Query 008955
Match_columns 547
No_of_seqs 289 out of 1312
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:31:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 99.1 6.2E-07 2.1E-11 97.6 40.2 158 24-189 9-175 (501)
2 3l1l_A Arginine/agmatine antip 98.5 0.0011 3.7E-08 69.7 39.2 38 318-355 262-299 (445)
3 4djk_A Probable glutamate/gamm 98.3 0.0023 7.9E-08 68.5 34.4 28 328-355 287-314 (511)
4 3dh4_A Sodium/glucose cotransp 98.3 0.00073 2.5E-08 73.9 30.5 116 56-174 31-151 (530)
5 3gia_A Uncharacterized protein 98.2 0.0083 2.8E-07 62.9 43.3 39 318-356 260-298 (444)
6 2xq2_A Sodium/glucose cotransp 98.1 0.0098 3.3E-07 65.8 36.5 115 57-174 61-180 (593)
7 2a65_A Leutaa, Na(+):neurotran 91.1 19 0.00067 38.9 33.9 61 59-119 21-87 (519)
8 3h90_A Ferrous-iron efflux pum 26.3 1.2E+02 0.0042 29.4 6.9 20 175-194 65-84 (283)
9 3j00_Z Cell division protein F 19.8 3.7E+02 0.013 22.1 7.6 6 527-532 48-53 (98)
10 3j1z_P YIIP, cation efflux fam 18.4 1.1E+02 0.0037 30.3 4.7 71 176-252 75-145 (306)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.13 E-value=6.2e-07 Score=97.65 Aligned_cols=158 Identities=11% Similarity=0.045 Sum_probs=93.1
Q ss_pred CccccCCCCcccccCCc-chHHHHHHhhhHHHHHHHhhcCCchHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHh
Q 008955 24 APLIKNEDADQIVVPDK-TSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYK---YELLWIILVASCAALIIQSLAA 99 (547)
Q Consensus 24 ~~~~~~~~~~~~~~~~~-~~~~~~~~~lGPG~Lva~a~idpGni~t~~qaGA~~G---y~LLWvllla~i~~~~~Q~laa 99 (547)
++.+|+.|-++++..++ .++.++ ..+...+-+..+++.......+ | ++-++.+++++++..++-.+.+
T Consensus 9 ~~~~e~~~i~pvp~~~R~~~~~~~------~~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~ 80 (501)
T 2jln_A 9 ARSLLNPSNAPTRYAERSVGPFSL------AAIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQ 80 (501)
T ss_dssp CCBCCCSTTSCCCGGGCCBCHHHH------HHHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccccCCCCCCChhhCCCCHHHH------HHHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566665555544332 233333 2333444555556554433332 3 3445677778888888888999
Q ss_pred hhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----cCCc-hHHHHHHHHHHHHHHHHHH
Q 008955 100 NLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNML----FKIP-VWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 100 RlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~la~i~~di~eviG~Aial~lL----fgip-l~~gvlit~~~~~~lL~l~ 174 (547)
+.|..+|.+-.+..|..||++.+.+.-++..+..++-..-+....+.+++.+ +|++ .+++.++..+.++.+.+.+
T Consensus 81 ~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G 160 (501)
T 2jln_A 81 SAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYG 160 (501)
T ss_dssp HHHHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTH
T ss_pred HHHhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999887765444333333333333444444455444 3876 6788877766555554443
Q ss_pred hhhhHHHHHHHHHHH
Q 008955 175 QYGVRKLEFLIAFLV 189 (547)
Q Consensus 175 ~yg~r~lE~~~~~Lv 189 (547)
-...+++|++...++
T Consensus 161 ~~~i~~~~~~~~p~~ 175 (501)
T 2jln_A 161 ITFIRWMNVFASPVL 175 (501)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333455555544333
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.54 E-value=0.0011 Score=69.66 Aligned_cols=38 Identities=16% Similarity=-0.036 Sum_probs=30.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhH
Q 008955 318 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQY 355 (547)
Q Consensus 318 a~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~ 355 (547)
..+..+...|++...+..++.+.+.+++..+..+++.+
T Consensus 262 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR 299 (445)
T 3l1l_A 262 FGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQ 299 (445)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999998888877776544
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.28 E-value=0.0023 Score=68.50 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhH
Q 008955 328 SWSSKLFAIALLASGQSSTITGTYAGQY 355 (547)
Q Consensus 328 ~~a~~iFaigLlaAg~sStit~t~ag~~ 355 (547)
++...++.++.+.+.+++..+..++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR 314 (511)
T 4djk_A 287 EWTVRVISALLLLGVLAEIASWIVGPSR 314 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888888777766665433
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.27 E-value=0.00073 Score=73.89 Aligned_cols=116 Identities=15% Similarity=0.105 Sum_probs=71.7
Q ss_pred HHHhhcCCchHHHHHHHHHhhhhHHHHHHH---HHH-HHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHH
Q 008955 56 VSIAYIDPGNFETDLQSGAQYKYELLWIIL---VAS-CAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEI 131 (547)
Q Consensus 56 va~a~idpGni~t~~qaGA~~Gy~LLWvll---la~-i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~l 131 (547)
+.++++....+......+..+|+.-.|..+ ++. ++++.+-...-|.+. .+..|..++||++..+.+.-+...+
T Consensus 31 ~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~---~T~~e~l~~Rfg~~~~~~~a~~~l~ 107 (530)
T 3dh4_A 31 LIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGI---YTIPEFVEKRFNKKLKTILAVFWIS 107 (530)
T ss_dssp HHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTTC---CSHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ccHHHHHHHHcCcHHHHHHHHHHHH
Confidence 456788888998898999999987543222 221 223332223334443 6899999999998776543222211
Q ss_pred HHH-HHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 132 AIV-ACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 132 a~i-~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
..+ .....+..+.+..++.++|+|.+.+++++++.+.+.-.++
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~G 151 (530)
T 3dh4_A 108 LYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYG 151 (530)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Confidence 111 1122344566778898999999999988877655444443
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.23 E-value=0.0083 Score=62.91 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHh
Q 008955 318 ASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYV 356 (547)
Q Consensus 318 a~~~L~~~lG~~a~~iFaigLlaAg~sStit~t~ag~~v 356 (547)
..+..++..|++...+..++.+.+.+++..+..+++.+.
T Consensus 260 ~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~ 298 (444)
T 3gia_A 260 LAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANV 298 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888999999999999999998888877765433
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.14 E-value=0.0098 Score=65.82 Aligned_cols=115 Identities=16% Similarity=0.107 Sum_probs=72.5
Q ss_pred HHhhcCCchHHHHHHHHHhhhhHHHHHHH---HH-HHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHH
Q 008955 57 SIAYIDPGNFETDLQSGAQYKYELLWIIL---VA-SCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIA 132 (547)
Q Consensus 57 a~a~idpGni~t~~qaGA~~Gy~LLWvll---la-~i~~~~~Q~laaRlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~la 132 (547)
.+++++...+......+.++|+...|..+ ++ .++++.+-...-|.+. .+..|..++||++..+...-+...+.
T Consensus 61 ~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~---~T~~e~l~~Rfg~~~~~~~ai~~l~~ 137 (593)
T 2xq2_A 61 IAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGI---YTIPEFVEKRFNKKLKTILAVFWISL 137 (593)
T ss_dssp HGGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHTTC---CSHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHhhHhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHccCchHHHHHHHHHHH
Confidence 35678888888888899999987543322 22 2233333233335443 67999999999987765442222211
Q ss_pred -HHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 008955 133 -IVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQ 174 (547)
Q Consensus 133 -~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~ 174 (547)
.+.....+..+.+..++.++|+|.+.++++.++.+.+.-.++
T Consensus 138 ~~~~~~~~~l~~~~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~G 180 (593)
T 2xq2_A 138 YIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYG 180 (593)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhc
Confidence 122223355567788899999999999988776655554444
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=91.09 E-value=19 Score=38.89 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=36.9
Q ss_pred hhcCCchHHHH-----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhh-hcCCCHHHHHHhhCCC
Q 008955 59 AYIDPGNFETD-----LQSGAQYKYELLWIILVASCAALIIQSLAANLGV-VTGKHLAEHCRNEYPK 119 (547)
Q Consensus 59 a~idpGni~t~-----~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgv-vTG~~Lae~~r~~y~~ 119 (547)
..+|-||+=-- -..|..|=---+-.+++.-+..+.++...+|++- .++++..+..|+--|+
T Consensus 21 ~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~ 87 (519)
T 2a65_A 21 NAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 87 (519)
T ss_dssp HHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCS
T ss_pred HHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCC
Confidence 36999998432 3333333222233333344555566777777766 6889999999887665
No 8
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=26.32 E-value=1.2e+02 Score=29.35 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 008955 175 QYGVRKLEFLIAFLVFTMAG 194 (547)
Q Consensus 175 ~yg~r~lE~~~~~Lv~vm~l 194 (547)
.||++|.|.+..++.+++.+
T Consensus 65 pyG~~r~E~l~~l~~~~~l~ 84 (283)
T 3h90_A 65 SFGHGKAESLAALAQSMFIS 84 (283)
T ss_dssp SSCSTTHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHH
Confidence 37899999988777665544
No 9
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=19.83 E-value=3.7e+02 Score=22.10 Aligned_cols=6 Identities=33% Similarity=0.529 Sum_probs=2.2
Q ss_pred CCcccc
Q 008955 527 LPREDI 532 (547)
Q Consensus 527 ~~~~~~ 532 (547)
.+++|+
T Consensus 48 vs~~~I 53 (98)
T 3j00_Z 48 TRNDDI 53 (98)
T ss_dssp SCSSSS
T ss_pred cCHHHH
Confidence 333333
No 10
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=18.36 E-value=1.1e+02 Score=30.27 Aligned_cols=71 Identities=18% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCCChHHHHHHHhcccchhHHHHHHHHHHhhhc
Q 008955 176 YGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRK 252 (547)
Q Consensus 176 yg~r~lE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~G~~iP~~~~~~~l~~avaiiGatimP~nlflhS~lv~~R~ 252 (547)
||++|.|.+..++.+++.+......+ .|-.+.++-|.-+....+...+++++..+.....++.....++.+
T Consensus 75 yG~~R~E~l~al~~~~~l~~~~~~i~------~eai~~l~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 145 (306)
T 3j1z_P 75 YGHGKAEPLAALAQSAFIMGSAFLLL------FYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRALAATN 145 (306)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHHH------HHHHHTTTTTCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH------HHhhhheecCCCccccccchhhhhhHhhhhHHHHHHHHHhccccC
Done!