFQSYAVW 95 (372)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS--------CCSEEEEEE--TTEECTTSCGGGGTEEEEEC-----
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC--------CCCceEEEE--CCEECCCCChhhCcEEEEecCcccC
Confidence 55666555 89999999999999999999999988 355555443 222111 123456677777677
Q ss_pred CCccccccchhh-------hhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 264 SGLTTFGGAFLS-------KFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~-------~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
..++..+|.... +.+......++++.+.+-+ .|+-+|+ ++|++. ++++++.+++++|++
T Consensus 96 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva-------lArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 96 PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVA-------VARAIVVEPDVLLMDEP 168 (372)
T ss_dssp -CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHH-------HHHHHTTCCSEEEEEST
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEcCC
Confidence 777777765321 1111122334444444433 4666665 667655 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEecc
Q 008954 330 FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK 361 (547)
+.+.+.....++.+.++.+.+ .+.++++|-+-
T Consensus 169 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 201 (372)
T 1v43_A 169 LSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 555554445566677777654 37788877664
No 228
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.97 E-value=8.2e-09 Score=103.27 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=47.0
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHH---HHHHHHh--CCCCeEEEEeccCC
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFK---RVIASLR--GNDDKIRVVLNKAD 363 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~---~ll~~l~--~~~~~iivVlNK~D 363 (547)
.+.++||||...-. .. .+ ....+...++++|+|+|.++. ..+... +++..+. ..+.|+++|.||+|
T Consensus 47 ~LqIWDTAGQErf~-----~~-~l--~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~D 117 (331)
T 3r7w_B 47 DLAVMELPGQLNYF-----EP-SY--DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117 (331)
T ss_dssp CEEEEECCSCSSSC-----CC-SH--HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCC
T ss_pred EEEEEECCCchhcc-----ch-hh--hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcc
Confidence 78999999986410 00 00 234557899999999999874 333222 2233332 24689999999999
Q ss_pred CcChH
Q 008954 364 QVDTQ 368 (547)
Q Consensus 364 ~~~~~ 368 (547)
+.+.+
T Consensus 118 L~~~~ 122 (331)
T 3r7w_B 118 GLSED 122 (331)
T ss_dssp SSCSH
T ss_pred cCchh
Confidence 98754
No 229
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.96 E-value=2.3e-10 Score=117.32 Aligned_cols=155 Identities=15% Similarity=0.222 Sum_probs=100.2
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCC----------ccccCCceeee
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPD----------ERTIPGNTIAV 257 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~----------~~~~~g~~~~~ 257 (547)
++.+.++. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ ++.. ......+.+++
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~--------~p~~G~I~i--~g~~~~~~~~~~~~~~~~r~ig~v~ 87 (372)
T 1g29_1 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE--------EPSRGQIYI--GDKLVADPEKGIFVPPKDRDIAMVF 87 (372)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS--------CCSEEEEEE--TTEEEEEGGGTEECCGGGSSEEEEC
T ss_pred EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC--------CCCccEEEE--CCEECccccccccCCHhHCCEEEEe
Confidence 56666655 89999999999999999999999998 344444433 1111 01123566677
Q ss_pred cCCCCCCCccccccchhh-hh------hhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCe
Q 008954 258 HADLPFSGLTTFGGAFLS-KF------ECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDL 325 (547)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~-~~------~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~ 325 (547)
|....|..++..+|.... +. +......++++.+.+-+ .|+-+|+ ++|++. ++++++.++++
T Consensus 88 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva-------lArAL~~~P~l 160 (372)
T 1g29_1 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVA-------LGRAIVRKPQV 160 (372)
T ss_dssp SCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHH-------HHHHHHTCCSE
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHH-------HHHHHhcCCCE
Confidence 877777777777776321 11 11122334444444433 4556665 666655 89999999999
Q ss_pred EEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEecc
Q 008954 326 ILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 326 illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK 361 (547)
+|++ +.+.+.....+..++++.+.+ .+.++++|-+-
T Consensus 161 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 199 (372)
T 1g29_1 161 FLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199 (372)
T ss_dssp EEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred EEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 9999 555554445566677776654 37788887664
No 230
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.96 E-value=2e-10 Score=116.71 Aligned_cols=155 Identities=15% Similarity=0.229 Sum_probs=99.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc----cCCceeeecCCCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT----IPGNTIAVHADLPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~----~~g~~~~~~~~~~~ 263 (547)
++.+.+++ .|..++|+|++|||||||++.|+|.. .|+.+.+.+ ++..... ..+..+++|....|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~--------~p~~G~I~~--~g~~i~~~~~~~r~ig~v~Q~~~l~ 84 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH--------VPDSGRILL--DGKDVTDLSPEKHDIAFVYQNYSLF 84 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS--------CCSEEEEEE--TTEECTTSCHHHHTCEEECTTCCCC
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC--------CCCCcEEEE--CCEECCCCchhhCcEEEEecCcccC
Confidence 45565554 89999999999999999999999988 355555443 2221111 23466677877777
Q ss_pred CCccccccchhh-hhhh---hcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecC
Q 008954 264 SGLTTFGGAFLS-KFEC---SQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDP 332 (547)
Q Consensus 264 ~~l~~~~~~~~~-~~~~---~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~ 332 (547)
..++..+|.... +... .....++++.+.+-+ .|+-+|+ ++|++. ++++++.+++++|++ +.+
T Consensus 85 ~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRva-------lAraL~~~P~lLLLDEP~s~ 157 (348)
T 3d31_A 85 PHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVA-------LARALVTNPKILLLDEPLSA 157 (348)
T ss_dssp TTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHH-------HHHHTTSCCSEEEEESSSTT
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEECcccc
Confidence 788877776322 1100 012223344443322 3555555 666654 899999999999999 555
Q ss_pred CCCCCCHHHHHHHHHHhC-CCCeEEEEecc
Q 008954 333 HKLDISDEFKRVIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 333 ~~~~~~~~~~~ll~~l~~-~~~~iivVlNK 361 (547)
.+.....++.++++.+.+ .+.++++|-+-
T Consensus 158 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 158 LDPRTQENAREMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 554445566777777753 47788777664
No 231
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.95 E-value=4e-10 Score=109.60 Aligned_cols=160 Identities=17% Similarity=0.169 Sum_probs=94.5
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCC-CCCCCCCCCcccceeEEEEeCCCccc-------cCCceeeec
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCN-YPGAHIGPEPTTDRFVVVMSGPDERT-------IPGNTIAVH 258 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~-~~~~~v~~~~~T~~~~~i~~~~~~~~-------~~g~~~~~~ 258 (547)
.++++.++. .|.+++|+|++|+|||||++.|+|.. . .|+.+.+.+ +|..... ..+...+++
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~-------~p~~G~I~~--~g~~~~~~~~~~~~~~~i~~v~q 87 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEY-------TVERGEILL--DGENILELSPDERARKGLFLAFQ 87 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTC-------EEEEEEEEE--TTEECTTSCHHHHHHTTBCCCCC
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-------CCCceEEEE--CCEECCCCCHHHHHhCcEEEecc
Confidence 356666655 89999999999999999999999972 1 345555443 2321111 123344556
Q ss_pred CCCCCCCccccccchhhh--hh--------hhcccccccccceE----Ec-CCCC-CC-hhhhhhhcccChHHHHHHHhh
Q 008954 259 ADLPFSGLTTFGGAFLSK--FE--------CSQMSHPLLDQVTF----VD-TPGV-LS-GEKQRTQRTYDFTGVISWFAA 321 (547)
Q Consensus 259 ~~~~~~~l~~~~~~~~~~--~~--------~~~~~~~ll~~l~l----vD-TPG~-~~-~~~~~~~~~~~~~~~~~~~~~ 321 (547)
....+.+++...+..... .. .......+++.+.+ .| .|+- +| |++|++. ++++++.
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~-------iAraL~~ 160 (250)
T 2d2e_A 88 YPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNE-------ILQLLVL 160 (250)
T ss_dssp CCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHH-------HHHHHHH
T ss_pred CCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH-------HHHHHHc
Confidence 555555555555442111 00 01112233333333 34 3454 55 4777765 8999999
Q ss_pred cCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCC
Q 008954 322 KCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 322 ~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~ 364 (547)
+++++|++ +.+.++.....+.++++.+.+.+..++++-+..+.
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI 205 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 99999999 55555444556677777776667778777765443
No 232
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.95 E-value=1.1e-09 Score=109.52 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=40.2
Q ss_pred CCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChHHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCC
Q 008954 323 CDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKP 402 (547)
Q Consensus 323 aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~ 402 (547)
+++++++.++...++.....++++.+.. ..++++|+||+|+.+..++......+... .+..+ +..+.+||+++ +
T Consensus 127 a~~ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV~~K~Dl~~~~e~~~~~~~~~~~-~~~~~---~~~~e~Sa~~~-~ 200 (301)
T 2qnr_A 127 VHCCFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPVIAKADTLTLKERERLKKRILDE-IEEHN---IKIYHLPDAES-D 200 (301)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEEECCGGGSCHHHHHHHHHHHHHH-HHHTT---CCCCCCC------
T ss_pred hhheeeeecCcccCCCHHHHHHHHHHHh-cCCEEEEEEeCCCCCHHHHHHHHHHHHHH-HHHcC---CeEEecCCccc-c
Confidence 4556776665432355555677777754 57899999999998876543322222111 12222 23367899988 7
Q ss_pred CCC
Q 008954 403 ING 405 (547)
Q Consensus 403 l~~ 405 (547)
+++
T Consensus 201 v~e 203 (301)
T 2qnr_A 201 EDE 203 (301)
T ss_dssp ---
T ss_pred ccH
Confidence 765
No 233
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.93 E-value=4.1e-10 Score=110.49 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=90.5
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcccc------CCceeeecCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTI------PGNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~------~g~~~~~~~~ 260 (547)
.++++.+++ .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ +|.+.... ......++..
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--------~p~~G~I~~--~g~~~~~~~~~~~~~~i~~v~q~~ 94 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL--------SPSHGECHL--LGQNLNSWQPKALARTRAVMRQYS 94 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS--------CCSSCEEEE--TTEETTTSCHHHHHHHEEEECSCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--------CCCCcEEEE--CCEECCcCCHHHHhheEEEEecCC
Confidence 356666665 89999999999999999999999987 344454443 23221111 1123344443
Q ss_pred CCCCCccccccchhhhh-----hhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhh------cCC
Q 008954 261 LPFSGLTTFGGAFLSKF-----ECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAA------KCD 324 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~-----~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~------~aD 324 (547)
..+..++..++...... ........+++.+.+.+ .|+-+|+ ++|++. ++++++. +++
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~-------iAraL~~~~~~~~~p~ 167 (266)
T 4g1u_C 95 ELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQ-------LARVLAQLWQPQPTPR 167 (266)
T ss_dssp CCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHH-------HHHHHHHTCCSSCCCE
T ss_pred ccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH-------HHHHHhcccccCCCCC
Confidence 33334444444322110 01111223333343332 2444554 677665 8999999 999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCC-CeEEEEecc
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGND-DKIRVVLNK 361 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~-~~iivVlNK 361 (547)
++|++ +.+.++....++.++++.+.+.+ ..+++|.+.
T Consensus 168 lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 168 WLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 99999 55555444456677777776543 466666554
No 234
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.93 E-value=1.1e-09 Score=105.77 Aligned_cols=153 Identities=20% Similarity=0.271 Sum_probs=92.7
Q ss_pred cCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----cccCCceeeecCCCCCC
Q 008954 191 LTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----RTIPGNTIAVHADLPFS 264 (547)
Q Consensus 191 ~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----~~~~g~~~~~~~~~~~~ 264 (547)
+.+.+++ . ..++|+|++|||||||++.|+|.. .|+.+.+.+ +|... ........+++....+.
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~i~~v~q~~~l~~ 83 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV--------KPDRGEVRL--NGADITPLPPERRGIGFVPQDYALFP 83 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS--------CCSEEEEEE--TTEECTTSCTTTSCCBCCCSSCCCCT
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEE--CCEECCcCchhhCcEEEEcCCCccCC
Confidence 4555544 7 899999999999999999999987 344555443 22111 11223455666655566
Q ss_pred Cccccccchhh-hh----hhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecC
Q 008954 265 GLTTFGGAFLS-KF----ECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDP 332 (547)
Q Consensus 265 ~l~~~~~~~~~-~~----~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~ 332 (547)
.++..++.... .. ........+++.+.+-+ .|+-+|+ ++|++. ++++++.+++++|++ +.+
T Consensus 84 ~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~-------lAral~~~p~lllLDEPts~ 156 (240)
T 2onk_A 84 HLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVA-------LARALVIQPRLLLLDEPLSA 156 (240)
T ss_dssp TSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHH-------HHHHHTTCCSSBEEESTTSS
T ss_pred CCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEeCCccc
Confidence 66665554221 00 00112233444444432 3455554 666654 899999999999999 455
Q ss_pred CCCCCCHHHHHHHHHHhC-CCCeEEEEecc
Q 008954 333 HKLDISDEFKRVIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 333 ~~~~~~~~~~~ll~~l~~-~~~~iivVlNK 361 (547)
.++.......+++..+.+ .+..++++-+-
T Consensus 157 LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd 186 (240)
T 2onk_A 157 VDLKTKGVLMEELRFVQREFDVPILHVTHD 186 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 554444556677777654 36778887664
No 235
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=98.91 E-value=6.1e-09 Score=82.91 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 8 ITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 8 ~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
...+++++.+.++.+|..+|.+++|+|+.+++..+++.. .++..++..++..+|.+++|.|+++||+.++.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 77 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIML 77 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHHSSSSCSEEEHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 457899999999999999999999999999999999984 46889999999999999999999999998774
No 236
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.90 E-value=2e-09 Score=104.20 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=89.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc------cccCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE------RTIPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~------~~~~g~~~~~~~~~ 261 (547)
.+.+.++. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ ++... ........+++...
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g~~~~~~~~~~~~~~i~~v~q~~~ 86 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY--------QPTAGEITI--DGQPIDNISLENWRSQIGFVSQDSA 86 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS--------CCSBSCEEE--TTEESTTTSCSCCTTTCCEECCSSC
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCcEEEE--CCEEhhhCCHHHHHhhEEEEcCCCc
Confidence 56665554 89999999999999999999999987 344555443 22110 01123444555544
Q ss_pred CCCCccccccchhh-h--h---hhhc-----ccccccccc-----eEEc-CCCCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 262 PFSGLTTFGGAFLS-K--F---ECSQ-----MSHPLLDQV-----TFVD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 262 ~~~~l~~~~~~~~~-~--~---~~~~-----~~~~ll~~l-----~lvD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
.+. .+..++..+. . . .... -..+++..+ ..++ .++-+|+ ++|++. ++++++.++
T Consensus 87 l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~-------lAral~~~p 158 (243)
T 1mv5_A 87 IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA-------IARAFLRNP 158 (243)
T ss_dssp CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH-------HHHHHHHCC
T ss_pred ccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHH-------HHHHHhcCC
Confidence 443 2444443211 0 0 0000 001111110 1222 2344554 667655 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEec
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLN 360 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlN 360 (547)
+++|++ +.+.++.....+.+++..+. .+..++++-+
T Consensus 159 ~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH 196 (243)
T 1mv5_A 159 KILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAH 196 (243)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECC
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeC
Confidence 999999 55666666677888888887 4677777655
No 237
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.89 E-value=5.7e-10 Score=108.30 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=90.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~~ 261 (547)
.+.+.++. .|..++|+|++|||||||++.|+|.. .|+ +.+.+ ++..... ......+++...
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~--------~p~-G~i~~--~g~~~~~~~~~~~~~~i~~v~q~~~ 83 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--------SGK-GSIQF--AGQPLEAWSATKLALHRAYLSQQQT 83 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS--------CCE-EEEEE--TTEEGGGSCHHHHHHHEEEECSCCC
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--------CCC-eEEEE--CCEECCcCCHHHHhceEEEECCCCc
Confidence 45555544 89999999999999999999999987 344 44333 2321111 112344555554
Q ss_pred CCCCccccccchhhhhh--hhcccccccccceEE---c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCC-------eEE
Q 008954 262 PFSGLTTFGGAFLSKFE--CSQMSHPLLDQVTFV---D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCD-------LIL 327 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~~--~~~~~~~ll~~l~lv---D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD-------~il 327 (547)
.+.+++..++..+.... .......+++.+.+- | .|+-+|+ ++|++. ++++++.+++ ++|
T Consensus 84 ~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-------lAraL~~~p~~~~~~~~lll 156 (249)
T 2qi9_C 84 PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVR-------LAAVVLQITPQANPAGQLLL 156 (249)
T ss_dssp CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHH-------HHHHHHHHCTTTCTTCCEEE
T ss_pred cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHHHHcCCCcCCCCCeEEE
Confidence 45555555554221100 011112233333332 2 2444554 666655 8999999999 999
Q ss_pred EE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 328 LL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 328 lv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
++ +.+.++.....+.++++.+.+.+..++++-+.
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 192 (249)
T 2qi9_C 157 LDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192 (249)
T ss_dssp ESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 98 44554444456667777776556777776553
No 238
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.89 E-value=1.1e-07 Score=98.61 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=71.8
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhhh
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSKF 277 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (547)
.+..|+|+|+||||||||+|+|+|... +.+.....+.... ... ...++.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~--------t~~--~~v~q~------------------ 116 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEV--------TME--RHPYKH------------------ 116 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC------------CC--CEEEEC------------------
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeec--------cee--EEeccc------------------
Confidence 346899999999999999999999763 2221111111000 000 111111
Q ss_pred hhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHH-HhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 278 ECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISW-FAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 278 ~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~-~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
+...+++++|+||+... +.++. +.... -+...+.+++ +++.. ...+...+.+.+...+.|++
T Consensus 117 -------~~~~~ltv~D~~g~~~~-~~~~~------~~L~~~~L~~~~~~~~-lS~G~--~~kqrv~la~aL~~~~~p~~ 179 (413)
T 1tq4_A 117 -------PNIPNVVFWDLPGIGST-NFPPD------TYLEKMKFYEYDFFII-ISATR--FKKNDIDIAKAISMMKKEFY 179 (413)
T ss_dssp -------SSCTTEEEEECCCGGGS-SCCHH------HHHHHTTGGGCSEEEE-EESSC--CCHHHHHHHHHHHHTTCEEE
T ss_pred -------cccCCeeehHhhcccch-HHHHH------HHHHHcCCCccCCeEE-eCCCC--ccHHHHHHHHHHHhcCCCeE
Confidence 01137899999998632 11121 11111 1455566665 66643 35666778888888889999
Q ss_pred EEeccCCCc
Q 008954 357 VVLNKADQV 365 (547)
Q Consensus 357 vVlNK~D~~ 365 (547)
+|+||.|.+
T Consensus 180 lV~tkpdll 188 (413)
T 1tq4_A 180 FVRTKVDSD 188 (413)
T ss_dssp EEECCHHHH
T ss_pred EEEecCccc
Confidence 999999976
No 239
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.89 E-value=9.3e-10 Score=108.02 Aligned_cols=159 Identities=18% Similarity=0.236 Sum_probs=93.9
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc---ccCCceeeecCC-CCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER---TIPGNTIAVHAD-LPF 263 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~---~~~g~~~~~~~~-~~~ 263 (547)
++.+.++. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ ++.... .......+++.. ..+
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~--------~p~~G~I~~--~g~~~~~~~~~~~i~~v~q~~~~~~ 91 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI--------EPTSGDVLY--DGERKKGYEIRRNIGIAFQYPEDQF 91 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEE--TTEECCHHHHGGGEEEECSSGGGGC
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCCcEEEE--CCEECchHHhhhhEEEEeccchhhc
Confidence 45555544 89999999999999999999999987 344454443 221110 012234445542 223
Q ss_pred CCccccccchhhh-h--h---hhcccccccccceEE-----c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE-
Q 008954 264 SGLTTFGGAFLSK-F--E---CSQMSHPLLDQVTFV-----D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL- 329 (547)
Q Consensus 264 ~~l~~~~~~~~~~-~--~---~~~~~~~ll~~l~lv-----D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv- 329 (547)
..++..++..... . . .......+++.+.+- | .|+-+|+ ++|++. ++++++.+++++|++
T Consensus 92 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~-------lAraL~~~p~lllLDE 164 (266)
T 2yz2_A 92 FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVA-------IASVIVHEPDILILDE 164 (266)
T ss_dssp CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHH-------HHHHHTTCCSEEEEES
T ss_pred CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEcC
Confidence 3344444432210 0 0 001122334444443 2 3455554 666655 899999999999999
Q ss_pred -ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCc
Q 008954 330 -FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQV 365 (547)
Q Consensus 330 -~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~ 365 (547)
+.+.++.......++++.+.+.+..++++-+..+.+
T Consensus 165 Pts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 545554445566777777765577888887766654
No 240
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=98.88 E-value=4.4e-09 Score=87.00 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhhC-CCCC-CcccHHHHHHHHhh-------CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHh
Q 008954 14 EHQKIYREWFDIAD-SDGD-GRITGNDATKFLGL-------SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQ 84 (547)
Q Consensus 14 ee~~~~~~~F~~~D-~~~~-G~Is~~e~~~~l~~-------~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q 84 (547)
.....+.++|..|| .|++ |+||.+|++.+++. ..++.+++.++++.+|.|+||.|+|+||+.++.-+..++
T Consensus 7 ~~i~~l~~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~~~~~~ 86 (101)
T 3nso_A 7 QAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYC 86 (101)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 45789999999997 8987 99999999999986 245789999999999999999999999999998888887
Q ss_pred cC
Q 008954 85 AG 86 (547)
Q Consensus 85 ~g 86 (547)
|.
T Consensus 87 ~~ 88 (101)
T 3nso_A 87 HE 88 (101)
T ss_dssp CG
T ss_pred HH
Confidence 74
No 241
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.87 E-value=7e-10 Score=117.90 Aligned_cols=194 Identities=14% Similarity=0.139 Sum_probs=98.3
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeE-EEEeccCCCcC
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKI-RVVLNKADQVD 366 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~i-ivVlNK~D~~~ 366 (547)
..+.||||||........... ...+.. +..+|.+++|+|+.. +.. ..+.++.+.+. .|+ .+|+||+|...
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~e---l~~~~~--~i~pd~vllVvDa~~-g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEE---MLQVAN--AIQPDNIVYVMDASI-GQA--CEAQAKAFKDK-VDVASVIVTKLDGHA 254 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHH---HHHHHH--HHCCSEEEEEEETTC-CTT--HHHHHHHHHHH-HCCCCEEEECTTSCC
T ss_pred CcEEEEeCCCCcccchhHHHH---HHHHHh--hhcCceEEEEEeccc-ccc--HHHHHHHHHhh-cCceEEEEeCCcccc
Confidence 368999999998632111110 111112 238999999999976 332 34444444432 564 89999999875
Q ss_pred hHH-HHHHHHHHHHhh-----hh----ccCCCCcEEEEecccCCCC-CCCC----CCCC------cchHhhHHH--HHHH
Q 008954 367 TQQ-LMRVYGALMWSL-----GK----VLNTPEVVRVYIGSFNDKP-INGE----VVGP------IGQELFEKE--QDDL 423 (547)
Q Consensus 367 ~~~-l~~~~~~l~~~l-----~~----~~~~~~v~~v~isa~~~~~-l~~~----~~~~------~~~~~~~~~--~e~l 423 (547)
... .......+-..+ ++ +..+.. .+++|+..|.+ +... ...+ ..+.++..+ .+++
T Consensus 255 ~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~--~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~~g~~~l~d~ 332 (504)
T 2j37_W 255 KGGGALSAVAATKSPIIFIGTGEHIDDFEPFKT--QPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDM 332 (504)
T ss_dssp CCTHHHHHHHHHCCCEEEEECSSSTTCEECCTH--HHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCTTSGGGGCCC
T ss_pred chHHHHHHHHHhCCCeEEeccccchhhhhccCc--ceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 321 111111110000 11 111111 24678888887 6541 0010 011111111 2345
Q ss_pred HHHHhhc------------hhhHHH--HHHHHH-HHHHHHHHHHHHHH----HHHHhhc-ccccccHHHHHHHHHH----
Q 008954 424 LMDLIDI------------PKKACD--RQINEF-VKRARAAKIHAYII----SHLKKEM-PTMMGKAKAQQRLIDN---- 479 (547)
Q Consensus 424 ~~~l~~~------------~~~~~~--~~i~~~-~~~~~~~~i~a~i~----~~~~~~~-~~~~gk~~~~~~~i~~---- 479 (547)
+..+++. .|+... .....+ ....+..++.|.|. .++..++ |.+||+++..++.|..
T Consensus 333 ~~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~~sr~~ria~gsg~ 412 (504)
T 2j37_W 333 YEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGV 412 (504)
T ss_dssp HHHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHCTHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCChHHHHHHHHhcCC
Confidence 5555441 222211 000111 12344667888887 7888887 8999877665555543
Q ss_pred -------HHHHHHHHHHHhC
Q 008954 480 -------LEDEFAKVQREFH 492 (547)
Q Consensus 480 -------l~~~~~~v~~~~~ 492 (547)
|.+-|...+.-..
T Consensus 413 ~~~~v~~ll~~~~~~~~~~~ 432 (504)
T 2j37_W 413 STRDVQELLTQYTKFAQMVK 432 (504)
T ss_dssp CHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 5566666665443
No 242
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=98.86 E-value=3.8e-09 Score=85.65 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..+++++.+.++.+|..+|.|++|+|+.+|+..+++..+++..++..++..+|.+++|.|+++||+.++.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~ 88 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFL 88 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEECHHHHTHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 4567888999999999999999999999999999999889999999999999999999999999998764
No 243
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=98.86 E-value=9e-09 Score=82.15 Aligned_cols=70 Identities=20% Similarity=0.344 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCC-CCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSK-LSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~-l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..+++++.+.++.+|..+|.|++|+|+.+++..+++..+ ++..++..++..+|.+++|.|+++||..++.
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 73 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFAR 73 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 368999999999999999999999999999999999864 7788999999999999999999999998764
No 244
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=98.86 E-value=6.4e-09 Score=81.05 Aligned_cols=68 Identities=19% Similarity=0.376 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 11 CSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 11 ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+|+++.+.++.+|..+|.+++|+|+.+++..+++.. .++..++..++..+|.+++|.|+++||+.++.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 70 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMT 70 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHCCSSSSEEEHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999999999999999984 46788899999999999999999999998764
No 245
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=98.85 E-value=1.1e-08 Score=84.23 Aligned_cols=74 Identities=15% Similarity=0.320 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHhh-------CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIAD-SDGDG-RITGNDATKFLGL-------SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLA 83 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~~-------~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~ 83 (547)
++....++++|..|| .|++| +||.+|++.+++. ..++..++.++++.+|.|+||.|+|+||+.++.-+..+
T Consensus 7 e~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~~~ 86 (98)
T 3n22_A 7 EQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLALITVM 86 (98)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 345789999999997 89995 9999999999985 24578999999999999999999999999999877777
Q ss_pred hcC
Q 008954 84 QAG 86 (547)
Q Consensus 84 q~g 86 (547)
+|.
T Consensus 87 ~~~ 89 (98)
T 3n22_A 87 SND 89 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 246
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.85 E-value=1.3e-08 Score=99.23 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=43.1
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHH----HHHhCCCCeEEEEeccCCC
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVI----ASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll----~~l~~~~~~iivVlNK~D~ 364 (547)
.+.|+||||..+.... . .. ...+.. .+.+ +++++++|+............. ......+.|+++|+||+|+
T Consensus 110 d~iiiDtpG~~~~~~~--~-~l-~~~~~~-~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLF--H-EF-GVRLME-NLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL 183 (262)
T ss_dssp SEEEEECCSSHHHHHH--S-HH-HHHHHH-TSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGG
T ss_pred CEEEEeCCCccchhhh--h-hh-HHHHHH-HHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccc
Confidence 7899999998653211 0 00 001122 2356 8999999986522222222221 1222336899999999999
Q ss_pred cChHH
Q 008954 365 VDTQQ 369 (547)
Q Consensus 365 ~~~~~ 369 (547)
....+
T Consensus 184 ~~~~~ 188 (262)
T 1yrb_A 184 LSEEE 188 (262)
T ss_dssp CCHHH
T ss_pred ccccc
Confidence 87643
No 247
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.85 E-value=3.4e-10 Score=111.81 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=92.9
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc--c------cCCceeeec
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER--T------IPGNTIAVH 258 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~--~------~~g~~~~~~ 258 (547)
.++.+.+|. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ .+.... . ......+++
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~--------~p~~G~I~~--~g~~~~~~~~~~~~~~~~i~~v~Q 104 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE--------PATSGTVNL--FGKMPGKVGYSAETVRQHIGFVSH 104 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS--------CCSEEEEEE--TTBCCC---CCHHHHHTTEEEECH
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCCeEEEE--CCEEcccccCCHHHHcCcEEEEEc
Confidence 356666665 89999999999999999999999987 344444433 222111 0 123344444
Q ss_pred CCC-CC-CCccccccchhhh-----------hhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHh
Q 008954 259 ADL-PF-SGLTTFGGAFLSK-----------FECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFA 320 (547)
Q Consensus 259 ~~~-~~-~~l~~~~~~~~~~-----------~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~ 320 (547)
... .+ ..++..++..... .........+++.+.+-+ .|+-+|+ ++|++. ++++++
T Consensus 105 ~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~-------lAraL~ 177 (279)
T 2ihy_A 105 SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM-------IARALM 177 (279)
T ss_dssp HHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH-------HHHHHH
T ss_pred CcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-------HHHHHh
Confidence 321 12 1234434332110 000111223333343322 3444554 666655 899999
Q ss_pred hcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeE--EEEeccCCCc
Q 008954 321 AKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKI--RVVLNKADQV 365 (547)
Q Consensus 321 ~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~i--ivVlNK~D~~ 365 (547)
.+++++|++ +.+.++.....+.++++.+.+.+..+ ++|-+..+.+
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEI 226 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGC
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHH
Confidence 999999999 55555444455667777775547778 8887766543
No 248
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.85 E-value=3.1e-09 Score=104.31 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=92.0
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc-------cCCceeeecCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT-------IPGNTIAVHAD 260 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~-------~~g~~~~~~~~ 260 (547)
++.+.++. .|.+++|+|++|||||||++.|+|... ..|+.+.+.+ .+..... ..+...+++..
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~------~~p~~G~I~~--~g~~i~~~~~~~~~~~~i~~v~Q~~ 106 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED------YEVTGGTVEF--KGKDLLALSPEDRAGEGIFMAFQYP 106 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT------CEEEEEEEEE--TTEEGGGSCHHHHHHHTEEEECSSC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC------CCCCCeEEEE--CCEECCcCCHHHHhhCCEEEEccCc
Confidence 56665554 899999999999999999999999741 0344554443 3321111 11344455655
Q ss_pred CCCCCccccccchhhh--h------------hhhcccccccccceE----EcC-CCC-CCh-hhhhhhcccChHHHHHHH
Q 008954 261 LPFSGLTTFGGAFLSK--F------------ECSQMSHPLLDQVTF----VDT-PGV-LSG-EKQRTQRTYDFTGVISWF 319 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~--~------------~~~~~~~~ll~~l~l----vDT-PG~-~~~-~~~~~~~~~~~~~~~~~~ 319 (547)
..+.+++...+..... . ........+++.+.+ .|. |+. +|+ ++|++. +++++
T Consensus 107 ~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~-------iAraL 179 (267)
T 2zu0_C 107 VEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND-------ILQMA 179 (267)
T ss_dssp CCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH-------HHHHH
T ss_pred cccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH-------HHHHH
Confidence 5555554444331110 0 001112233443433 233 442 554 677665 89999
Q ss_pred hhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 320 AAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 320 ~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+.+++++|++ +.+.++.....+.++++.+.+.+..++++-+..+
T Consensus 180 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 180 VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 9999999999 4444433344555666666555677777766544
No 249
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=98.83 E-value=1.5e-08 Score=82.64 Aligned_cols=73 Identities=12% Similarity=0.238 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhhC-CCCC-CcccHHHHHHHHhh-CC------CCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIAD-SDGD-GRITGNDATKFLGL-SK------LSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLA 83 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D-~~~~-G~Is~~e~~~~l~~-~~------l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~ 83 (547)
+.....++++|..+| .||+ |+||.+|++.+++. .+ ++..++.++++.+|.|+||.|+|+||+.++.-+..+
T Consensus 6 e~~~~~l~~~F~~fd~~dg~~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~~~ 85 (93)
T 4eto_A 6 EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMM 85 (93)
T ss_dssp HHHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHH
Confidence 344789999999997 6885 89999999999985 32 468899999999999999999999999999877777
Q ss_pred hc
Q 008954 84 QA 85 (547)
Q Consensus 84 q~ 85 (547)
+|
T Consensus 86 ~~ 87 (93)
T 4eto_A 86 CN 87 (93)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 250
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.82 E-value=1.9e-09 Score=104.51 Aligned_cols=155 Identities=12% Similarity=0.198 Sum_probs=88.6
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~~ 261 (547)
.+.+.++. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ ++..... ...+..+++...
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~I~i--~g~~~~~~~~~~~~~~i~~v~Q~~~ 93 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY--------IPENGQVLI--DGHDLALADPNWLRRQVGVVLQDNV 93 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEE--TTEETTTSCHHHHHHHEEEECSSCC
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCcEEEE--CCEEhhhCCHHHHHhcEEEEeCCCc
Confidence 56666555 89999999999999999999999987 344454443 2221111 112344555544
Q ss_pred CCCCccccccchhhhhh-hhcccccccccce--------------EEc-CCCCCCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 262 PFSGLTTFGGAFLSKFE-CSQMSHPLLDQVT--------------FVD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~~-~~~~~~~ll~~l~--------------lvD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
.+. .+..++..+.... .......++..+. .++ .++-+|+ ++|++. ++++++.+++
T Consensus 94 l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~-------iAraL~~~p~ 165 (247)
T 2ff7_A 94 LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIA-------IARALVNNPK 165 (247)
T ss_dssp CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHH-------HHHHHTTCCS
T ss_pred ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHH-------HHHHHhcCCC
Confidence 443 2444443221000 0000001111111 122 2345554 667655 8999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++|++ +.+.++.....+.+++..+. .+..++++-+..+
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~ 205 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS 205 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH
Confidence 99999 44544334455667777775 4677777766544
No 251
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=98.82 E-value=1.4e-08 Score=81.95 Aligned_cols=69 Identities=28% Similarity=0.478 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+++++...++.+|..+|.+++|+|+.+++..+++.. .++..++..++..+|.+++|.|+|+||+.++.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~dg~i~~~eF~~~~~ 83 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMV 83 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHH
Confidence 5789999999999999999999999999999999984 46789999999999999999999999998775
No 252
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=98.82 E-value=1.6e-08 Score=84.15 Aligned_cols=74 Identities=12% Similarity=0.255 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhhC-CCCC-CcccHHHHHHHHhh-C------CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIAD-SDGD-GRITGNDATKFLGL-S------KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLA 83 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D-~~~~-G~Is~~e~~~~l~~-~------~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~ 83 (547)
++....++++|..|| .|++ |+|+.+|++.+++. . .++..++.++++.+|.|+||.|+|+||+.+|.-+..+
T Consensus 9 e~~~~~l~~aF~~fD~~dgd~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~~~~~ 88 (104)
T 3zwh_A 9 EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSSIAMM 88 (104)
T ss_dssp HHHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHH
Confidence 345689999999997 7785 89999999999986 3 2478999999999999999999999999999877777
Q ss_pred hcC
Q 008954 84 QAG 86 (547)
Q Consensus 84 q~g 86 (547)
+|.
T Consensus 89 ~~~ 91 (104)
T 3zwh_A 89 SNE 91 (104)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 253
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.82 E-value=7.3e-09 Score=108.39 Aligned_cols=174 Identities=12% Similarity=0.088 Sum_probs=84.4
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHH--hhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCC-e-EEEEeccCC
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWF--AAKCDLILLLFDPHKLDISDEFKRVIASLRGNDD-K-IRVVLNKAD 363 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~--~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~-~-iivVlNK~D 363 (547)
..+.|+||||.......... ..... +..+|.+++|+|+.. +. .....++.+... . + ..+|+||+|
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~-------~l~~i~~~~~~d~vllVvda~~-g~--~~~~~~~~~~~~-~~~i~gvVlnK~D 249 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLE-------EMKQIKEITNPDEIILVIDGTI-GQ--QAGIQAKAFKEA-VGEIGSIIVTKLD 249 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHH-------HHHHTTSSSCCSEEEEEEEGGG-GG--GHHHHHHHHHTT-SCSCEEEEEECSS
T ss_pred CCEEEEcCCCCccccHHHHH-------HHHHHHHHhcCcceeEEeeccc-cH--HHHHHHHHHhhc-ccCCeEEEEeCCC
Confidence 36899999999864211111 11111 347999999999865 32 233444555443 4 4 889999999
Q ss_pred CcChHH-HHHHHHHHHHhh-----hh----ccCCCCcEEEEecccCCCC-CCCC-----CCCCc-----chHhhHHH--H
Q 008954 364 QVDTQQ-LMRVYGALMWSL-----GK----VLNTPEVVRVYIGSFNDKP-INGE-----VVGPI-----GQELFEKE--Q 420 (547)
Q Consensus 364 ~~~~~~-l~~~~~~l~~~l-----~~----~~~~~~v~~v~isa~~~~~-l~~~-----~~~~~-----~~~~~~~~--~ 420 (547)
...... ........-..+ ++ +..+. +..++|+..|.+ +... ...++ ...+...+ .
T Consensus 250 ~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~--~~~~~s~l~g~gdi~~L~e~~~~~~~e~~~~~~~k~~~~~~~~ 327 (432)
T 2v3c_C 250 GSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFD--PKKFISRLLGMGDLESLLEKAEDMVDEKTEESIDAIMRGKFTL 327 (432)
T ss_dssp SCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCC--HHHHHHHHTCSSCSSTTSSTTTSCSCSSSSTTHHHHCCSCCHH
T ss_pred CccchHHHHHHHHHHCCCEEEeecCccccccccCC--HHHHHHHHcCCCcHHHHHHHHHHHHHhhhHHHHHHHHcCCCCH
Confidence 875322 222111110000 00 01111 113678888877 5441 11222 11111111 3
Q ss_pred HHHHHHHhh------------chhhHHH-HHHHHHHH-HHHHHHHHHHHH----HHHHhhcccccccHHHHHHHHH
Q 008954 421 DDLLMDLID------------IPKKACD-RQINEFVK-RARAAKIHAYII----SHLKKEMPTMMGKAKAQQRLID 478 (547)
Q Consensus 421 e~l~~~l~~------------~~~~~~~-~~i~~~~~-~~~~~~i~a~i~----~~~~~~~~~~~gk~~~~~~~i~ 478 (547)
++++..+++ ..|+... ..++.+.. .....++.|.|. +++++++ +| ++..++.|.
T Consensus 328 ~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~--~i--~~sr~~rI~ 399 (432)
T 2v3c_C 328 NELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPK--II--KASRIRRIA 399 (432)
T ss_dssp HHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCT--TC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcc--cc--CHHHHHHHH
Confidence 667776653 4444322 12244432 234688999999 8888876 45 345555444
No 254
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.79 E-value=1.9e-08 Score=101.44 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=78.0
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc----------cccCCceeeecCCCCCCCc
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE----------RTIPGNTIAVHADLPFSGL 266 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~----------~~~~g~~~~~~~~~~~~~l 266 (547)
..|.+|+|+|++||||||+++.|+|.. .|..+++.+....... ....|.....+....+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l--------~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~ 198 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL--------KNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAA 198 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH--------HHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--------HhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHH
Confidence 467899999999999999999999976 2344444443322210 0011222222221111111
Q ss_pred cccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHH
Q 008954 267 TTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIA 346 (547)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~ 346 (547)
+.+.+...... .-..+.++||+|.......... ....+++ +-.+|-.++++|+.. ..+..+.++
T Consensus 199 ~v~e~l~~~~~--------~~~d~vliDtaG~~~~~~~l~~---eL~~i~r--al~~de~llvLDa~t---~~~~~~~~~ 262 (328)
T 3e70_C 199 VAYDAIQHAKA--------RGIDVVLIDTAGRSETNRNLMD---EMKKIAR--VTKPNLVIFVGDALA---GNAIVEQAR 262 (328)
T ss_dssp HHHHHHHHHHH--------HTCSEEEEEECCSCCTTTCHHH---HHHHHHH--HHCCSEEEEEEEGGG---TTHHHHHHH
T ss_pred HHHHHHHHHHh--------ccchhhHHhhccchhHHHHHHH---HHHHHHH--HhcCCCCEEEEecHH---HHHHHHHHH
Confidence 11222111110 1135678999999753212111 1112333 345888999999764 234455566
Q ss_pred HHhCCCCeEEEEeccCCCcC
Q 008954 347 SLRGNDDKIRVVLNKADQVD 366 (547)
Q Consensus 347 ~l~~~~~~iivVlNK~D~~~ 366 (547)
.+.+.-....+++||.|...
T Consensus 263 ~~~~~~~it~iilTKlD~~a 282 (328)
T 3e70_C 263 QFNEAVKIDGIILTKLDADA 282 (328)
T ss_dssp HHHHHSCCCEEEEECGGGCS
T ss_pred HHHHhcCCCEEEEeCcCCcc
Confidence 55533233468899999754
No 255
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=98.79 E-value=1.4e-08 Score=81.05 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=64.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHH---HHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 7 PITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQE---LKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 7 ~~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~---l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
....+++++.+.++.+|..+|.+++|+|+..++..+++.. .++..+ +..++..+|.+++|.|++ ||+.++.
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~~~~~ 79 (86)
T 1j7q_A 4 KARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPE-EWLTLCS 79 (86)
T ss_dssp CCCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHHHHHH
Confidence 3457899999999999999999999999999999999984 567888 999999999999999999 9998764
No 256
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.77 E-value=5.1e-09 Score=104.48 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=88.4
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~~ 261 (547)
++.+.+|. .|.+|+|+|++|||||||++.|+|.. .|+.+.+.+ +|.+... ...+++++|...
T Consensus 69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~--------~p~~G~I~i--~G~~i~~~~~~~~r~~i~~v~Q~~~ 138 (306)
T 3nh6_A 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY--------DISSGCIRI--DGQDISQVTQASLRSHIGVVPQDTV 138 (306)
T ss_dssp EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS--------CCSEEEEEE--TTEETTSBCHHHHHHTEEEECSSCC
T ss_pred eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC--------CCCCcEEEE--CCEEcccCCHHHHhcceEEEecCCc
Confidence 45565554 89999999999999999999999987 355555443 3322211 123556677766
Q ss_pred CCCCccccccchhhhh-------hh---hcccccccc----c-ceEEcCCC-CCCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 262 PFSGLTTFGGAFLSKF-------EC---SQMSHPLLD----Q-VTFVDTPG-VLSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~-------~~---~~~~~~ll~----~-l~lvDTPG-~~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
.|.+ +..+|..+... .. .....+.+. . -+.++..| -+|+ ++|++. +|++++.+|+
T Consensus 139 lf~~-Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRva-------iARAL~~~p~ 210 (306)
T 3nh6_A 139 LFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVA-------IARTILKAPG 210 (306)
T ss_dssp CCSE-EHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHH-------HHHHHHHCCS
T ss_pred cCcc-cHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHH-------HHHHHHhCCC
Confidence 6643 54444422110 00 000001100 0 12334333 3444 677765 8999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
++|++ +.+.+......+.+.+..+.. +..+++|.+.
T Consensus 211 iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~ 248 (306)
T 3nh6_A 211 IILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHR 248 (306)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcC
Confidence 99999 444443333445556666554 5677776554
No 257
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.77 E-value=3.1e-09 Score=102.39 Aligned_cols=149 Identities=16% Similarity=0.186 Sum_probs=80.1
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCcc
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLT 267 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~ 267 (547)
.+++.++. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ ++ ..+.+++... +...+
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~I~~--~g-------~i~~v~Q~~~-~~~~t 81 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM--------DKVEGHVAI--KG-------SVAYVPQQAW-IQNDS 81 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS--------EEEEEEEEE--CS-------CEEEECSSCC-CCSEE
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCceEEE--CC-------EEEEEcCCCc-CCCcC
Confidence 55555554 89999999999999999999999987 355555443 11 1233334332 22333
Q ss_pred ccccchhhh------hhhhcccccccccc--------eEEc-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEEec
Q 008954 268 TFGGAFLSK------FECSQMSHPLLDQV--------TFVD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLLFD 331 (547)
Q Consensus 268 ~~~~~~~~~------~~~~~~~~~ll~~l--------~lvD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv~d 331 (547)
..++..+.. .........++..+ +.++ .|+-+|+ ++|++. ++++++.+|+++|++-.
T Consensus 82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~-------lAraL~~~p~lllLDEP 154 (237)
T 2cbz_A 82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVS-------LARAVYSNADIYLFDDP 154 (237)
T ss_dssp HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHH-------HHHHHHHCCSEEEEEST
T ss_pred HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHH-------HHHHHhcCCCEEEEeCc
Confidence 333321110 00000000000001 1233 3445554 667655 89999999999999943
Q ss_pred CCCCCCCHHHHHHHHHHh-----CCCCeEEEEeccCCC
Q 008954 332 PHKLDISDEFKRVIASLR-----GNDDKIRVVLNKADQ 364 (547)
Q Consensus 332 ~~~~~~~~~~~~ll~~l~-----~~~~~iivVlNK~D~ 364 (547)
...++.. ....+++.+. ..+..++++-+..+.
T Consensus 155 ts~LD~~-~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 155 LSAVDAH-VGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp TTTSCHH-HHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred ccccCHH-HHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 3332221 1233444442 235677777665553
No 258
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.76 E-value=5.6e-09 Score=102.70 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=86.3
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~~ 261 (547)
.+.+.+|. .|.+++|+|++|||||||++.|+|.. .|+.+.+.+ ++..... ...+..+++...
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--------~p~~G~I~~--~g~~i~~~~~~~~~~~i~~v~Q~~~ 103 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY--------QPTGGKVLL--DGEPLVQYDHHYLHTQVAAVGQEPL 103 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEE--TTEEGGGBCHHHHHHHEEEECSSCC
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCCEEEE--CCEEcccCCHHHHhccEEEEecCCc
Confidence 45555544 89999999999999999999999987 344454443 2321111 112344555544
Q ss_pred CCCCccccccchhhh--------hh---hhcccccccccc-----eEEc-CCCCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 262 PFSGLTTFGGAFLSK--------FE---CSQMSHPLLDQV-----TFVD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~--------~~---~~~~~~~ll~~l-----~lvD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
.+. .+..++..+.. .. .......++..+ .+.| .|+-+|+ ++|++. ++++++.++
T Consensus 104 l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~-------lAraL~~~p 175 (271)
T 2ixe_A 104 LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVA-------LARALIRKP 175 (271)
T ss_dssp CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHH-------HHHHHTTCC
T ss_pred ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHH-------HHHHHhcCC
Confidence 443 24444432110 00 000011111111 1223 3455565 667655 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhC-CCCeEEEEecc
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~-~~~~iivVlNK 361 (547)
+++|++ +.+.++.....+.+++..+.. .+..+++|-+-
T Consensus 176 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 999999 444443334455666666643 36667666553
No 259
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.75 E-value=3.7e-09 Score=101.39 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=67.4
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCc
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGL 266 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l 266 (547)
..+.+.++. .|..++|+|++|||||||++.|+|.. .|+.+.+.+ ++ ....+++....+..
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~--~g-------~i~~v~q~~~~~~~- 83 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--------EPSEGKIKH--SG-------RISFCSQFSWIMPG- 83 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS--------CCSEEEEEE--CS-------CEEEECSSCCCCSB-
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------cCCccEEEE--CC-------EEEEEecCCcccCC-
Confidence 356666555 89999999999999999999999987 344554443 11 12334444333332
Q ss_pred cccccchhh------hhhh---hcccccccccce-----EEc-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEEe
Q 008954 267 TTFGGAFLS------KFEC---SQMSHPLLDQVT-----FVD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLLF 330 (547)
Q Consensus 267 ~~~~~~~~~------~~~~---~~~~~~ll~~l~-----lvD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv~ 330 (547)
+..++.... +... .....+.+..+. .++ .++-+|+ ++|++. ++++++.+++++|++-
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~-------lAral~~~p~lllLDE 156 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS-------LARAVYKDADLYLLDS 156 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHH-------HHHHHHSCCSEEEEES
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHH-------HHHHHhcCCCEEEEEC
Confidence 333332110 0000 000011111111 112 2345554 667655 8999999999999994
Q ss_pred cCC
Q 008954 331 DPH 333 (547)
Q Consensus 331 d~~ 333 (547)
...
T Consensus 157 Pts 159 (229)
T 2pze_A 157 PFG 159 (229)
T ss_dssp TTT
T ss_pred ccc
Confidence 333
No 260
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=98.75 E-value=2e-08 Score=84.85 Aligned_cols=77 Identities=12% Similarity=0.218 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHhh-----C--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHH
Q 008954 11 CSKEHQKIYREWFDIAD-SDGDG-RITGNDATKFLGL-----S--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVS 81 (547)
Q Consensus 11 ls~ee~~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~~-----~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~ 81 (547)
.+.++.+.++++|..|| .|++| +|+.+|++.+|+. . .++.+++.++++.+|.|++|.|+|+||+.+|.-..
T Consensus 16 ~~~~~~~~l~~aF~~fD~~dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~~~~ 95 (113)
T 2lnk_A 16 PLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIA 95 (113)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHH
Confidence 34566889999999999 89997 9999999999975 2 35778999999999999999999999999887666
Q ss_pred HHhcCC
Q 008954 82 LAQAGR 87 (547)
Q Consensus 82 ~~q~g~ 87 (547)
.++++.
T Consensus 96 ~~~~~~ 101 (113)
T 2lnk_A 96 MMCNEF 101 (113)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 666543
No 261
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.75 E-value=1.7e-08 Score=110.56 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=77.1
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCC-CCCCcccceeEE-EEeCCCccc-cCCceeeecCCCCCCCccccccchhh-
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAH-IGPEPTTDRFVV-VMSGPDERT-IPGNTIAVHADLPFSGLTTFGGAFLS- 275 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~-v~~~~~T~~~~~-i~~~~~~~~-~~g~~~~~~~~~~~~~l~~~~~~~~~- 275 (547)
|.|+|+|++|||||||+|+|+|.. .+ .++..+-....+ ..+...... .......++....+...+..++....
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~---~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~ 122 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA---LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ 122 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH
T ss_pred CeEEEECCCCChHHHHHHHHhCCC---CCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHH
Confidence 559999999999999999999986 33 222222222121 112111101 11111222222222222221211100
Q ss_pred -hhhh-----------hcccccccccceEEcCCCCCChhhhhhhc--ccChHHHHHHHhhcC-CeEEEEecCCCCCCCHH
Q 008954 276 -KFEC-----------SQMSHPLLDQVTFVDTPGVLSGEKQRTQR--TYDFTGVISWFAAKC-DLILLLFDPHKLDISDE 340 (547)
Q Consensus 276 -~~~~-----------~~~~~~ll~~l~lvDTPG~~~~~~~~~~~--~~~~~~~~~~~~~~a-D~illv~d~~~~~~~~~ 340 (547)
.... .....+....+.++|.||+.......... ...+..+++.++.+. .++++++++........
T Consensus 123 ~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~ 202 (608)
T 3szr_A 123 NAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE 202 (608)
T ss_dssp HHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH
T ss_pred HHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH
Confidence 0000 00011112468999999987531111110 001234555655555 45555555432122345
Q ss_pred HHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 341 FKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 341 ~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
...+++.+...+.+.++|+||+|++..
T Consensus 203 ~l~la~~v~~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 203 ALSMAQEVDPEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHHCSSCCSEEEEEECGGGSSS
T ss_pred HHHHHHHHhhcCCceEEEecchhhcCc
Confidence 577888888888999999999999864
No 262
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.74 E-value=4.3e-09 Score=99.87 Aligned_cols=92 Identities=9% Similarity=0.070 Sum_probs=53.3
Q ss_pred cceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcChH
Q 008954 289 QVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQ 368 (547)
Q Consensus 289 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~~ 368 (547)
.+.++||+|..... . .++ ..++.+++++|+... ... ....... .+.|+++|+||+|+.+..
T Consensus 110 d~iiidt~G~~~~~-~----~~~---------~~~~~~i~vvd~~~~-~~~-~~~~~~~---~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 110 DLLLIENVGNLICP-V----DFD---------LGENYRVVMVSVTEG-DDV-VEKHPEI---FRVADLIVINKVALAEAV 170 (221)
T ss_dssp SEEEEEEEEBSSGG-G----GCC---------CSCSEEEEEEEGGGC-TTH-HHHCHHH---HHTCSEEEEECGGGHHHH
T ss_pred CEEEEeCCCCCCCC-c----hhc---------cccCcEEEEEeCCCc-chh-hhhhhhh---hhcCCEEEEecccCCcch
Confidence 68899999963211 0 111 246788999998763 222 1222222 247889999999986431
Q ss_pred --HHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 369 --QLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 369 --~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
+..+....+ ... .+....+++||++|.++.+
T Consensus 171 ~~~~~~~~~~~----~~~--~~~~~i~~~Sa~~g~gi~~ 203 (221)
T 2wsm_A 171 GADVEKMKADA----KLI--NPRAKIIEMDLKTGKGFEE 203 (221)
T ss_dssp TCCHHHHHHHH----HHH--CTTSEEEECBTTTTBTHHH
T ss_pred hhHHHHHHHHH----HHh--CCCCeEEEeecCCCCCHHH
Confidence 222222222 222 1234558999999998764
No 263
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.74 E-value=3.4e-09 Score=109.23 Aligned_cols=153 Identities=21% Similarity=0.194 Sum_probs=85.4
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcccc------CCceeeecCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTI------PGNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~------~g~~~~~~~~ 260 (547)
.++++.++. .|.+++|+|++|+|||||+++|+|.. . +.+.+. .++.+.... ..+.+++|..
T Consensus 35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--------~-~~G~I~--i~G~~i~~~~~~~~rr~ig~v~Q~~ 103 (390)
T 3gd7_A 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--------N-TEGEIQ--IDGVSWDSITLEQWRKAFGVIPQKV 103 (390)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS--------E-EEEEEE--ESSCBTTSSCHHHHHHTEEEESCCC
T ss_pred EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC--------C-CCeEEE--ECCEECCcCChHHHhCCEEEEcCCc
Confidence 356666655 89999999999999999999999975 2 233333 244332211 2455667766
Q ss_pred CCCCCccccccchhhhhhhhcccccccccceE---Ec-CCCC-----------CCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 261 LPFSGLTTFGGAFLSKFECSQMSHPLLDQVTF---VD-TPGV-----------LSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~l---vD-TPG~-----------~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
..|. .+..+|..............+++.+.+ .| .|+- +|+ ++|++. ++++++.+++
T Consensus 104 ~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRva-------lARAL~~~P~ 175 (390)
T 3gd7_A 104 FIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC-------LARSVLSKAK 175 (390)
T ss_dssp CCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHH-------HHHHHHTTCC
T ss_pred ccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHH-------HHHHHhcCCC
Confidence 5554 244444321100000001111112211 11 2322 454 677765 8999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
++|++ +.+.+.....++.+.++.+. .+..+++|-+.
T Consensus 176 lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd 213 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEAR 213 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSS
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcC
Confidence 99999 44544333344555555443 25566666554
No 264
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.73 E-value=1.2e-08 Score=99.69 Aligned_cols=155 Identities=16% Similarity=0.222 Sum_probs=87.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~~ 261 (547)
.+++.++. .|..++|+|++|||||||++.|+|.. .| .+.+.+ ++..... ......+++...
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~~-~G~I~i--~g~~i~~~~~~~~~~~i~~v~Q~~~ 103 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY--------DA-EGDIKI--GGKNVNKYNRNSIRSIIGIVPQDTI 103 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS--------CC-EEEEEE--TTEEGGGBCHHHHHTTEEEECSSCC
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC--------CC-CeEEEE--CCEEhhhcCHHHHhccEEEEcCCCc
Confidence 56665554 89999999999999999999999976 12 233332 3321111 123445556554
Q ss_pred CCCCccccccchhhhhhh-hcccccccccce--------------EEc-CCCCCCh-hhhhhhcccChHHHHHHHhhcCC
Q 008954 262 PFSGLTTFGGAFLSKFEC-SQMSHPLLDQVT--------------FVD-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCD 324 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~-~~~~~~ll~~l~--------------lvD-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD 324 (547)
.+. .+..++..+..... .......++.+. .++ .++-+|+ ++|++. ++++++.+++
T Consensus 104 l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~-------lAraL~~~p~ 175 (260)
T 2ghi_A 104 LFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIA-------IARCLLKDPK 175 (260)
T ss_dssp CCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHH-------HHHHHHHCCS
T ss_pred ccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHH-------HHHHHHcCCC
Confidence 443 34444432211000 000000111111 122 3445555 667655 8999999999
Q ss_pred eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCC
Q 008954 325 LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 325 ~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~ 364 (547)
++|++ +.+.++.....+.+++..+.+ +..+++|-+..+.
T Consensus 176 lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~ 216 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST 216 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH
Confidence 99999 445543344556667777754 6777777665443
No 265
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.72 E-value=1.2e-08 Score=104.84 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=49.4
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhh
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 275 (547)
+..+..|+|+|.||+|||||+|+|+|.. ..+++.|+||....... ...++..+ .
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~---~~~~~~p~tTi~p~~g~----v~v~~~r~-------------------~ 72 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQ---ASAENFPFCTIDPNESR----VPVPDERF-------------------D 72 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC----------------CCSEEE----EECCCHHH-------------------H
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCC---ccccCCCccccCceeEE----EEECCccc-------------------e
Confidence 3456789999999999999999999987 56666676653211000 00010000 0
Q ss_pred hhhhhcccc-cccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCC
Q 008954 276 KFECSQMSH-PLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHK 334 (547)
Q Consensus 276 ~~~~~~~~~-~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~ 334 (547)
.+.....|. ..-..+.++||||+..+..+ .+++.. .....+.++|++++|+|+.+
T Consensus 73 ~l~~~~~p~~~~~~~i~lvDtpGl~~~as~--~~glg~--~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 73 FLCQYHKPASKIPAFLNVVDIAGLVKGAHN--GQGLGN--AFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHCCSEEECCEEEEEECCC-------------CC--HHHHHHHTSSSEEEEEEC--
T ss_pred eeccccCcccccccccEEEECCCcccccch--hhHHHH--HHHHHHHhcCeEEEEEecCC
Confidence 000000010 01136899999999875322 112211 23445789999999999875
No 266
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=98.72 E-value=4e-08 Score=79.43 Aligned_cols=68 Identities=25% Similarity=0.379 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 11 CSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 11 ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.++++.+.++.+|..+|.+++|+|+.+++..++... .++..++..+|..+|.+++|.|+|+||+.++.
T Consensus 3 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~~~~ 72 (92)
T 2kn2_A 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMM 72 (92)
T ss_dssp CCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 567788899999999999999999999999999985 47889999999999999999999999998764
No 267
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.72 E-value=1.2e-08 Score=111.30 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=90.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~~ 261 (547)
.+++.+++ +|..++|+|++|+|||||++.|+|.. .|+.+.+.+ +|.+... ....+.+.|...
T Consensus 358 ~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--------~p~~G~i~~--~g~~~~~~~~~~~~~~i~~v~Q~~~ 427 (582)
T 3b60_A 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY--------DIDEGHILM--DGHDLREYTLASLRNQVALVSQNVH 427 (582)
T ss_dssp SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT--------CCSEEEEEE--TTEETTTBCHHHHHHTEEEECSSCC
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc--------CCCCCeEEE--CCEEccccCHHHHHhhCeEEccCCc
Confidence 45555544 89999999999999999999999987 345555443 3322111 123455666665
Q ss_pred CCCCccccccchhhh-hh-hhcccccccccce--------------EEcCC-CCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 262 PFSGLTTFGGAFLSK-FE-CSQMSHPLLDQVT--------------FVDTP-GVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~-~~-~~~~~~~ll~~l~--------------lvDTP-G~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
.|.+ +..+|..... .. ......+.++.+. .++.. +-.|+ ++||+. ++++++.+|
T Consensus 428 l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~-------iAral~~~p 499 (582)
T 3b60_A 428 LFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA-------IARALLRDS 499 (582)
T ss_dssp CCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHH-------HHHHHHHCC
T ss_pred CCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHH-------HHHHHHhCC
Confidence 5654 5544442211 00 0000011111111 12222 33444 677765 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCC
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~ 364 (547)
+++|+| +.+.|........+.++.+.+ +..+++|-+..+.
T Consensus 500 ~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~ 541 (582)
T 3b60_A 500 PILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST 541 (582)
T ss_dssp SEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH
Confidence 999999 444443333445566666654 7788888776553
No 268
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=98.71 E-value=6.5e-08 Score=78.55 Aligned_cols=72 Identities=13% Similarity=0.219 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhhCCCCCC---cccHHHHHHHHhh-----C--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHH
Q 008954 14 EHQKIYREWFDIADSDGDG---RITGNDATKFLGL-----S--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLA 83 (547)
Q Consensus 14 ee~~~~~~~F~~~D~~~~G---~Is~~e~~~~l~~-----~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~ 83 (547)
.....++++|..+| +++| +|+.+|++.+++. . .++..++.++++.+|.|++|.|+|+||+.++.-+..+
T Consensus 6 ~~~~~l~~~F~~~D-~~dG~~g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~l~~~ 84 (92)
T 3rm1_A 6 KAVVALIDVFHQYS-GREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMITTA 84 (92)
T ss_dssp HHHHHHHHHHHHHH-TSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-cCCCCcCeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHH
Confidence 45788999999999 7766 9999999999987 3 3578899999999999999999999999999888777
Q ss_pred hcC
Q 008954 84 QAG 86 (547)
Q Consensus 84 q~g 86 (547)
+|.
T Consensus 85 ~~~ 87 (92)
T 3rm1_A 85 CHE 87 (92)
T ss_dssp GGG
T ss_pred HHH
Confidence 764
No 269
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.70 E-value=1.4e-08 Score=110.97 Aligned_cols=155 Identities=16% Similarity=0.226 Sum_probs=88.0
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~ 260 (547)
+.+++.+++ +|..++|+|++|+|||||++.|+|.. .|+.+.+.+ +|.+... ....+.+.|..
T Consensus 357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~--------~p~~G~i~~--~g~~~~~~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b5x_A 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY--------DVDSGSICL--DGHDVRDYKLTNLRRHFALVSQNV 426 (582)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCCEEEE--CCEEhhhCCHHHHhcCeEEEcCCC
Confidence 356666655 89999999999999999999999987 344454443 2211111 12345566665
Q ss_pred CCCCCccccccchhhh-hh-hhcccccccccceE--------------EcC-CCCCCh-hhhhhhcccChHHHHHHHhhc
Q 008954 261 LPFSGLTTFGGAFLSK-FE-CSQMSHPLLDQVTF--------------VDT-PGVLSG-EKQRTQRTYDFTGVISWFAAK 322 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~-~~-~~~~~~~ll~~l~l--------------vDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~ 322 (547)
..|.+ +..+|..... .. ......+.++.+.+ ++. ++-.|+ ++||+. ++++++.+
T Consensus 427 ~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~-------iAral~~~ 498 (582)
T 3b5x_A 427 HLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA-------IARALLRD 498 (582)
T ss_pred ccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHH-------HHHHHHcC
Confidence 55543 4444432211 00 00000111111111 111 123443 677665 89999999
Q ss_pred CCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 323 CDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 323 aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
|+++|+| +.+.|........+.++.+.+ +..+++|-+..
T Consensus 499 p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~ 539 (582)
T 3b5x_A 499 APVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRL 539 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCH
Confidence 9999999 444443334445566666654 67777776643
No 270
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=98.69 E-value=4.6e-08 Score=80.68 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHhh-------CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIAD-SDGDG-RITGNDATKFLGL-------SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLA 83 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~~-------~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~ 83 (547)
+++.+.++++|..+| .|++| +|+.+|++.+++. ..++..++..++..+|.|++|.|+|+||+.++.-...+
T Consensus 6 ~~~~~~l~~~F~~fDd~dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~ 85 (99)
T 2y5i_A 6 EGAMDALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (99)
T ss_dssp HHHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 445789999999997 89998 9999999999985 23578899999999999999999999999888655544
Q ss_pred hc
Q 008954 84 QA 85 (547)
Q Consensus 84 q~ 85 (547)
++
T Consensus 86 ~~ 87 (99)
T 2y5i_A 86 CN 87 (99)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 271
>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}
Probab=98.68 E-value=3.5e-08 Score=84.22 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh-------CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhc
Q 008954 13 KEHQKIYREWFDIADSDGDGRITGNDATKFLGL-------SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQA 85 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~-------~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~ 85 (547)
+...+.+..+|..||.| +|+||..|++.+|++ ...+.+++.++++.+|.|+||.|+|+||+.+|.-+..++|
T Consensus 11 E~~ie~l~~~F~~yd~d-dG~Is~~EL~~~l~~~~~~~l~~~~~~~~v~~~i~~~D~d~DG~IdF~EF~~lm~~l~~~~h 89 (121)
T 4drw_A 11 EHAMETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLTIACN 89 (121)
T ss_dssp HHHHHHHHHTTGGGSCT-TCSCCHHHHHHHTTTSCHHHHTTSSCTTHHHHHHHHHCTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCEEcHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 44578999999999998 899999999999975 3467789999999999999999999999999987777776
No 272
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.68 E-value=3.5e-08 Score=101.62 Aligned_cols=110 Identities=11% Similarity=0.081 Sum_probs=65.2
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhh
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 275 (547)
+..+..|+|+|+||||||||+|+|+|... +.+++.|+|+..... |.... .+ .. +.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~--a~~~~~p~tTi~p~~----------G~v~v-------~~-----~r-~~ 71 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVL--GNPANYPYATIDPEE----------AKVAV-------PD-----ER-FD 71 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTT--TSTTCCSSCCCCTTE----------EEEEE-------CC-----HH-HH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCc--ccccCCCceeeccee----------eeeee-------CC-----cc-hh
Confidence 45688999999999999999999999885 588888877642110 00000 00 00 00
Q ss_pred hhhhhccccccc-ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCC
Q 008954 276 KFECSQMSHPLL-DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHK 334 (547)
Q Consensus 276 ~~~~~~~~~~ll-~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~ 334 (547)
.......+.... ..+.++||||+..+... .+.+. ......+..+|.+++++|+.+
T Consensus 72 ~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~--~e~L~--~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 72 WLCEAYKPKSRVPAFLTVFDIAGLTKGAST--GVGLG--NAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHCCSEEECEEEEEECTGGGCCCCCS--SSSSC--HHHHHHHTTCSEEEEEEECCC
T ss_pred hhhhhcccccccCcceEEEeccccccCCcH--HHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 000001111111 25789999999864211 12221 123444789999999999864
No 273
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A
Probab=98.68 E-value=2.4e-08 Score=81.11 Aligned_cols=74 Identities=8% Similarity=0.191 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHhh-CC---CCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcC
Q 008954 13 KEHQKIYREWFDIAD-SDGDG-RITGNDATKFLGL-SK---LSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAG 86 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~~-~~---l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g 86 (547)
+++...++++|..+| .|++| +|+.+|++.+++. .+ ++..++..+++.+|.+++|.|+|+||+.++.-+..++|+
T Consensus 6 ~~~~~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~~~~~~~~~~i~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~ 85 (92)
T 2kax_A 6 EKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTMLCMAYND 85 (92)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSSEEEHHHHHHHHHHHSCCTTTCCTTHHHHHHHHTTTCSSEEEHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeeCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 455789999999999 99999 9999999999986 22 677889999999999999999999999998766666554
No 274
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A
Probab=98.67 E-value=4.1e-08 Score=80.28 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhhC-CCC-CCcccHHHHHHHHhh-C------CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIAD-SDG-DGRITGNDATKFLGL-S------KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLA 83 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D-~~~-~G~Is~~e~~~~l~~-~------~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~ 83 (547)
+++...++++|..+| .|+ +|+|+.+|++.+++. . .++..++.+++..+|.+++|.|+|+||+.++.-...+
T Consensus 5 ~~~~~~l~~~F~~fD~~dgd~G~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~ 84 (95)
T 1j55_A 5 ETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAITSA 84 (95)
T ss_dssp HHHHHHHHHHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHH
Confidence 455789999999999 788 589999999999986 1 2466789999999999999999999999888655544
Q ss_pred hc
Q 008954 84 QA 85 (547)
Q Consensus 84 q~ 85 (547)
+|
T Consensus 85 ~~ 86 (95)
T 1j55_A 85 CH 86 (95)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 275
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Probab=98.67 E-value=2.6e-08 Score=81.50 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHhh-------CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIAD-SDGDG-RITGNDATKFLGL-------SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLA 83 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~~-------~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~ 83 (547)
+++.+.++++|+.+| .|++| +|+.+|++.+++. ..++..++.++++.+|.|++|.|+|+||+.++.-...+
T Consensus 8 e~~~~~l~~~F~~fD~~dg~gg~I~~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~ 87 (95)
T 2wcb_A 8 EEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKA 87 (95)
T ss_dssp HHHHHHHHHHHHHHHTSSSSTTEEEHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTSSSSTTSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCccCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHH
Confidence 445779999999999 89998 9999999999975 24678899999999999999999999999988766655
Q ss_pred hc
Q 008954 84 QA 85 (547)
Q Consensus 84 q~ 85 (547)
+|
T Consensus 88 ~~ 89 (95)
T 2wcb_A 88 AH 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 276
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.64 E-value=3.7e-08 Score=98.31 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=78.7
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc----------cCCceeeecCCCCCCCcc
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT----------IPGNTIAVHADLPFSGLT 267 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~----------~~g~~~~~~~~~~~~~l~ 267 (547)
.|.+|+|+|++|||||||++.|+|.. .|+.+++.+...+..... ..+....++....+...+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll--------~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~ 172 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY--------QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAAL 172 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH--------HTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--------HhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHH
Confidence 57899999999999999999999987 233334333221110000 011222222211111111
Q ss_pred ccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcc-cChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHH
Q 008954 268 TFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRT-YDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIA 346 (547)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~-~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~ 346 (547)
.+.+...... .-..+.++||+|............ .....++++++..|+.+++++|+.. ..+..+.+.
T Consensus 173 v~~~v~~~~~--------~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t---~~~~~~~~~ 241 (304)
T 1rj9_A 173 AYDAVQAMKA--------RGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT---GQNGLEQAK 241 (304)
T ss_dssp HHHHHHHHHH--------HTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB---CTHHHHHHH
T ss_pred HHHHHHHHHh--------CCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH---HHHHHHHHH
Confidence 1111100000 012467899999875321111110 0123356677789999999999864 234455555
Q ss_pred HHhCCCCeEEEEeccCCCcC
Q 008954 347 SLRGNDDKIRVVLNKADQVD 366 (547)
Q Consensus 347 ~l~~~~~~iivVlNK~D~~~ 366 (547)
.+.+.....++++||.|...
T Consensus 242 ~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 242 KFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHHHHHCCSEEEEECTTSSC
T ss_pred HHHHHcCCcEEEEECCcccc
Confidence 55433123467889998763
No 277
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=98.64 E-value=7.2e-08 Score=72.60 Aligned_cols=61 Identities=15% Similarity=0.298 Sum_probs=55.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 18 IYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 18 ~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.++.+|..+|.+++|+|+.+++..++... .++..++..++..+|.+++|.|+++||..++.
T Consensus 2 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~ 64 (67)
T 1tiz_A 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIE 64 (67)
T ss_dssp THHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 47889999999999999999999999984 56889999999999999999999999998764
No 278
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.64 E-value=1.5e-08 Score=110.45 Aligned_cols=157 Identities=20% Similarity=0.289 Sum_probs=89.8
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~ 260 (547)
+.+++.+++ +|..++++|++|+|||||++.|+|.. .|+.+.+.+ +|.+... ....+.+.|..
T Consensus 355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~--------~p~~G~i~~--~g~~~~~~~~~~~r~~i~~v~Q~~ 424 (578)
T 4a82_A 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY--------DVTSGQILI--DGHNIKDFLTGSLRNQIGLVQQDN 424 (578)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS--------CCSEEEEEE--TTEEGGGSCHHHHHHTEEEECSSC
T ss_pred cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC--------CCCCcEEEE--CCEEhhhCCHHHHhhheEEEeCCC
Confidence 355665544 89999999999999999999999987 455555443 3322111 12345566776
Q ss_pred CCCCCccccccchhhhh-----hhh-----cccccccccc-----eEEcC-CCCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 261 LPFSGLTTFGGAFLSKF-----ECS-----QMSHPLLDQV-----TFVDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~-----~~~-----~~~~~ll~~l-----~lvDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
..|.+ +..+|...... +.. ...++.+..+ +.++. +.-.|+ ++||+. ++|+++.+|
T Consensus 425 ~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~-------lAral~~~p 496 (578)
T 4a82_A 425 ILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS-------IARIFLNNP 496 (578)
T ss_dssp CCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHH-------HHHHHHHCC
T ss_pred ccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHH-------HHHHHHcCC
Confidence 66655 55555422110 000 0000100000 11221 223444 677765 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCC
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~ 364 (547)
+++|+| +.+.|+.......+.++.+.+ +..+++|-+..+.
T Consensus 497 ~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~ 538 (578)
T 4a82_A 497 PILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLST 538 (578)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH
Confidence 999999 444442223344455555543 5778887776554
No 279
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=98.64 E-value=1.2e-07 Score=77.29 Aligned_cols=64 Identities=28% Similarity=0.469 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..+.++.+|..+|.|++|+|+.+|+..+++. ..++.+++..++..+|.+++|.|+|+||+.++.
T Consensus 27 ~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~ 92 (94)
T 2kz2_A 27 SEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 92 (94)
T ss_dssp CHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 3567999999999999999999999999998 457899999999999999999999999988763
No 280
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=98.63 E-value=1.1e-07 Score=78.40 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhhCCCC---CCcccHHHHHHHHhh-C--CCC----HHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIADSDG---DGRITGNDATKFLGL-S--KLS----RQELKQIWALADSKRQGFLDLAEFVTAMKLVSL 82 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D~~~---~G~Is~~e~~~~l~~-~--~l~----~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~ 82 (547)
....+.++++|..||.++ +|+|+.+|++.+++. . .++ ..++.++++.+|.|++|.|+|+||+.+|.-+..
T Consensus 7 e~~i~~l~~~F~~fD~~~g~~~G~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~m~~~~~ 86 (100)
T 3nxa_A 7 EKAVIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGGITG 86 (100)
T ss_dssp HHHHHHHHHHHHHTSCTTCSCTTCBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCCBCHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHcCcCCCCCCeEcHHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 345789999999999963 799999999999986 2 233 578999999999999999999999998875554
Q ss_pred Hh
Q 008954 83 AQ 84 (547)
Q Consensus 83 ~q 84 (547)
+.
T Consensus 87 ~~ 88 (100)
T 3nxa_A 87 PI 88 (100)
T ss_dssp GG
T ss_pred HH
Confidence 33
No 281
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=98.63 E-value=1.1e-08 Score=80.99 Aligned_cols=68 Identities=24% Similarity=0.362 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCC----CCHHHHHH----HHHHHCCCCCCccCHHHHHHHHHH
Q 008954 12 SKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSK----LSRQELKQ----IWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 12 s~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~----l~~~~l~~----i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
++++.+.++.+|..+|.|++|+|+.+|+..++...+ ++.+++.. ++..+|.+++|.|+++||+..+..
T Consensus 2 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~~~~ 77 (83)
T 1yx7_A 2 ACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAE 77 (83)
T ss_dssp CSCSCTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHhhHH
Confidence 455567899999999999999999999999998844 66777888 999999999999999999976653
No 282
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=98.63 E-value=1.2e-07 Score=76.79 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHhh-------CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIAD-SDGDG-RITGNDATKFLGL-------SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLA 83 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~~-------~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~ 83 (547)
+++.+.++.+|..+| .+++| +|+.+|+..+++. ..++..++..++..+|.+++|.|+++||+.++.-+..+
T Consensus 5 ~~~~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~~ 84 (93)
T 1k2h_A 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (93)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 345788999999999 79999 9999999999986 35788999999999999999999999999988766666
Q ss_pred hcC
Q 008954 84 QAG 86 (547)
Q Consensus 84 q~g 86 (547)
++.
T Consensus 85 ~~~ 87 (93)
T 1k2h_A 85 CNN 87 (93)
T ss_dssp TCC
T ss_pred HHH
Confidence 553
No 283
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.61 E-value=4.1e-08 Score=107.43 Aligned_cols=153 Identities=16% Similarity=0.225 Sum_probs=87.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHADL 261 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~~ 261 (547)
.+++.+++ +|..++|+|++|+|||||++.|+|.. .|+.+.+.+ +|.+... ....+.+.|...
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--------~p~~G~i~~--~g~~i~~~~~~~~~~~i~~v~Q~~~ 428 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY--------DPASGTISL--DGHDIRQLNPVWLRSKIGTVSQEPI 428 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS--------CCSEEEEEE--TTEETTTBCHHHHHHSEEEECSSCC
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--------CCCCcEEEE--CCEEhhhCCHHHHHhceEEEccCCc
Confidence 45555544 89999999999999999999999987 345555443 3322111 123445666655
Q ss_pred CCCCccccccchhhhhh----hhcccccccccceE----------EcC-----CCCCCh-hhhhhhcccChHHHHHHHhh
Q 008954 262 PFSGLTTFGGAFLSKFE----CSQMSHPLLDQVTF----------VDT-----PGVLSG-EKQRTQRTYDFTGVISWFAA 321 (547)
Q Consensus 262 ~~~~l~~~~~~~~~~~~----~~~~~~~ll~~l~l----------vDT-----PG~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (547)
.|.+ +..+|..+.... ........++.+.+ .|| ++-.|+ ++||+. ++++++.
T Consensus 429 l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~-------iAral~~ 500 (595)
T 2yl4_A 429 LFSC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIA-------IARALLK 500 (595)
T ss_dssp CCSS-BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHH-------HHHHHHH
T ss_pred ccCC-CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHH-------HHHHHHc
Confidence 5543 544444221100 00000111111111 233 234454 677765 8999999
Q ss_pred cCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 322 KCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 322 ~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+|+++|++ +.+.|........+.++.+.+ +..+++|-+.
T Consensus 501 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~ 541 (595)
T 2yl4_A 501 NPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHR 541 (595)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCC
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 99999999 444443333445566666655 6677777664
No 284
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=98.61 E-value=1.1e-07 Score=79.33 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 8 ITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 8 ~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
...+ +++.+.++.+|..+|.|++|+|+.+++..++... .++..++..++..+|.+++|.|+|+||+.++
T Consensus 24 ~~~l-~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~i~~~eF~~~~ 94 (107)
T 2d58_A 24 DEDL-PSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMM 94 (107)
T ss_dssp CTTH-HHHHHHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSEECHHHHHHHH
T ss_pred HHhh-HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 3456 7889999999999999999999999999999984 4688999999999999999999999998766
No 285
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.61 E-value=2.9e-08 Score=104.30 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=76.9
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc-----------cCCceeeecCCCCCC
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT-----------IPGNTIAVHADLPFS 264 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~-----------~~g~~~~~~~~~~~~ 264 (547)
+..|.+|+|+|++|||||||++.|+|.. .+..+++.+. .++..+. ..+..+..+....+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll--------~~~~G~V~l~-g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF--------EQQGKSVMLA-AGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH--------HHTTCCEEEE-CCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh--------hhcCCeEEEe-cCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 3478899999999999999999999976 2333444332 1111110 112222222211111
Q ss_pred CccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHH-hhcCCeEEEEecCCCCCCCHHHHH
Q 008954 265 GLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWF-AAKCDLILLLFDPHKLDISDEFKR 343 (547)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~-~~~aD~illv~d~~~~~~~~~~~~ 343 (547)
..+.+.+...... --..+.|+||+|............-.+..+++.+ ...++-+++++|+.. + .....
T Consensus 361 ~~tV~e~l~~a~~--------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt-G--q~al~ 429 (503)
T 2yhs_A 361 ASVIFDAIQAAKA--------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST-G--QNAVS 429 (503)
T ss_dssp HHHHHHHHHHHHH--------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG-T--HHHHH
T ss_pred HHHHHHHHHHHHh--------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc-c--HHHHH
Confidence 1111111111100 1135889999999754222222111112222222 234778899999864 2 33344
Q ss_pred HHHHHhCCCCeEEEEeccCCCcC
Q 008954 344 VIASLRGNDDKIRVVLNKADQVD 366 (547)
Q Consensus 344 ll~~l~~~~~~iivVlNK~D~~~ 366 (547)
.++.+...-....+|+||+|...
T Consensus 430 ~ak~f~~~~~itgvIlTKLD~ta 452 (503)
T 2yhs_A 430 QAKLFHEAVGLTGITLTKLDGTA 452 (503)
T ss_dssp HHHHHHHHTCCSEEEEECGGGCS
T ss_pred HHHHHHhhcCCCEEEEEcCCCcc
Confidence 55555432123357899999753
No 286
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.61 E-value=7.4e-08 Score=105.14 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=89.6
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcccc------CCceeeecCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTI------PGNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~------~g~~~~~~~~ 260 (547)
+.+++.+++ .|..++|+|++|+|||||++.|+|.. .|+.+.+.+ +|.+.... ...+.+.|..
T Consensus 357 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~--------~~~~G~i~i--~g~~i~~~~~~~~r~~i~~v~Q~~ 426 (587)
T 3qf4_A 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI--------DPERGRVEV--DELDVRTVKLKDLRGHISAVPQET 426 (587)
T ss_dssp CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS--------CCSEEEEEE--SSSBGGGBCHHHHHHHEEEECSSC
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--------cCCCcEEEE--CCEEcccCCHHHHHhheEEECCCC
Confidence 355665544 89999999999999999999999987 355555443 34332221 1244466666
Q ss_pred CCCCCccccccchhhh-------hh-h--hcccccccc----c-ceEEcC-CCCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 261 LPFSGLTTFGGAFLSK-------FE-C--SQMSHPLLD----Q-VTFVDT-PGVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~-------~~-~--~~~~~~ll~----~-l~lvDT-PG~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
..|.+ +..+|..... .. . ....++.+. . =+.++. +.-.|+ ++||+. ++|+++.+|
T Consensus 427 ~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~-------lARal~~~p 498 (587)
T 3qf4_A 427 VLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLS-------IARALVKKP 498 (587)
T ss_dssp CCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHH-------HHHHHHTCC
T ss_pred cCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHH-------HHHHHHcCC
Confidence 66654 4444432110 00 0 000011110 1 123343 334554 677765 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
+++|++ +.+.|........+.++.+. .+..+++|-+..
T Consensus 499 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l 538 (587)
T 3qf4_A 499 KVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKI 538 (587)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCh
Confidence 999999 44444323334455555554 367788877653
No 287
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.59 E-value=4.2e-08 Score=105.56 Aligned_cols=144 Identities=15% Similarity=0.069 Sum_probs=79.7
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchh
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFL 274 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 274 (547)
.+..|.+++|+|++|+|||||+++|+|... |+.+.+.+ .+ .+.....+........+...+...
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--------p~~G~i~~--~~------~~i~~~~q~~~~~~~~tv~~~l~~ 353 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEIT--------ADEGSVTP--EK------QILSYKPQRIFPNYDGTVQQYLEN 353 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSC--------CSBCCEES--SC------CCEEEECSSCCCCCSSBHHHHHHH
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCC--------CCCcEEEE--CC------eeeEeechhcccccCCCHHHHHHH
Confidence 356899999999999999999999999882 33333321 00 011112222111111122221110
Q ss_pred h--hh--hhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHH
Q 008954 275 S--KF--ECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKR 343 (547)
Q Consensus 275 ~--~~--~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ 343 (547)
. .. ........+++.+.+-+ .|+-+|+ ++|++. ++++++.+++++|++ +.+.++....+..+
T Consensus 354 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~-------iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ 426 (538)
T 3ozx_A 354 ASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLY-------IAATLAKEADLYVLDQPSSYLDVEERYIVAK 426 (538)
T ss_dssp HCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHH-------HHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred hhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH-------HHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 0 00 00011123334443333 3566665 667655 899999999999999 44444333455667
Q ss_pred HHHHHhC-CCCeEEEEecc
Q 008954 344 VIASLRG-NDDKIRVVLNK 361 (547)
Q Consensus 344 ll~~l~~-~~~~iivVlNK 361 (547)
+++.+.. .+..+++|.+-
T Consensus 427 ~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 427 AIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp HHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHhCCCEEEEEeCC
Confidence 7777653 46777777553
No 288
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.59 E-value=4.1e-08 Score=107.50 Aligned_cols=156 Identities=19% Similarity=0.259 Sum_probs=89.1
Q ss_pred cccCCCCC--CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcccc------CCceeeecCC
Q 008954 189 PFLTNSDF--DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTI------PGNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~--~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~------~g~~~~~~~~ 260 (547)
+.+++.++ .+|..++|+|++|+|||||++.|+|.. .|+.+.+.+ +|.+.... ...+.+.|..
T Consensus 369 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~--------~p~~G~i~~--~g~~i~~~~~~~~r~~i~~v~Q~~ 438 (598)
T 3qf4_B 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY--------DVDRGQILV--DGIDIRKIKRSSLRSSIGIVLQDT 438 (598)
T ss_dssp CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS--------CCSEEEEEE--TTEEGGGSCHHHHHHHEEEECTTC
T ss_pred ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc--------CCCCeEEEE--CCEEhhhCCHHHHHhceEEEeCCC
Confidence 35666554 489999999999999999999999988 455555443 33222111 1344566666
Q ss_pred CCCCCccccccchhhhhhh-hcccccccccceE---Ec-CC-----------CCCC-hhhhhhhcccChHHHHHHHhhcC
Q 008954 261 LPFSGLTTFGGAFLSKFEC-SQMSHPLLDQVTF---VD-TP-----------GVLS-GEKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~~~-~~~~~~ll~~l~l---vD-TP-----------G~~~-~~~~~~~~~~~~~~~~~~~~~~a 323 (547)
..|.+ +..+|........ .......++...+ ++ .| .-.| |++||+. ++++++.+|
T Consensus 439 ~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~-------iAral~~~p 510 (598)
T 3qf4_B 439 ILFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA-------ITRAFLANP 510 (598)
T ss_dssp CCCSS-BHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHH-------HHHHHHTCC
T ss_pred ccccc-cHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHH-------HHHHHhcCC
Confidence 55544 4444432211000 0000011111111 11 12 2344 3677665 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+++|+| +.+.|........+.+..+. .+..+++|-+..+
T Consensus 511 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~ 551 (598)
T 3qf4_B 511 KILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN 551 (598)
T ss_dssp SEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH
Confidence 999998 44444323344555666664 3678888877654
No 289
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A
Probab=98.59 E-value=7.1e-08 Score=78.38 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhCC-CCCC-cccHHHHHHHH-hhCC--CCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhc
Q 008954 13 KEHQKIYREWFDIADS-DGDG-RITGNDATKFL-GLSK--LSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQA 85 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D~-~~~G-~Is~~e~~~~l-~~~~--l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~ 85 (547)
.++.+.++.+|..+|. |++| +|+.+|+..++ +..+ ++..++..+++.+|.+++|.|+|+||+.++.-+..+++
T Consensus 6 ~~~~~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~~~~ 83 (93)
T 1xk4_A 6 EKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAH 83 (93)
T ss_dssp HHHHHHHHHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcCeECHHHHHHHHHHHCcccCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3456789999999999 9999 99999999999 5544 34467899999999999999999999998876655554
No 290
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.59 E-value=3.1e-08 Score=108.05 Aligned_cols=142 Identities=20% Similarity=0.145 Sum_probs=80.4
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhh
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 275 (547)
+..|.+++|+|+||+|||||++.|+|... + +.+.+.+ ....+.+++.......++...+....
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p-----~~G~I~~---------~~~i~~v~Q~~~~~~~~tv~e~~~~~ 441 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEE---P-----TEGKVEW---------DLTVAYKPQYIKAEYEGTVYELLSKI 441 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSC---C-----SBSCCCC---------CCCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCC---C-----CceEEEE---------eeEEEEEecCccCCCCCcHHHHHHhh
Confidence 45899999999999999999999999873 2 2222211 01122333332222223332222111
Q ss_pred ---hhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHH
Q 008954 276 ---KFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVI 345 (547)
Q Consensus 276 ---~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll 345 (547)
..........++..+.+-+ .|+-+|+ ++|++. ++++++.+++++|++ +.+.++.......+++
T Consensus 442 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~-------iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l 514 (607)
T 3bk7_A 442 DSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVA-------IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 514 (607)
T ss_dssp HHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHH-------HHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 1111112233444444322 2455555 666655 899999999999999 4444433344566777
Q ss_pred HHHh-CCCCeEEEEecc
Q 008954 346 ASLR-GNDDKIRVVLNK 361 (547)
Q Consensus 346 ~~l~-~~~~~iivVlNK 361 (547)
+.+. +.+..+++|.+-
T Consensus 515 ~~l~~~~g~tvi~vsHd 531 (607)
T 3bk7_A 515 RHLMEKNEKTALVVEHD 531 (607)
T ss_dssp HHHHHHTTCEEEEECSC
T ss_pred HHHHHhCCCEEEEEeCC
Confidence 7764 356777777553
No 291
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*
Probab=98.58 E-value=2e-07 Score=78.73 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHh-hCC-------CCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIAD-SDGDG-RITGNDATKFLG-LSK-------LSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSL 82 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~-~~~-------l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~ 82 (547)
+++.+.++++|..+| +|++| +|+.+|++.+|+ ..+ ++..++..++..+|.+++|.|+|+||+.++.-+..
T Consensus 8 ~~~~~~l~~~F~~fD~~dgdG~~Is~~El~~~l~~~lg~~~~~~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~ 87 (113)
T 1xk4_C 8 ERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLTW 87 (113)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhhcccccCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHHHHH
Confidence 445789999999999 49999 999999999998 433 46889999999999999999999999988865554
Q ss_pred Hhc
Q 008954 83 AQA 85 (547)
Q Consensus 83 ~q~ 85 (547)
+++
T Consensus 88 ~~~ 90 (113)
T 1xk4_C 88 ASH 90 (113)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 292
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=98.58 E-value=6.3e-08 Score=73.91 Aligned_cols=62 Identities=26% Similarity=0.370 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
.+.++.+|..+|.+++|+|+.+++..++... .++..++..++..+|.+++|.|+++||+.++
T Consensus 5 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 68 (71)
T 2b1u_A 5 LEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 68 (71)
T ss_dssp HHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHCCSSSSSEEETTHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4678999999999999999999999999984 4788999999999999999999999998765
No 293
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.58 E-value=3e-08 Score=97.99 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=25.6
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCccccee
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRF 238 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~ 238 (547)
.+..|+++|.||+|||||||+|+|... +.+++.|.||+.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~--~~~~~~~g~T~~ 157 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI--AKTGDRPGITTS 157 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC--C-----------
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce--eecCCCCCeeee
Confidence 456899999999999999999999987 788888877653
No 294
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=98.58 E-value=5e-08 Score=76.80 Aligned_cols=65 Identities=26% Similarity=0.465 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCC---CCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIADSDGDGRITGNDATKFLGLSK---LSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~---l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
++..+.++ +|..+|.|++|+|+.+++..++...+ ++..++..++..+|.+++|.|+++||+.++.
T Consensus 5 ~~~~~~l~-~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 72 (81)
T 1c7v_A 5 DDEEEILR-AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIK 72 (81)
T ss_dssp --CHHHHH-HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHHHHH
T ss_pred ccHHHHHH-HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 34467889 99999999999999999999999866 6789999999999999999999999998764
No 295
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.56 E-value=5e-08 Score=105.19 Aligned_cols=142 Identities=20% Similarity=0.144 Sum_probs=80.7
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhh
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 275 (547)
+..|.+++|+|++|+|||||++.|+|... +. .+.+.+ ....+.+.+........+........
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~-----~G~i~~---------~~~i~~v~Q~~~~~~~~tv~~~~~~~ 371 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PT-----EGKIEW---------DLTVAYKPQYIKADYEGTVYELLSKI 371 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSC---CS-----BCCCCC---------CCCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCC---CC-----CeEEEE---------CceEEEEecCCcCCCCCcHHHHHHhh
Confidence 35899999999999999999999999873 22 222211 01122233332222222222221110
Q ss_pred ---hhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHH
Q 008954 276 ---KFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVI 345 (547)
Q Consensus 276 ---~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll 345 (547)
..........++..+.+-+ .|+-+|+ ++|++. ++++++.+++++|++ +.+.++....++.+++
T Consensus 372 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~-------lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l 444 (538)
T 1yqt_A 372 DASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVA-------IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 444 (538)
T ss_dssp HHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHH-------HHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0011112234455554433 3455665 666654 899999999999999 4444433445566777
Q ss_pred HHHh-CCCCeEEEEecc
Q 008954 346 ASLR-GNDDKIRVVLNK 361 (547)
Q Consensus 346 ~~l~-~~~~~iivVlNK 361 (547)
+.+. +.+..+++|.+-
T Consensus 445 ~~l~~~~g~tvi~vsHd 461 (538)
T 1yqt_A 445 RHLMEKNEKTALVVEHD 461 (538)
T ss_dssp HHHHHHHTCEEEEECSC
T ss_pred HHHHHhCCCEEEEEeCC
Confidence 7664 346777777553
No 296
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A
Probab=98.56 E-value=2e-07 Score=76.34 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHhh-------CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHh
Q 008954 14 EHQKIYREWFDIAD-SDGDG-RITGNDATKFLGL-------SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQ 84 (547)
Q Consensus 14 ee~~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~~-------~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q 84 (547)
+..+.++.+|..+| .+++| +|+.+|+..++.. ..++..++..++..+|.+++|.|+++||..++..+..++
T Consensus 10 ~~~~~l~~~F~~~Dd~d~~G~~I~~~el~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~~~dg~I~~~EF~~~~~~~~~~~ 89 (99)
T 1qls_A 10 RCIESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGLAIAC 89 (99)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcCeeCHHHHHHHHHHHcchhccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 34668999999998 99999 9999999999984 247888999999999999999999999998876555444
Q ss_pred c
Q 008954 85 A 85 (547)
Q Consensus 85 ~ 85 (547)
|
T Consensus 90 ~ 90 (99)
T 1qls_A 90 H 90 (99)
T ss_dssp H
T ss_pred H
Confidence 3
No 297
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.54 E-value=4.1e-08 Score=95.90 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=79.4
Q ss_pred CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCc---cccCCce-eeecCCCCCCCccccc
Q 008954 195 DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDE---RTIPGNT-IAVHADLPFSGLTTFG 270 (547)
Q Consensus 195 ~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~---~~~~g~~-~~~~~~~~~~~l~~~~ 270 (547)
.+. |.+++|+|++|+|||||++.|+|.. | +.+.+.+ ++... ....... .+++... + .++..+
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--------~~G~I~~--~g~~~~~~~~~~~i~~~v~Q~~~-l-~~tv~e 92 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL-P--------YSGNIFI--NGMEVRKIRNYIRYSTNLPEAYE-I-GVTVND 92 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--------CEEEEEE--TTEEGGGCSCCTTEEECCGGGSC-T-TSBHHH
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--------CCcEEEE--CCEECcchHHhhheEEEeCCCCc-c-CCcHHH
Confidence 456 8999999999999999999999975 3 2333222 22110 0122334 4444332 2 444444
Q ss_pred cchhh-hhh--hhcccccccccceEE----c-CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCH
Q 008954 271 GAFLS-KFE--CSQMSHPLLDQVTFV----D-TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISD 339 (547)
Q Consensus 271 ~~~~~-~~~--~~~~~~~ll~~l~lv----D-TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~ 339 (547)
+.... ... .......+++.+.+- | .|+-+|+ ++|++. ++++++.+|+++|++ +.+.++....
T Consensus 93 nl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~-------lAraL~~~p~lllLDEPts~LD~~~~~ 165 (263)
T 2pjz_A 93 IVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVR-------TSLALASQPEIVGLDEPFENVDAARRH 165 (263)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHH-------HHHHHHTCCSEEEEECTTTTCCHHHHH
T ss_pred HHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEECCccccCHHHHH
Confidence 44221 100 001112333333333 2 2445554 666654 899999999999999 4444432233
Q ss_pred HHHHHHHHHhCCCCeEEEEeccCCC
Q 008954 340 EFKRVIASLRGNDDKIRVVLNKADQ 364 (547)
Q Consensus 340 ~~~~ll~~l~~~~~~iivVlNK~D~ 364 (547)
...++++.+.+ .++++-+..+.
T Consensus 166 ~l~~~L~~~~~---tviivtHd~~~ 187 (263)
T 2pjz_A 166 VISRYIKEYGK---EGILVTHELDM 187 (263)
T ss_dssp HHHHHHHHSCS---EEEEEESCGGG
T ss_pred HHHHHHHHhcC---cEEEEEcCHHH
Confidence 44445544432 77777666544
No 298
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=98.54 E-value=5.1e-08 Score=73.33 Aligned_cols=60 Identities=23% Similarity=0.349 Sum_probs=53.7
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 19 YREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 19 ~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
++.+|..+|.|++|+|+.+|+..+++.. .++.+++..+|..+|.+++|.|+++||..++.
T Consensus 2 l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~ 63 (66)
T 3li6_A 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63 (66)
T ss_dssp CCHHHHHHCTTCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 4578999999999999999999999883 45678899999999999999999999998763
No 299
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.52 E-value=2.6e-08 Score=98.67 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=29.5
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCN 223 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~ 223 (547)
.+.+.+|. .|.+++|+|++|+|||||++.|+|..
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45555544 89999999999999999999999987
No 300
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=98.51 E-value=1.8e-07 Score=82.74 Aligned_cols=61 Identities=30% Similarity=0.424 Sum_probs=56.7
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
+.++.+|+.+|.|++|+|+.+|++.++.. ..++..++..++..+|.|++|.|+|+||+.+|
T Consensus 83 ~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~m 145 (148)
T 2lmt_A 83 EEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMI 145 (148)
T ss_dssp HHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSCCSSEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 46889999999999999999999999988 56789999999999999999999999999766
No 301
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=98.51 E-value=2.6e-07 Score=72.02 Aligned_cols=62 Identities=27% Similarity=0.449 Sum_probs=56.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC-CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS-KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.++.+|..+|.+++|+|+.+++..+++.. .++.+++..++..+|.+++|.|+++||..++.
T Consensus 3 ~~l~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~ 65 (78)
T 1k9u_A 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFCN 65 (78)
T ss_dssp CHHHHHHHHHCTTCSSEECHHHHHHHHHHHHTCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 468899999999999999999999999874 57889999999999999999999999998764
No 302
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=98.51 E-value=2.6e-08 Score=79.57 Aligned_cols=67 Identities=30% Similarity=0.406 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTA 76 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~ 76 (547)
.+++++.+.++.+|..+|.+++|+|+.+++..+++.. .++.+++..++..+|.+++|.|+++||+.+
T Consensus 16 ~l~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~ 84 (87)
T 1s6j_A 16 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 84 (87)
T ss_dssp SSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSSEECHHHHTTC
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 4566667789999999999999999999999999984 568899999999999999999999999754
No 303
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=98.50 E-value=1.8e-07 Score=75.00 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHhh---CC--CCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhc
Q 008954 14 EHQKIYREWFDIAD-SDGDG-RITGNDATKFLGL---SK--LSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQA 85 (547)
Q Consensus 14 ee~~~~~~~F~~~D-~~~~G-~Is~~e~~~~l~~---~~--l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~ 85 (547)
++.+.++.+|..+| .+++| +|+.+|+..+++. .+ ++..++..++..+|.+++|.|+++||..++.-+..+.+
T Consensus 7 ~~~~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~~~~~ 85 (90)
T 1k8u_A 7 QAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALIYN 85 (90)
T ss_dssp HHHHHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 34678999999999 59999 9999999999986 44 67789999999999999999999999998876655544
No 304
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=98.50 E-value=2.8e-07 Score=94.31 Aligned_cols=70 Identities=26% Similarity=0.416 Sum_probs=65.1
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 8 ITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 8 ~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
...++++|.++++++|+.+|.|++|+|+.+|+..+|+.. .++.+++.++++.+|.|++|.|+|+||+.++
T Consensus 293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~~~D~DgDG~IdFeEFl~lm 364 (440)
T 3u0k_A 293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLIMM 364 (440)
T ss_dssp CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCSSSEEHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 357899999999999999999999999999999999984 5688999999999999999999999998765
No 305
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=98.50 E-value=4.9e-07 Score=80.43 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 6 SPITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 6 ~~~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
.....+++++.+.++.+|..+|.+++|+|+.+++..++... .++..++..+|..+|.+++|.|+++||..++..
T Consensus 12 ~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 87 (161)
T 3fwb_A 12 PLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGE 87 (161)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSCEEHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCeEeHHHHHHHHHH
Confidence 34567999999999999999999999999999999999984 568899999999999999999999999887753
No 306
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=98.49 E-value=4.4e-07 Score=80.63 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=66.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhC-CCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 7 PITFCSKEHQKIYREWFDIAD-SDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 7 ~~~~ls~ee~~~~~~~F~~~D-~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
+...+++++...++.+|..+| .+++|+|+.+++..+++.. .++..++..++..+|.+++|.|+++||..++..
T Consensus 3 ~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~ 78 (158)
T 2jnf_A 3 DVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGAR 78 (158)
T ss_dssp CSTTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSCSHHHHHHHHHHHCTTCCSEECHHHHHHHHHH
T ss_pred chhhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 345799999999999999999 9999999999999999984 567889999999999999999999999987753
No 307
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=98.49 E-value=2e-07 Score=77.81 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhhC-CCCC-CcccHHHHHHHHhh-CC--CC-HHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIAD-SDGD-GRITGNDATKFLGL-SK--LS-RQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D-~~~~-G~Is~~e~~~~l~~-~~--l~-~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
+++.+.++++|..|| .|++ |+|+.+|++.+|+. .+ .+ ..++.+++..+|.|++|.|+|+||+.++.-.
T Consensus 18 e~~~~~l~~aF~~fD~~dg~~G~Is~~EL~~~l~~~lg~~~~~~~ev~~li~~~D~d~dG~Idf~EF~~~~~~~ 91 (106)
T 2h2k_A 18 EESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGEL 91 (106)
T ss_dssp HHHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcCcCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHH
Confidence 345679999999999 7987 79999999999986 43 33 3689999999999999999999999887543
No 308
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=98.49 E-value=4.4e-07 Score=79.97 Aligned_cols=69 Identities=26% Similarity=0.446 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+++++.+.++.+|..+|.+++|+|+.+|+..+++. ..++..++..++..+|.+++|.|+++||..++.
T Consensus 3 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 73 (148)
T 1exr_A 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMA 73 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 589999999999999999999999999999999988 456788999999999999999999999998764
No 309
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=98.48 E-value=1.5e-07 Score=83.27 Aligned_cols=70 Identities=21% Similarity=0.381 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..||++|.+.++++|..+|.|++|+|+.+|+..+++. ..++..++..++..+|.+++|.+++.||...+.
T Consensus 2 s~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (148)
T 2lmt_A 2 SELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMA 73 (148)
T ss_dssp CSCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCCHHHHHHHHHHHHTTSTTEEEHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCchHHHHHHHHHhcccCCCCcccHHHHHHHHH
Confidence 4699999999999999999999999999999999988 467889999999999999999999999987663
No 310
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=98.48 E-value=2.4e-07 Score=81.33 Aligned_cols=67 Identities=25% Similarity=0.459 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 12 SKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 12 s~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
|+++.+.++++|..+|.|++|+|+.+|+..+++.. .++..++..++..+|.+++|.|+|+||+.++.
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 69 (143)
T 2obh_A 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMT 69 (143)
T ss_dssp CHHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeeeHHHHHHHHH
Confidence 57889999999999999999999999999999984 46788999999999999999999999998764
No 311
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Probab=98.47 E-value=1.2e-07 Score=78.30 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC---------CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIADSDGDGRITGNDATKFLGLS---------KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLA 83 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~---------~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~ 83 (547)
+++.+.++++|+.+|.+ +|+|+.+|++.+++.. .++..++.++++.+|.|++|.|+|+||+.+|.-....
T Consensus 6 ~~~~~~l~~~F~~fD~~-~g~Is~~El~~~l~~~~~~~lg~~~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~ 84 (100)
T 1psr_A 6 ERSIIGMIDMFHKYTRR-DDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDIATD 84 (100)
T ss_dssp HHHHHHHHHHHHHTCCT-TSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCeECHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 45678999999999976 7999999999999861 3566788999999999999999999999988766655
Q ss_pred hcC
Q 008954 84 QAG 86 (547)
Q Consensus 84 q~g 86 (547)
+|+
T Consensus 85 ~~~ 87 (100)
T 1psr_A 85 YHK 87 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 312
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=98.47 E-value=5.2e-07 Score=81.12 Aligned_cols=72 Identities=26% Similarity=0.414 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 8 ITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 8 ~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
...+++++.+.++.+|..+|.|++|+|+.+|+..++... .++..++..++..+|.+++|.|+++||..++..
T Consensus 19 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 92 (169)
T 3qrx_A 19 RVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTA 92 (169)
T ss_dssp -CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999984 467899999999999999999999999988754
No 313
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=98.46 E-value=2.3e-07 Score=71.70 Aligned_cols=63 Identities=19% Similarity=0.354 Sum_probs=57.1
Q ss_pred HHHHHHHHhhh-CCCCC-CcccHHHHHHHHhh--CCC--CHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIA-DSDGD-GRITGNDATKFLGL--SKL--SRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~-D~~~~-G~Is~~e~~~~l~~--~~l--~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.++.+|..+ |.+++ |+|+.+++..++.. ..+ +.+++..++..+|.+++|.|+++||+.++.
T Consensus 4 ~~~l~~~F~~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~ 72 (76)
T 1qx2_A 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMK 72 (76)
T ss_dssp HHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcCeECHHHHHHHHHHhCCCcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 45789999999 99999 99999999999988 356 778899999999999999999999998775
No 314
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=98.45 E-value=3.6e-07 Score=75.69 Aligned_cols=64 Identities=14% Similarity=0.296 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
....++.+|..+|.+++|+|+..++..++.. ..++..++..+|..+|.+++|.|+|+||+.++.
T Consensus 22 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~~~ 87 (105)
T 1wlz_A 22 HYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFS 87 (105)
T ss_dssp THHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHHC
T ss_pred hHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCCCcHHHHHHHHh
Confidence 3567899999999999999999999999988 467899999999999999999999999998764
No 315
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=98.45 E-value=5.4e-07 Score=80.22 Aligned_cols=74 Identities=22% Similarity=0.360 Sum_probs=67.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCC-CCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 7 PITFCSKEHQKIYREWFDIADSDG-DGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 7 ~~~~ls~ee~~~~~~~F~~~D~~~-~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
....+++++.+.++.+|..+|.++ +|.|+.+|+..++... .++..++..+|..+|.+++|.|+++||..++...
T Consensus 8 ~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~eF~~~~~~~ 84 (161)
T 1dtl_A 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRS 84 (161)
T ss_dssp GGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH
Confidence 345689999999999999999999 9999999999999984 4788999999999999999999999999887654
No 316
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.45 E-value=1.3e-07 Score=102.15 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=23.2
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCC
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNY 224 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~ 224 (547)
.+|+|+|+||+|||||||+|+|...
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCC
Confidence 5699999999999999999999874
No 317
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.1e-07 Score=103.48 Aligned_cols=142 Identities=20% Similarity=0.163 Sum_probs=76.4
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhh
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLS 275 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 275 (547)
+..|.+++|+|++|+|||||++.|+|... +.+...... .+.....+........+..++.+..
T Consensus 375 ~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~~--------------~~i~~~~q~~~~~~~~tv~e~~~~~ 437 (608)
T 3j16_B 375 FSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIPK--------------LNVSMKPQKIAPKFPGTVRQLFFKK 437 (608)
T ss_dssp CCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCCS--------------CCEEEECSSCCCCCCSBHHHHHHHH
T ss_pred cccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCccC--------------CcEEEecccccccCCccHHHHHHHH
Confidence 33458899999999999999999999883 332221100 0111222221111111111111000
Q ss_pred ---hhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHH
Q 008954 276 ---KFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVI 345 (547)
Q Consensus 276 ---~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll 345 (547)
..........+++.+.+-+ .|+-+|+ ++|++. ++++++.+++++|++ +.+.++....+..+++
T Consensus 438 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~-------iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll 510 (608)
T 3j16_B 438 IRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVA-------IVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510 (608)
T ss_dssp CSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHH-------HHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-------HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 0000011122333333322 4667776 667655 899999999999999 3344433334566777
Q ss_pred HHHh-CCCCeEEEEecc
Q 008954 346 ASLR-GNDDKIRVVLNK 361 (547)
Q Consensus 346 ~~l~-~~~~~iivVlNK 361 (547)
+.+. +.+..+++|.+-
T Consensus 511 ~~l~~~~g~tviivtHd 527 (608)
T 3j16_B 511 RRFILHNKKTAFIVEHD 527 (608)
T ss_dssp HHHHHHHTCEEEEECSC
T ss_pred HHHHHhCCCEEEEEeCC
Confidence 7764 447777777554
No 318
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=98.45 E-value=2.6e-07 Score=75.64 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh-C------CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHh
Q 008954 13 KEHQKIYREWFDIADSDGDGRITGNDATKFLGL-S------KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQ 84 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~-~------~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q 84 (547)
+++.+.++++|..+|. ++|+|+.+|++.+++. . .++..++..++..+|.|++|.|+|+||+.++.-...++
T Consensus 5 ~~~~~~l~~~F~~fD~-~dg~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~~ 82 (96)
T 1a4p_A 5 EHAMETMMFTFHKFAG-DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLTIAC 82 (96)
T ss_dssp HHHHHHHHHHHHHHHG-GGCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCCeECHHHHHHHHHHHcccccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 4567899999999994 5679999999999975 1 35778999999999999999999999998876554433
No 319
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=98.45 E-value=6.5e-07 Score=78.22 Aligned_cols=71 Identities=18% Similarity=0.299 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
..+++++.+.++.+|..+|.+++|+|+.+++..++... .++..++..++..+|.+++|.|+++||..++..
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 75 (147)
T 4ds7_A 3 QNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSR 75 (147)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 36899999999999999999999999999999999984 568899999999999999999999999988754
No 320
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.44 E-value=4.2e-07 Score=79.20 Aligned_cols=68 Identities=21% Similarity=0.389 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 12 SKEHQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 12 s~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
|+++.+.++.+|..+|.+++|+|+.+++..++.. ..++..++..++..+|.+++|.|+++||..++..
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 70 (142)
T 2bl0_C 1 GDDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGR 70 (142)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCeeeHHHHHHHHHH
Confidence 4678899999999999999999999999999988 4577889999999999999999999999987754
No 321
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.6e-07 Score=86.01 Aligned_cols=69 Identities=19% Similarity=0.337 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
..||++|.++++++|..+|.|++|+|+.+|+..+++. ..++..++..++..+|.+++|.++|.||+.++
T Consensus 3 ~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~d~d~~~~i~~~ef~~~~ 73 (176)
T 2lhi_A 3 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALM 73 (176)
T ss_dssp CCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTTCSSCSSSBCTTHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHHHHhCcCCCccchHHHHHHHH
Confidence 4799999999999999999999999999999999998 46788999999999999999999999998765
No 322
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=98.43 E-value=7.3e-07 Score=77.70 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC---CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLS---KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~---~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
..+.++.+|+.+|.|++|+|+.+++..++... .++.+++..++..+|.+++|.|+++||+.++.-.
T Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 106 (135)
T 3h4s_E 38 FVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRL 106 (135)
T ss_dssp HHHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHCSSCSSSBCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHh
Confidence 46789999999999999999999999999984 4789999999999999999999999999887543
No 323
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=98.43 E-value=3.8e-07 Score=80.21 Aligned_cols=71 Identities=24% Similarity=0.241 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
..+++++.+.+..+|..+|.+++|+|+.+|+..++... .++..++..+|..+|.+++|.|+++||..++..
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 75 (153)
T 3ox6_A 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGP 75 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSTTCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCccCcHHHHHHHHHH
Confidence 46899999999999999999999999999999999984 568899999999999999999999999987753
No 324
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=98.43 E-value=3.6e-07 Score=76.26 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC-----CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIADSDGDGRITGNDATKFLGLS-----KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-----~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.+.+.++.+|..+|.|++|+|+.+++..++... .++.+++..++..+|.+++|.|+++||+.++.
T Consensus 38 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 108 (110)
T 1pva_A 38 AMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVH 108 (110)
T ss_dssp TSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 3446789999999999999999999999999975 36889999999999999999999999998764
No 325
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=98.43 E-value=5.1e-07 Score=80.00 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..+ +++.+.++.+|..+|.|++|+|+.+|+..++... .++..++..++..+|.+++|.|+|+||+.++.
T Consensus 41 ~~l-~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~eF~~~~~ 111 (147)
T 1wy9_A 41 EDL-PSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMML 111 (147)
T ss_dssp TTH-HHHHHHHHHHHTTSCCCTTSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCTTEECHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 445 6788999999999999999999999999999984 47889999999999999999999999998764
No 326
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=98.43 E-value=8e-07 Score=77.96 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
...++.+|+.+|.|++|+|+.++++.++... .++.+++.+++..+|.+++|.|+++||+.+|
T Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~eF~~~~ 141 (143)
T 2obh_A 78 KEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 141 (143)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 4578999999999999999999999999884 5789999999999999999999999998765
No 327
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=4.2e-07 Score=83.17 Aligned_cols=62 Identities=21% Similarity=0.394 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
..+.++.+|+.+|.|++|+|+.+|++.+|.. ..++.+++..+++.+| |++|.|+|+||+.+|
T Consensus 82 ~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~d-d~dG~I~~~EF~~~m 145 (176)
T 2lhi_A 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVS-DGSGEINIQQFAALL 145 (176)
T ss_dssp HHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHH-TTSSCBCTTHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhhc-CCCCeEeHHHHHHHH
Confidence 3567999999999999999999999999998 4678999999999999 999999999999876
No 328
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=98.41 E-value=5.1e-07 Score=75.20 Aligned_cols=63 Identities=25% Similarity=0.344 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC-----CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLS-----KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-----~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
..+.++.+|..+|.|++|+|+.+|+..++... .++.+++..+++.+|.+++|.|+++||..++
T Consensus 40 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~EF~~~~ 107 (109)
T 3fs7_A 40 TPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLV 107 (109)
T ss_dssp CHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 45678999999999999999999999999875 3688999999999999999999999998776
No 329
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.41 E-value=3.4e-06 Score=87.88 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=57.2
Q ss_pred ccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCcCh
Q 008954 288 DQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDT 367 (547)
Q Consensus 288 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~~~ 367 (547)
..+.||||||........... ...+ ..+..+|.+++|+|+.. + ....+..+.+.+......+|+||+|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~e---l~~i--~~~~~pd~vlLVvDA~~-g--q~a~~~a~~f~~~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEE---MKQI--SNVIHPHEVILVIDGTI-G--QQAYNQALAFKEATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHH---HHHH--HHHHCCSEEEEEEEGGG-G--GGHHHHHHHHHHSCTTEEEEEECCSSCSS
T ss_pred CCEEEEECCCcccchHHHHHH---HHHH--HHhhcCceEEEEEeCCC-c--hhHHHHHHHHHhhCCCeEEEEECCCCccc
Confidence 368999999987532221110 1111 22457999999999975 2 23344555555444566799999999865
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcEEEEecccCCCCCCC
Q 008954 368 QQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPING 405 (547)
Q Consensus 368 ~~l~~~~~~l~~~l~~~~~~~~v~~v~isa~~~~~l~~ 405 (547)
.... ... ... ..++..|+|. |+++++
T Consensus 255 gG~~--ls~-----~~~---~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 255 GGGA--LSA-----VAA---TGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp HHHH--HHH-----HHT---TCCCEEEEEC--SSSTTC
T ss_pred ccHH--HHH-----HHH---HCCCEEEEEc--CCChHH
Confidence 3211 111 111 2334467775 888865
No 330
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=98.40 E-value=5.4e-07 Score=75.08 Aligned_cols=64 Identities=27% Similarity=0.341 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC-----CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLS-----KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-----~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..+.++.+|+.+|.|++|+|+.+++..++... .++.+++..++..+|.+++|.|+++||..++.
T Consensus 39 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (109)
T 5pal_A 39 TDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVA 107 (109)
T ss_dssp CHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45678999999999999999999999999863 46889999999999999999999999998764
No 331
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=98.39 E-value=6e-07 Score=80.71 Aligned_cols=61 Identities=16% Similarity=0.418 Sum_probs=55.7
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCC--CCCCccCHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADS--KRQGFLDLAEFVTAM 77 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~--~~~g~l~~~eF~~~~ 77 (547)
+.++++|+.+|++++|+|+.++++.+|.. ..++.+++..+++.+|. |++|.|+|+||+..|
T Consensus 85 ~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m 149 (159)
T 3i5g_C 85 DEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKV 149 (159)
T ss_dssp HHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHH
Confidence 46889999999999999999999999998 46789999999999996 788999999999766
No 332
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=98.39 E-value=7.9e-07 Score=73.90 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC---C--CCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLS---K--LSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~---~--l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..+.++.+|+.+|.|++|+|+.+|+..++... + ++.+++..++..+|.+++|.|+++||+.++.
T Consensus 39 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (108)
T 2pvb_A 39 SLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIK 107 (108)
T ss_dssp CHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 35678999999999999999999999999875 3 7889999999999999999999999987663
No 333
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=98.39 E-value=3.1e-07 Score=82.02 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.++.+|+.+|.|++|+|+.++++.+|.. ..++.+++..+++.+|.+ +|.|+|+||+.+|.
T Consensus 84 ~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~~D~~-dG~I~y~EF~~~m~ 147 (153)
T 3i5g_B 84 EDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDIKG 147 (153)
T ss_dssp HHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTTCCEE-TTEECHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHHhCCC-cCEEcHHHHHHHhc
Confidence 357899999999999999999999999998 468899999999999987 99999999998764
No 334
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=98.39 E-value=6.9e-07 Score=81.73 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+++.+.++++|..+|.|++|+|+.+|+..++...+++..++..++..+|.+++|.|+++||..++.
T Consensus 35 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~ 100 (180)
T 3mse_B 35 NNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFMAGCY 100 (180)
T ss_dssp HHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCCSEECHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 778899999999999999999999999999999888999999999999999999999999987653
No 335
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=98.39 E-value=8.9e-07 Score=78.70 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+++.+.++.+|..+|.|++|+|+.+|+..++... .++.+++..++..+|.+++|.|+|+||+.++.
T Consensus 46 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~D~d~dg~I~~~eF~~~~~ 113 (150)
T 2jjz_A 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMML 113 (150)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 5678899999999999999999999999999984 47889999999999999999999999998764
No 336
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.38 E-value=5.5e-07 Score=96.86 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=41.0
Q ss_pred CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 296 PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 296 PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
++-+|+ ++|++. ++++++.+|+++|++ +.+.++.......++++.+.+ +..+++|-+..+
T Consensus 136 ~~~LSgGe~Qrv~-------iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~ 198 (538)
T 3ozx_A 136 ANILSGGGLQRLL-------VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI 198 (538)
T ss_dssp GGGCCHHHHHHHH-------HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH
T ss_pred hhhCCHHHHHHHH-------HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH
Confidence 344554 667655 899999999999999 444443333456677777765 778888777643
No 337
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=98.37 E-value=8.3e-07 Score=80.66 Aligned_cols=70 Identities=27% Similarity=0.429 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
.+++++.+.++.+|..+|.|++|.|+.+|+..++... .++..++..++..+|.+++|.|+++||..++..
T Consensus 4 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~EF~~~~~~ 75 (179)
T 2f2o_A 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75 (179)
T ss_dssp --CCSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCCCcHHHHHHHHHH
Confidence 5788999999999999999999999999999999984 567889999999999999999999999987754
No 338
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1
Probab=98.36 E-value=1.3e-07 Score=73.59 Aligned_cols=65 Identities=15% Similarity=0.308 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhCC-CCCC-cccHHHHHHHHhh-CC--C-CHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 15 HQKIYREWFDIADS-DGDG-RITGNDATKFLGL-SK--L-SRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 15 e~~~~~~~F~~~D~-~~~G-~Is~~e~~~~l~~-~~--l-~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
+.+.++.+|..+|. |++| +|+.+++..+++. .+ + +..++..++..+|.+++|.|+++||..++.-
T Consensus 5 ~~~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 75 (78)
T 1cb1_A 5 SPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKK 75 (78)
T ss_dssp CHHHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcCEeCHHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 46789999999999 9999 9999999999986 43 5 7778999999999999999999999987753
No 339
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=98.35 E-value=8.3e-07 Score=73.84 Aligned_cols=64 Identities=27% Similarity=0.332 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC-----CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLS-----KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-----~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..+.++.+|+.+|.|++|+|+.+++..++... .++.+++..++..+|.+++|.|+++||..++.
T Consensus 39 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 107 (109)
T 1rwy_A 39 SADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVA 107 (109)
T ss_dssp CHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 45678999999999999999999999999874 47889999999999999999999999998764
No 340
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=98.35 E-value=6.7e-07 Score=74.35 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC-----CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLS-----KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-----~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
+.+.++.+|+.+|.|++|+|+.+|+..++... .++.+++..++..+|.+++|.|+++||+.++
T Consensus 39 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~ 106 (108)
T 1rro_A 39 SASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMV 106 (108)
T ss_dssp CHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSSEEHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 45678999999999999999999999999885 3688999999999999999999999998765
No 341
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.35 E-value=4.6e-07 Score=98.68 Aligned_cols=62 Identities=18% Similarity=0.085 Sum_probs=43.1
Q ss_pred CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 295 TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 295 TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
.++-+|+ ++|++. ++++++.+++++|++ +.+.++.......++++.+...+..+++|-+..+
T Consensus 218 ~~~~LSgGe~Qrv~-------iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~ 282 (608)
T 3j16_B 218 DIEKLSGGELQRFA-------IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS 282 (608)
T ss_dssp CTTTCCHHHHHHHH-------HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH
T ss_pred ChHHCCHHHHHHHH-------HHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3566665 667655 899999999999999 4444332334556777777777788888777644
No 342
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=98.35 E-value=8.6e-07 Score=73.81 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC-----CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLS-----KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-----~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
..+.++.+|+.+|.|++|+|+.+|+..++... .++.+++..++..+|.+++|.|+++||..++
T Consensus 40 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~ 107 (109)
T 1bu3_A 40 SADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALV 107 (109)
T ss_dssp CHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 35678999999999999999999999999874 3688999999999999999999999998765
No 343
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=98.34 E-value=1.7e-06 Score=77.42 Aligned_cols=69 Identities=28% Similarity=0.360 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+++++...++.+|..+|.+++|+|+.+|+..++.. ..++..++..+|..+|.+++|.|++.||..++.
T Consensus 20 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 90 (166)
T 2aao_A 20 SLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATL 90 (166)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHHHHHHCTTCCSSBCHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 478899999999999999999999999999999998 456788999999999999999999999987763
No 344
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.34 E-value=2.3e-07 Score=90.64 Aligned_cols=36 Identities=28% Similarity=0.486 Sum_probs=24.0
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccce
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDR 237 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~ 237 (547)
..|+++|.+|+|||||+|+|+|... ..+++.|++|+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~--~~~~~~~g~T~ 135 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA--SSVGAQPGITK 135 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------C
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc--cccCCCCCCcc
Confidence 5899999999999999999999886 56666665544
No 345
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=98.34 E-value=1.7e-06 Score=76.11 Aligned_cols=62 Identities=27% Similarity=0.440 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
.+.+..+|+.+|++++|+|+.+++..++... .++.+++..++..+|.+++|.|+|+||+.+|
T Consensus 82 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~ 145 (148)
T 1exr_A 82 EEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMM 145 (148)
T ss_dssp HHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 4567889999999999999999999999884 5789999999999999999999999998876
No 346
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=98.32 E-value=2.9e-06 Score=77.95 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 12 SKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 12 s~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
.......++.+|+.+|.|++|+|+.+|+..++...+++.+++..++..+|.|++|.|+++||..++.-.
T Consensus 104 ~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~ 172 (191)
T 2ccm_A 104 PEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLWTEY 172 (191)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSBCCHHHHHHHHHTTTCCHHHHHHHHHHHTTTTTSCCBHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Confidence 444567899999999999999999999999999888999999999999999999999999999887643
No 347
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=98.32 E-value=1.7e-06 Score=75.61 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHH---CCCCCCccCHHHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALA---DSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~---d~~~~g~l~~~eF~~~~~lv 80 (547)
.+|+++.+.++.+|..+|.+++|+|+.+++..++... .++..++..++..+ |.++ |.|+++||..++...
T Consensus 1 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~~~~d~~~-g~i~~~eF~~~~~~~ 75 (149)
T 2mys_C 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNA-AAITFEEFLPMLQAA 75 (149)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccccC-CcCcHHHHHHHHHHH
Confidence 4789999999999999999999999999999999984 56788999999999 9999 999999999877543
No 348
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.32 E-value=1.8e-06 Score=89.93 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=43.7
Q ss_pred ccceEEcCCCCCC--hhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCc
Q 008954 288 DQVTFVDTPGVLS--GEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQV 365 (547)
Q Consensus 288 ~~l~lvDTPG~~~--~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~ 365 (547)
..+.|+||||... ........ ...+.+ +..+|.+++|+|+.. + .+..+..+.+.+.-....+|+||+|..
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~e---l~~i~~--~~~pd~vlLVlDa~~-g--q~a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEE---MKEMYD--VLKPDDVILVIDASI-G--QKAYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHH---HHHHHH--HHCCSEEEEEEEGGG-G--GGGHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred CCEEEEECCCCccccCCHHHHHH---HHHHHH--hhCCcceEEEEeCcc-c--hHHHHHHHHHhcccCCcEEEEeccccc
Confidence 3688999999754 22111110 111122 347899999999975 2 233445555554335678999999987
Q ss_pred Ch
Q 008954 366 DT 367 (547)
Q Consensus 366 ~~ 367 (547)
..
T Consensus 252 a~ 253 (433)
T 3kl4_A 252 AK 253 (433)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 349
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.32 E-value=3.8e-07 Score=108.30 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=91.4
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~ 260 (547)
+.+++.++. +|.+|||||++|+|||||++.|+|.. .|+.+++.+ +|.+... ....+.+.|+.
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~--------~p~~G~I~i--DG~di~~i~~~~lR~~i~~V~Qdp 1162 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY--------DTLGGEIFI--DGSEIKTLNPEHTRSQIAIVSQEP 1162 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS--------CCSSSEEEE--TTEETTTBCHHHHHTTEEEECSSC
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc--------cCCCCEEEE--CCEEhhhCCHHHHHhheEEECCCC
Confidence 356666555 89999999999999999999999987 455566554 4433222 23456677888
Q ss_pred CCCCCccccccchh------------hh-hhh-------hcccccccccceEEcCCCC-CC-hhhhhhhcccChHHHHHH
Q 008954 261 LPFSGLTTFGGAFL------------SK-FEC-------SQMSHPLLDQVTFVDTPGV-LS-GEKQRTQRTYDFTGVISW 318 (547)
Q Consensus 261 ~~~~~l~~~~~~~~------------~~-~~~-------~~~~~~ll~~l~lvDTPG~-~~-~~~~~~~~~~~~~~~~~~ 318 (547)
..|.+ +..+|..+ +. .+. ..+|.-+- +.|.--|. +| |++|++. +||+
T Consensus 1163 ~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~Gld---T~vge~G~~LSgGQrQria-------iARA 1231 (1321)
T 4f4c_A 1163 TLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFE---TRVGDRGTQLSGGQKQRIA-------IARA 1231 (1321)
T ss_dssp CCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTC---SEETTTSCSSCHHHHHHHH-------HHHH
T ss_pred EeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCC---CEecCCCcccCHHHHHHHH-------HHHH
Confidence 88876 33333210 00 000 01111100 11221121 23 4677765 8999
Q ss_pred HhhcCCeEEEEecCCCCCCCHHHHHHHHHHhC--CCCeEEEEeccCCCc
Q 008954 319 FAAKCDLILLLFDPHKLDISDEFKRVIASLRG--NDDKIRVVLNKADQV 365 (547)
Q Consensus 319 ~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~--~~~~iivVlNK~D~~ 365 (547)
++.++.++|++-..+..+. +.+..+.+.+.+ .+.++++|.++...+
T Consensus 1232 llr~~~ILiLDEaTSaLD~-~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDT-ESEKVVQEALDRAREGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTS-HHHHHHHHHHTTTSSSSEEEEECSSSSTT
T ss_pred HHhCCCEEEEeCccccCCH-HHHHHHHHHHHHHcCCCEEEEeccCHHHH
Confidence 9999999999944333332 223445555544 367888888876544
No 350
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.32 E-value=1.4e-07 Score=101.75 Aligned_cols=163 Identities=15% Similarity=0.063 Sum_probs=81.3
Q ss_pred ccCCC-CCCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEE--EEeCCCcc--------ccCCceeeec
Q 008954 190 FLTNS-DFDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVV--VMSGPDER--------TIPGNTIAVH 258 (547)
Q Consensus 190 ~~~~~-~~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~--i~~~~~~~--------~~~g~~~~~~ 258 (547)
.+.+. .+..|.+++|+|+||||||||++.|+|... +.+.........+ ...+.... ...+....++
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 34444 467999999999999999999999999873 2222100000000 00010000 0001111111
Q ss_pred CCCCCCCccccccc--hhhhhhhhcccccccccceEEc----CCCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--
Q 008954 259 ADLPFSGLTTFGGA--FLSKFECSQMSHPLLDQVTFVD----TPGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL-- 329 (547)
Q Consensus 259 ~~~~~~~l~~~~~~--~~~~~~~~~~~~~ll~~l~lvD----TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv-- 329 (547)
....+.... .+.. .+...........++..+.+-+ .|+-+|+ ++|++. ++++++.+|+++|++
T Consensus 114 ~~~~~~~~~-~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~-------iAraL~~~P~lLlLDEP 185 (538)
T 1yqt_A 114 YVDLIPKAV-KGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVA-------IAAALLRNATFYFFDEP 185 (538)
T ss_dssp CGGGSGGGC-CSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHH-------HHHHHHSCCSEEEEEST
T ss_pred hhhhcchhh-hccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHH-------HHHHHhcCCCEEEEECC
Confidence 100000000 0000 0000001112223333443322 2344454 667655 899999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 330 FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 330 ~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+.+.++.......++++.+.+.+..+++|-+..+
T Consensus 186 Ts~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 186 SSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4444433334566777777666777877776633
No 351
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=98.30 E-value=1.2e-06 Score=77.96 Aligned_cols=71 Identities=27% Similarity=0.447 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
.+++++.+.++.+|..+|.|++|+|+..++..++... .++...+..+|..+|.+++|.|+++||..++...
T Consensus 13 ~ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 85 (162)
T 1top_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQ 85 (162)
T ss_dssp HSCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCcEeHHHHHHHHHHH
Confidence 5899999999999999999999999999999999984 5678999999999999999999999999877543
No 352
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.29 E-value=4.4e-07 Score=90.46 Aligned_cols=151 Identities=17% Similarity=0.111 Sum_probs=75.8
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc-------c---cCCceeeecCCC-CCC
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER-------T---IPGNTIAVHADL-PFS 264 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~-------~---~~g~~~~~~~~~-~~~ 264 (547)
+..|.+++++|++||||||+++.|+|.. .|..+++.+...+.... . ..+..+..+... .+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l--------~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL--------KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH--------HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH--------HHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 3478899999999999999999999986 23334444322111100 0 112333333221 122
Q ss_pred CccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhcc-cChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHH
Q 008954 265 GLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRT-YDFTGVISWFAAKCDLILLLFDPHKLDISDEFKR 343 (547)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~-~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ 343 (547)
..+.+.+...... .. ....++||.|............ .....++++++.+++-+++++|++. +... ..
T Consensus 169 ~~~v~e~l~~~~~-----~~---~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpts-glD~--~~ 237 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-----EG---YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNT-GLNM--LP 237 (302)
T ss_dssp HHHHHHHHHHHHH-----TT---CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGG-GGGG--HH
T ss_pred HHHHHHHHHHHHH-----cC---CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCC-CcCH--HH
Confidence 2222222111100 00 2357899999975321111100 0122355566788996667777543 2211 12
Q ss_pred HHHHHh-CCCCeEEEEeccCCCcC
Q 008954 344 VIASLR-GNDDKIRVVLNKADQVD 366 (547)
Q Consensus 344 ll~~l~-~~~~~iivVlNK~D~~~ 366 (547)
.++.+. ..+.. +++++|.|...
T Consensus 238 ~~~~~~~~~g~t-~iiiThlD~~~ 260 (302)
T 3b9q_A 238 QAREFNEVVGIT-GLILTKLDGSA 260 (302)
T ss_dssp HHHHHHHHTCCC-EEEEECCSSCS
T ss_pred HHHHHHHhcCCC-EEEEeCCCCCC
Confidence 234443 23444 56678899764
No 353
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=98.28 E-value=1.8e-06 Score=81.95 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=66.3
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
..+++++.+.++++|..+|.|++|+|+.+|+..+++. ..++..++..++..+|.+++|.|+++||..++..+
T Consensus 43 ~~l~~~e~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~EF~~~~~~~ 116 (220)
T 3sjs_A 43 NTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFM 116 (220)
T ss_dssp GGCCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHCCBGGGBCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999988 45789999999999999999999999999887643
No 354
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=98.28 E-value=2.4e-06 Score=77.05 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVS 81 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~ 81 (547)
.+.++.+|+.+|.|++|+|+.+|+..++...+++.+++..++..+|.+++|.|+++||+.++.-..
T Consensus 93 ~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~ 158 (174)
T 1q80_A 93 EGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFF 158 (174)
T ss_dssp HTHHHHHHHHHCTTSSSSBCHHHHHHHHHHHTCCGGGHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCceEeHHHHHHHHHHHh
Confidence 567899999999999999999999999998889999999999999999999999999999886443
No 355
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.26 E-value=3.2e-07 Score=100.06 Aligned_cols=61 Identities=21% Similarity=0.185 Sum_probs=41.7
Q ss_pred CCCCCh-hhhhhhcccChHHHHHHHhhcCCeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 296 PGVLSG-EKQRTQRTYDFTGVISWFAAKCDLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 296 PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
|+-+|+ ++|++. ++++++.+++++|++ +.+.++.......++++.+.+.+..+++|-+..+
T Consensus 226 ~~~LSGGekQRva-------IAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~ 289 (607)
T 3bk7_A 226 LHQLSGGELQRVA-------IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 289 (607)
T ss_dssp GGGCCHHHHHHHH-------HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred hhhCCHHHHHHHH-------HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 445554 666655 899999999999999 4444433344566777777655777777766533
No 356
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=98.26 E-value=6.2e-07 Score=82.82 Aligned_cols=68 Identities=29% Similarity=0.397 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
.+|+++.+.++.+|..+|.|++|.|+.+|+..++... .++..++..+|..+|.+++|.|+++||..++
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~E~~~~l~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~ 72 (188)
T 1s6i_A 3 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAAT 72 (188)
T ss_dssp SSSCTTTCSHHHHHHTTSSSSSSCEEHHHHHHHHTTTTCCCCHHHHHHHHHHTCTTCSSEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCeEeHHHHHHHH
Confidence 5788889999999999999999999999999999984 5678999999999999999999999998765
No 357
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=98.26 E-value=3.3e-06 Score=75.25 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=60.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCC--CC---------------------------------HH
Q 008954 7 PITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSK--LS---------------------------------RQ 51 (547)
Q Consensus 7 ~~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~--l~---------------------------------~~ 51 (547)
....||++|.+.++++|..+|.|++|+|+..++..+|+..+ ++ .+
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~~~~ 85 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPED 85 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHHHTSSSCCCSHHHHHTTTTTTTTCCCHH
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHHHhccCCccHHHHHHHHHhhhcccccHH
Confidence 34679999999999999999999999999999999998732 22 34
Q ss_pred HHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcCCCCCchhh
Q 008954 52 ELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAGREITSDIL 94 (547)
Q Consensus 52 ~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g~~~~~~~~ 94 (547)
.+...|+.+|.+++|+|+.+|+..++. .-|.+++.+-+
T Consensus 86 ~l~~aF~~fD~d~~G~I~~~el~~~l~-----~~g~~ls~~ei 123 (153)
T 3i5g_B 86 ALRNAFSMFDEDGQGFIPEDYLKDLLE-----NMGDNFSKEEI 123 (153)
T ss_dssp HHHHHHHTTCSSCSSCCCHHHHHHHHH-----SSSSCCCHHHH
T ss_pred HHHHHHhccccCCCCeEeHHHHHHHHH-----HcCCcCCHHHH
Confidence 456666667777777777777665543 22555554433
No 358
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=98.25 E-value=4.4e-06 Score=76.86 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHH-----HHHhhCCCCH--H-----HHHHHHHHHCCCCCCccCHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDAT-----KFLGLSKLSR--Q-----ELKQIWALADSKRQGFLDLAEFVTA 76 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~-----~~l~~~~l~~--~-----~l~~i~~~~d~~~~g~l~~~eF~~~ 76 (547)
..+++++.+.++.+|..+|.|++|+|+.+|+. .+++..+... . .+..+|..+|.+++|.|+++||..+
T Consensus 12 ~~~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~ 91 (195)
T 1qv0_A 12 DFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDG 91 (195)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCCCceEcHHHHHHH
Confidence 34599999999999999999999999999999 6777666543 3 5888999999999999999999988
Q ss_pred HHHH
Q 008954 77 MKLV 80 (547)
Q Consensus 77 ~~lv 80 (547)
+...
T Consensus 92 ~~~~ 95 (195)
T 1qv0_A 92 WKQL 95 (195)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 359
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=98.25 E-value=1.8e-06 Score=77.87 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHH----HHhhC--CCCHHHHH-----------HHHHHHCCCCCCccCHHHH
Q 008954 11 CSKEHQKIYREWFDIADSDGDGRITGNDATK----FLGLS--KLSRQELK-----------QIWALADSKRQGFLDLAEF 73 (547)
Q Consensus 11 ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~----~l~~~--~l~~~~l~-----------~i~~~~d~~~~g~l~~~eF 73 (547)
+|+++.+.++.+|..+|.|++|+|+.+|+.. +++.. .++.+++. .++..+|.+++|.|+++||
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~dg~i~~~Ef 80 (176)
T 1nya_A 1 TTAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQF 80 (176)
T ss_dssp CCSHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHH
Confidence 5788999999999999999999999999999 56654 44556655 7899999999999999999
Q ss_pred HHHHHHH
Q 008954 74 VTAMKLV 80 (547)
Q Consensus 74 ~~~~~lv 80 (547)
..++...
T Consensus 81 ~~~~~~~ 87 (176)
T 1nya_A 81 IRVTENL 87 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877543
No 360
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=98.24 E-value=3.5e-06 Score=75.60 Aligned_cols=63 Identities=29% Similarity=0.370 Sum_probs=57.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.+..+|+.+|.|++|+|+.+|+..++... .++.+++..++..+|.+++|.|+++||+.++.
T Consensus 100 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 164 (169)
T 3qrx_A 100 REEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMK 164 (169)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 5678889999999999999999999999984 57899999999999999999999999998764
No 361
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=98.23 E-value=3.1e-06 Score=75.41 Aligned_cols=62 Identities=26% Similarity=0.330 Sum_probs=58.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.+..+|+.+|.|++|+|+.+|+..++...+++.+++..++..+|.+++|.|+++||..++.
T Consensus 98 ~~~~~~F~~~D~d~~G~i~~~E~~~~l~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~ 159 (166)
T 3akb_A 98 PFLHAALGVADTDGDGAVTVADTARALTAFGVPEDLARQAAAALDTDGDGKVGETEIVPAFA 159 (166)
T ss_dssp HHHHHHHHHHCSSSSSCCBHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSBCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45899999999999999999999999999779999999999999999999999999998774
No 362
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=98.23 E-value=1.6e-06 Score=80.20 Aligned_cols=67 Identities=25% Similarity=0.312 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCC--CCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSK--LSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~--l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
.+++++.+.++++|..+|.|++|+|+.+|+..+++..+ ++ .++..++..+|.+++|.|+++||..++
T Consensus 45 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~-~~~~~l~~~~D~d~~g~i~~~EF~~~~ 113 (191)
T 3k21_A 45 QSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLP-YNFDLLLDQIDSDGSGKIDYTEFIAAA 113 (191)
T ss_dssp HCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCC-TTHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCCCcH-HHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 46888999999999999999999999999999999843 45 789999999999999999999998775
No 363
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.23 E-value=2.2e-06 Score=101.47 Aligned_cols=158 Identities=17% Similarity=0.251 Sum_probs=90.5
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccc------cCCceeeecCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERT------IPGNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~------~~g~~~~~~~~ 260 (547)
+.+++.++. .|.+|+|+|++|+|||||++.|+|.. .|+.+.+.+ +|.+... ..+.+.+.|..
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~--------~p~~G~I~i--~g~~i~~~~~~~~r~~i~~v~Q~~ 1116 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY--------DPMAGSVFL--DGKEIKQLNVQWLRAQLGIVSQEP 1116 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS--------CCSEEEEES--SSSCTTSSCHHHHTTSCEEEESSC
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--------CCCCCEEEE--CCEEcccCCHHHHHhceEEECCCC
Confidence 356776665 89999999999999999999999987 345554433 3332221 23456677776
Q ss_pred CCCCCccccccchhh------------hhhhhcccccccccc-----eEEcCC-CCCCh-hhhhhhcccChHHHHHHHhh
Q 008954 261 LPFSGLTTFGGAFLS------------KFECSQMSHPLLDQV-----TFVDTP-GVLSG-EKQRTQRTYDFTGVISWFAA 321 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~------------~~~~~~~~~~ll~~l-----~lvDTP-G~~~~-~~~~~~~~~~~~~~~~~~~~ 321 (547)
..|.+ +..+|..+. ........++....+ +.++.. .-+|+ ++|++. ++|+++.
T Consensus 1117 ~l~~~-ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~-------iARal~~ 1188 (1284)
T 3g5u_A 1117 ILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA-------IARALVR 1188 (1284)
T ss_dssp CCCSS-BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHH-------HHHHHHH
T ss_pred ccccc-cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHH-------HHHHHHc
Confidence 55543 333332110 000000011111111 112222 23454 677765 8999999
Q ss_pred cCCeEEEEe--cCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCCCc
Q 008954 322 KCDLILLLF--DPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQV 365 (547)
Q Consensus 322 ~aD~illv~--d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D~~ 365 (547)
+++++|++- .+.|........+.++.+. .+..+++|-+..+.+
T Consensus 1189 ~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A 1189 QPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLSTI 1233 (1284)
T ss_dssp CCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTGG
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHHH
Confidence 999999994 3433222233445555543 367888888776643
No 364
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.22 E-value=1.1e-06 Score=89.46 Aligned_cols=151 Identities=17% Similarity=0.115 Sum_probs=77.0
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcc----------ccCCceeeecCCC-CCC
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDER----------TIPGNTIAVHADL-PFS 264 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~----------~~~g~~~~~~~~~-~~~ 264 (547)
+..|.+|+++|++||||||+++.|+|.. .|..+++.+...+.... ...+..+..+... .+.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l--------~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL--------KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH--------HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc--------cccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 3478899999999999999999999986 23334444322111100 0112333333221 121
Q ss_pred CccccccchhhhhhhhcccccccccceEEcCCCCCChhhhhhhc-ccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHH
Q 008954 265 GLTTFGGAFLSKFECSQMSHPLLDQVTFVDTPGVLSGEKQRTQR-TYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKR 343 (547)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~-~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ 343 (547)
..+.+.+...... . -....++||.|........... ......++++++.+++-+++++|++. +.. . ..
T Consensus 226 ~~tv~e~l~~~~~-----~---~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptt-glD-~-~~ 294 (359)
T 2og2_A 226 ATVLSKAVKRGKE-----E---GYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNT-GLN-M-LP 294 (359)
T ss_dssp HHHHHHHHHHHHH-----T---TCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGG-GGG-G-HH
T ss_pred hhhHHHHHHHHHh-----C---CCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCC-CCC-H-HH
Confidence 1112222111110 0 0235789999997532111110 01123466777789997777777543 211 1 12
Q ss_pred HHHHHhC-CCCeEEEEeccCCCcC
Q 008954 344 VIASLRG-NDDKIRVVLNKADQVD 366 (547)
Q Consensus 344 ll~~l~~-~~~~iivVlNK~D~~~ 366 (547)
.++.+.+ .+.. +++++|.|...
T Consensus 295 ~~~~~~~~~g~t-~iiiThlD~~~ 317 (359)
T 2og2_A 295 QAREFNEVVGIT-GLILTKLDGSA 317 (359)
T ss_dssp HHHHHHHHTCCC-EEEEESCTTCS
T ss_pred HHHHHHHhcCCe-EEEEecCcccc
Confidence 2334432 3444 56788899764
No 365
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=98.22 E-value=1e-06 Score=82.07 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
.+++++.+.++++|..+|.|++|+|+.+|+..++... .++..++..++..+|.+++|.|+|+||+.++
T Consensus 50 ~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~~ 119 (197)
T 3pm8_A 50 HLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAAT 119 (197)
T ss_dssp HCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHHHHHHHC-------CEEHHHHHHTT
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 4689999999999999999999999999999999984 4577899999999999999999999998765
No 366
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=98.21 E-value=1.2e-06 Score=76.35 Aligned_cols=62 Identities=19% Similarity=0.400 Sum_probs=57.3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.+..+|+.+|.|++|+|+.+|+..++... .++.+++..++..+|.+++|.|+++||+.++.
T Consensus 76 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 139 (143)
T 3j04_B 76 DVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILK 139 (143)
T ss_dssp HHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHHTTCCSSSCCCSTHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHh
Confidence 568899999999999999999999999984 57899999999999999999999999998764
No 367
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=98.21 E-value=2.5e-06 Score=75.88 Aligned_cols=63 Identities=14% Similarity=0.330 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHH--HHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWA--LADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~--~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.++.+|+.+|.+++|+|+.+|++.++... .++.+++..++. .+|.+++|.|+|+||+.++.
T Consensus 84 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 150 (159)
T 2ovk_C 84 ADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVM 150 (159)
T ss_dssp HHHHHHHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCTTCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCCCcEeHHHHHHHHh
Confidence 4568899999999999999999999999984 588999999999 88999999999999997764
No 368
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=98.21 E-value=2.7e-06 Score=76.25 Aligned_cols=63 Identities=21% Similarity=0.412 Sum_probs=57.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.++.+|..+|.|++|+|+.+++..++... .++.+++..++..+|.+++|.|+++||+.++.
T Consensus 94 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~ 158 (166)
T 2mys_B 94 EDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVIT 158 (166)
T ss_pred HHHHHHHHHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHH
Confidence 3568899999999999999999999999984 47899999999999999999999999998774
No 369
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=98.21 E-value=8e-07 Score=79.87 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHHHhhhCC--CCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADS--DGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~--~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
++||++|.+.++++|..+|. |++|+|+..|+..+|+.. .++..++..++. .+.+++|.|+|++|+.++.
T Consensus 1 sqLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~~~-~d~~~~g~i~f~eFl~~~~ 73 (159)
T 3i5g_C 1 SQLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGG-TKKMGEKAYKLEEILPIYE 73 (159)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTTTC-CSSTTSCEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHc-ccccCCCcccHHHHHHHHH
Confidence 36999999999999999995 899999999999999985 457888887754 3667889999999987764
No 370
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=98.20 E-value=5.4e-06 Score=73.61 Aligned_cols=64 Identities=20% Similarity=0.401 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCC--CCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLSK--LSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~--l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
....++.+|+.+|.+++|+|+.+++..++...+ ++.+++..++..+|.+++|.|+++||..++.
T Consensus 94 ~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 159 (162)
T 1top_A 94 SEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMME 159 (162)
T ss_dssp HHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 456789999999999999999999999999854 7899999999999999999999999998774
No 371
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.20 E-value=1.8e-06 Score=81.85 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=22.2
Q ss_pred cEEEEeeCCCCChhHHHHHHHhCC
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRCN 223 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~~ 223 (547)
++|+|+|.+|+|||||+|.|++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 679999999999999999999875
No 372
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.20 E-value=1.7e-06 Score=102.47 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=85.7
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCcccc------CCceeeecCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTI------PGNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~------~g~~~~~~~~ 260 (547)
+.+++.++. +|.+++|+|++|+|||||++.|+|.. .|+.+.+.+ +|.+.... ...+.+.|..
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~--------~~~~G~i~i--~g~~i~~~~~~~~r~~i~~v~Q~~ 473 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY--------DPLDGMVSI--DGQDIRTINVRYLREIIGVVSQEP 473 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS--------CCSEEEEEE--TTEEGGGSCHHHHHHHEEEECSSC
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCeEEEE--CCEEHHhCCHHHHHhheEEEcCCC
Confidence 355665554 89999999999999999999999987 345555443 33221111 1245567777
Q ss_pred CCCCCccccccchhhhh-----hh-----hcccccccc----cc-eEEcCC-CCCCh-hhhhhhcccChHHHHHHHhhcC
Q 008954 261 LPFSGLTTFGGAFLSKF-----EC-----SQMSHPLLD----QV-TFVDTP-GVLSG-EKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~~-----~~-----~~~~~~ll~----~l-~lvDTP-G~~~~-~~~~~~~~~~~~~~~~~~~~~a 323 (547)
..|.+ +..+|...... +. ....++.+. .+ +.++.. .-+|+ ++|++. ++|+++.+|
T Consensus 474 ~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qria-------iARal~~~p 545 (1284)
T 3g5u_A 474 VLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIA-------IARALVRNP 545 (1284)
T ss_dssp CCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHH-------HHHHHHHCC
T ss_pred ccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHH-------HHHHHhcCC
Confidence 66665 55555432110 00 000111111 11 112222 23444 677765 899999999
Q ss_pred CeEEEEe--cCCCCCCCHHHHHHHHHHhCCCCeEEEEecc
Q 008954 324 DLILLLF--DPHKLDISDEFKRVIASLRGNDDKIRVVLNK 361 (547)
Q Consensus 324 D~illv~--d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK 361 (547)
+++|++- .+.|........+.++.+. .+..+++|-+.
T Consensus 546 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~ 584 (1284)
T 3g5u_A 546 KILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHR 584 (1284)
T ss_dssp SEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 9999993 3333211222333444443 36677776665
No 373
>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}
Probab=98.19 E-value=2.5e-06 Score=78.14 Aligned_cols=63 Identities=19% Similarity=0.455 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHh-hCC---C------CHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLG-LSK---L------SRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~-~~~---l------~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.++.+|+.+|.|++|+|+.+|+..++. ..+ + +.+++..++..+|.|++|.|+++||..++.
T Consensus 97 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~ 169 (179)
T 3a8r_A 97 DNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLL 169 (179)
T ss_dssp HHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSTTCCSEECHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccccccccccchHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 46789999999999999999999999998 533 4 667899999999999999999999998774
No 374
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.19 E-value=3.3e-06 Score=100.26 Aligned_cols=156 Identities=21% Similarity=0.317 Sum_probs=89.6
Q ss_pred cccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccC------CceeeecCC
Q 008954 189 PFLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIP------GNTIAVHAD 260 (547)
Q Consensus 189 ~~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~------g~~~~~~~~ 260 (547)
+.+++.++. .|..|+|+|++|+|||||++.|+|.. .|+.+.+.+ +|.+.+..+ .++.+.|+.
T Consensus 432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~--------~~~~G~I~i--dG~~i~~~~~~~lr~~i~~v~Q~~ 501 (1321)
T 4f4c_A 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY--------DVLKGKITI--DGVDVRDINLEFLRKNVAVVSQEP 501 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS--------CCSEEEEEE--TTEETTTSCHHHHHHHEEEECSSC
T ss_pred ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc--------ccccCcccC--CCccchhccHHHHhhcccccCCcc
Confidence 345555544 89999999999999999999999987 455555544 332222221 245567777
Q ss_pred CCCCCccccccchhhh-------h--hhhc-cccccc----cc-ceEEcCCCC-CC-hhhhhhhcccChHHHHHHHhhcC
Q 008954 261 LPFSGLTTFGGAFLSK-------F--ECSQ-MSHPLL----DQ-VTFVDTPGV-LS-GEKQRTQRTYDFTGVISWFAAKC 323 (547)
Q Consensus 261 ~~~~~l~~~~~~~~~~-------~--~~~~-~~~~ll----~~-l~lvDTPG~-~~-~~~~~~~~~~~~~~~~~~~~~~a 323 (547)
..|.+ +..+|....+ . .+.. ..++.+ .. -+.|.--|. +| |++||+. +||+++.++
T Consensus 502 ~Lf~~-TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRia-------iARAl~~~~ 573 (1321)
T 4f4c_A 502 ALFNC-TIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIA-------IARALVRNP 573 (1321)
T ss_dssp CCCSE-EHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHH-------HHHHHTTCC
T ss_pred eeeCC-chhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHH-------HHHHHccCC
Confidence 77765 3333332110 0 0000 001111 11 123333332 33 3778766 899999999
Q ss_pred CeEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccCC
Q 008954 324 DLILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKAD 363 (547)
Q Consensus 324 D~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~D 363 (547)
+++|++ +.+.|........+.+..+.+ ++++|+|-+...
T Consensus 574 ~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls 614 (1321)
T 4f4c_A 574 KILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS 614 (1321)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH
Confidence 999999 445543333344455555543 567777766543
No 375
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=98.19 E-value=2e-06 Score=75.39 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=57.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.++.+|..+|.|++|+|+.+++..++... .++.+++..++..+|.+++|.|+++||+.++.
T Consensus 83 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~ 146 (148)
T 1m45_A 83 EDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVL 146 (148)
T ss_dssp HHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTTCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 568899999999999999999999999984 47899999999999999999999999998763
No 376
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=98.19 E-value=3.4e-06 Score=77.25 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHH-----HHHhhCCCC--HH-----HHHHHHHHHCCCCCCccCHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDAT-----KFLGLSKLS--RQ-----ELKQIWALADSKRQGFLDLAEFVTA 76 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~-----~~l~~~~l~--~~-----~l~~i~~~~d~~~~g~l~~~eF~~~ 76 (547)
..+++++.++++.+|..+|.|++|+|+.+|+. .+++..+.. .. .+..+|..+|.+++|.|+++||..+
T Consensus 8 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~ 87 (191)
T 1uhk_A 8 DFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEG 87 (191)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCCTTCEEEHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhccCCCCCcCcHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhCcCCCCcCcHHHHHHH
Confidence 45689999999999999999999999999999 778776554 33 5888999999999999999999987
Q ss_pred HHHH
Q 008954 77 MKLV 80 (547)
Q Consensus 77 ~~lv 80 (547)
+...
T Consensus 88 ~~~~ 91 (191)
T 1uhk_A 88 WKKL 91 (191)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 377
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.18 E-value=2.5e-06 Score=74.32 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 14 EHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 14 ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.....++.+|+.+|.|++|+|+.+++..++... .++.+++..++..+|.+++|.|+++||+.++.
T Consensus 73 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 139 (145)
T 2bl0_B 73 EQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLV 139 (145)
T ss_dssp GGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHHH
Confidence 345678999999999999999999999999985 47899999999999999999999999988764
No 378
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.17 E-value=1.7e-06 Score=96.06 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=43.7
Q ss_pred CCCCCh-hhhhhhcccChHHHHHHHhhcCC--eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 296 PGVLSG-EKQRTQRTYDFTGVISWFAAKCD--LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 296 PG~~~~-~~~~~~~~~~~~~~~~~~~~~aD--~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
|+-+|+ ++|++. ++++++.+++ ++|++ +.+.++.....+.++++.+++.+..+++|-+..
T Consensus 200 ~~~LSGGe~QRv~-------iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 200 AGTLSGGEAQRIR-------LATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp GGGSCHHHHHHHH-------HHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred cccCCHHHHHHHH-------HHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 555665 666655 8999999988 99999 445554556677888888877777887776653
No 379
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=98.17 E-value=3.9e-06 Score=74.45 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
...+..+|+.+|.+++|+|+.+++..++.. ..++.+++..++..+|.+++|.|+++||+.++.
T Consensus 95 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 159 (161)
T 3fwb_A 95 LDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAICT 159 (161)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCSSSSSSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 457889999999999999999999999998 457889999999999999999999999988764
No 380
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=98.16 E-value=5.5e-07 Score=79.33 Aligned_cols=70 Identities=17% Similarity=0.316 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCC--CCCccCHHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSK--RQGFLDLAEFVTAMKL 79 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~--~~g~l~~~eF~~~~~l 79 (547)
.+|+++.+.++.+|..+|.+++|+|+.+|+..++... .++..++..++..+|.+ ++|.|+++||+.++..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~g~i~~~eF~~~~~~ 76 (151)
T 1w7j_B 3 EFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQA 76 (151)
T ss_dssp --------CHHHHHHHHCCSSSSEEESTTHHHHHHHTTCCCCHHHHHHHTTCCCHHHHTTCEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCcCCCCcCcHHHHHHHHHH
Confidence 5789999999999999999999999999999999984 56788999999999999 9999999999987754
No 381
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=98.16 E-value=4.2e-06 Score=78.17 Aligned_cols=62 Identities=19% Similarity=0.447 Sum_probs=57.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 18 IYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 18 ~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
.++.+|+.+|.|++|+|+.+|+..++...+++.+++..++..+|.|++|.|+++||..++.-
T Consensus 129 ~~~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~ 190 (208)
T 2hpk_A 129 LSNSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGKLERTELVHLFRK 190 (208)
T ss_dssp HHHHHHHHHCTTCSSSBCHHHHHHHHHHTTSCTTHHHHHHHHHCTTCCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCCHHHHHHHHHHhCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 37899999999999999999999999997899999999999999999999999999988753
No 382
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=98.15 E-value=1.9e-06 Score=71.29 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=51.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhh-----CCC--CH-----------HHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 18 IYREWFDIADSDGDGRITGNDATKFLGL-----SKL--SR-----------QELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 18 ~~~~~F~~~D~~~~G~Is~~e~~~~l~~-----~~l--~~-----------~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
.++.+|..+|.|++|+|+.+|+..++.. .+. +. ..+..++..+|.|++|.|+++||..++
T Consensus 21 ~~~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~ 98 (103)
T 1snl_A 21 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLAST 98 (103)
T ss_dssp CHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHH
T ss_pred CHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHH
Confidence 4788999999999999999999999984 232 21 247889999999999999999998766
No 383
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=98.15 E-value=5.2e-06 Score=72.77 Aligned_cols=62 Identities=26% Similarity=0.430 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhh-C--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGL-S--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~-~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
.+.++.+|..+|.+++|+|+.+++..++.. . .++.+++..++..+|.+++|.|+++||+.++
T Consensus 87 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~ 151 (153)
T 3ox6_A 87 VKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 151 (153)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 467899999999999999999999999987 3 5789999999999999999999999998765
No 384
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=98.15 E-value=4e-06 Score=73.26 Aligned_cols=63 Identities=17% Similarity=0.387 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
....+..+|..+|.+++|+|+.+++..++... .++.+++..++.. |.+++|.|+++||+.++.
T Consensus 83 ~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~-d~~~dg~i~~~eF~~~~~ 147 (149)
T 2mys_C 83 TFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG-QEDSNGCINYEAFVKHIM 147 (149)
T ss_pred hHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh-CCCCCCcEeHHHHHHHHh
Confidence 45678999999999999999999999999984 4789999999999 999999999999998763
No 385
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=98.15 E-value=1.6e-06 Score=76.85 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHhhhCC--CCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADS--DGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~--~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
.+|+++.+.++.+|..+|. +++|+|+.+++..++... .++..++..+ ..+|.+++|.|+++||..++...
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l-~~~D~~~~g~i~~~eF~~~~~~~ 75 (156)
T 1wdc_C 2 KLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAV-GGTHKMGEKSLPFEEFLPAYEGL 75 (156)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCCCHHHHHHT-TCCSSTTSCEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCCCCHHHHHHH-HhhCCCCCCeeeHHHHHHHHHHH
Confidence 4899999999999999999 999999999999999984 5678889999 99999999999999999877543
No 386
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=98.14 E-value=4.9e-06 Score=64.40 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHC-CC----CCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALAD-SK----RQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d-~~----~~g~l~~~eF~~~~~ 78 (547)
.+.++++|+.+ ++++|+|+..+++. .++.+++..+++.+| .+ ++|.|+|.+|+..|.
T Consensus 9 ~eel~eAFr~f-~dg~G~It~~eLr~-----~lt~eevd~~i~~~d~~dg~~~~dG~idY~eF~~~m~ 70 (75)
T 1h8b_A 9 AEQVIASFRIL-ASDKPYILAEELRR-----ELPPDQAQYCIKRMPAYSGPGSVPGALDYAAFSSALY 70 (75)
T ss_dssp HHHHHHHHHHH-TTSCSSBCHHHHHH-----HSCHHHHHHHHHHSCSCCCSSCCTTCBCHHHHHHHHT
T ss_pred HHHHHHHHHHH-hcCCCCcCHHHHHh-----cCCHHHHHHHHHhcCcccCCCCCCCcCcHHHHHHHHh
Confidence 35799999999 99999999999999 499999999999999 56 579999999988763
No 387
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=98.14 E-value=3.4e-06 Score=76.67 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
...++.+|+.+|.|++|+|+.+|+..++...+++.+++..++..+|.|++|.|+++||..++.-.
T Consensus 104 ~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~ 168 (185)
T 2sas_A 104 QNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRL 168 (185)
T ss_dssp HHHHHHHHHHHCTTSSSCCCHHHHHHHTTSSCCCCSSHHHHHHHHHTTTTSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCeEcHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence 46789999999999999999999999999888898999999999999999999999999887643
No 388
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=98.14 E-value=2.3e-06 Score=75.35 Aligned_cols=62 Identities=26% Similarity=0.473 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC----------CCCHHHHHHHH----HHHCCCCCCccCHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS----------KLSRQELKQIW----ALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~----------~l~~~~l~~i~----~~~d~~~~g~l~~~eF~~~~ 77 (547)
.+.++.+|+.+|.|++|+|+.+|+..++... .++.+++..+| ..+|.|++|.|+++||+.++
T Consensus 67 ~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~g~~~s~~e~~~~~~~~f~~~D~d~dG~Is~~EF~~~~ 142 (143)
T 3a4u_B 67 QELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSL 142 (143)
T ss_dssp HHHHHHHHHHTCTTCSSCEEHHHHHHTCC-------------CCHHHHHHHHHHHHHHHCTTCSSEECHHHHHC--
T ss_pred HHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence 3568889999999999999999999999873 47788886666 99999999999999998654
No 389
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=98.14 E-value=4.6e-06 Score=75.20 Aligned_cols=63 Identities=22% Similarity=0.426 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
...++.+|..+|.|++|+|+.+|+..++...+++.+++..++..+|.+++|.|+++||..++.
T Consensus 101 ~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~ 163 (176)
T 1nya_A 101 GPVVKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVR 163 (176)
T ss_dssp HHHHHHHHHHTCSSCCSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 456899999999999999999999999999779999999999999999999999999998774
No 390
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=98.13 E-value=5.6e-06 Score=75.97 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHhhh-CCCCCCcccHHHHHHHHhhC----C--CCHHHHHHHH-----------HHHCCCCCCccCH
Q 008954 9 TFCSKEHQKIYREWFDIA-DSDGDGRITGNDATKFLGLS----K--LSRQELKQIW-----------ALADSKRQGFLDL 70 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~-D~~~~G~Is~~e~~~~l~~~----~--l~~~~l~~i~-----------~~~d~~~~g~l~~ 70 (547)
..+++++.++++.+|..+ |.|++|+|+.+|+..++... + ++.+.+..++ ..+|.+++|.|++
T Consensus 4 ~~ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~ 83 (191)
T 2ccm_A 4 HQLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTK 83 (191)
T ss_dssp CCCCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEH
T ss_pred hhccHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECH
Confidence 458899999999999999 99999999999999999874 4 4566777777 8999999999999
Q ss_pred HHHHHHHHHH
Q 008954 71 AEFVTAMKLV 80 (547)
Q Consensus 71 ~eF~~~~~lv 80 (547)
+||..++...
T Consensus 84 ~Ef~~~~~~~ 93 (191)
T 2ccm_A 84 EEWLKMWAEC 93 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 391
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=98.13 E-value=6.6e-06 Score=74.71 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHhhh-CCCCCCcccHHHHHHHHhhC------CCCHHHHHHH-----------HHHHCCCCCCccCHHH
Q 008954 11 CSKEHQKIYREWFDIA-DSDGDGRITGNDATKFLGLS------KLSRQELKQI-----------WALADSKRQGFLDLAE 72 (547)
Q Consensus 11 ls~ee~~~~~~~F~~~-D~~~~G~Is~~e~~~~l~~~------~l~~~~l~~i-----------~~~~d~~~~g~l~~~e 72 (547)
+|+++.++++.+|..+ |.|++|+|+.+|+..++... +++..++..+ +..+|.+++|.|+++|
T Consensus 2 ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~E 81 (185)
T 2sas_A 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEE 81 (185)
T ss_dssp CCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHH
T ss_pred cCHHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHH
Confidence 7899999999999999 99999999999999988772 4566666644 8999999999999999
Q ss_pred HHHHHHHH
Q 008954 73 FVTAMKLV 80 (547)
Q Consensus 73 F~~~~~lv 80 (547)
|..++...
T Consensus 82 f~~~~~~~ 89 (185)
T 2sas_A 82 YLAMWEKT 89 (185)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887644
No 392
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=98.13 E-value=6.2e-06 Score=71.81 Aligned_cols=62 Identities=21% Similarity=0.387 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
..+.+..+|..+|.+++|+|+.+++..++... .++.+++..++..+| +++|.|+++||+.++
T Consensus 82 ~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~l 145 (147)
T 4ds7_A 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALL 145 (147)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHS-SSCSSEEHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHH
Confidence 34678889999999999999999999999984 478899999999999 999999999998765
No 393
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=98.12 E-value=2e-06 Score=80.40 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=57.9
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--C--CCCHHHHHHHH-------HHHCCCCCCccCHHHHHHH
Q 008954 8 ITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGL--S--KLSRQELKQIW-------ALADSKRQGFLDLAEFVTA 76 (547)
Q Consensus 8 ~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~--~l~~~~l~~i~-------~~~d~~~~g~l~~~eF~~~ 76 (547)
...+++++.+.++++|..+|.|++|+|+.+|+..++.. . .++.+++..++ ..+|.+++|.|+++||..+
T Consensus 27 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~~~~~~~~~~l~~~~~~lf~~~D~d~dg~i~~~EF~~~ 106 (208)
T 2hpk_A 27 VEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEA 106 (208)
T ss_dssp ---------CHHHHHHHHHCTTCSSEECHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCBTTTBEEGGGHHHH
T ss_pred HHHcCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHH
Confidence 46789999999999999999999999999999999987 3 67889999999 9999999999999999988
Q ss_pred HH
Q 008954 77 MK 78 (547)
Q Consensus 77 ~~ 78 (547)
+.
T Consensus 107 ~~ 108 (208)
T 2hpk_A 107 NR 108 (208)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 394
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=98.12 E-value=4.8e-06 Score=73.64 Aligned_cols=63 Identities=25% Similarity=0.408 Sum_probs=57.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHH--HCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWAL--ADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~--~d~~~~g~l~~~eF~~~~~ 78 (547)
...++.+|+.+|.+++|+|+.+++..++... .++..++..++.. +|.+++|.|+++||+.++.
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 149 (156)
T 1wdc_C 83 FADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVM 149 (156)
T ss_dssp HHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCCcEeHHHHHHHHh
Confidence 4568899999999999999999999999984 4789999999999 9999999999999988764
No 395
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=98.11 E-value=4.7e-06 Score=85.27 Aligned_cols=62 Identities=29% Similarity=0.473 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
.+.++++|+.+|.|++|+|+.+|++.+|.. ..++++++..+++.+|.|+||.|+|+||+.+|
T Consensus 374 eeeLreAFk~fDkDgdG~IS~eELr~vL~~lGe~LSdeEIdeLfke~D~DgDGkIsyeEFvkmM 437 (440)
T 3u0k_A 374 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 437 (440)
T ss_dssp CHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHh
Confidence 356889999999999999999999999988 46889999999999999999999999999876
No 396
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=98.10 E-value=5.8e-06 Score=75.73 Aligned_cols=63 Identities=27% Similarity=0.486 Sum_probs=57.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
+.+..+|+.+|.|++|+|+.+|+..++....++.+++..++..+|.+++|.|+++||..++.-
T Consensus 123 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 185 (191)
T 3khe_A 123 ERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQK 185 (191)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHTTSSCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCcCCHHHHHHHHccCCCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 567899999999999999999999999976789999999999999999999999999988753
No 397
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=98.10 E-value=4e-06 Score=74.43 Aligned_cols=64 Identities=20% Similarity=0.405 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..+.++.+|..+|.|++|+|+.+|+..++... .++.+++..++..+|.+++|.|+++||..++.
T Consensus 93 ~~~~~~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 158 (161)
T 1dtl_A 93 SEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158 (161)
T ss_dssp HHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 35568999999999999999999999999884 47899999999999999999999999998774
No 398
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=98.10 E-value=2.9e-06 Score=78.86 Aligned_cols=63 Identities=22% Similarity=0.411 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC----CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS----KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~----~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.++.+|+.+|.|++|+|+.+|+..++... +++.+++..++..+|.+++|.|+|+||..+|.
T Consensus 128 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~ 194 (197)
T 3pm8_A 128 KEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMS 194 (197)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHH
Confidence 3578999999999999999999999999975 35678899999999999999999999998764
No 399
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=98.09 E-value=3.8e-06 Score=74.12 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
...++.+|+.+|.|++|+|+.+++..++... .++.+++..++..+|. ++|.|+|+||+.++.
T Consensus 84 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~-~dg~I~~~eF~~~~~ 147 (153)
T 2ovk_B 84 EDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPL-KNKQFNYNKMVDIKG 147 (153)
T ss_dssp TTHHHHHHHTTCSSCSSCCCHHHHHHHHHHSSSCCCHHHHHHHHHHCCE-ETTEECHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CCCEEeHHHHHHHHh
Confidence 3468899999999999999999999999984 5789999999999999 999999999998764
No 400
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=98.09 E-value=4.9e-06 Score=79.18 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=62.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC---CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHHHhcCCC
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS---KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSLAQAGRE 88 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~---~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~~q~g~~ 88 (547)
..++.+|+.+|.|++|+|+.+|+..++... +++.+++..++..+|.+++|.|+|+||+.+|.-......+.+
T Consensus 133 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~~~~~~~~~d~ 207 (226)
T 2lvv_A 133 FELTVMFDTMDKDGSLLLELQEFKEALPKLKEWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAVTKKLQVCGDP 207 (226)
T ss_dssp HHHHHHHHHHSCSSCCEECHHHHHHHHHHHHHHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCCCCeEcHHHHHHHHHHHhhcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhcCCCCCCCc
Confidence 478999999999999999999999999874 777777999999999999999999999998876555444444
No 401
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.09 E-value=3.5e-06 Score=73.18 Aligned_cols=61 Identities=21% Similarity=0.391 Sum_probs=48.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
...++.+|..+|.+++|+|+.+++..++... .++.+++..++..+| +++|.|+++||+.++
T Consensus 78 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~ 140 (142)
T 2bl0_C 78 EDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE-TEKGQIRYDNFINTM 140 (142)
T ss_dssp HHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHHC-CSSSEECSHHHHTTT
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CCCCcEeHHHHHHHH
Confidence 3457788888888888888888888888774 467888888888888 888888888887543
No 402
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=98.09 E-value=4.3e-06 Score=74.11 Aligned_cols=62 Identities=29% Similarity=0.469 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
...++.+|+.+|.+++|+|+.+++..++.. ..++.+++..++..+|.+++|.|+++||+.++
T Consensus 90 ~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~ 153 (158)
T 2jnf_A 90 QQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVM 153 (158)
T ss_dssp SSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCSSCCSEECSHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCcCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 345889999999999999999999999998 35789999999999999999999999998765
No 403
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.09 E-value=5e-07 Score=82.25 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=22.7
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHh
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLR 221 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg 221 (547)
+..|..++++|+||||||||++.+++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 45789999999999999999997653
No 404
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=98.09 E-value=6.2e-06 Score=74.41 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCC---CCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLSK---LSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~---l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
+.+.++++|..+|.|++|+|+.+|+..+++..+ ++..++..++..+|.+++|.|+++||..++..
T Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~ef~~~~~~ 72 (172)
T 2znd_A 5 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKY 72 (172)
T ss_dssp -CHHHHHHHHHHCTTCSSCEEHHHHHHHCCCSSSSCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHHH
T ss_pred chhHHHHHHHHhCCCCCCcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 466899999999999999999999999998854 67889999999999999999999999987654
No 405
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=98.09 E-value=3.4e-06 Score=74.34 Aligned_cols=65 Identities=17% Similarity=0.269 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 12 SKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 12 s~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
|+++.+.++++|..+|.|++|+|+.+|+ ..+...+.. +.+..+|..+|.+++|.|+++||..++.
T Consensus 1 s~~~~~~l~~~F~~~D~d~~G~i~~~el-~~l~~~~~~-~~~~~~~~~~D~~~~g~i~~~ef~~~~~ 65 (155)
T 3ll8_B 1 DADEIKRLGKRFKKLDLDNSGSLSVEEF-MSLPELQQN-PLVQRVIDIFDTDGNGEVDFKEFIEGVS 65 (155)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSSBCHHHH-TTSGGGTTC-TTHHHHHHHHCTTCSSSBCHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEcHHHH-HHhhccccc-hHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 5688999999999999999999999999 555553332 3889999999999999999999998774
No 406
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=98.09 E-value=6.8e-06 Score=74.49 Aligned_cols=63 Identities=29% Similarity=0.453 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
...+..+|..+|.|++|+|+.+|+..++... .++.+++..++..+|.+++|.|+++||+.++.
T Consensus 83 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 147 (179)
T 2f2o_A 83 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147 (179)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHC--CCCHHHHHHHHHHHCTTCSSSEEHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 3568889999999999999999999999884 47889999999999999999999999988763
No 407
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=98.08 E-value=6e-06 Score=71.56 Aligned_cols=63 Identities=21% Similarity=0.353 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
....++.+|..+|.|++|+|+.+++..++.. ..++.+++..++..+|. ++|.|+++||+.++.
T Consensus 74 ~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~-~dg~i~~~eF~~~~~ 138 (140)
T 1ggw_A 74 DPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPV-KDGMVNYHDFVQMIL 138 (140)
T ss_dssp CHHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTTC-SSCCSTTTHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CCCcEeHHHHHHHHh
Confidence 3567899999999999999999999999988 46889999999999999 999999999987763
No 408
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.08 E-value=1.4e-05 Score=80.22 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.1
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCC
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCN 223 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~ 223 (547)
..+.+|+|+|++|+||||++..|++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999866
No 409
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=98.08 E-value=5.1e-06 Score=77.06 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 12 SKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 12 s~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
+.++.+.++++|..+|.|++|+|+.+|+..++... .++..++..++..+|.+++|.|+++||..++
T Consensus 32 ~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~ 99 (204)
T 3e3r_A 32 GASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRAL 99 (204)
T ss_dssp --------CHHHHHHCTTCCSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHT
T ss_pred CchhHHHHHHHHHHHccCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 45667789999999999999999999999999984 5688999999999999999999999998765
No 410
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=98.08 E-value=1e-05 Score=71.57 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=57.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 5 PSPITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 5 ~~~~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+..+..+++++.+.++.+|..+|.|++|+|+.+++..++.. ..++..++..++. +++|.|+++||+.++.
T Consensus 6 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~----~~~g~i~~~eF~~~~~ 77 (156)
T 1wdc_B 6 SGVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAPGPLNFTMFLSIFS 77 (156)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHT----TSSSCCCHHHHHHHHH
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH----hCCCcCcHHHHHHHHH
Confidence 44567899999999999999999999999999999999998 4567788888775 4689999999998775
No 411
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=98.07 E-value=5.6e-06 Score=73.27 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=56.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..+..+|..+|.+++|+|+.+++..++... .++.+++..++..+|.+ +|.|+|+||..++.
T Consensus 87 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~-dg~i~~~eF~~~~~ 149 (156)
T 1wdc_B 87 ETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAMIK 149 (156)
T ss_dssp HHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHCCEE-TTEECHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-CCEEeHHHHHHHHh
Confidence 468899999999999999999999999984 57899999999999999 99999999998764
No 412
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=98.07 E-value=1.4e-05 Score=73.70 Aligned_cols=63 Identities=30% Similarity=0.422 Sum_probs=57.7
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
..++.+|+.+|.|++|+|+.+|+..++... .++.+++..++..+|.+++|.|+++||..++..
T Consensus 93 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 157 (191)
T 1y1x_A 93 LSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIF 157 (191)
T ss_dssp HHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 567899999999999999999999999984 478999999999999999999999999988764
No 413
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=98.07 E-value=3.3e-06 Score=75.54 Aligned_cols=62 Identities=23% Similarity=0.304 Sum_probs=47.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..+..+|..+|.+++|+|+.+++..++...+++.+++..++..+|.+++|.|+++||..++.
T Consensus 99 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 160 (166)
T 2aao_A 99 DHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIEELMRDVDQDNDGRIDYNEFVAMMQ 160 (166)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHHHHHTCC--------CCHHHHHCTTCSSSBCHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 56788899999999999999999999888778888888899999999999999999987763
No 414
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.06 E-value=2e-05 Score=78.15 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=42.7
Q ss_pred cceEEcCCCCCC--hhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCe-EEEEeccCCCc
Q 008954 289 QVTFVDTPGVLS--GEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDK-IRVVLNKADQV 365 (547)
Q Consensus 289 ~l~lvDTPG~~~--~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~-iivVlNK~D~~ 365 (547)
.+.|+||||... ........ ...+ ..+..+|.+++++|+.. + .+..+.++.+... .+ ..+|+||+|..
T Consensus 182 D~ViIDTpg~~~~~~~~~l~~e---l~~i--~~~~~~d~vllVvda~~-g--~~~~~~~~~~~~~-~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 182 EIIIVDTAGRHGYGEEAALLEE---MKNI--YEAIKPDEVTLVIDASI-G--QKAYDLASKFNQA-SKIGTIIITKMDGT 252 (297)
T ss_dssp SEEEEECCCSCCTTCHHHHHHH---HHHH--HHHHCCSEEEEEEEGGG-G--GGHHHHHHHHHHT-CTTEEEEEECGGGC
T ss_pred CEEEEeCCCCcccccHHHHHHH---HHHH--HHHhcCCEEEEEeeCCc-h--HHHHHHHHHHHhh-CCCCEEEEeCCCCC
Confidence 689999999986 32111110 0001 12457999999999864 2 2334445555442 44 77899999987
Q ss_pred Ch
Q 008954 366 DT 367 (547)
Q Consensus 366 ~~ 367 (547)
..
T Consensus 253 ~~ 254 (297)
T 1j8m_F 253 AK 254 (297)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 415
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=98.06 E-value=4.7e-06 Score=77.45 Aligned_cols=66 Identities=23% Similarity=0.408 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC-C--CCHHHHHHHHHH----HCCCCCCccCHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIADSDGDGRITGNDATKFLGLS-K--LSRQELKQIWAL----ADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-~--l~~~~l~~i~~~----~d~~~~g~l~~~eF~~~~~ 78 (547)
....+.++.+|+.+|.|++|+|+.+|+..++... + ++.+++..++.. +|.|++|.|+++||+.++.
T Consensus 110 ~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 182 (202)
T 2bec_A 110 NSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLE 182 (202)
T ss_dssp TSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTT
T ss_pred ccHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 3456789999999999999999999999999985 5 688888888888 9999999999999998764
No 416
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=98.06 E-value=2.2e-06 Score=75.38 Aligned_cols=62 Identities=21% Similarity=0.457 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
..+.+..+|..+|.+++|+|+.+++..++... .++.+++..++..+| +++|.|+++||+.++
T Consensus 85 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~ 148 (151)
T 1w7j_B 85 TYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHE-DSNGCINYEAFLKHI 148 (151)
T ss_dssp ---CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCC-CTTSEEEHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCCCeEeHHHHHHHH
Confidence 34567889999999999999999999999985 478999999999999 999999999998765
No 417
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=98.06 E-value=8.3e-06 Score=73.72 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh----------CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 14 EHQKIYREWFDIADSDGDGRITGNDATKFLGL----------SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 14 ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~----------~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
++.+.++++|..+| +++|.|+.+|+..+++. .+++..++..++..+|.+++|.|+++||..++..
T Consensus 1 e~~~~l~~~F~~~D-d~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~ 75 (173)
T 1alv_A 1 EEVRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNN 75 (173)
T ss_dssp CHHHHHHHHHHHHH-GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred CchhHHHHHHHHHh-CCCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcCCCCCccCHHHHHHHHHH
Confidence 36788999999999 99999999999999987 3567889999999999999999999999987754
No 418
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=98.06 E-value=7.4e-06 Score=74.73 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=54.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCC--------CccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQ--------GFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~--------g~l~~~eF~~~~~ 78 (547)
+.++.+|..+|.|++|+|+.+|+..++...+++.+++..++..+|.+++ |.|+|+||...|.
T Consensus 108 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~G~i~~~eF~~~l~ 177 (180)
T 3mse_B 108 TFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDYML 177 (180)
T ss_dssp CHHHHHHHHHCTTCSSCBCHHHHHHHTTTSSCCHHHHHHHHHHHHTC---------CCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHcCCCCCHHHHHHHHHHhhhccCcccccccCCeeeHHHHHHHHH
Confidence 5788999999999999999999999999878899999999999999888 8999999987663
No 419
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=98.05 E-value=1.6e-05 Score=71.63 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=57.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
..++.+|..+|.+++|+|+.+|+..++... .++.+++..++..+|.+++|.|+++||..++...
T Consensus 74 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~~ 139 (172)
T 2znd_A 74 TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVL 139 (172)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 567889999999999999999999999884 4788999999999999999999999999877543
No 420
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=98.04 E-value=7.7e-06 Score=75.17 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=50.6
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 21 EWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 21 ~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
.+|+.+|.|++|+|+.+|+..++.. ..++.+++..++..+|.|++|.|+++||+.++.-
T Consensus 117 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 177 (195)
T 1qv0_A 117 AVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLG 177 (195)
T ss_dssp HHHHHTC----CEECHHHHHHHHHHHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence 8999999999999999999999988 4568999999999999999999999999987753
No 421
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=98.04 E-value=1.2e-05 Score=76.18 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=56.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVS 81 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~ 81 (547)
+.++.+|..+|.|++|+|+.+|+..++.. ..++.+++..+++.+| +++|.|+++||+.++..+.
T Consensus 117 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~l~ 182 (220)
T 3sjs_A 117 ELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFA-RGMAFCDLNCWIAICAFAA 182 (220)
T ss_dssp HHHHHHHHHHCCSSTTEECHHHHHHHHHHHTCCCCHHHHHHHHHHHC---CCSEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHHH
Confidence 56789999999999999999999999998 4678999999999999 9999999999998876553
No 422
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=98.03 E-value=4e-06 Score=77.80 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
...+..+|..+|.|++|+|+.+++..+| .. .++..++..++..+|.|++|.|+|+||+.+|.
T Consensus 125 ~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~ 188 (196)
T 3dtp_E 125 EDVIVNAFNLFDEGDGKCKEETLKRSLT-TWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILT 188 (196)
T ss_dssp HHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSSCCCHHHHHHHHHSSCEETTEECHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCCCCHHHHHHHHHHcCCCCCCEEeHHHHHHHHH
Confidence 3568899999999999999999999999 84 58899999999999999999999999998763
No 423
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=98.03 E-value=8.7e-06 Score=75.15 Aligned_cols=63 Identities=27% Similarity=0.414 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC----CCCH---HHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS----KLSR---QELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~----~l~~---~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.++.+|+.+|.|++|+|+.+|+..++... .++. +++..++..+|.|++|.|+++||..+|.
T Consensus 121 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 190 (191)
T 3k21_A 121 KKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMMK 190 (191)
T ss_dssp HHHHHHHHHHHSTTCSSCBCHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHHHHHc
Confidence 3568899999999999999999999999872 3454 4689999999999999999999998764
No 424
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=98.03 E-value=1.3e-05 Score=73.95 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
..+++ .+.++++|..+|.|++|+|+.+|+..++... .++..++..++..+|.+++|.|+++||..++..
T Consensus 21 ~~~~~--~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~ 91 (191)
T 1y1x_A 21 RHMND--NQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHF 91 (191)
T ss_dssp CSSCT--TSCHHHHHHHHCTTCSSSBCHHHHHHHHCBTTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred cccCC--HHHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 34444 5679999999999999999999999999663 568899999999999999999999999987754
No 425
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=98.03 E-value=8.9e-06 Score=74.41 Aligned_cols=59 Identities=24% Similarity=0.356 Sum_probs=54.7
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 20 REWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 20 ~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.+|+.+|.|++|+|+.+|+..++.. ..++.+++..++..+|.+++|.|+++||+.++.
T Consensus 112 ~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~~~~ 172 (191)
T 1uhk_A 112 DALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL 172 (191)
T ss_dssp HHHHHHHCTTCSSEECHHHHHHHHHHHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 38999999999999999999999988 357899999999999999999999999998876
No 426
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=98.03 E-value=1.4e-05 Score=70.38 Aligned_cols=65 Identities=28% Similarity=0.391 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhh---CCCCHHHHHHHHHH----HCCCCCCccCHHHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGL---SKLSRQELKQIWAL----ADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~---~~l~~~~l~~i~~~----~d~~~~g~l~~~eF~~~~~lv 80 (547)
.+.++.+|+.+|.|++|+|+.+|+..++.. ..++..++..++.. +|.+++|.|+++||..++.-+
T Consensus 74 ~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 145 (155)
T 3ll8_B 74 EQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGL 145 (155)
T ss_dssp HHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 467889999999999999999999999977 35778888888877 999999999999998877533
No 427
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=98.02 E-value=3e-06 Score=75.33 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHhhhC--CCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIAD--SDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D--~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+|+++.+.++++|..+| .+++|+|+.+++..+++.. .++..++..++..+|.+ +|.|+++||+.++.
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~d~~-~g~i~~~eF~~~~~ 73 (159)
T 2ovk_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMG-EKAYKLEEILPIYE 73 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHTTCCSSTT-SCEEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-CCeEcHHHHHHHHH
Confidence 689999999999999999 9999999999999999984 56889999999999875 69999999987764
No 428
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.02 E-value=9.4e-07 Score=83.15 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=67.6
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCcccceeEEEEeCCCccccCCceeeecCCCCCCCccccccchhhh
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFGGAFLSK 276 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 276 (547)
..|.+++|+|++|||||||++.|+|. .| ..|.. . ...+..... ........+++.. ...+..+.......
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I-~---~~~~~~~~~-~~~~~ig~v~q~~--~enl~~~~~~~~~~ 89 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQV-S---RIILTRPAV-EAGEKLGFLPGTL--NEKIDPYLRPLHDA 89 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSC-S---EEEEEECSC-CTTCCCCSSCC--------CTTTHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCee-e---eEEecCCch-hhhcceEEecCCH--HHHHHHHHHHHHHH
Confidence 45788999999999999999999998 42 11111 1 111111111 1111223333321 11110000000000
Q ss_pred hhhhcccccccccceEEcCCCCCChhhhhhhcccChHHHHHHHhhcCCeEEEEecCCCCCCCHHHHHHHHHHhCCCCeEE
Q 008954 277 FECSQMSHPLLDQVTFVDTPGVLSGEKQRTQRTYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIR 356 (547)
Q Consensus 277 ~~~~~~~~~ll~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~aD~illv~d~~~~~~~~~~~~ll~~l~~~~~~ii 356 (547)
.... ..... --.+++. |+ |++|++. ++++++.+++++|++-.... ......+++..+ ..+..++
T Consensus 90 ~~~~-~~~~~--~~~~l~~-gl--Gq~qrv~-------lAraL~~~p~lllLDEPts~--~~~~l~~~l~~l-~~g~tii 153 (208)
T 3b85_A 90 LRDM-VEPEV--IPKLMEA-GI--VEVAPLA-------YMRGRTLNDAFVILDEAQNT--TPAQMKMFLTRL-GFGSKMV 153 (208)
T ss_dssp HTTT-SCTTH--HHHHHHT-TS--EEEEEGG-------GGTTCCBCSEEEEECSGGGC--CHHHHHHHHTTB-CTTCEEE
T ss_pred HHHh-ccHHH--HHHHHHh-CC--chHHHHH-------HHHHHhcCCCEEEEeCCccc--cHHHHHHHHHHh-cCCCEEE
Confidence 0000 00000 0012233 44 6667665 78888999999999833222 345556666666 4466777
Q ss_pred EEeccCCCcC
Q 008954 357 VVLNKADQVD 366 (547)
Q Consensus 357 vVlNK~D~~~ 366 (547)
+.+..+.+.
T Consensus 154 -vtHd~~~~~ 162 (208)
T 3b85_A 154 -VTGDITQVD 162 (208)
T ss_dssp -EEEC-----
T ss_pred -EECCHHHHh
Confidence 877766553
No 429
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=98.02 E-value=7.3e-06 Score=71.23 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 11 CSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 11 ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+|+++.+.++.+|..+|.|++|+|+.+++..+++.. .++..++..++.. ++|.|+++||..++.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~----~~g~i~~~eF~~~~~ 66 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE----APGPINFTMFLTMFG 66 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT----SSSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHH
Confidence 588999999999999999999999999999999984 4567777777665 789999999998775
No 430
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=98.02 E-value=3.2e-06 Score=78.55 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+++++.+.++++|..+|.|++|+|+.+|+..+ ...+.... +..++..+|.+++|.|+++||+.++.
T Consensus 22 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~~lg~~~~-~~~l~~~~D~d~dg~i~~~EF~~~~~ 88 (202)
T 2bec_A 22 GFSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GALAVNPL-GDRIIESFFPDGSQRVDFPGFVRVLA 88 (202)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-HHHHHSTT-HHHHHHTTSCSSCCCCCHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-HhcCCCcc-HHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999999999999998 55333222 89999999999999999999998764
No 431
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=98.02 E-value=1.4e-05 Score=71.44 Aligned_cols=71 Identities=18% Similarity=0.333 Sum_probs=61.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC---CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 5 PSPITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS---KLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 5 ~~~~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~---~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
+..+..+++++.+.++.+|..+|.|++|+|+.+|+..++... .++..++..++... +|.|+++||..++..
T Consensus 13 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~----dg~i~~~eF~~~~~~ 86 (166)
T 2mys_B 13 SNVFSMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA----SGPINFTVFLTMFGE 86 (166)
T ss_pred chhhhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHC----CCCcCHHHHHHHHHH
Confidence 334567899999999999999999999999999999999984 55778888888864 689999999987753
No 432
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=98.01 E-value=1.1e-05 Score=70.58 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
...++.+|+.+|.|++|+|+.+++..++... .++.+++..++..+ +++|.|+|+||..+|
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~l 144 (146)
T 2qac_A 83 VEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF--SSEDNIDYKLFCEDI 144 (146)
T ss_dssp HHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH--CSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc--CCCCcCcHHHHHHHH
Confidence 4568899999999999999999999999984 57899999999999 899999999998776
No 433
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.01 E-value=1.2e-05 Score=83.89 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.3
Q ss_pred cEEEEeeCCCCChhHHHHHHHhC
Q 008954 200 PMVMLLGQYSTGKTTFIKHLLRC 222 (547)
Q Consensus 200 ~~V~lvG~~~aGKSTLiN~Llg~ 222 (547)
-+|+|+|++++|||||+|.|+|.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 46999999999999999999986
No 434
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=98.00 E-value=9.8e-06 Score=71.44 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=60.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 6 SPITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 6 ~~~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
+....+++++.+.++.+|..+|.|++|+|+.+++..+++.. .++..++..++..+ +|.|+++||..++
T Consensus 5 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~----~g~i~~~eF~~~~ 74 (153)
T 2ovk_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC----PGQLNFTAFLTLF 74 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS----SSCCCSHHHHHTT
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCCCCHHHHHHHH
Confidence 34678999999999999999999999999999999999984 56788999999887 7899999998765
No 435
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=97.99 E-value=1.6e-05 Score=82.95 Aligned_cols=70 Identities=27% Similarity=0.450 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..+++++.+.++++|..+|.|++|.|+.+|+..+|.. ..++.+++..+++.+|.+++|.|+++||..++.
T Consensus 304 ~~ls~eei~el~~~F~~fD~D~dG~Is~~EL~~~L~~lg~~~s~eel~~Lf~~~D~DgdG~IsfeEFl~ll~ 375 (450)
T 3sg6_A 304 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA 375 (450)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTSSSSEEHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 4788999999999999999999999999999999998 457889999999999999999999999998774
No 436
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=97.98 E-value=3.6e-06 Score=77.16 Aligned_cols=66 Identities=24% Similarity=0.383 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC-------------CCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 12 SKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS-------------KLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 12 s~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-------------~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
++++...++.+|..+|.|++|.|+.+|+..++... .++..++..+|..+|.+++|.|+++||..++
T Consensus 35 ~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~ef~~~~ 113 (191)
T 3khe_A 35 TLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVC 113 (191)
T ss_dssp CTTTTHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTCTTCSSSEEHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence 67788999999999999999999999999999863 2456789999999999999999999999876
No 437
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=97.97 E-value=1.3e-05 Score=73.09 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=54.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC----C--CCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS----K--LSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~----~--l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
..++.+|+.+| |++|+|+.+|++.+++.. + ++.+++..++..+| +++|.|+|+||+.++.-
T Consensus 76 ~~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~~d-d~dG~I~~~EF~~~~~~ 142 (174)
T 2i7a_A 76 VHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS-DSVGRVSFPSLVCFLMR 142 (174)
T ss_dssp HHHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHHHHS-CTTSEECHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHc-CCCCeEcHHHHHHHHHH
Confidence 56789999999 999999999999999876 5 57889999999999 99999999999987653
No 438
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.96 E-value=3.7e-06 Score=95.40 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=28.7
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCN 223 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~ 223 (547)
.+.+.+|. .|.+++|+|+||+|||||++.|+|-.
T Consensus 450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45555555 89999999999999999999999744
No 439
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=97.96 E-value=1.3e-05 Score=74.98 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhh---CCCCHHHHHHH----HHHHCCCCCCccCHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGL---SKLSRQELKQI----WALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~---~~l~~~~l~~i----~~~~d~~~~g~l~~~eF~~~~ 77 (547)
..+.++.+|..+|.|++|+|+.+|+..++.. ..++.+++..+ +..+|.|++|.|+++||+.++
T Consensus 111 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~~ 180 (208)
T 2ct9_A 111 RSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180 (208)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 5678999999999999999999999999987 24788888887 999999999999999998765
No 440
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=97.96 E-value=1.4e-05 Score=73.94 Aligned_cols=69 Identities=25% Similarity=0.365 Sum_probs=60.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 6 SPITFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 6 ~~~~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.....+++++...++.+|..+|.|++|+|+..++..+|... .++..++..++..+ +|.|+|++|+.++.
T Consensus 46 ~~~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~----~g~i~~~eF~~~~~ 116 (196)
T 3dtp_E 46 NVFAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEA----PGPINFTMFLTIFG 116 (196)
T ss_dssp CSSCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHTTS----SSCCBHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHc----cCCCcHHHHHHHHH
Confidence 33567899999999999999999999999999999999984 56788888888876 78999999998764
No 441
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=97.95 E-value=1.7e-06 Score=75.84 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHH-CCCCCCccCHHHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALA-DSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~-d~~~~g~l~~~eF~~~~~lv 80 (547)
.+.++++|..+|.|++|+|+.+|+..++... .++..++..++..+ |.+++|.|+++||..++...
T Consensus 3 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~~D~~~~g~i~~~eF~~~~~~~ 70 (148)
T 1m45_A 3 TRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVN 70 (148)
T ss_dssp CCCCTTCHHHHCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHC--CC--CCEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCeEcHHHHHHHHHHH
Confidence 4457789999999999999999999999984 56788999999999 99999999999999887644
No 442
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=97.95 E-value=1e-05 Score=68.99 Aligned_cols=60 Identities=23% Similarity=0.349 Sum_probs=54.0
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 19 YREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 19 ~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
++++|..+|.+++|+|+.+|+..++... .++.+.+..+|+.+|.+++|.|+++||..++.
T Consensus 2 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~ 63 (134)
T 1jfj_A 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63 (134)
T ss_dssp HHHHHHHHCTTCSSEEEHHHHHHHHHTTCCSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCeEcHHHHHHHHH
Confidence 6789999999999999999999999884 45677899999999999999999999987663
No 443
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.95 E-value=6.1e-06 Score=86.93 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=25.9
Q ss_pred CCCCcEEEEeeCCCCChhHHHHHHHhCC
Q 008954 196 FDAKPMVMLLGQYSTGKTTFIKHLLRCN 223 (547)
Q Consensus 196 ~~~g~~V~lvG~~~aGKSTLiN~Llg~~ 223 (547)
+..|++|+|+|++|||||||++.|+|..
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3478999999999999999999999987
No 444
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=97.95 E-value=2e-05 Score=73.35 Aligned_cols=69 Identities=23% Similarity=0.273 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHhhhCCC--CCCcccHHHHHHHHhh-CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSD--GDGRITGNDATKFLGL-SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~--~~G~Is~~e~~~~l~~-~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+++++.+.+..+|..+|.| ++|+|+.+|+..++.. .......+.+++..+|.+++|.|++.||..++.
T Consensus 30 ~~s~~~~~~l~~~F~~~D~d~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~ 101 (207)
T 2ehb_A 30 PFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLG 101 (207)
T ss_dssp SCCHHHHHHHHHHHHHHTTSSSCSSCEEHHHHHHHHHSCTTCCCHHHHHHHHHHCTTCSSEECHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHhccccccHHHHHHHHHHhcCCCCCeEeHHHHHHHHH
Confidence 57889999999999999999 9999999999999987 223345678899999999999999999988775
No 445
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.94 E-value=1.3e-05 Score=69.74 Aligned_cols=62 Identities=27% Similarity=0.353 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 11 CSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 11 ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+|++| ++.+|..+|.|++|+|+.+|+..++... .++..++..++.. +++|.|+++||..++.
T Consensus 2 ls~~e---l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~---~~~g~i~~~eF~~~~~ 65 (145)
T 2bl0_B 2 ASADQ---IQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQ---LNAKEFDLATFKTVYR 65 (145)
T ss_dssp CCHHH---HHHHHHHHCTTCSSCEEGGGHHHHHHHTTCCCCHHHHHHHHHH---HTSSEECHHHHHHHHT
T ss_pred CCHHH---HHHHHHHhCCCCcCccCHHHHHHHHHHhCCCCCHHHHHHHHHh---cCCCeEcHHHHHHHHH
Confidence 67776 9999999999999999999999999984 4678889999888 7889999999988764
No 446
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=97.94 E-value=3.9e-06 Score=77.82 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC-------CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 11 CSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS-------KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 11 ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-------~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
.++++.+++++ |..+|.|++|+|+.+|+..+++.. .++..++..++..+|.+++|.|+++||..++..+
T Consensus 27 ~~~~~~~~l~~-F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~eF~~~~~~~ 102 (198)
T 1juo_A 27 FPGQTQDPLYG-YFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL 102 (198)
T ss_dssp CTTCCCCTTHH-HHHHHHTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH
T ss_pred CCccccHHHHH-HHHHhCCCCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCCCCCeECHHHHHHHHHHH
Confidence 56667788999 999999999999999999999983 3588999999999999999999999999887643
No 447
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=97.92 E-value=3.3e-06 Score=77.83 Aligned_cols=60 Identities=23% Similarity=0.278 Sum_probs=51.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 18 IYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 18 ~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
.++.+|..+|.|++|+|+.+|+..++...+++.+++..++..+|.+++|.|+++||+.++
T Consensus 83 ~l~~~F~~~D~d~dG~Is~~El~~~l~~~g~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~ 142 (188)
T 1s6i_A 83 NLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMM 142 (188)
T ss_dssp STHHHHHHTTTTCSSEEEHHHHHHTTTTTTCCTTHHHHHHHHHCSSSSSEEETTHHHHTT
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 467889999999999999999999888877888888889999999999999999998765
No 448
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=97.90 E-value=2.5e-05 Score=74.11 Aligned_cols=70 Identities=24% Similarity=0.290 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHhhhCCC--CCCcccHHHHHHHHhh-CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSD--GDGRITGNDATKFLGL-SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~--~~G~Is~~e~~~~l~~-~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
.+++++.+.+..+|..+|.| ++|+|+.+|+..++.. .......+.+++..+|.+++|.|+++||..++..
T Consensus 41 ~ls~~ei~~l~~~F~~~D~d~~~~G~I~~~El~~~l~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~ 113 (226)
T 2zfd_A 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSV 113 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSSCSSSBCHHHHHHHHHSCSSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCCeEcHHHHHHHHhccCcccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH
Confidence 57899999999999999999 9999999999999987 2223456788999999999999999999887753
No 449
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=97.90 E-value=3.3e-05 Score=71.71 Aligned_cols=71 Identities=17% Similarity=0.352 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHhhhCCC-CCCcccHHHHHHHHhhCC--CCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSD-GDGRITGNDATKFLGLSK--LSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~-~~G~Is~~e~~~~l~~~~--l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
..|.-+.+.++++|..+|.+ ++|+|+.+|+..++...+ .+...+..+|..+|.+++|.|+++||..++..+
T Consensus 15 ~~t~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~ 88 (204)
T 1jba_A 15 AVGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLV 88 (204)
T ss_dssp SCCHHHHHHHHHHHHHHHSSSTTCCEEHHHHHHHHHCCSSSTTHHHHHHHHHHHCCSSSSEECHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHH
Confidence 34556778899999999999 899999999999999854 567889999999999999999999999887643
No 450
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=97.90 E-value=1.3e-05 Score=75.79 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC---CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS---KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLVSL 82 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~---~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv~~ 82 (547)
.+.++.+|..+|.|++|+|+.+|+..++... .++.+++..++..+|.|++|.|+|+||+.++.-...
T Consensus 129 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~ 198 (219)
T 3cs1_A 129 FFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASAVKL 198 (219)
T ss_dssp HHHHHHHHHTTCSSSSSEEEHHHHHHHHHHHHHHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhcccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHhCC
Confidence 3568999999999999999999999999872 678888999999999999999999999988865433
No 451
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=97.89 E-value=1.9e-05 Score=67.27 Aligned_cols=59 Identities=29% Similarity=0.409 Sum_probs=29.8
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHh---h--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 19 YREWFDIADSDGDGRITGNDATKFLG---L--SKLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 19 ~~~~F~~~D~~~~G~Is~~e~~~~l~---~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
+..+|+.+|.+++|.|+.+|+..++. . ...+..++..+|+.+|.+++|.|+++||..++
T Consensus 38 ~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l 101 (134)
T 1jfj_A 38 LQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFF 101 (134)
T ss_dssp HHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHcCCCCCeEcHHHHHHHHHHhcccccCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Confidence 44555555555555555555555553 1 11123345555555555555555555555443
No 452
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=97.88 E-value=1.8e-05 Score=84.65 Aligned_cols=68 Identities=21% Similarity=0.398 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC----------CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 11 CSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS----------KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 11 ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~----------~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+++++.+.++++|+.+|.|++|.|+.+|+..++... ..+..++..++..+|.|++|.|+++||..++.
T Consensus 349 ~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~ 426 (504)
T 3q5i_A 349 TTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCM 426 (504)
T ss_dssp SCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHCTTCSSSEEHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHeeCCCCCCeEcHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 488999999999999999999999999999988773 34578899999999999999999999988764
No 453
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=97.88 E-value=1.5e-05 Score=75.05 Aligned_cols=63 Identities=30% Similarity=0.447 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC-------CCCHHHHHH----HHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS-------KLSRQELKQ----IWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-------~l~~~~l~~----i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.++.+|+.+|.|++|+|+.+|+..++... .++.+++.. ++..+|.|++|.|+++||..++.
T Consensus 128 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~~~~~~~~s~~e~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 201 (214)
T 2l4h_A 128 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS 201 (214)
T ss_dssp HHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHSSSCTTCSCTHHHHHHHHHHHHHCCSCCSSBCSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 3578999999999999999999999999872 466666654 89999999999999999998764
No 454
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=97.87 E-value=2.5e-05 Score=82.90 Aligned_cols=63 Identities=22% Similarity=0.440 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.+..+|+.+|.|++|+|+.+|+..++...+++.+++..+++.+|.|+||.|+++||..+|.
T Consensus 417 ~~~~~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~ 479 (484)
T 3nyv_A 417 RERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLL 479 (484)
T ss_dssp HHHHHHHHHHHCTTCCSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCCSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 357889999999999999999999999998888999999999999999999999999998775
No 455
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=97.87 E-value=1.3e-05 Score=73.03 Aligned_cols=62 Identities=31% Similarity=0.449 Sum_probs=53.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC-------CCCHHHHHH----HHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS-------KLSRQELKQ----IWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-------~l~~~~l~~----i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.++.+|+.+|.|++|+|+.+|+..++... .++.+++.. ++..+|.+++|.|+++||..++.
T Consensus 98 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~ 170 (183)
T 1dgu_A 98 IKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS 170 (183)
T ss_dssp HHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTSSSEEEHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 578999999999999999999999999873 245666665 89999999999999999987763
No 456
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=97.85 E-value=3.6e-05 Score=69.44 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=55.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
..++.+|..+|.+++|+|+..|+..++.. ..++..++..++..+| +++|.|+++||..++.-
T Consensus 77 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-d~dg~i~~~eF~~~~~~ 140 (173)
T 1alv_A 77 KKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS-DEGGNMDFDNFISCLVR 140 (173)
T ss_dssp HHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHHHT-CSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHH
Confidence 45788999999999999999999999988 4578899999999999 99999999999987753
No 457
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=97.85 E-value=1.5e-06 Score=72.20 Aligned_cols=63 Identities=29% Similarity=0.369 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC-----CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS-----KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-----~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.++.+|+.+|.|++|+|+.+++..++... .++.+++..++..+|.+++|.|+++||+.++.
T Consensus 40 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 107 (108)
T 2kyc_A 40 SSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEMVQ 107 (108)
T ss_dssp SSSHHHHCSSSCSCCSSCCCGGGTTTSHHHHSSSCCCCCTTTTHHHHTTTCCSSSSCCCSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHh
Confidence 3467899999999999999999999998863 36778899999999999999999999987663
No 458
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=97.84 E-value=2e-05 Score=84.23 Aligned_cols=64 Identities=27% Similarity=0.555 Sum_probs=59.3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
+.++.+|+.+|.|++|+|+.+|+..++...+++.+++.+++..+|.|+||.|+++||..+|.-.
T Consensus 435 ~~~~~~F~~~D~d~dG~Is~~El~~~l~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~ 498 (504)
T 3q5i_A 435 ERLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKI 498 (504)
T ss_dssp HHHHHHHHHHCTTCCSEECHHHHHHHTTCSCCCHHHHHHHHHTTCSSCSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence 5688999999999999999999999999888999999999999999999999999999888644
No 459
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=97.83 E-value=5.4e-05 Score=69.20 Aligned_cols=62 Identities=21% Similarity=0.374 Sum_probs=54.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhh--------------CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGL--------------SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--------------~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.++.+|..+|.|++|+|+.+|+..++.. ...+...+..+|..+|.+++|.|+++||..++.
T Consensus 99 ~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 174 (190)
T 2l2e_A 99 DKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSK 174 (190)
T ss_dssp HHHHHHHHHHCTTSCSCBCHHHHHHHHHHHHHHHHHHSCCCSSCCCTHHHHHHHHHHHTCCSSCCBCHHHHHHHHH
T ss_pred HHHHHHHhHccCCCCCcCcHHHHHHHHHHHHHHhccccCcccccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 46788999999999999999999998876 135788899999999999999999999998764
No 460
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.83 E-value=4.1e-06 Score=92.93 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=41.7
Q ss_pred CCCCCCh-hhhhhhcccChHHHHHHHhhcCC---eEEEE--ecCCCCCCCHHHHHHHHHHhCCCCeEEEEeccC
Q 008954 295 TPGVLSG-EKQRTQRTYDFTGVISWFAAKCD---LILLL--FDPHKLDISDEFKRVIASLRGNDDKIRVVLNKA 362 (547)
Q Consensus 295 TPG~~~~-~~~~~~~~~~~~~~~~~~~~~aD---~illv--~d~~~~~~~~~~~~ll~~l~~~~~~iivVlNK~ 362 (547)
.|+-+|+ ++|++. ++++++.+++ ++|++ +.+.++....+..++++.+.+.+..+++|-+-.
T Consensus 540 ~~~~LSgG~~qrv~-------iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~ 606 (670)
T 3ux8_A 540 PATTLSGGEAQRVK-------LAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 606 (670)
T ss_dssp CGGGCCHHHHHHHH-------HHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CchhCCHHHHHHHH-------HHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3455665 667665 8999988775 88888 444443344566778888876788888876643
No 461
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=97.82 E-value=4.4e-05 Score=70.63 Aligned_cols=70 Identities=26% Similarity=0.289 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC---------CCCHHHHHHHHHHHCC-CCCCccCHHHHHHHHHHHH
Q 008954 12 SKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS---------KLSRQELKQIWALADS-KRQGFLDLAEFVTAMKLVS 81 (547)
Q Consensus 12 s~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~---------~l~~~~l~~i~~~~d~-~~~g~l~~~eF~~~~~lv~ 81 (547)
+....+.+..+|..+|.|++|+|+.+|+..++... ..+.+.+..++..+|. +++|.|+++||...+.-+.
T Consensus 104 ~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~dg~Is~~EF~~~~~~~~ 183 (204)
T 3e3r_A 104 SQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVS 183 (204)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHCCCTTCHHHHTTSSCHHHHHHHHHHHHSCSSCCSCEEHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCcCCCCeEeHHHHHHHHccccCCccccCCCChHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHcC
Confidence 44556789999999999999999999999999842 2456779999999998 9999999999999887654
No 462
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=97.82 E-value=2.9e-05 Score=73.89 Aligned_cols=62 Identities=19% Similarity=0.376 Sum_probs=54.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC--------------CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS--------------KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--------------~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.++.+|+.+|.|++|+|+.+|+..++... .++...+..++..+|.|++|.|+++||..++.
T Consensus 138 ~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~ 213 (229)
T 3dd4_A 138 EKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQ 213 (229)
T ss_dssp HHHHHHHHHHCTTCSSCCBHHHHHHHHHHHHHHCC-----------CCTHHHHHHHHHCSSCSSBCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCCCCCcEeHHHHHHHHH
Confidence 568899999999999999999999999762 34667899999999999999999999998765
No 463
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.80 E-value=1.7e-05 Score=90.09 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=29.8
Q ss_pred ccCCCCCC--CCcEEEEeeCCCCChhHHHHHHHhCC
Q 008954 190 FLTNSDFD--AKPMVMLLGQYSTGKTTFIKHLLRCN 223 (547)
Q Consensus 190 ~~~~~~~~--~g~~V~lvG~~~aGKSTLiN~Llg~~ 223 (547)
.+.+.++. .|.+++|+|+||+|||||++.|+|..
T Consensus 688 iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45665554 89999999999999999999999987
No 464
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=97.80 E-value=4.2e-05 Score=67.92 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhh------CCCCHHHHHH-----------HHHHHCCCCCCccCHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGL------SKLSRQELKQ-----------IWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~------~~l~~~~l~~-----------i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
+.+.++.+|..+|.|++|+|+.+|+..++.+ ..++..++.. ++..+|.+++|.|+++||..++
T Consensus 2 ~~~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~ 81 (166)
T 3akb_A 2 YERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFVTGA 81 (166)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSSSCEEHHHHHHTH
T ss_pred HHHHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4678999999999999999999999997642 3455555554 4699999999999999999876
Q ss_pred HHH
Q 008954 78 KLV 80 (547)
Q Consensus 78 ~lv 80 (547)
...
T Consensus 82 ~~~ 84 (166)
T 3akb_A 82 VKR 84 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 465
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.78 E-value=4.8e-05 Score=75.73 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=24.2
Q ss_pred CCCcEEEEeeCCCCChhHHHHHHHhCC
Q 008954 197 DAKPMVMLLGQYSTGKTTFIKHLLRCN 223 (547)
Q Consensus 197 ~~g~~V~lvG~~~aGKSTLiN~Llg~~ 223 (547)
..+.+|+++|++|+||||++..|++..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 356789999999999999999999876
No 466
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=97.78 E-value=3.7e-05 Score=69.85 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=47.7
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC----C------CC----HHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS----K------LS----RQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~----~------l~----~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
+.++.+|+.+|.|++|+|+.+|+..++... | ++ .+.+..+++.+|.+++|.|+++||..++
T Consensus 92 ~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~ 166 (183)
T 1s6c_A 92 EKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESX 166 (183)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 457788888888888899988888888652 3 33 3678888888888888889998888765
No 467
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=97.78 E-value=3.3e-05 Score=71.76 Aligned_cols=62 Identities=26% Similarity=0.385 Sum_probs=53.7
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC----C---------------CCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS----K---------------LSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~----~---------------l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
+.++.+|+.+|.|++|+|+.+|+..++... | .+.+.+..+|..+|.+++|.|+++||..++
T Consensus 95 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~ 174 (204)
T 1jba_A 95 HKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGA 174 (204)
T ss_dssp HHHHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCccccccccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 357889999999999999999999998763 2 455789999999999999999999999876
Q ss_pred H
Q 008954 78 K 78 (547)
Q Consensus 78 ~ 78 (547)
.
T Consensus 175 ~ 175 (204)
T 1jba_A 175 R 175 (204)
T ss_dssp T
T ss_pred H
Confidence 4
No 468
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=97.77 E-value=6.4e-05 Score=69.37 Aligned_cols=66 Identities=24% Similarity=0.306 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 13 KEHQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 13 ~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.+.+.+..+|..+|.|++|.|+..|+..++.. .+.+...+..+|..+|.+++|.|+++||..++.
T Consensus 48 ~~~~~~~~~~f~~~D~d~~G~I~~~Ef~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~Ef~~~~~ 115 (198)
T 2r2i_A 48 PSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIK 115 (198)
T ss_dssp HHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHSSCCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHccCchHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 333444555666666666666666666555554 233445555566666666666666666655543
No 469
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A
Probab=97.77 E-value=4.6e-05 Score=69.37 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=55.2
Q ss_pred HHHHHHH--hhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 17 KIYREWF--DIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 17 ~~~~~~F--~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
+.+...| ..+|.|++|+|+.+|+..++... .++.+++..++..+|.+++|.|+++||..++.-.
T Consensus 100 ~~~~~~f~~~~fD~d~~G~I~~~E~~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~ 167 (186)
T 2hps_A 100 AVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDF 167 (186)
T ss_dssp TTHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 3444555 77899999999999999999884 4889999999999999999999999999887543
No 470
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand, cytosolic, calcium, coiled coil, disease mutation, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kle_A 2kq6_A 2y4q_A
Probab=97.76 E-value=3.8e-06 Score=71.95 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 12 SKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 12 s~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
+.++...++++|+.+| |+|+.++++.+++..|.+.+++..++..+|.+++|.|+|+||+.+|
T Consensus 45 ~~~~~~~l~~aF~~fD----G~I~~~El~~~l~~lG~t~~ei~~~~~~~D~d~dG~I~~~EF~~~~ 106 (123)
T 2kld_A 45 KKNTVDDISESLRQGG----GKLNFDELRQDLKGKGHTDAEIEAIFTKYDQDGDQELTEHEHQQMR 106 (123)
T ss_dssp ------CCSCSSTTTT----TCEEHHHHHHHTTTCCSSHHHHHHHHHHHSSSSCCEECSHHHHHCS
T ss_pred ChhHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHH
Confidence 3445567889999999 9999999999999977789999999999999999999999998776
No 471
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=97.76 E-value=6.7e-05 Score=66.97 Aligned_cols=62 Identities=24% Similarity=0.411 Sum_probs=53.7
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
+.++.+|+.+|.|++|+|+.+|+..++... .++.+++..++..+ +++|.|+++||..++.-.
T Consensus 70 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~~~~~ 133 (165)
T 1k94_A 70 NAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY--SKNGRIFFDDYVACCVKL 133 (165)
T ss_dssp HHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHHH--CBTTBCBHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHHHH
Confidence 567889999999999999999999999884 47888999999988 788999999999877543
No 472
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=97.76 E-value=5.9e-05 Score=67.54 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=53.3
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhhC-------CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 21 EWFDIADSDGDGRITGNDATKFLGLS-------KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 21 ~~F~~~D~~~~G~Is~~e~~~~l~~~-------~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
..|..+|.|++|+|+.+|+..+++.. .++..++..++..+|.+++|.|+++||..++..+
T Consensus 5 ~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~ 71 (167)
T 1gjy_A 5 YGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL 71 (167)
T ss_dssp HHHHHHHCCTTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 35889999999999999999999983 3578899999999999999999999999877543
No 473
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=97.76 E-value=7.7e-05 Score=69.79 Aligned_cols=63 Identities=25% Similarity=0.451 Sum_probs=52.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhhC-------CCCH-HHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGLS-------KLSR-QELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~-------~l~~-~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.++.+|+.+|.|++|+|+.+|+..++... .++. +.+..++..+|.+++|.|+++||..++.
T Consensus 92 ~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 162 (211)
T 2ggz_A 92 EQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFINGMA 162 (211)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHTTSSCCCSCTHHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 3468889999999999999999999999872 2333 4588999999999999999999988764
No 474
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=97.76 E-value=4.4e-05 Score=69.75 Aligned_cols=62 Identities=29% Similarity=0.425 Sum_probs=54.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhh----C----------CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGL----S----------KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~----~----------~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.++.+|+.+|.|++|+|+.+|+..++.. . ..+.+.+..+|..+|.+++|.|+++||..++.
T Consensus 99 ~~~~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~ef~~~~~ 174 (190)
T 1g8i_A 99 EKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSK 174 (190)
T ss_dssp HHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHC-----CCGGGSSHHHHHHHHHHHHCSSCSSEEEHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCeECHHHHHHHHHHHHHHhCCccCCccccccHHHHHHHHHHHhcCCCCCcEeHHHHHHHHH
Confidence 46788999999999999999999999876 1 25677899999999999999999999998775
No 475
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=97.76 E-value=1.1e-05 Score=76.78 Aligned_cols=71 Identities=23% Similarity=0.117 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh-CC--CCHHHHHHHHHHH---------CCCCCCccCHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGL-SK--LSRQELKQIWALA---------DSKRQGFLDLAEFVTA 76 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~-~~--l~~~~l~~i~~~~---------d~~~~g~l~~~eF~~~ 76 (547)
..+++++.+.++++|..+|.|++|+|+.+|+..++.+ .+ ++..++..++..+ |.+++|.|+++||..+
T Consensus 43 ~~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~ 122 (226)
T 2lvv_A 43 RDKDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEF 122 (226)
T ss_dssp SSCCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHH
Confidence 4689999999999999999999999999999995544 33 3444455555554 9999999999999986
Q ss_pred HHH
Q 008954 77 MKL 79 (547)
Q Consensus 77 ~~l 79 (547)
+..
T Consensus 123 ~~~ 125 (226)
T 2lvv_A 123 RLM 125 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 476
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=97.75 E-value=5.1e-05 Score=68.10 Aligned_cols=67 Identities=22% Similarity=0.248 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC------CCCHHH-H--------HHHHHHHCCCCCCccCHHHHHHH
Q 008954 12 SKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS------KLSRQE-L--------KQIWALADSKRQGFLDLAEFVTA 76 (547)
Q Consensus 12 s~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~------~l~~~~-l--------~~i~~~~d~~~~g~l~~~eF~~~ 76 (547)
|+++.++++.+|..+|.|++|+|+.+|+..++... .++..+ + ..++..+| ++|.|+++||..+
T Consensus 1 s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~D--~~g~i~~~EF~~~ 78 (174)
T 1q80_A 1 SDLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA--GGKGIDETTFINS 78 (174)
T ss_dssp CHHHHHHHHHHHHHHCTTCSSEESHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHTGGGTT--TTSCEEHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHhcC--CCCeEcHHHHHHH
Confidence 57889999999999999999999999999999873 344445 4 34666777 8899999999987
Q ss_pred HHHH
Q 008954 77 MKLV 80 (547)
Q Consensus 77 ~~lv 80 (547)
+...
T Consensus 79 ~~~~ 82 (174)
T 1q80_A 79 MKEM 82 (174)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 477
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=97.75 E-value=2.5e-05 Score=83.30 Aligned_cols=68 Identities=28% Similarity=0.410 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC----------CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 11 CSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS----------KLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 11 ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~----------~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+++++.+.++++|+.+|.|++|.|+.+|+..+++.. ..+..++.++++.+|.|++|.|+++||..++.
T Consensus 340 ~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~G~I~~~EF~~~~~ 417 (494)
T 3lij_A 340 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAM 417 (494)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSEECHHHHHHTTHHHHSSCCCCC--CHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHhCcCCCCeEcHHHHHHHHHHhcccccccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999999999999999873 22367899999999999999999999998753
No 478
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=97.75 E-value=4.5e-05 Score=69.65 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=54.3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhh----CC----------CCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGL----SK----------LSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~----~~----------l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.++.+|+.+|.|++|+|+.+|+..++.. .+ .+...+..+|..+|.+++|.|+++||..++.
T Consensus 99 ~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 174 (190)
T 1fpw_A 99 EKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSK 174 (190)
T ss_dssp HHHHHHHHHHCSSCSSEEEHHHHHHHHHHHHTTSCSTTSSSCCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHhccccCcccccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 35788999999999999999999999976 12 5567899999999999999999999998764
No 479
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=97.73 E-value=5.4e-05 Score=78.97 Aligned_cols=62 Identities=29% Similarity=0.473 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
.+.++.+|+.+|.|++|+|+.+|++.+|.. ..++.+++..++..+|.|++|.|+|+||+.++
T Consensus 384 ~e~l~~aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~~D~D~DG~IsfdEFv~~L 447 (450)
T 3sg6_A 384 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 447 (450)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTSSSSEEHHHHHHHH
T ss_pred hhHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 346888999999999999999999999988 46889999999999999999999999998876
No 480
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=97.73 E-value=7.7e-05 Score=68.83 Aligned_cols=62 Identities=21% Similarity=0.385 Sum_probs=53.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC--------CCCH-HHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS--------KLSR-QELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--------~l~~-~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.++.+|..+|.|++|+|+.+|+..++... .++. +.+..+|..+|.+++|.|+++||..++.
T Consensus 88 ~~~~~~F~~~D~d~~G~I~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 158 (198)
T 2r2i_A 88 QKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQ 158 (198)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHHTTGGGGSSSCCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999999873 2344 4589999999999999999999998764
No 481
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=97.73 E-value=8.5e-05 Score=66.50 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=54.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
+.++.+|..+|.|++|+|+.+|+..++... .++.+++..++..+ +++|.|+++||..++.-.
T Consensus 72 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~~~~~ 135 (167)
T 1gjy_A 72 NGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY--STSGKITFDDYIACCVKL 135 (167)
T ss_dssp HHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHHHT--CBTTBEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh--CcCCcCcHHHHHHHHHHH
Confidence 567888999999999999999999999884 47889999999998 789999999999877543
No 482
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=97.72 E-value=3.3e-05 Score=82.37 Aligned_cols=63 Identities=25% Similarity=0.449 Sum_probs=54.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMKL 79 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~l 79 (547)
+.++.+|+.+|.|++|+|+.+|+..++...+++.+++.++++.+|.|+||.|+++||..+|.-
T Consensus 426 ~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~ 488 (494)
T 3lij_A 426 DKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQK 488 (494)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHC-CCSCCCHHHHHHHHTTCSSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 457889999999999999999999998877788888999999999999999999999887753
No 483
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=97.71 E-value=9.4e-05 Score=68.69 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=52.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhh------CCCCHHHHHH----HHHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLGL------SKLSRQELKQ----IWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~------~~l~~~~l~~----i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.++.+|+.+|.|++|+|+.+|+..++.. ..++.+++.. ++..+|.+++|.|+++||..++.
T Consensus 110 ~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 182 (207)
T 2ehb_A 110 HEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVS 182 (207)
T ss_dssp HHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 456899999999999999999999999852 4567766644 45699999999999999998764
No 484
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=97.70 E-value=1.2e-05 Score=77.62 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCC--CH------HHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 9 TFCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKL--SR------QELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 9 ~~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l--~~------~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
..+++.+.+.++.+|..+|.|++|+|+.+|+..+++..+. +. ..+..++..+|.+++|.|+++||..++
T Consensus 8 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~l~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~Ef~~~~ 84 (263)
T 2f33_A 8 LQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVL 84 (263)
T ss_dssp TTTSCCCHHHHHHHHHHHCTTCSSSBCSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHTTGGGCCBCHHHHHHHT
T ss_pred hhcCcccHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4577777888999999999999999999999999987322 22 678899999999999999999998875
No 485
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A
Probab=97.70 E-value=4.7e-05 Score=73.77 Aligned_cols=64 Identities=16% Similarity=0.339 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--C----CCCHHHHHH----HHHHHCCCCCCccCHHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGL--S----KLSRQELKQ----IWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~----~l~~~~l~~----i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
..+.+..+|..+|.|++|+|+.+|+..++.. . .++.+++.. ++..+|.|++|.|+++||..++.
T Consensus 194 ~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~D~d~dG~is~~EF~~~~~ 267 (272)
T 2be4_A 194 RKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLG 267 (272)
T ss_dssp HHHHHHHHHHHHCTTCCSEEETHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHCCSTTCEEEHHHHHHHTT
T ss_pred cHHHHHHHHHHhCCCCCCeecHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHc
Confidence 3578999999999999999999999999977 2 578888777 99999999999999999987663
No 486
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=97.70 E-value=4.7e-05 Score=69.61 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHH-----------HhhhCCC-CCCcccHHHHHHHHhhC---CCCHHHHHHHHHHHCCCCCCccCHHHH
Q 008954 9 TFCSKEHQKIYREW-----------FDIADSD-GDGRITGNDATKFLGLS---KLSRQELKQIWALADSKRQGFLDLAEF 73 (547)
Q Consensus 9 ~~ls~ee~~~~~~~-----------F~~~D~~-~~G~Is~~e~~~~l~~~---~l~~~~l~~i~~~~d~~~~g~l~~~eF 73 (547)
..+++++...+.+. |..+|.+ ++|+|+.+|+..++... ..+...+..++..+|.+++|.|++.||
T Consensus 6 ~~l~~~el~~~~~~~~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef 85 (190)
T 2l2e_A 6 SKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEF 85 (190)
T ss_dssp CCSCHHHHHHHHHHHCSCSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHHCCCSCHHHHHHHHHHHHCSSSTTCEEHHHH
T ss_pred ccCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCCccHHHHHHHHHhcCCCCCeEeHHHH
Confidence 35788887777666 9999999 89999999999999873 345678899999999999999999999
Q ss_pred HHHHH
Q 008954 74 VTAMK 78 (547)
Q Consensus 74 ~~~~~ 78 (547)
..++.
T Consensus 86 ~~~~~ 90 (190)
T 2l2e_A 86 ICALS 90 (190)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88764
No 487
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=97.69 E-value=6.7e-05 Score=79.74 Aligned_cols=67 Identities=16% Similarity=0.305 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhh----CC------------CCHHHHHHHHHHHCCCCCCccCHHHHH
Q 008954 11 CSKEHQKIYREWFDIADSDGDGRITGNDATKFLGL----SK------------LSRQELKQIWALADSKRQGFLDLAEFV 74 (547)
Q Consensus 11 ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~----~~------------l~~~~l~~i~~~~d~~~~g~l~~~eF~ 74 (547)
+++++.+.++++|+.+|.|++|.|+.+|+..++.. .+ ....++..++..+|.|++|.|+++||.
T Consensus 325 ~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~Ef~ 404 (486)
T 3mwu_A 325 TTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFI 404 (486)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHTCCGGGHHHHTSSCHHHHHHHHHHHHCTTCCSSBCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCCceeeHHHHHHHHHHhhhhhcccchhcccccchhhHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence 37888999999999999999999999999666654 22 226789999999999999999999997
Q ss_pred HHH
Q 008954 75 TAM 77 (547)
Q Consensus 75 ~~~ 77 (547)
.++
T Consensus 405 ~~~ 407 (486)
T 3mwu_A 405 ASA 407 (486)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 488
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=97.68 E-value=0.0001 Score=69.78 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=52.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHh----h--CCCCHHHHHHH----HHHHCCCCCCccCHHHHHHHHH
Q 008954 16 QKIYREWFDIADSDGDGRITGNDATKFLG----L--SKLSRQELKQI----WALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 16 ~~~~~~~F~~~D~~~~G~Is~~e~~~~l~----~--~~l~~~~l~~i----~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+.++.+|..+|.|++|+|+.+|+..++. . ..++.+++..+ |..+|.|++|.|+++||..++.
T Consensus 121 ~~~l~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~~~~~ 193 (226)
T 2zfd_A 121 DDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVL 193 (226)
T ss_dssp HHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45689999999999999999999999995 2 35677766554 5599999999999999998764
No 489
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=97.68 E-value=5.6e-05 Score=71.63 Aligned_cols=62 Identities=23% Similarity=0.399 Sum_probs=53.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC----C------C----CHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS----K------L----SRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~----~------l----~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.++.+|+.+|.|++|+|+.+|+..++... | + +.+.+..+++.+|.|++|.|+++||..++.
T Consensus 125 ~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~ 200 (224)
T 1s1e_A 125 EKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQ 200 (224)
T ss_dssp HHHHHHHHHHCTTCCSEECHHHHHHHHHHHHHHHTTCCCGGGCSSSHHHHHHHHHHHHCTTCSSCEEHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCeECHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 467889999999999999999999998762 2 2 247899999999999999999999998764
No 490
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.67 E-value=0.00017 Score=72.66 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=24.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCC
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCN 223 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~ 223 (547)
.|..++|+|++|+|||||+|+|+|..
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56679999999999999999999987
No 491
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=97.66 E-value=5.7e-05 Score=67.45 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=53.1
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhhC-------CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 21 EWFDIADSDGDGRITGNDATKFLGLS-------KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 21 ~~F~~~D~~~~G~Is~~e~~~~l~~~-------~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
..|..+|.|++|+|+.+|+..+++.. .++..++..++..+|.+++|.|+++||..++..+
T Consensus 3 ~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~ 69 (165)
T 1k94_A 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAAL 69 (165)
T ss_dssp HHHHHHHHGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHHHhccccCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 35899999999999999999999983 4578899999999999999999999999876543
No 492
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=97.66 E-value=4.4e-05 Score=70.98 Aligned_cols=61 Identities=21% Similarity=0.350 Sum_probs=52.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhhC----C------CC------HHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 18 IYREWFDIADSDGDGRITGNDATKFLGLS----K------LS------RQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 18 ~~~~~F~~~D~~~~G~Is~~e~~~~l~~~----~------l~------~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.++.+|..+|.|++|+|+.+|+..++... + ++ ...+..+|..+|.+++|.|+++||..++.
T Consensus 108 ~~~~~f~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 184 (207)
T 2d8n_A 108 KLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTL 184 (207)
T ss_dssp THHHHHHHHCTTCSSEECHHHHHHHHHHHHHHSCHHHHHTSCTTTSSHHHHHHHHHHHTTCCTTCCEEHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEcHHHHHHHHHHHHHHhccccCCCcccccccHHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 46789999999999999999999988762 3 33 36789999999999999999999998775
No 493
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.65 E-value=1.2e-05 Score=80.03 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCCCCCCCCCCCc-------ccceeEEEEeCCCccccCCceeeecCCCCCCCccccc
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCNYPGAHIGPEP-------TTDRFVVVMSGPDERTIPGNTIAVHADLPFSGLTTFG 270 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~~~~~~v~~~~-------~T~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 270 (547)
.|..++|+|++|||||||+|+|+|... ..++..+ .|++......-.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~------------------------- 224 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTS------------------------- 224 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEET-------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcC-------------------------
Q ss_pred cchhhhhhhhcccccccccceEEcCCCCCC
Q 008954 271 GAFLSKFECSQMSHPLLDQVTFVDTPGVLS 300 (547)
Q Consensus 271 ~~~~~~~~~~~~~~~ll~~l~lvDTPG~~~ 300 (547)
.-.++||||+..
T Consensus 225 ------------------~g~v~dtpg~~~ 236 (307)
T 1t9h_A 225 ------------------GGLVADTPGFSS 236 (307)
T ss_dssp ------------------TEEEESSCSCSS
T ss_pred ------------------CEEEecCCCccc
No 494
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=97.65 E-value=0.00012 Score=67.70 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=54.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhhC--CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGLS--KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~--~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
+.++.+|..+|.|++|+|+.+|+..++... .++.+++..++..+ +++|.|+++||..++.-.
T Consensus 103 ~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~--d~dg~i~~~eF~~~~~~~ 166 (198)
T 1juo_A 103 NGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY--STNGKITFDDYIACCVKL 166 (198)
T ss_dssp HHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHT--CSSSSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHHHH
Confidence 567888999999999999999999999884 47889999999999 789999999999877543
No 495
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=97.65 E-value=0.00014 Score=67.87 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhh--CCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH
Q 008954 15 HQKIYREWFDIADSDGDGRITGNDATKFLGL--SKLSRQELKQIWALADSKRQGFLDLAEFVTAM 77 (547)
Q Consensus 15 e~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~--~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~ 77 (547)
..+.+..+|+.+|.|++|.|+..|+..++.. ...+.+.+..+|+.+|.+++|.|+++||..++
T Consensus 55 ~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~E~~~~l 119 (211)
T 2ggz_A 55 ANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMF 119 (211)
T ss_dssp HHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhccCchHHHHHHHHHHhcCCCCCcCcHHHHHHHH
Confidence 3344555555555555555555555555544 22333445555555555555555555555444
No 496
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=97.64 E-value=7e-05 Score=68.57 Aligned_cols=62 Identities=24% Similarity=0.437 Sum_probs=52.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhh----CC----CC------HHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 17 KIYREWFDIADSDGDGRITGNDATKFLGL----SK----LS------RQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 17 ~~~~~~F~~~D~~~~G~Is~~e~~~~l~~----~~----l~------~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
+.++.+|..+|.|++|+|+.+|+..++.. .+ ++ ...+..+|..+|.+++|.|+++||..++.
T Consensus 99 ~~~~~~f~~~D~d~~G~I~~~E~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 174 (193)
T 1bjf_A 99 QKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAK 174 (193)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCeECHHHHHHHHHHHHHHhccccCCCcccccHHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 56788999999999999999999999875 12 33 34588999999999999999999998774
No 497
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.64 E-value=9.4e-05 Score=73.32 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.9
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCC
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCN 223 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~ 223 (547)
.+.+|+++|++|+||||+++.|++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999999876
No 498
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=97.63 E-value=0.0002 Score=64.87 Aligned_cols=69 Identities=13% Similarity=0.209 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhC---CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLS---KLSRQELKQIWALADSKRQGFLDLAEFVTAMKLV 80 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~---~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~lv 80 (547)
.+|+++...+...|... |++|.|+.+++..++... ..+...+..++..+|.+++|.|+++||..++..+
T Consensus 14 ~~s~~~i~~l~~~fd~~--d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~ 85 (183)
T 1s6c_A 14 NFTKRELQVLYRGFKNE--XPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSIL 85 (183)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 56888877777777765 588999999999999883 2678899999999999999999999999887644
No 499
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=97.63 E-value=4.1e-05 Score=71.45 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHhhCCCCHHHHHHHHHHHCCCCCCccCHHHHHHHHH
Q 008954 10 FCSKEHQKIYREWFDIADSDGDGRITGNDATKFLGLSKLSRQELKQIWALADSKRQGFLDLAEFVTAMK 78 (547)
Q Consensus 10 ~ls~ee~~~~~~~F~~~D~~~~G~Is~~e~~~~l~~~~l~~~~l~~i~~~~d~~~~g~l~~~eF~~~~~ 78 (547)
.+|+++.+.++.+|..+|.|++|+|+.+|+..++.. +... ...+++..+|.+++|.|+|+||..++.
T Consensus 22 ~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~~~l-g~~~-~~~~l~~~~d~~~~g~i~~~EF~~~~~ 88 (208)
T 2ct9_A 22 GFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPEL-AINP-LGDRIINAFFSEGEDQVNFRGFMRTLA 88 (208)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECTGGGGGCHHH-HTST-THHHHHHTTSCTTCSCEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHc-CCCC-cHHHHHHHHcCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999999999999986533 2211 235688999999999999999998764
No 500
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.62 E-value=6.8e-05 Score=66.38 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=24.1
Q ss_pred CCcEEEEeeCCCCChhHHHHHHHhCC
Q 008954 198 AKPMVMLLGQYSTGKTTFIKHLLRCN 223 (547)
Q Consensus 198 ~g~~V~lvG~~~aGKSTLiN~Llg~~ 223 (547)
.+..++|+|++|+|||||++++++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999976
Done!