BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008955
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D0O|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0O|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0P|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
pdb|2D0P|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
Length = 610
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 341 SGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGA---GQL 397
+G+S T G ++V Q +L KP F+ LA+ S+ V++ GG AG Q
Sbjct: 298 TGESGTNIGGML-EHVRQTMAELTNKPSSEIFIQDLLAVDTSVPVSVTGGLAGEFSLEQA 356
Query: 398 IIIASMILSFELPFALV 414
+ IASM+ S L A++
Sbjct: 357 VGIASMVKSDRLQMAMI 373
>pdb|2WFO|A Chain A, Crystal Structure Of Machupo Virus Envelope Glycoprotein
Gp1
Length = 182
Score = 32.0 bits (71), Expect = 0.79, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 260 IKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKAS 319
+ S+C FY ++ G A FLI VS +SV S PED +C LNK+
Sbjct: 2 LPSLCMLNNSFYYMKGG---ANIFLIRVSDVSVLMKEYDVSVYEPEDLGNC----LNKSD 54
Query: 320 FLLRNVLGSWSSKLFAIAL 338
SW+ F+IAL
Sbjct: 55 -------SSWAIHWFSIAL 66
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 19 RSFSNAPLIKNEDADQIVVPDKTSW--KNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQY 76
R N + KN+ D I++ K W KN I F SI DP N L+SG +
Sbjct: 48 RPRLNEIIAKNKSIDDILIK-KNDWYEKNNIKVITSEFATSI---DPNNKLVTLKSGEKI 103
Query: 77 KYELLWI 83
KYE L I
Sbjct: 104 KYEKLII 110
>pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
Length = 1231
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 436 TAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLA---GVAY 492
T T G L+MI N+Y ++ + +FH + + L IFG +Y A G A
Sbjct: 81 TTFTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALSIFG-DHQDIYAARQTGFAM 139
Query: 493 LVLRKNKEASHLLALTTH 510
L +EA H +AL H
Sbjct: 140 LASSSVQEA-HDMALVAH 156
>pdb|1DM0|A Chain A, Shiga Toxin
pdb|1DM0|L Chain L, Shiga Toxin
Length = 287
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 218 QLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGF 277
++ G TG+ I+ +L HS L++ + R++ ++ EA RF I+ GF
Sbjct: 119 RVAGISRTGMQINRHSLTTSYLDLMSHSGTSLTQSVARAMLRFVTVTAEALRFRQIQRGF 178
>pdb|1R4Q|A Chain A, Shiga Toxin
pdb|1R4Q|L Chain L, Shiga Toxin
Length = 293
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 218 QLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGF 277
++ G TG+ I+ +L HS L++ + R++ ++ EA RF I+ GF
Sbjct: 119 RVAGISRTGMQINRHSLTTSYLDLMSHSGTSLTQSVARAMLRFVTVTAEALRFRQIQRGF 178
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 250 SRKIPRSVRSIKSICKEACRFYMI-----ESGFALAVAFLINV--SVISVSGAVCSSSNI 302
R+IP + SIK +C RF + ++G V F NV + IS++G V +
Sbjct: 4 EREIP-AEDSIKVVC----RFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKV 58
Query: 303 -NPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFL 361
P AS + + A ++ +VL ++ +FA +SG++ T+ G G V QG +
Sbjct: 59 FKP--NASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVI-GDSVKQGII 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,787,278
Number of Sequences: 62578
Number of extensions: 566279
Number of successful extensions: 1433
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1429
Number of HSP's gapped (non-prelim): 13
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)