Query 008955
Match_columns 547
No_of_seqs 289 out of 1312
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 18:38:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 1E-114 2E-119 902.9 23.8 470 25-504 6-485 (503)
2 PRK00701 manganese transport p 100.0 7.7E-87 1.7E-91 717.4 49.5 430 17-458 4-436 (439)
3 COG1914 MntH Mn2+ and Fe2+ tra 100.0 9E-81 2E-85 660.4 46.7 406 39-460 9-414 (416)
4 TIGR01197 nramp NRAMP (natural 100.0 4.1E-80 8.8E-85 655.1 43.8 374 44-426 1-390 (390)
5 PF01566 Nramp: Natural resist 100.0 3.6E-68 7.7E-73 560.2 36.9 356 66-433 1-358 (358)
6 TIGR02119 panF sodium/pantothe 98.8 0.00025 5.3E-09 78.0 42.5 117 55-174 50-175 (471)
7 PF03222 Trp_Tyr_perm: Tryptop 98.7 0.00024 5.2E-09 76.6 38.3 158 48-208 4-169 (394)
8 TIGR00813 sss transporter, SSS 98.7 8.9E-05 1.9E-09 79.8 34.5 119 53-174 11-134 (407)
9 PRK09442 panF sodium/panthothe 98.7 0.0012 2.6E-08 72.8 43.9 115 57-174 53-176 (483)
10 PF00474 SSF: Sodium:solute sy 98.7 1.6E-05 3.5E-10 85.3 27.9 114 56-169 17-133 (406)
11 PRK15419 proline:sodium sympor 98.5 0.0017 3.6E-08 72.2 40.2 120 54-174 49-178 (502)
12 PRK12488 acetate permease; Pro 98.5 0.0017 3.7E-08 72.9 40.4 121 53-174 75-198 (549)
13 TIGR02121 Na_Pro_sym sodium/pr 98.5 0.0015 3.2E-08 72.3 37.8 118 56-174 47-174 (487)
14 PRK09395 actP acetate permease 98.5 0.0037 7.9E-08 70.3 41.1 121 53-174 77-200 (551)
15 TIGR02711 symport_actP cation/ 98.5 0.0015 3.3E-08 73.4 37.6 121 53-174 75-198 (549)
16 PRK15132 tyrosine transporter 98.4 0.00098 2.1E-08 72.1 33.7 157 48-208 4-169 (403)
17 COG1457 CodB Purine-cytosine p 98.4 0.0024 5.3E-08 69.4 34.4 121 79-202 53-173 (442)
18 PRK11375 allantoin permease; P 98.3 0.0097 2.1E-07 65.9 40.5 47 78-124 60-106 (484)
19 PRK11387 S-methylmethionine tr 98.3 0.011 2.5E-07 64.8 43.7 40 318-357 277-316 (471)
20 TIGR00910 2A0307_GadC glutamat 98.2 0.02 4.3E-07 63.8 38.4 50 74-124 29-83 (507)
21 PF01235 Na_Ala_symp: Sodium:a 98.1 0.0027 5.9E-08 68.7 28.5 278 58-361 30-338 (416)
22 PRK13629 threonine/serine tran 98.1 0.025 5.4E-07 61.8 36.6 151 54-209 26-188 (443)
23 PRK09664 tryptophan permease T 98.1 0.024 5.1E-07 61.6 35.2 153 48-205 10-172 (415)
24 PRK15049 L-asparagine permease 98.1 0.031 6.6E-07 62.1 43.2 39 319-357 292-330 (499)
25 PRK10483 tryptophan permease; 98.1 0.0041 8.8E-08 67.4 29.0 151 47-205 11-173 (414)
26 TIGR00800 ncs1 NCS1 nucleoside 98.0 0.011 2.5E-07 64.5 31.6 67 60-127 27-96 (442)
27 TIGR00837 araaP aromatic amino 98.0 0.0049 1.1E-07 65.5 27.7 71 318-389 255-326 (381)
28 COG0591 PutP Na+/proline sympo 98.0 0.045 9.8E-07 60.8 41.4 115 60-174 53-173 (493)
29 PRK11017 codB cytosine permeas 98.0 0.04 8.7E-07 59.6 40.0 116 79-198 43-159 (404)
30 TIGR03648 Na_symport_lg probab 98.0 0.058 1.2E-06 60.8 42.6 119 53-174 40-163 (552)
31 TIGR00814 stp serine transport 98.0 0.017 3.6E-07 62.5 30.8 125 81-207 33-170 (397)
32 TIGR00905 2A0302 transporter, 97.9 0.056 1.2E-06 59.4 41.0 38 319-356 271-308 (473)
33 PF02133 Transp_cyt_pur: Perme 97.9 0.0055 1.2E-07 66.6 26.1 71 57-128 19-92 (440)
34 COG3949 Uncharacterized membra 97.9 0.017 3.7E-07 60.3 27.6 147 43-196 6-153 (349)
35 PRK10484 putative transporter; 97.8 0.091 2E-06 58.8 41.4 111 53-163 46-164 (523)
36 TIGR00796 livcs branched-chain 97.8 0.087 1.9E-06 56.6 33.9 93 316-418 255-348 (378)
37 PRK10249 phenylalanine transpo 97.8 0.1 2.3E-06 57.2 42.6 105 50-159 31-138 (458)
38 TIGR02358 thia_cytX probable h 97.6 0.13 2.9E-06 55.2 35.4 128 78-209 29-164 (386)
39 TIGR00835 agcS amino acid carr 97.6 0.12 2.6E-06 56.4 30.4 281 57-364 57-368 (425)
40 TIGR00913 2A0310 amino acid pe 97.5 0.23 5E-06 54.5 41.5 79 42-124 5-85 (478)
41 PRK10238 aromatic amino acid t 97.5 0.26 5.5E-06 54.1 41.4 144 39-187 12-157 (456)
42 PRK11357 frlA putative fructos 97.5 0.26 5.6E-06 53.7 34.7 43 80-124 47-91 (445)
43 PRK11021 putative transporter; 97.3 0.33 7.1E-06 52.3 39.9 36 318-353 248-283 (410)
44 TIGR03810 arg_ornith_anti argi 97.3 0.39 8.4E-06 52.8 42.4 39 318-356 266-304 (468)
45 PRK10644 arginine:agmatin anti 97.3 0.38 8.2E-06 52.4 41.5 37 85-123 51-87 (445)
46 PRK11049 D-alanine/D-serine/gl 97.3 0.43 9.4E-06 52.5 43.8 35 320-354 284-318 (469)
47 COG0733 Na+-dependent transpor 97.2 0.46 9.9E-06 51.8 34.3 267 53-348 13-322 (439)
48 TIGR00908 2A0305 ethanolamine 97.2 0.45 9.8E-06 51.7 40.9 38 86-125 52-89 (442)
49 PF05525 Branch_AA_trans: Bran 97.1 0.57 1.2E-05 51.2 33.7 325 53-418 9-354 (427)
50 TIGR00907 2A0304 amino acid pe 97.1 0.61 1.3E-05 51.3 34.6 36 318-353 291-327 (482)
51 TIGR01773 GABAperm gamma-amino 97.1 0.59 1.3E-05 51.0 40.1 79 41-124 14-93 (452)
52 COG0814 SdaC Amino acid permea 97.1 0.62 1.3E-05 50.7 33.7 153 50-209 12-178 (415)
53 TIGR00909 2A0306 amino acid tr 96.8 0.94 2E-05 48.8 36.4 39 319-357 267-305 (429)
54 PRK10836 lysine transporter; P 96.8 1.1 2.5E-05 49.4 38.7 37 320-356 286-322 (489)
55 TIGR00930 2a30 K-Cl cotranspor 96.8 2 4.4E-05 51.7 40.8 28 330-357 386-413 (953)
56 COG1115 AlsT Na+/alanine sympo 96.7 1.3 2.9E-05 48.2 30.2 264 58-359 74-380 (452)
57 PRK10580 proY putative proline 96.7 1.4 3E-05 48.2 41.2 75 41-124 11-90 (457)
58 TIGR00911 2A0308 L-type amino 96.6 1.6 3.4E-05 48.4 37.4 37 86-124 89-125 (501)
59 PF13520 AA_permease_2: Amino 96.5 1.6 3.5E-05 46.8 31.7 39 318-356 260-298 (426)
60 PRK10435 cadB lysine/cadaverin 96.4 1.9 4.1E-05 46.9 42.0 37 85-124 48-84 (435)
61 PRK10197 gamma-aminobutyrate t 96.4 2 4.3E-05 47.0 38.2 35 88-124 39-73 (446)
62 COG4147 DhlC Predicted symport 96.3 2.3 5.1E-05 46.8 30.5 77 98-174 95-172 (529)
63 PRK10746 putative transport pr 96.3 2.4 5.3E-05 46.6 41.9 35 88-124 57-91 (461)
64 PRK15433 branched-chain amino 96.0 3.2 6.9E-05 45.6 37.5 81 52-133 13-93 (439)
65 PRK10655 potE putrescine trans 95.5 4.6 0.0001 43.7 41.1 36 318-353 260-295 (438)
66 KOG1289 Amino acid transporter 95.3 6.5 0.00014 44.1 24.6 157 171-350 189-363 (550)
67 TIGR03813 put_Glu_GABA_T putat 95.2 6.2 0.00013 43.4 38.7 64 55-124 11-79 (474)
68 PF00324 AA_permease: Amino ac 94.8 0.29 6.3E-06 53.8 12.2 37 320-356 278-314 (478)
69 TIGR03428 ureacarb_perm permea 94.4 9.6 0.00021 41.9 39.6 44 79-124 52-95 (475)
70 COG4145 PanF Na+/panthothenate 94.0 10 0.00023 40.7 34.3 117 55-176 49-176 (473)
71 PF02554 CstA: Carbon starvati 93.9 2.7 5.9E-05 45.0 16.4 62 62-125 67-132 (376)
72 COG1966 CstA Carbon starvation 93.7 15 0.00032 41.4 36.5 54 71-125 75-132 (575)
73 PF00209 SNF: Sodium:neurotran 93.7 3.4 7.4E-05 46.3 17.9 34 327-360 344-378 (523)
74 COG1113 AnsP Gamma-aminobutyra 93.6 14 0.0003 40.8 30.7 123 61-187 29-158 (462)
75 TIGR00906 2A0303 cationic amin 92.7 21 0.00046 40.4 37.6 37 320-356 303-339 (557)
76 COG1953 FUI1 Cytosine/uracil/t 92.7 20 0.00043 40.0 28.5 138 62-200 53-215 (497)
77 TIGR00912 2A0309 spore germina 92.3 17 0.00037 38.2 34.3 99 87-195 47-151 (359)
78 COG1114 BrnQ Branched-chain am 90.9 28 0.0006 38.0 34.6 78 52-130 10-87 (431)
79 COG0833 LysP Amino acid transp 87.6 55 0.0012 37.0 27.3 140 50-201 60-205 (541)
80 PRK15238 inner membrane transp 85.9 62 0.0013 35.8 43.3 66 55-124 17-87 (496)
81 KOG1286 Amino acid transporter 84.6 79 0.0017 36.0 25.0 30 328-357 315-347 (554)
82 COG0531 PotE Amino acid transp 82.6 75 0.0016 34.2 42.1 36 318-353 274-309 (466)
83 COG1292 BetT Choline-glycine b 77.6 1.3E+02 0.0028 34.0 20.6 47 145-192 216-269 (537)
84 PF12794 MscS_TM: Mechanosensi 76.8 1.1E+02 0.0023 32.5 16.8 21 370-390 126-147 (340)
85 PF03845 Spore_permease: Spore 76.8 97 0.0021 32.0 32.1 128 82-221 36-172 (320)
86 COG3949 Uncharacterized membra 74.1 68 0.0015 34.1 13.2 86 320-419 70-156 (349)
87 KOG2349 Na+:iodide/myo-inosito 61.7 3E+02 0.0065 31.7 17.2 109 58-170 58-171 (585)
88 KOG1303 Amino acid transporter 61.4 2.6E+02 0.0056 30.9 29.1 132 107-243 105-248 (437)
89 PRK09509 fieF ferrous iron eff 49.5 3.1E+02 0.0068 28.2 16.4 19 175-193 72-90 (299)
90 PF02028 BCCT: BCCT family tra 47.6 4.5E+02 0.0097 29.5 21.8 73 340-419 400-475 (485)
91 PLN03074 auxin influx permease 46.2 4.6E+02 0.0099 29.2 31.1 49 369-419 350-398 (473)
92 PF05915 DUF872: Eukaryotic pr 43.3 1.3E+02 0.0028 27.0 7.7 32 471-503 78-109 (115)
93 COG0053 MMT1 Predicted Co/Zn/C 38.2 3.3E+02 0.0072 28.4 11.1 61 175-241 74-134 (304)
94 PRK15433 branched-chain amino 37.3 6.1E+02 0.013 28.1 13.3 61 109-169 267-327 (439)
95 TIGR01297 CDF cation diffusion 36.7 4.4E+02 0.0095 26.2 13.3 17 176-192 52-68 (268)
96 PF05525 Branch_AA_trans: Bran 30.5 7.7E+02 0.017 27.2 14.1 79 109-193 263-342 (427)
97 KOG1305 Amino acid transporter 25.1 9.3E+02 0.02 26.4 25.9 51 69-121 31-81 (411)
98 PRK03557 zinc transporter ZitB 24.4 8.1E+02 0.018 25.4 17.9 19 176-194 81-99 (312)
99 PF14362 DUF4407: Domain of un 24.3 3.6E+02 0.0078 27.8 8.6 34 143-176 32-65 (301)
100 PF11654 DUF2665: Protein of u 23.8 1.5E+02 0.0034 22.4 4.1 37 81-120 10-46 (47)
101 PF01102 Glycophorin_A: Glycop 23.5 1E+02 0.0022 28.0 3.7 18 484-501 78-95 (122)
102 COG4858 Uncharacterized membra 22.5 7.5E+02 0.016 24.4 11.8 72 403-476 131-202 (226)
103 PF06738 DUF1212: Protein of u 22.3 6.7E+02 0.015 23.7 11.2 9 147-155 116-124 (193)
104 PRK02983 lysS lysyl-tRNA synth 22.1 6E+02 0.013 31.6 11.0 44 406-450 116-159 (1094)
105 COG2271 UhpC Sugar phosphate p 21.8 8.2E+02 0.018 27.2 10.8 28 397-424 123-150 (448)
106 PRK14853 nhaA pH-dependent sod 21.3 5.6E+02 0.012 28.3 9.5 117 79-219 126-243 (423)
107 PRK00968 tetrahydromethanopter 20.8 3.1E+02 0.0066 27.5 6.6 41 331-374 181-221 (240)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-114 Score=902.89 Aligned_cols=470 Identities=50% Similarity=0.789 Sum_probs=424.4
Q ss_pred ccccCCCCcccc-cCCcchHHHHHHhhhHHHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008955 25 PLIKNEDADQIV-VPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGV 103 (547)
Q Consensus 25 ~~~~~~~~~~~~-~~~~~~~~~~~~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgv 103 (547)
+..|+.++.+++ .+++++|||+|+|+|||||||+||+||||++||+|+||++||+|||++++++++++++|++++|+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGv 85 (503)
T KOG1291|consen 6 LLVEDQEGIDIPVKPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGV 85 (503)
T ss_pred hhcccccccCCCCCccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334433333333 3568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008955 104 VTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEF 183 (547)
Q Consensus 104 vTG~~Lae~~r~~y~~~~~~~lwi~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~r~lE~ 183 (547)
||||||+|.||++||||+++.+|+++|+|++++|+|||+|+|+|+|+|+++|+|+||+||++||++++++.|||.||+|.
T Consensus 86 VTG~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVliTilD~f~fL~l~kyGiRklE~ 165 (503)
T KOG1291|consen 86 VTGKHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLITILDTFLFLFLDKYGIRKLEA 165 (503)
T ss_pred cccHHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCC--ChHHHHHHHhcccchhHHHHHHHHHHhhhcCCCcchhhh
Q 008955 184 LIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGN--GATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIK 261 (547)
Q Consensus 184 ~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~G~~iP~~~~~--~~l~~avaiiGatimP~nlflhS~lv~~R~~~~~~~~~~ 261 (547)
++.+|+..|++||.+|+..++|+.+|++.|.|+|+++++ +.+.+++|++||+|||||+|+||++||+|+.|++.|.
T Consensus 166 ~~~~Li~~mai~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~-- 243 (503)
T KOG1291|consen 166 FFAFLIVTMAISFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKK-- 243 (503)
T ss_pred HHHHHHHHHHHHHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhh--
Confidence 999999999999999999999999999999999999963 4689999999999999999999999999999876542
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccCCC-CC-----CCcccccccchHHHHHHHHHhhhHHHHHHH
Q 008955 262 SICKEACRFYMIESGFALAVAFLINVSVISVS-GAVCSSSNI-NP-----EDQASCKDLDLNKASFLLRNVLGSWSSKLF 334 (547)
Q Consensus 262 ~~~~~~~~~~~id~~~~l~vs~lIn~~vviv~-A~vl~~~g~-~~-----~~~~~~~~~~l~~a~~~L~~~lG~~a~~iF 334 (547)
+++|+++|..+|+.+++.++|.||.+++.++ |..+++... .. .+.+++.+.|+.+++.+|++.+|+++.++|
T Consensus 244 -~v~ea~~y~~ies~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~~a~~If 322 (503)
T KOG1291|consen 244 -GVYEANNYFPIESAIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGPAALYIF 322 (503)
T ss_pred -hhHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhccHHHHHH
Confidence 2489999999999999999999999999998 766664321 11 122344577899999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhHhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHHHHHHH
Q 008955 335 AIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALV 414 (547)
Q Consensus 335 aigLlaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpallv~~~~g~~~~~~Ll~~aqvi~s~~LPfali 414 (547)
++|+++||||||+||||+||++||||+|++++||.||++||++||+|++++++..|..+..++++++||++|++|||+++
T Consensus 323 ai~lLasGQSstitgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~i 402 (503)
T KOG1291|consen 323 AIGLLASGQSSTITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVI 402 (503)
T ss_pred HHHHHHCCCcccceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHhcCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008955 415 PLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLV 494 (547)
Q Consensus 415 pll~~~n~k~iMG~~~n~~~~~il~~~~~~~i~~lni~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~yl~ 494 (547)
|++.|+|+|++||+|+|+...+..+|....+++.+|.|++++ +...+.+++.. +...+....+.|+++++||+
T Consensus 403 PLl~ftS~r~IM~~~~~~~~~~~~~~~~~~~~~~in~y~~v~-~~~~~~~~~~~------~~~~~~~~~~~y~~~i~yL~ 475 (503)
T KOG1291|consen 403 PLLTFTSSRKIMGVFKNGLVTEELTWTVAALVLGINGYFLVS-FFWSLVGKHSK------IVVTVNVWTLAYLAFILYLA 475 (503)
T ss_pred hHHhhhccHHHhhhhccCccceeeeehheeeeeeeeeEEeee-ehhhhcCCcee------eehhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999995 44445543322 22234456688999999999
Q ss_pred hccccccccc
Q 008955 495 LRKNKEASHL 504 (547)
Q Consensus 495 ~~~~~~~~~~ 504 (547)
.++.......
T Consensus 476 ~~~l~~~~~~ 485 (503)
T KOG1291|consen 476 ATCLNAYSII 485 (503)
T ss_pred HHHHHHHhhh
Confidence 9986655433
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=7.7e-87 Score=717.41 Aligned_cols=430 Identities=44% Similarity=0.764 Sum_probs=397.1
Q ss_pred CCCCCCCCccccCCCCcccccCCcchHHHHHHhhhHHHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 008955 17 GNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQS 96 (547)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~ 96 (547)
-+|++.++|.++|.+.+....++++.||++++++|||++++++|+||||++|++|+||+|||+|+|++++++++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~ 83 (439)
T PRK00701 4 LPRTATAPFSLSEVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQS 83 (439)
T ss_pred CcccccCCCChhhhcccccCCCcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 47899999998888665444445677999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhh
Q 008955 97 LAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQY 176 (547)
Q Consensus 97 laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~y 176 (547)
+++|+|++|||+++|.|||||||+++|++|+.++++++++|++|++|+|+|+|+++|+|.+++++++++++++++++.++
T Consensus 84 ~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~~~ 163 (439)
T PRK00701 84 LSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRR 163 (439)
T ss_pred HHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888887777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccc---cCCCChHHHHHHHhcccchhHHHHHHHHHHhhhcC
Q 008955 177 GVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQ---LKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKI 253 (547)
Q Consensus 177 g~r~lE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~G~~iP~---~~~~~~l~~avaiiGatimP~nlflhS~lv~~R~~ 253 (547)
+||++|++++.++.+|.+||+++++.++|||+|+++| ++|+ +|+++.+..++|++|+|+||||+|+||+++++|+.
T Consensus 164 ~y~~~E~i~~~lv~~m~l~f~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~ 242 (439)
T PRK00701 164 GFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVV 242 (439)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999 8999 88656678899999999999999999999988855
Q ss_pred CCcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhHHHHHH
Q 008955 254 PRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKL 333 (547)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~id~~~~l~vs~lIn~~vviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~i 333 (547)
+++++.. ++.+|+.++|+.+++.+++++|.++++++|+++|++|... ..+.+|++++|+|.+|++++++
T Consensus 243 ~~~~~~~----~~~l~~~r~Dt~~g~~i~~li~~ai~v~~A~~l~~~g~~~-------~~~~~~~a~~L~p~~G~~a~~l 311 (439)
T PRK00701 243 GRTGEEK----REALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTD-------VADIEDAYLLLSPLLGAAAATL 311 (439)
T ss_pred cCChHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-------cCCHHHHHHHHHHHHhHHHHHH
Confidence 4333333 7789999999999999999999999999999999877531 1257889999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHHHHHH
Q 008955 334 FAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFAL 413 (547)
Q Consensus 334 FaigLlaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpallv~~~~g~~~~~~Ll~~aqvi~s~~LPfal 413 (547)
|++|+++|||+|++++++++++++|+|+++|.++|.|+..+|.++++|++++.++.+..+|.++++++|++|+++||+++
T Consensus 312 FaiGL~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aqv~~~i~LP~~~ 391 (439)
T PRK00701 312 FGIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQVVLSFGLPFAL 391 (439)
T ss_pred HHHHHHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999899999999999999999887776545689999999999999999999
Q ss_pred HHHHHHhcCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008955 414 VPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSF 458 (547)
Q Consensus 414 ipll~~~n~k~iMG~~~n~~~~~il~~~~~~~i~~lni~~l~~~~ 458 (547)
+|+++++|||++||+|||+++.|+++|++.++++.+|++++++.+
T Consensus 392 ~~ll~l~~~~~imG~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 436 (439)
T PRK00701 392 IPLLLFTSDRKLMGELVNPRWVKIIAWIIAVLIVALNIYLLYQTF 436 (439)
T ss_pred HHHHHHHCCHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765
No 3
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-81 Score=660.39 Aligned_cols=406 Identities=42% Similarity=0.657 Sum_probs=378.8
Q ss_pred CcchHHHHHHhhhHHHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCC
Q 008955 39 DKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYP 118 (547)
Q Consensus 39 ~~~~~~~~~~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~ 118 (547)
++.+||+.++++||||+|+.+|+||||++|+.|+|++|||+|+|++++++++++++|++++|+|++|||+++|.|||+|+
T Consensus 9 ~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~ 88 (416)
T COG1914 9 KRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYL 88 (416)
T ss_pred hHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 008955 119 KVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFA 198 (547)
Q Consensus 119 ~~~~~~lwi~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~ 198 (547)
|++.+++|+.+|++++++|++|++|+|+|+|+++|+|+.++++++++++++++..+ |||++|++...++.+|.+||.+
T Consensus 89 ~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~--~~r~~E~~v~~l~~~~~i~~~~ 166 (416)
T COG1914 89 PGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLK--GYRLLERVVLILGLVLVILFVY 166 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887766 7899999999999999999999
Q ss_pred HHhhcCCCHHHhhccccccccCCCChHHHHHHHhcccchhHHHHHHHHHHhhhcCCCcchhhhhhhHHhhHHHHHHHHHH
Q 008955 199 ELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGFA 278 (547)
Q Consensus 199 ~~~~~~Pd~~~v~~G~~iP~~~~~~~l~~avaiiGatimP~nlflhS~lv~~R~~~~~~~~~~~~~~~~~~~~~id~~~~ 278 (547)
+++.++|+++++.++.++|+.|..+.+..++|++|||||||++|+||++++++.. ++++. +++.|+.++|+.++
T Consensus 167 ~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~--~~~~~----~~~~~~~~~d~~i~ 240 (416)
T COG1914 167 VAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGI--KGEEN----LRALRYSRIDTIIG 240 (416)
T ss_pred HHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccc--cchhH----HHHHHHHHHHHHHH
Confidence 9999999999999999999988645688999999999999999999999998432 22222 77899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHhhh
Q 008955 279 LAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQ 358 (547)
Q Consensus 279 l~vs~lIn~~vviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~vm~ 358 (547)
+..+.++|.+++++++..+|.++... .+.+++++.+.++|.+|+.+..+|++++++||++|+.+++|++|++||
T Consensus 241 ~~~a~lv~~ail~~aa~~~~~~~~~~------~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~ 314 (416)
T COG1914 241 MIIALLVNLAILIVAAAGFHNSGPNQ------DVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIVME 314 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccc------cccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHH
Confidence 99999999999999999998765321 134678899999999999999999999999999999999999999999
Q ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHHHHHHHHHHHHhcCcccccCCCChHHHHHH
Q 008955 359 GFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAI 438 (547)
Q Consensus 359 gfl~~~~~~~~r~l~tr~iaivpallv~~~~g~~~~~~Ll~~aqvi~s~~LPfalipll~~~n~k~iMG~~~n~~~~~il 438 (547)
|+++++.++|.|+..+|+++++|++.+.+..| ++.++++++|+++++++||+++|++.+++||++||+|+|+++.+++
T Consensus 315 g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g--~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~ 392 (416)
T COG1914 315 GFLNWRIPLWRRRLITRTFAIVPGLAIIILFG--DPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVL 392 (416)
T ss_pred hhhcccCchHhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHH
Confidence 99999999999999999999999888888777 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008955 439 TWIIGSLIMIINVYYLATSFIK 460 (547)
Q Consensus 439 ~~~~~~~i~~lni~~l~~~~~~ 460 (547)
+|...+++..+|++++++.+.+
T Consensus 393 ~~~v~~~i~~L~i~li~~~~~~ 414 (416)
T COG1914 393 GWIVVILIVALNIILLVGTLGG 414 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999976543
No 4
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=4.1e-80 Score=655.06 Aligned_cols=374 Identities=50% Similarity=0.806 Sum_probs=340.3
Q ss_pred HHHHHhhhHHHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHH
Q 008955 44 KNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123 (547)
Q Consensus 44 ~~~~~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~ 123 (547)
||+++++|||++++++|+||||++|++|+||+|||+|+|++++++++++++|++++|+|++|||+++|.|||+|||+.++
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008955 124 ILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA 203 (547)
Q Consensus 124 ~lwi~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~~~~~~ 203 (547)
.+|++++++++++|++|++|+|+|+|++||+|.|+++++++++++.++++.+++||++|+++..++.+|.+||+++++.+
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~lv~~m~~~f~~~~~~~ 160 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYA 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhCCceeHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999999999988888877777788899999999999999999999999999
Q ss_pred CCCHHHhhccccccccCC--CChHHHHHHHhcccchhHHHHHHHHHHhhhcCCCcchhhhhhhHHhh-------------
Q 008955 204 KPEAKEVLHGLFVPQLKG--NGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEAC------------- 268 (547)
Q Consensus 204 ~Pd~~~v~~G~~iP~~~~--~~~l~~avaiiGatimP~nlflhS~lv~~R~~~~~~~~~~~~~~~~~------------- 268 (547)
+|||+|+++|.++|+.|. ++.+..++|++|+|+||||+|+||+++|+|++++++++. +|+++
T Consensus 161 ~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 237 (390)
T TIGR01197 161 KPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEG---VSEANMYRPIEAAIALSV 237 (390)
T ss_pred CCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhccccCcccchh---hhhhhhhchhHHHHHHHH
Confidence 999999999988999773 356788999999999999999999999999987665322 13434
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q 008955 269 RFYMIESGFALAVAFL-INVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTI 347 (547)
Q Consensus 269 ~~~~id~~~~l~vs~l-In~~vviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~iFaigLlaAg~sSti 347 (547)
++.+.|+.++++...+ +|.++++++|+++|+++-. +++.|+.++++.|||.+|++++++|++|+++|||||++
T Consensus 238 ~~~~~d~~~~i~~~~~~v~~~ilv~aaa~l~~~~~~------~~~~~~~~~~~~L~p~~G~~a~~lF~igLlaAG~sS~i 311 (390)
T TIGR01197 238 SFSINEFVIALFTAALFVNTNILVVAGATLFNSNNN------ADAADLFSIGVLLGCLFSPAAGYIFAVGLLAAGQSSGM 311 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC------cCcCCHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHH
Confidence 5556677777766444 7999999999999864211 12447889999999999999999999999999999999
Q ss_pred hhhhhhhHhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHHHHHHHHHHHHhcCcccc
Q 008955 348 TGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKM 426 (547)
Q Consensus 348 t~t~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpallv~~~~g~~~~~~Ll~~aqvi~s~~LPfalipll~~~n~k~iM 426 (547)
|+++++|++|+||+|+|.++|.|++.+|.++++|++++..+.+..+|.++++++|++|+++|||+++|+++++|||++|
T Consensus 312 t~~~ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 312 VGTYSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 9999999999999999999999999999999999998877766567999999999999999999999999999999998
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=3.6e-68 Score=560.18 Aligned_cols=356 Identities=40% Similarity=0.630 Sum_probs=329.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHHhhhhHHHHH
Q 008955 66 FETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTA 145 (547)
Q Consensus 66 i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~la~i~~di~eviG~A 145 (547)
++|++|+||+|||+|+|++++++++++++|++++|+|.+|||++.|.|||+|||++.+++|+.+++++++++++|++|++
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCCChH
Q 008955 146 FALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGAT 225 (547)
Q Consensus 146 ial~lLfgipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~G~~iP~~~~~~~l 225 (547)
+|+++++|+|.+.+++++++++++++++.+.+||++|++++.++.+|.+||+++++.++|||+++.+|++.|++|+.+.+
T Consensus 81 ~al~ll~g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~ 160 (358)
T PF01566_consen 81 IALNLLFGIPLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSL 160 (358)
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHH
Confidence 99999999999999999999999988866667899999999999999999999999999999999999766999975678
Q ss_pred HHHHHHhcccchhHHHHHHHHHHhhhcCCCcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 008955 226 GLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPE 305 (547)
Q Consensus 226 ~~avaiiGatimP~nlflhS~lv~~R~~~~~~~~~~~~~~~~~~~~~id~~~~l~vs~lIn~~vviv~A~vl~~~g~~~~ 305 (547)
..++|++|+|+||||+|+||++++||+++.+++.. ++++|+.++|+.+++++++++|+++++++|.++|+++..
T Consensus 161 ~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~----~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~-- 234 (358)
T PF01566_consen 161 LFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRP----DEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSE-- 234 (358)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--
Confidence 89999999999999999999999999987644221 257899999999999999999999999999999844432
Q ss_pred CcccccccchHHHHHHHHHhhh-HHHHHHHHHHHHHhhhhhhhhhhhhhhHhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q 008955 306 DQASCKDLDLNKASFLLRNVLG-SWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLI 384 (547)
Q Consensus 306 ~~~~~~~~~l~~a~~~L~~~lG-~~a~~iFaigLlaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpall 384 (547)
..+.+|++++|+|.+| +|++++|++|+++|+|||+++++++++++++++++++.+++.|+..+|...+.|+++
T Consensus 235 ------~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (358)
T PF01566_consen 235 ------VETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALI 308 (358)
T ss_pred ------hhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 2367899999999999 899999999999999999999999999999999999999988888889999999888
Q ss_pred HHHHhcccc-hHHHHHHHHHHHHhHHHHHHHHHHHHhcCcccccCCCChH
Q 008955 385 VALIGGSAG-AGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSI 433 (547)
Q Consensus 385 v~~~~g~~~-~~~Ll~~aqvi~s~~LPfalipll~~~n~k~iMG~~~n~~ 433 (547)
+++..+... |.++++++|+++++.+|++++|+++++|||++||+|||+|
T Consensus 309 ~~~~~~~~~~~~~ll~~~~v~~~~~lP~~~~~l~~l~n~~~~mG~~~n~~ 358 (358)
T PF01566_consen 309 IALLIGAPGAPVQLLIFAQVLNSLLLPFVAIPLLLLANDKKLMGEYRNSW 358 (358)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhCcccCC
Confidence 877766533 4789999999999999999999999999999999999985
No 6
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.79 E-value=0.00025 Score=77.96 Aligned_cols=117 Identities=9% Similarity=0.143 Sum_probs=75.9
Q ss_pred HHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------HHHHHhhhhhhcCCCHHHHHHhhCCCc-hHHHH
Q 008955 55 LVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALI--------IQSLAANLGVVTGKHLAEHCRNEYPKV-PNFIL 125 (547)
Q Consensus 55 Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~--------~Q~laaRlgvvTG~~Lae~~r~~y~~~-~~~~l 125 (547)
-+.+++++.+........+.++|+...|.......++++ +....-|.+ -.++.|..++||+++ .++..
T Consensus 50 s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~ 126 (471)
T TIGR02119 50 TLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN---AITINDVLKARYNNKFLVWLS 126 (471)
T ss_pred HHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccHHHHHHHHcCCCchHHHH
Confidence 345567788888877778888887633332222222222 222223333 368999999999954 45554
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 126 WVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 126 wi~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
.+...+..+.....+..|.+..++.++|+|.+.++++.++.+.+...++
T Consensus 127 ~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~iii~~~iv~iYt~~G 175 (471)
T TIGR02119 127 SISLLVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFG 175 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 4444455555666788899999999999999999888776555444444
No 7
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.71 E-value=0.00024 Score=76.57 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=101.8
Q ss_pred HhhhHHHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc--CCCHHHHHHhhCCCchHHHH
Q 008955 48 AYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVT--GKHLAEHCRNEYPKVPNFIL 125 (547)
Q Consensus 48 ~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvT--G~~Lae~~r~~y~~~~~~~l 125 (547)
+.+|=-++++...+|+|=+.==.++|...=.-.+..++++-++.+.-+.+-+|.-.-+ |.++.+..+|++||.++++.
T Consensus 4 ~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~ 83 (394)
T PF03222_consen 4 SILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVI 83 (394)
T ss_pred hHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHH
Confidence 3567778888888999988887775554444445555555556666777777777655 88999999999999998887
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh------cCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008955 126 WVLAEIAIVACDIPEVIGTAFALNML------FKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAE 199 (547)
Q Consensus 126 wi~~~la~i~~di~eviG~Aial~lL------fgipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~~ 199 (547)
|+...+...+...+-..|.+--+.-+ .++|.+.+.++..+..-.+.+. |-|.++|+...++..|.++|+..
T Consensus 84 ~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~---g~~~v~~~n~~lv~~~i~~~~~l 160 (394)
T PF03222_consen 84 GISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF---GTKAVDRINRVLVFGMIISFIIL 160 (394)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 76544333333223223332222222 2456666655443332223333 44788899899999999998887
Q ss_pred HhhcCCCHH
Q 008955 200 LGYAKPEAK 208 (547)
Q Consensus 200 ~~~~~Pd~~ 208 (547)
....-|.|.
T Consensus 161 ~~~~~p~~~ 169 (394)
T PF03222_consen 161 VVYLIPHWN 169 (394)
T ss_pred HHHHhhhcC
Confidence 776666554
No 8
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.69 E-value=8.9e-05 Score=79.79 Aligned_cols=119 Identities=13% Similarity=0.152 Sum_probs=83.0
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHHhhhhhhcCCCHHHHHHhhCCCc-hHHHHHH
Q 008955 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASC----AALIIQSLAANLGVVTGKHLAEHCRNEYPKV-PNFILWV 127 (547)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i----~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~-~~~~lwi 127 (547)
|+-+.+.+++.+......+.+.++|+.-+|..+...+ .++++...--|.+ ..+..|.+++||++. .+...-+
T Consensus 11 ~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~ 87 (407)
T TIGR00813 11 AASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVL 87 (407)
T ss_pred HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHH
Confidence 3445667889999999999999999888775544332 2333333333444 678999999999984 4444334
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 128 LAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 128 ~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
...+..+..-..++.|.+..++.++|+|.+.++++.++.+.+....+
T Consensus 88 ~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~G 134 (407)
T TIGR00813 88 SLILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFG 134 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHc
Confidence 44455555666788899999998899999999888877665555554
No 9
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.68 E-value=0.0012 Score=72.81 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=73.3
Q ss_pred HHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHH--------HHHHHHHHhhhhhhcCCCHHHHHHhhCCCch-HHHHHH
Q 008955 57 SIAYIDPGNFETDLQSGAQYKYELLWIILVASCA--------ALIIQSLAANLGVVTGKHLAEHCRNEYPKVP-NFILWV 127 (547)
Q Consensus 57 a~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~--------~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~-~~~lwi 127 (547)
.+++++.+......+...++|+...|......+. +..+....-|.+ ..+..|..++||++.. ++...+
T Consensus 53 ~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~T~~e~l~~Ryg~~~~~~~~~i 129 (483)
T PRK09442 53 IATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN---AVTLNDMLRARYQSRLLVWLASL 129 (483)
T ss_pred HHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccHHHHHHHHhCChHHHHHHHH
Confidence 3556777777777777777787755544322222 222233333443 4679999999999654 444333
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 128 LAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 128 ~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
...+..+.....+..|.+..++.++|+|.+.++++.++.+.+...++
T Consensus 130 ~~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~~iii~~~iv~iYt~~G 176 (483)
T PRK09442 130 SLLVFFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAFG 176 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Confidence 33344455556778888889999999999999888776554444443
No 10
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.67 E-value=1.6e-05 Score=85.34 Aligned_cols=114 Identities=17% Similarity=0.246 Sum_probs=84.3
Q ss_pred HHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHhhhhhhcCCCHHHHHHhhCCCch--HHHHHHHHHHH
Q 008955 56 VSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII-QSLAANLGVVTGKHLAEHCRNEYPKVP--NFILWVLAEIA 132 (547)
Q Consensus 56 va~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~-Q~laaRlgvvTG~~Lae~~r~~y~~~~--~~~lwi~~~la 132 (547)
+.++.++.+++....+.+.++|+.-+|..+...+...++ -.++.|+=-....+..|.+++||++.. +.+..+...+.
T Consensus 17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~ 96 (406)
T PF00474_consen 17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF 96 (406)
T ss_dssp HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence 446688999999999999999999999887666655444 346778887788899999999999987 66655555555
Q ss_pred HHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 008955 133 IVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLI 169 (547)
Q Consensus 133 ~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~ 169 (547)
.+.....+..|.+..++.++|+|.+.++++.++.+.+
T Consensus 97 ~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~i 133 (406)
T PF00474_consen 97 MIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVII 133 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred hhhhhhccccccccchhhccchhhhHHHHHHHHHHHH
Confidence 5566667888899999989999999888877654443
No 11
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.54 E-value=0.0017 Score=72.18 Aligned_cols=120 Identities=9% Similarity=0.000 Sum_probs=80.4
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHhhhhhhc-----CCCHHHHHHhhCCCc---hHH
Q 008955 54 FLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL--IIQSLAANLGVVT-----GKHLAEHCRNEYPKV---PNF 123 (547)
Q Consensus 54 ~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~--~~Q~laaRlgvvT-----G~~Lae~~r~~y~~~---~~~ 123 (547)
+-+.++++....+......+.++|++-.|..+- ..+++ ....+..|+-.-+ -.+..|..++||++. .+.
T Consensus 49 ~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~ 127 (502)
T PRK15419 49 LSAGASDMSGWLLMGLPGAVFLSGISESWIAIG-LTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRI 127 (502)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHH
Confidence 344566888888888888889999988786543 33332 2333455554332 247999999999964 333
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 124 ILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 124 ~lwi~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
...+...+..+.....+..|.+..++.++|+|.+.++++.++.+.+...++
T Consensus 128 ~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~iii~~~iv~iYt~~G 178 (502)
T PRK15419 128 ISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIG 178 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 333333334444445667788888998999999999988877666665555
No 12
>PRK12488 acetate permease; Provisional
Probab=98.54 E-value=0.0017 Score=72.92 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=89.0
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHHhhhhhhcCCCHHHHHHhhCC-CchHHHHHHHH
Q 008955 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII--QSLAANLGVVTGKHLAEHCRNEYP-KVPNFILWVLA 129 (547)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~--Q~laaRlgvvTG~~Lae~~r~~y~-~~~~~~lwi~~ 129 (547)
|+-+++.++..++.......+..+|+.-+|..+ +...++++ ..++.|+=-..-.+..|.+++||+ |..+...-+..
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~ 153 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence 556677788888989899999999999887653 33334332 234444443344789999999998 56777766666
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 130 EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 130 ~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
.+..+..-..++.|.+..++.++|+|.+.++++.++.+.+...++
T Consensus 154 i~~~~~yl~~q~~g~g~il~~l~gi~~~~~iii~~~i~~~Yt~~G 198 (549)
T PRK12488 154 LTVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVTFG 198 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc
Confidence 666667777888999999999999999999988877666555554
No 13
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.49 E-value=0.0015 Score=72.32 Aligned_cols=118 Identities=13% Similarity=0.111 Sum_probs=74.3
Q ss_pred HHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHH-HH-HHHHHhhhhhhc-----CCCHHHHHHhhCCCch---HHHH
Q 008955 56 VSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAA-LI-IQSLAANLGVVT-----GKHLAEHCRNEYPKVP---NFIL 125 (547)
Q Consensus 56 va~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~-~~-~Q~laaRlgvvT-----G~~Lae~~r~~y~~~~---~~~l 125 (547)
++++++....+........++|+.-.|..+ +..++ ++ .-.++.|+-..+ -.+..|.+++||++.. +.+.
T Consensus 47 ~~At~~s~~~~~G~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ 125 (487)
T TIGR02121 47 AGASDMSGWLLMGLPGALYVTGLSELWIAI-GLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIIS 125 (487)
T ss_pred HHHHHHhHHHHHhhHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHH
Confidence 345566666677777777888888777754 32222 21 222344444332 2469999999999643 3322
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 126 WVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 126 wi~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
-++..+..+.....++.|.+..++.++|+|.+.+++++++.+.+...++
T Consensus 126 ai~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~iii~~~i~~~Yt~~G 174 (487)
T TIGR02121 126 ALIILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFG 174 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhh
Confidence 2333333344445677788888888899999999988877666555554
No 14
>PRK09395 actP acetate permease; Provisional
Probab=98.48 E-value=0.0037 Score=70.32 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=86.9
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHHhhhhhhcCCCHHHHHHhhCC-CchHHHHHHHH
Q 008955 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII--QSLAANLGVVTGKHLAEHCRNEYP-KVPNFILWVLA 129 (547)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~--Q~laaRlgvvTG~~Lae~~r~~y~-~~~~~~lwi~~ 129 (547)
|+-+.+.++..++.......+..+|+.-.|..+- ..+++++ -.++.|+=-..-.+..|..++||+ |..+...-+..
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~-~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~ 155 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIG-FLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGS 155 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHH
Confidence 4556677888888888888899999987765443 3332221 223455544445789999999998 45677655555
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 130 EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 130 ~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
.+..+..-..+..|.+..++.++|+|.+.++++.++.+.+....+
T Consensus 156 iv~~~~yl~~q~~g~g~il~~~~gi~~~~~ili~~~i~~iYt~~G 200 (551)
T PRK09395 156 LVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFG 200 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Confidence 556666667888999999999999999999998887766665555
No 15
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.47 E-value=0.0015 Score=73.38 Aligned_cols=121 Identities=13% Similarity=0.166 Sum_probs=86.6
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHH--HHHHHhhhhhhcCCCHHHHHHhhCC-CchHHHHHHHH
Q 008955 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALI--IQSLAANLGVVTGKHLAEHCRNEYP-KVPNFILWVLA 129 (547)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~--~Q~laaRlgvvTG~~Lae~~r~~y~-~~~~~~lwi~~ 129 (547)
|+-+++.+++..+.......+..+|++-+|..+ +...+++ .-.++.|+--..-.+..|.+++||+ |..+....+..
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~ 153 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence 455667788888888888889999999877553 3333331 1223444444444789999999997 55677655555
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 130 EIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 130 ~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
.+..+..-..+..|.+..++.++|+|.+.+++++++.+.+....+
T Consensus 154 i~~~~~yl~~ql~g~g~il~~~~gi~~~~~iii~~~i~~~Yt~~G 198 (549)
T TIGR02711 154 LVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFG 198 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 555566667788999999999999999999988887666655555
No 16
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.44 E-value=0.00098 Score=72.05 Aligned_cols=157 Identities=12% Similarity=0.085 Sum_probs=93.8
Q ss_pred HhhhHHHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHhhhhh--hcCCCHHHHHHhhCCCchHHH
Q 008955 48 AYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASC-AALIIQSLAANLGV--VTGKHLAEHCRNEYPKVPNFI 124 (547)
Q Consensus 48 ~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i-~~~~~Q~laaRlgv--vTG~~Lae~~r~~y~~~~~~~ 124 (547)
+.+|-.++++...+|+|=+.==.++|...=+-.+-.++++-+ |.+.-.. -+|.-. -.|.++-+..+|++||..+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~-l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALL-LLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 568889999999999999988887776433322222222222 3332222 333222 246789999999999998888
Q ss_pred HHHHHHHHHHHHhhh------hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 008955 125 LWVLAEIAIVACDIP------EVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFA 198 (547)
Q Consensus 125 lwi~~~la~i~~di~------eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~ 198 (547)
.|+...+...+...+ +++.....-.+-.++|.+.+.++..+..-.+++. |.|..+|+..+++..|.++|+.
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~---g~~~v~~~n~~L~~~~ii~~~~ 159 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCV---GTSSVDLFNRFLFSAKIIFLVV 159 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 766554333322222 2222211110111456666655444332223333 4578999999999999998887
Q ss_pred HHhhcCCCHH
Q 008955 199 ELGYAKPEAK 208 (547)
Q Consensus 199 ~~~~~~Pd~~ 208 (547)
.....-|+|.
T Consensus 160 ~~~~l~p~~~ 169 (403)
T PRK15132 160 MLALMMPHIH 169 (403)
T ss_pred HHHHHHHhcC
Confidence 7776667665
No 17
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.36 E-value=0.0024 Score=69.41 Aligned_cols=121 Identities=21% Similarity=0.231 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHH
Q 008955 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWI 158 (547)
Q Consensus 79 ~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~la~i~~di~eviG~Aial~lLfgipl~~ 158 (547)
+-++.++++++++.++-...+-.|..||.+=...-|..+|++-+++.-++..+..++-..-+++-.+.+.+...++|.|+
T Consensus 53 ~si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~ 132 (442)
T COG1457 53 QSLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWA 132 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHH
Confidence 45789999999999999999999999999999999999998877665555555555554445444444433335789999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008955 159 GVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGY 202 (547)
Q Consensus 159 gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~~~~~ 202 (547)
++++.++.+.+..++ |||.++++-++.+-.+.+.|++....
T Consensus 133 ~ili~g~l~~l~~if---G~r~l~~l~~~a~~~~~~lf~~l~~~ 173 (442)
T COG1457 133 GILIIGVLMTLVTIF---GYRALHKLERIAVPLLLLLFLYLLAL 173 (442)
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887655544443 56666666666666676777766543
No 18
>PRK11375 allantoin permease; Provisional
Probab=98.34 E-value=0.0097 Score=65.93 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 008955 78 YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (547)
Q Consensus 78 y~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~ 124 (547)
++-++.+++++++..++-.+.++.|..+|.+-.-.+|..||++-..+
T Consensus 60 ~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l 106 (484)
T PRK11375 60 FSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALF 106 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchH
Confidence 46678889999999999999999999999999999999999765443
No 19
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.30 E-value=0.011 Score=64.85 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=28.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHhh
Q 008955 318 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 357 (547)
Q Consensus 318 a~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~vm 357 (547)
..++++...|+++..+..++++.+.+++..++.++..+.+
T Consensus 277 ~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l 316 (471)
T PRK11387 277 FVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRML 316 (471)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455677777888888888888888877777666654433
No 20
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.20 E-value=0.02 Score=63.77 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=32.0
Q ss_pred HhhhhHHHHHHHHHH-----HHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 008955 74 AQYKYELLWIILVAS-----CAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (547)
Q Consensus 74 A~~Gy~LLWvllla~-----i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~ 124 (547)
|.+|+++....+++. +.++.+.|++.+..-.+| +..+-.|+-+|+++++.
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf~ 83 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGFA 83 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHHH
Confidence 467777755444443 346677777776542233 66777888899887664
No 21
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.13 E-value=0.0027 Score=68.71 Aligned_cols=278 Identities=16% Similarity=0.165 Sum_probs=149.8
Q ss_pred HhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCC---------HHHHHHhhCCCchHHHHHHH
Q 008955 58 IAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKH---------LAEHCRNEYPKVPNFILWVL 128 (547)
Q Consensus 58 ~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~---------Lae~~r~~y~~~~~~~lwi~ 128 (547)
++-+|+||+..-..|=+.-|-.-+..+.++.+++......-.-|+....+. ..--+++..+++|.-.+..+
T Consensus 30 a~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~fai 109 (416)
T PF01235_consen 30 AGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAILFAI 109 (416)
T ss_pred HhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHHHHH
Confidence 457999999988888788888877777888888887777777676664432 55556565554432222111
Q ss_pred HHHHHHHH--hhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc---
Q 008955 129 AEIAIVAC--DIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA--- 203 (547)
Q Consensus 129 ~~la~i~~--di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~~~~~~--- 203 (547)
..+...+. .+.+.=-.+.+++--|++|.|...++..+.+. +..++ |.|++-++...++=+|++.|+...+..
T Consensus 110 ~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~l~~-~vi~G--GikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~ 186 (416)
T PF01235_consen 110 FLIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAILVA-LVIFG--GIKRIAKVSEKLVPFMAILYILGGLIIIII 186 (416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-HHHHc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111 12222223455665689988775544443332 22333 678899999999999999888766532
Q ss_pred C-----CCHHHhhccccccccCCCChHHHHHHHhcccchhHHHHHHHHHHhhhcCCCcchhh------------hhhhHH
Q 008955 204 K-----PEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSI------------KSICKE 266 (547)
Q Consensus 204 ~-----Pd~~~v~~G~~iP~~~~~~~l~~avaiiGatimP~nlflhS~lv~~R~~~~~~~~~------------~~~~~~ 266 (547)
+ +-..+++++-|.|+-- .=|.+|++++-- .+.+. +|+.-.+|.+. ++-+|+
T Consensus 187 n~~~ip~~~~~If~~AF~~~aa-------~GG~~G~~i~~a---i~~Gv--~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~Q 254 (416)
T PF01235_consen 187 NIDQIPAAFSLIFSSAFTPKAA-------FGGFAGSTIMMA---IRQGV--ARGLFSNEAGLGSAPIAHAAAETDHPVRQ 254 (416)
T ss_pred hhhhHHHHHHHHHHHHcCCccc-------hhhHHHHHHHHH---HHHhh--hhhhccCCCCCChhHHHHHHhcCCCcHHH
Confidence 2 2233556665555421 234455555321 22221 23221111000 000122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh
Q 008955 267 ACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSST 346 (547)
Q Consensus 267 ~~~~~~id~~~~l~vs~lIn~~vviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~iFaigLlaAg~sSt 346 (547)
.+ ...+|..+--++-+.++..++++++.- + ..++.+ ..+-..++++..+|+++.++.+++++.-++||.
T Consensus 255 Gl-~~~~~vFiDTiiVCt~TalvIl~tG~~-~----~~~~~~-----g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTi 323 (416)
T PF01235_consen 255 GL-VQMFEVFIDTIIVCTITALVILVTGVW-S----WGSGLE-----GAALTQAAFSTVLGSWGPYFVAIALFLFAFTTI 323 (416)
T ss_pred ee-eeeehHhHHHHHHHHHHHHHhhccCCC-C----CCCcch-----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 21 112222221122233333334333321 0 011111 122234578999999999999999999999999
Q ss_pred hhhhhhhhHhhhccc
Q 008955 347 ITGTYAGQYVMQGFL 361 (547)
Q Consensus 347 it~t~ag~~vm~gfl 361 (547)
++-.|-++...+=..
T Consensus 324 lg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 324 LGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHc
Confidence 988777765554434
No 22
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.12 E-value=0.025 Score=61.76 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=100.5
Q ss_pred HHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc---CCCHHHHHHhhCCCchHHHHHHHHH
Q 008955 54 FLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVT---GKHLAEHCRNEYPKVPNFILWVLAE 130 (547)
Q Consensus 54 ~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvT---G~~Lae~~r~~y~~~~~~~lwi~~~ 130 (547)
+......+|+|=+.==.++|...=+-++-.++++-++.+.--.+-.|.-.-. |.+.-+..+|++||.++.+.|+.-.
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf 105 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF 105 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence 4556668999999999999888776677677777777777766667776554 6899999999999998887665443
Q ss_pred HHH---HHHh---hhhHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 008955 131 IAI---VACD---IPEVIGTAFALNMLFK---IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELG 201 (547)
Q Consensus 131 la~---i~~d---i~eviG~Aial~lLfg---ipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~~~~ 201 (547)
+.. .... +++.+..-+ .|. +| +|.+...++..+. +..+-..|-|.++|+..+|+..+.++|+...+
T Consensus 106 f~ly~ll~aY~~~itn~l~sfl-~~q-l~~~~~~r~l~slifv~~---l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 106 FAICPLLWIYGVTITNTFMTFW-ENQ-LGFAPLNRGFVALFLLLL---MAFVIWFGKDLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hhh-cCcCCccHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 2221 222221110 111 23 4665554443322 22222235589999999999999999999888
Q ss_pred hcCCCHHH
Q 008955 202 YAKPEAKE 209 (547)
Q Consensus 202 ~~~Pd~~~ 209 (547)
..-|+|..
T Consensus 181 ~LiP~w~~ 188 (443)
T PRK13629 181 SLIPYWNS 188 (443)
T ss_pred HHHHHcCH
Confidence 88888773
No 23
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.11 E-value=0.024 Score=61.59 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=87.5
Q ss_pred HhhhHHHHHHHhhcCCchHHHH-HHHHHhhhhHHHHHHHHHH---HHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHH
Q 008955 48 AYIGPGFLVSIAYIDPGNFETD-LQSGAQYKYELLWIILVAS---CAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123 (547)
Q Consensus 48 ~~lGPG~Lva~a~idpGni~t~-~qaGA~~Gy~LLWvllla~---i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~ 123 (547)
+.+|=.++++...+|.|=+.=- ..+|+-|-++.+-.+..-. .-++.+-|..-|.. .|.++....|+..||.+++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 6789888888899999977542 2333334333332222222 22335666666664 6888999999999999888
Q ss_pred HHHHHHH---HHHHHHhh---hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 008955 124 ILWVLAE---IAIVACDI---PEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFF 197 (547)
Q Consensus 124 ~lwi~~~---la~i~~di---~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~ 197 (547)
+.|+... .+...+.+ ++++.....-..-.++|.+.+.++..+..-.+++.+ -|..|++...++..|.++|+
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~g---t~~vd~~nr~l~~~~ii~f~ 164 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWIS---SLAASRITSLFLGLKIISFV 164 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhc---hhHHHHHHHHHHHHHHHHHH
Confidence 8776432 22222222 222211111000114666655444333333334443 47777777788888888888
Q ss_pred HHHhhcCC
Q 008955 198 AELGYAKP 205 (547)
Q Consensus 198 ~~~~~~~P 205 (547)
......-|
T Consensus 165 ~~~~~l~~ 172 (415)
T PRK09664 165 IVFGSFFF 172 (415)
T ss_pred HHHHHHhh
Confidence 76655444
No 24
>PRK15049 L-asparagine permease; Provisional
Probab=98.10 E-value=0.031 Score=62.13 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=25.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHhh
Q 008955 319 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 357 (547)
Q Consensus 319 ~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~vm 357 (547)
.+.++...++++..+..+.++.+.+++..+..++..+.+
T Consensus 292 ~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l 330 (499)
T PRK15049 292 VTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRIL 330 (499)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556777777777777887777777766654333
No 25
>PRK10483 tryptophan permease; Provisional
Probab=98.09 E-value=0.0041 Score=67.43 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=91.8
Q ss_pred HHhhhHHHHHHHhhcCCchHHHH-HHHHHhhhhHHHHHHHHHHHH---HHHHHHHHhhhhhhcCCCHHHHHHhhCCCchH
Q 008955 47 FAYIGPGFLVSIAYIDPGNFETD-LQSGAQYKYELLWIILVASCA---ALIIQSLAANLGVVTGKHLAEHCRNEYPKVPN 122 (547)
Q Consensus 47 ~~~lGPG~Lva~a~idpGni~t~-~qaGA~~Gy~LLWvllla~i~---~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~ 122 (547)
.+.+|=-++++...+|.|=+.=- ..+|+-|.++++-.++.-..| ++.+-|..-|.. -|.++...-|+..||+++
T Consensus 11 ~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~g~ 88 (414)
T PRK10483 11 PSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKGWN 88 (414)
T ss_pred CcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHH
Confidence 45789999999999999987643 334444444443333222222 334666666654 578899999999999888
Q ss_pred HHHHHHHH---HHHHHHhhhhHHHHHHHHHHh---c--CCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008955 123 FILWVLAE---IAIVACDIPEVIGTAFALNML---F--KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAG 194 (547)
Q Consensus 123 ~~lwi~~~---la~i~~di~eviG~Aial~lL---f--gipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l 194 (547)
++.|+... .+...+.+. |.+--++-+ + ++|.+.+.++..+..-.+++.+ -|..|++..+++..|.+
T Consensus 89 ~i~~~s~lfl~Y~Ll~AYis---g~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~g---t~~vd~~n~~l~~~~i~ 162 (414)
T PRK10483 89 VVNGISIAFVLYILTYAYIS---ASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLS---TKAVSRMTAIVLGAKVI 162 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHH
Confidence 77665432 222222222 222111111 2 5688887766554444444544 47788888888888888
Q ss_pred HHHHHHhhcCC
Q 008955 195 CFFAELGYAKP 205 (547)
Q Consensus 195 ~F~~~~~~~~P 205 (547)
.|+......-|
T Consensus 163 ~f~~~~~~l~~ 173 (414)
T PRK10483 163 TFFLTFGSLLG 173 (414)
T ss_pred HHHHHHHHHHh
Confidence 88876655433
No 26
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.03 E-value=0.011 Score=64.48 Aligned_cols=67 Identities=9% Similarity=0.102 Sum_probs=49.3
Q ss_pred hcCCchHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHH
Q 008955 60 YIDPGNFETDLQSGAQYK---YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWV 127 (547)
Q Consensus 60 ~idpGni~t~~qaGA~~G---y~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi 127 (547)
-+...++.+.....+ +| ++-++.+++++++..++-.+.++.|..||.+-....|..||++-..+.-+
T Consensus 27 ~~~v~~~~~Ga~l~~-~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~~~~ 96 (442)
T TIGR00800 27 AFNIATWAIGALGLP-LGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLLPSL 96 (442)
T ss_pred hhhHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHHHHH
Confidence 334444444443332 33 45678888899999999999999999999999999999999776554433
No 27
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.01 E-value=0.0049 Score=65.52 Aligned_cols=71 Identities=20% Similarity=0.078 Sum_probs=38.4
Q ss_pred HHHHHHHhhhH-HHHHHHHHHHHHhhhhhhhhhhhhhhHhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 008955 318 ASFLLRNVLGS-WSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIG 389 (547)
Q Consensus 318 a~~~L~~~lG~-~a~~iFaigLlaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpallv~~~~ 389 (547)
..+.++..+|. +...+..++...+..+|.+...++-.-..++.++++.++ ++|.....++.+|.++++.+.
T Consensus 255 l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~ 326 (381)
T TIGR00837 255 LVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK-KGRFKTGLLTFLPPLVFALFY 326 (381)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCchhhhhhHHhHHHHHHHh
Confidence 34455555654 466777777777777777766665432233333332111 123334455556767666543
No 28
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.01 E-value=0.045 Score=60.81 Aligned_cols=115 Identities=13% Similarity=0.163 Sum_probs=78.0
Q ss_pred hcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHhhhhhhc----CCCHHHHHHhhCC-CchHHHHHHHHHHHH
Q 008955 60 YIDPGNFETDLQSGAQYKYELLWIILVASCAAL-IIQSLAANLGVVT----GKHLAEHCRNEYP-KVPNFILWVLAEIAI 133 (547)
Q Consensus 60 ~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~-~~Q~laaRlgvvT----G~~Lae~~r~~y~-~~~~~~lwi~~~la~ 133 (547)
+..+..+..........|+.-+|..+...+..+ ..-..+.|+=..+ -.++.|..++||+ |..+.+.-+...+..
T Consensus 53 ~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~ 132 (493)
T COG0591 53 DTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSALIIIVFF 132 (493)
T ss_pred HHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 344444444455555569999999888643333 4445555666666 5679999999999 666766555555566
Q ss_pred HHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 134 VACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 134 i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
+..-..++.|.+..++..+|+|.+.+..+....+.+.-+++
T Consensus 133 i~yia~ql~~~~~~~~~~~gi~~~~~~~~~~~~v~~Yt~~g 173 (493)
T COG0591 133 IPYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLG 173 (493)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHc
Confidence 66666778888888888999998888877665554444444
No 29
>PRK11017 codB cytosine permease; Provisional
Probab=97.99 E-value=0.04 Score=59.61 Aligned_cols=116 Identities=15% Similarity=0.126 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhcCCchH
Q 008955 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVAC-DIPEVIGTAFALNMLFKIPVW 157 (547)
Q Consensus 79 ~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~la~i~~-di~eviG~Aial~lLfgipl~ 157 (547)
+-++.+++++++..++--+.++.|..+|.+-...+|..||++-..+.-++..+..++- -++..++ +.+++-++|+|.+
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~-~~~l~~~~~~~~~ 121 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMF-AIPVVKATGLDIN 121 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhCCCHH
Confidence 4567888889999999999999999999999999999999776554433322222211 1233332 3445556788877
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 008955 158 IGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFA 198 (547)
Q Consensus 158 ~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~ 198 (547)
.+.++..+......+. |+|++|++.++..-.+.+.+++
T Consensus 122 ~~~~i~~~l~~~~~~~---G~~~i~~~~~~~~p~~~~~~~~ 159 (404)
T PRK11017 122 LLIVLSGLLMTVTAYF---GISALTILSRIAVPAIALLGGY 159 (404)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555444444444 3455554444443344444443
No 30
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.97 E-value=0.058 Score=60.76 Aligned_cols=119 Identities=12% Similarity=0.160 Sum_probs=84.3
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHH---H-HHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCc-hHHHHHH
Q 008955 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILV---A-SCAALIIQSLAANLGVVTGKHLAEHCRNEYPKV-PNFILWV 127 (547)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvlll---a-~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~-~~~~lwi 127 (547)
|+-+.++++...........+.++||+-+|..+- + .++.+++-..--|.+. .+..|..++||+++ .++...+
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i 116 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVI 116 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHH
Confidence 4455667788888888888888889887766531 1 2344555555566665 47999999999844 5665555
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 128 LAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 128 ~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
...+..+.....+..|.+..++.++|+|.+.++++.++.+.+...++
T Consensus 117 ~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~~iYt~~G 163 (552)
T TIGR03648 117 CAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLG 163 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 55555566666777888999999999999999988887665555554
No 31
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.96 E-value=0.017 Score=62.50 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh------hhhhc-CCCHHHHHHhhCCCchHHHHHHHHHHHHH------HHhhhhHHHHHHH
Q 008955 81 LWIILVASCAALIIQSLAAN------LGVVT-GKHLAEHCRNEYPKVPNFILWVLAEIAIV------ACDIPEVIGTAFA 147 (547)
Q Consensus 81 LWvllla~i~~~~~Q~laaR------lgvvT-G~~Lae~~r~~y~~~~~~~lwi~~~la~i------~~di~eviG~Aia 147 (547)
.|..+++.+.++++....+| +.--. |+++.|..++.+||+.+.+.++.-.+... +....+..+.-+-
T Consensus 33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~ 112 (397)
T TIGR00814 33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLV 112 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666 34444 88999999999999988765443222211 2222222222111
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 008955 148 LNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEA 207 (547)
Q Consensus 148 l~lLfgipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~~~~~~~Pd~ 207 (547)
-.++...|.+... ..+..+++.+.-+.|.|.+.|+..+++..+.+.++...+..-|.|
T Consensus 113 ~~~~~~~p~~~i~--~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~ 170 (397)
T TIGR00814 113 NQLGTAPPLRGLL--SLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW 170 (397)
T ss_pred HhcCCCCcHHHHH--HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1122234444211 122223333444557899999988888777777776666555544
No 32
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.94 E-value=0.056 Score=59.43 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=27.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHh
Q 008955 319 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYV 356 (547)
Q Consensus 319 ~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~v 356 (547)
.+..+..+|++...+..++.+.+.+++..+...++.++
T Consensus 271 ~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~ 308 (473)
T TIGR00905 271 AAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEV 308 (473)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778998888888888888888777666655433
No 33
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.90 E-value=0.0055 Score=66.56 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=48.4
Q ss_pred HHhhcCCchHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHH
Q 008955 57 SIAYIDPGNFETDLQSGAQYK---YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVL 128 (547)
Q Consensus 57 a~a~idpGni~t~~qaGA~~G---y~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~ 128 (547)
..+-+-+.++.+-... ..+| ++-+..++++++++.++-...++.|.-||.+-....|..||++-+.+.-++
T Consensus 19 ~~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l~~~l 92 (440)
T PF02133_consen 19 FGANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKLPSLL 92 (440)
T ss_dssp CHHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHHHHHH
Confidence 3344555555555554 4555 346778888999999999999999999999999999999998766554333
No 34
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.88 E-value=0.017 Score=60.28 Aligned_cols=147 Identities=17% Similarity=0.228 Sum_probs=96.2
Q ss_pred HHHHHHhhhHHHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh-cCCCHHHHHHhhCCCch
Q 008955 43 WKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVV-TGKHLAEHCRNEYPKVP 121 (547)
Q Consensus 43 ~~~~~~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvv-TG~~Lae~~r~~y~~~~ 121 (547)
.|..++++| -++.+++---=++ .|-=..||+.=.|-+.+++++-.+.=.....+|-. --+|..|..+...|+++
T Consensus 6 ~~~~f~~ig--~~vGAGfAsGqEi---~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~ 80 (349)
T COG3949 6 MRWAFAFIG--TVVGAGFASGQEI---MQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKF 80 (349)
T ss_pred HHHHHHHHH--HhhcccccchHHH---HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHH
Confidence 455566666 4444443322233 23345688888888888888777776666666655 45678888888888777
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 008955 122 NFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCF 196 (547)
Q Consensus 122 ~~~lwi~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F 196 (547)
....=++..+..+.+..-...|++..++--+|+|.|+|.+++.....+.++++| .++++++...++=++..+.
T Consensus 81 ~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~~--vegi~tvn~iI~P~LIi~l 153 (349)
T COG3949 81 AKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLGR--VEGIITVNGIITPFLIIIL 153 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHhc--ccceeeeheeHHHHHHHHH
Confidence 666544444455555555556777677778999999998777766666667765 5778877665554444443
No 35
>PRK10484 putative transporter; Provisional
Probab=97.84 E-value=0.091 Score=58.75 Aligned_cols=111 Identities=15% Similarity=0.089 Sum_probs=59.1
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHH
Q 008955 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL-IIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEI 131 (547)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~-~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~l 131 (547)
|+=+.++++..++.......+.++|+.-+|..+...+... ..-..+.|+--.-=.+..|..++||++..+...-....+
T Consensus 46 ~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i 125 (523)
T PRK10484 46 AGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLI 125 (523)
T ss_pred HHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHHHHHHHHH
Confidence 3445566788888888888888888876532222221111 111123333322234799999999998765543222222
Q ss_pred HHHHHhhhhH-HHHHHHHHH------hcCCchHHHHHHH
Q 008955 132 AIVACDIPEV-IGTAFALNM------LFKIPVWIGVLLT 163 (547)
Q Consensus 132 a~i~~di~ev-iG~Aial~l------Lfgipl~~gvlit 163 (547)
..+...++.. .+.+.+++- ++|+|.+.++.++
T Consensus 126 ~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~ 164 (523)
T PRK10484 126 GYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLL 164 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHH
Confidence 2222222222 233444432 4688877766543
No 36
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.78 E-value=0.087 Score=56.64 Aligned_cols=93 Identities=23% Similarity=0.255 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhh-hHhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhcccch
Q 008955 316 NKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAG-QYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGA 394 (547)
Q Consensus 316 ~~a~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag-~~vm~gfl~~~~~~~~r~l~tr~iaivpallv~~~~g~~~~ 394 (547)
+-+.+.-+..+|+++..+.++..+-|.+++.+.-+.+. ++.-+ ... | ..++...... .+.+.+++. .+.
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~-~~~-k---~~y~~~v~~~-~l~s~~ia~----~Gl 324 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHK-LVP-K---LSYKTWVIVF-TLFSFIVAN----LGL 324 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-C---CCHHHHHHHH-HHHHHHHHH----hCH
Confidence 33556678899999999999999999999887554443 44332 211 1 2221111111 122222222 257
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 008955 395 GQLIIIASMILSFELPFALVPLLK 418 (547)
Q Consensus 395 ~~Ll~~aqvi~s~~LPfalipll~ 418 (547)
++++.++.=+..+.-|.+.+-++.
T Consensus 325 ~~Ii~~~~PvL~~~YP~~i~lill 348 (378)
T TIGR00796 325 TQIISISIPVLMIIYPLAIVLILL 348 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888777788888888877665
No 37
>PRK10249 phenylalanine transporter; Provisional
Probab=97.76 E-value=0.1 Score=57.15 Aligned_cols=105 Identities=15% Similarity=0.281 Sum_probs=50.6
Q ss_pred hhHHHHHHHh-hcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHH-HH
Q 008955 50 IGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL-WV 127 (547)
Q Consensus 50 lGPG~Lva~a-~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~l-wi 127 (547)
+|=|-.+..+ ++.||...+..-.++-.+|-+ .-++....++.+.|++.|+=. +| +.....++.+|+.+.+.. |.
T Consensus 31 i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li--~~~~~~~~~~~~aEl~~~~P~-~G-g~~~y~~~~~g~~~gf~~gw~ 106 (458)
T PRK10249 31 IALGGAIGTGLFLGIGPAIQMAGPAVLLGYGV--AGIIAFLIMRQLGEMVVEEPV-SG-SFAHFAYKYWGPFAGFLSGWN 106 (458)
T ss_pred hhhhcccchhHHHHHHHHHHhcCcHHHHHHHH--HHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhChHHHHHHHHH
Confidence 4444444433 566666554322222222111 223334455566777776655 45 677788888998766543 22
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhc-CCchHHH
Q 008955 128 LAEIAIVACDIPEVIGTAFALNMLF-KIPVWIG 159 (547)
Q Consensus 128 ~~~la~i~~di~eviG~Aial~lLf-gipl~~g 159 (547)
. -++.......|..+.+.-++.++ +.|.|..
T Consensus 107 ~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 138 (458)
T PRK10249 107 Y-WVMFVLVGMAELTAAGIYMQYWFPDVPTWIW 138 (458)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHcCCcCcHHHH
Confidence 1 11112222345544444444444 3555543
No 38
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.65 E-value=0.13 Score=55.24 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHhc----
Q 008955 78 YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACD-IPEVIGTAFALNMLF---- 152 (547)
Q Consensus 78 y~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~la~i~~d-i~eviG~Aial~lLf---- 152 (547)
++-+..+++++++...+--+.++.|..||.+-.-..|..||++-+.+.-++-.+..++-. ++-+.| +.+++.++
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~g-g~~l~~~~~~~~ 107 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVG-AKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 677888899999999999999999999999999999999998766554333333333222 222222 23333333
Q ss_pred CC-chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh--hcCCCHHH
Q 008955 153 KI-PVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELG--YAKPEAKE 209 (547)
Q Consensus 153 gi-pl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~~~~--~~~Pd~~~ 209 (547)
|. +...+..+.++... ..--+|+|+++++.++.+-++.+.+++... ..+.+.++
T Consensus 108 ~~~~~~~~~~i~~~l~~---~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 164 (386)
T TIGR02358 108 GEESPMLWILIVGILVT---LWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSE 164 (386)
T ss_pred CCCchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 32 23333333333222 222356676666666655555555554332 33555444
No 39
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.61 E-value=0.12 Score=56.36 Aligned_cols=281 Identities=16% Similarity=0.131 Sum_probs=132.7
Q ss_pred HHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHhhhhhhcCCC-H----HHHHHhhC-CCchHHHHH
Q 008955 57 SIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALII----QSLAANLGVVTGKH-L----AEHCRNEY-PKVPNFILW 126 (547)
Q Consensus 57 a~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~----Q~laaRlgvvTG~~-L----ae~~r~~y-~~~~~~~lw 126 (547)
-++-+|.||+..-..+=+.-|..-+..+.++.+++... -.++-|+-.-.+++ . .--+++.. +||...++-
T Consensus 57 la~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~lg~lfa 136 (425)
T TIGR00835 57 LAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRWLAVLFA 136 (425)
T ss_pred HHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccHHHHHHH
Confidence 34568888887777774444555544444444444444 44444444322333 1 23344443 355444322
Q ss_pred HHHHHHHHH-HhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh---
Q 008955 127 VLAEIAIVA-CDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGY--- 202 (547)
Q Consensus 127 i~~~la~i~-~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~~~~~--- 202 (547)
+. .++..+ ...-+.--.+..++-.+++|.|...++.++.+... .++ |.|++-++...++-+|++.|+...+.
T Consensus 137 ~~-~i~~f~~~~~~Q~nsi~~~~~~~~~~~~~v~~i~l~~l~~~v-i~G--Gik~Ia~v~~~lvP~m~~~Y~~~~l~ii~ 212 (425)
T TIGR00835 137 VF-LIASFGIGNMVQANAIASALSNAFNVPKLVTGIVLTVLTALI-IFG--GLKRIAKISSVVVPFMALLYVIMALYIII 212 (425)
T ss_pred HH-HHHHHhhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-Hhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 111111 01111111222333346889887554444332222 222 67888888888888888887544332
Q ss_pred -----cCCCHHHhhccccccccCCCChHHHHHHHhcccchhHHHHHHHHHHhhhcCCCcchhh------------hhhhH
Q 008955 203 -----AKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSI------------KSICK 265 (547)
Q Consensus 203 -----~~Pd~~~v~~G~~iP~~~~~~~l~~avaiiGatimP~nlflhS~lv~~R~~~~~~~~~------------~~~~~ 265 (547)
..|-...++++-|-|+- .+=|.+|++++-- .+.+. +|+.-.+|.+. ++.+|
T Consensus 213 ~n~~~lp~~~~~If~~AF~~~a-------~~GG~~G~~v~~a---i~~Gv--~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~ 280 (425)
T TIGR00835 213 MNIEQLPAVISLIFRSAFGGDA-------AAGGFAGSTVAQA---IMIGV--KRGLFSNEAGMGSAPIAAAAAQVSHPVR 280 (425)
T ss_pred HhHHHHHHHHHHHHHHhCCchh-------hHhHHHHHHHHHH---HHHhh--HHHHhccccccCcHHHHHHHhcCCCcHH
Confidence 23444556666555441 1233445443211 11110 12110000000 00013
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q 008955 266 EACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSS 345 (547)
Q Consensus 266 ~~~~~~~id~~~~l~vs~lIn~~vviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~iFaigLlaAg~sS 345 (547)
+.+ ...+|..+--++.+.++..++++++. +.+ +++.+ ...+.+ ++++..+|.|+.++.++.++.-++||
T Consensus 281 QGl-~~~~~vfiDTivvCt~Talvil~tg~--~~~---~~~~~---g~~lt~--~af~~~~g~~g~~~v~i~~~lFaftT 349 (425)
T TIGR00835 281 QGL-VQMLGVFIDTMIVCTATALVILLSGV--WNN---GEGLS---GAQLTQ--QALSYGLGSFGAVFVAVALFLFAFST 349 (425)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHcCc--cCC---CCCCc---HHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 321 12333333222333344444444332 110 01111 112333 56888889999999999999999999
Q ss_pred hhhhhhhhhHhhhcccCCC
Q 008955 346 TITGTYAGQYVMQGFLDLR 364 (547)
Q Consensus 346 tit~t~ag~~vm~gfl~~~ 364 (547)
.++-.|-++...+=..+.|
T Consensus 350 ii~~~yyge~~~~yl~~~~ 368 (425)
T TIGR00835 350 IIGWYYYGEKNAEFLKGNK 368 (425)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 9988877765554333433
No 40
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.51 E-value=0.23 Score=54.49 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=40.8
Q ss_pred hHHHHHHhhhHHHHHH-HhhcCCchHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCC
Q 008955 42 SWKNLFAYIGPGFLVS-IAYIDPGNFETDLQSGAQ-YKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPK 119 (547)
Q Consensus 42 ~~~~~~~~lGPG~Lva-~a~idpGni~t~~qaGA~-~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~ 119 (547)
+.++... +|=|-++. .-+..||...+. +|.. .=+..+..-++.....+.+-|++.++=.. |-+..+-.++.+|+
T Consensus 5 ~~~~~~~-l~vg~~IGsGif~~~~~~~~~--~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~-gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 5 KQRHIQM-IALGGTIGTGLLVGSGTALAT--GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVV-SGSFATYASRFVDP 80 (478)
T ss_pred cHHHHHH-HHHhccccchhhhcchhHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcCc
Confidence 3444432 44444443 335566666543 3321 11112222233455566677888777643 33566777888888
Q ss_pred chHHH
Q 008955 120 VPNFI 124 (547)
Q Consensus 120 ~~~~~ 124 (547)
.+.+.
T Consensus 81 ~~gf~ 85 (478)
T TIGR00913 81 AFGFA 85 (478)
T ss_pred HHHHH
Confidence 77654
No 41
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.48 E-value=0.26 Score=54.09 Aligned_cols=144 Identities=11% Similarity=0.128 Sum_probs=67.5
Q ss_pred CcchHHHHHHhhhHHHHHHHh-hcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhC
Q 008955 39 DKTSWKNLFAYIGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEY 117 (547)
Q Consensus 39 ~~~~~~~~~~~lGPG~Lva~a-~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y 117 (547)
|+.+.|+... +|=|-.+..+ ++.||...++.-.++-++| +..-+.....++.+-|++.|+=. +| +..+-.++.+
T Consensus 12 r~L~~~~~~~-i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~--~i~gi~~~~v~~s~aEl~s~~P~-aG-g~y~~~~~~~ 86 (456)
T PRK10238 12 RGLKNRHIQL-IALGGAIGTGLFLGSASVIQSAGPGIILGY--AIAGFIAFLIMRQLGEMVVEEPV-AG-SFSHFAYKYW 86 (456)
T ss_pred ccCcHHHHHH-HHhhccccchHHHhhHHHHHhcCcHHHHHH--HHHHHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHc
Confidence 3444555433 4444444443 4677776665422333332 22222334444556677777765 44 5666777889
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 008955 118 PKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLF-KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAF 187 (547)
Q Consensus 118 ~~~~~~~lwi~~~la~i~~di~eviG~Aial~lLf-gipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~ 187 (547)
|+...+..-...-++.+.....|..+.+.-++..+ +.|.|...++..+....+-..+..-+.++|.++..
T Consensus 87 g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 87 GSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAI 157 (456)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 98776553111111222222344443443444444 35666655443322222212222224567765433
No 42
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.46 E-value=0.26 Score=53.68 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=27.6
Q ss_pred HHHHH--HHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 008955 80 LLWII--LVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (547)
Q Consensus 80 LLWvl--lla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~ 124 (547)
+.|++ ++....++.+-|++.++=.. | +.-.-.++.+|+.+.+.
T Consensus 47 l~~li~~v~~l~~al~~aEl~s~~P~~-G-G~y~y~~~~~g~~~gf~ 91 (445)
T PRK11357 47 LAFVIGGLIVIPQMCVYAELSTAYPEN-G-ADYVYLKNAGSRPLAFL 91 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-C-CceeeHHHhcCChhHHH
Confidence 34544 45567778888888887653 3 33345667788876554
No 43
>PRK11021 putative transporter; Provisional
Probab=97.34 E-value=0.33 Score=52.28 Aligned_cols=36 Identities=8% Similarity=-0.025 Sum_probs=25.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 008955 318 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAG 353 (547)
Q Consensus 318 a~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag 353 (547)
..+.+++.+|+++..++.+..+.+.+++..+..++.
T Consensus 248 ~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~ 283 (410)
T PRK11021 248 LPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSF 283 (410)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888988877778777777777766555544
No 44
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.33 E-value=0.39 Score=52.79 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=30.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHh
Q 008955 318 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYV 356 (547)
Q Consensus 318 a~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~v 356 (547)
....++..+|+++..+..++.+.+.+++..+.++++.+.
T Consensus 266 ~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~ 304 (468)
T TIGR03810 266 MAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEI 304 (468)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778889999999999999988888887777765433
No 45
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.31 E-value=0.38 Score=52.42 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHH
Q 008955 85 LVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123 (547)
Q Consensus 85 lla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~ 123 (547)
+.+.+.++.+-|++.++=. +| +.-+-.|+.|||.+.+
T Consensus 51 ~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf 87 (445)
T PRK10644 51 IGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGY 87 (445)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHH
Confidence 5566777888888888754 34 5666788889998765
No 46
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.28 E-value=0.43 Score=52.46 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=20.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 008955 320 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQ 354 (547)
Q Consensus 320 ~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~ 354 (547)
+.++...+++...++.+.++.+.+++..+..++..
T Consensus 284 ~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~s 318 (469)
T PRK11049 284 ELFVLVGLPAAASVINFVVLTSAASSANSGVFSTS 318 (469)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445666666666666666666655555443
No 47
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.24 E-value=0.46 Score=51.81 Aligned_cols=267 Identities=21% Similarity=0.209 Sum_probs=130.1
Q ss_pred HHHHHHh--hcCCchHH-----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCC-CchHHH
Q 008955 53 GFLVSIA--YIDPGNFE-----TDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYP-KVPNFI 124 (547)
Q Consensus 53 G~Lva~a--~idpGni~-----t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~-~~~~~~ 124 (547)
||++|++ .+|=||+= ++...|+.|= ++|. +.....++++...=--+|--++++..+..|+.-| |++.+.
T Consensus 13 GFILAa~GsAVGLGNiWrFPy~~~~nGGgAFl--l~yl-i~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~~ 89 (439)
T COG0733 13 GFILAAAGSAVGLGNIWRFPYMAGENGGGAFL--LPYL-IFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWI 89 (439)
T ss_pred HHHHHHHHHHhcccccccCCeEeeecCcchHH--HHHH-HHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchhh
Confidence 4555544 78888873 3444444442 2222 2223344444444444566688999999988866 677776
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH-----------------HHHhcC--Cc-hHHHH---HHHHHHHHHHHHHHhhhhHH-
Q 008955 125 LWVLAEIAIVACDIPEVIGTAFA-----------------LNMLFK--IP-VWIGV---LLTGFSTLILLALQQYGVRK- 180 (547)
Q Consensus 125 lwi~~~la~i~~di~eviG~Aia-----------------l~lLfg--ip-l~~gv---lit~~~~~~lL~l~~yg~r~- 180 (547)
=|+-...+.+...-=.++|.-+. ..-.|+ +. .+..+ +++.+.+. +.-+.|++|
T Consensus 90 G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~---~iv~~GV~~G 166 (439)
T COG0733 90 GWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTA---LIVSRGVKKG 166 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHH---HHHHHhHHhh
Confidence 55522211111100111111110 000110 11 12111 22222222 223446666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--cCCCHHHhhccccccccCC---CChHHHHHHH------hcccchhHHHHHHHHHHh
Q 008955 181 LEFLIAFLVFTMAGCFFAELGY--AKPEAKEVLHGLFVPQLKG---NGATGLAISL------LGAMVMPHNLFLHSALVL 249 (547)
Q Consensus 181 lE~~~~~Lv~vm~l~F~~~~~~--~~Pd~~~v~~G~~iP~~~~---~~~l~~avai------iGatimP~nlflhS~lv~ 249 (547)
+||..++++=.+.++|++.++. ..|...|=.+-++.|..+. .+.+..|.|- +|..+| +-+.|++-|
T Consensus 167 IEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~m---itYsSYL~k 243 (439)
T COG0733 167 IEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIM---ITYSSYLSK 243 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHH---HHHHhhcCc
Confidence 9999999888888888877764 5777766666667776432 1112122221 233233 224555432
Q ss_pred hhcCCCcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhHH
Q 008955 250 SRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSW 329 (547)
Q Consensus 250 ~R~~~~~~~~~~~~~~~~~~~~~id~~~~l~vs~lIn~~vviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~ 329 (547)
+++. .+.+..-...|+.++++..+.|=-++-..+.. +++...-.=..+.++-+.+ | +|+.
T Consensus 244 ~~~l----------~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~--------~~~GpgL~Fi~LP~if~~m-p-~G~~ 303 (439)
T COG0733 244 KSDL----------VSSALSIVLLNTLISLLAGLVIFPALFSFGAD--------ASQGPGLVFIVLPAVFNQM-P-LGTL 303 (439)
T ss_pred ccch----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCCCCeeehhHHHHHHHhC-c-hhHH
Confidence 2221 14555556777777766554432222111111 1111000011222333333 3 7777
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 008955 330 SSKLFAIALLASGQSSTIT 348 (547)
Q Consensus 330 a~~iFaigLlaAg~sStit 348 (547)
-..+|-+.++.|+.||.+.
T Consensus 304 ~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 304 FGILFFLLLLFAALTSAIS 322 (439)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999874
No 48
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.23 E-value=0.45 Score=51.68 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHH
Q 008955 86 VASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL 125 (547)
Q Consensus 86 la~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~l 125 (547)
.....++.+-|++.|+-.. | +...-.++.+||.+++..
T Consensus 52 ~~~~~a~~~aEl~s~~P~~-G-g~y~~~~~~~G~~~gf~~ 89 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPTA-G-GGYGFARRAFGPWGGFLA 89 (442)
T ss_pred HHHHHHHHHHHHHHHcCCC-C-CHHHHHHHHhCcHHHHHH
Confidence 3455667799999998763 3 456677888999876653
No 49
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.15 E-value=0.57 Score=51.21 Aligned_cols=325 Identities=18% Similarity=0.209 Sum_probs=159.5
Q ss_pred HHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh-cCCCHHHHHHhhCCCchHHHHHHHHHH
Q 008955 53 GFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVV-TGKHLAEHCRNEYPKVPNFILWVLAEI 131 (547)
Q Consensus 53 G~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvv-TG~~Lae~~r~~y~~~~~~~lwi~~~l 131 (547)
|+..=+-+.|+||+.-=..-|.+.|-+..|..+--.+-+..+=-++ .+.+. +|.+..+.-++ -||+....+....-+
T Consensus 9 g~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lg-via~~~~~~~~~~l~~~-v~~~f~~if~~~i~l 86 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLG-VIAVAKSGGGIEDLASR-VGPKFALIFTILIYL 86 (427)
T ss_pred HHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHHhcc-cCcHHHHHHHHHHHH
Confidence 4555567899999999999999999888888776666666555554 44444 55566666655 577777777665554
Q ss_pred HHH-HHhhhhHHHH--HHHHHHhcC----CchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHhh
Q 008955 132 AIV-ACDIPEVIGT--AFALNMLFK----IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTM--AGCFFAELGY 202 (547)
Q Consensus 132 a~i-~~di~eviG~--Aial~lLfg----ipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm--~l~F~~~~~~ 202 (547)
++- ..-++-..-+ .++..-+++ ++.+.-.++....++.+.. ++ -|.+|++=++|-=++ .+..++....
T Consensus 87 ~IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~-~p--~kivd~iGk~LTP~LL~~l~ilii~~i 163 (427)
T PF05525_consen 87 SIGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSL-NP--SKIVDRIGKFLTPILLILLAILIIKGI 163 (427)
T ss_pred HHHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHh-ch--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 431 1112211101 112222233 3344333333322322222 22 245555444332111 1122222223
Q ss_pred cCCCHH--HhhccccccccC---C--CCh-HHHHHHH--hcccchhHHHHHHHHHHhhhcCCCcchhhhhhhHHhhHHHH
Q 008955 203 AKPEAK--EVLHGLFVPQLK---G--NGA-TGLAISL--LGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYM 272 (547)
Q Consensus 203 ~~Pd~~--~v~~G~~iP~~~---~--~~~-l~~avai--iGatimP~nlflhS~lv~~R~~~~~~~~~~~~~~~~~~~~~ 272 (547)
.+|.-. +. ++- .++-| + +|+ .++++|- .|.+| .++ .++|+.++ + |+..|+..
T Consensus 164 ~~p~g~~~~~-~~~-y~~~~f~~Gf~eGY~TMD~laal~Fg~iI------i~~--i~~~g~~~-~-------k~~~~~~~ 225 (427)
T PF05525_consen 164 FSPIGPPQAP-SGA-YASNPFFKGFLEGYQTMDALAALAFGIII------INA--IRQKGYKD-K-------KEIKKYTI 225 (427)
T ss_pred HcCCCCcccc-chh-hhhhHHHHHHHHHHhhhhHHHHHHHHHHH------HHH--HHHhCCCC-H-------HHHHHHHH
Confidence 333211 10 000 00000 0 111 1222222 23222 222 24454432 1 33345444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 008955 273 IESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYA 352 (547)
Q Consensus 273 id~~~~l~vs~lIn~~vviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~a 352 (547)
.-..++.+.-.++-....-++|..- +..+++.+ ..+-..+.-+.++|+.+..++++..+.|++++.+.=+-+
T Consensus 226 ~ag~ia~~lL~~IY~gL~~lGa~~~---~~~~~~~~-----g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a 297 (427)
T PF05525_consen 226 KAGLIAGILLALIYGGLAYLGATSS---GSFPDDIN-----GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISA 297 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCc---ccccCCCC-----HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544555555555555431 11111111 122244455778999999999999999999988865554
Q ss_pred h-hHhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHHHHHHHHHHH
Q 008955 353 G-QYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLK 418 (547)
Q Consensus 353 g-~~vm~gfl~~~~~~~~r~l~tr~iaivpallv~~~~g~~~~~~Ll~~aqvi~s~~LPfalipll~ 418 (547)
+ +|.-| ..+ |.+ .|.+. .... +.+.+++- -+.++++.++.=+..+.=|.+.+-++.
T Consensus 298 ~a~yf~~-~~~-kis--Y~~~v-~i~~-i~S~~ian----~Gl~~Ii~~s~PiL~~iYP~~IvLIll 354 (427)
T PF05525_consen 298 CAEYFSE-LFP-KIS--YKVWV-IIFT-IFSFIIAN----LGLDQIIKISVPILMFIYPVAIVLILL 354 (427)
T ss_pred HHHHHHH-Hhc-ccC--hHHHH-HHHH-HHHHHHHH----hCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3 44443 333 322 11111 1222 22333322 256788888777788888888876554
No 50
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.13 E-value=0.61 Score=51.30 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=22.3
Q ss_pred HHHHHHHhhhH-HHHHHHHHHHHHhhhhhhhhhhhhh
Q 008955 318 ASFLLRNVLGS-WSSKLFAIALLASGQSSTITGTYAG 353 (547)
Q Consensus 318 a~~~L~~~lG~-~a~~iFaigLlaAg~sStit~t~ag 353 (547)
..+.+...+|. ++..++.+.++.+.+++..+..++.
T Consensus 291 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (482)
T TIGR00907 291 IAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTAN 327 (482)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666776 6666666666666666666555554
No 51
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.12 E-value=0.59 Score=50.96 Aligned_cols=79 Identities=9% Similarity=0.106 Sum_probs=42.7
Q ss_pred chHHHHHHhhhHHHHHHH-hhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCC
Q 008955 41 TSWKNLFAYIGPGFLVSI-AYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPK 119 (547)
Q Consensus 41 ~~~~~~~~~lGPG~Lva~-a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~ 119 (547)
.+.|+.. .++=|-++.. -++.||......-.++-. ..+..-++....++.+-|++.|+-.. | +..+-.++.+|+
T Consensus 14 L~~~~~~-~i~ig~~IGsGif~~~g~~~~~~G~~~~i--~~~i~~v~~~~~a~~~aEl~s~~P~~-G-g~~~~~~~~~g~ 88 (452)
T TIGR01773 14 LKTRHVT-MLSIAGVIGAGLFVGSGSAIASAGPAALL--AYLLAGLLVVFIMRMLGEMAVANPDT-G-SFSTYADDAIGR 88 (452)
T ss_pred CcHHHHH-HHHHhhhhhchHHHhhHHHHHhcCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCC-C-CHHHHHHHHhCc
Confidence 3344433 3444444433 256666555432211111 22223334456677788888877552 2 567888899999
Q ss_pred chHHH
Q 008955 120 VPNFI 124 (547)
Q Consensus 120 ~~~~~ 124 (547)
.+.+.
T Consensus 89 ~~gf~ 93 (452)
T TIGR01773 89 WAGFT 93 (452)
T ss_pred HHHHH
Confidence 87654
No 52
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.10 E-value=0.62 Score=50.74 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=90.2
Q ss_pred hhHHHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCC---CHHHHHHhhCCCchHHHHH
Q 008955 50 IGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGK---HLAEHCRNEYPKVPNFILW 126 (547)
Q Consensus 50 lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~---~Lae~~r~~y~~~~~~~lw 126 (547)
.|=-++++-..+|.|=+.-=.+++-..=+-.+-.++++-++.+.-+++-.|.-.-+++ +..+..++++||+++++..
T Consensus 12 ~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~ 91 (415)
T COG0814 12 LGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIG 91 (415)
T ss_pred HHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHH
Confidence 3444556666788887776666554322222333344555666667777776666554 7899999999999999876
Q ss_pred HHHHHHHHHH----------hhhhHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008955 127 VLAEIAIVAC----------DIPEVIGTAFALNMLFK-IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGC 195 (547)
Q Consensus 127 i~~~la~i~~----------di~eviG~Aial~lLfg-ipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~ 195 (547)
+...+...+. +++++++.-.. .. .+...+.++....-..+.+.++ +...|....++..+.++
T Consensus 92 ~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~----~~~~~r~~~~lif~~~~~~l~~~~~---~~~lk~ts~l~~~~v~~ 164 (415)
T COG0814 92 LSYFFALYGLLVAYIVGIGNLLASFLGNQFG----LNPLPRKLGSLIFALVLAFLSWLGT---LAVLKITSLLVFGKVIY 164 (415)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhcc----cCCcchHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHHHHHH
Confidence 5544333322 22332222111 11 4566555544433333444444 56777777888888877
Q ss_pred HHHHHhhcCCCHHH
Q 008955 196 FFAELGYAKPEAKE 209 (547)
Q Consensus 196 F~~~~~~~~Pd~~~ 209 (547)
++...+.--|.|..
T Consensus 165 ~~~l~~~~~~~~~~ 178 (415)
T COG0814 165 LVLLVVYLIPHWNP 178 (415)
T ss_pred HHHHHHHHhcccCH
Confidence 77777766666543
No 53
>TIGR00909 2A0306 amino acid transporter.
Probab=96.85 E-value=0.94 Score=48.84 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=28.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHhh
Q 008955 319 SFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVM 357 (547)
Q Consensus 319 ~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~vm 357 (547)
....+...|++...+..++...+.+++..+..++..+..
T Consensus 267 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~ 305 (429)
T TIGR00909 267 SLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVL 305 (429)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888888888877766654443
No 54
>PRK10836 lysine transporter; Provisional
Probab=96.83 E-value=1.1 Score=49.44 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=22.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHh
Q 008955 320 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYV 356 (547)
Q Consensus 320 ~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~v 356 (547)
..+++.-++++..++.+.++.+.+++..+..++..+.
T Consensus 286 ~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~ 322 (489)
T PRK10836 286 LVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRM 322 (489)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544455666777777777777766666665433
No 55
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.78 E-value=2 Score=51.65 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHhh
Q 008955 330 SSKLFAIALLASGQSSTITGTYAGQYVM 357 (547)
Q Consensus 330 a~~iFaigLlaAg~sStit~t~ag~~vm 357 (547)
...+..+|.+.+.++|..+..++...++
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl 413 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLF 413 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999988887777654444
No 56
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=96.68 E-value=1.3 Score=48.25 Aligned_cols=264 Identities=17% Similarity=0.147 Sum_probs=135.0
Q ss_pred HhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhC------CC---------chH
Q 008955 58 IAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEY------PK---------VPN 122 (547)
Q Consensus 58 ~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y------~~---------~~~ 122 (547)
++-+|.||++.-..|=+.-|-.-+..+.+..+++..-+..=.- |++.+|++= |. ..+
T Consensus 74 a~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~--------La~~Yr~kd~~G~~~GGP~yYi~kGl~~r 145 (452)
T COG1115 74 AARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAEST--------LAQKYRVKDKDGEYRGGPAYYIEKGLGMR 145 (452)
T ss_pred HhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHH--------HHhheeEeCCCCCCcCChHHHHHhhcCCc
Confidence 4579999998888887777777666666666666655544333 444444321 11 123
Q ss_pred HHHHHHHH--HHHHH--HhhhhHHHHHHHHHHhcCCchHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 008955 123 FILWVLAE--IAIVA--CDIPEVIGTAFALNMLFKIPVWIG-VLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFF 197 (547)
Q Consensus 123 ~~lwi~~~--la~i~--~di~eviG~Aial~lLfgipl~~g-vlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~ 197 (547)
|.-.+.+. +...+ ...-+.=-.+-+++--|++|.|.. +.++.+ +... .+ .|.|++-++...+|=.|++.|+
T Consensus 146 ~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi~la~l-~~~V-I~--GGi~rIa~v~~~vVPfMA~~Yi 221 (452)
T COG1115 146 WLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGIPPLVTGIVLALL-VALV-IF--GGIKRIAKVSSKVVPFMAILYV 221 (452)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHH-HHHH-HH--cchHHHHHHHHHHHHHHHHHHH
Confidence 33333331 11111 112222234556667789986654 444333 2222 22 2689999999999999999998
Q ss_pred HHHhhc--------CCCHHHhhccccccccCCCChHHHHHHHhcccchhHHHHHHHHHHhhhcCCCcchhh---------
Q 008955 198 AELGYA--------KPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSI--------- 260 (547)
Q Consensus 198 ~~~~~~--------~Pd~~~v~~G~~iP~~~~~~~l~~avaiiGatimP~nlflhS~lv~~R~~~~~~~~~--------- 260 (547)
...+.. .|-...+.+.-|-|+ ..+=|.+|++++--. +.+. +|+.-.+|.+.
T Consensus 222 ~~~~~Ii~~n~~~iP~~i~~If~sAF~~~-------aa~GG~~G~~v~~aI---~~Gv--~RGlfSNEAGmGsap~aaAa 289 (452)
T COG1115 222 LVALVIIVLNISQIPAVIALIFSSAFGPK-------AAAGGFAGYTVAQAI---RNGV--KRGLFSNEAGMGSAPIAAAA 289 (452)
T ss_pred HHHHHHHHhhHhhhHHHHHHHHHhcCCch-------hhhhhhhhHHHHHHH---HHHH--HHHhhcccccCCcchhHHHh
Confidence 766432 122223344433332 123445555544221 1111 23321111000
Q ss_pred ---hhhhHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchHHHHHHHHHhhhHHHHHHH
Q 008955 261 ---KSICKEACR---FYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLF 334 (547)
Q Consensus 261 ---~~~~~~~~~---~~~id~~~~l~vs~lIn~~vviv~A~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~lG~~a~~iF 334 (547)
++.+|+..= -..+|+. +-+-++.+++++++.-- ..+.. +...+.| .+++..+|+|+.++-
T Consensus 290 A~~~hPv~QGlv~~~gvfiDT~----iVCt~Ta~iIL~sg~~~-----~~~~~---~G~~ltq--~A~~~~~g~~G~~fv 355 (452)
T COG1115 290 AKTDHPVKQGLVQMLGVFIDTL----VVCTATAFIILLSGAWN-----SGGGL---SGAALTQ--AAFSSHLGSWGSYFV 355 (452)
T ss_pred hcCCCcHHHhHHHHhhhhhhhh----HHhhHHHHHHHHcCCcc-----cCCCC---chHHHHH--HHHHHhcCccHHHHH
Confidence 000122110 0122222 11122222333332110 01100 1123444 368999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhHhhhc
Q 008955 335 AIALLASGQSSTITGTYAGQYVMQG 359 (547)
Q Consensus 335 aigLlaAg~sStit~t~ag~~vm~g 359 (547)
+++++.-++||.+..-|-++..+|=
T Consensus 356 ~i~l~lFafTTIlg~yyyge~~~~f 380 (452)
T COG1115 356 AIALFLFAFTTILGWYYYGEKNIEF 380 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887777666543
No 57
>PRK10580 proY putative proline-specific permease; Provisional
Probab=96.67 E-value=1.4 Score=48.24 Aligned_cols=75 Identities=7% Similarity=0.190 Sum_probs=40.5
Q ss_pred chHHHHHHhhhHHHHHHHh-hcCCchHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHHhhhhhhcCCCHHHHHHh
Q 008955 41 TSWKNLFAYIGPGFLVSIA-YIDPGNFETDLQSGAQYKYELLWIILVA----SCAALIIQSLAANLGVVTGKHLAEHCRN 115 (547)
Q Consensus 41 ~~~~~~~~~lGPG~Lva~a-~idpGni~t~~qaGA~~Gy~LLWvllla----~i~~~~~Q~laaRlgvvTG~~Lae~~r~ 115 (547)
-+.++.. .++=|-++..+ +..||.... .+|. ..+|..+++ ...++.+.|++.|+-.. -+..+-.++
T Consensus 11 L~~~~~~-~i~vg~~IG~Gif~~~g~~~~--~aG~----~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~--Gg~y~y~~~ 81 (457)
T PRK10580 11 LSTRHIR-FMALGSAIGTGLFYGSADAIK--MAGP----SVLLAYIIGGVAAYIIMRALGEMSVHNPAA--SSFSRYAQE 81 (457)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHHHHH--HhCh----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHH
Confidence 3444433 24444444332 566665444 2343 233443433 44456677888776542 255567788
Q ss_pred hCCCchHHH
Q 008955 116 EYPKVPNFI 124 (547)
Q Consensus 116 ~y~~~~~~~ 124 (547)
.+||.+.+.
T Consensus 82 ~~G~~~gf~ 90 (457)
T PRK10580 82 NLGPLAGYI 90 (457)
T ss_pred HcCcHHHHH
Confidence 899877654
No 58
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=96.63 E-value=1.6 Score=48.40 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 008955 86 VASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (547)
Q Consensus 86 la~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~ 124 (547)
++...++.+-|++.++=. +| +.-.-.++.||+.+.+.
T Consensus 89 ~~~~~al~~aELas~~P~-sG-G~y~~~~~~~g~~~gf~ 125 (501)
T TIGR00911 89 FSIVGALVYAELGTTIPK-SG-GEYNYILEVFGPLLAFL 125 (501)
T ss_pred HHHHHHHHHHHHHhhcCC-CC-chhhhHHhHhCCHHHHH
Confidence 334556677777777653 33 45666778899887664
No 59
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=96.49 E-value=1.6 Score=46.83 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=27.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHh
Q 008955 318 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYV 356 (547)
Q Consensus 318 a~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~v 356 (547)
.....+...|++...++.+++..+.+++..+...+..+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 298 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRL 298 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhc
Confidence 344555555688888898998888888877766655333
No 60
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.42 E-value=1.9 Score=46.89 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 008955 85 LVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (547)
Q Consensus 85 lla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~ 124 (547)
+.+.+.++.+.|++.|+=. +| +..+-.|| +|+.+.+.
T Consensus 48 ~~~l~~al~~aEL~s~~P~-~G-G~y~y~~~-~g~~~gf~ 84 (435)
T PRK10435 48 IGAMSLAYVYARLATKNPQ-QG-GPIAYAGE-ISPAFGFQ 84 (435)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHH-HCcHHHHH
Confidence 4456777888999998875 45 56666676 77766554
No 61
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=96.40 E-value=2 Score=46.97 Aligned_cols=35 Identities=9% Similarity=0.122 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 008955 88 SCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (547)
Q Consensus 88 ~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~ 124 (547)
.+.++.+-|++.++=. +| +..+-.||.+|+.+.+.
T Consensus 39 ~~~al~~aEL~s~~P~-~G-g~y~y~~~~~G~~~gf~ 73 (446)
T PRK10197 39 VMIMRMLAEMAVATPD-TG-SFSTYADKAIGRWAGYT 73 (446)
T ss_pred HHHHHHHHHHHHhCCC-CC-CHHHHHHHHcChHHHHH
Confidence 3445666677776654 33 67888899999877654
No 62
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.31 E-value=2.3 Score=46.77 Aligned_cols=77 Identities=17% Similarity=0.344 Sum_probs=54.7
Q ss_pred HhhhhhhcCCCHHHHHHhhCC-CchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 98 AANLGVVTGKHLAEHCRNEYP-KVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 98 aaRlgvvTG~~Lae~~r~~y~-~~~~~~lwi~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
+-|+==.-+-+.+|.+.+||. ++.|++.-+...+.....-++++.|++.-+..++|+|-++++.+..+...+...++
T Consensus 95 A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~G 172 (529)
T COG4147 95 AEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLG 172 (529)
T ss_pred HHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCceeehhhHhHHHHHHHHhc
Confidence 334444445567899888876 45666655555566667778999999999999999999999887766544444443
No 63
>PRK10746 putative transport protein YifK; Provisional
Probab=96.27 E-value=2.4 Score=46.58 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 008955 88 SCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (547)
Q Consensus 88 ~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~ 124 (547)
......+-|++.++=. +| +..+-.++.+|+.+.+.
T Consensus 57 ~~v~~~~aEl~~~~P~-sG-g~~~y~~~~~g~~~Gf~ 91 (461)
T PRK10746 57 FFIMRSMGEMLFLEPV-TG-SFAVYAHRYMSPFFGYL 91 (461)
T ss_pred HHHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHH
Confidence 3344456777777643 44 56778888888866544
No 64
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=96.01 E-value=3.2 Score=45.58 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=56.2
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHH
Q 008955 52 PGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEI 131 (547)
Q Consensus 52 PG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~l 131 (547)
=|+..=+-+.|+||+.-=..-|.+.|-+..+..+--.+-+..+=-++.=--..+|.+..+.-++ -||+....+....-+
T Consensus 13 iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~l~~r-v~~~f~~~f~~~i~l 91 (439)
T PRK15433 13 LGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTP-IGKVAGVLLATVCYL 91 (439)
T ss_pred HHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhhh-cchHHHHHHHHHHHH
Confidence 3777778899999999998888888888888777666666655555444444455566666655 577777776555544
Q ss_pred HH
Q 008955 132 AI 133 (547)
Q Consensus 132 a~ 133 (547)
++
T Consensus 92 ~I 93 (439)
T PRK15433 92 AV 93 (439)
T ss_pred HH
Confidence 43
No 65
>PRK10655 potE putrescine transporter; Provisional
Probab=95.50 E-value=4.6 Score=43.74 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=22.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 008955 318 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAG 353 (547)
Q Consensus 318 a~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag 353 (547)
.++.++..+|++...+..++.+.+.+++..+..+++
T Consensus 260 ~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~ 295 (438)
T PRK10655 260 FGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTI 295 (438)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788887666666665555565555444443
No 66
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.28 E-value=6.5 Score=44.07 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=72.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc------CCCHHHhhcccccccc-C-----CCChHHHHHHHhcc--cc
Q 008955 171 LALQQYGVRKLEFLIAFLVFTMAGCFFAELGYA------KPEAKEVLHGLFVPQL-K-----GNGATGLAISLLGA--MV 236 (547)
Q Consensus 171 L~l~~yg~r~lE~~~~~Lv~vm~l~F~~~~~~~------~Pd~~~v~~G~~iP~~-~-----~~~~l~~avaiiGa--ti 236 (547)
.++..+.-|.++++.++-+....+.++...+.. |+.+.+ |-++..- . ......+.++..+. ++
T Consensus 189 ~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns---~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~ 265 (550)
T KOG1289|consen 189 GLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNS---GSFIFGKFNNYSGWKNNGWAFILGFFNPAWTM 265 (550)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC---CceeeecccccCCCCcchHHHHHhhccceeEE
Confidence 344555568888888877777666666555432 211111 2222211 1 11245667777654 34
Q ss_pred hhHHHHHHHHHHhhhcCCCcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcccccccchH
Q 008955 237 MPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLN 316 (547)
Q Consensus 237 mP~nlflhS~lv~~R~~~~~~~~~~~~~~~~~~~~~id~~~~l~vs~lIn~~vviv~A~vl~~~g~~~~~~~~~~~~~l~ 316 (547)
..|.---|-+- |- .+.+ |.+=|-..--..++.++++.+++.+ +..+.. ..+. ...+..-+
T Consensus 266 sGyDa~~H~aE--E~--~nAs-------k~aPrgIi~s~~i~~i~gw~~~I~i----~~~i~~-D~~~----v~ns~~g~ 325 (550)
T KOG1289|consen 266 SGYDAAAHMAE--ET--KNAS-------KAAPRGIISSIAIGFILGWIIIIGI----AYTIPD-DLDA----VLNSSLGQ 325 (550)
T ss_pred eccCchHHHHH--Hh--cchh-------hhccHHHHHHHHHHHHHHHHHHHHH----HHhccc-hHHH----HhcCCCCC
Confidence 44444445221 11 1111 1221222233444445555544443 333321 0000 00000113
Q ss_pred HHHHHHHHhhhHHHH----HHHHHHHHHhhhhhhhhhh
Q 008955 317 KASFLLRNVLGSWSS----KLFAIALLASGQSSTITGT 350 (547)
Q Consensus 317 ~a~~~L~~~lG~~a~----~iFaigLlaAg~sStit~t 350 (547)
...+.+.+.+|+-+. -+-.++++..|++|.++.+
T Consensus 326 p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~S 363 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASS 363 (550)
T ss_pred hHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHH
Confidence 456778888887543 3555666777777776553
No 67
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=95.19 E-value=6.2 Score=43.37 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=35.3
Q ss_pred HHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHH-----HHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 008955 55 LVSIAYIDPGNFETDLQSGAQYKYELLWIILVAS-----CAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (547)
Q Consensus 55 Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~-----i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~ 124 (547)
+..++-++-.|+.+ .|.+|.+.+...+++. +.++.+-|++.++=. +| +..+-.||.+|+.+.+.
T Consensus 11 ~~~~~v~~~~~~~~----~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G-G~y~~~~~a~G~~~gf~ 79 (474)
T TIGR03813 11 MNITAVVSLRGLPA----EAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KG-GVFRWVGEAFGARWGFL 79 (474)
T ss_pred HHHHHHHHhhcchH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC-CceeeHhhhcChhHHHH
Confidence 33344444445533 3456665543333332 345566777776643 22 56677888899876654
No 68
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=94.77 E-value=0.29 Score=53.76 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=27.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHh
Q 008955 320 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYV 356 (547)
Q Consensus 320 ~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~v 356 (547)
...+..-+++...++.++.+.+.+++...+.++..+.
T Consensus 278 ~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~ 314 (478)
T PF00324_consen 278 IAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRL 314 (478)
T ss_pred hhhhhcccccccceecccchhhhhhhhhhhhccccee
Confidence 3455556678888999999999999888877765433
No 69
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=94.44 E-value=9.6 Score=41.93 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 008955 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (547)
Q Consensus 79 ~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~ 124 (547)
..+...+.....++.+-|++.|+=. +| +.-.-.++-+|+.+.+.
T Consensus 52 ~~li~~i~~l~~als~aEL~s~~P~-aG-G~Y~~~~~~~g~~~gf~ 95 (475)
T TIGR03428 52 TWPVVFVGQLLVALNFAELAARYPI-SG-AIYQWSRRMGGEVIGWF 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC-CC-CHHHHHHHHcCccccHH
Confidence 3444444555667778888888764 33 45566677788876554
No 70
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=94.02 E-value=10 Score=40.73 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=68.7
Q ss_pred HHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHH----------HHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCc-hHH
Q 008955 55 LVSIAYIDPGNFETDLQSGAQYKYELLWIILVAS----------CAALIIQSLAANLGVVTGKHLAEHCRNEYPKV-PNF 123 (547)
Q Consensus 55 Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~----------i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~-~~~ 123 (547)
..++.|++.++.... -|+.|.|.|-|+++-.. +++=-+-+.+=|++.+ ++-|..|+||-.. ..|
T Consensus 49 t~~aTYisaSSFigG--pgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAl---tI~D~l~~RY~s~fl~~ 123 (473)
T COG4145 49 TFTATYISASSFIGG--PGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNAL---TINDLLFARYQSRFLVW 123 (473)
T ss_pred HHHHHHHHHhhhcCC--CcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCe---eHHHHHHHHhcchHHHH
Confidence 344555555544443 36778888889554321 1111223333344433 4777788887543 333
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhh
Q 008955 124 ILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQY 176 (547)
Q Consensus 124 ~lwi~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~y 176 (547)
..-+.....-+.....+++|.|=-++...|+|-..|.++++....+.-+++.+
T Consensus 124 las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~ifa~~V~iYt~fGGF 176 (473)
T COG4145 124 LASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGGF 176 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHHHHHHHHHHhhcce
Confidence 32223333334455678899988888778999999999988776666666643
No 71
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=93.89 E-value=2.7 Score=44.97 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=45.2
Q ss_pred CCchHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHhhhhhh--cCCCHHHHHHhhCCCchHHHH
Q 008955 62 DPGNFETDLQSGAQYKYE--LLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNFIL 125 (547)
Q Consensus 62 dpGni~t~~qaGA~~Gy~--LLWvllla~i~~~~~Q~laaRlgvv--TG~~Lae~~r~~y~~~~~~~l 125 (547)
|.|-+..-..+ +.|||- +||+++ ++++.-.+|.+.+=...+ -||++.|.++|+.||..+.++
T Consensus 67 GaGPI~GPi~a-a~~GwlPa~lWI~~-G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf 132 (376)
T PF02554_consen 67 GAGPIVGPILA-AQFGWLPALLWIVF-GCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLF 132 (376)
T ss_pred ccccchHHHHH-HHhcchHHHHHHHH-ccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 33445555555 999996 888765 555555667776666555 699999999999999877664
No 72
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=93.73 E-value=15 Score=41.42 Aligned_cols=54 Identities=22% Similarity=0.360 Sum_probs=39.9
Q ss_pred HHHHhhhh--HHHHHHHHHHHHHHHHHHHHhhhhhh--cCCCHHHHHHhhCCCchHHHH
Q 008955 71 QSGAQYKY--ELLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNFIL 125 (547)
Q Consensus 71 qaGA~~Gy--~LLWvllla~i~~~~~Q~laaRlgvv--TG~~Lae~~r~~y~~~~~~~l 125 (547)
..+|+||| .+||+++ +++++-.+|.+..=.-.+ -||++.|..+|+.|+..+.+.
T Consensus 75 vlAAq~G~Lp~~LWIl~-G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~~ 132 (575)
T COG1966 75 ALAAQYGWLPAFLWILL-GCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVFF 132 (575)
T ss_pred HHHHHhcCcHHHHHHHH-hhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHHH
Confidence 46789996 7899754 566666667665443333 599999999999999887653
No 73
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=93.67 E-value=3.4 Score=46.26 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhh-hHhhhcc
Q 008955 327 GSWSSKLFAIALLASGQSSTITGTYAG-QYVMQGF 360 (547)
Q Consensus 327 G~~a~~iFaigLlaAg~sStit~t~ag-~~vm~gf 360 (547)
|+.-..+|=+.++.+|.+|.++..-.- ..++|.+
T Consensus 344 ~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~ 378 (523)
T PF00209_consen 344 GRFWAILFFLMLFLAGLTSQISMLEVIVSALMDEF 378 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CcChHHHHHHHHHHHHhhhcCCceeceeEeeeecC
Confidence 455566777788888888877544332 3344443
No 74
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=93.61 E-value=14 Score=40.76 Aligned_cols=123 Identities=20% Similarity=0.261 Sum_probs=72.0
Q ss_pred cCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh--cCCCHHHHHHhhCCCchHH----HHHHHHHHHHH
Q 008955 61 IDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVV--TGKHLAEHCRNEYPKVPNF----ILWVLAEIAIV 134 (547)
Q Consensus 61 idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvv--TG~~Lae~~r~~y~~~~~~----~lwi~~~la~i 134 (547)
+|.|=...+.++=+..|-+.+-+-+++-++.+++.+.-+-+-+. +-.+..+-++|.+|++..+ ..|+.-.+
T Consensus 29 IGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~--- 105 (462)
T COG1113 29 IGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFWVL--- 105 (462)
T ss_pred hhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHHHHH---
Confidence 33333333334444556666666666666777777777766666 3458999999999987643 34443322
Q ss_pred HHhhhhHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 008955 135 ACDIPEVIGTAFALNMLF-KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAF 187 (547)
Q Consensus 135 ~~di~eviG~Aial~lLf-gipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~ 187 (547)
..++|+.+.++=++.-| ++|.|+.+++..+....+=...-..+..+|.-+..
T Consensus 106 -v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 106 -VGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred -HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456655555555556 68999998776554332222222235677765433
No 75
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=92.67 E-value=21 Score=40.35 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=26.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHh
Q 008955 320 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYV 356 (547)
Q Consensus 320 ~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~v 356 (547)
.+++..-++++..+..+|.+.+..++..+..++..++
T Consensus 303 ~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRi 339 (557)
T TIGR00906 303 VAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRV 339 (557)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455444478888999999988888888777765433
No 76
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=92.67 E-value=20 Score=39.97 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=79.3
Q ss_pred CCchHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchH-HHHHHHHHHHHHH
Q 008955 62 DPGNFETDLQSGAQYKY-----ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPN-FILWVLAEIAIVA 135 (547)
Q Consensus 62 dpGni~t~~qaGA~~Gy-----~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~-~~lwi~~~la~i~ 135 (547)
|.=|+-+..-++.-+.. +-+=.++++.++-++...+.+|-|..+|-+-...+|.-||-+-+ +...+=+.+|++=
T Consensus 53 ~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~W 132 (497)
T COG1953 53 MVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGANFPALIRAIVAIVW 132 (497)
T ss_pred hhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 33444444444444433 33445667777888888999999999999999999999985432 2222223344443
Q ss_pred HhhhhHHHHHHHHHHhc----C-------------Cch--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 008955 136 CDIPEVIGTAFALNMLF----K-------------IPV--WIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCF 196 (547)
Q Consensus 136 ~di~eviG~Aial~lLf----g-------------ipl--~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F 196 (547)
.-+|..+|. .+++++. + ++. +++-++.=+....+++.+-+..||+|..-..++-++.+.+
T Consensus 133 yGvqty~Gg-~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl 211 (497)
T COG1953 133 YGVQTYAGG-LAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGL 211 (497)
T ss_pred HHHHHHHhH-HHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHH
Confidence 344554443 3333332 1 111 2222222223344444455568999998888877776666
Q ss_pred HHHH
Q 008955 197 FAEL 200 (547)
Q Consensus 197 ~~~~ 200 (547)
++=+
T Consensus 212 ~Iw~ 215 (497)
T COG1953 212 AIWA 215 (497)
T ss_pred HHHH
Confidence 5433
No 77
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=92.26 E-value=17 Score=38.21 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHH-HH-----HHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHH
Q 008955 87 ASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFIL-WV-----LAEIAIVACDIPEVIGTAFALNMLFKIPVWIGV 160 (547)
Q Consensus 87 a~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~l-wi-----~~~la~i~~di~eviG~Aial~lLfgipl~~gv 160 (547)
+.+..+.+-+++.|. -|+++.|..++.+||+.++.+ |. ....+....+.+|++- ..++..-|.|...
T Consensus 47 ~~~~~~~~~~l~~~~---p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~tp~~~~~ 119 (359)
T TIGR00912 47 IIFLLCLMIKIMSKF---PEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIK----TYLLPRTPIIVII 119 (359)
T ss_pred HHHHHHHHHHHHHHC---CCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCHHHHH
Confidence 334444555555554 478999999999999877653 11 1122222333333321 1122346766654
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008955 161 LLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGC 195 (547)
Q Consensus 161 lit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~ 195 (547)
++..+ +..+..+.|.|...|+..++..++.+.
T Consensus 120 l~~l~---~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 120 ILIII---VSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHH---HHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 44332 223344457888888777666655555
No 78
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=90.91 E-value=28 Score=38.04 Aligned_cols=78 Identities=12% Similarity=0.024 Sum_probs=55.3
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHH
Q 008955 52 PGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAE 130 (547)
Q Consensus 52 PG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~ 130 (547)
=|++.=+-+.|+||+.-=-..|.+.|....|..+--.+-+.-+=-+..=-....|++..+.-++ -||+....+-...-
T Consensus 10 ~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~~~~~l~~~-i~~~fg~~f~~~iy 87 (431)
T COG1114 10 LGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGGGVESLATR-IGPWFGVLFAIAIY 87 (431)
T ss_pred HHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCCCHHHHhhh-ccchHHHHHHHHHH
Confidence 3667777899999999999999999998877776555555555445444455578887777765 57777666544333
No 79
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=87.62 E-value=55 Score=36.97 Aligned_cols=140 Identities=16% Similarity=0.220 Sum_probs=72.6
Q ss_pred hhHHHHHHHhhcCCchHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCC--CHHHHHHh-hCCCchHHHH
Q 008955 50 IGPGFLVSIAYIDPGNFETDL-QSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGK--HLAEHCRN-EYPKVPNFIL 125 (547)
Q Consensus 50 lGPG~Lva~a~idpGni~t~~-qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~--~Lae~~r~-~y~~~~~~~l 125 (547)
+|.|+.++.+. -.+.. -+|+--+|.+.-.++..+. .-+=||+..+= ++|- +.+..+-+ -+|=-..|..
T Consensus 60 IGTGLfvgsG~-----~l~~aGP~g~li~y~i~G~~vy~vm--~sLGEma~~~P-~sGsF~~ya~rfvdpa~GFa~gWnY 131 (541)
T COG0833 60 IGTGLFVGSGK-----ALSQAGPAGLLIAYLIIGIMVYFVM--QSLGELAVFYP-VSGSFSTYATRFVDPAFGFALGWNY 131 (541)
T ss_pred cccceeeecch-----hhhccCcHHHHHHHHHHHHHHHHHH--HHHHHHHhhcC-CCCchhhhhhhhcCchHHHHHHHHH
Confidence 77888765442 22222 3566667766655555433 34558888888 6773 22222211 1111123333
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 008955 126 WVLAEIAIVACDIPEVIGTAFALNMLF--KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELG 201 (547)
Q Consensus 126 wi~~~la~i~~di~eviG~Aial~lLf--gipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~~~~ 201 (547)
|+--. ..+ -.|+..+++-++.-+ .+|.|+++.+..+..+++=.++-.+|--.|..+..+=.++.+.|++..+
T Consensus 132 w~~w~-v~~---~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gi 205 (541)
T COG0833 132 WLNWA-VTL---PLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGI 205 (541)
T ss_pred HHHHH-HHh---hHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHH
Confidence 33221 112 236655666666555 3588888877665444444444445667777655554445555555443
No 80
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=85.88 E-value=62 Score=35.85 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=37.0
Q ss_pred HHHHhhcCCchHHHHHH-HHHhhhhHHHHHHHHHH----HHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHH
Q 008955 55 LVSIAYIDPGNFETDLQ-SGAQYKYELLWIILVAS----CAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFI 124 (547)
Q Consensus 55 Lva~a~idpGni~t~~q-aGA~~Gy~LLWvllla~----i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~ 124 (547)
+...+-++-+++..+.+ .|. ...+|.++.+. +.++.+-|++.++=-.+| +.-.-.|+-+|+.+++.
T Consensus 17 ~~~~~vig~~~~~~~~~~~G~---~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~gf~ 87 (496)
T PRK15238 17 MIFTSVFGFANSPRAFYLMGY---SAIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKFAFI 87 (496)
T ss_pred HHHHHHHhCCchHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchHHHH
Confidence 33344455566654333 332 24455554443 344566777776543233 67778888899888764
No 81
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=84.64 E-value=79 Score=36.00 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=25.7
Q ss_pred HHHHH---HHHHHHHHhhhhhhhhhhhhhhHhh
Q 008955 328 SWSSK---LFAIALLASGQSSTITGTYAGQYVM 357 (547)
Q Consensus 328 ~~a~~---iFaigLlaAg~sStit~t~ag~~vm 357 (547)
.++++ ++.++++.+..|+...+.|++.+.+
T Consensus 315 ~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l 347 (554)
T KOG1286|consen 315 AGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVL 347 (554)
T ss_pred cCccccchhhhHHHHHHHHHHHHHHhHHhHHHH
Confidence 35778 9999999999999999999986665
No 82
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=82.55 E-value=75 Score=34.15 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=25.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 008955 318 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAG 353 (547)
Q Consensus 318 a~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag 353 (547)
.........|.+...+..++.+.+.+++..+...+.
T Consensus 274 ~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~ 309 (466)
T COG0531 274 LALAALFGGGNWGAIIIAILALLSLFGSLLAWILAV 309 (466)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666678888888888888888877665554
No 83
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=77.59 E-value=1.3e+02 Score=33.98 Aligned_cols=47 Identities=26% Similarity=0.420 Sum_probs=25.9
Q ss_pred HHHHHHhcCCch--HHHHHHHHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHH
Q 008955 145 AFALNMLFKIPV--WIGVLLTGFSTLILL-----ALQQYGVRKLEFLIAFLVFTM 192 (547)
Q Consensus 145 Aial~lLfgipl--~~gvlit~~~~~~lL-----~l~~yg~r~lE~~~~~Lv~vm 192 (547)
..+++.++|+|- +.-+.+.++.+.++. .++ .|.|++-++...+..++
T Consensus 216 ~~Gl~~l~gip~~~~~q~~iI~vi~~~~~~S~~sGv~-KGIr~LS~~n~~la~~l 269 (537)
T COG1292 216 TAGLSYLFGIPNSFAVQAIIIAVITALFTISVWSGLD-KGIRVLSNINMVLAFLL 269 (537)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHH
Confidence 447888999982 332333333332222 223 37888888776654443
No 84
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=76.76 E-value=1.1e+02 Score=32.55 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=11.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHhc
Q 008955 370 RNFLTRC-LAIVPSLIVALIGG 390 (547)
Q Consensus 370 r~l~tr~-iaivpallv~~~~g 390 (547)
|+.+.+. ..++|.+.+..+..
T Consensus 126 r~~l~~~~~~~~pl~~~~~~~~ 147 (340)
T PF12794_consen 126 RRQLRWLIWVLVPLLFISIFAE 147 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444443 44567777666654
No 85
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=76.76 E-value=97 Score=32.04 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh-cCCCHHHHHHhhCCCchHHHHH------HHHHHHHHHHhhhhHHHHHHHHHHhcCC
Q 008955 82 WIILVASCAALIIQSLAANLGVV-TGKHLAEHCRNEYPKVPNFILW------VLAEIAIVACDIPEVIGTAFALNMLFKI 154 (547)
Q Consensus 82 Wvllla~i~~~~~Q~laaRlgvv-TG~~Lae~~r~~y~~~~~~~lw------i~~~la~i~~di~eviG~Aial~lLfgi 154 (547)
...+++.+.++++-.+..|+.-- .|+++.|..++.+||+.+..+- .....+....+..|++.+ .++-.-
T Consensus 36 i~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~----~~lp~T 111 (320)
T PF03845_consen 36 ISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKT----YLLPET 111 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCcC
Confidence 34566666666776777777765 8999999999999999876532 222233333334444332 233357
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcC--CCHHHhhccccccccCC
Q 008955 155 PVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAK--PEAKEVLHGLFVPQLKG 221 (547)
Q Consensus 155 pl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~Lv~vm~l~F~~~~~~~~--Pd~~~v~~G~~iP~~~~ 221 (547)
|.|.-.++..+. ..+.-++|.+.+=|....+...+.+.++......- -|+.. +.|-.+.
T Consensus 112 P~~~i~~~~ll~---~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~-----l~P~~~~ 172 (320)
T PF03845_consen 112 PIWVIILLFLLV---AAYAARKGIEVIARVAEILFPIFLILLLLILLLSIPNIDWDN-----LLPVLES 172 (320)
T ss_pred CHHHHHHHHHHH---HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH-----eeCcccC
Confidence 877666554432 23444556666666544444444444444444433 34444 4565543
No 86
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=74.09 E-value=68 Score=34.14 Aligned_cols=86 Identities=16% Similarity=0.270 Sum_probs=56.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhc-ccchHHHH
Q 008955 320 FLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGG-SAGAGQLI 398 (547)
Q Consensus 320 ~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpallv~~~~g-~~~~~~Ll 398 (547)
+.++.++|++...++=+.++-..++++++..-++....|+.+|+ +.|.-.++. +-.+.++.+.+ .++...
T Consensus 70 ~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--P~wiGali~-----i~~v~i~lfl~~vegi~t-- 140 (349)
T COG3949 70 EILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--PYWIGALII-----ILLVLILLFLGRVEGIIT-- 140 (349)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--cHHHHHHHH-----HHHHHHHHHHhcccceee--
Confidence 46888999999999999999999999887766666677777764 456643332 22222333333 333221
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 008955 399 IIASMILSFELPFALVPLLKF 419 (547)
Q Consensus 399 ~~aqvi~s~~LPfalipll~~ 419 (547)
++++..|+..+.++..
T Consensus 141 -----vn~iI~P~LIi~l~~v 156 (349)
T COG3949 141 -----VNGIITPFLIIILVLV 156 (349)
T ss_pred -----eheeHHHHHHHHHHHH
Confidence 5678889988876553
No 87
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=61.67 E-value=3e+02 Score=31.65 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=63.7
Q ss_pred HhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHH
Q 008955 58 IAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQS----LAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAI 133 (547)
Q Consensus 58 ~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~----laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~la~ 133 (547)
+++++.+++..-...|++||.+-.|.-+-+.......-. .--|.++. +.-|-.+.||++..+.. +.+..+-.
T Consensus 58 aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~---~~~eYl~~Rf~~~~r~l-~~l~f~l~ 133 (585)
T KOG2349|consen 58 ASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVT---TMYEYLEKRFGGRVRYL-ATLSFILM 133 (585)
T ss_pred hhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCee---ehhHHHHHHhcccchhh-HHHHHHHH
Confidence 566777777777888999999887766555444333221 22344443 35677888888875553 33332222
Q ss_pred HHHhhhhHH-HHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 008955 134 VACDIPEVI-GTAFALNMLFKIPVWIGVLLTGFSTLIL 170 (547)
Q Consensus 134 i~~di~evi-G~Aial~lLfgipl~~gvlit~~~~~~l 170 (547)
+..-+..++ --|+++|..+|+..+..+++....|...
T Consensus 134 ~~~~l~v~~y~pal~~~qvtg~~~~l~~~~~~~ic~~Y 171 (585)
T KOG2349|consen 134 IFLYLPVDMYAPALAINQVTGINLYLIVVILGLICVFY 171 (585)
T ss_pred HHhheeeeEeehHHHHHHHhccCceeehHHHHHHHHHH
Confidence 222233221 2367788788888776666555544433
No 88
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=61.44 E-value=2.6e+02 Score=30.90 Aligned_cols=132 Identities=13% Similarity=0.089 Sum_probs=63.7
Q ss_pred CCHHHHHHhhCCCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhc-----CC-ch--HHHHHHHHHHHHHHHHHHhhhh
Q 008955 107 KHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLF-----KI-PV--WIGVLLTGFSTLILLALQQYGV 178 (547)
Q Consensus 107 ~~Lae~~r~~y~~~~~~~lwi~~~la~i~~di~eviG~Aial~lLf-----gi-pl--~~gvlit~~~~~~lL~l~~yg~ 178 (547)
++-.|+.++-||++.+++.+....+-..+..+.-++=.+.-++-++ +. +. .....++++.++.+.++.+..
T Consensus 105 ~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~- 183 (437)
T KOG1303|consen 105 YRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFH- 183 (437)
T ss_pred CChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcc-
Confidence 4578888888987666555444444444443333332333333332 22 22 234455555566666665542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC--CHH--HhhccccccccCCCChHHHHHHHhcccchhHHHHH
Q 008955 179 RKLEFLIAFLVFTMAGCFFAELGYAKP--EAK--EVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFL 243 (547)
Q Consensus 179 r~lE~~~~~Lv~vm~l~F~~~~~~~~P--d~~--~v~~G~~iP~~~~~~~l~~avaiiGatimP~nlfl 243 (547)
.+ ........+|..++...++.+.. +.+ +..++ .|.....+....++|++.-.-..|+.+.
T Consensus 184 -~l-~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~--~~~~~~~~~~f~a~g~iaFaf~gH~v~p 248 (437)
T KOG1303|consen 184 -SL-SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGG--YLDLGTIPTVFTALGIIAFAYGGHAVLP 248 (437)
T ss_pred -hh-HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccC--cccCCCCcchhhhhhheeeeecCCeeee
Confidence 11 22233344455444444443321 111 11122 1221111112578999988888888874
No 89
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=49.50 E-value=3.1e+02 Score=28.21 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 008955 175 QYGVRKLEFLIAFLVFTMA 193 (547)
Q Consensus 175 ~yg~r~lE~~~~~Lv~vm~ 193 (547)
.||+.|+|.+..++.+++.
T Consensus 72 pyG~~r~E~l~~l~~~~~l 90 (299)
T PRK09509 72 TFGHGKAESLAALAQSMFI 90 (299)
T ss_pred CCccHHHHHHHHHHHHHHH
Confidence 3789999999877666544
No 90
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=47.65 E-value=4.5e+02 Score=29.48 Aligned_cols=73 Identities=26% Similarity=0.310 Sum_probs=33.5
Q ss_pred HhhhhhhhhhhhhhhHhhhccc---CCCcchhhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHHHHHHHHH
Q 008955 340 ASGQSSTITGTYAGQYVMQGFL---DLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPL 416 (547)
Q Consensus 340 aAg~sStit~t~ag~~vm~gfl---~~~~~~~~r~l~tr~iaivpallv~~~~g~~~~~~Ll~~aqvi~s~~LPfalipl 416 (547)
.......+|..+++.+++...- +.+.+++.|..-...+.+++..++ ..+|.+....+.+ ..-+|+..+.+
T Consensus 400 il~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll-~~ggl~~lq~~~i------i~~lP~~~v~~ 472 (485)
T PF02028_consen 400 ILIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLL-LIGGLDALQSASI------IGGLPFSFVML 472 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHH-HHHSSHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHH------HHHHHHHHHHH
Confidence 3333445555555555543331 444556666544344444444333 3455322222222 24468877766
Q ss_pred HHH
Q 008955 417 LKF 419 (547)
Q Consensus 417 l~~ 419 (547)
+..
T Consensus 473 ~~~ 475 (485)
T PF02028_consen 473 LMC 475 (485)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 91
>PLN03074 auxin influx permease; Provisional
Probab=46.18 E-value=4.6e+02 Score=29.15 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008955 369 LRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKF 419 (547)
Q Consensus 369 ~r~l~tr~iaivpallv~~~~g~~~~~~Ll~~aqvi~s~~LPfalipll~~ 419 (547)
..|+..|...++.+.+++... +..+.++.+...+....+-+.+=+++++
T Consensus 350 ~~r~~~R~~lv~~~~~iA~~I--P~fg~llsLvGs~~~s~l~~i~P~l~~l 398 (473)
T PLN03074 350 CLRALARLPVVVPIWFLAIIF--PFFGPINSAVGALLVSFTVYIIPSLAHM 398 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667877777776666542 3355666665555444444444344443
No 92
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=43.26 E-value=1.3e+02 Score=27.04 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 008955 471 EVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASH 503 (547)
Q Consensus 471 ~~~~~~~~~~~~~~~y~~~~~yl~~~~~~~~~~ 503 (547)
+..++|++ ..+-.+|-..++|.++|..+..++
T Consensus 78 ~llilG~L-~fIPG~Y~~~i~y~a~rg~~Gysf 109 (115)
T PF05915_consen 78 ALLILGIL-CFIPGFYHTRIAYYAWRGYKGYSF 109 (115)
T ss_pred hHHHHHHH-HHhccHHHHHHHHHHHcCCCCCCH
Confidence 33344443 344568999999999998877665
No 93
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=38.22 E-value=3.3e+02 Score=28.40 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=36.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCCChHHHHHHHhcccchhHHH
Q 008955 175 QYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNL 241 (547)
Q Consensus 175 ~yg~r~lE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~G~~iP~~~~~~~l~~avaiiGatimP~nl 241 (547)
.||+.|.|.+..++++++.+...++.+. +-..-++.|+.+....+...+++++..++-+..
T Consensus 74 pyGh~k~E~l~sl~~~~~i~~~g~~i~~------~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~ 134 (304)
T COG0053 74 PYGHGKAETLASLIVSILIFAAGFEILL------EAIKRLISPQPVEPPLLALGVALISIVIKEALY 134 (304)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 4899999999888877665444433332 112222345555444566778888776665443
No 94
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=37.33 E-value=6.1e+02 Score=28.14 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=44.5
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 008955 109 LAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLI 169 (547)
Q Consensus 109 Lae~~r~~y~~~~~~~lwi~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~ 169 (547)
+.+..++.+|++..+++-+...+|+.-+-++.+.+.+-=++-++.++-..++.++.+.++.
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~isY~~~v~i~~l~S~~ 327 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMV 327 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Confidence 4455778899988888888888888888888887777777766677766666655544443
No 95
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=36.74 E-value=4.4e+02 Score=26.23 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHH
Q 008955 176 YGVRKLEFLIAFLVFTM 192 (547)
Q Consensus 176 yg~r~lE~~~~~Lv~vm 192 (547)
||+.|+|.+..+++++.
T Consensus 52 yG~~r~E~l~~l~~~~~ 68 (268)
T TIGR01297 52 FGHGRAEILAALLNGLF 68 (268)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 89999999887776654
No 96
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=30.48 E-value=7.7e+02 Score=27.19 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=51.0
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 008955 109 LAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFK-IPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAF 187 (547)
Q Consensus 109 Lae~~r~~y~~~~~~~lwi~~~la~i~~di~eviG~Aial~lLfg-ipl~~gvlit~~~~~~lL~l~~yg~r~lE~~~~~ 187 (547)
|.+..++.+|+.-.+++-+...+|+.-+.++=+..+|-=++-+++ ++-..++.++.+.++++ .+.| +|+++++
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~i---an~G---l~~Ii~~ 336 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFII---ANLG---LDQIIKI 336 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH---HHhC---HHHHHHH
Confidence 556677778988788887777888887777766666666666665 77677776666544433 3344 4555544
Q ss_pred HHHHHH
Q 008955 188 LVFTMA 193 (547)
Q Consensus 188 Lv~vm~ 193 (547)
.+=++.
T Consensus 337 s~PiL~ 342 (427)
T PF05525_consen 337 SVPILM 342 (427)
T ss_pred HHHHHH
Confidence 443333
No 97
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=25.11 E-value=9.3e+02 Score=26.35 Aligned_cols=51 Identities=14% Similarity=-0.021 Sum_probs=35.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCch
Q 008955 69 DLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVP 121 (547)
Q Consensus 69 ~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~ 121 (547)
-.++|--+|.-++=...+.+...+.++.-+++.+-.. +.++.+++.+|+..
T Consensus 31 fk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 31 FKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFGKLG 81 (411)
T ss_pred HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcCCCc
Confidence 3566666666666666666777777776666665545 88888888888765
No 98
>PRK03557 zinc transporter ZitB; Provisional
Probab=24.43 E-value=8.1e+02 Score=25.43 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 008955 176 YGVRKLEFLIAFLVFTMAG 194 (547)
Q Consensus 176 yg~r~lE~~~~~Lv~vm~l 194 (547)
||+.|+|.+..++.+++.+
T Consensus 81 yG~~r~E~l~al~~~~~l~ 99 (312)
T PRK03557 81 FGWLRLTTLAAFVNAIALV 99 (312)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 7999999988777665443
No 99
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=24.33 E-value=3.6e+02 Score=27.75 Aligned_cols=34 Identities=24% Similarity=0.525 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhh
Q 008955 143 GTAFALNMLFKIPVWIGVLLTGFSTLILLALQQY 176 (547)
Q Consensus 143 G~Aial~lLfgipl~~gvlit~~~~~~lL~l~~y 176 (547)
+++.++...++.|.|..+++..+-.++++.++|+
T Consensus 32 s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ 65 (301)
T PF14362_consen 32 SGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRF 65 (301)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777676666665555555555543
No 100
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=23.79 E-value=1.5e+02 Score=22.41 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCc
Q 008955 81 LWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKV 120 (547)
Q Consensus 81 LWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~ 120 (547)
+..+.+++...++.+. |.+--.|++|.|+++++|.++
T Consensus 10 ~~av~iG~~ayyl~e~---R~~rp~g~~L~eLl~~k~~~~ 46 (47)
T PF11654_consen 10 LFAVFIGTSAYYLYEN---REGRPEGHSLNELLRRKWNKW 46 (47)
T ss_pred HHHHHHHHHHHHHHHH---hccCCCCCcHHHHHHHHhhcc
Confidence 3444555555555555 999999999999999998764
No 101
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.48 E-value=1e+02 Score=28.01 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhcccccc
Q 008955 484 AVYLAGVAYLVLRKNKEA 501 (547)
Q Consensus 484 ~~y~~~~~yl~~~~~~~~ 501 (547)
++-++++.|+..|..++.
T Consensus 78 Ig~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 344567778877766653
No 102
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=22.51 E-value=7.5e+02 Score=24.37 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=39.8
Q ss_pred HHHHhHHHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 008955 403 MILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLG 476 (547)
Q Consensus 403 vi~s~~LPfalipll~~~n~k~iMG~~~n~~~~~il~~~~~~~i~~lni~~l~~~~~~~l~~~~~~~~~~~~~~ 476 (547)
++.++.--|+...+.++..+.+--...|++.|.-++....++++- +.++ +.+.|.+--.+..+|-.+..++|
T Consensus 131 ll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lW-i~v~-i~t~~lPtslN~~L~pi~l~IiG 202 (226)
T COG4858 131 LLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLW-IAVM-IATVFLPTSLNPQLPPIALTIIG 202 (226)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHH-HHHH-HHHhhCCCcCCcCCchHHHHHHH
Confidence 345666778888888887765544456766665555444443333 3333 44445544444445545554444
No 103
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=22.30 E-value=6.7e+02 Score=23.71 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=4.9
Q ss_pred HHHHhcCCc
Q 008955 147 ALNMLFKIP 155 (547)
Q Consensus 147 al~lLfgip 155 (547)
++-++||-+
T Consensus 116 ~fa~lfgg~ 124 (193)
T PF06738_consen 116 AFALLFGGS 124 (193)
T ss_pred HHHHHHCCC
Confidence 444567744
No 104
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=22.05 E-value=6e+02 Score=31.60 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHHHHHHH
Q 008955 406 SFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIIN 450 (547)
Q Consensus 406 s~~LPfalipll~~~n~k~iMG~~~n~~~~~il~~~~~~~i~~ln 450 (547)
+..+|.+++.++..+ ++.---+-+.+.+.+...|++++.++.+.
T Consensus 116 ~a~~~~~~~~~L~~~-R~~F~~~~~~~s~~~~~~~l~~~~~~~~~ 159 (1094)
T PRK02983 116 GFAVHVVAIVLLVLA-RREFPARVRRGALRKALAVLVGGLAVGIL 159 (1094)
T ss_pred HHHHHHHHHHHHHHH-HhhccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 445666666665554 44443333456777777787777666443
No 105
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=21.75 E-value=8.2e+02 Score=27.19 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCcc
Q 008955 397 LIIIASMILSFELPFALVPLLKFTSSKV 424 (547)
Q Consensus 397 Ll~~aqvi~s~~LPfalipll~~~n~k~ 424 (547)
+..+-..+|++--|...--+-++-++|+
T Consensus 123 l~~lng~fQg~Gwpp~~~~i~~Wfsr~e 150 (448)
T COG2271 123 LWVLNGWFQGMGWPPCARTITHWFSRKE 150 (448)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHcCccc
Confidence 3445567899999999998888877665
No 106
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=21.27 E-value=5.6e+02 Score=28.26 Aligned_cols=117 Identities=24% Similarity=0.228 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHH
Q 008955 79 ELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWI 158 (547)
Q Consensus 79 ~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~la~i~~di~eviG~Aial~lLfgipl~~ 158 (547)
.--|.+..+|=.++.+--+ ....++-|...+.++. .+ .+.-|+..++=.|+.. =-++....
T Consensus 126 ~~GW~Ip~ATDIAFalgvL-------------allG~rvp~~l~~FLl---aL-AIvDDl~AIiVIAlfY--t~~i~~~~ 186 (423)
T PRK14853 126 LRGWAIPTATDIAFALAVL-------------AVIGTHLPSALRTFLL---TL-AVVDDLLAITVIAVFY--TSELNLEA 186 (423)
T ss_pred hhhhhhhhhhHHHHHHHHH-------------HHhccccCcHHHHHHH---HH-HHHHHHHHHHhhhecc--CCCCCHHH
Confidence 3447777777666554332 2333444544444432 22 2456766654333221 01243221
Q ss_pred HHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhcccccccc
Q 008955 159 GVLLTGFSTLILL-ALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQL 219 (547)
Q Consensus 159 gvlit~~~~~~lL-~l~~yg~r~lE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~G~~iP~~ 219 (547)
+..++.++.++ .+.+.++|+.... ++....+.+.....-.||-.+.++-|+.+|.-
T Consensus 187 --L~~a~~~~~~l~~l~~~~V~~~~~Y---~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~ 243 (423)
T PRK14853 187 --LLLALVPLALFWLLVQKRVRKWWLL---LPLGVATWILVHESGVHATVAGVLLGFAVPVL 243 (423)
T ss_pred --HHHHHHHHHHHHHHHHcCCchhhHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccc
Confidence 22222223333 3444455544332 22233555565566678888888888888863
No 107
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=20.85 E-value=3.1e+02 Score=27.48 Aligned_cols=41 Identities=20% Similarity=0.502 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHhhhcccCCCcchhhHHHHH
Q 008955 331 SKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLT 374 (547)
Q Consensus 331 ~~iFaigLlaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~t 374 (547)
.-+|++|+|..- +.+ .+|--.=-.|||.|.|+|||.|..+.
T Consensus 181 A~i~AvG~FfvN--AVl-aSYNIgGTIEGfHDPKFKr~p~~via 221 (240)
T PRK00968 181 AGILAVGIFFVN--AVL-ASYNIGGTIEGFHDPKFKRWPRAVIA 221 (240)
T ss_pred HHHHHHHHHHHH--HHH-HhhccCceeecCCCcccccchHHHHH
Confidence 446777776432 232 33321223699999999999987553
Done!