Query 008956
Match_columns 547
No_of_seqs 328 out of 2284
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 18:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 2.1E-78 4.6E-83 621.0 38.9 382 20-401 93-480 (519)
2 KOG0336 ATP-dependent RNA heli 100.0 1.1E-70 2.4E-75 531.6 29.0 387 12-400 213-603 (629)
3 PTZ00110 helicase; Provisional 100.0 1.1E-68 2.3E-73 577.1 47.5 394 6-400 117-515 (545)
4 KOG0333 U5 snRNP-like RNA heli 100.0 1.1E-69 2.5E-74 539.7 34.5 389 6-397 233-653 (673)
5 KOG0339 ATP-dependent RNA heli 100.0 1.3E-68 2.7E-73 529.5 36.3 393 6-400 211-606 (731)
6 KOG0335 ATP-dependent RNA heli 100.0 5E-69 1.1E-73 542.6 32.3 390 6-397 62-472 (482)
7 KOG0330 ATP-dependent RNA heli 100.0 4.3E-68 9.4E-73 512.1 30.1 366 15-387 58-425 (476)
8 PRK10590 ATP-dependent RNA hel 100.0 2.7E-65 5.9E-70 542.6 48.2 363 19-384 2-367 (456)
9 COG0513 SrmB Superfamily II DN 100.0 1.5E-65 3.2E-70 547.7 42.3 364 18-384 29-396 (513)
10 PLN00206 DEAD-box ATP-dependen 100.0 4.2E-64 9.1E-69 539.9 44.4 393 5-400 108-506 (518)
11 PRK04537 ATP-dependent RNA hel 100.0 1.7E-62 3.7E-67 530.6 51.9 364 18-384 9-379 (572)
12 KOG0341 DEAD-box protein abstr 100.0 2.4E-66 5.1E-71 498.5 18.7 389 5-397 157-557 (610)
13 KOG0342 ATP-dependent RNA heli 100.0 5.2E-64 1.1E-68 497.6 30.7 362 17-378 81-446 (543)
14 KOG0328 Predicted ATP-dependen 100.0 7E-64 1.5E-68 463.8 28.8 374 15-395 24-399 (400)
15 PRK04837 ATP-dependent RNA hel 100.0 9E-61 1.9E-65 504.5 44.4 366 17-385 7-378 (423)
16 KOG0338 ATP-dependent RNA heli 100.0 8.7E-62 1.9E-66 481.6 26.4 360 17-380 180-544 (691)
17 KOG0334 RNA helicase [RNA proc 100.0 2.2E-61 4.8E-66 518.2 31.5 393 6-400 353-751 (997)
18 PRK11776 ATP-dependent RNA hel 100.0 8.4E-60 1.8E-64 502.4 41.8 358 18-383 4-363 (460)
19 PRK11634 ATP-dependent RNA hel 100.0 9.2E-60 2E-64 512.1 41.7 356 17-379 5-362 (629)
20 KOG0326 ATP-dependent RNA heli 100.0 4.1E-62 8.9E-67 459.0 19.2 367 18-392 85-452 (459)
21 KOG0345 ATP-dependent RNA heli 100.0 3.7E-60 8E-65 467.0 33.4 355 19-374 5-369 (567)
22 KOG0340 ATP-dependent RNA heli 100.0 1.4E-60 2.9E-65 455.2 28.4 365 16-384 5-376 (442)
23 PRK11192 ATP-dependent RNA hel 100.0 4.3E-58 9.3E-63 486.2 43.8 362 19-383 2-366 (434)
24 KOG0343 RNA Helicase [RNA proc 100.0 2.4E-59 5.2E-64 468.1 29.3 353 17-371 68-424 (758)
25 PRK01297 ATP-dependent RNA hel 100.0 3.1E-56 6.7E-61 476.3 43.8 367 16-385 85-458 (475)
26 KOG0348 ATP-dependent RNA heli 100.0 2.6E-57 5.6E-62 452.2 29.9 362 18-379 136-564 (708)
27 KOG0346 RNA helicase [RNA proc 100.0 4.9E-56 1.1E-60 434.1 27.6 364 18-382 19-423 (569)
28 PTZ00424 helicase 45; Provisio 100.0 1.7E-54 3.6E-59 454.9 40.9 367 16-389 26-394 (401)
29 KOG0347 RNA helicase [RNA proc 100.0 3.2E-55 6.9E-60 438.5 18.1 365 16-384 179-585 (731)
30 KOG0327 Translation initiation 100.0 5.4E-52 1.2E-56 402.1 25.1 370 16-394 24-395 (397)
31 KOG0332 ATP-dependent RNA heli 100.0 1.7E-51 3.8E-56 394.9 28.1 374 11-396 82-472 (477)
32 KOG0337 ATP-dependent RNA heli 100.0 2.2E-52 4.7E-57 406.8 21.2 359 18-381 21-380 (529)
33 TIGR03817 DECH_helic helicase/ 100.0 4.7E-50 1E-54 444.3 37.7 355 12-382 6-401 (742)
34 KOG0344 ATP-dependent RNA heli 100.0 1.9E-50 4.1E-55 410.1 28.9 391 4-397 118-523 (593)
35 KOG4284 DEAD box protein [Tran 100.0 7E-50 1.5E-54 405.8 23.9 354 10-371 17-381 (980)
36 PLN03137 ATP-dependent DNA hel 100.0 2E-47 4.4E-52 420.6 38.4 336 23-378 442-796 (1195)
37 TIGR00614 recQ_fam ATP-depende 100.0 3.9E-47 8.5E-52 404.7 35.5 324 36-380 7-344 (470)
38 KOG0350 DEAD-box ATP-dependent 100.0 7.7E-48 1.7E-52 382.1 26.2 361 18-382 127-553 (620)
39 PRK11057 ATP-dependent DNA hel 100.0 3.3E-45 7.1E-50 400.0 37.3 321 36-378 21-352 (607)
40 PRK02362 ski2-like helicase; P 100.0 4E-45 8.6E-50 408.9 34.2 334 19-369 2-397 (737)
41 TIGR00580 mfd transcription-re 100.0 3.7E-44 8.1E-49 400.8 40.1 353 25-402 436-808 (926)
42 TIGR01389 recQ ATP-dependent D 100.0 2.7E-44 5.8E-49 393.8 35.1 320 36-378 9-340 (591)
43 PRK13767 ATP-dependent helicas 100.0 3.2E-44 7E-49 405.3 35.3 340 25-368 18-397 (876)
44 PRK10917 ATP-dependent DNA hel 100.0 4E-43 8.7E-48 387.5 40.0 352 26-401 247-621 (681)
45 PRK00254 ski2-like helicase; P 100.0 2.6E-43 5.6E-48 393.4 35.3 335 19-370 2-389 (720)
46 PRK10689 transcription-repair 100.0 1.4E-42 2.9E-47 396.1 40.1 352 26-402 586-957 (1147)
47 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.6E-43 1E-47 381.5 34.2 313 36-366 12-388 (844)
48 TIGR00643 recG ATP-dependent D 100.0 2E-42 4.4E-47 379.6 38.7 349 29-401 225-598 (630)
49 PRK01172 ski2-like helicase; P 100.0 4.8E-42 1E-46 381.5 32.9 334 19-369 2-378 (674)
50 KOG0329 ATP-dependent RNA heli 100.0 8.8E-44 1.9E-48 325.7 13.6 332 20-391 44-378 (387)
51 COG0514 RecQ Superfamily II DN 100.0 3E-40 6.4E-45 345.8 28.8 324 37-381 14-349 (590)
52 COG1201 Lhr Lhr-like helicases 100.0 6.2E-40 1.3E-44 355.2 31.4 336 25-368 8-361 (814)
53 PRK09751 putative ATP-dependen 100.0 2.8E-39 6E-44 370.5 33.1 298 60-363 1-379 (1490)
54 PHA02653 RNA helicase NPH-II; 100.0 7.5E-39 1.6E-43 346.9 31.7 311 42-371 166-516 (675)
55 COG1111 MPH1 ERCC4-like helica 100.0 5E-38 1.1E-42 315.1 34.0 325 37-370 12-482 (542)
56 PRK09401 reverse gyrase; Revie 100.0 2.4E-38 5.2E-43 362.0 35.2 296 37-356 78-431 (1176)
57 PHA02558 uvsW UvsW helicase; P 100.0 7E-38 1.5E-42 335.5 30.7 308 38-366 112-449 (501)
58 PRK14701 reverse gyrase; Provi 100.0 1.3E-37 2.9E-42 362.8 31.3 314 32-367 71-454 (1638)
59 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.1E-37 8.8E-42 341.0 33.4 303 43-370 5-337 (819)
60 KOG0349 Putative DEAD-box RNA 100.0 8.7E-39 1.9E-43 312.0 16.8 276 91-369 287-615 (725)
61 PRK11664 ATP-dependent RNA hel 100.0 9.9E-37 2.1E-41 338.7 31.8 303 43-370 8-340 (812)
62 PRK12898 secA preprotein trans 100.0 2.2E-36 4.8E-41 322.8 32.7 315 40-371 103-588 (656)
63 TIGR01587 cas3_core CRISPR-ass 100.0 3.5E-37 7.7E-42 318.6 25.7 300 57-371 1-338 (358)
64 COG1204 Superfamily II helicas 100.0 1.4E-36 3E-41 333.5 29.6 333 23-367 14-406 (766)
65 COG1200 RecG RecG-like helicas 100.0 4.6E-35 9.9E-40 305.7 33.2 357 23-402 245-624 (677)
66 PRK13766 Hef nuclease; Provisi 100.0 1.3E-34 2.8E-39 327.7 39.8 325 37-370 12-480 (773)
67 COG1202 Superfamily II helicas 100.0 2.5E-35 5.5E-40 297.2 25.1 349 3-368 181-552 (830)
68 PRK09200 preprotein translocas 100.0 8E-35 1.7E-39 317.1 30.7 318 37-371 76-543 (790)
69 TIGR01054 rgy reverse gyrase. 100.0 1E-34 2.3E-39 332.7 32.5 286 33-341 71-409 (1171)
70 TIGR00603 rad25 DNA repair hel 100.0 1.6E-34 3.5E-39 311.8 31.2 319 39-382 254-622 (732)
71 TIGR03158 cas3_cyano CRISPR-as 100.0 4.5E-34 9.7E-39 293.3 31.4 290 44-354 1-357 (357)
72 TIGR03714 secA2 accessory Sec 100.0 3.8E-34 8.3E-39 309.0 31.6 319 39-371 67-539 (762)
73 KOG0354 DEAD-box like helicase 100.0 3.9E-34 8.5E-39 302.9 29.4 337 22-368 44-528 (746)
74 TIGR00963 secA preprotein tran 100.0 1.2E-33 2.6E-38 303.2 29.1 316 40-372 56-520 (745)
75 KOG0351 ATP-dependent DNA heli 100.0 2.3E-33 4.9E-38 310.1 26.2 331 29-377 252-600 (941)
76 COG1205 Distinct helicase fami 100.0 3.9E-32 8.4E-37 302.5 32.4 331 26-367 56-420 (851)
77 PRK04914 ATP-dependent helicas 100.0 7.9E-32 1.7E-36 300.6 33.4 332 40-382 152-616 (956)
78 KOG0352 ATP-dependent DNA heli 100.0 2.1E-32 4.5E-37 267.3 23.5 329 29-377 7-370 (641)
79 KOG0952 DNA/RNA helicase MER3/ 100.0 2.1E-32 4.5E-37 292.6 25.1 327 37-370 107-492 (1230)
80 COG1197 Mfd Transcription-repa 100.0 3.3E-31 7.2E-36 291.1 34.5 355 24-402 578-951 (1139)
81 PRK11131 ATP-dependent RNA hel 100.0 1.1E-31 2.3E-36 303.3 31.5 300 42-370 76-412 (1294)
82 COG1061 SSL2 DNA or RNA helica 100.0 9.5E-31 2.1E-35 275.2 28.3 296 38-356 34-376 (442)
83 PRK05580 primosome assembly pr 100.0 9.4E-30 2E-34 280.3 35.5 313 40-373 144-553 (679)
84 PRK09694 helicase Cas3; Provis 100.0 8.6E-29 1.9E-33 274.7 35.7 312 38-358 284-664 (878)
85 cd00268 DEADc DEAD-box helicas 100.0 1.3E-29 2.9E-34 240.7 24.8 202 20-223 1-202 (203)
86 KOG0353 ATP-dependent DNA heli 100.0 6E-30 1.3E-34 246.6 22.1 334 21-372 74-470 (695)
87 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.6E-28 3.6E-33 278.6 28.2 310 37-371 61-406 (1283)
88 TIGR00595 priA primosomal prot 100.0 3.7E-28 8.1E-33 258.6 25.2 292 59-371 1-383 (505)
89 PRK13104 secA preprotein trans 100.0 1.4E-27 3E-32 260.0 26.7 319 40-371 82-589 (896)
90 KOG0951 RNA helicase BRR2, DEA 100.0 8.8E-28 1.9E-32 260.1 24.7 336 24-370 295-703 (1674)
91 PLN03142 Probable chromatin-re 100.0 4.8E-27 1E-31 263.2 30.5 315 40-366 169-594 (1033)
92 PRK11448 hsdR type I restricti 100.0 4.7E-27 1E-31 268.0 28.9 309 39-358 412-802 (1123)
93 PRK12904 preprotein translocas 100.0 1E-26 2.2E-31 253.0 28.7 311 40-371 81-575 (830)
94 PRK12899 secA preprotein trans 100.0 1.5E-26 3.3E-31 251.3 27.8 149 21-178 65-229 (970)
95 KOG0947 Cytoplasmic exosomal R 100.0 1.1E-26 2.5E-31 246.2 24.3 307 39-367 296-721 (1248)
96 PRK12906 secA preprotein trans 99.9 2.7E-26 5.8E-31 248.8 24.6 319 40-371 80-555 (796)
97 KOG0948 Nuclear exosomal RNA h 99.9 1.6E-26 3.4E-31 239.7 19.8 313 39-369 128-539 (1041)
98 COG4098 comFA Superfamily II D 99.9 6.1E-25 1.3E-29 210.4 29.2 296 40-366 97-413 (441)
99 COG4581 Superfamily II RNA hel 99.9 1.3E-25 2.8E-30 247.2 25.6 312 36-367 116-535 (1041)
100 PF00270 DEAD: DEAD/DEAH box h 99.9 1.4E-25 3.1E-30 206.4 19.0 165 42-211 1-168 (169)
101 KOG0950 DNA polymerase theta/e 99.9 5.5E-25 1.2E-29 235.2 20.7 338 26-375 209-617 (1008)
102 KOG0385 Chromatin remodeling c 99.9 2.9E-24 6.4E-29 223.8 24.7 321 40-372 167-600 (971)
103 PRK13107 preprotein translocas 99.9 2.2E-24 4.9E-29 234.3 23.4 319 40-371 82-593 (908)
104 COG1203 CRISPR-associated heli 99.9 3.1E-23 6.7E-28 230.9 24.6 324 40-370 195-551 (733)
105 COG1643 HrpA HrpA-like helicas 99.9 1.1E-21 2.5E-26 215.1 28.2 302 42-369 52-387 (845)
106 TIGR01407 dinG_rel DnaQ family 99.9 4.5E-21 9.9E-26 217.8 33.0 348 25-382 231-829 (850)
107 COG1110 Reverse gyrase [DNA re 99.9 8.2E-21 1.8E-25 204.3 29.8 282 34-340 76-416 (1187)
108 TIGR00348 hsdR type I site-spe 99.9 5.3E-21 1.2E-25 210.9 29.1 299 40-356 238-634 (667)
109 KOG0387 Transcription-coupled 99.9 2.6E-21 5.7E-26 202.9 23.9 329 39-379 204-671 (923)
110 COG4096 HsdR Type I site-speci 99.9 1.5E-21 3.3E-26 207.1 21.2 306 40-367 165-543 (875)
111 TIGR00631 uvrb excinuclease AB 99.9 7.5E-20 1.6E-24 199.7 32.9 129 249-378 427-562 (655)
112 KOG0922 DEAH-box RNA helicase 99.9 5.4E-20 1.2E-24 191.3 25.9 303 42-371 53-392 (674)
113 KOG0384 Chromodomain-helicase 99.9 2.2E-21 4.7E-26 211.5 15.4 319 39-370 369-812 (1373)
114 KOG0949 Predicted helicase, DE 99.9 1.9E-20 4.2E-25 199.5 21.7 158 40-206 511-672 (1330)
115 KOG0390 DNA repair protein, SN 99.9 1.9E-19 4.2E-24 193.7 29.5 319 39-366 237-702 (776)
116 smart00487 DEXDc DEAD-like hel 99.9 3.7E-20 8E-25 173.8 21.0 187 35-226 3-191 (201)
117 COG1198 PriA Primosomal protei 99.9 1.7E-19 3.7E-24 195.2 28.8 317 39-375 197-609 (730)
118 COG0556 UvrB Helicase subunit 99.9 1.1E-19 2.3E-24 183.8 24.4 118 252-370 435-558 (663)
119 KOG1000 Chromatin remodeling p 99.9 2.8E-20 6.1E-25 185.8 18.9 313 37-367 195-599 (689)
120 KOG1123 RNA polymerase II tran 99.9 6.3E-21 1.4E-25 190.5 14.3 309 38-371 300-655 (776)
121 KOG0923 mRNA splicing factor A 99.8 1.8E-19 3.8E-24 185.6 24.2 305 37-367 262-604 (902)
122 PRK12900 secA preprotein trans 99.8 4.5E-20 9.7E-25 201.7 20.5 127 243-371 577-713 (1025)
123 KOG0392 SNF2 family DNA-depend 99.8 9E-20 2E-24 198.2 22.3 321 40-368 975-1453(1549)
124 PRK05298 excinuclease ABC subu 99.8 1.9E-18 4E-23 190.1 32.0 143 249-392 431-589 (652)
125 PRK12326 preprotein translocas 99.8 8.9E-19 1.9E-23 186.7 26.6 314 40-371 78-549 (764)
126 KOG0920 ATP-dependent RNA heli 99.8 6.5E-19 1.4E-23 192.7 25.4 315 40-369 173-544 (924)
127 COG4889 Predicted helicase [Ge 99.8 3.2E-20 6.9E-25 195.5 14.3 327 18-356 140-572 (1518)
128 KOG0389 SNF2 family DNA-depend 99.8 7.6E-19 1.6E-23 184.4 21.6 319 40-369 399-888 (941)
129 PRK07246 bifunctional ATP-depe 99.8 9.8E-18 2.1E-22 188.2 30.6 331 34-382 240-798 (820)
130 KOG0926 DEAH-box RNA helicase 99.8 4.5E-19 9.9E-24 185.7 18.0 337 46-402 262-735 (1172)
131 KOG0924 mRNA splicing factor A 99.8 8.4E-18 1.8E-22 173.6 23.3 304 37-368 353-696 (1042)
132 PRK13103 secA preprotein trans 99.8 8.3E-18 1.8E-22 183.5 22.5 318 40-371 82-593 (913)
133 PRK08074 bifunctional ATP-depe 99.8 4.6E-16 1E-20 177.8 31.8 121 262-382 751-908 (928)
134 KOG0925 mRNA splicing factor A 99.7 4.3E-17 9.4E-22 162.8 18.2 323 15-369 22-387 (699)
135 PRK12903 secA preprotein trans 99.7 3.1E-16 6.7E-21 169.6 24.7 310 40-371 78-541 (925)
136 TIGR03117 cas_csf4 CRISPR-asso 99.7 4.2E-15 9.2E-20 160.2 32.4 106 262-369 469-616 (636)
137 cd00079 HELICc Helicase superf 99.7 5.2E-17 1.1E-21 142.4 14.6 118 248-365 12-131 (131)
138 PF04851 ResIII: Type III rest 99.7 2.4E-16 5.1E-21 146.7 16.0 153 40-207 3-184 (184)
139 cd00046 DEXDc DEAD-like helica 99.7 3.7E-16 8E-21 137.9 16.5 144 56-205 1-144 (144)
140 CHL00122 secA preprotein trans 99.7 1.5E-15 3.3E-20 165.3 23.8 127 40-177 76-209 (870)
141 KOG0386 Chromatin remodeling c 99.7 8.7E-17 1.9E-21 172.9 13.6 319 40-369 394-836 (1157)
142 KOG4150 Predicted ATP-dependen 99.7 2.3E-16 5E-21 160.0 14.6 330 28-367 273-638 (1034)
143 PF00271 Helicase_C: Helicase 99.7 1.7E-16 3.6E-21 126.2 8.5 76 282-357 2-78 (78)
144 KOG0953 Mitochondrial RNA heli 99.7 2.6E-15 5.6E-20 152.7 19.0 266 58-368 194-476 (700)
145 KOG0391 SNF2 family DNA-depend 99.6 1E-14 2.2E-19 158.0 21.1 118 261-378 1274-1394(1958)
146 KOG0388 SNF2 family DNA-depend 99.6 6.5E-15 1.4E-19 152.8 18.8 122 247-368 1027-1153(1185)
147 PRK12902 secA preprotein trans 99.6 6E-14 1.3E-18 152.6 24.9 127 40-177 85-218 (939)
148 PRK11747 dinG ATP-dependent DN 99.6 2.7E-13 5.9E-18 150.6 29.4 116 263-381 534-688 (697)
149 KOG4439 RNA polymerase II tran 99.6 2.5E-14 5.4E-19 148.9 19.4 120 247-366 728-853 (901)
150 COG1199 DinG Rad3-related DNA 99.6 3.9E-13 8.5E-18 150.0 29.0 117 264-383 480-633 (654)
151 KOG1002 Nucleotide excision re 99.6 3.1E-13 6.8E-18 135.6 23.7 120 261-382 636-760 (791)
152 KOG0951 RNA helicase BRR2, DEA 99.6 4.3E-14 9.4E-19 154.9 18.7 313 38-377 1141-1502(1674)
153 COG0553 HepA Superfamily II DN 99.6 1.6E-13 3.5E-18 158.4 23.1 335 38-380 336-831 (866)
154 TIGR00604 rad3 DNA repair heli 99.6 2.3E-12 4.9E-17 144.2 29.4 73 37-113 7-83 (705)
155 smart00490 HELICc helicase sup 99.5 6E-14 1.3E-18 112.1 8.6 80 278-357 2-82 (82)
156 PF06862 DUF1253: Protein of u 99.5 1.1E-11 2.3E-16 127.8 27.1 289 90-378 37-424 (442)
157 PRK14873 primosome assembly pr 99.5 8E-13 1.7E-17 144.5 19.8 139 59-214 164-312 (665)
158 TIGR02562 cas3_yersinia CRISPR 99.5 2.4E-12 5.3E-17 142.3 22.4 311 39-358 407-881 (1110)
159 KOG1015 Transcription regulato 99.5 2.7E-12 5.8E-17 137.3 20.1 115 252-366 1130-1272(1567)
160 PF02399 Herpes_ori_bp: Origin 99.5 7.8E-12 1.7E-16 135.1 22.8 286 58-368 52-387 (824)
161 PRK12901 secA preprotein trans 99.4 3.1E-12 6.7E-17 140.8 19.1 124 245-371 609-743 (1112)
162 KOG0921 Dosage compensation co 99.4 8.9E-11 1.9E-15 125.5 23.7 304 46-366 384-771 (1282)
163 PF00176 SNF2_N: SNF2 family N 99.4 3.6E-12 7.8E-17 128.2 12.4 157 44-206 1-173 (299)
164 COG0610 Type I site-specific r 99.3 1.2E-10 2.6E-15 132.9 24.2 295 56-367 274-651 (962)
165 PF07652 Flavi_DEAD: Flaviviru 99.3 6E-12 1.3E-16 108.9 6.7 135 55-209 4-140 (148)
166 smart00489 DEXDc3 DEAD-like he 99.2 3.8E-10 8.2E-15 112.5 14.5 73 40-113 8-84 (289)
167 smart00488 DEXDc2 DEAD-like he 99.2 3.8E-10 8.2E-15 112.5 14.5 73 40-113 8-84 (289)
168 KOG2340 Uncharacterized conser 99.1 1.6E-09 3.5E-14 110.3 14.7 344 37-380 213-679 (698)
169 COG0653 SecA Preprotein transl 99.1 3.5E-09 7.6E-14 115.6 17.2 318 40-369 78-545 (822)
170 KOG1016 Predicted DNA helicase 99.0 6.8E-08 1.5E-12 102.3 20.9 109 262-370 718-848 (1387)
171 PF07517 SecA_DEAD: SecA DEAD- 98.8 7.1E-08 1.5E-12 93.9 13.4 128 39-177 76-210 (266)
172 KOG0952 DNA/RNA helicase MER3/ 98.8 1.8E-09 3.8E-14 118.0 1.2 279 20-314 906-1207(1230)
173 KOG1001 Helicase-like transcri 98.7 1.2E-07 2.6E-12 103.7 13.5 100 265-364 541-643 (674)
174 PF13872 AAA_34: P-loop contai 98.7 2.8E-07 6E-12 90.1 12.8 181 11-210 15-225 (303)
175 PRK15483 type III restriction- 98.6 5.2E-07 1.1E-11 101.0 15.2 73 312-384 501-583 (986)
176 TIGR00596 rad1 DNA repair prot 98.6 2.3E-06 4.9E-11 95.8 18.8 66 141-206 8-73 (814)
177 PF13086 AAA_11: AAA domain; P 98.6 8.3E-07 1.8E-11 85.6 12.8 72 40-112 1-75 (236)
178 PF02562 PhoH: PhoH-like prote 98.5 1E-06 2.2E-11 82.4 10.5 146 39-204 3-155 (205)
179 PF13604 AAA_30: AAA domain; P 98.4 9.4E-07 2E-11 83.1 9.7 123 40-204 1-130 (196)
180 COG3587 Restriction endonuclea 98.4 2E-05 4.3E-10 85.6 19.7 74 310-383 481-567 (985)
181 PF13307 Helicase_C_2: Helicas 98.3 2.3E-06 5E-11 78.3 9.5 103 264-368 10-149 (167)
182 TIGR00376 DNA helicase, putati 98.3 0.00011 2.5E-09 81.1 23.8 67 39-112 156-223 (637)
183 PF12340 DUF3638: Protein of u 98.3 9.8E-06 2.1E-10 76.6 12.2 151 19-178 4-186 (229)
184 KOG1802 RNA helicase nonsense 98.2 3.2E-05 7E-10 81.6 15.0 77 32-114 402-478 (935)
185 PRK10536 hypothetical protein; 98.2 2.3E-05 5E-10 75.5 12.1 146 32-201 51-209 (262)
186 PF09848 DUF2075: Uncharacteri 98.1 1E-05 2.2E-10 83.5 10.1 108 57-191 3-117 (352)
187 KOG1132 Helicase of the DEAD s 98.1 3E-05 6.5E-10 84.5 11.6 139 39-178 20-261 (945)
188 TIGR01448 recD_rel helicase, p 98.0 7.3E-05 1.6E-09 83.9 14.7 133 32-204 315-452 (720)
189 TIGR01447 recD exodeoxyribonuc 98.0 7.7E-05 1.7E-09 81.4 14.3 143 42-204 147-295 (586)
190 PRK10875 recD exonuclease V su 98.0 0.00011 2.4E-09 80.4 15.0 143 41-204 153-301 (615)
191 KOG1803 DNA helicase [Replicat 97.9 2.7E-05 5.9E-10 81.8 8.3 65 39-110 184-249 (649)
192 PF13245 AAA_19: Part of AAA d 97.8 8.5E-05 1.8E-09 58.2 7.6 60 48-110 2-62 (76)
193 COG3421 Uncharacterized protei 97.8 0.00017 3.7E-09 75.5 11.3 134 60-207 2-167 (812)
194 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00065 1.4E-08 76.6 15.7 122 39-202 351-474 (744)
195 KOG1805 DNA replication helica 97.7 0.00028 6E-09 77.9 11.0 153 11-178 644-810 (1100)
196 PRK04296 thymidine kinase; Pro 97.6 0.00015 3.3E-09 67.8 7.2 108 57-204 4-114 (190)
197 PRK13889 conjugal transfer rel 97.6 0.0011 2.4E-08 76.1 15.0 124 39-204 345-470 (988)
198 KOG0298 DEAD box-containing he 97.5 0.00028 6.1E-09 79.8 9.0 153 55-212 374-557 (1394)
199 COG1875 NYN ribonuclease and A 97.5 0.0006 1.3E-08 67.9 9.6 145 36-203 224-386 (436)
200 PRK13826 Dtr system oriT relax 97.5 0.0028 6.1E-08 73.3 15.9 137 25-204 367-505 (1102)
201 cd00009 AAA The AAA+ (ATPases 97.4 0.002 4.4E-08 56.4 11.3 18 55-72 19-36 (151)
202 PF00580 UvrD-helicase: UvrD/R 97.4 0.00058 1.2E-08 68.9 8.5 123 41-174 1-125 (315)
203 PRK06526 transposase; Provisio 97.4 0.00032 7E-09 68.6 6.3 111 50-208 93-204 (254)
204 PRK08181 transposase; Validate 97.4 0.0038 8.1E-08 61.5 13.5 121 42-210 89-214 (269)
205 PF13401 AAA_22: AAA domain; P 97.3 0.00061 1.3E-08 59.2 7.0 37 166-205 89-125 (131)
206 KOG0383 Predicted helicase [Ge 97.3 3.9E-05 8.4E-10 83.4 -1.2 65 261-325 629-696 (696)
207 PRK12723 flagellar biosynthesi 97.3 0.0064 1.4E-07 63.0 15.0 130 56-216 175-309 (388)
208 KOG0921 Dosage compensation co 97.3 0.0014 3E-08 71.9 9.9 45 37-81 403-447 (1282)
209 smart00492 HELICc3 helicase su 97.2 0.0028 6E-08 56.1 9.9 74 295-368 30-137 (141)
210 PRK14974 cell division protein 97.2 0.0078 1.7E-07 61.2 14.0 130 57-217 142-276 (336)
211 KOG1131 RNA polymerase II tran 97.2 0.0031 6.7E-08 65.3 10.8 73 37-112 13-89 (755)
212 TIGR02760 TraI_TIGR conjugativ 97.1 0.03 6.6E-07 69.5 21.1 210 40-285 429-648 (1960)
213 smart00382 AAA ATPases associa 97.0 0.0015 3.1E-08 56.8 6.5 42 55-103 2-43 (148)
214 smart00491 HELICc2 helicase su 97.0 0.0035 7.6E-08 55.5 8.8 69 300-368 32-138 (142)
215 PRK07952 DNA replication prote 97.0 0.012 2.5E-07 57.2 13.2 110 56-211 100-211 (244)
216 PF13871 Helicase_C_4: Helicas 97.0 0.0024 5.2E-08 62.5 7.8 64 303-366 52-124 (278)
217 PRK11889 flhF flagellar biosyn 96.9 0.016 3.5E-07 59.5 13.3 127 56-216 242-374 (436)
218 PRK05703 flhF flagellar biosyn 96.9 0.026 5.6E-07 59.5 15.5 127 55-216 221-354 (424)
219 PRK14722 flhF flagellar biosyn 96.9 0.0072 1.6E-07 62.1 10.9 167 19-216 82-269 (374)
220 PRK06921 hypothetical protein; 96.9 0.011 2.3E-07 58.4 11.6 46 54-106 116-161 (266)
221 PF00448 SRP54: SRP54-type pro 96.9 0.0024 5.3E-08 59.9 6.6 54 163-216 82-136 (196)
222 cd01120 RecA-like_NTPases RecA 96.8 0.0096 2.1E-07 53.4 9.9 38 58-102 2-39 (165)
223 PF05970 PIF1: PIF1-like helic 96.8 0.0042 9.2E-08 64.3 8.4 60 40-106 1-66 (364)
224 PRK08116 hypothetical protein; 96.8 0.013 2.8E-07 57.9 11.3 109 57-211 116-227 (268)
225 PRK06835 DNA replication prote 96.7 0.029 6.2E-07 57.0 13.2 111 54-210 182-294 (329)
226 cd01124 KaiC KaiC is a circadi 96.7 0.015 3.3E-07 53.9 10.3 49 58-114 2-50 (187)
227 PRK08727 hypothetical protein; 96.5 0.018 3.8E-07 55.8 10.2 47 163-209 92-140 (233)
228 PHA02533 17 large terminase pr 96.5 0.026 5.7E-07 61.1 12.2 149 39-205 58-210 (534)
229 COG1419 FlhF Flagellar GTP-bin 96.5 0.06 1.3E-06 55.2 13.8 131 55-216 203-335 (407)
230 PRK12377 putative replication 96.5 0.019 4.1E-07 55.9 9.9 107 56-209 102-210 (248)
231 PF14617 CMS1: U3-containing 9 96.5 0.0088 1.9E-07 57.9 7.4 87 88-175 124-212 (252)
232 TIGR01075 uvrD DNA helicase II 96.5 0.011 2.3E-07 67.1 9.3 109 39-175 3-114 (715)
233 PRK14723 flhF flagellar biosyn 96.4 0.047 1E-06 61.0 13.9 141 56-230 186-335 (767)
234 PRK11773 uvrD DNA-dependent he 96.4 0.01 2.2E-07 67.3 9.0 72 39-115 8-79 (721)
235 KOG3973 Uncharacterized conser 96.4 0.024 5.1E-07 55.6 10.0 30 26-55 5-34 (465)
236 PRK11331 5-methylcytosine-spec 96.4 0.024 5.3E-07 59.3 10.5 34 40-73 179-212 (459)
237 KOG0989 Replication factor C, 96.3 0.013 2.8E-07 57.4 7.6 46 160-206 125-170 (346)
238 COG1444 Predicted P-loop ATPas 96.3 0.035 7.6E-07 61.4 11.7 157 25-206 199-357 (758)
239 PRK08769 DNA polymerase III su 96.2 0.04 8.8E-07 55.6 11.0 144 38-204 2-152 (319)
240 PRK05707 DNA polymerase III su 96.2 0.028 6.1E-07 57.1 10.0 35 40-74 3-41 (328)
241 KOG0701 dsRNA-specific nucleas 96.2 0.0043 9.4E-08 73.3 4.3 93 265-357 294-399 (1606)
242 PRK00771 signal recognition pa 96.2 0.053 1.1E-06 57.2 12.1 52 165-216 176-228 (437)
243 PRK14712 conjugal transfer nic 96.2 0.042 9.2E-07 65.9 12.4 64 40-106 835-900 (1623)
244 PRK08084 DNA replication initi 96.2 0.027 5.9E-07 54.5 9.3 44 165-208 98-144 (235)
245 PRK09183 transposase/IS protei 96.2 0.039 8.5E-07 54.2 10.5 47 52-106 99-145 (259)
246 PRK06731 flhF flagellar biosyn 96.2 0.096 2.1E-06 51.6 13.0 127 56-216 76-208 (270)
247 PRK06893 DNA replication initi 96.2 0.012 2.6E-07 56.7 6.6 45 163-207 90-136 (229)
248 COG1484 DnaC DNA replication p 96.1 0.011 2.4E-07 57.8 6.3 51 54-112 104-154 (254)
249 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.037 8.1E-07 53.0 9.8 21 54-74 37-57 (226)
250 PRK05642 DNA replication initi 96.1 0.031 6.8E-07 54.0 9.0 43 164-206 97-140 (234)
251 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.027 5.8E-07 54.6 8.5 52 55-114 21-72 (237)
252 PRK07003 DNA polymerase III su 96.0 0.042 9.1E-07 60.9 10.7 39 163-202 118-156 (830)
253 PF03354 Terminase_1: Phage Te 96.0 0.017 3.7E-07 62.1 7.9 148 43-201 1-159 (477)
254 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.052 1.1E-06 48.9 9.6 54 161-214 92-147 (159)
255 PF05127 Helicase_RecD: Helica 96.0 0.0042 9.1E-08 56.8 2.7 124 59-206 1-124 (177)
256 PRK12727 flagellar biosynthesi 96.0 0.22 4.7E-06 53.4 15.6 164 19-216 300-481 (559)
257 PF13177 DNA_pol3_delta2: DNA 96.0 0.064 1.4E-06 48.7 10.3 43 163-206 101-143 (162)
258 PRK11054 helD DNA helicase IV; 96.0 0.03 6.4E-07 62.6 9.6 72 39-115 195-266 (684)
259 PRK13709 conjugal transfer nic 96.0 0.083 1.8E-06 64.3 13.8 65 39-106 966-1032(1747)
260 PHA02544 44 clamp loader, smal 96.0 0.067 1.5E-06 54.2 11.5 40 164-203 100-139 (316)
261 PF05876 Terminase_GpA: Phage 96.0 0.016 3.5E-07 63.2 7.2 126 39-177 15-147 (557)
262 PRK08533 flagellar accessory p 95.9 0.068 1.5E-06 51.6 10.6 54 53-114 22-75 (230)
263 PRK11634 ATP-dependent RNA hel 95.9 1.4 3E-05 49.2 22.2 73 91-173 246-322 (629)
264 PRK07764 DNA polymerase III su 95.9 0.048 1E-06 62.0 11.0 39 163-202 119-157 (824)
265 PLN03025 replication factor C 95.9 0.08 1.7E-06 53.8 11.7 39 163-202 98-136 (319)
266 KOG1133 Helicase of the DEAD s 95.9 0.49 1.1E-05 51.4 17.4 125 264-401 630-802 (821)
267 PRK05986 cob(I)alamin adenolsy 95.9 0.042 9.1E-07 50.9 8.4 146 53-214 20-167 (191)
268 PRK08903 DnaA regulatory inact 95.9 0.047 1E-06 52.5 9.3 43 164-207 90-133 (227)
269 COG2256 MGS1 ATPase related to 95.8 0.025 5.5E-07 57.5 7.4 19 56-74 49-67 (436)
270 PHA03333 putative ATPase subun 95.8 0.15 3.4E-06 55.7 13.6 69 41-115 170-241 (752)
271 TIGR01073 pcrA ATP-dependent D 95.8 0.029 6.3E-07 63.7 8.6 109 39-174 3-113 (726)
272 PTZ00112 origin recognition co 95.8 0.12 2.5E-06 58.2 12.7 28 163-191 868-895 (1164)
273 PRK05973 replicative DNA helic 95.8 0.058 1.3E-06 52.0 9.3 66 40-114 50-115 (237)
274 TIGR02640 gas_vesic_GvpN gas v 95.8 0.15 3.3E-06 50.2 12.5 28 47-74 13-40 (262)
275 PF00004 AAA: ATPase family as 95.8 0.098 2.1E-06 45.0 10.1 17 164-180 58-74 (132)
276 PRK10919 ATP-dependent DNA hel 95.7 0.026 5.7E-07 63.3 7.9 71 40-115 2-72 (672)
277 COG2805 PilT Tfp pilus assembl 95.7 0.027 5.8E-07 55.2 6.8 53 11-82 99-151 (353)
278 PRK12422 chromosomal replicati 95.7 0.058 1.3E-06 57.3 10.0 53 163-215 201-255 (445)
279 PRK11823 DNA repair protein Ra 95.7 0.05 1.1E-06 57.8 9.3 52 55-114 80-131 (446)
280 KOG1513 Nuclear helicase MOP-3 95.6 0.014 3.1E-07 63.4 4.8 156 38-204 262-453 (1300)
281 TIGR01074 rep ATP-dependent DN 95.5 0.068 1.5E-06 60.1 10.3 70 41-115 2-71 (664)
282 PF05496 RuvB_N: Holliday junc 95.5 0.034 7.4E-07 52.6 6.5 17 57-73 52-68 (233)
283 PTZ00293 thymidine kinase; Pro 95.5 0.035 7.6E-07 52.3 6.6 38 55-99 4-41 (211)
284 COG3973 Superfamily I DNA and 95.5 0.077 1.7E-06 56.6 9.6 93 23-116 187-286 (747)
285 PRK00149 dnaA chromosomal repl 95.5 0.21 4.5E-06 53.4 13.3 47 164-210 211-259 (450)
286 PRK12402 replication factor C 95.4 0.12 2.6E-06 52.7 10.9 39 163-202 124-162 (337)
287 PRK14958 DNA polymerase III su 95.4 0.1 2.3E-06 56.3 10.7 39 163-202 118-156 (509)
288 PF02572 CobA_CobO_BtuR: ATP:c 95.4 0.27 5.8E-06 44.8 11.7 140 58-213 6-147 (172)
289 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.11 2.3E-06 50.0 9.9 53 54-114 19-71 (229)
290 PRK06645 DNA polymerase III su 95.4 0.13 2.8E-06 55.4 11.2 20 56-75 44-63 (507)
291 TIGR00708 cobA cob(I)alamin ad 95.4 0.06 1.3E-06 49.1 7.4 53 162-214 95-149 (173)
292 cd01122 GP4d_helicase GP4d_hel 95.4 0.032 6.9E-07 55.2 6.2 54 51-111 26-79 (271)
293 cd01121 Sms Sms (bacterial rad 95.3 0.086 1.9E-06 54.6 9.4 52 55-114 82-133 (372)
294 TIGR02785 addA_Gpos recombinat 95.3 0.058 1.3E-06 64.7 9.2 124 40-175 1-126 (1232)
295 COG1435 Tdk Thymidine kinase [ 95.3 0.1 2.3E-06 48.0 8.6 88 57-175 6-93 (201)
296 PRK07994 DNA polymerase III su 95.3 0.11 2.4E-06 57.3 10.4 38 163-201 118-155 (647)
297 PRK13341 recombination factor 95.2 0.13 2.8E-06 57.8 11.1 46 164-214 109-154 (725)
298 PRK13342 recombination factor 95.2 0.1 2.2E-06 55.1 9.9 18 56-73 37-54 (413)
299 PRK00411 cdc6 cell division co 95.2 0.13 2.8E-06 53.8 10.6 18 56-73 56-73 (394)
300 KOG0738 AAA+-type ATPase [Post 95.2 0.056 1.2E-06 54.7 7.2 44 56-110 246-289 (491)
301 PRK14086 dnaA chromosomal repl 95.2 0.069 1.5E-06 58.2 8.5 48 163-210 376-425 (617)
302 TIGR00064 ftsY signal recognit 95.2 0.43 9.3E-06 47.2 13.5 55 163-217 153-214 (272)
303 KOG3973 Uncharacterized conser 95.2 0.19 4.1E-06 49.5 10.5 9 387-395 318-326 (465)
304 TIGR03015 pepcterm_ATPase puta 95.2 0.11 2.4E-06 51.2 9.4 35 39-73 22-61 (269)
305 TIGR02760 TraI_TIGR conjugativ 95.1 0.11 2.4E-06 64.7 11.0 62 39-106 1018-1084(1960)
306 COG0470 HolB ATPase involved i 95.1 0.17 3.6E-06 51.3 10.9 40 163-203 108-147 (325)
307 TIGR01425 SRP54_euk signal rec 95.1 0.22 4.9E-06 52.2 11.7 54 163-216 181-235 (429)
308 KOG2028 ATPase related to the 95.1 0.061 1.3E-06 53.9 7.1 48 56-110 163-210 (554)
309 PRK10917 ATP-dependent DNA hel 95.1 0.1 2.2E-06 58.7 10.0 81 256-336 303-389 (681)
310 TIGR01547 phage_term_2 phage t 95.1 0.086 1.9E-06 55.3 8.8 145 57-217 3-152 (396)
311 PRK14873 primosome assembly pr 95.1 0.14 3E-06 57.0 10.7 92 246-338 170-265 (665)
312 PRK04328 hypothetical protein; 95.1 0.15 3.2E-06 49.8 9.8 53 54-114 22-74 (249)
313 KOG0991 Replication factor C, 95.0 0.044 9.6E-07 51.6 5.6 41 163-204 112-152 (333)
314 PRK06964 DNA polymerase III su 95.0 0.15 3.3E-06 52.0 10.0 35 41-75 2-41 (342)
315 PRK12726 flagellar biosynthesi 95.0 0.29 6.3E-06 50.3 11.8 128 55-215 206-338 (407)
316 PRK14087 dnaA chromosomal repl 95.0 0.11 2.4E-06 55.3 9.3 110 56-209 142-253 (450)
317 PRK14964 DNA polymerase III su 95.0 0.12 2.5E-06 55.3 9.4 40 162-202 114-153 (491)
318 PF13173 AAA_14: AAA domain 95.0 0.22 4.8E-06 43.0 9.7 36 164-202 61-96 (128)
319 PRK09111 DNA polymerase III su 95.0 0.11 2.4E-06 57.2 9.3 40 162-202 130-169 (598)
320 TIGR02928 orc1/cdc6 family rep 94.9 0.18 3.9E-06 52.2 10.6 17 56-72 41-57 (365)
321 PRK12323 DNA polymerase III su 94.9 0.12 2.6E-06 56.5 9.3 42 162-204 122-163 (700)
322 PRK08691 DNA polymerase III su 94.9 0.12 2.6E-06 57.1 9.3 39 163-202 118-156 (709)
323 PF00308 Bac_DnaA: Bacterial d 94.9 0.048 1E-06 52.2 5.7 107 57-209 36-144 (219)
324 TIGR00362 DnaA chromosomal rep 94.9 0.17 3.7E-06 53.2 10.3 47 164-210 199-247 (405)
325 PRK14960 DNA polymerase III su 94.9 0.11 2.5E-06 56.8 9.0 39 163-202 117-155 (702)
326 PRK14956 DNA polymerase III su 94.9 0.075 1.6E-06 56.3 7.4 19 57-75 42-60 (484)
327 PRK14961 DNA polymerase III su 94.8 0.16 3.5E-06 52.6 9.7 39 163-202 118-156 (363)
328 TIGR02881 spore_V_K stage V sp 94.8 0.19 4E-06 49.5 9.8 19 56-74 43-61 (261)
329 PF03969 AFG1_ATPase: AFG1-lik 94.8 0.41 8.8E-06 49.4 12.4 110 55-209 62-172 (362)
330 PRK04195 replication factor C 94.8 0.22 4.8E-06 53.7 11.0 19 55-73 39-57 (482)
331 PRK06871 DNA polymerase III su 94.8 0.31 6.8E-06 49.4 11.3 41 163-204 106-146 (325)
332 TIGR03878 thermo_KaiC_2 KaiC d 94.7 0.18 3.9E-06 49.6 9.4 38 54-98 35-72 (259)
333 PRK06067 flagellar accessory p 94.7 0.27 5.8E-06 47.5 10.5 52 55-114 25-76 (234)
334 PRK12724 flagellar biosynthesi 94.7 0.39 8.5E-06 50.1 11.9 54 163-216 298-356 (432)
335 TIGR02639 ClpA ATP-dependent C 94.7 0.29 6.3E-06 55.6 12.1 19 56-74 204-222 (731)
336 PRK08939 primosomal protein Dn 94.6 0.26 5.6E-06 49.7 10.4 50 162-211 215-267 (306)
337 PF05621 TniB: Bacterial TniB 94.6 0.26 5.5E-06 48.9 10.0 54 56-111 62-117 (302)
338 TIGR00595 priA primosomal prot 94.6 0.23 4.9E-06 53.8 10.6 91 247-338 8-101 (505)
339 PRK11034 clpA ATP-dependent Cl 94.6 0.18 4E-06 56.9 10.1 45 165-209 279-327 (758)
340 PRK14959 DNA polymerase III su 94.6 0.18 3.8E-06 55.3 9.7 20 57-76 40-59 (624)
341 KOG0741 AAA+-type ATPase [Post 94.6 0.2 4.4E-06 52.7 9.5 70 22-100 493-574 (744)
342 PHA00729 NTP-binding motif con 94.6 0.23 5.1E-06 47.3 9.3 75 142-216 60-139 (226)
343 PRK14949 DNA polymerase III su 94.5 0.16 3.5E-06 57.5 9.4 38 163-201 118-155 (944)
344 PRK14969 DNA polymerase III su 94.5 0.18 3.9E-06 54.8 9.6 40 162-202 117-156 (527)
345 PRK14088 dnaA chromosomal repl 94.5 0.42 9.1E-06 50.8 12.2 51 164-214 194-246 (440)
346 cd00984 DnaB_C DnaB helicase C 94.5 0.1 2.2E-06 50.6 7.0 48 53-106 11-61 (242)
347 KOG0298 DEAD box-containing he 94.5 0.041 8.8E-07 63.1 4.6 111 253-366 1211-1321(1394)
348 PRK14952 DNA polymerase III su 94.5 0.31 6.8E-06 53.4 11.3 39 163-202 117-155 (584)
349 COG3972 Superfamily I DNA and 94.5 0.26 5.6E-06 51.5 9.8 142 28-176 151-307 (660)
350 PRK05580 primosome assembly pr 94.4 0.25 5.3E-06 55.6 10.7 92 246-338 172-266 (679)
351 TIGR00643 recG ATP-dependent D 94.4 0.18 3.9E-06 56.3 9.6 82 255-336 276-363 (630)
352 PRK14965 DNA polymerase III su 94.4 0.27 5.8E-06 54.1 10.7 40 162-202 117-156 (576)
353 PRK00440 rfc replication facto 94.4 0.58 1.3E-05 47.2 12.6 39 164-203 102-140 (319)
354 PF02456 Adeno_IVa2: Adenoviru 94.4 0.31 6.7E-06 48.0 9.7 38 58-100 90-127 (369)
355 cd03115 SRP The signal recogni 94.3 0.74 1.6E-05 42.0 12.0 54 163-216 81-135 (173)
356 CHL00181 cbbX CbbX; Provisiona 94.3 0.61 1.3E-05 46.5 12.2 21 55-75 59-79 (287)
357 PF06745 KaiC: KaiC; InterPro 94.3 0.11 2.4E-06 49.8 6.7 130 55-204 19-159 (226)
358 PRK07993 DNA polymerase III su 94.3 0.2 4.4E-06 51.1 8.8 42 162-204 106-147 (334)
359 PRK06090 DNA polymerase III su 94.2 0.27 5.8E-06 49.7 9.4 42 162-204 106-147 (319)
360 COG1474 CDC6 Cdc6-related prot 94.2 0.51 1.1E-05 48.7 11.7 28 163-191 122-149 (366)
361 PF01443 Viral_helicase1: Vira 94.2 0.055 1.2E-06 52.1 4.3 23 316-338 184-206 (234)
362 PRK14951 DNA polymerase III su 94.2 0.19 4.1E-06 55.4 8.8 39 163-202 123-161 (618)
363 PRK13833 conjugal transfer pro 94.1 0.15 3.3E-06 51.5 7.5 66 31-103 121-187 (323)
364 PRK09112 DNA polymerase III su 94.1 0.38 8.3E-06 49.4 10.5 42 162-204 139-180 (351)
365 PRK07471 DNA polymerase III su 94.0 0.39 8.4E-06 49.6 10.4 43 162-205 139-181 (365)
366 PRK06995 flhF flagellar biosyn 94.0 0.23 5E-06 52.9 8.8 21 56-76 257-277 (484)
367 PRK08699 DNA polymerase III su 94.0 0.42 9.1E-06 48.6 10.4 35 41-75 2-41 (325)
368 KOG0739 AAA+-type ATPase [Post 94.0 0.56 1.2E-05 46.0 10.5 54 50-114 156-214 (439)
369 PRK07940 DNA polymerase III su 93.9 0.44 9.5E-06 49.8 10.6 41 163-204 116-156 (394)
370 COG2109 BtuR ATP:corrinoid ade 93.9 0.45 9.7E-06 43.6 9.1 142 58-215 31-175 (198)
371 PRK10590 ATP-dependent RNA hel 93.8 0.24 5.2E-06 53.0 8.8 33 343-375 323-355 (456)
372 COG1485 Predicted ATPase [Gene 93.8 0.51 1.1E-05 47.5 10.2 139 26-209 11-175 (367)
373 COG4626 Phage terminase-like p 93.8 0.46 1E-05 50.7 10.4 146 39-203 60-223 (546)
374 PF01695 IstB_IS21: IstB-like 93.8 0.12 2.6E-06 47.7 5.5 49 51-107 43-91 (178)
375 PHA00012 I assembly protein 93.8 1.3 2.8E-05 44.4 12.9 25 58-82 4-28 (361)
376 PRK10867 signal recognition pa 93.7 0.48 1E-05 50.0 10.5 20 58-77 103-122 (433)
377 TIGR00580 mfd transcription-re 93.7 0.28 6.1E-06 56.7 9.4 79 258-336 495-579 (926)
378 PF06733 DEAD_2: DEAD_2; Inte 93.7 0.043 9.2E-07 50.4 2.4 44 135-178 114-159 (174)
379 TIGR03600 phage_DnaB phage rep 93.6 0.33 7.1E-06 51.4 9.4 40 52-97 191-230 (421)
380 PF05729 NACHT: NACHT domain 93.6 1.8 4E-05 38.5 13.1 38 167-204 84-129 (166)
381 PRK05563 DNA polymerase III su 93.6 0.53 1.1E-05 51.6 11.0 20 56-75 39-58 (559)
382 PRK14963 DNA polymerase III su 93.6 0.31 6.7E-06 52.6 9.0 17 58-74 39-55 (504)
383 PRK05896 DNA polymerase III su 93.5 0.36 7.8E-06 52.7 9.4 39 163-202 118-156 (605)
384 PRK14950 DNA polymerase III su 93.5 0.47 1E-05 52.5 10.4 19 57-75 40-58 (585)
385 TIGR02880 cbbX_cfxQ probable R 93.4 0.36 7.8E-06 48.1 8.7 18 56-73 59-76 (284)
386 PRK14957 DNA polymerase III su 93.4 0.47 1E-05 51.5 10.1 39 163-202 118-156 (546)
387 TIGR02012 tigrfam_recA protein 93.4 0.23 4.9E-06 50.2 7.2 43 55-104 55-97 (321)
388 TIGR03880 KaiC_arch_3 KaiC dom 93.4 0.35 7.5E-06 46.3 8.3 52 55-114 16-67 (224)
389 TIGR02655 circ_KaiC circadian 93.4 0.39 8.4E-06 51.8 9.4 61 47-115 250-315 (484)
390 PRK14962 DNA polymerase III su 93.4 0.45 9.8E-06 50.9 9.8 18 57-74 38-55 (472)
391 TIGR00678 holB DNA polymerase 93.3 1.7 3.8E-05 40.1 12.7 39 162-201 94-132 (188)
392 TIGR03499 FlhF flagellar biosy 93.3 0.28 6E-06 48.9 7.7 20 56-75 195-214 (282)
393 PHA03368 DNA packaging termina 93.3 0.43 9.4E-06 52.1 9.4 132 55-205 254-390 (738)
394 TIGR00416 sms DNA repair prote 93.2 0.36 7.9E-06 51.4 8.8 52 55-114 94-145 (454)
395 COG4962 CpaF Flp pilus assembl 93.1 0.28 6.1E-06 49.3 7.2 61 37-105 154-215 (355)
396 PRK09354 recA recombinase A; P 93.1 0.26 5.7E-06 50.2 7.1 43 55-104 60-102 (349)
397 PRK10865 protein disaggregatio 93.0 0.8 1.7E-05 52.9 11.8 19 56-74 200-218 (857)
398 COG0593 DnaA ATPase involved i 93.0 0.48 1E-05 49.2 8.9 48 164-211 175-224 (408)
399 TIGR02782 TrbB_P P-type conjug 93.0 0.36 7.8E-06 48.5 7.9 67 30-103 108-175 (299)
400 PRK13900 type IV secretion sys 93.0 0.28 6E-06 50.0 7.2 45 51-103 156-200 (332)
401 PRK13894 conjugal transfer ATP 93.0 0.32 6.8E-06 49.3 7.5 67 29-102 123-190 (319)
402 TIGR00959 ffh signal recogniti 92.9 0.69 1.5E-05 48.8 10.2 21 58-78 102-122 (428)
403 TIGR03346 chaperone_ClpB ATP-d 92.9 0.94 2E-05 52.4 12.2 18 56-73 195-212 (852)
404 TIGR02524 dot_icm_DotB Dot/Icm 92.9 0.25 5.5E-06 50.8 6.8 26 54-80 133-158 (358)
405 PRK14955 DNA polymerase III su 92.8 0.69 1.5E-05 48.5 10.2 19 57-75 40-58 (397)
406 PRK14721 flhF flagellar biosyn 92.8 0.62 1.3E-05 48.9 9.6 55 162-216 267-323 (420)
407 CHL00095 clpC Clp protease ATP 92.8 0.55 1.2E-05 54.1 10.0 21 56-76 201-221 (821)
408 PRK14948 DNA polymerase III su 92.8 0.77 1.7E-05 50.9 10.8 20 56-75 39-58 (620)
409 TIGR03689 pup_AAA proteasome A 92.7 0.4 8.6E-06 51.6 8.2 18 55-72 216-233 (512)
410 PF07728 AAA_5: AAA domain (dy 92.7 0.059 1.3E-06 47.3 1.7 17 57-73 1-17 (139)
411 PRK10416 signal recognition pa 92.7 2.6 5.5E-05 42.8 13.6 54 163-216 195-255 (318)
412 PRK13851 type IV secretion sys 92.7 0.17 3.8E-06 51.7 5.2 46 50-103 157-202 (344)
413 PRK07414 cob(I)yrinic acid a,c 92.6 2.1 4.6E-05 39.2 11.6 135 58-213 24-166 (178)
414 COG0552 FtsY Signal recognitio 92.5 2.1 4.5E-05 43.0 12.2 129 58-216 142-280 (340)
415 PRK14954 DNA polymerase III su 92.5 0.42 9.1E-06 52.8 8.2 40 162-202 125-164 (620)
416 cd00983 recA RecA is a bacter 92.4 0.22 4.7E-06 50.4 5.4 44 55-105 55-98 (325)
417 PF00265 TK: Thymidine kinase; 92.3 0.32 7E-06 44.7 6.1 35 58-99 4-38 (176)
418 PRK06904 replicative DNA helic 92.3 1.2 2.5E-05 47.8 11.1 116 54-178 220-348 (472)
419 PRK04841 transcriptional regul 92.2 0.87 1.9E-05 53.2 11.1 44 163-206 120-163 (903)
420 KOG1133 Helicase of the DEAD s 92.2 0.18 3.9E-06 54.5 4.8 44 39-82 14-61 (821)
421 cd01394 radB RadB. The archaea 92.2 0.56 1.2E-05 44.6 7.9 36 55-97 19-54 (218)
422 TIGR03345 VI_ClpV1 type VI sec 92.2 1.3 2.7E-05 51.2 12.0 29 45-73 192-226 (852)
423 TIGR02525 plasmid_TraJ plasmid 92.1 0.45 9.7E-06 49.2 7.4 43 55-102 149-191 (372)
424 COG2909 MalT ATP-dependent tra 92.0 0.99 2.1E-05 50.5 10.2 43 164-206 129-171 (894)
425 KOG2036 Predicted P-loop ATPas 92.0 13 0.00029 40.8 18.1 163 19-206 222-412 (1011)
426 PRK10689 transcription-repair 91.9 0.67 1.4E-05 55.0 9.5 76 261-336 647-728 (1147)
427 COG1702 PhoH Phosphate starvat 91.8 0.14 2.9E-06 51.3 3.1 56 38-98 126-181 (348)
428 KOG0744 AAA+-type ATPase [Post 91.8 0.78 1.7E-05 45.6 8.1 113 56-180 178-325 (423)
429 TIGR01241 FtsH_fam ATP-depende 91.7 0.91 2E-05 49.2 9.6 54 16-72 50-105 (495)
430 TIGR00635 ruvB Holliday juncti 91.6 0.3 6.4E-06 49.2 5.5 18 56-73 31-48 (305)
431 PRK07413 hypothetical protein; 91.6 0.44 9.4E-06 49.0 6.6 53 162-214 303-358 (382)
432 TIGR02237 recomb_radB DNA repa 91.6 0.89 1.9E-05 42.9 8.4 38 55-99 12-49 (209)
433 TIGR01243 CDC48 AAA family ATP 91.5 1.2 2.7E-05 50.6 10.9 19 54-72 211-229 (733)
434 PTZ00454 26S protease regulato 91.5 1.1 2.3E-05 47.0 9.5 54 16-72 140-196 (398)
435 PF05707 Zot: Zonular occluden 91.4 0.53 1.2E-05 44.0 6.6 52 164-216 79-136 (193)
436 PF03237 Terminase_6: Terminas 91.4 2 4.4E-05 44.0 11.7 146 59-220 1-154 (384)
437 CHL00176 ftsH cell division pr 91.3 1.2 2.7E-05 49.4 10.2 18 55-72 216-233 (638)
438 PRK07399 DNA polymerase III su 91.2 1.3 2.8E-05 44.8 9.6 59 143-204 104-162 (314)
439 KOG0733 Nuclear AAA ATPase (VC 91.2 1.1 2.5E-05 48.1 9.2 56 16-72 506-562 (802)
440 PF03796 DnaB_C: DnaB-like hel 91.1 0.96 2.1E-05 44.3 8.4 115 55-179 19-145 (259)
441 COG2804 PulE Type II secretory 91.1 0.36 7.7E-06 51.0 5.5 40 42-82 243-284 (500)
442 PRK08506 replicative DNA helic 91.1 1.1 2.4E-05 48.1 9.4 112 55-177 192-315 (472)
443 COG3267 ExeA Type II secretory 91.1 0.77 1.7E-05 44.2 7.2 22 52-73 47-69 (269)
444 COG1198 PriA Primosomal protei 90.9 0.6 1.3E-05 52.2 7.3 96 240-336 221-319 (730)
445 TIGR01243 CDC48 AAA family ATP 90.9 0.71 1.5E-05 52.6 8.1 19 55-73 487-505 (733)
446 TIGR01650 PD_CobS cobaltochela 90.8 2 4.3E-05 43.5 10.2 26 48-73 57-82 (327)
447 COG1110 Reverse gyrase [DNA re 90.7 0.59 1.3E-05 53.0 6.9 61 262-322 124-191 (1187)
448 TIGR01420 pilT_fam pilus retra 90.7 0.72 1.6E-05 47.3 7.3 43 55-103 122-164 (343)
449 PRK08451 DNA polymerase III su 90.6 1.5 3.3E-05 47.4 9.9 40 162-202 115-154 (535)
450 PRK03992 proteasome-activating 90.4 0.83 1.8E-05 47.8 7.6 17 56-72 166-182 (389)
451 COG1200 RecG RecG-like helicas 90.4 1.2 2.7E-05 48.6 8.8 84 253-336 301-390 (677)
452 TIGR00763 lon ATP-dependent pr 90.3 2.2 4.8E-05 48.9 11.5 19 55-73 347-365 (775)
453 TIGR02868 CydC thiol reductant 90.3 0.49 1.1E-05 51.7 6.0 41 162-202 486-526 (529)
454 PHA00350 putative assembly pro 90.3 3 6.6E-05 43.3 11.3 25 58-82 4-29 (399)
455 PRK08840 replicative DNA helic 90.3 2.3 5.1E-05 45.4 10.9 131 38-177 200-342 (464)
456 cd03239 ABC_SMC_head The struc 90.2 0.46 1E-05 43.8 4.8 42 163-204 115-157 (178)
457 cd01129 PulE-GspE PulE/GspE Th 89.9 0.93 2E-05 44.7 7.1 54 42-102 65-120 (264)
458 COG2255 RuvB Holliday junction 89.9 1 2.2E-05 44.1 6.9 19 56-74 53-71 (332)
459 TIGR00767 rho transcription te 89.9 1.7 3.6E-05 45.2 8.9 18 54-71 167-184 (415)
460 cd01126 TraG_VirD4 The TraG/Tr 89.8 0.16 3.4E-06 53.1 1.6 48 57-113 1-48 (384)
461 PF02534 T4SS-DNA_transf: Type 89.7 0.3 6.6E-06 52.4 3.7 50 56-114 45-94 (469)
462 PF01637 Arch_ATPase: Archaeal 89.6 1.2 2.6E-05 42.2 7.5 55 147-205 105-165 (234)
463 TIGR02688 conserved hypothetic 89.5 1.5 3.3E-05 45.8 8.3 25 50-74 204-228 (449)
464 PRK08006 replicative DNA helic 89.5 3 6.6E-05 44.7 11.0 114 55-177 224-349 (471)
465 COG0466 Lon ATP-dependent Lon 89.5 3.4 7.4E-05 45.6 11.2 126 25-192 312-445 (782)
466 PRK00080 ruvB Holliday junctio 89.3 0.74 1.6E-05 46.9 6.1 18 56-73 52-69 (328)
467 PHA03372 DNA packaging termina 89.3 4.8 0.0001 43.7 12.1 124 56-204 203-336 (668)
468 TIGR02858 spore_III_AA stage I 89.3 2.4 5.1E-05 41.9 9.3 23 49-71 102-127 (270)
469 KOG2543 Origin recognition com 89.2 2.8 6.1E-05 42.8 9.7 46 163-208 114-161 (438)
470 KOG1513 Nuclear helicase MOP-3 89.2 0.56 1.2E-05 51.6 5.1 79 305-383 850-940 (1300)
471 KOG0740 AAA+-type ATPase [Post 89.2 1.5 3.2E-05 45.8 8.0 52 163-214 244-308 (428)
472 PRK10436 hypothetical protein; 89.1 1.1 2.4E-05 47.7 7.4 35 45-80 206-242 (462)
473 KOG0737 AAA+-type ATPase [Post 89.0 1.1 2.3E-05 45.4 6.7 53 18-73 89-145 (386)
474 PRK06305 DNA polymerase III su 89.0 1.4 3E-05 47.0 8.0 38 163-201 120-157 (451)
475 PRK05748 replicative DNA helic 88.9 2 4.3E-05 45.9 9.2 113 55-177 203-327 (448)
476 KOG0742 AAA+-type ATPase [Post 88.9 0.43 9.3E-06 48.8 3.8 16 56-71 385-400 (630)
477 COG1066 Sms Predicted ATP-depe 88.7 2.7 6E-05 43.3 9.3 99 47-179 80-183 (456)
478 PRK05636 replicative DNA helic 88.7 1.9 4.2E-05 46.5 8.9 112 56-177 266-388 (505)
479 TIGR02397 dnaX_nterm DNA polym 88.6 2.5 5.5E-05 43.3 9.6 17 57-73 38-54 (355)
480 PRK14971 DNA polymerase III su 88.6 2.1 4.5E-05 47.5 9.3 41 162-204 119-159 (614)
481 TIGR03819 heli_sec_ATPase heli 88.6 1 2.2E-05 46.1 6.4 63 30-102 154-217 (340)
482 TIGR01242 26Sp45 26S proteasom 88.6 2.1 4.5E-05 44.4 8.8 18 55-72 156-173 (364)
483 PRK13764 ATPase; Provisional 88.6 0.98 2.1E-05 49.6 6.6 42 54-102 256-297 (602)
484 KOG0780 Signal recognition par 88.5 3.1 6.7E-05 42.5 9.5 152 37-216 68-236 (483)
485 PRK06647 DNA polymerase III su 88.5 1.9 4.1E-05 47.3 8.8 18 57-74 40-57 (563)
486 COG0630 VirB11 Type IV secreto 88.5 0.95 2E-05 45.7 6.1 57 38-102 125-182 (312)
487 PRK14953 DNA polymerase III su 88.3 2.8 6.1E-05 45.1 9.9 41 162-204 117-157 (486)
488 cd01130 VirB11-like_ATPase Typ 88.3 1 2.2E-05 41.7 5.8 32 40-71 9-41 (186)
489 KOG2170 ATPase of the AAA+ sup 88.2 1.7 3.8E-05 42.8 7.3 55 164-219 178-239 (344)
490 PRK13897 type IV secretion sys 88.2 0.36 7.8E-06 53.1 3.0 50 56-114 159-208 (606)
491 PRK08058 DNA polymerase III su 88.2 3.7 8E-05 41.9 10.2 41 162-203 108-148 (329)
492 PF00437 T2SE: Type II/IV secr 88.0 0.64 1.4E-05 45.9 4.5 44 52-102 124-167 (270)
493 TIGR02533 type_II_gspE general 88.0 1.5 3.1E-05 47.3 7.4 38 42-80 227-266 (486)
494 TIGR00665 DnaB replicative DNA 88.0 2.7 5.8E-05 44.7 9.5 112 55-177 195-318 (434)
495 PRK09376 rho transcription ter 87.9 2.2 4.8E-05 44.1 8.2 18 54-71 168-185 (416)
496 COG4987 CydC ABC-type transpor 87.9 1.1 2.4E-05 47.6 6.2 147 52-204 361-532 (573)
497 cd01125 repA Hexameric Replica 87.8 3.1 6.8E-05 40.2 9.1 54 58-111 4-65 (239)
498 KOG0730 AAA+-type ATPase [Post 87.8 3.6 7.8E-05 44.9 10.0 57 13-72 426-485 (693)
499 COG0467 RAD55 RecA-superfamily 87.7 1.1 2.3E-05 44.1 5.8 55 54-116 22-76 (260)
500 PRK07133 DNA polymerase III su 87.7 6.3 0.00014 44.3 12.2 125 45-216 23-169 (725)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-78 Score=621.03 Aligned_cols=382 Identities=59% Similarity=0.998 Sum_probs=358.5
Q ss_pred CccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhh--ccCCCCCCCEEEEEc
Q 008956 20 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKR--CRNDPRLGPTVLVLS 97 (547)
Q Consensus 20 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~--~~~~~~~~~~vLil~ 97 (547)
|+.++|++++...+...||..|||+|+++||.+++|+|++..|.||||||++|++|++.++.. .......+|++|||+
T Consensus 93 f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~ 172 (519)
T KOG0331|consen 93 FQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLA 172 (519)
T ss_pred hhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEc
Confidence 334445555666677899999999999999999999999999999999999999999999986 233344578999999
Q ss_pred CcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 98 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
||||||.|+.+++.++.....+++.|++|+.++..|...+.++++|+|+||++|+++++.+.+.+.++.|+||||||+|+
T Consensus 173 PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMl 252 (519)
T KOG0331|consen 173 PTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRML 252 (519)
T ss_pred CcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHhC-CCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHH
Q 008956 178 DMGFEPQIRKIVKEV-PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI 256 (547)
Q Consensus 178 ~~g~~~~i~~i~~~l-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 256 (547)
+|||+++++.|+..+ ++.+|+||+|||||.+++.++..++.+|..+.+...++...+..+.|.+..+....|...|..+
T Consensus 253 dmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~l 332 (519)
T KOG0331|consen 253 DMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKL 332 (519)
T ss_pred ccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHH
Confidence 999999999999999 5667999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHhcC--CCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccE
Q 008956 257 LRSQE--PGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRV 333 (547)
Q Consensus 257 l~~~~--~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~ 333 (547)
|.... .+.|+||||+|++.|+.|+..|.+. +++..|||+.+|.+|+.+|+.|++|++.||||||++++|||||+|++
T Consensus 333 L~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~l 412 (519)
T KOG0331|consen 333 LEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDL 412 (519)
T ss_pred HHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccE
Confidence 98774 5569999999999999999999985 89999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHHHHHcCCC
Q 008956 334 VVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGG 401 (547)
Q Consensus 334 VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~l~~~~~g 401 (547)
|||||+|.+.++|+||+|||||+|++|.+++|++..+...+..++++++++.|.+|+.+..++...+.
T Consensus 413 VInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~~ 480 (519)
T KOG0331|consen 413 VINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSGS 480 (519)
T ss_pred EEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999876643
No 2
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-70 Score=531.59 Aligned_cols=387 Identities=47% Similarity=0.828 Sum_probs=360.8
Q ss_pred CCCCCccCCccC-CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccC--CCC
Q 008956 12 EVPPPFMSFDAT-GFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN--DPR 88 (547)
Q Consensus 12 ~~p~~~~~f~~~-~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~--~~~ 88 (547)
++|+|.-+|++. .-.+++++++.+.||.+|+|+|.++||.+|+|.|++.+|.||+|||++||+|.+.++..... ...
T Consensus 213 pIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr 292 (629)
T KOG0336|consen 213 PIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQR 292 (629)
T ss_pred cCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhcc
Confidence 567888888654 56789999999999999999999999999999999999999999999999999988765432 234
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEE
Q 008956 89 LGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYL 168 (547)
Q Consensus 89 ~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~l 168 (547)
.++.+|+++||++|+.|+.-++.++.. .+++.+|++|+....++..++.++.+|+|+||++|.++.....+++..+.||
T Consensus 293 ~~p~~lvl~ptreLalqie~e~~kysy-ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 293 NGPGVLVLTPTRELALQIEGEVKKYSY-NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred CCCceEEEeccHHHHHHHHhHHhHhhh-cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 478999999999999999999988764 4688899999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccc
Q 008956 169 VLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMD 248 (547)
Q Consensus 169 VlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~ 248 (547)
||||||+||||+|+++|++|+-.+.+++|++|+|||||..+..++..++++|..+.++..+ +.....+.|.+.+..+++
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLd-L~a~~sVkQ~i~v~~d~~ 450 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLD-LVAVKSVKQNIIVTTDSE 450 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccc-eeeeeeeeeeEEecccHH
Confidence 9999999999999999999999999999999999999999999999999999999998776 455667889998889999
Q ss_pred hHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHh-cccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCC
Q 008956 249 KHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLD 327 (547)
Q Consensus 249 k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~-~~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiD 327 (547)
|.+.+..+++......|+||||..+..|+.|...|. +.+....+||+..|.+|+.+++.|++|+++|||+||++++|||
T Consensus 451 k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlD 530 (629)
T KOG0336|consen 451 KLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLD 530 (629)
T ss_pred HHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCC
Confidence 999999999999999999999999999999998876 4488889999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHHHHHcCC
Q 008956 328 IKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGG 400 (547)
Q Consensus 328 ip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~l~~~~~ 400 (547)
+|+++||+|||+|.++++|+||+||+||+|++|++++|++..|+..+..++++|+.+.|.||++|..||.+-.
T Consensus 531 v~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk 603 (629)
T KOG0336|consen 531 VPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYK 603 (629)
T ss_pred chhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998654
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-68 Score=577.07 Aligned_cols=394 Identities=52% Similarity=0.888 Sum_probs=361.0
Q ss_pred EEE-ecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhcc
Q 008956 6 LIF-QGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCR 84 (547)
Q Consensus 6 ~~~-~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~ 84 (547)
|++ .|.++|+|+.+|++++|++.+++.|..+||.+|||+|.++||.+++++|+|++||||||||++|++|++.++....
T Consensus 117 i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~ 196 (545)
T PTZ00110 117 ITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQP 196 (545)
T ss_pred cEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcc
Confidence 444 7999999999999999999999999999999999999999999999999999999999999999999998876532
Q ss_pred C-CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCC
Q 008956 85 N-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLN 163 (547)
Q Consensus 85 ~-~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~ 163 (547)
. ....++.+|||+||+|||.|+.+++.++.....+.+.+++++.....+...+..+++|+|+||++|.+++......+.
T Consensus 197 ~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~ 276 (545)
T PTZ00110 197 LLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLR 276 (545)
T ss_pred cccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChh
Confidence 1 223467999999999999999999999998888999999999998888888989999999999999999998888899
Q ss_pred CeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcC-CCeEEEeCcccccccccceeEEEE
Q 008956 164 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANKAITQHIE 242 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~i~~~~~~~~~~~i~~~~~ 242 (547)
++++|||||||+|++++|..++..|+..+++.+|+++||||||.++..++..++. ++..+.+...+ ......+.+.+.
T Consensus 277 ~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-l~~~~~i~q~~~ 355 (545)
T PTZ00110 277 RVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-LTACHNIKQEVF 355 (545)
T ss_pred hCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-cccCCCeeEEEE
Confidence 9999999999999999999999999999999999999999999999999998886 47777665543 334456778888
Q ss_pred EcCccchHHHHHHHHHhcC-CCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc
Q 008956 243 VLAPMDKHRRLEQILRSQE-PGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 320 (547)
Q Consensus 243 ~~~~~~k~~~l~~~l~~~~-~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~ 320 (547)
.+...+|...|..++.... .+.++||||++++.|+.+++.|... +.+..+|+++++.+|+.+++.|++|+++|||||+
T Consensus 356 ~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd 435 (545)
T PTZ00110 356 VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD 435 (545)
T ss_pred EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc
Confidence 8888888888888887764 6679999999999999999999854 8899999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHHHHHcCC
Q 008956 321 VAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGG 400 (547)
Q Consensus 321 ~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~l~~~~~ 400 (547)
++++|||||++++||+||+|.++++|+||+||+||.|++|.+++|+++.+...+..+++.|+++.|.+|++|.+|+....
T Consensus 436 v~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~ 515 (545)
T PTZ00110 436 VASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERS 515 (545)
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987553
No 4
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.1e-69 Score=539.74 Aligned_cols=389 Identities=43% Similarity=0.731 Sum_probs=362.7
Q ss_pred EEEecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccC
Q 008956 6 LIFQGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN 85 (547)
Q Consensus 6 ~~~~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~ 85 (547)
|.+.|..+|.|+.+|++.+||.++++.+...||..|+|+|+++||..++.+|+|..|+||||||++|++|++..+.....
T Consensus 233 is~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~ 312 (673)
T KOG0333|consen 233 ISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPP 312 (673)
T ss_pred eeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999877652
Q ss_pred -----CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCc
Q 008956 86 -----DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI 160 (547)
Q Consensus 86 -----~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~ 160 (547)
+...+|.++||+|||+|++|+.++..+|+...+++++.++|+....++--.+..+|+|+|+||++|.+.|.+..+
T Consensus 313 ~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~l 392 (673)
T KOG0333|consen 313 MARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYL 392 (673)
T ss_pred cchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHH
Confidence 334589999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCCeeEEEEecccccccCCcHHHHHHHHHhCCC-------------------------CceEEEEeccCcHHHHHHHHH
Q 008956 161 SLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA-------------------------RRQTLMYTATWPREVRKIAAD 215 (547)
Q Consensus 161 ~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~-------------------------~~q~l~~SAT~~~~~~~~~~~ 215 (547)
.+.++.+||+||||+|+||+|++++..++..+|. -+|++|||||+|+.+..+++.
T Consensus 393 vl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ 472 (673)
T KOG0333|consen 393 VLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARS 472 (673)
T ss_pred HhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHH
Confidence 9999999999999999999999999999999874 169999999999999999999
Q ss_pred hcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcC
Q 008956 216 LLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 294 (547)
Q Consensus 216 ~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg 294 (547)
+|.+|+.+.++.... ....+.|.+.++...+|...|.+++.... ..++|||+|+++.|+.|++.|.+. +.+..+||
T Consensus 473 ylr~pv~vtig~~gk--~~~rveQ~v~m~~ed~k~kkL~eil~~~~-~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg 549 (673)
T KOG0333|consen 473 YLRRPVVVTIGSAGK--PTPRVEQKVEMVSEDEKRKKLIEILESNF-DPPIIIFVNTKKGADALAKILEKAGYKVTTLHG 549 (673)
T ss_pred HhhCCeEEEeccCCC--CccchheEEEEecchHHHHHHHHHHHhCC-CCCEEEEEechhhHHHHHHHHhhccceEEEeeC
Confidence 999999999988764 45568999999999999999999999873 469999999999999999999876 99999999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHH
Q 008956 295 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYA 374 (547)
Q Consensus 295 ~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~ 374 (547)
+.+|++|+.+++.|+++..+||||||++++|||||+|.+|||||++.++++|+||||||||+|+.|++++|+++.|....
T Consensus 550 ~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ 629 (673)
T KOG0333|consen 550 GKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVF 629 (673)
T ss_pred CccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHH-HhcccccHHHHHHHH
Q 008956 375 SDLIKLLE-GAKQQVPRELRDMAS 397 (547)
Q Consensus 375 ~~l~~~l~-~~~~~v~~~l~~l~~ 397 (547)
.+|.+.|. ......|.++.....
T Consensus 630 ydLkq~l~es~~s~~P~Ela~h~~ 653 (673)
T KOG0333|consen 630 YDLKQALRESVKSHCPPELANHPD 653 (673)
T ss_pred HHHHHHHHHhhhccCChhhccChh
Confidence 88888776 556778888765443
No 5
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-68 Score=529.50 Aligned_cols=393 Identities=47% Similarity=0.763 Sum_probs=368.7
Q ss_pred EEEecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccC
Q 008956 6 LIFQGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN 85 (547)
Q Consensus 6 ~~~~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~ 85 (547)
+.+.|...|.|+.+|+.++|+..|..++.+.-|++|||+|++++|.++.+++++-.|.||||||.+|++|++.++.....
T Consensus 211 lrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e 290 (731)
T KOG0339|consen 211 LRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE 290 (731)
T ss_pred ceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999876544
Q ss_pred C-CCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCC
Q 008956 86 D-PRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQ 164 (547)
Q Consensus 86 ~-~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 164 (547)
- +..+|..||||||++|+.|++.++++|++..+++++++||+..+.++.+.+..+|.||||||++|++++.....++.+
T Consensus 291 L~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 291 LKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred hcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhccccee
Confidence 3 366899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEc
Q 008956 165 VSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL 244 (547)
Q Consensus 165 ~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~ 244 (547)
++|||||||++|.++||+++++.|...+.+++|+|+||||++..++.+++.+|.+|+.+......+ .+..|.|.+.++
T Consensus 371 vS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vge--an~dITQ~V~V~ 448 (731)
T KOG0339|consen 371 VSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGE--ANEDITQTVSVC 448 (731)
T ss_pred eeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhc--cccchhheeeec
Confidence 999999999999999999999999999999999999999999999999999999999988876554 556688888776
Q ss_pred Cc-cchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhc-ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcccc
Q 008956 245 AP-MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVA 322 (547)
Q Consensus 245 ~~-~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~-~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~ 322 (547)
.. ..|...|...|.......++|||+..+..++.++..|+. .+.+..+|+++.|.+|.+++..|+.+.+.|||+||++
T Consensus 449 ~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDva 528 (731)
T KOG0339|consen 449 PSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVA 528 (731)
T ss_pred cCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHh
Confidence 65 456777777777777678999999999999999999985 4999999999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHHHHHcCC
Q 008956 323 ARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGG 400 (547)
Q Consensus 323 ~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~l~~~~~ 400 (547)
++|+|||.+..|||||+..+++.|+|||||+||+|.+|.+|+|+++.|..++-.|++.|+.+.|.||.+|.+|++...
T Consensus 529 argldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s 606 (731)
T KOG0339|consen 529 ARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSS 606 (731)
T ss_pred hcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997543
No 6
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-69 Score=542.62 Aligned_cols=390 Identities=45% Similarity=0.758 Sum_probs=363.8
Q ss_pred EEEecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccC
Q 008956 6 LIFQGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN 85 (547)
Q Consensus 6 ~~~~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~ 85 (547)
+.++|.++|+++..|++..+++.+..++..++|+.|||+|+.+||.+..+++++++|+||+|||.+||+|++.++.....
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999877533
Q ss_pred CC----C--CCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCC
Q 008956 86 DP----R--LGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR 159 (547)
Q Consensus 86 ~~----~--~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~ 159 (547)
.. . ..|.+|||+||||||.|++++++++...+.+.+..+|++.....+...+.++|+|+||||++|.++++.+.
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK 221 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce
Confidence 11 1 24899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEEeccccccc-CCcHHHHHHHHHhCCC----CceEEEEeccCcHHHHHHHHHhcCC-CeEEEeCccccccc
Q 008956 160 ISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPA----RRQTLMYTATWPREVRKIAADLLVN-PVQVNIGNVDELAA 233 (547)
Q Consensus 160 ~~l~~~~~lVlDEaH~ll~-~g~~~~i~~i~~~l~~----~~q~l~~SAT~~~~~~~~~~~~l~~-~~~i~i~~~~~~~~ 233 (547)
+.++++.+|||||||+|+| |+|.++|++|+..... .+|++|||||+|.++..++..++.+ +..+.+..... .
T Consensus 222 i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~--~ 299 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS--T 299 (482)
T ss_pred eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc--c
Confidence 9999999999999999999 9999999999988754 6899999999999999999999987 77777777664 5
Q ss_pred ccceeEEEEEcCccchHHHHHHHHHhcC---CCC-----eEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHH
Q 008956 234 NKAITQHIEVLAPMDKHRRLEQILRSQE---PGS-----KIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYV 304 (547)
Q Consensus 234 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~---~~~-----k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~ 304 (547)
..++.|.+.++...+|...|.++|.... ... +++|||++++.|+.++..|... +++..||++.++.+|+++
T Consensus 300 ~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~a 379 (482)
T KOG0335|consen 300 SENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQA 379 (482)
T ss_pred cccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHH
Confidence 5669999999999999999999998654 233 8999999999999999999865 899999999999999999
Q ss_pred HHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHh
Q 008956 305 LNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGA 384 (547)
Q Consensus 305 l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~ 384 (547)
++.|++|.+.|||||+++++|||||+|+|||+||+|.+..+|+||||||||.|..|.++.|++..+....+.+.++|.++
T Consensus 380 l~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea 459 (482)
T KOG0335|consen 380 LNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEA 459 (482)
T ss_pred HHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHH
Q 008956 385 KQQVPRELRDMAS 397 (547)
Q Consensus 385 ~~~v~~~l~~l~~ 397 (547)
.|.+|+||.+++.
T Consensus 460 ~q~vP~wl~~~~~ 472 (482)
T KOG0335|consen 460 NQEVPQWLSELSR 472 (482)
T ss_pred cccCcHHHHhhhh
Confidence 9999999999654
No 7
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-68 Score=512.11 Aligned_cols=366 Identities=40% Similarity=0.604 Sum_probs=341.9
Q ss_pred CCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEE
Q 008956 15 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVL 94 (547)
Q Consensus 15 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vL 94 (547)
..+.+|.++++.++++++++..+|..||++|.++||.++.|+|||+.|+||||||.+|++|++..+..... .+.+|
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~----~~~~l 133 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK----LFFAL 133 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC----CceEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999887332 37999
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHh-cCCcCCCCeeEEEEecc
Q 008956 95 VLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE-MRRISLNQVSYLVLDEA 173 (547)
Q Consensus 95 il~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~-~~~~~l~~~~~lVlDEa 173 (547)
||+||||||.||.+.+..++...+++++++.||.+...+...+.+.++|+|+||++|.++++ .+.+.+.+++++|+|||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 99999999999999999999999999999999999999999999999999999999999998 67889999999999999
Q ss_pred cccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHH
Q 008956 174 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRL 253 (547)
Q Consensus 174 H~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 253 (547)
|+++++.|.+.+..|++.+|..+|+++||||++..+.++....+.+|..+.+..... .-..+.|++.++....|...|
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~--tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQ--TVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhc--chHHhhhheEeccccccchhH
Confidence 999999999999999999999999999999999999999999999999998876554 445588999999999999999
Q ss_pred HHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCcc
Q 008956 254 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR 332 (547)
Q Consensus 254 ~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~ 332 (547)
+.++++.. +..+||||++-..+..++-.|... +.+..+||.|++..|.-+++.|+++.+.||||||+++||+|+|.|+
T Consensus 292 V~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd 370 (476)
T KOG0330|consen 292 VYLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVD 370 (476)
T ss_pred HHHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCce
Confidence 99999765 479999999999999999999865 8999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhccc
Q 008956 333 VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQ 387 (547)
Q Consensus 333 ~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~ 387 (547)
+|||||+|.+..+||||+||++|+|.+|.+++|++..|-.....|...+......
T Consensus 371 ~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 371 VVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999998888888877777655443
No 8
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.7e-65 Score=542.56 Aligned_cols=363 Identities=43% Similarity=0.714 Sum_probs=325.9
Q ss_pred CCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCC--CCCCCEEEEE
Q 008956 19 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND--PRLGPTVLVL 96 (547)
Q Consensus 19 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~--~~~~~~vLil 96 (547)
+|++++|++.+++.|..+||.+|||+|.++|+.+++++|+|++||||+|||++|++|++..+...... .....++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999987653321 1123589999
Q ss_pred cCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccc
Q 008956 97 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 176 (547)
Q Consensus 97 ~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~l 176 (547)
+||++|+.|+.+.+..+.....+.+..++|+.....+...+...++|+|+||++|.+++....+.++++++|||||||+|
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988889999999999888888888888999999999999999888888999999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHH
Q 008956 177 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI 256 (547)
Q Consensus 177 l~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 256 (547)
++++|...+..++..++..+|+++||||++.++..++..++.++..+.+.... .....+.+++..+....+...+..+
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN--TASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc--ccccceeEEEEEcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887765433 2334567777777777777777777
Q ss_pred HHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEE
Q 008956 257 LRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV 335 (547)
Q Consensus 257 l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI 335 (547)
+... ...++||||+++..++.+++.|.+. +.+..+|+++++.+|..+++.|++|+++|||||+++++|||+|++++||
T Consensus 240 ~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 240 IGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV 318 (456)
T ss_pred HHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE
Confidence 6654 3468999999999999999999865 8899999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHh
Q 008956 336 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGA 384 (547)
Q Consensus 336 ~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~ 384 (547)
+|++|.++++|+||+||+||.|..|.+++|++..+......+.+.+...
T Consensus 319 ~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 319 NYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred EeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998888888877776543
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-65 Score=547.66 Aligned_cols=364 Identities=44% Similarity=0.725 Sum_probs=336.7
Q ss_pred cCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 18 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
..|++++|++.+++++..+||..|||+|.++||.++.++|++++|+||||||++|++|++..+.... ... ...+||++
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~-~~~-~~~aLil~ 106 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV-ERK-YVSALILA 106 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc-ccC-CCceEEEC
Confidence 6799999999999999999999999999999999999999999999999999999999999976431 111 11299999
Q ss_pred CcHHHHHHHHHHHHHhccCC-ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccc
Q 008956 98 PTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 176 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~l 176 (547)
||||||.|+++++.++.... .+.+.+++|+.....+...+..+++|||+||++|++++....+.+..+.++|+||||+|
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrm 186 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRM 186 (513)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhh
Confidence 99999999999999999988 79999999999999999999889999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccc-hHHHHHH
Q 008956 177 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMD-KHRRLEQ 255 (547)
Q Consensus 177 l~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ 255 (547)
++|||.+.+..|+..+|..+|+++||||+|..+..++..++.+|..+.+...........+.|.+..+...+ |...|..
T Consensus 187 Ld~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ 266 (513)
T COG0513 187 LDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLK 266 (513)
T ss_pred hcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888875555446777999998888876 9999999
Q ss_pred HHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEE
Q 008956 256 ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVV 334 (547)
Q Consensus 256 ~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~V 334 (547)
++...... ++||||+|+..++.++..|... +.+..|||+++|.+|+++++.|++|+++||||||++++|||||++++|
T Consensus 267 ll~~~~~~-~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~V 345 (513)
T COG0513 267 LLKDEDEG-RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV 345 (513)
T ss_pred HHhcCCCC-eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccccee
Confidence 99876653 7999999999999999999876 899999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhHhhhccccCCCCceEEEEEecCC-ChHHHHHHHHHHHHh
Q 008956 335 VNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ-DSRYASDLIKLLEGA 384 (547)
Q Consensus 335 I~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~-~~~~~~~l~~~l~~~ 384 (547)
||||+|.++++|+||+|||||+|..|.+++|+++. +...+..+.+.+...
T Consensus 346 inyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 346 INYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred EEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999975 788888888777554
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.2e-64 Score=539.91 Aligned_cols=393 Identities=38% Similarity=0.633 Sum_probs=354.5
Q ss_pred EEEEecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhcc
Q 008956 5 LLIFQGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCR 84 (547)
Q Consensus 5 ~~~~~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~ 84 (547)
.|.+.|.++|+|+.+|++++|++.+++.|...||..|||+|.++||.+++++|+|++||||||||++|++|++.++....
T Consensus 108 ~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~ 187 (518)
T PLN00206 108 EIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIR 187 (518)
T ss_pred CCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999998875422
Q ss_pred C---CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcC
Q 008956 85 N---DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRIS 161 (547)
Q Consensus 85 ~---~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~ 161 (547)
. ....++++|||+||++|+.|+.+.++.+....++.+.+++|+.....+...+..+++|+|+||++|.+++.+..+.
T Consensus 188 ~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~ 267 (518)
T PLN00206 188 SGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIE 267 (518)
T ss_pred cccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCcc
Confidence 1 1124679999999999999999999999888888999999999888888888889999999999999999988889
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEE
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 241 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~ 241 (547)
+.++.+|||||||+|++++|...+..++..++ ..|+++||||++..+..++..++.++..+.+.... .....+.+.+
T Consensus 268 l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~--~~~~~v~q~~ 344 (518)
T PLN00206 268 LDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPN--RPNKAVKQLA 344 (518)
T ss_pred chheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC--CCCcceeEEE
Confidence 99999999999999999999999999998885 67999999999999999999999888888776543 2344566777
Q ss_pred EEcCccchHHHHHHHHHhcC-CCCeEEEEcCChHHHHHHHHHHhc--ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEE
Q 008956 242 EVLAPMDKHRRLEQILRSQE-PGSKIIVFCSTKKMCDQLARNLTR--QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVA 318 (547)
Q Consensus 242 ~~~~~~~k~~~l~~~l~~~~-~~~k~IVF~~s~~~~~~l~~~L~~--~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVa 318 (547)
..+....|...+.+++.... ...++||||+++..++.+++.|.. .+.+..+||++++.+|..+++.|++|+++||||
T Consensus 345 ~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVa 424 (518)
T PLN00206 345 IWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVA 424 (518)
T ss_pred EeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 77777778788888887543 235899999999999999999974 478999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHHHHHc
Q 008956 319 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 398 (547)
Q Consensus 319 T~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~l~~~ 398 (547)
|+++++|||+|++++||+||+|.++++|+||+|||||.|..|.+++|++..+...+.++.+.++...+.+|++|.++...
T Consensus 425 Tdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~~~ 504 (518)
T PLN00206 425 TGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSRYL 504 (518)
T ss_pred ecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987644
Q ss_pred CC
Q 008956 399 GG 400 (547)
Q Consensus 399 ~~ 400 (547)
+.
T Consensus 505 ~~ 506 (518)
T PLN00206 505 GS 506 (518)
T ss_pred hh
Confidence 43
No 11
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-62 Score=530.63 Aligned_cols=364 Identities=38% Similarity=0.615 Sum_probs=322.3
Q ss_pred cCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccC---CCCCCCEEE
Q 008956 18 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN---DPRLGPTVL 94 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~---~~~~~~~vL 94 (547)
.+|++++|++.+++.|..+||..|||+|+++||.+++++|+|++||||||||++|++|++..+..... .....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 46999999999999999999999999999999999999999999999999999999999988754221 111246899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC-CcCCCCeeEEEEecc
Q 008956 95 VLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEA 173 (547)
Q Consensus 95 il~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlDEa 173 (547)
||+||++|+.|+++.+.++....++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999998899999999999888887778888999999999999998764 467889999999999
Q ss_pred cccccCCcHHHHHHHHHhCCC--CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHH
Q 008956 174 DRMLDMGFEPQIRKIVKEVPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 251 (547)
Q Consensus 174 H~ll~~g~~~~i~~i~~~l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 251 (547)
|+|++++|...+..++..++. .+|+++||||++..+..+...++.++..+.+.... .....+.+.+......+|..
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET--ITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc--ccccceeEEEEecCHHHHHH
Confidence 999999999999999999987 68999999999999999999999888776554332 23344667777777777777
Q ss_pred HHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCC
Q 008956 252 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 330 (547)
Q Consensus 252 ~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~ 330 (547)
.+..++... .+.++||||+++..++.+++.|.+. +.+..+|+++++.+|+.+++.|++|+++|||||+++++|||+|+
T Consensus 247 ~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 247 LLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 777777654 4579999999999999999999865 88999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHh
Q 008956 331 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGA 384 (547)
Q Consensus 331 v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~ 384 (547)
+++||+||+|.++++|+||+||+||.|+.|.+++|+++.+.....++.+.+...
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999988877777777665543
No 12
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.4e-66 Score=498.48 Aligned_cols=389 Identities=43% Similarity=0.706 Sum_probs=356.5
Q ss_pred EEEEecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhcc
Q 008956 5 LLIFQGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCR 84 (547)
Q Consensus 5 ~~~~~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~ 84 (547)
-|.+.|+.+|||+.+|.++.||..+++.|+++|+.+|||+|.+.+|.+++|+|.|-.|-||||||++|.+|++.......
T Consensus 157 ~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE 236 (610)
T KOG0341|consen 157 HILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQE 236 (610)
T ss_pred eEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHH
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999887654422
Q ss_pred ----CCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC------CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHH
Q 008956 85 ----NDPRLGPTVLVLSPTRELATQIQDEAVKFGKS------SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDI 154 (547)
Q Consensus 85 ----~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~------~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~ 154 (547)
-....+|..||+||+||||.|+++.+..++.. ..++....+|+.+..+++..+.++.+|+|+||++|.++
T Consensus 237 ~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~Dm 316 (610)
T KOG0341|consen 237 MMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDM 316 (610)
T ss_pred hcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHH
Confidence 22344889999999999999999888776532 34677788999999999999999999999999999999
Q ss_pred HhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccc
Q 008956 155 LEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAAN 234 (547)
Q Consensus 155 l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~ 234 (547)
|.+..+++.-+.|+++||||+|+||||+..++.|+..++..+|+++||||+|..++.+++..+..|+.++++..... +
T Consensus 317 L~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAA--s 394 (610)
T KOG0341|consen 317 LAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAA--S 394 (610)
T ss_pred HHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccccccc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887643 4
Q ss_pred cceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHh-cccceEEEcCCCCHHHHHHHHHHhhcCCC
Q 008956 235 KAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRS 313 (547)
Q Consensus 235 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~-~~~~~~~ihg~~~~~~R~~~l~~F~~g~~ 313 (547)
.++.|.++++..+.|.-.|++.|++..+ ++||||..+.+++.+.++|- +...+..|||+.+|++|..+++.|+.|+.
T Consensus 395 ldViQevEyVkqEaKiVylLeCLQKT~P--pVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkK 472 (610)
T KOG0341|consen 395 LDVIQEVEYVKQEAKIVYLLECLQKTSP--PVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKK 472 (610)
T ss_pred hhHHHHHHHHHhhhhhhhHHHHhccCCC--ceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCC
Confidence 4467778888888898888888887654 89999999999999999986 45889999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCC-ChHHHHHHHHHHHHhcccccHHH
Q 008956 314 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPREL 392 (547)
Q Consensus 314 ~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~-~~~~~~~l~~~l~~~~~~v~~~l 392 (547)
+||||||+++.|+|+|++.||||||+|..+++|+||||||||.|++|.+.+|+++. +...+.++..+|.++.|.+|+.|
T Consensus 473 DVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L 552 (610)
T KOG0341|consen 473 DVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVL 552 (610)
T ss_pred ceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999975 55678888999999999999999
Q ss_pred HHHHH
Q 008956 393 RDMAS 397 (547)
Q Consensus 393 ~~l~~ 397 (547)
..++-
T Consensus 553 ~~L~~ 557 (610)
T KOG0341|consen 553 AELAG 557 (610)
T ss_pred HHhCC
Confidence 98874
No 13
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=5.2e-64 Score=497.62 Aligned_cols=362 Identities=37% Similarity=0.566 Sum_probs=338.3
Q ss_pred ccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 17 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 17 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
...|++..|++..++++..+||..+|++|+.+|+.++.++|+++.|.||+|||+|||+|++..+......+..+..+|||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 34588999999999999999999999999999999999999999999999999999999999999988888888899999
Q ss_pred cCcHHHHHHHHHHHHHhccCC-ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC-CcCCCCeeEEEEeccc
Q 008956 97 SPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEAD 174 (547)
Q Consensus 97 ~Ptr~L~~Q~~~~~~~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlDEaH 174 (547)
|||||||.|++.+++++.... .+.+..++||.......+++..+|+|+|+||++|+|++.+. .+...+++++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999998877 89999999999999888888889999999999999999865 4456678899999999
Q ss_pred ccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCC-CeEEEeCcccccccccceeEEEEEcCccchHHHH
Q 008956 175 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVN-PVQVNIGNVDELAANKAITQHIEVLAPMDKHRRL 253 (547)
Q Consensus 175 ~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~-~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 253 (547)
+++++||+..+..|+..+|..+|+++||||.+.+++++++..+.. +..+.+....+..+...+.|-+.+.....+...+
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll 320 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL 320 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHH
Confidence 999999999999999999999999999999999999999888775 7888888888888888899988888888888889
Q ss_pred HHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCcc
Q 008956 254 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR 332 (547)
Q Consensus 254 ~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~ 332 (547)
..+|+++....++||||+|...+..+++.|+.. ++|..|||+.+|..|..+..+|+..+.-|||||||++||+|+|+|+
T Consensus 321 ~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~ 400 (543)
T KOG0342|consen 321 YTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVD 400 (543)
T ss_pred HHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCce
Confidence 999999887799999999999999999999854 8999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHH
Q 008956 333 VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 378 (547)
Q Consensus 333 ~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~ 378 (547)
+||+||+|.++++||||+|||+|.|+.|.+++|+.+.+..+++.+.
T Consensus 401 ~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 401 WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred EEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999999999999998888777665
No 14
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-64 Score=463.81 Aligned_cols=374 Identities=34% Similarity=0.618 Sum_probs=343.6
Q ss_pred CCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEE
Q 008956 15 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVL 94 (547)
Q Consensus 15 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vL 94 (547)
.+..+|++++|.+++++.++..||.+|..+|+.||+.+++|+|+|++|..|+|||.+|-+.++..+..... ...+|
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r----~tQ~l 99 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVR----ETQAL 99 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccc----eeeEE
Confidence 56779999999999999999999999999999999999999999999999999999888776665544222 34899
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccc
Q 008956 95 VLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 174 (547)
Q Consensus 95 il~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH 174 (547)
||+|||||+.|+.+.+..++...++.+....|+....+.++.+..+++++.+||+++.++++++.+.-..+++||+||||
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEAD 179 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccc-hHHHH
Q 008956 175 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMD-KHRRL 253 (547)
Q Consensus 175 ~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l 253 (547)
.||+.+|..++..+...+|+..|++++|||+|.++.++...|+.+|+.+.+.... + ....+.|++..++.++ |...|
T Consensus 180 emL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrde-l-tlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 180 EMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDE-L-TLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCC-C-chhhhhhheeeechhhhhHhHH
Confidence 9999999999999999999999999999999999999999999999999776543 2 2334777776666555 99999
Q ss_pred HHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCcc
Q 008956 254 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR 332 (547)
Q Consensus 254 ~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~ 332 (547)
.++...+.- .+++|||+|++.+++|.+.+++. |.+..+||+|++++|+.++.+|++|+.+|||+||+-++|+|+|.|+
T Consensus 258 cdLYd~LtI-tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 258 CDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVS 336 (400)
T ss_pred HHHhhhheh-heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeE
Confidence 998887765 58899999999999999999865 8999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHHH
Q 008956 333 VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDM 395 (547)
Q Consensus 333 ~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~l 395 (547)
+|||||+|.+.+.|+|||||.||.|.+|.++-|+...|-..+.++.+++.-...++|..+.++
T Consensus 337 lviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 337 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred EEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 999999999999999999999999999999999999999999999999998888888776543
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9e-61 Score=504.49 Aligned_cols=366 Identities=34% Similarity=0.557 Sum_probs=324.6
Q ss_pred ccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCC---CCCCCEE
Q 008956 17 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND---PRLGPTV 93 (547)
Q Consensus 17 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~---~~~~~~v 93 (547)
-.+|++++|++.++++|..+||..|||+|+++||.+++++|++++||||||||++|++|++..+...... ...++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3689999999999999999999999999999999999999999999999999999999999888653321 1235789
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecc
Q 008956 94 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 173 (547)
Q Consensus 94 Lil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEa 173 (547)
|||+||++||.|+++.+..+....++.+..++|+.....+...+..+++|+|+||++|.+++....+.+.++++||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999988899999999998888888888888999999999999999988889999999999999
Q ss_pred cccccCCcHHHHHHHHHhCCC--CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHH
Q 008956 174 DRMLDMGFEPQIRKIVKEVPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 251 (547)
Q Consensus 174 H~ll~~g~~~~i~~i~~~l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 251 (547)
|+|++++|...+..++..++. .++.++||||++..+..++..++.++..+.+..... ....+.+.+......+|..
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~--~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK--TGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc--CCCceeEEEEeCCHHHHHH
Confidence 999999999999999999885 567899999999999999999999888877654332 2334556566666667777
Q ss_pred HHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCC
Q 008956 252 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 330 (547)
Q Consensus 252 ~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~ 330 (547)
.+..++.... ..++||||+++..|+.+++.|... +.+..+||++++.+|..++++|++|+++|||||+++++|||+|+
T Consensus 245 ~l~~ll~~~~-~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 245 LLQTLIEEEW-PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA 323 (423)
T ss_pred HHHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccc
Confidence 8888876643 469999999999999999999864 89999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhc
Q 008956 331 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAK 385 (547)
Q Consensus 331 v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~ 385 (547)
+++||+||+|.++++|+||+||+||.|+.|.+++|+++.+......+.+.+....
T Consensus 324 v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 324 VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred cCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999887777777666654443
No 16
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-62 Score=481.62 Aligned_cols=360 Identities=36% Similarity=0.552 Sum_probs=323.0
Q ss_pred ccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 17 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 17 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
..+|.++.|+-.+++++...||..|||+|..+||.++.|+|++.+|.||||||.+|++|++..+...... ....+||||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-~~~TRVLVL 258 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-VAATRVLVL 258 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-CcceeEEEE
Confidence 3589999999999999999999999999999999999999999999999999999999999988774443 234689999
Q ss_pred cCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC-CcCCCCeeEEEEecccc
Q 008956 97 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEADR 175 (547)
Q Consensus 97 ~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlDEaH~ 175 (547)
||||||+.|++...+++...+.|.+...+||.....|-..+...+||+|+||++|.+++.+. .+.++++.++|+||||+
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 99999999999999999999999999999999999999999999999999999999999754 68899999999999999
Q ss_pred cccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcC---ccchHHH
Q 008956 176 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA---PMDKHRR 252 (547)
Q Consensus 176 ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~---~~~k~~~ 252 (547)
||+.+|..++.+|+..+|+.+|+++||||++.++.+++.-.+..|+.+.+....... ..+.|.+..+. +.++...
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a--~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTA--PKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccc--hhhhHHHheeccccccccHHH
Confidence 999999999999999999999999999999999999999999999999887655433 33455443332 2345556
Q ss_pred HHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCc
Q 008956 253 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 331 (547)
Q Consensus 253 l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v 331 (547)
+..++.... ..++|||+.|++.|..+.-.|--. +.+..+||.++|.+|-..++.|++.+++||||||++++||||+.|
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 666666555 479999999999999998877543 778899999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHH
Q 008956 332 RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKL 380 (547)
Q Consensus 332 ~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~ 380 (547)
.+||||++|.+.+.|+||+|||.|+|..|.+++|+.+.+...++.+++.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999888877777654
No 17
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-61 Score=518.19 Aligned_cols=393 Identities=43% Similarity=0.734 Sum_probs=366.6
Q ss_pred EEEecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccC
Q 008956 6 LIFQGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN 85 (547)
Q Consensus 6 ~~~~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~ 85 (547)
|++.|..+|.|+.+|.++++...++..++++||..|+|+|.+|||+|+.|++||.+|.||||||++|++|++.++...+.
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999977665432
Q ss_pred -CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCC---cC
Q 008956 86 -DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR---IS 161 (547)
Q Consensus 86 -~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~---~~ 161 (547)
....||.+|||+||++|+.||.+++++|...+++.++|+||+....+++..+++++.|+||||+++++++.... .+
T Consensus 433 ~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 433 LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTN 512 (997)
T ss_pred hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccc
Confidence 23348999999999999999999999999999999999999999999999999999999999999999886544 34
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEE
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 241 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~ 241 (547)
+.++.++|+||||+|.+++|.+++..|++.+++.+|+++||||+|..+..+++..+..|+.+.+. ........+.|.+
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v 590 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVV 590 (997)
T ss_pred ccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEE
Confidence 55667999999999999999999999999999999999999999999999999999999987776 3455667788888
Q ss_pred EEcC-ccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEc
Q 008956 242 EVLA-PMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT 319 (547)
Q Consensus 242 ~~~~-~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT 319 (547)
.++. ..+|...|.++|.+..+..++||||.+...|+.+.+.|.+. +.|..+||+.++.+|+.++++|+++.+.+||+|
T Consensus 591 ~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaT 670 (997)
T KOG0334|consen 591 RVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVAT 670 (997)
T ss_pred EEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEeh
Confidence 8888 88999999999999988899999999999999999999865 888889999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHHHHHcC
Q 008956 320 DVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRG 399 (547)
Q Consensus 320 ~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~l~~~~ 399 (547)
+++++|+|++.+.+|||||+|...++|+||.|||+|+|.+|.|++|+.+.+..++.+|.+.++...+.+|..|..|..+-
T Consensus 671 svvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f 750 (997)
T KOG0334|consen 671 SVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERF 750 (997)
T ss_pred hhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred C
Q 008956 400 G 400 (547)
Q Consensus 400 ~ 400 (547)
.
T Consensus 751 ~ 751 (997)
T KOG0334|consen 751 K 751 (997)
T ss_pred H
Confidence 3
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=8.4e-60 Score=502.39 Aligned_cols=358 Identities=42% Similarity=0.679 Sum_probs=325.2
Q ss_pred cCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 18 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
.+|++++|++.++++|..+||.+|||+|+++|+.+++++|++++||||+|||++|++|++..+.... ...++|||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~----~~~~~lil~ 79 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR----FRVQALVLC 79 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc----CCceEEEEe
Confidence 5799999999999999999999999999999999999999999999999999999999999875421 145899999
Q ss_pred CcHHHHHHHHHHHHHhccC-CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccc
Q 008956 98 PTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 176 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~l 176 (547)
||++|+.|+.++++.+... .++.+..++|+.+...+...+..+++|+|+||++|.+++....+.+.++++|||||||+|
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRM 159 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHH
Confidence 9999999999999988764 368899999999998888888889999999999999999988888999999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHH
Q 008956 177 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI 256 (547)
Q Consensus 177 l~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 256 (547)
++++|...+..++..++..+|+++||||+++.+..+...++.++..+.+.... ....+.+.+..+...+|...+..+
T Consensus 160 l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 160 LDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred hCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888775543 233467777777777888888888
Q ss_pred HHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEE
Q 008956 257 LRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV 335 (547)
Q Consensus 257 l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI 335 (547)
+.... ..++||||++++.++.+++.|.+. +.+..+||++++.+|+.+++.|++|+++|||||+++++|||+|++++||
T Consensus 237 l~~~~-~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 237 LLHHQ-PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHhcC-CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 87654 368999999999999999999865 8899999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHH
Q 008956 336 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEG 383 (547)
Q Consensus 336 ~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~ 383 (547)
+||+|.++++|+||+|||||+|+.|.+++|+.+.+......+.+.+..
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999887777777666544
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.2e-60 Score=512.10 Aligned_cols=356 Identities=38% Similarity=0.638 Sum_probs=320.3
Q ss_pred ccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 17 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 17 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
..+|++++|++.++++|..+||.+|+|+|.++|+.+++++|+|++||||+|||++|++|++..+.... ..+++|||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~----~~~~~LIL 80 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL----KAPQILVL 80 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc----CCCeEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999998875421 24689999
Q ss_pred cCcHHHHHHHHHHHHHhccCC-ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc
Q 008956 97 SPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 175 (547)
Q Consensus 97 ~Ptr~L~~Q~~~~~~~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ 175 (547)
+||++|+.|+++++.++.... ++.+..++++.....++..+..+++|+|+||++|++++....+.+.++.+|||||||+
T Consensus 81 ~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 81 APTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 (629)
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH
Confidence 999999999999999887653 7889999999988888888888999999999999999998888999999999999999
Q ss_pred cccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHH
Q 008956 176 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 255 (547)
Q Consensus 176 ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 255 (547)
|++++|...+..++..++..+|+++||||+|..+..+...++.++..+.+.... .....+.+.+..+....|...|..
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~--~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV--TTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc--ccCCceEEEEEEechhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999887765433 233456677777777788888888
Q ss_pred HHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEE
Q 008956 256 ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVV 334 (547)
Q Consensus 256 ~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~V 334 (547)
++.... ..++||||+++..++.+++.|.+. +.+..+|+++++.+|+.+++.|++|+++|||||+++++|||+|++++|
T Consensus 239 ~L~~~~-~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhcC-CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 887654 368999999999999999999865 889999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHH
Q 008956 335 VNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIK 379 (547)
Q Consensus 335 I~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~ 379 (547)
|+||+|.++++|+||+|||||+|+.|.+++|+++.+...+..+.+
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHH
Confidence 999999999999999999999999999999998766555554433
No 20
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-62 Score=458.98 Aligned_cols=367 Identities=32% Similarity=0.552 Sum_probs=344.1
Q ss_pred cCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 18 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
+.|+++.|..+++..+..+||..|.|+|.++||.++.|+|+++.|..|+|||.+|++|++..+..... ...++|++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~----~IQ~~ilV 160 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKN----VIQAIILV 160 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcccc----ceeEEEEe
Confidence 56899999999999999999999999999999999999999999999999999999999998765333 45789999
Q ss_pred CcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 98 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
||||||.|+...++.+.+..++.+...+||+.....+-++....+++|+||++++++.+++-..++++.++|+||||.|+
T Consensus 161 PtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlL 240 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLL 240 (459)
T ss_pred ecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhh
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHH
Q 008956 178 DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL 257 (547)
Q Consensus 178 ~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 257 (547)
+..|.+.+..++..+|+.+|++++|||+|-.+..+...++.+|..+++...- ....+.|++.++.+..|...|..++
T Consensus 241 s~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL---tl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 241 SVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL---TLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred chhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhh---hhcchhhheeeechhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999875533 3456899999999999999999999
Q ss_pred HhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE
Q 008956 258 RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN 336 (547)
Q Consensus 258 ~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~ 336 (547)
.+..-+ ..|||||+...++.+|+.+.+. +.|..+|+.|-|++|.++..+|++|.|+.|||||.+.+|||++.+++|||
T Consensus 318 skLqIN-QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 318 SKLQIN-QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HHhccc-ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 887664 6789999999999999999876 89999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHH
Q 008956 337 YDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 392 (547)
Q Consensus 337 ~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l 392 (547)
||+|.++++|+|||||.||.|..|.++.|++.+|...+..+.+.|......+|..+
T Consensus 397 FDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 397 FDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred cCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 99999999999999999999999999999999999999999999988888887543
No 21
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-60 Score=466.95 Aligned_cols=355 Identities=38% Similarity=0.584 Sum_probs=318.1
Q ss_pred CCccCCC--CHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCC-CEEEE
Q 008956 19 SFDATGF--PPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLG-PTVLV 95 (547)
Q Consensus 19 ~f~~~~l--~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~-~~vLi 95 (547)
+|+++.. .+++++++...||..+||+|..+||.++.++|+++.|+||||||+||++|++..+.+...+..++ --+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 5555554 49999999999999999999999999999999999999999999999999999985544332222 46899
Q ss_pred EcCcHHHHHHHHHHHHHhccC-CceEEEEecCCCCChhhHHHhhC-CCcEEEECcHHHHHHHhcCC--cCCCCeeEEEEe
Q 008956 96 LSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRR--ISLNQVSYLVLD 171 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~-~~i~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~--~~l~~~~~lVlD 171 (547)
|+|||||+.||.+.+..|... ..+++.+++||....+....+.+ +++|+|+||++|.+++.+.. +++..+++||+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999999888765 67899999999988888877765 68999999999999998754 445599999999
Q ss_pred cccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHH
Q 008956 172 EADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 251 (547)
Q Consensus 172 EaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 251 (547)
|||++++|||...+..|+..+|+.+.+=+||||...++.++.+..+.+|..+.+........+......+..+.+.+|..
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~ 244 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLS 244 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887766556656777888899999999
Q ss_pred HHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc---cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCC
Q 008956 252 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDI 328 (547)
Q Consensus 252 ~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~---~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDi 328 (547)
.+.++|.... ..++|||++|=..++.+...|..- ..+..+||.|.+..|..+++.|+...-.+|+|||++++||||
T Consensus 245 ~lv~~L~~~~-~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi 323 (567)
T KOG0345|consen 245 QLVHLLNNNK-DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI 323 (567)
T ss_pred HHHHHHhccc-cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC
Confidence 9999998754 479999999999999999888753 678999999999999999999999888899999999999999
Q ss_pred CCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHH
Q 008956 329 KDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYA 374 (547)
Q Consensus 329 p~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~ 374 (547)
|++++||+||+|.++..|+||+|||+|+|..|.+++|+.+.+..|.
T Consensus 324 p~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 324 PGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYV 369 (567)
T ss_pred CCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHH
Confidence 9999999999999999999999999999999999999998665543
No 22
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-60 Score=455.17 Aligned_cols=365 Identities=33% Similarity=0.510 Sum_probs=332.8
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEE
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 95 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLi 95 (547)
...+|..++|.+++.+.+..+++.+|||+|..+||.||+|+|+|-+|.||||||++|.+|++..+.... .+..+||
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP----~giFalv 80 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP----YGIFALV 80 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC----CcceEEE
Confidence 457899999999999999999999999999999999999999999999999999999999999987743 3678999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC----CcCCCCeeEEEEe
Q 008956 96 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR----RISLNQVSYLVLD 171 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~----~~~l~~~~~lVlD 171 (547)
++|||||+.|+.+.|..+++...+++.+++|+...-.+...+.+.+|++|+||++|.++++.. ...+.++.++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999999999999999999999988888889999999999999999988754 3447899999999
Q ss_pred cccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHH
Q 008956 172 EADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 251 (547)
Q Consensus 172 EaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 251 (547)
|||+|++-.|...+.-+.+.+|..+|+++||||+.+.+.++.......+..+.....+.........|.+..+....|..
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 99999999999999999999999999999999999988887776666555555555566667777888899999999999
Q ss_pred HHHHHHHhcCC--CCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCC
Q 008956 252 RLEQILRSQEP--GSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDI 328 (547)
Q Consensus 252 ~l~~~l~~~~~--~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDi 328 (547)
.+..+|..... ...++||+++..+|+.|+..|+.. +.+..+|+.|+|.+|-.++..|+++..+|||||||+++|+||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999987654 679999999999999999999865 889999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHh
Q 008956 329 KDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGA 384 (547)
Q Consensus 329 p~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~ 384 (547)
|.|+.|||+|.|.+|.+|+||+||++|+|..|.+++|+++.|......+.+.+...
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998888777777666543
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.3e-58 Score=486.17 Aligned_cols=362 Identities=36% Similarity=0.571 Sum_probs=319.9
Q ss_pred CCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 19 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 19 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
+|++++|++.+++.|..+||.+|+++|.++|+.+++++|+|++||||+|||++|++|++.++..........+++|||+|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999988654333333568999999
Q ss_pred cHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccccc
Q 008956 99 TRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 178 (547)
Q Consensus 99 tr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~ 178 (547)
|++|+.|+++.+..+....++.+..++|+.....+...+...++|+|+||++|.+++....+.+.++++|||||||+|++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999998889999999999998888877888899999999999999998888899999999999999999
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEeccCcH-HHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcC-ccchHHHHHHH
Q 008956 179 MGFEPQIRKIVKEVPARRQTLMYTATWPR-EVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA-PMDKHRRLEQI 256 (547)
Q Consensus 179 ~g~~~~i~~i~~~l~~~~q~l~~SAT~~~-~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~ 256 (547)
++|...+..+...++...|+++||||++. .+..+...++.++..+.+..... ....+.+.+.... ...|...+..+
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRR--ERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcc--cccCceEEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999985 47788888888888776654332 2333555555444 35566677777
Q ss_pred HHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEE
Q 008956 257 LRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV 335 (547)
Q Consensus 257 l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI 335 (547)
++.. ...++||||++++.++.+++.|+.. +.+..+|+++++.+|..+++.|++|+++|||||+++++|||+|++++||
T Consensus 240 ~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 240 LKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred HhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 6543 3479999999999999999999864 8899999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHH
Q 008956 336 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEG 383 (547)
Q Consensus 336 ~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~ 383 (547)
+||+|.+.+.|+||+||+||.|.+|.+++|++..|......+.+++..
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998888877777766643
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-59 Score=468.06 Aligned_cols=353 Identities=36% Similarity=0.513 Sum_probs=327.9
Q ss_pred ccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 17 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 17 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
+..|++++|++..++.|..++|..||.+|+++||.+|+|+|||..|.||||||+||++|++..+.+..=.+..|--+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 45799999999999999999999999999999999999999999999999999999999999998865555557789999
Q ss_pred cCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHh-cCCcCCCCeeEEEEecccc
Q 008956 97 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE-MRRISLNQVSYLVLDEADR 175 (547)
Q Consensus 97 ~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~-~~~~~l~~~~~lVlDEaH~ 175 (547)
+||||||.|+++.+.+.+....+++-.++||.+....+.++ ..++|+||||++|+.++. .-.++-.++.+|||||||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 99999999999999999999999999999999866555554 358999999999998886 4467778999999999999
Q ss_pred cccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHH
Q 008956 176 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 255 (547)
Q Consensus 176 ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 255 (547)
|++|||...+..|++.+|+.+|+|+||||....+.++++..+.+|..+.+........+..+.|++.++...+|...|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988877667778889999999999999999999
Q ss_pred HHHhcCCCCeEEEEcCChHHHHHHHHHHhcc---cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCcc
Q 008956 256 ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR 332 (547)
Q Consensus 256 ~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~---~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~ 332 (547)
+++.+.. .++|||++|-+++..+++.+.+. .++..+||.|+|..|..+...|.....-||+|||++++|+|+|.|+
T Consensus 307 FI~shlk-~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 307 FIKSHLK-KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHhccc-cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 9998765 69999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 333 VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 333 ~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
+||++|.|.++++|+||+||++|....|.+++++.+.+.
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 999999999999999999999999999999999998873
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.1e-56 Score=476.29 Aligned_cols=367 Identities=37% Similarity=0.595 Sum_probs=323.5
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCC---CCCCCE
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND---PRLGPT 92 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~---~~~~~~ 92 (547)
....|.+++|++.+++.|.+.||..||++|.++|+.+++|+|+|+++|||||||++|++|++..+...... ....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 34578899999999999999999999999999999999999999999999999999999999987653221 111468
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEe
Q 008956 93 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLD 171 (547)
Q Consensus 93 vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlD 171 (547)
+|||+||++|+.|+++.++.+....++.+..++|+.....+...+.. .++|+|+||++|.+++......+.++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 99999999999999999999988888999999999887777766654 58999999999999998888889999999999
Q ss_pred cccccccCCcHHHHHHHHHhCCC--CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccch
Q 008956 172 EADRMLDMGFEPQIRKIVKEVPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDK 249 (547)
Q Consensus 172 EaH~ll~~g~~~~i~~i~~~l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k 249 (547)
|||++++++|...+..++..++. .+|++++|||++..+..++..++.++..+.+.... .....+.+++..+...++
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN--VASDTVEQHVYAVAGSDK 322 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc--CCCCcccEEEEEecchhH
Confidence 99999999999999999998865 57999999999999999999999998887665433 223345667777777778
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCC
Q 008956 250 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDI 328 (547)
Q Consensus 250 ~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDi 328 (547)
...+..++.... ..++||||++++.++.+++.|.+. +.+..+||++++.+|..+++.|++|+++|||||+++++||||
T Consensus 323 ~~~l~~ll~~~~-~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 323 YKLLYNLVTQNP-WERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHhcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 888888776543 469999999999999999999865 789999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhc
Q 008956 329 KDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAK 385 (547)
Q Consensus 329 p~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~ 385 (547)
|++++||+|++|.++.+|+||+||+||.|++|.+++|+++.|..+...+.+.+....
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999888888888877776553
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-57 Score=452.23 Aligned_cols=362 Identities=36% Similarity=0.570 Sum_probs=311.4
Q ss_pred cCCccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCC--CCCCCEEE
Q 008956 18 MSFDATGFPPELLREVHN-AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND--PRLGPTVL 94 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~--~~~~~~vL 94 (547)
..|..++|++-++..|.. +++..||.+|.++||.+++++|++|.++||||||++|++|++..+.....+ ...|+-+|
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 469999999999999975 499999999999999999999999999999999999999999998775432 33478999
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCce-EEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhc-CCcCCCCeeEEEEec
Q 008956 95 VLSPTRELATQIQDEAVKFGKSSRI-SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM-RRISLNQVSYLVLDE 172 (547)
Q Consensus 95 il~Ptr~L~~Q~~~~~~~~~~~~~i-~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~-~~~~l~~~~~lVlDE 172 (547)
||+||||||.|+++.+.++.+.... ....+.||..+.....+++.|++|+|+||++|.|.|.+ ..+.++++.+|||||
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence 9999999999999999999877543 44567888888888889999999999999999999875 467788999999999
Q ss_pred ccccccCCcHHHHHHHHHhCC-------------CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcc-----------
Q 008956 173 ADRMLDMGFEPQIRKIVKEVP-------------ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNV----------- 228 (547)
Q Consensus 173 aH~ll~~g~~~~i~~i~~~l~-------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~----------- 228 (547)
||+++++||+..|..|++.+. ...|.+++|||+...+..++...+.+|..|.+...
T Consensus 296 aDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~ 375 (708)
T KOG0348|consen 296 ADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAV 375 (708)
T ss_pred hhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhh
Confidence 999999999999999987762 24689999999999999999999999988873211
Q ss_pred ------------cccccccceeEEEEEcCccchHHHHHHHHHhc---CCCCeEEEEcCChHHHHHHHHHHhc--------
Q 008956 229 ------------DELAANKAITQHIEVLAPMDKHRRLEQILRSQ---EPGSKIIVFCSTKKMCDQLARNLTR-------- 285 (547)
Q Consensus 229 ------------~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~k~IVF~~s~~~~~~l~~~L~~-------- 285 (547)
+....+..+.|++.++.+.-..-.|..+|... .+..++|||+.+.+.++.-++.|..
T Consensus 376 ~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~ 455 (708)
T KOG0348|consen 376 QEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG 455 (708)
T ss_pred hhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccccc
Confidence 11233445567777777776666666665532 4456999999999999988887753
Q ss_pred ---------------ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhh
Q 008956 286 ---------------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 350 (547)
Q Consensus 286 ---------------~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQri 350 (547)
...+..+||.|+|++|..+++.|...+-.||+||||+++|||+|+|++||+||.|.++.+|+||+
T Consensus 456 ~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRv 535 (708)
T KOG0348|consen 456 SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRV 535 (708)
T ss_pred ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHh
Confidence 12478899999999999999999998888999999999999999999999999999999999999
Q ss_pred ccccCCCCceEEEEEecCCChHHHHHHHH
Q 008956 351 GRTGRAGATGVAYTFFGDQDSRYASDLIK 379 (547)
Q Consensus 351 GR~gR~g~~g~~~~l~~~~~~~~~~~l~~ 379 (547)
|||.|+|.+|.+++|+.+.+..+.+.+..
T Consensus 536 GRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 536 GRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred hhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 99999999999999999999887766644
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-56 Score=434.10 Aligned_cols=364 Identities=30% Similarity=0.477 Sum_probs=321.5
Q ss_pred cCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccC--CCCCCCEEEE
Q 008956 18 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN--DPRLGPTVLV 95 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~--~~~~~~~vLi 95 (547)
..|++++|++.+++++.+.||.+||-+|..+||.+++++|+++.|.||||||.+|++|++..+..... ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 58999999999999999999999999999999999999999999999999999999999998876443 3455889999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCc--eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCC-cCCCCeeEEEEec
Q 008956 96 LSPTRELATQIQDEAVKFGKSSR--ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR-ISLNQVSYLVLDE 172 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~~~--i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~-~~l~~~~~lVlDE 172 (547)
|+||+||++|++..+.++...+. +++..+..+.........+...++|+|+||.+|+.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999888765432 44444554444444446677789999999999999998776 6678899999999
Q ss_pred ccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHH
Q 008956 173 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR 252 (547)
Q Consensus 173 aH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 252 (547)
||.++..||+..+.++...+|+..|.++||||+..++..+-..++.+|+.+.+...+ ......+.|++..+.+.+|...
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e-l~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE-LPNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecccc-CCCcccceEEEEEeccchhHHH
Confidence 999999999999999999999999999999999999999999999999998887654 4456678888888889999999
Q ss_pred HHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccc----------
Q 008956 253 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV---------- 321 (547)
Q Consensus 253 l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~---------- 321 (547)
+..+++..--.+++|||+|++..|..+.-.|++- ++.+++++.|+...|..++++|+.|-++|+||||.
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 9999987766689999999999999999888753 77899999999999999999999999999999992
Q ss_pred -------------------------cccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHH
Q 008956 322 -------------------------AARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASD 376 (547)
Q Consensus 322 -------------------------~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~ 376 (547)
.++|||+.+|..|||||+|.++..|+||+|||+|++++|.+++|+.+.+......
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 6899999999999999999999999999999999999999999999887765555
Q ss_pred HHHHHH
Q 008956 377 LIKLLE 382 (547)
Q Consensus 377 l~~~l~ 382 (547)
+...+.
T Consensus 418 le~~~~ 423 (569)
T KOG0346|consen 418 LESILK 423 (569)
T ss_pred HHHHHh
Confidence 554444
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.7e-54 Score=454.93 Aligned_cols=367 Identities=30% Similarity=0.577 Sum_probs=317.1
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEE
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 95 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLi 95 (547)
...+|+++++++.+++++.+.||.+|+|+|.++|+.++++++++++||||+|||++|++|++..+... ..+.++||
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~----~~~~~~li 101 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD----LNACQALI 101 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC----CCCceEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999876532 12568999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc
Q 008956 96 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 175 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ 175 (547)
|+|+++|+.|+.+.+..++....+.+...+|+......+..+..+++|+|+||++|.+.+....+.+.++++|||||||+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999999988777888888888887777778888899999999999999988888899999999999999
Q ss_pred cccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCc-cchHHHHH
Q 008956 176 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP-MDKHRRLE 254 (547)
Q Consensus 176 ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~ 254 (547)
+++.+|...+..++..++...|++++|||+|..+..+...++.++..+.+..... ....+.+.+..... ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL--TLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc--ccCCceEEEEecChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988887765543221 22234444444433 33455556
Q ss_pred HHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccE
Q 008956 255 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRV 333 (547)
Q Consensus 255 ~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~ 333 (547)
.++.... ..++||||++++.++.+++.|... +.+..+|+++++.+|..+++.|++|+++|||||+++++|||+|++++
T Consensus 260 ~~~~~~~-~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETLT-ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhcC-CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 6555443 468999999999999999999865 88999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhccccc
Q 008956 334 VVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVP 389 (547)
Q Consensus 334 VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~ 389 (547)
||++++|.+..+|+||+||+||.|++|.|++|+++.+......+.+.+....+..+
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999999999999998888777777666655444443
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-55 Score=438.50 Aligned_cols=365 Identities=33% Similarity=0.517 Sum_probs=299.9
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHhhhccC---------
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRN--------- 85 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~--------- 85 (547)
.+..|..+.||.+++++|..+||..||++|..+||++..+ .|+|..|.||||||+||-||++..+....+
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 5567999999999999999999999999999999999999 799999999999999999999995443221
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCc---CC
Q 008956 86 DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI---SL 162 (547)
Q Consensus 86 ~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~---~l 162 (547)
.....+..||++||||||.|+.+.+......++|++..++||.....+.+.+...++|+|+||++|..++..... .+
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 111223599999999999999999999999999999999999999999888888999999999999999875543 46
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCC-----CCceEEEEeccCcHH---------------------HHHHHHHh
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVP-----ARRQTLMYTATWPRE---------------------VRKIAADL 216 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~-----~~~q~l~~SAT~~~~---------------------~~~~~~~~ 216 (547)
.++.+|||||||||+..|+...+..|++.+. ..+|++.||||+.-. ++.++...
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 7899999999999999998888888887765 358999999997622 11222221
Q ss_pred --cCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEc
Q 008956 217 --LVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIH 293 (547)
Q Consensus 217 --l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ih 293 (547)
...|..+++.... .....+......+...+|.-.|..+|..+ + +++|||||++..+..|+-+|+.. ++...+|
T Consensus 419 g~~~kpkiiD~t~q~--~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-P-GrTlVF~NsId~vKRLt~~L~~L~i~p~~LH 494 (731)
T KOG0347|consen 419 GFRGKPKIIDLTPQS--ATASTLTESLIECPPLEKDLYLYYFLTRY-P-GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLH 494 (731)
T ss_pred CccCCCeeEecCcch--hHHHHHHHHhhcCCccccceeEEEEEeec-C-CceEEEechHHHHHHHHHHHhhcCCCCchhh
Confidence 1234444443222 12222222223334444444444444433 2 59999999999999999999864 8899999
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHH
Q 008956 294 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRY 373 (547)
Q Consensus 294 g~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~ 373 (547)
+.|.|.+|-..++.|++....|||||||++||||||+|.|||||..|.+.+.|+||.|||+|++..|..++|+.+.+...
T Consensus 495 A~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 495 ASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHh
Q 008956 374 ASDLIKLLEGA 384 (547)
Q Consensus 374 ~~~l~~~l~~~ 384 (547)
+..+.+-|+..
T Consensus 575 ~~KL~ktL~k~ 585 (731)
T KOG0347|consen 575 LKKLCKTLKKK 585 (731)
T ss_pred HHHHHHHHhhc
Confidence 88887777644
No 30
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-52 Score=402.14 Aligned_cols=370 Identities=34% Similarity=0.576 Sum_probs=334.0
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEE
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 95 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLi 95 (547)
-+.+|++++|+++|++.++..||.+|+.+|+.||..+..|.|+++++++|+|||.+|+++++..+.. +.....+|+
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~----~~ke~qali 99 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM----SVKETQALI 99 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc----chHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999888633 222458999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhh-CCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccc
Q 008956 96 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID-RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 174 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH 174 (547)
++|+++|+.|+.+....++...++++....|+.........+. ..++|+|+||+++.+.+....+....++++|+||||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 9999999999999999999999999998888888775555444 468999999999999999888888889999999999
Q ss_pred ccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHH
Q 008956 175 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 254 (547)
Q Consensus 175 ~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 254 (547)
.|+..+|..+|..|++.+|.+.|++++|||.|.++..+.+.++.+|..+.+.... ...+.+.|++..+...+|...|.
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~--ltl~gikq~~i~v~k~~k~~~l~ 257 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE--LTLEGIKQFYINVEKEEKLDTLC 257 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh--hhhhheeeeeeeccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999887655 23556888888888888999998
Q ss_pred HHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccE
Q 008956 255 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRV 333 (547)
Q Consensus 255 ~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~ 333 (547)
++.+ .-...+||||+.+.++.+...|... +.+.++|++|.+.+|+.++..|+.|..+|||+|+.+++|+|+..+..
T Consensus 258 dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~sl 334 (397)
T KOG0327|consen 258 DLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSL 334 (397)
T ss_pred HHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcce
Confidence 8888 3357899999999999999999754 88999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHH
Q 008956 334 VVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRD 394 (547)
Q Consensus 334 VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~ 394 (547)
||+|++|...++|+||+||+||.|.+|.++.++.+.+.....++.++..-...++|....+
T Consensus 335 vinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 335 VVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred eeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhh
Confidence 9999999999999999999999999999999999999999888888876666666655443
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-51 Score=394.93 Aligned_cols=374 Identities=30% Similarity=0.529 Sum_probs=314.2
Q ss_pred CCCC-CCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHhhhccCCC
Q 008956 11 DEVP-PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDP 87 (547)
Q Consensus 11 ~~~p-~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~ 87 (547)
.+.| -...+|+++.|.+++++.|+.++|..|+.+|+.++|.++.. +++|.++..|+|||.||.+.++..+.....
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~-- 159 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVV-- 159 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcccc--
Confidence 3444 45678999999999999999999999999999999999986 789999999999999999998887654322
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCC--ChhhHHHhhCCCcEEEECcHHHHHHHhc-CCcCCCC
Q 008956 88 RLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAP--KGPQLKDIDRGVDIVVATPGRLNDILEM-RRISLNQ 164 (547)
Q Consensus 88 ~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~--~~~~~~~~~~~~~IlV~Tp~~L~~~l~~-~~~~l~~ 164 (547)
-|.++-|+||++||.|+.+.+.+.++...+.....+-+.. +...+ ..+|+|.||+.+.++..+ ..+.+..
T Consensus 160 --~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i-----~eqIviGTPGtv~Dlm~klk~id~~k 232 (477)
T KOG0332|consen 160 --VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKL-----TEQIVIGTPGTVLDLMLKLKCIDLEK 232 (477)
T ss_pred --CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcc-----hhheeeCCCccHHHHHHHHHhhChhh
Confidence 4678888999999999999999999988777766655441 11111 258999999999999887 7888999
Q ss_pred eeEEEEecccccccC-CcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEE
Q 008956 165 VSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEV 243 (547)
Q Consensus 165 ~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~ 243 (547)
+.++|+||||.|++. ||..+-..|+..+|+..|+|+||||+...+..++...+.++..+.+...+ +.. ..+.|.+..
T Consensus 233 ikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~ee-l~L-~~IkQlyv~ 310 (477)
T KOG0332|consen 233 IKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREE-LAL-DNIKQLYVL 310 (477)
T ss_pred ceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhh-ccc-cchhhheee
Confidence 999999999999975 58888889999999999999999999999999999999999888776544 222 345555544
Q ss_pred -cCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccc
Q 008956 244 -LAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV 321 (547)
Q Consensus 244 -~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~ 321 (547)
....+|...|.++.....- ...||||.|++.+.+++..|... +.+.++||+|+..+|..+++.|+.|..+|||+|++
T Consensus 311 C~~~~~K~~~l~~lyg~~ti-gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV 389 (477)
T KOG0332|consen 311 CACRDDKYQALVNLYGLLTI-GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNV 389 (477)
T ss_pred ccchhhHHHHHHHHHhhhhh-hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEech
Confidence 4556788888887766655 47799999999999999999865 89999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEcCCCC------ChhhhHhhhccccCCCCceEEEEEecCCC-hHHHHHHHHHHHHhc-ccccHHHH
Q 008956 322 AARGLDIKDIRVVVNYDFPT------GVEDYVHRIGRTGRAGATGVAYTFFGDQD-SRYASDLIKLLEGAK-QQVPRELR 393 (547)
Q Consensus 322 ~~~GiDip~v~~VI~~d~p~------s~~~yiQriGR~gR~g~~g~~~~l~~~~~-~~~~~~l~~~l~~~~-~~v~~~l~ 393 (547)
++||||++.|++|||||+|. +++.|+||||||||.|++|.++.|++..+ ....+.|.+.++... ...|..+.
T Consensus 390 ~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~ 469 (477)
T KOG0332|consen 390 CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLD 469 (477)
T ss_pred hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHH
Confidence 99999999999999999995 78899999999999999999999998654 455566777765443 33454444
Q ss_pred HHH
Q 008956 394 DMA 396 (547)
Q Consensus 394 ~l~ 396 (547)
++.
T Consensus 470 E~e 472 (477)
T KOG0332|consen 470 ELE 472 (477)
T ss_pred HHH
Confidence 443
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-52 Score=406.77 Aligned_cols=359 Identities=36% Similarity=0.581 Sum_probs=333.1
Q ss_pred cCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 18 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
-.|+.++|+..+++++.+.||..|||+|+++||.+|++++++..+-||||||.||++|+++++.... ..+-++|+++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---~~g~Ralils 97 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---QTGLRALILS 97 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---ccccceeecc
Confidence 4699999999999999999999999999999999999999999999999999999999999988755 2367999999
Q ss_pred CcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 98 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
||++|+.|..+..+.++..+++.+.+++|+....+++..+..+.|||++||++++.+...-.+.++.+.||||||||++.
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlf 177 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLF 177 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999988777667889999999999999999
Q ss_pred cCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHH
Q 008956 178 DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL 257 (547)
Q Consensus 178 ~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 257 (547)
.|||.+++.+++..++..+|+++||||+|+.+.++++.-+.+|..+.+.... ..++.....+..+.+.+|...|..++
T Consensus 178 emgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet--kise~lk~~f~~~~~a~K~aaLl~il 255 (529)
T KOG0337|consen 178 EMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET--KISELLKVRFFRVRKAEKEAALLSIL 255 (529)
T ss_pred hhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh--hcchhhhhheeeeccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865543 34445666778888999999999999
Q ss_pred HhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE
Q 008956 258 RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN 336 (547)
Q Consensus 258 ~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~ 336 (547)
.....+.+++|||.|+.+++.+...|.+. +.+..+.+.+++..|...+.+|+.++..+||.||++++|+|||-.+.|||
T Consensus 256 ~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin 335 (529)
T KOG0337|consen 256 GGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN 335 (529)
T ss_pred hccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc
Confidence 98877789999999999999999999865 88899999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHH
Q 008956 337 YDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLL 381 (547)
Q Consensus 337 ~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l 381 (547)
||+|.+..-|+||+||+.|+|..|.+|.|+...+..+..++.-.+
T Consensus 336 yd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lfl 380 (529)
T KOG0337|consen 336 YDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFL 380 (529)
T ss_pred ccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhc
Confidence 999999999999999999999999999999999888877775544
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.7e-50 Score=444.27 Aligned_cols=355 Identities=20% Similarity=0.247 Sum_probs=273.8
Q ss_pred CCCCCccCCccC--CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCC
Q 008956 12 EVPPPFMSFDAT--GFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL 89 (547)
Q Consensus 12 ~~p~~~~~f~~~--~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~ 89 (547)
++|+....+..+ .|++.+.+.|..+||.+||++|.++|+.+++|+|+++++|||||||++|++|++..+... .
T Consensus 6 ~~p~~~a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-----~ 80 (742)
T TIGR03817 6 HLPARAGRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-----P 80 (742)
T ss_pred ecCCCCcccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-----C
Confidence 445444445444 389999999999999999999999999999999999999999999999999999988652 2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC----CcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR----RISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~----~~~l~~~ 165 (547)
+.++|||+||++|+.|+.+.++++. ..++++..+.|+.. ..+...+...++|+|+||++|...+... ...++++
T Consensus 81 ~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l 158 (742)
T TIGR03817 81 RATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRL 158 (742)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcC
Confidence 4699999999999999999999987 44678777777665 4444566677999999999997533211 1237889
Q ss_pred eEEEEecccccccCCcHHHHHHHHH-------hCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCccccccccccee
Q 008956 166 SYLVLDEADRMLDMGFEPQIRKIVK-------EVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAIT 238 (547)
Q Consensus 166 ~~lVlDEaH~ll~~g~~~~i~~i~~-------~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~ 238 (547)
++|||||||+|.+. |...+..++. .++..+|++++|||+++... ++..++..+..+ +.... .... ..
T Consensus 159 ~~vViDEah~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~-~~~~--~~ 232 (742)
T TIGR03817 159 RYVVIDECHSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG-SPRG--AR 232 (742)
T ss_pred CEEEEeChhhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC-CCcC--ce
Confidence 99999999999774 6665444433 34567899999999987754 566777666543 32211 1111 11
Q ss_pred EEEEEcC-----------------ccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc---------cceEEE
Q 008956 239 QHIEVLA-----------------PMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ---------FGAAAI 292 (547)
Q Consensus 239 ~~~~~~~-----------------~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~---------~~~~~i 292 (547)
+...+.. ..++...+..+++ .+.++||||+|++.++.++..|++. ..+..+
T Consensus 233 ~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~ 309 (742)
T TIGR03817 233 TVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAY 309 (742)
T ss_pred EEEEecCCccccccccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhe
Confidence 1111111 1123344444444 3579999999999999999988652 467889
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCC--C
Q 008956 293 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ--D 370 (547)
Q Consensus 293 hg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~--~ 370 (547)
|+++++++|..++++|++|++++||||+++++|||||++++||++++|.+.++|+||+|||||.|+.|.++++.... |
T Consensus 310 hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d 389 (742)
T TIGR03817 310 RAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLD 389 (742)
T ss_pred ecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888633 3
Q ss_pred hHHHHHHHHHHH
Q 008956 371 SRYASDLIKLLE 382 (547)
Q Consensus 371 ~~~~~~l~~~l~ 382 (547)
..+.....+.++
T Consensus 390 ~~~~~~~~~~~~ 401 (742)
T TIGR03817 390 TYLVHHPEALFD 401 (742)
T ss_pred HHHHhCHHHHhc
Confidence 334444444443
No 34
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-50 Score=410.09 Aligned_cols=391 Identities=34% Similarity=0.531 Sum_probs=334.6
Q ss_pred EEEEEecCCCCCCccCCcc----CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHH
Q 008956 4 LLLIFQGDEVPPPFMSFDA----TGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH 79 (547)
Q Consensus 4 ~~~~~~g~~~p~~~~~f~~----~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~ 79 (547)
+++.++|.++|+|+.+|.+ ..+...+++++...+|..|+|+|++++|.+++.+++++|||||+|||++|++|++.+
T Consensus 118 ~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~ 197 (593)
T KOG0344|consen 118 NKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQH 197 (593)
T ss_pred ceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHH
Confidence 4678999999999999987 567899999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC-CCCCCCEEEEEcCcHHHHHHHHHHHHHhc--cCCceEEEEecCCCC-ChhhHHHhhCCCcEEEECcHHHHHHH
Q 008956 80 LKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFG--KSSRISCTCLYGGAP-KGPQLKDIDRGVDIVVATPGRLNDIL 155 (547)
Q Consensus 80 l~~~~~-~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~--~~~~i~~~~~~g~~~-~~~~~~~~~~~~~IlV~Tp~~L~~~l 155 (547)
+..... ....+-+++|+.||++|+.|++.++.++. ......++....... ...........++|+|.||-++..++
T Consensus 198 L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~ 277 (593)
T KOG0344|consen 198 LKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLL 277 (593)
T ss_pred HHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHh
Confidence 877542 12236789999999999999999999998 444444433322211 11111222335899999999999998
Q ss_pred hcCC--cCCCCeeEEEEecccccccC-CcHHHHHHHHHhCCC-CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCccccc
Q 008956 156 EMRR--ISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPA-RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDEL 231 (547)
Q Consensus 156 ~~~~--~~l~~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~~-~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~ 231 (547)
.... +++..+.++|+||||++.+. .|..++..|+..+.. ...+-+||||++..+++++...+.+...+.++..+..
T Consensus 278 ~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa 357 (593)
T KOG0344|consen 278 GLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA 357 (593)
T ss_pred cCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH
Confidence 8765 78899999999999999988 889999999888765 4566789999999999999999999999888776543
Q ss_pred ccccceeEE-EEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHh--cccceEEEcCCCCHHHHHHHHHHh
Q 008956 232 AANKAITQH-IEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT--RQFGAAAIHGDKSQSERDYVLNQF 308 (547)
Q Consensus 232 ~~~~~i~~~-~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~--~~~~~~~ihg~~~~~~R~~~l~~F 308 (547)
...+.|. +.......|...+.+++..-.+ -++|||+.+++.|..|...|. ..+.+.++|+..++.+|+.+++.|
T Consensus 358 --~~~V~QelvF~gse~~K~lA~rq~v~~g~~-PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~F 434 (593)
T KOG0344|consen 358 --NETVDQELVFCGSEKGKLLALRQLVASGFK-PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERF 434 (593)
T ss_pred --hhhhhhhheeeecchhHHHHHHHHHhccCC-CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHH
Confidence 3334444 4445566777788888876543 599999999999999999994 347899999999999999999999
Q ss_pred hcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccc
Q 008956 309 RAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQV 388 (547)
Q Consensus 309 ~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v 388 (547)
+.|++.|||||+++++|+|+.+++.|||||+|.+...|+|||||+||+|+.|.+|+||++.+.++...+...++....+|
T Consensus 435 R~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~ev 514 (593)
T KOG0344|consen 435 RIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEV 514 (593)
T ss_pred hccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHH
Q 008956 389 PRELRDMAS 397 (547)
Q Consensus 389 ~~~l~~l~~ 397 (547)
|.++..+..
T Consensus 515 pe~~m~~~k 523 (593)
T KOG0344|consen 515 PEKIMGIKK 523 (593)
T ss_pred hHHHHhhhh
Confidence 999887764
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7e-50 Score=405.84 Aligned_cols=354 Identities=31% Similarity=0.503 Sum_probs=313.8
Q ss_pred cCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCC
Q 008956 10 GDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL 89 (547)
Q Consensus 10 g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~ 89 (547)
++..|.....|+++-|-.+++..|+.++|..||++|..|||.++.+-|+||+|..|+|||++|.+.++..+.... .
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~----~ 92 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS----S 92 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc----C
Confidence 445567778899999999999999999999999999999999999999999999999999999888777664422 2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccC-CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEE
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYL 168 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~l 168 (547)
.+..+||+|||||+.|+.+.+.+++.. .+.+|.+.+||+.....+.++. .|+|+|+||+++..+++.+.++...+.++
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlf 171 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLF 171 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEE
Confidence 568999999999999999999999874 7899999999998777766654 47899999999999999999999999999
Q ss_pred EEecccccccC-CcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCcc
Q 008956 169 VLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPM 247 (547)
Q Consensus 169 VlDEaH~ll~~-g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~ 247 (547)
||||||.|++. .|...|..|++.+|..+|++++|||.|..+.+.+..+|.+|..+.....+... ..+.|++......
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L--~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQL--FGIKQYVVAKCSP 249 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCcee--echhheeeeccCC
Confidence 99999999984 48999999999999999999999999999999999999999999887665433 3466776655443
Q ss_pred --------chHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEE
Q 008956 248 --------DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVA 318 (547)
Q Consensus 248 --------~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVa 318 (547)
.|...|-++++... -..+||||+....|+.++..|+.. ++|.+|.|.|+|.+|..+++.++.-.++|||+
T Consensus 250 nnsveemrlklq~L~~vf~~ip-y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSIP-YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhCc-hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 24555666665544 358999999999999999999865 99999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 319 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 319 T~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
||..++|||-++++.|||+|.|.+.++|.||||||||.|..|.+++|+....+
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999986554
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2e-47 Score=420.62 Aligned_cols=336 Identities=22% Similarity=0.325 Sum_probs=258.1
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHH
Q 008956 23 TGFPPELLREVHN-AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE 101 (547)
Q Consensus 23 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~ 101 (547)
++....+...+.. .||..++|+|.++|++++.++|+|+++|||+|||++|++|++.. ...+|||+|+++
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----------~GiTLVISPLiS 511 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----------PGITLVISPLVS 511 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----------CCcEEEEeCHHH
Confidence 3444555555554 39999999999999999999999999999999999999998753 348999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhh------CCCcEEEECcHHHHH---HHhc--CCcCCCCeeEEEE
Q 008956 102 LATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID------RGVDIVVATPGRLND---ILEM--RRISLNQVSYLVL 170 (547)
Q Consensus 102 L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~------~~~~IlV~Tp~~L~~---~l~~--~~~~l~~~~~lVl 170 (547)
|+.++...+... ++....+.++....++...+. ..++||++||++|.. ++.. .......+.+|||
T Consensus 512 LmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVI 587 (1195)
T PLN03137 512 LIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVI 587 (1195)
T ss_pred HHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceecc
Confidence 998666665543 577788888777655543332 358999999999852 1211 1112345889999
Q ss_pred ecccccccCC--cHHHHHHH--HHhCCCCceEEEEeccCcHHHHHHHHHhcCCCe-EEEeCcccccccccceeEEEEEcC
Q 008956 171 DEADRMLDMG--FEPQIRKI--VKEVPARRQTLMYTATWPREVRKIAADLLVNPV-QVNIGNVDELAANKAITQHIEVLA 245 (547)
Q Consensus 171 DEaH~ll~~g--~~~~i~~i--~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~-~i~i~~~~~~~~~~~i~~~~~~~~ 245 (547)
||||++++|| |.+.+..+ +....+..+++++|||++..+.+.+...+.... .+...... ..++ .+.+..
T Consensus 588 DEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~----RpNL--~y~Vv~ 661 (1195)
T PLN03137 588 DEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN----RPNL--WYSVVP 661 (1195)
T ss_pred CcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC----ccce--EEEEec
Confidence 9999999998 77776653 333334678999999999998876665554222 12111111 1112 222222
Q ss_pred ccc-hHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccc
Q 008956 246 PMD-KHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 323 (547)
Q Consensus 246 ~~~-k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~ 323 (547)
... ....+..++.....+...||||.+++.|+.+++.|.+. +.+..+|++|++.+|..+++.|..|+++|||||++++
T Consensus 662 k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG 741 (1195)
T PLN03137 662 KTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG 741 (1195)
T ss_pred cchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh
Confidence 222 23455666655544568999999999999999999864 8999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHH
Q 008956 324 RGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 378 (547)
Q Consensus 324 ~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~ 378 (547)
+|||+|+|++||||++|.+++.|+|++|||||.|.++.|++||+..|......++
T Consensus 742 MGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 742 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred cCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877665555554
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.9e-47 Score=404.75 Aligned_cols=324 Identities=25% Similarity=0.374 Sum_probs=252.9
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 36 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 36 ~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
.||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. +..+|||+|+++|+.|+.+.+..+
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----------~~~~lVi~P~~~L~~dq~~~l~~~-- 74 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----------DGITLVISPLISLMEDQVLQLKAS-- 74 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----------CCcEEEEecHHHHHHHHHHHHHHc--
Confidence 49999999999999999999999999999999999999998752 347999999999999999988765
Q ss_pred CCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHH-hcCCc-CCCCeeEEEEecccccccCC--cHHHHHH
Q 008956 116 SSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDIL-EMRRI-SLNQVSYLVLDEADRMLDMG--FEPQIRK 187 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l-~~~~~-~l~~~~~lVlDEaH~ll~~g--~~~~i~~ 187 (547)
++.+..+.++....+. +..+.. ..+|+++||+++.... ....+ ...++++|||||||++++|+ |.+.+..
T Consensus 75 --gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 75 --GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 3556666665544322 233333 4899999999975322 11112 46789999999999999987 5666554
Q ss_pred H---HHhCCCCceEEEEeccCcHHHHHHHHHhcC--CCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCC
Q 008956 188 I---VKEVPARRQTLMYTATWPREVRKIAADLLV--NPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEP 262 (547)
Q Consensus 188 i---~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~ 262 (547)
+ ...+ +..+++++|||+++.+...+...+. ++..+ ....+ ..++...+.. ........+..++.....
T Consensus 153 l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~-~~s~~----r~nl~~~v~~-~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 153 LGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIF-CTSFD----RPNLYYEVRR-KTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEE-eCCCC----CCCcEEEEEe-CCccHHHHHHHHHHHhcC
Confidence 3 3344 4678999999999988766555542 33332 22221 1112222211 122344556666665556
Q ss_pred CCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCC
Q 008956 263 GSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT 341 (547)
Q Consensus 263 ~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~ 341 (547)
+.++||||+++++++.+++.|++. +.+..+|++|++.+|..+++.|++|+++|||||+++++|||+|++++||++++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 677899999999999999999864 8899999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHH
Q 008956 342 GVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKL 380 (547)
Q Consensus 342 s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~ 380 (547)
++++|+||+||+||.|.++.|++|++..|....+.++..
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 999999999999999999999999998887766666543
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-48 Score=382.10 Aligned_cols=361 Identities=29% Similarity=0.443 Sum_probs=289.0
Q ss_pred cCCccCCCCHHHHH----------HHHHCCCCCCcHHHHHHHHHHhC---------CCcEEEEcCCCchHHHHHHHHHHH
Q 008956 18 MSFDATGFPPELLR----------EVHNAGFSSPTPIQAQSWPIALQ---------SRDIVAIAKTGSGKTLGYLLPGFI 78 (547)
Q Consensus 18 ~~f~~~~l~~~l~~----------~l~~~g~~~~~~~Q~~~i~~il~---------g~~vlv~a~TGsGKT~~~l~~~l~ 78 (547)
..|..+++.+.... .+.+++++..+|+|..++|+++. .+|++|.||||||||++|.+|++.
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 34555665555444 48899999999999999999964 479999999999999999999999
Q ss_pred HhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhC-C----CcEEEECcHHHHH
Q 008956 79 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-G----VDIVVATPGRLND 153 (547)
Q Consensus 79 ~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~----~~IlV~Tp~~L~~ 153 (547)
.+.....+ --++|||+||++|+.|+++.|..+....++.++.+.|.........++.. . .+|+|+||++|.+
T Consensus 207 ~L~~R~v~---~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVD 283 (620)
T KOG0350|consen 207 LLSSRPVK---RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVD 283 (620)
T ss_pred HHccCCcc---ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHH
Confidence 88763322 35899999999999999999999999999998888887776655555543 2 4899999999999
Q ss_pred HHh-cCCcCCCCeeEEEEecccccccCCcHHHHHHHHHh----------------------------------CCCCceE
Q 008956 154 ILE-MRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE----------------------------------VPARRQT 198 (547)
Q Consensus 154 ~l~-~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~----------------------------------l~~~~q~ 198 (547)
++. ...++++++.|+||||||||++..|..-+..++.. +.+..+.
T Consensus 284 Hl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~k 363 (620)
T KOG0350|consen 284 HLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWK 363 (620)
T ss_pred hccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHh
Confidence 998 67899999999999999999975443322222111 1222346
Q ss_pred EEEeccCcHHHHHHHHHhcCCCeEEEeCc--ccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHH
Q 008956 199 LMYTATWPREVRKIAADLLVNPVQVNIGN--VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMC 276 (547)
Q Consensus 199 l~~SAT~~~~~~~~~~~~l~~~~~i~i~~--~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~ 276 (547)
|.+|||+...-..+...-+..|..+.+.. ...+.....+......+....|...+..++.... ..++|+|+++...+
T Consensus 364 L~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k-~~r~lcf~~S~~sa 442 (620)
T KOG0350|consen 364 LVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK-LNRTLCFVNSVSSA 442 (620)
T ss_pred hhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhh-cceEEEEecchHHH
Confidence 78888887666666666666664444432 2233444455555666666677777777777654 46999999999999
Q ss_pred HHHHHHHhc-----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhc
Q 008956 277 DQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIG 351 (547)
Q Consensus 277 ~~l~~~L~~-----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriG 351 (547)
..++..|+- .+.+..+.|.++...|...++.|..|.++||||+|+++||||+.+++.|||||+|.+...|+||+|
T Consensus 443 ~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~G 522 (620)
T KOG0350|consen 443 NRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAG 522 (620)
T ss_pred HHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhc
Confidence 999998872 255667899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEEEecCCChHHHHHHHHHHH
Q 008956 352 RTGRAGATGVAYTFFGDQDSRYASDLIKLLE 382 (547)
Q Consensus 352 R~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~ 382 (547)
||+|+|+.|.||+++...+.....++++...
T Consensus 523 RTARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 523 RTARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred ccccccCCceEEEeeccccchHHHHHHHHhc
Confidence 9999999999999999998887777776654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.3e-45 Score=400.00 Aligned_cols=321 Identities=24% Similarity=0.388 Sum_probs=250.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 36 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 36 ~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
.||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+.+.+..++
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~----------~g~tlVisPl~sL~~dqv~~l~~~g- 89 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL----------DGLTLVVSPLISLMKDQVDQLLANG- 89 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----------CCCEEEEecHHHHHHHHHHHHHHcC-
Confidence 49999999999999999999999999999999999999998753 3479999999999999999888753
Q ss_pred CCceEEEEecCCCCChhhH---HHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC--cHHHHHHH-
Q 008956 116 SSRISCTCLYGGAPKGPQL---KDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG--FEPQIRKI- 188 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g--~~~~i~~i- 188 (547)
+.+.++.+.....+.. ..+.. ..+++++||++|........+...++++|||||||++.+|+ |.+.+..+
T Consensus 90 ---i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~ 166 (607)
T PRK11057 90 ---VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALG 166 (607)
T ss_pred ---CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHH
Confidence 5556666655544332 22333 47899999999874222223445578999999999999987 66555443
Q ss_pred --HHhCCCCceEEEEeccCcHHHHHHHHHhcC-CCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCe
Q 008956 189 --VKEVPARRQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSK 265 (547)
Q Consensus 189 --~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k 265 (547)
...+ +..+++++|||++..+...+...+. ....+.+...+. .++ .+.......+...+...+... .+.+
T Consensus 167 ~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r----~nl--~~~v~~~~~~~~~l~~~l~~~-~~~~ 238 (607)
T PRK11057 167 QLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR----PNI--RYTLVEKFKPLDQLMRYVQEQ-RGKS 238 (607)
T ss_pred HHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCC----Ccc--eeeeeeccchHHHHHHHHHhc-CCCC
Confidence 3444 4678999999999887655444432 222232322221 112 122233334445555555543 4578
Q ss_pred EEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChh
Q 008956 266 IIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVE 344 (547)
Q Consensus 266 ~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~ 344 (547)
+||||+++++|+.+++.|.+. +.+..+|++|++++|..+++.|+.|+++|||||+++++|||+|++++||+|++|.+.+
T Consensus 239 ~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~ 318 (607)
T PRK11057 239 GIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIE 318 (607)
T ss_pred EEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHH
Confidence 999999999999999999865 8899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhccccCCCCceEEEEEecCCChHHHHHHH
Q 008956 345 DYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 378 (547)
Q Consensus 345 ~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~ 378 (547)
+|+|++||+||.|.++.|++|++..|......++
T Consensus 319 ~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 319 SYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred HHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999988766555444
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4e-45 Score=408.91 Aligned_cols=334 Identities=24% Similarity=0.329 Sum_probs=258.1
Q ss_pred CCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 19 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 19 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
.|++++||+.+++.+.+.||.+|+|+|.++++. +++++|++++||||+|||++|++|++..+.. +.++|||+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-------~~kal~i~ 74 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-------GGKALYIV 74 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-------CCcEEEEe
Confidence 688999999999999999999999999999998 7789999999999999999999999988753 56899999
Q ss_pred CcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 98 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
|+++|+.|+++.++++.. .++++..++|+...... ....++|+|+||+++..++.+....+.++++||+||+|.+.
T Consensus 75 P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 75 PLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLID 150 (737)
T ss_pred ChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccC
Confidence 999999999999998653 46888888887654332 22457999999999998888766667899999999999999
Q ss_pred cCCcHHHHHHHHHhC---CCCceEEEEeccCcHHHHHHHHHhcCC--------CeEEEeCc--ccccccccceeEEEEEc
Q 008956 178 DMGFEPQIRKIVKEV---PARRQTLMYTATWPREVRKIAADLLVN--------PVQVNIGN--VDELAANKAITQHIEVL 244 (547)
Q Consensus 178 ~~g~~~~i~~i~~~l---~~~~q~l~~SAT~~~~~~~~~~~~l~~--------~~~i~i~~--~~~~~~~~~i~~~~~~~ 244 (547)
+.++...+..++..+ ....|++++|||+++ ..++. .++.. |..+.... ...... .......
T Consensus 151 d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~~~----~~~~~~~ 224 (737)
T PRK02362 151 SANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELA-DWLDAELVDSEWRPIDLREGVFYGGAIHF----DDSQREV 224 (737)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHH-HHhCCCcccCCCCCCCCeeeEecCCeecc----ccccccC
Confidence 888888877766554 467899999999974 22332 23221 11111000 000000 0000001
Q ss_pred CccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-------------------------------------c
Q 008956 245 APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-------------------------------------F 287 (547)
Q Consensus 245 ~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-------------------------------------~ 287 (547)
....+...+..++.....+.++||||++++.|+.+++.|... .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~ 304 (737)
T PRK02362 225 EVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAK 304 (737)
T ss_pred CCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHh
Confidence 111112222222222335679999999999999988877532 2
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE----cC-----CCCChhhhHhhhccccCCCC
Q 008956 288 GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YD-----FPTGVEDYVHRIGRTGRAGA 358 (547)
Q Consensus 288 ~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~----~d-----~p~s~~~yiQriGR~gR~g~ 358 (547)
++..+|++|++.+|+.+++.|++|.++|||||+++++|||+|.+++||+ || .|.+..+|+||+|||||.|.
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~ 384 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGL 384 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCC
Confidence 6789999999999999999999999999999999999999999999997 66 57899999999999999986
Q ss_pred c--eEEEEEecCC
Q 008956 359 T--GVAYTFFGDQ 369 (547)
Q Consensus 359 ~--g~~~~l~~~~ 369 (547)
+ |.++++....
T Consensus 385 d~~G~~ii~~~~~ 397 (737)
T PRK02362 385 DPYGEAVLLAKSY 397 (737)
T ss_pred CCCceEEEEecCc
Confidence 5 8888887654
No 41
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.7e-44 Score=400.77 Aligned_cols=353 Identities=21% Similarity=0.256 Sum_probs=277.7
Q ss_pred CCHHHHHHHHHC-CCCCCcHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 25 FPPELLREVHNA-GFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 25 l~~~l~~~l~~~-g~~~~~~~Q~~~i~~il~g------~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
.+..+++.+... +| +|||+|.++|+.++++ .|+|++++||+|||.+|++|++..+.. +++++||+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-------g~qvlvLv 507 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-------GKQVAVLV 507 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-------CCeEEEEe
Confidence 455666777654 77 6999999999999985 689999999999999999999888765 57999999
Q ss_pred CcHHHHHHHHHHHHHhccCCceEEEEecCCCCChh---hHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecc
Q 008956 98 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 173 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEa 173 (547)
||++||.|+++.+++++...++++..+.+.....+ .+..+.. .++|+|+||..+ ...+.+.++++|||||+
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEE 582 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecc
Confidence 99999999999999998887888888877665433 3444555 489999999533 24567889999999999
Q ss_pred cccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHH
Q 008956 174 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRL 253 (547)
Q Consensus 174 H~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 253 (547)
|++ ....+..+..++...|+|+||||+.+....+....+.++..+....... ..+..++..... ....
T Consensus 583 hrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R----~~V~t~v~~~~~---~~i~ 650 (926)
T TIGR00580 583 QRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR----LPVRTFVMEYDP---ELVR 650 (926)
T ss_pred ccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc----cceEEEEEecCH---HHHH
Confidence 994 4445666777788899999999987777666655556666555433221 123333222211 1112
Q ss_pred HHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc---cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCC
Q 008956 254 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 330 (547)
Q Consensus 254 ~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~---~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~ 330 (547)
..++.....+.+++|||++++.++.+++.|++. +.+..+||+|++.+|+.++++|++|+++|||||+++++|||+|+
T Consensus 651 ~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~ 730 (926)
T TIGR00580 651 EAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPN 730 (926)
T ss_pred HHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccccc
Confidence 223333445679999999999999999999873 67999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCC-ChhhhHhhhccccCCCCceEEEEEecCCC--hHHHHHHHHHHHHhcc---cccHHHHHHHHcCCCC
Q 008956 331 IRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVAYTFFGDQD--SRYASDLIKLLEGAKQ---QVPRELRDMASRGGGM 402 (547)
Q Consensus 331 v~~VI~~d~p~-s~~~yiQriGR~gR~g~~g~~~~l~~~~~--~~~~~~l~~~l~~~~~---~v~~~l~~l~~~~~g~ 402 (547)
+++||+++.|. +..+|+||+||+||.++.|.|++++...+ .+...+.++.+++... .+.....+|..|+.|-
T Consensus 731 v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~Rg~G~ 808 (926)
T TIGR00580 731 ANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEIRGAGN 808 (926)
T ss_pred CCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCcC
Confidence 99999999975 78899999999999999999999997543 3455556666666554 8888899999988653
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.7e-44 Score=393.76 Aligned_cols=320 Identities=25% Similarity=0.390 Sum_probs=255.3
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 36 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 36 ~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
.||.+++|+|.++|+.+++++|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+.+.++.++
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~----------~g~~lVisPl~sL~~dq~~~l~~~g- 77 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL----------KGLTVVISPLISLMKDQVDQLRAAG- 77 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc----------CCcEEEEcCCHHHHHHHHHHHHHcC-
Confidence 49999999999999999999999999999999999999998742 3478999999999999999888753
Q ss_pred CCceEEEEecCCCCChhh---HHHhh-CCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC--cHHHHHHH-
Q 008956 116 SSRISCTCLYGGAPKGPQ---LKDID-RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG--FEPQIRKI- 188 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~---~~~~~-~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g--~~~~i~~i- 188 (547)
+.+..+.++....+. +..+. ...+|+++||++|........+...++++|||||||++.+|+ |.+.+..+
T Consensus 78 ---i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~ 154 (591)
T TIGR01389 78 ---VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLG 154 (591)
T ss_pred ---CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHH
Confidence 556666666554433 22333 358999999999975444344556789999999999999877 66665554
Q ss_pred --HHhCCCCceEEEEeccCcHHHHHHHHHhcCC--CeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCC
Q 008956 189 --VKEVPARRQTLMYTATWPREVRKIAADLLVN--PVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGS 264 (547)
Q Consensus 189 --~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~--~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~ 264 (547)
...++. .+++++|||++..+...+...+.- +..+ +...+ ..++ .+.......+...+.+++.... +.
T Consensus 155 ~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~~~----r~nl--~~~v~~~~~~~~~l~~~l~~~~-~~ 225 (591)
T TIGR01389 155 SLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEF-ITSFD----RPNL--RFSVVKKNNKQKFLLDYLKKHR-GQ 225 (591)
T ss_pred HHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecCCC----CCCc--EEEEEeCCCHHHHHHHHHHhcC-CC
Confidence 444554 449999999999888766666542 2222 21111 1112 2233334556667777776654 57
Q ss_pred eEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCCh
Q 008956 265 KIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGV 343 (547)
Q Consensus 265 k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~ 343 (547)
++||||++++.++.+++.|... +.+..+|++|+.++|+.+++.|.+|+++|||||+++++|||+|++++||+|++|.++
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCH
Confidence 8999999999999999999764 889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhccccCCCCceEEEEEecCCChHHHHHHH
Q 008956 344 EDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 378 (547)
Q Consensus 344 ~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~ 378 (547)
+.|+|++||+||.|+++.|++|++..|....+.++
T Consensus 306 ~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 306 ESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred HHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999887766555544
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.2e-44 Score=405.31 Aligned_cols=340 Identities=21% Similarity=0.277 Sum_probs=248.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCC--CCCCCEEEEEcCcHHH
Q 008956 25 FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND--PRLGPTVLVLSPTREL 102 (547)
Q Consensus 25 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~--~~~~~~vLil~Ptr~L 102 (547)
|++.+.+.+.. +|..|||+|+++|+.+++++|++++||||||||++|++|++..+...... ...+.++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666554 79999999999999999999999999999999999999999887653221 1235689999999999
Q ss_pred HHHHHHHHHH-------hc----cCC-ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCc--CCCCeeEE
Q 008956 103 ATQIQDEAVK-------FG----KSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI--SLNQVSYL 168 (547)
Q Consensus 103 ~~Q~~~~~~~-------~~----~~~-~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~--~l~~~~~l 168 (547)
+.|+++.+.. +. ... .+.+...+|+....+....+...++|+|+||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 22 222 6788889999887777777777899999999999887765433 46889999
Q ss_pred EEecccccccCCcHHHHH----HHHHhCCCCceEEEEeccCcHHHHHHHHHhcCC------CeEEEeCccccccccccee
Q 008956 169 VLDEADRMLDMGFEPQIR----KIVKEVPARRQTLMYTATWPREVRKIAADLLVN------PVQVNIGNVDELAANKAIT 238 (547)
Q Consensus 169 VlDEaH~ll~~g~~~~i~----~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~------~~~i~i~~~~~~~~~~~i~ 238 (547)
||||||.+.+..+...+. .+....+...|++++|||+++ ..++.. ++.. +..+.+.... ......+.
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~-~L~~~~~~~~~r~~~iv~~~-~~k~~~i~ 253 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAK-FLVGYEDDGEPRDCEIVDAR-FVKPFDIK 253 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHH-HhcCccccCCCCceEEEccC-CCccceEE
Confidence 999999999776555443 333444467899999999875 222222 2221 1111111110 00000000
Q ss_pred EE-----EEEcCccchHHHHHHHHHh-cCCCCeEEEEcCChHHHHHHHHHHhcc-------cceEEEcCCCCHHHHHHHH
Q 008956 239 QH-----IEVLAPMDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQ-------FGAAAIHGDKSQSERDYVL 305 (547)
Q Consensus 239 ~~-----~~~~~~~~k~~~l~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~~-------~~~~~ihg~~~~~~R~~~l 305 (547)
.. ............+...+.. ...+.++||||+|+..|+.++..|++. ..+..+||++++++|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 00 0001111112222222222 234578999999999999999999863 4689999999999999999
Q ss_pred HHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCC-CCceEEEEEecC
Q 008956 306 NQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA-GATGVAYTFFGD 368 (547)
Q Consensus 306 ~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~-g~~g~~~~l~~~ 368 (547)
+.|++|.++|||||+++++|||+|++++||+++.|.++.+|+||+||+||. |....++++...
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999999999999999999999999999999987 444444444443
No 44
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4e-43 Score=387.51 Aligned_cols=352 Identities=23% Similarity=0.309 Sum_probs=268.6
Q ss_pred CHHHHHHHHHC-CCCCCcHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 26 PPELLREVHNA-GFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 26 ~~~l~~~l~~~-g~~~~~~~Q~~~i~~il~g------~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
+..+.+.+... +| +||++|.++++.++++ .++|++++||||||++|++|++..+.. +.+++||+|
T Consensus 247 ~~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-------g~q~lilaP 318 (681)
T PRK10917 247 DGELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-------GYQAALMAP 318 (681)
T ss_pred ChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEec
Confidence 34566666554 55 7999999999999886 479999999999999999999888754 679999999
Q ss_pred cHHHHHHHHHHHHHhccCCceEEEEecCCCCCh---hhHHHhhCC-CcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccc
Q 008956 99 TRELATQIQDEAVKFGKSSRISCTCLYGGAPKG---PQLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 174 (547)
Q Consensus 99 tr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~---~~~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH 174 (547)
|++||.|+++.+++++...++++..++|+.... +.+..+..+ ++|+|+||+.+.+ .+.+.++++|||||+|
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH 393 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh
Confidence 999999999999999988889999999988743 344555554 9999999987743 4567889999999999
Q ss_pred ccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHH
Q 008956 175 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 254 (547)
Q Consensus 175 ~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 254 (547)
++ .......+.......++++||||+.+....+......+...+..... ....+...+ .........+.
T Consensus 394 rf-----g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~----~r~~i~~~~--~~~~~~~~~~~ 462 (681)
T PRK10917 394 RF-----GVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP----GRKPITTVV--IPDSRRDEVYE 462 (681)
T ss_pred hh-----hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC----CCCCcEEEE--eCcccHHHHHH
Confidence 95 33334444455556889999999876654443322112222211111 011232222 22222222233
Q ss_pred HHHHhcCCCCeEEEEcCChH--------HHHHHHHHHhcc---cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccc
Q 008956 255 QILRSQEPGSKIIVFCSTKK--------MCDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 323 (547)
Q Consensus 255 ~~l~~~~~~~k~IVF~~s~~--------~~~~l~~~L~~~---~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~ 323 (547)
.+......+.+++|||+.++ .+..+++.|.+. +.+..+||+|++.+|+.++++|++|+++|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 33334456789999999643 455667777654 4699999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEcCCCC-ChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHHHHHcCCC
Q 008956 324 RGLDIKDIRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGG 401 (547)
Q Consensus 324 ~GiDip~v~~VI~~d~p~-s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~l~~~~~g 401 (547)
+|||+|++++||+++.|. ....|+|++||+||.|.+|.|++++...........++.++...+.+.....++..|+.|
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~rg~g 621 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLELRGPG 621 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHhhCCCc
Confidence 999999999999999987 678899999999999999999999965555556677888888888888788888887755
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.6e-43 Score=393.37 Aligned_cols=335 Identities=21% Similarity=0.272 Sum_probs=260.1
Q ss_pred CCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 19 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 19 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
.|+++++++.+.+.+..+||.+|+|+|.++++. +++++++++++|||||||++|.+|++..+.. .+.++|||+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~------~~~~~l~l~ 75 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR------EGGKAVYLV 75 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh------cCCeEEEEe
Confidence 578889999999999999999999999999986 7899999999999999999999999887654 146999999
Q ss_pred CcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 98 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
|+++|+.|+++.+..+. ..++++..++|+...... ....++|+|+||+++..++......+.++++||+||+|.+.
T Consensus 76 P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~ 151 (720)
T PRK00254 76 PLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIG 151 (720)
T ss_pred ChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccC
Confidence 99999999999998864 357888888887765432 23458999999999998887766678899999999999999
Q ss_pred cCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccc-eeEEEEEcCcc-------ch
Q 008956 178 DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA-ITQHIEVLAPM-------DK 249 (547)
Q Consensus 178 ~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~-i~~~~~~~~~~-------~k 249 (547)
+.++...+..++..+....|++++|||+++ ..++. .++...... ........... ..+........ ..
T Consensus 152 ~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la-~wl~~~~~~--~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 152 SYDRGATLEMILTHMLGRAQILGLSATVGN-AEELA-EWLNAELVV--SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred CccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHH-HHhCCcccc--CCCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 888999999999999889999999999975 33444 344322111 00000000000 01111111111 11
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhc----------------------------------ccceEEEcCC
Q 008956 250 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR----------------------------------QFGAAAIHGD 295 (547)
Q Consensus 250 ~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~----------------------------------~~~~~~ihg~ 295 (547)
...+.+.++ .+.++||||+|++.|+.++..|.+ ..++..+|++
T Consensus 228 ~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag 304 (720)
T PRK00254 228 ESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG 304 (720)
T ss_pred HHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC
Confidence 122333333 457999999999999887766532 1258899999
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE-------cCCCC-ChhhhHhhhccccCCC--CceEEEEE
Q 008956 296 KSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN-------YDFPT-GVEDYVHRIGRTGRAG--ATGVAYTF 365 (547)
Q Consensus 296 ~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~-------~d~p~-s~~~yiQriGR~gR~g--~~g~~~~l 365 (547)
|++++|..+++.|++|.++|||||+++++|||+|.+++||. ++.|. ...+|+||+|||||.| ..|.++++
T Consensus 305 l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 305 LGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEE
Confidence 99999999999999999999999999999999999999994 55554 5679999999999975 66899988
Q ss_pred ecCCC
Q 008956 366 FGDQD 370 (547)
Q Consensus 366 ~~~~~ 370 (547)
....+
T Consensus 385 ~~~~~ 389 (720)
T PRK00254 385 ATTEE 389 (720)
T ss_pred ecCcc
Confidence 87544
No 46
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.4e-42 Score=396.07 Aligned_cols=352 Identities=21% Similarity=0.240 Sum_probs=273.4
Q ss_pred CHHHHHHH-HHCCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 26 PPELLREV-HNAGFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 26 ~~~l~~~l-~~~g~~~~~~~Q~~~i~~il~g------~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
+....+.+ ....| +||+.|.++|+.++++ +|+|++++||+|||.+|+.+++..+.. +++++||+|
T Consensus 586 ~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-------g~qvlvLvP 657 (1147)
T PRK10689 586 DREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-------HKQVAVLVP 657 (1147)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-------CCeEEEEeC
Confidence 33444444 45577 8999999999999987 799999999999999999888776543 679999999
Q ss_pred cHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHH---HhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccc
Q 008956 99 TRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK---DIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 174 (547)
Q Consensus 99 tr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~---~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH 174 (547)
|++||.|+++.+.+++...++++.++.+.....++.. .+.. .++|+|+||+.|. ..+.+.++++|||||+|
T Consensus 658 T~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEah 732 (1147)
T PRK10689 658 TTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEH 732 (1147)
T ss_pred cHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechh
Confidence 9999999999999887776788888888776655543 3333 5899999997442 34567889999999999
Q ss_pred ccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHH
Q 008956 175 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 254 (547)
Q Consensus 175 ~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 254 (547)
++ ++ .....+..++..+|+++||||+++.+..+....+.++..+....... ..+...+...... ....
T Consensus 733 rf---G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r----~~v~~~~~~~~~~---~~k~ 800 (1147)
T PRK10689 733 RF---GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR----LAVKTFVREYDSL---VVRE 800 (1147)
T ss_pred hc---ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC----CCceEEEEecCcH---HHHH
Confidence 96 32 23455677888999999999998888888777777887775533221 1233332222221 1122
Q ss_pred HHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc---cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCc
Q 008956 255 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 331 (547)
Q Consensus 255 ~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~---~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v 331 (547)
.++.+...+.+++|||++++.++.+++.|++. +.+.++||+|++.+|+.++.+|++|+++|||||+++++|||+|++
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v 880 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccC
Confidence 23333334578999999999999999999875 578999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCC-CChhhhHhhhccccCCCCceEEEEEecCCC--hHHHHHHHHHHHHhcc---cccHHHHHHHHcCCCC
Q 008956 332 RVVVNYDFP-TGVEDYVHRIGRTGRAGATGVAYTFFGDQD--SRYASDLIKLLEGAKQ---QVPRELRDMASRGGGM 402 (547)
Q Consensus 332 ~~VI~~d~p-~s~~~yiQriGR~gR~g~~g~~~~l~~~~~--~~~~~~l~~~l~~~~~---~v~~~l~~l~~~~~g~ 402 (547)
++||..+.. .+..+|+|++||+||.++.|.|++++.... ...+...++.+++... .+...+.+|..||.|-
T Consensus 881 ~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g~ 957 (1147)
T PRK10689 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 (1147)
T ss_pred CEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCcc
Confidence 999965543 366789999999999999999998886432 3455556666666655 8888999999988764
No 47
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=4.6e-43 Score=381.46 Aligned_cols=313 Identities=22% Similarity=0.262 Sum_probs=240.1
Q ss_pred CCCCCCcHHHHHHHHHHhCCC-cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 36 AGFSSPTPIQAQSWPIALQSR-DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 36 ~g~~~~~~~Q~~~i~~il~g~-~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
.||. |||||+++|+.++.|+ ++++++|||||||.++.++++.. .. ......++++++|||+|+.|+++.+.++.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~---~~~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI---GAKVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc---cccccceEEEeCchHHHHHHHHHHHHHHH
Confidence 4887 9999999999999998 57778999999998766544422 11 11112345557799999999999999887
Q ss_pred cCC-----------------------ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCc-----------
Q 008956 115 KSS-----------------------RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI----------- 160 (547)
Q Consensus 115 ~~~-----------------------~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~----------- 160 (547)
... .+++.+++|+.....++..+..+++|||+|++ ++..+.+
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~~gYg~~~~~~ 162 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLFSGYGCGFKSR 162 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCccccccccccccc
Confidence 643 48899999999999999999999999999954 4443333
Q ss_pred -----CCCCeeEEEEecccccccCCcHHHHHHHHHhC--CCC---ceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccc
Q 008956 161 -----SLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV--PAR---RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDE 230 (547)
Q Consensus 161 -----~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l--~~~---~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~ 230 (547)
.+.++++||||||| ++++|...+..|+..+ +.. +|+++||||++.++.++...++.++..+.+... .
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~-~ 239 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK-R 239 (844)
T ss_pred cchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc-c
Confidence 26789999999999 7899999999999975 332 699999999999888888888877766655332 1
Q ss_pred cccccceeEEEEEcCccchHHHHHHHHHh--cCCCCeEEEEcCChHHHHHHHHHHhcccceEEEcCCCCHHHHH-----H
Q 008956 231 LAANKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERD-----Y 303 (547)
Q Consensus 231 ~~~~~~i~~~~~~~~~~~k~~~l~~~l~~--~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg~~~~~~R~-----~ 303 (547)
.....+.+.+ ......|...+...+.. ...+.++||||||++.|+.+++.|++. ....+||+|++.+|+ .
T Consensus 240 -l~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~-g~~lLHG~m~q~dR~~~~~~~ 316 (844)
T TIGR02621 240 -LAAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE-KFELLTGTLRGAERDDLVKKE 316 (844)
T ss_pred -ccccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc-CCeEeeCCCCHHHHhhHHHHH
Confidence 2222334432 33333343333222211 234578999999999999999999865 338999999999999 7
Q ss_pred HHHHhhc----CC-------CcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCce-EEEEEe
Q 008956 304 VLNQFRA----GR-------SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATG-VAYTFF 366 (547)
Q Consensus 304 ~l~~F~~----g~-------~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g-~~~~l~ 366 (547)
+++.|++ +. ..|||||+++++||||+. ++||++..| .+.|+||+||++|.|+.+ ..++++
T Consensus 317 il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 317 IFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 8999987 43 689999999999999986 888887776 689999999999999853 335555
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2e-42 Score=379.63 Aligned_cols=349 Identities=22% Similarity=0.288 Sum_probs=261.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 29 LLREVHNAGFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 29 l~~~l~~~g~~~~~~~Q~~~i~~il~g------~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
+.+.+...+| +||++|+++|+.++++ .+.|++++||||||++|++|++..+.. +.+++|++||++|
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-------g~qvlilaPT~~L 296 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-------GYQVALMAPTEIL 296 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-------CCcEEEECCHHHH
Confidence 3344556688 8999999999999876 258999999999999999999888764 6799999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEecCCCCChh---hHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccccc
Q 008956 103 ATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 178 (547)
Q Consensus 103 ~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~ 178 (547)
+.|+++.+.+++...++++..++|+....+ .+..+.. .++|+|+||..|.+ .+.+.++++|||||+|++..
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~ 371 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGV 371 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccH
Confidence 999999999999888899999999877554 4445554 48999999988754 45678899999999998532
Q ss_pred CCcHHHHHHHHHhCC--CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCccccccc-ccceeEEEEEcCccchHHHHHH
Q 008956 179 MGFEPQIRKIVKEVP--ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA-NKAITQHIEVLAPMDKHRRLEQ 255 (547)
Q Consensus 179 ~g~~~~i~~i~~~l~--~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~-~~~i~~~~~~~~~~~k~~~l~~ 255 (547)
.+...+..... ...++++||||+.+....+......+...+. .... ...+... ......+...+..
T Consensus 372 ----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~-----~~p~~r~~i~~~--~~~~~~~~~~~~~ 440 (630)
T TIGR00643 372 ----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIID-----ELPPGRKPITTV--LIKHDEKDIVYEF 440 (630)
T ss_pred ----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeec-----cCCCCCCceEEE--EeCcchHHHHHHH
Confidence 22222333332 2578999999986654433221111111111 1111 1112222 2222233233333
Q ss_pred HHHhcCCCCeEEEEcCCh--------HHHHHHHHHHhcc---cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcccccc
Q 008956 256 ILRSQEPGSKIIVFCSTK--------KMCDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAAR 324 (547)
Q Consensus 256 ~l~~~~~~~k~IVF~~s~--------~~~~~l~~~L~~~---~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~ 324 (547)
+.+....+.+++|||+.. ..++.+++.|.+. +.+..+||+|++.+|+.++++|++|+.+|||||+++++
T Consensus 441 i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 520 (630)
T TIGR00643 441 IEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEV 520 (630)
T ss_pred HHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeec
Confidence 333445678999999876 4566677777653 56899999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCC-ChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHHHHHcCCC
Q 008956 325 GLDIKDIRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGG 401 (547)
Q Consensus 325 GiDip~v~~VI~~d~p~-s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~l~~~~~g 401 (547)
|||+|++++||+++.|. +...|.|++||+||.|++|.|++++...........++.+....+.+.....+|..|+.|
T Consensus 521 GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~Rg~g 598 (630)
T TIGR00643 521 GVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLELRGPG 598 (630)
T ss_pred CcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhcCCCc
Confidence 99999999999999986 788999999999999999999999955455555566788888888888888888887754
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.8e-42 Score=381.48 Aligned_cols=334 Identities=20% Similarity=0.301 Sum_probs=249.8
Q ss_pred CCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 19 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 19 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
.|.+++|++.+++.+...+|. |+++|.++++.+++++++++++|||||||++++++++..+.. +.++||++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-------~~k~v~i~P 73 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-------GLKSIYIVP 73 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-------CCcEEEEec
Confidence 577889999999999999886 999999999999999999999999999999999998887754 458999999
Q ss_pred cHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccccc
Q 008956 99 TRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 178 (547)
Q Consensus 99 tr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~ 178 (547)
+++|+.|+++++.++. ..++.+...+|+...... ....++|+|+||+++..++.+....+.++++||+||||++.+
T Consensus 74 ~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 74 LRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred hHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccC
Confidence 9999999999998864 356777777776654322 224579999999999888877666688999999999999988
Q ss_pred CCcHHHHHHHHHh---CCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCccccccccccee--EEEEEcCccchHHHH
Q 008956 179 MGFEPQIRKIVKE---VPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAIT--QHIEVLAPMDKHRRL 253 (547)
Q Consensus 179 ~g~~~~i~~i~~~---l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~--~~~~~~~~~~k~~~l 253 (547)
..+...+..++.. +....|++++|||+++ ..++.. ++...... ......+....+. ..+...........+
T Consensus 150 ~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~~~--~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~ 225 (674)
T PRK01172 150 EDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASLIK--SNFRPVPLKLGILYRKRLILDGYERSQVDI 225 (674)
T ss_pred CCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCccC--CCCCCCCeEEEEEecCeeeecccccccccH
Confidence 8777777766543 4567899999999974 334433 43322110 0000000000000 000000011111112
Q ss_pred HHHHHh-cCCCCeEEEEcCChHHHHHHHHHHhcc--------------------------cceEEEcCCCCHHHHHHHHH
Q 008956 254 EQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQ--------------------------FGAAAIHGDKSQSERDYVLN 306 (547)
Q Consensus 254 ~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~~--------------------------~~~~~ihg~~~~~~R~~~l~ 306 (547)
..++.+ ...+.++||||++++.|+.+++.|.+. .++..+|+++++.+|..+++
T Consensus 226 ~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 226 NSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred HHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 333333 345679999999999999999888542 24788999999999999999
Q ss_pred HhhcCCCcEEEEccccccCCCCCCccEEEEcCC---------CCChhhhHhhhccccCCCC--ceEEEEEecCC
Q 008956 307 QFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF---------PTGVEDYVHRIGRTGRAGA--TGVAYTFFGDQ 369 (547)
Q Consensus 307 ~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~---------p~s~~~yiQriGR~gR~g~--~g~~~~l~~~~ 369 (547)
.|++|.++|||||+++++|||+|+..+|| .+. |.++.+|.||+|||||.|. .|.++++....
T Consensus 306 ~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 306 MFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999865555 332 4578899999999999984 56677776543
No 50
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-44 Score=325.66 Aligned_cols=332 Identities=30% Similarity=0.552 Sum_probs=286.6
Q ss_pred CccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCc
Q 008956 20 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 99 (547)
Q Consensus 20 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Pt 99 (547)
|.+.-|.+++++++..+||..|..+|.++||.++-|-|++++|..|.|||.+|.+.-+..+.-.. ....+|++|.|
T Consensus 44 frdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~----g~vsvlvmcht 119 (387)
T KOG0329|consen 44 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD----GQVSVLVMCHT 119 (387)
T ss_pred hhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC----CeEEEEEEecc
Confidence 55666899999999999999999999999999999999999999999999999988777654321 23578999999
Q ss_pred HHHHHHHHHHHHHhccC-CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccccc
Q 008956 100 RELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 178 (547)
Q Consensus 100 r~L~~Q~~~~~~~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~ 178 (547)
||||-|+..++..|.+. ..+++.+.+||.........+.+-++|+|+||++++.+...+.+++.+++.+|+||||.|+.
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH
Confidence 99999999998887654 56889999999998888888888899999999999999999999999999999999999885
Q ss_pred C-CcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHH
Q 008956 179 M-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL 257 (547)
Q Consensus 179 ~-g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 257 (547)
+ .....+++|....|...|+++||||++++++..++.++.+|..+.+.+...+.. ..+.|++....+.+|...+.++|
T Consensus 200 ~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtL-HGLqQ~YvkLke~eKNrkl~dLL 278 (387)
T KOG0329|consen 200 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTL-HGLQQYYVKLKENEKNRKLNDLL 278 (387)
T ss_pred HHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhh-hhHHHHHHhhhhhhhhhhhhhhh
Confidence 3 467889999999999999999999999999999999999999988876554433 45677788888888999999988
Q ss_pred HhcCCCCeEEEEcCChHHHHHHHHHHhcccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEc
Q 008956 258 RSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNY 337 (547)
Q Consensus 258 ~~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~ 337 (547)
....- .+++||+.+..... | ..+ ||+|+++++|+||..++.||||
T Consensus 279 d~LeF-NQVvIFvKsv~Rl~------------------------------f---~kr-~vat~lfgrgmdiervNi~~NY 323 (387)
T KOG0329|consen 279 DVLEF-NQVVIFVKSVQRLS------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNY 323 (387)
T ss_pred hhhhh-cceeEeeehhhhhh------------------------------h---hhh-hHHhhhhccccCcccceeeecc
Confidence 87765 48899998765410 2 223 8999999999999999999999
Q ss_pred CCCCChhhhHhhhccccCCCCceEEEEEecC-CChHHHHHHHHHHHHhcccccHH
Q 008956 338 DFPTGVEDYVHRIGRTGRAGATGVAYTFFGD-QDSRYASDLIKLLEGAKQQVPRE 391 (547)
Q Consensus 338 d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~-~~~~~~~~l~~~l~~~~~~v~~~ 391 (547)
|+|.+..+|+||++||||.|.+|.+++|++. ++...+..+.+..+.....+|++
T Consensus 324 dmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 324 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred CCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 9999999999999999999999999999975 45667777777777777777776
No 51
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3e-40 Score=345.82 Aligned_cols=324 Identities=27% Similarity=0.409 Sum_probs=258.3
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
||..+++-|.++|..+++++|+++..|||.||++||.+|++.. ...+|||+|..+|...+.+.++..+
T Consensus 14 Gy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G~TLVVSPLiSLM~DQV~~l~~~G-- 81 (590)
T COG0514 14 GYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EGLTLVVSPLISLMKDQVDQLEAAG-- 81 (590)
T ss_pred CccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CCCEEEECchHHHHHHHHHHHHHcC--
Confidence 8999999999999999999999999999999999999998765 2389999999999999999988865
Q ss_pred CceEEEEecCCCCChh---hHHHhhCC-CcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC--cHHHHHHHH-
Q 008956 117 SRISCTCLYGGAPKGP---QLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG--FEPQIRKIV- 189 (547)
Q Consensus 117 ~~i~~~~~~g~~~~~~---~~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g--~~~~i~~i~- 189 (547)
+.+.++.+.....+ .+..+..+ .+++..+||+|..--....+.-..+.++||||||++.+|| |.+.+..+-
T Consensus 82 --i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~ 159 (590)
T COG0514 82 --IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGR 159 (590)
T ss_pred --ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHH
Confidence 66666666544433 34445554 8999999999875433333445678899999999999998 888777654
Q ss_pred --HhCCCCceEEEEeccCcHHHHHHHHHhcCC-CeEEEeCcccccccccceeEEEEEc-CccchHHHHHHHHHhcCCCCe
Q 008956 190 --KEVPARRQTLMYTATWPREVRKIAADLLVN-PVQVNIGNVDELAANKAITQHIEVL-APMDKHRRLEQILRSQEPGSK 265 (547)
Q Consensus 190 --~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~-~~~i~i~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~~l~~~~~~~k 265 (547)
..++ ...++++|||.++.+...+...+.- ...+.+...+.. ++...+... ....+...+.+ ........
T Consensus 160 l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp----Ni~~~v~~~~~~~~q~~fi~~--~~~~~~~~ 232 (590)
T COG0514 160 LRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP----NLALKVVEKGEPSDQLAFLAT--VLPQLSKS 232 (590)
T ss_pred HHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc----hhhhhhhhcccHHHHHHHHHh--hccccCCC
Confidence 4455 6789999999999998776666543 323334333321 122111111 12222221211 12344567
Q ss_pred EEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChh
Q 008956 266 IIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVE 344 (547)
Q Consensus 266 ~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~ 344 (547)
.||||.|++.++.+++.|... +.+..+|++|+.++|+.+.++|..++.+|+|||.++++|||-|++.+|||||+|.+++
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 899999999999999999976 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHH
Q 008956 345 DYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLL 381 (547)
Q Consensus 345 ~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l 381 (547)
+|.|-+|||||.|.+..|++||.+.|....+.+++..
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 9999999999999999999999999988777776654
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.2e-40 Score=355.16 Aligned_cols=336 Identities=23% Similarity=0.277 Sum_probs=264.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhc-cCCCCCCCEEEEEcCcHHHH
Q 008956 25 FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRC-RNDPRLGPTVLVLSPTRELA 103 (547)
Q Consensus 25 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~-~~~~~~~~~vLil~Ptr~L~ 103 (547)
|++.+.+.+..+ |..|||.|.++||.+.+|+++|+.||||||||+++++|++..+... ...+..+-.+|||+|.|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 689999999988 9999999999999999999999999999999999999999999886 34444567899999999999
Q ss_pred HHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCC--cCCCCeeEEEEecccccccCCc
Q 008956 104 TQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR--ISLNQVSYLVLDEADRMLDMGF 181 (547)
Q Consensus 104 ~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~--~~l~~~~~lVlDEaH~ll~~g~ 181 (547)
..+...+..+....++.+.+-+|+++..+..+...+.+||+|+||+.|.-++.... -.+.++.++||||.|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 99999999999999999999999999888888888899999999999988776432 3478999999999999887654
Q ss_pred HHH----HHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCC--CeEEEeCcccccccccceeEEEEEcCcc------ch
Q 008956 182 EPQ----IRKIVKEVPARRQTLMYTATWPREVRKIAADLLVN--PVQVNIGNVDELAANKAITQHIEVLAPM------DK 249 (547)
Q Consensus 182 ~~~----i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~--~~~i~i~~~~~~~~~~~i~~~~~~~~~~------~k 249 (547)
..+ +..+....+ ..|.+.+|||..+ ..++++.+... +..+..... .......+...... ..
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~-----~k~~~i~v~~p~~~~~~~~~~~ 239 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA-----AKKLEIKVISPVEDLIYDEELW 239 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc-----CCcceEEEEecCCccccccchh
Confidence 443 344444444 8899999999762 33333333333 222221111 11111111111111 11
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc--cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCC
Q 008956 250 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ--FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLD 327 (547)
Q Consensus 250 ~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~--~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiD 327 (547)
...+..+.........+|||+||+..++.++..|++. .++..+||.++.++|..++++|++|+.+++|||+.++-|||
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGID 319 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGID 319 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccc
Confidence 1222222222233458999999999999999999976 58999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCChhhhHhhhccccCC-CCceEEEEEecC
Q 008956 328 IKDIRVVVNYDFPTGVEDYVHRIGRTGRA-GATGVAYTFFGD 368 (547)
Q Consensus 328 ip~v~~VI~~d~p~s~~~yiQriGR~gR~-g~~g~~~~l~~~ 368 (547)
+-+++.||++..|.++..++||+||+|+. +....++++..+
T Consensus 320 iG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 320 IGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999975 555566655544
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.8e-39 Score=370.51 Aligned_cols=298 Identities=24% Similarity=0.313 Sum_probs=222.4
Q ss_pred EEcCCCchHHHHHHHHHHHHhhhccC------CCCCCCEEEEEcCcHHHHHHHHHHHHHhc------------cCCceEE
Q 008956 60 AIAKTGSGKTLGYLLPGFIHLKRCRN------DPRLGPTVLVLSPTRELATQIQDEAVKFG------------KSSRISC 121 (547)
Q Consensus 60 v~a~TGsGKT~~~l~~~l~~l~~~~~------~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~------------~~~~i~~ 121 (547)
|+||||||||++|++|++..+..... ....+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999998865321 11235799999999999999999886421 1246888
Q ss_pred EEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC-CcCCCCeeEEEEecccccccCC----cHHHHHHHHHhCCCCc
Q 008956 122 TCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEADRMLDMG----FEPQIRKIVKEVPARR 196 (547)
Q Consensus 122 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlDEaH~ll~~g----~~~~i~~i~~~l~~~~ 196 (547)
...+|+.+..+..+.+.+.++|||+||++|..++..+ ...++++++|||||+|.|++.. +...+..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8999999888877777778999999999999887643 3458899999999999998754 3445666666677789
Q ss_pred eEEEEeccCcHHHHHHHHHhcCC--CeEEEeCcccccccccceeEEEEEcCccc---------------------hHHHH
Q 008956 197 QTLMYTATWPREVRKIAADLLVN--PVQVNIGNVDELAANKAITQHIEVLAPMD---------------------KHRRL 253 (547)
Q Consensus 197 q~l~~SAT~~~~~~~~~~~~l~~--~~~i~i~~~~~~~~~~~i~~~~~~~~~~~---------------------k~~~l 253 (547)
|+|++|||+++ ..+++ .++.. +..+. ..... ....+...+. ..... .....
T Consensus 161 QrIgLSATI~n-~eevA-~~L~g~~pv~Iv-~~~~~--r~~~l~v~vp-~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVA-AFLGGDRPVTVV-NPPAM--RHPQIRIVVP-VANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred eEEEEEeeCCC-HHHHH-HHhcCCCCEEEE-CCCCC--cccceEEEEe-cCchhhccccccccccccchhhhhhhhHHHH
Confidence 99999999986 34444 45432 44332 11111 1111111111 11100 00111
Q ss_pred HHHHHhcCCCCeEEEEcCChHHHHHHHHHHhccc----------------------------------ceEEEcCCCCHH
Q 008956 254 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQF----------------------------------GAAAIHGDKSQS 299 (547)
Q Consensus 254 ~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~~----------------------------------~~~~ihg~~~~~ 299 (547)
..++.....+.++||||||++.|+.++..|++.+ .+..+||+++++
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 2333333446789999999999999999887531 256799999999
Q ss_pred HHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCC-CCceEEE
Q 008956 300 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA-GATGVAY 363 (547)
Q Consensus 300 ~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~-g~~g~~~ 363 (547)
+|..+++.|++|++++||||++++.||||+++++||+++.|.++.+|+||+||+||. +..+.++
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 999999999999999999999999999999999999999999999999999999997 2333444
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.5e-39 Score=346.95 Aligned_cols=311 Identities=19% Similarity=0.263 Sum_probs=229.3
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCchHHHH---------HHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 008956 42 TPIQAQSWPIALQSRDIVAIAKTGSGKTLG---------YLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 112 (547)
Q Consensus 42 ~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~---------~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~ 112 (547)
-.+|+++++.+++++++|++|+||||||.+ |++|.+..+..... .....+++|++||++||.|+...+.+
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~-~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP-NFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc-ccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 468999999999999999999999999986 34444544432110 11245899999999999999999877
Q ss_pred hccC---CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHH
Q 008956 113 FGKS---SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIV 189 (547)
Q Consensus 113 ~~~~---~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~ 189 (547)
.... .+..+.+.+|+... .+........+|+|+|+... ...+.++++|||||||++..++ ..+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 5543 35667778888763 22222233679999997521 1247789999999999998765 4455555
Q ss_pred HhCC-CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcC----------ccchHHHHHHHHH
Q 008956 190 KEVP-ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA----------PMDKHRRLEQILR 258 (547)
Q Consensus 190 ~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~----------~~~k~~~l~~~l~ 258 (547)
..+. ..+|+++||||++.++..+ ..++.++..+.+... ....+.+.+.... ..++...+..+..
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr----t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~ 389 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG----TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKK 389 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC----cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHH
Confidence 4443 3469999999999888766 678888888776432 1122333332111 1122222222222
Q ss_pred hc-CCCCeEEEEcCChHHHHHHHHHHhcc---cceEEEcCCCCHHHHHHHHHHh-hcCCCcEEEEccccccCCCCCCccE
Q 008956 259 SQ-EPGSKIIVFCSTKKMCDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQF-RAGRSPVLVATDVAARGLDIKDIRV 333 (547)
Q Consensus 259 ~~-~~~~k~IVF~~s~~~~~~l~~~L~~~---~~~~~ihg~~~~~~R~~~l~~F-~~g~~~ILVaT~~~~~GiDip~v~~ 333 (547)
.. ..+..+||||+++.+++.+++.|++. +.+..+||++++. ++++++| ++|+.+|||||+++++|||||+|++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 22 23468999999999999999999864 7899999999985 4667777 6899999999999999999999999
Q ss_pred EEEcC---CCC---------ChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 334 VVNYD---FPT---------GVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 334 VI~~d---~p~---------s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
||+++ .|. |.++|+||+|||||. ++|.|+.|+++.+.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 554 788999999999999 88999999987653
No 55
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5e-38 Score=315.06 Aligned_cols=325 Identities=25% Similarity=0.283 Sum_probs=244.1
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
+..+++.||......++.+ ++||+.|||.|||+++++.+...+.+. +.++|+++||+-|+.|.++.|.++..-
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GGKVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CCeEEEecCCchHHHHHHHHHHHHhCC
Confidence 4568899999999888886 999999999999999888887777662 338999999999999999999999887
Q ss_pred CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCc
Q 008956 117 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 196 (547)
Q Consensus 117 ~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~ 196 (547)
..-.++.++|.....+....+.. .+|+|+||+.+.+-+..+.+++.++.+||||||||.....-...+.+..-...+++
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 77778888888877666555544 58999999999999999999999999999999999876544455555455556677
Q ss_pred eEEEEeccCcHH---HHHHHHHhcCCCeEEEeCccccccccc--------------------------------------
Q 008956 197 QTLMYTATWPRE---VRKIAADLLVNPVQVNIGNVDELAANK-------------------------------------- 235 (547)
Q Consensus 197 q~l~~SAT~~~~---~~~~~~~~l~~~~~i~i~~~~~~~~~~-------------------------------------- 235 (547)
.++++||||-.. +.+++..+-.+.+.+......+.....
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 899999997422 222333222221111111100000000
Q ss_pred ---------------ce------eEE------------------------------------------------------
Q 008956 236 ---------------AI------TQH------------------------------------------------------ 240 (547)
Q Consensus 236 ---------------~i------~~~------------------------------------------------------ 240 (547)
.. ...
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 00 000
Q ss_pred -----------------EEEcCccchHHHHHHHHHhc---CCCCeEEEEcCChHHHHHHHHHHhcccceE---EE-----
Q 008956 241 -----------------IEVLAPMDKHRRLEQILRSQ---EPGSKIIVFCSTKKMCDQLARNLTRQFGAA---AI----- 292 (547)
Q Consensus 241 -----------------~~~~~~~~k~~~l~~~l~~~---~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~---~i----- 292 (547)
....-...|...+.+++++. ..+.++|||++.+..++.+.++|.+..... .+
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 00000011333344444432 344799999999999999999998753322 22
Q ss_pred --cCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCC
Q 008956 293 --HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 370 (547)
Q Consensus 293 --hg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~ 370 (547)
..+|+|.++..++++|+.|+++|||||+++++|||||+++.||+|++..|+..++||.|||||. ++|.+++|+++..
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 2579999999999999999999999999999999999999999999999999999999999999 8899999998873
No 56
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.4e-38 Score=362.01 Aligned_cols=296 Identities=23% Similarity=0.302 Sum_probs=233.0
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
|+ +||++|+++++.++++++++++||||+|||+ |++++...+.. .++++|||+||++|+.|+++.+++++..
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~------~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK------KGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh------cCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 66 8999999999999999999999999999996 45554444332 2579999999999999999999999988
Q ss_pred CceEEEEecCCCC-----ChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccccc-----------C
Q 008956 117 SRISCTCLYGGAP-----KGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-----------M 179 (547)
Q Consensus 117 ~~i~~~~~~g~~~-----~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~-----------~ 179 (547)
.++.+..++++.. ..++...+.. .++|+|+||++|.+.+. .+....+++|||||||+|++ +
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 7787777766543 2333444554 58999999999998876 45566799999999999996 6
Q ss_pred CcH-HHHHHHHHhCCC------------------------CceEEEEeccCcHH-HHHHHHHhcCCCeEEEeCccccccc
Q 008956 180 GFE-PQIRKIVKEVPA------------------------RRQTLMYTATWPRE-VRKIAADLLVNPVQVNIGNVDELAA 233 (547)
Q Consensus 180 g~~-~~i~~i~~~l~~------------------------~~q~l~~SAT~~~~-~~~~~~~~l~~~~~i~i~~~~~~~~ 233 (547)
||. ..+..++..++. .+|++++|||+++. +.. .++.+...+.+..... .
T Consensus 228 GF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~--~ 302 (1176)
T PRK09401 228 GFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVF--Y 302 (1176)
T ss_pred CCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccc--c
Confidence 784 678777777664 68999999999864 432 1223333444444322 2
Q ss_pred ccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHH---HHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhh
Q 008956 234 NKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKM---CDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFR 309 (547)
Q Consensus 234 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~---~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~ 309 (547)
..++.+.+.... ++...+..+++... ..+||||+++.. ++.+++.|+.. +.+..+||++ +..+++|+
T Consensus 303 ~rnI~~~yi~~~--~k~~~L~~ll~~l~--~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~ 373 (1176)
T PRK09401 303 LRNIVDSYIVDE--DSVEKLVELVKRLG--DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE 373 (1176)
T ss_pred cCCceEEEEEcc--cHHHHHHHHHHhcC--CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH
Confidence 234555555443 67777888887654 479999999777 99999999875 9999999999 23469999
Q ss_pred cCCCcEEEE----ccccccCCCCCC-ccEEEEcCCCC------ChhhhHhhhccccCC
Q 008956 310 AGRSPVLVA----TDVAARGLDIKD-IRVVVNYDFPT------GVEDYVHRIGRTGRA 356 (547)
Q Consensus 310 ~g~~~ILVa----T~~~~~GiDip~-v~~VI~~d~p~------s~~~yiQriGR~gR~ 356 (547)
+|+++|||| |++++||||+|+ +++||||+.|. ..+.|.||+||+...
T Consensus 374 ~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 374 EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 999999999 699999999999 89999999998 678899999999743
No 57
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=7e-38 Score=335.53 Aligned_cols=308 Identities=18% Similarity=0.193 Sum_probs=220.9
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 008956 38 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 117 (547)
Q Consensus 38 ~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~ 117 (547)
...|+++|.++++.++.+++.++++|||+|||+++...+...+.. ...++|||+||++|+.||.+.+.++....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 468999999999999999999999999999998765432222221 12389999999999999999999987654
Q ss_pred ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCce
Q 008956 118 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 197 (547)
Q Consensus 118 ~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q 197 (547)
...+..+.++.... ...+|+|+||++|.+... ..+.++++||+||||++.. ..+..++..+++.++
T Consensus 186 ~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~~ 251 (501)
T PHA02558 186 REAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCKF 251 (501)
T ss_pred ccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHhhhccce
Confidence 45555566665432 347899999999876432 2467899999999999864 456677777877889
Q ss_pred EEEEeccCcHHHHHHH-HHhcCCCeEEEeCcccccccccc-----e--------------------eEEE-EEcCccchH
Q 008956 198 TLMYTATWPREVRKIA-ADLLVNPVQVNIGNVDELAANKA-----I--------------------TQHI-EVLAPMDKH 250 (547)
Q Consensus 198 ~l~~SAT~~~~~~~~~-~~~l~~~~~i~i~~~~~~~~~~~-----i--------------------~~~~-~~~~~~~k~ 250 (547)
+++||||+++...... ...+..+....+...+ ...... + .+.+ .......+.
T Consensus 252 ~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~-li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn 330 (501)
T PHA02558 252 KFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQ-LMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRN 330 (501)
T ss_pred EEEEeccCCCccccHHHHHHhhCCceEEecHHH-HHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHH
Confidence 9999999875432111 1111122222211100 000000 0 0000 001111222
Q ss_pred HHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEc-cccccCCC
Q 008956 251 RRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT-DVAARGLD 327 (547)
Q Consensus 251 ~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT-~~~~~GiD 327 (547)
..+..++... ..+.++||||.++++++.+++.|++. ..+..+||++++++|+.+++.|++++..||||| +++++|+|
T Consensus 331 ~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 331 KWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 2333333222 34568899999999999999999875 789999999999999999999999999999998 89999999
Q ss_pred CCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEe
Q 008956 328 IKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFF 366 (547)
Q Consensus 328 ip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~ 366 (547)
+|++++||++.++.+...|+||+||++|.+..+....++
T Consensus 411 ip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 411 IKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred cccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 999999999999999999999999999987655333333
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.3e-37 Score=362.76 Aligned_cols=314 Identities=19% Similarity=0.251 Sum_probs=239.2
Q ss_pred HHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 32 EVHN-AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 32 ~l~~-~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
.++. .|| +||++|+++++.++++++++++||||+|||++++++++..... +.++|||+||++|+.|+++.+
T Consensus 71 ~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~-------g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 71 FFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALK-------GKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhc-------CCeEEEEECHHHHHHHHHHHH
Confidence 3444 699 7999999999999999999999999999999666655543222 568999999999999999999
Q ss_pred HHhccCC--ceEEEEecCCCCChhh---HHHhhCC-CcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccccc------
Q 008956 111 VKFGKSS--RISCTCLYGGAPKGPQ---LKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD------ 178 (547)
Q Consensus 111 ~~~~~~~--~i~~~~~~g~~~~~~~---~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~------ 178 (547)
+.++... ++.+..++|+....++ +..+..+ ++|+|+||++|.+.+... ...++++|||||||+|++
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccccccc
Confidence 9987654 4667778888776654 3445554 899999999998876532 226789999999999986
Q ss_pred -----CCcHHHHHH----HHH----------------------hCCCCce-EEEEeccCcHHHHHHHHHhcCCCeEEEeC
Q 008956 179 -----MGFEPQIRK----IVK----------------------EVPARRQ-TLMYTATWPREVRKIAADLLVNPVQVNIG 226 (547)
Q Consensus 179 -----~g~~~~i~~----i~~----------------------~l~~~~q-~l~~SAT~~~~~~~~~~~~l~~~~~i~i~ 226 (547)
+||.+++.. ++. .++..+| ++++|||++.... ...++.++..+.+.
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeEEEec
Confidence 588877764 322 2345555 6779999985311 11234455556554
Q ss_pred cccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHH---HHHHHHHHhcc-cceEEEcCCCCHHHHH
Q 008956 227 NVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKM---CDQLARNLTRQ-FGAAAIHGDKSQSERD 302 (547)
Q Consensus 227 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~---~~~l~~~L~~~-~~~~~ihg~~~~~~R~ 302 (547)
... .....+.+.+.......+ ..+..+++.. +..+||||++++. |+.+++.|.+. +.+..+|++ |.
T Consensus 299 ~~~--~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~ 368 (1638)
T PRK14701 299 SGR--SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NK 368 (1638)
T ss_pred CCC--CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HH
Confidence 432 233345566555444444 5677777765 4689999999875 58999999865 899999984 88
Q ss_pred HHHHHhhcCCCcEEEEc----cccccCCCCCC-ccEEEEcCCCC---ChhhhHhhh-------------ccccCCCCceE
Q 008956 303 YVLNQFRAGRSPVLVAT----DVAARGLDIKD-IRVVVNYDFPT---GVEDYVHRI-------------GRTGRAGATGV 361 (547)
Q Consensus 303 ~~l~~F~~g~~~ILVaT----~~~~~GiDip~-v~~VI~~d~p~---s~~~yiQri-------------GR~gR~g~~g~ 361 (547)
.++++|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|.. ||++|.|.+..
T Consensus 369 ~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 369 KGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred HHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcch
Confidence 99999999999999999 58999999999 99999999999 888777765 99999998877
Q ss_pred EEEEec
Q 008956 362 AYTFFG 367 (547)
Q Consensus 362 ~~~l~~ 367 (547)
++..+.
T Consensus 449 ~~~~~~ 454 (1638)
T PRK14701 449 GVLDVF 454 (1638)
T ss_pred hHHHhH
Confidence 774443
No 59
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.1e-37 Score=340.98 Aligned_cols=303 Identities=21% Similarity=0.268 Sum_probs=230.6
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc-cCCceEE
Q 008956 43 PIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG-KSSRISC 121 (547)
Q Consensus 43 ~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~-~~~~i~~ 121 (547)
.+-.+.+..+.+++++|++|+||||||+++.++++..... +.+++|+.|+|++|.|+++.+.+.. ...+..+
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 3445666777788999999999999999999998876521 4589999999999999999886443 3344444
Q ss_pred EEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccc-ccccCCcHH-HHHHHHHhCCCCceEE
Q 008956 122 TCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD-RMLDMGFEP-QIRKIVKEVPARRQTL 199 (547)
Q Consensus 122 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH-~ll~~g~~~-~i~~i~~~l~~~~q~l 199 (547)
...+.... ......+|+|+|+++|++.+.. ...+.++++|||||+| ++++.++.- .+..+...+++..|+|
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 43333321 2234578999999999998875 4578999999999999 578776643 3455666678889999
Q ss_pred EEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchH-----HHHHHHHHhcCCCCeEEEEcCChH
Q 008956 200 MYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKH-----RRLEQILRSQEPGSKIIVFCSTKK 274 (547)
Q Consensus 200 ~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~~l~~~~~~~k~IVF~~s~~ 274 (547)
+||||++.+. +..++.++..+.+.... ..+.+++......++. ..+..++.. ...++||||+++.
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr~-----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ 220 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGRS-----FPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQA 220 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCcc-----eeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHH
Confidence 9999998654 35666655555443211 1233333333222222 223333332 2468999999999
Q ss_pred HHHHHHHHHhc----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCC--------
Q 008956 275 MCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTG-------- 342 (547)
Q Consensus 275 ~~~~l~~~L~~----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s-------- 342 (547)
+++.+++.|++ .+.+..+||+|++++|..+++.|++|..+|||||+++++|||||+|++||++++|..
T Consensus 221 eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g 300 (819)
T TIGR01970 221 EIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTG 300 (819)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccC
Confidence 99999999986 477899999999999999999999999999999999999999999999999998742
Q ss_pred ----------hhhhHhhhccccCCCCceEEEEEecCCC
Q 008956 343 ----------VEDYVHRIGRTGRAGATGVAYTFFGDQD 370 (547)
Q Consensus 343 ----------~~~yiQriGR~gR~g~~g~~~~l~~~~~ 370 (547)
..+|+||+||+||. ++|.||.||++.+
T Consensus 301 ~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 301 ITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred CceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 34589999999999 8999999998654
No 60
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=8.7e-39 Score=312.00 Aligned_cols=276 Identities=33% Similarity=0.589 Sum_probs=225.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHh---ccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeE
Q 008956 91 PTVLVLSPTRELATQIQDEAVKF---GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSY 167 (547)
Q Consensus 91 ~~vLil~Ptr~L~~Q~~~~~~~~---~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 167 (547)
+.+||+-|++||++|++..+++| ..+..++...++|+...+.+...+.++.+|+|+||++|.+.++.+.+.+.++.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 57899999999999999855554 445566777889999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCcHHHHHHHHHhCCC------CceEEEEeccCc-HHHHHHHHHhcCCCeEEEeCcccccccccceeEE
Q 008956 168 LVLDEADRMLDMGFEPQIRKIVKEVPA------RRQTLMYTATWP-REVRKIAADLLVNPVQVNIGNVDELAANKAITQH 240 (547)
Q Consensus 168 lVlDEaH~ll~~g~~~~i~~i~~~l~~------~~q~l~~SAT~~-~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~ 240 (547)
+|+|||+.++..++...|..+..++|. ..|.++.|||+. -++..+....|.-|..+.+...+..+. .+...
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe--tvHhv 444 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE--TVHHV 444 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch--hhccc
Confidence 999999999999999999998888874 468999999974 356667777777787777765543221 12111
Q ss_pred EEEcCcc------------------------------chHHHHHHHH---------HhcCCCCeEEEEcCChHHHHHHHH
Q 008956 241 IEVLAPM------------------------------DKHRRLEQIL---------RSQEPGSKIIVFCSTKKMCDQLAR 281 (547)
Q Consensus 241 ~~~~~~~------------------------------~k~~~l~~~l---------~~~~~~~k~IVF~~s~~~~~~l~~ 281 (547)
+..+.+. +.......++ ++. .-.++||||.|+.+|+.|.+
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHH
Confidence 2111111 0011111121 222 23589999999999999999
Q ss_pred HHhcc----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCC
Q 008956 282 NLTRQ----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAG 357 (547)
Q Consensus 282 ~L~~~----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g 357 (547)
++.++ |.|.++|++..+.+|.+.++.|+..+.++|||||++++||||..+-++||+.+|.+...|+|||||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 99753 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEecCC
Q 008956 358 ATGVAYTFFGDQ 369 (547)
Q Consensus 358 ~~g~~~~l~~~~ 369 (547)
.-|.+++++...
T Consensus 604 rmglaislvat~ 615 (725)
T KOG0349|consen 604 RMGLAISLVATV 615 (725)
T ss_pred hcceeEEEeecc
Confidence 999999998543
No 61
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.9e-37 Score=338.71 Aligned_cols=303 Identities=18% Similarity=0.278 Sum_probs=229.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh-ccCCceEE
Q 008956 43 PIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF-GKSSRISC 121 (547)
Q Consensus 43 ~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~-~~~~~i~~ 121 (547)
.+-.+.+..+.++++++++|+||||||++|.++++..... ..++||++|||++|.|+++.+.+. ....+..+
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-------CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 3445666777788999999999999999999888765321 348999999999999999988654 44455556
Q ss_pred EEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc-cccCCcH-HHHHHHHHhCCCCceEE
Q 008956 122 TCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR-MLDMGFE-PQIRKIVKEVPARRQTL 199 (547)
Q Consensus 122 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~-ll~~g~~-~~i~~i~~~l~~~~q~l 199 (547)
...+++... .....+|+|+||++|.+.+.. ...+.++++|||||+|+ .++.++. ..+..++..++++.|++
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 555554322 123458999999999998875 45789999999999996 5555432 33455667778889999
Q ss_pred EEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHH-----HHHHHHHhcCCCCeEEEEcCChH
Q 008956 200 MYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR-----RLEQILRSQEPGSKIIVFCSTKK 274 (547)
Q Consensus 200 ~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~~l~~~~~~~k~IVF~~s~~ 274 (547)
+||||++.+. +..++.++..+.+... ...+.+++......++.. .+..++.. ....+||||+++.
T Consensus 154 lmSATl~~~~---l~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ 223 (812)
T PRK11664 154 IMSATLDNDR---LQQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGVG 223 (812)
T ss_pred EEecCCCHHH---HHHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHH
Confidence 9999998652 3566665555544321 112344443333333332 23333332 2478999999999
Q ss_pred HHHHHHHHHhc----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCC---------
Q 008956 275 MCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT--------- 341 (547)
Q Consensus 275 ~~~~l~~~L~~----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~--------- 341 (547)
+++.+++.|++ .+.+..+||++++++|+.+++.|++|+.+|||||+++++|||||+|++||+++++.
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g 303 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTG 303 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCC
Confidence 99999999986 36788999999999999999999999999999999999999999999999988764
Q ss_pred ---------ChhhhHhhhccccCCCCceEEEEEecCCC
Q 008956 342 ---------GVEDYVHRIGRTGRAGATGVAYTFFGDQD 370 (547)
Q Consensus 342 ---------s~~~yiQriGR~gR~g~~g~~~~l~~~~~ 370 (547)
|..+|+||.||+||. .+|.||.||++.+
T Consensus 304 ~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 304 LTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred cceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 235799999999999 6999999998643
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.2e-36 Score=322.77 Aligned_cols=315 Identities=20% Similarity=0.203 Sum_probs=241.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.|+|+|..+++.+++|+ |+.+.||+|||++|++|++..... ++.++||+||++||.|.++++.+++...++
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-------G~~v~VvTptreLA~qdae~~~~l~~~lGl 173 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-------GLPVHVITVNDYLAERDAELMRPLYEALGL 173 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-------CCeEEEEcCcHHHHHHHHHHHHHHHhhcCC
Confidence 88999999999999999 999999999999999999987654 679999999999999999999999999999
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcCCc-------------------------CCCCeeEEEEecc
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRRI-------------------------SLNQVSYLVLDEA 173 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~~-------------------------~l~~~~~lVlDEa 173 (547)
++.+++++.. ...++...+|+|+++|...| .|+|..... ....+.+.||||+
T Consensus 174 sv~~i~gg~~--~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 174 TVGCVVEDQS--PDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred EEEEEeCCCC--HHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 9999999865 34555667899999999887 556554321 1245789999999
Q ss_pred ccccc-C-----------------CcHHHHHHHHHhCCC-----------------------------------------
Q 008956 174 DRMLD-M-----------------GFEPQIRKIVKEVPA----------------------------------------- 194 (547)
Q Consensus 174 H~ll~-~-----------------g~~~~i~~i~~~l~~----------------------------------------- 194 (547)
|.++= . .+...+..++..+..
T Consensus 252 DSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~ 331 (656)
T PRK12898 252 DSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331 (656)
T ss_pred cceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHH
Confidence 96551 0 000001111110000
Q ss_pred ------------------------------------------------------------C----------------ceE
Q 008956 195 ------------------------------------------------------------R----------------RQT 198 (547)
Q Consensus 195 ------------------------------------------------------------~----------------~q~ 198 (547)
. .++
T Consensus 332 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl 411 (656)
T PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411 (656)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHH
Confidence 0 145
Q ss_pred EEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhc-CCCCeEEEEcCChHHHH
Q 008956 199 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCD 277 (547)
Q Consensus 199 l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~ 277 (547)
..||||.+....++...+..++..+...... .....+.+......+|...|..++... ..+.++||||+|++.++
T Consensus 412 ~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~----~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRPS----QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred hcccCcChHHHHHHHHHHCCCeEEeCCCCCc----cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 5778888776666766666666555443322 111233344556677888888888764 34578999999999999
Q ss_pred HHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCC---Ccc-----EEEEcCCCCChhhhHh
Q 008956 278 QLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIK---DIR-----VVVNYDFPTGVEDYVH 348 (547)
Q Consensus 278 ~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip---~v~-----~VI~~d~p~s~~~yiQ 348 (547)
.+++.|.+. +++..+|+++++ ++..+..|..+...|||||++++||+||+ +|. +||++++|.+...|+|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 999999865 899999998654 44555556666667999999999999999 665 9999999999999999
Q ss_pred hhccccCCCCceEEEEEecCCCh
Q 008956 349 RIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 349 riGR~gR~g~~g~~~~l~~~~~~ 371 (547)
|+|||||.|.+|.+++|++..|.
T Consensus 566 r~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred hcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999987654
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.5e-37 Score=318.57 Aligned_cols=300 Identities=20% Similarity=0.193 Sum_probs=208.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCC-------
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAP------- 129 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~------- 129 (547)
++++.+|||||||++|+++++..+... ...+++|++|+++|+.|+++.+..++... +..+++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-----~~~~ii~v~P~~~L~~q~~~~l~~~f~~~---~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-----KADRVIIALPTRATINAMYRRAKELFGSN---LGLLHSSSSFKRIKEM 72 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-----CCCeEEEEeehHHHHHHHHHHHHHHhCcc---cEEeeccHHHHHHhcc
Confidence 589999999999999999999875431 24599999999999999999999985431 111222111
Q ss_pred ----Ch-hhHHHh------hCCCcEEEECcHHHHHHHhcCC----cCC--CCeeEEEEecccccccCCcHHHHHHHHHhC
Q 008956 130 ----KG-PQLKDI------DRGVDIVVATPGRLNDILEMRR----ISL--NQVSYLVLDEADRMLDMGFEPQIRKIVKEV 192 (547)
Q Consensus 130 ----~~-~~~~~~------~~~~~IlV~Tp~~L~~~l~~~~----~~l--~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l 192 (547)
.. ...... ....+|+|+||+.+...+.... ..+ -..++|||||||.+.++.+.. +..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l 151 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVL 151 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHH
Confidence 00 001111 1236899999999988765411 111 123789999999998765433 55555555
Q ss_pred C-CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEE--EcCccchHHHHHHHHHhcCCCCeEEEE
Q 008956 193 P-ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIE--VLAPMDKHRRLEQILRSQEPGSKIIVF 269 (547)
Q Consensus 193 ~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~--~~~~~~k~~~l~~~l~~~~~~~k~IVF 269 (547)
+ ...|+++||||+|..+.+++......+....... .. ......+.+. ......+...+..+++....+.++|||
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDL-KE--ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCC-cc--ccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 4 4689999999999777776665433221111110 00 0000111111 112234455666666655566899999
Q ss_pred cCChHHHHHHHHHHhccc---ceEEEcCCCCHHHHHHH----HHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCC
Q 008956 270 CSTKKMCDQLARNLTRQF---GAAAIHGDKSQSERDYV----LNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTG 342 (547)
Q Consensus 270 ~~s~~~~~~l~~~L~~~~---~~~~ihg~~~~~~R~~~----l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s 342 (547)
|++++.|+.+++.|++.. .+..+||.+++.+|..+ ++.|++++..|||||+++++||||+ +++||++..|
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~-- 305 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP-- 305 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--
Confidence 999999999999998653 48999999999999764 8899999999999999999999995 7889988776
Q ss_pred hhhhHhhhccccCCCCc----eEEEEEecCCCh
Q 008956 343 VEDYVHRIGRTGRAGAT----GVAYTFFGDQDS 371 (547)
Q Consensus 343 ~~~yiQriGR~gR~g~~----g~~~~l~~~~~~ 371 (547)
+++|+||+||+||.|++ +.+++|....+.
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 78999999999998854 366766654443
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=333.47 Aligned_cols=333 Identities=24% Similarity=0.284 Sum_probs=257.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHH
Q 008956 23 TGFPPELLREVHNAGFSSPTPIQAQSWPIALQ-SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE 101 (547)
Q Consensus 23 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~-g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~ 101 (547)
..+++.+.+.+...++.++++.|+.++...+. ++|+||++|||||||+++++.++..+.+. +.++|+|||+++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------~~k~vYivPlkA 87 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG------GGKVVYIVPLKA 87 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc------CCcEEEEeChHH
Confidence 44788888888888998999999999977655 49999999999999999999999888762 469999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCc
Q 008956 102 LATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF 181 (547)
Q Consensus 102 L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~ 181 (547)
||.+.+++|+ .....++++...+|+.+... +...+++|+|+||+++..++.+....+..+++|||||+|.+.+...
T Consensus 88 La~Ek~~~~~-~~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 88 LAEEKYEEFS-RLEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHHhh-hHHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCccc
Confidence 9999999999 34456899999999887443 2234589999999999988888777788999999999998877656
Q ss_pred HHHHHHHHHhCCC---CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccch-------HH
Q 008956 182 EPQIRKIVKEVPA---RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDK-------HR 251 (547)
Q Consensus 182 ~~~i~~i~~~l~~---~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k-------~~ 251 (547)
.+.+..|+..... ..|++.+|||+|+ ..+++..+-.++. ...-....+.......+.+.......| ..
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 6666666655433 3799999999984 4444444333333 222223333333334444444433322 34
Q ss_pred HHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhc--------------------------------------ccceEEEc
Q 008956 252 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR--------------------------------------QFGAAAIH 293 (547)
Q Consensus 252 ~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~--------------------------------------~~~~~~ih 293 (547)
.+..++.....+.++||||++++.+...++.|.+ ..+++.+|
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 4555555667788999999999999988888862 01467899
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEE----EcC-----CCCChhhhHhhhccccCCC--CceEE
Q 008956 294 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV----NYD-----FPTGVEDYVHRIGRTGRAG--ATGVA 362 (547)
Q Consensus 294 g~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI----~~d-----~p~s~~~yiQriGR~gR~g--~~g~~ 362 (547)
++++.++|..+++.|+.|.++||+||++++.|+|+|.-++|| .|+ .+.++-+++|++|||||.| ..|.+
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~ 401 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEA 401 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcE
Confidence 999999999999999999999999999999999999987777 455 4457889999999999987 44666
Q ss_pred EEEec
Q 008956 363 YTFFG 367 (547)
Q Consensus 363 ~~l~~ 367 (547)
+++.+
T Consensus 402 ~i~~~ 406 (766)
T COG1204 402 IILAT 406 (766)
T ss_pred EEEec
Confidence 66663
No 65
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=4.6e-35 Score=305.75 Aligned_cols=357 Identities=23% Similarity=0.299 Sum_probs=284.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 23 TGFPPELLREVHNAGFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 23 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g------~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
++....+++.+...=-.+||..|++++..|... .+-|++++.|||||++++++++..+.. |.++.++
T Consensus 245 ~~~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-------G~Q~ALM 317 (677)
T COG1200 245 LPANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-------GYQAALM 317 (677)
T ss_pred CCccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-------CCeeEEe
Confidence 344556667665554459999999999999874 357999999999999999999998877 7899999
Q ss_pred cCcHHHHHHHHHHHHHhccCCceEEEEecCCCC---ChhhHHHhhCC-CcEEEECcHHHHHHHhcCCcCCCCeeEEEEec
Q 008956 97 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAP---KGPQLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDE 172 (547)
Q Consensus 97 ~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~---~~~~~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 172 (547)
+||.-||.|.++.+.+++...++.+..++|... +.+.+..+..+ .+|+|+|+.-+.+ .+.+.++.++|+||
T Consensus 318 APTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLVIiDE 392 (677)
T COG1200 318 APTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLVIIDE 392 (677)
T ss_pred ccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEEEEec
Confidence 999999999999999999999999999998665 34455666776 9999999765544 77899999999999
Q ss_pred ccccccCCcHHHHHHHHHhCCC-CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHH
Q 008956 173 ADRMLDMGFEPQIRKIVKEVPA-RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 251 (547)
Q Consensus 173 aH~ll~~g~~~~i~~i~~~l~~-~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 251 (547)
-|| |.-.-+..+...-. ...+|+|||||-+....+..-- .++++..++.+....-.+. .++.......
T Consensus 393 QHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fg-----DldvS~IdElP~GRkpI~T-~~i~~~~~~~ 461 (677)
T COG1200 393 QHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFG-----DLDVSIIDELPPGRKPITT-VVIPHERRPE 461 (677)
T ss_pred ccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhc-----cccchhhccCCCCCCceEE-EEeccccHHH
Confidence 999 66666666666555 6789999999876555443221 2233334444444222222 2333344555
Q ss_pred HHHHHHHhcCCCCeEEEEcCChHH--------HHHHHHHHhcc---cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc
Q 008956 252 RLEQILRSQEPGSKIIVFCSTKKM--------CDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 320 (547)
Q Consensus 252 ~l~~~l~~~~~~~k~IVF~~s~~~--------~~~l~~~L~~~---~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~ 320 (547)
.+..+.++...+.++.+.|+-+++ +..+++.|+.. +.+..+||.|+.+++++++++|++|+++|||||.
T Consensus 462 v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT 541 (677)
T COG1200 462 VYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT 541 (677)
T ss_pred HHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 555555666788999999987654 45566666643 4589999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCC-ChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHHHHHcC
Q 008956 321 VAARGLDIKDIRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRG 399 (547)
Q Consensus 321 ~~~~GiDip~v~~VI~~d~p~-s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~l~~~~ 399 (547)
|++.|||+|+++++|+.+.-. ...+..|..||+||......|++++.+......+..++++.+..+.+...-.||..|+
T Consensus 542 VIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLklRG 621 (677)
T COG1200 542 VIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKLRG 621 (677)
T ss_pred EEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHhccC
Confidence 999999999999988888754 8899999999999999999999999988878888999999999999999999999988
Q ss_pred CCC
Q 008956 400 GGM 402 (547)
Q Consensus 400 ~g~ 402 (547)
.|-
T Consensus 622 pGe 624 (677)
T COG1200 622 PGE 624 (677)
T ss_pred Ccc
Confidence 653
No 66
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.3e-34 Score=327.66 Aligned_cols=325 Identities=28% Similarity=0.342 Sum_probs=239.2
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
+..++++||.+++..++.+ ++|+++|||+|||+++++++...+.. .+.++|||+||++|+.||.+.++++...
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 4458999999999988887 99999999999999998888777632 2469999999999999999999998765
Q ss_pred CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCc
Q 008956 117 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 196 (547)
Q Consensus 117 ~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~ 196 (547)
....+..+.|+....+ ...+...++|+|+||+.+...+....+.+.++++|||||||++........+...........
T Consensus 85 ~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 4456677777665443 334445679999999999888877788888999999999999876544444444444445567
Q ss_pred eEEEEeccCcHH---HHHHHHHhcCCCeEE--------------------EeCcccc-----------------------
Q 008956 197 QTLMYTATWPRE---VRKIAADLLVNPVQV--------------------NIGNVDE----------------------- 230 (547)
Q Consensus 197 q~l~~SAT~~~~---~~~~~~~~l~~~~~i--------------------~i~~~~~----------------------- 230 (547)
++++||||+... +..++..+......+ .+.....
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 799999997322 222222221111000 0000000
Q ss_pred -cccc-------------cceeEE--------------------------------------------------------
Q 008956 231 -LAAN-------------KAITQH-------------------------------------------------------- 240 (547)
Q Consensus 231 -~~~~-------------~~i~~~-------------------------------------------------------- 240 (547)
.... ..+...
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 0000 000000
Q ss_pred ----------------EEEcCccchHHHHHHHHHhc---CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCC-----
Q 008956 241 ----------------IEVLAPMDKHRRLEQILRSQ---EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGD----- 295 (547)
Q Consensus 241 ----------------~~~~~~~~k~~~l~~~l~~~---~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~----- 295 (547)
........|...|.+++++. ..+.++||||++++.|+.+++.|... +.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 00011223455555565542 45679999999999999999999654 778888876
Q ss_pred ---CCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCC
Q 008956 296 ---KSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 370 (547)
Q Consensus 296 ---~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~ 370 (547)
+++.+|..+++.|++++++|||||+++++|+|+|++++||+||+|+++..|+||+||++|.+. +.++.++....
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999865 77888886544
No 67
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=297.16 Aligned_cols=349 Identities=22% Similarity=0.299 Sum_probs=270.2
Q ss_pred eEEEEEecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCchHHHHHHHHHHHHhh
Q 008956 3 FLLLIFQGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLGYLLPGFIHLK 81 (547)
Q Consensus 3 ~~~~~~~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~g~~vlv~a~TGsGKT~~~l~~~l~~l~ 81 (547)
++.|+...++++ ....+++.+|+++.+-|+..|+.++.|+|.-++.. +++|+|.+|+.+|+||||++.-++-+..+.
T Consensus 181 yD~v~a~~~~~~--r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l 258 (830)
T COG1202 181 YDEVTAETDEVE--RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL 258 (830)
T ss_pred ceeeeccccccc--cccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHH
Confidence 344444444442 34678899999999999999999999999999976 788999999999999999998888777665
Q ss_pred hccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh----HHHhhCCCcEEEECcHHHHHHHhc
Q 008956 82 RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ----LKDIDRGVDIVVATPGRLNDILEM 157 (547)
Q Consensus 82 ~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~----~~~~~~~~~IlV~Tp~~L~~~l~~ 157 (547)
. .+.+.|+|+|..+||.|-+++|+.-....++.+..-+|-...... .......+||||+||+-+..++..
T Consensus 259 ~------~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt 332 (830)
T COG1202 259 S------GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT 332 (830)
T ss_pred h------CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc
Confidence 5 367999999999999999999998777778877766664433222 122233589999999999777776
Q ss_pred CCcCCCCeeEEEEecccccccCCcHHHHHHH---HHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccc
Q 008956 158 RRISLNQVSYLVLDEADRMLDMGFEPQIRKI---VKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAAN 234 (547)
Q Consensus 158 ~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i---~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~ 234 (547)
+ ..+.++..+||||+|.+.+....+.+.-+ +..+-+..|+|.+|||.-+ -.+++..+-...+.++- .+
T Consensus 333 g-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV~y~~-------RP 403 (830)
T COG1202 333 G-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-PEELAKKLGAKLVLYDE-------RP 403 (830)
T ss_pred C-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeEeecC-------CC
Confidence 5 67899999999999987775544444333 3445568999999999753 33455555433333321 12
Q ss_pred cceeEEEEEcC-ccchHHHHHHHHHhc-------CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHH
Q 008956 235 KAITQHIEVLA-PMDKHRRLEQILRSQ-------EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVL 305 (547)
Q Consensus 235 ~~i~~~~~~~~-~~~k~~~l~~~l~~~-------~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l 305 (547)
..+..|+.+.. ..+|.+.+..+.+.. .-..++|||++|++.|..++++|... +++..+|++++..+|..+.
T Consensus 404 VplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE 483 (830)
T COG1202 404 VPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVE 483 (830)
T ss_pred CChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHH
Confidence 22445555554 677888777776542 22358999999999999999999854 8999999999999999999
Q ss_pred HHhhcCCCcEEEEccccccCCCCCCccEEE---EcCCCC-ChhhhHhhhccccCCC--CceEEEEEecC
Q 008956 306 NQFRAGRSPVLVATDVAARGLDIKDIRVVV---NYDFPT-GVEDYVHRIGRTGRAG--ATGVAYTFFGD 368 (547)
Q Consensus 306 ~~F~~g~~~ILVaT~~~~~GiDip~v~~VI---~~d~p~-s~~~yiQriGR~gR~g--~~g~~~~l~~~ 368 (547)
.+|.++++.++|+|.+++-|+|+|...+|+ -.+.-| ++.+|.|+.||+||.+ ..|.+|+++.+
T Consensus 484 ~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 484 RAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred HHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 999999999999999999999999866655 245556 8999999999999986 56888888864
No 68
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8e-35 Score=317.13 Aligned_cols=318 Identities=19% Similarity=0.237 Sum_probs=232.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
|. .|+++|..++..+++|+ |+.+.||+|||++|++|++..... ++.++|++||++||.|.++++..+...
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-------G~~v~VvTpt~~LA~qd~e~~~~l~~~ 145 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-------GKGVHLITVNDYLAKRDAEEMGQVYEF 145 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-------CCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 55 89999999999888876 999999999999999999866655 779999999999999999999999999
Q ss_pred CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcCC------cCCCCeeEEEEecccccccC----------
Q 008956 117 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLNQVSYLVLDEADRMLDM---------- 179 (547)
Q Consensus 117 ~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEaH~ll~~---------- 179 (547)
.++.+.+++++.+.....+ ....|+|+++||++| .|+|.... ..+..+.++||||||.|+=.
T Consensus 146 lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg 224 (790)
T PRK09200 146 LGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISG 224 (790)
T ss_pred cCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeC
Confidence 9999999999887433333 335699999999999 56665432 34578899999999987621
Q ss_pred ------CcHHHHHHHHHhCCCC--------ceEEE---------------------------------------------
Q 008956 180 ------GFEPQIRKIVKEVPAR--------RQTLM--------------------------------------------- 200 (547)
Q Consensus 180 ------g~~~~i~~i~~~l~~~--------~q~l~--------------------------------------------- 200 (547)
.+...+..++..+... .+.+.
T Consensus 225 ~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~d 304 (790)
T PRK09200 225 KPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVD 304 (790)
T ss_pred CCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCc
Confidence 1122233333333211 11222
Q ss_pred ----------------------------------------------------------------EeccCcHHHHHHHHHh
Q 008956 201 ----------------------------------------------------------------YTATWPREVRKIAADL 216 (547)
Q Consensus 201 ----------------------------------------------------------------~SAT~~~~~~~~~~~~ 216 (547)
||.|...+-.++.. .
T Consensus 305 YiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~-~ 383 (790)
T PRK09200 305 YIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE-V 383 (790)
T ss_pred EEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHH-H
Confidence 22221111111111 0
Q ss_pred cCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcC
Q 008956 217 LVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 294 (547)
Q Consensus 217 l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg 294 (547)
. +-..+.+.... ..... ......+....+|...+...+... ..+.++||||+|++.++.++..|.+. +++..+|+
T Consensus 384 Y-~l~v~~IPt~k-p~~r~-d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 384 Y-NMEVVQIPTNR-PIIRI-DYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred h-CCcEEECCCCC-Ccccc-cCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 0 00111111100 00000 011123345567778787777653 45789999999999999999999875 99999999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEEccccccCCCC---CCcc-----EEEEcCCCCChhhhHhhhccccCCCCceEEEEEe
Q 008956 295 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDI---KDIR-----VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFF 366 (547)
Q Consensus 295 ~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDi---p~v~-----~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~ 366 (547)
++.+.++..+...++.| .|+|||++++||+|| |.|. +||++++|.+...|+||+|||||.|.+|.+++|+
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99998888888777765 799999999999999 6898 9999999999999999999999999999999999
Q ss_pred cCCCh
Q 008956 367 GDQDS 371 (547)
Q Consensus 367 ~~~~~ 371 (547)
+..|.
T Consensus 539 s~eD~ 543 (790)
T PRK09200 539 SLEDD 543 (790)
T ss_pred cchHH
Confidence 87654
No 69
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1e-34 Score=332.66 Aligned_cols=286 Identities=22% Similarity=0.356 Sum_probs=214.9
Q ss_pred HHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 008956 33 VHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 112 (547)
Q Consensus 33 l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~ 112 (547)
+......+||++|+.+++.++.+++++++||||+|||+ |.+|+...+.. .++++|||+||++|+.|+++.+.+
T Consensus 71 f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~------~g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 71 FKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK------KGKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh------cCCeEEEEeCHHHHHHHHHHHHHH
Confidence 34444558999999999999999999999999999997 55666555432 157999999999999999999999
Q ss_pred hccCCceEEE---EecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccccc-------
Q 008956 113 FGKSSRISCT---CLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD------- 178 (547)
Q Consensus 113 ~~~~~~i~~~---~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~------- 178 (547)
+....++.+. +++|+.+..++ +..+.. +++|+|+||++|.+.+.. +.. ++++|||||||+|++
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~k~vd~ 220 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKASKNVDK 220 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhccccHHH
Confidence 9876655443 45677665543 344444 499999999999987764 222 899999999999998
Q ss_pred ----CCcHHH-HHHHH----------------------HhCCCCce--EEEEecc-CcHHHHHHHHHhcCCCeEEEeCcc
Q 008956 179 ----MGFEPQ-IRKIV----------------------KEVPARRQ--TLMYTAT-WPREVRKIAADLLVNPVQVNIGNV 228 (547)
Q Consensus 179 ----~g~~~~-i~~i~----------------------~~l~~~~q--~l~~SAT-~~~~~~~~~~~~l~~~~~i~i~~~ 228 (547)
+||..+ +..++ ..++..+| ++++||| +|..+.. .++.+...+.+...
T Consensus 221 il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~ 297 (1171)
T TIGR01054 221 LLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGG 297 (1171)
T ss_pred HHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCc
Confidence 788764 44433 23455555 5678999 5665542 22334444544433
Q ss_pred cccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCCh---HHHHHHHHHHhcc-cceEEEcCCCCHHHHHHH
Q 008956 229 DELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTK---KMCDQLARNLTRQ-FGAAAIHGDKSQSERDYV 304 (547)
Q Consensus 229 ~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~---~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~ 304 (547)
. .....+.+.+..... +...+.++++.. +..+||||+++ +.|+.+++.|++. +.+..+||++++ .+
T Consensus 298 ~--~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~ 367 (1171)
T TIGR01054 298 S--DTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----ED 367 (1171)
T ss_pred c--ccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HH
Confidence 2 223345555443322 245567777665 35789999999 9999999999875 899999999974 68
Q ss_pred HHHhhcCCCcEEEE----ccccccCCCCCC-ccEEEEcCCCC
Q 008956 305 LNQFRAGRSPVLVA----TDVAARGLDIKD-IRVVVNYDFPT 341 (547)
Q Consensus 305 l~~F~~g~~~ILVa----T~~~~~GiDip~-v~~VI~~d~p~ 341 (547)
++.|++|+++|||| |++++||||+|+ +++|||||+|.
T Consensus 368 l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 368 YEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99999999999999 499999999999 89999999995
No 70
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.6e-34 Score=311.84 Aligned_cols=319 Identities=20% Similarity=0.259 Sum_probs=222.6
Q ss_pred CCCcHHHHHHHHHHhC-C--CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 39 SSPTPIQAQSWPIALQ-S--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~-g--~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
..|+|||.+++..++. + +..++++|||+|||++.+..+. .+ ..++|||||+.+|+.||.+++.++..
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l---------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV---------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh---------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 4689999999999884 3 4689999999999998775433 22 23799999999999999999999875
Q ss_pred CCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhc--------CCcCCCCeeEEEEecccccccCCcHHHHHH
Q 008956 116 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM--------RRISLNQVSYLVLDEADRMLDMGFEPQIRK 187 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~--------~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~ 187 (547)
.....+..++++.... ......|+|+|++.+.....+ ..+....+++||+||||++. .+.+..
T Consensus 324 l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~fr~ 394 (732)
T TIGR00603 324 IDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMFRR 394 (732)
T ss_pred CCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHHHH
Confidence 5445555555543211 122368999999987532211 12223568999999999974 455666
Q ss_pred HHHhCCCCceEEEEeccCcHHHHHHH-HHhcCCCeEEEeCcccccccccceeE------EEE------------------
Q 008956 188 IVKEVPARRQTLMYTATWPREVRKIA-ADLLVNPVQVNIGNVDELAANKAITQ------HIE------------------ 242 (547)
Q Consensus 188 i~~~l~~~~q~l~~SAT~~~~~~~~~-~~~l~~~~~i~i~~~~~~~~~~~i~~------~~~------------------ 242 (547)
++..++. ...|++||||.++..... -.++..|..+.....+ +.....+.. .+.
T Consensus 395 il~~l~a-~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~e-Li~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 395 VLTIVQA-HCKLGLTATLVREDDKITDLNFLIGPKLYEANWME-LQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred HHHhcCc-CcEEEEeecCcccCCchhhhhhhcCCeeeecCHHH-HHhCCccccceEEEEEecCCHHHHHHHHHhcchhhh
Confidence 7776654 457999999875432211 1222334433322111 111110000 000
Q ss_pred --EcCccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcccceEEEcCCCCHHHHHHHHHHhhcC-CCcEEEE
Q 008956 243 --VLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAG-RSPVLVA 318 (547)
Q Consensus 243 --~~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg~~~~~~R~~~l~~F~~g-~~~ILVa 318 (547)
......|...+..+++.. ..+.++||||.+...++.+++.|. +..+||++++.+|..+++.|+.+ .+++||+
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG----KPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----CceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 011123444445555543 366899999999999999988873 56799999999999999999875 7899999
Q ss_pred ccccccCCCCCCccEEEEcCCCC-ChhhhHhhhccccCCCCceEE-------EEEecCCC--hHHHHHHHHHHH
Q 008956 319 TDVAARGLDIKDIRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVA-------YTFFGDQD--SRYASDLIKLLE 382 (547)
Q Consensus 319 T~~~~~GiDip~v~~VI~~d~p~-s~~~yiQriGR~gR~g~~g~~-------~~l~~~~~--~~~~~~l~~~l~ 382 (547)
|+++.+|||+|++++||+++.|. |...|+||+||++|.+..+.+ |.|++... ..+.....++|.
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 99999999999999999999985 999999999999999876654 77777544 345555555554
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=4.5e-34 Score=293.25 Aligned_cols=290 Identities=18% Similarity=0.220 Sum_probs=201.1
Q ss_pred HHHHHHHHHhCCCc--EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc----CC
Q 008956 44 IQAQSWPIALQSRD--IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK----SS 117 (547)
Q Consensus 44 ~Q~~~i~~il~g~~--vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~----~~ 117 (547)
+|.++++++.++++ ++++||||+|||.+|++|++.. ..+++|++|+++|+.|+++.++++.. ..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~ 70 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPER 70 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCC
Confidence 69999999999874 7889999999999999998742 23689999999999999999988863 23
Q ss_pred ceEEEEecCCCCCh--hh----------------HH-Hh-hCCCcEEEECcHHHHHHHhcCC-----c---CCCCeeEEE
Q 008956 118 RISCTCLYGGAPKG--PQ----------------LK-DI-DRGVDIVVATPGRLNDILEMRR-----I---SLNQVSYLV 169 (547)
Q Consensus 118 ~i~~~~~~g~~~~~--~~----------------~~-~~-~~~~~IlV~Tp~~L~~~l~~~~-----~---~l~~~~~lV 169 (547)
++.+..+.|....+ .. ++ .+ ...++|++|||+.|..++.... . .+..+++||
T Consensus 71 ~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV 150 (357)
T TIGR03158 71 DVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVI 150 (357)
T ss_pred CceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEE
Confidence 45666666642221 00 00 11 2357899999999976654311 1 146899999
Q ss_pred EecccccccCCc-----HHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh--cCCCeEEEeCcc-----c------cc
Q 008956 170 LDEADRMLDMGF-----EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL--LVNPVQVNIGNV-----D------EL 231 (547)
Q Consensus 170 lDEaH~ll~~g~-----~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~--l~~~~~i~i~~~-----~------~~ 231 (547)
|||+|.+..+.. ......++.......+++++|||+++.+.+.+... +..+... +... + ..
T Consensus 151 ~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 151 FDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEADN 229 (357)
T ss_pred EecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhccc
Confidence 999998764331 12233344444445799999999999888877765 3333222 1111 0 00
Q ss_pred c------cccceeEEEEEcCccchHHHHHHHHHhc------CCCCeEEEEcCChHHHHHHHHHHhcc---cceEEEcCCC
Q 008956 232 A------ANKAITQHIEVLAPMDKHRRLEQILRSQ------EPGSKIIVFCSTKKMCDQLARNLTRQ---FGAAAIHGDK 296 (547)
Q Consensus 232 ~------~~~~i~~~~~~~~~~~k~~~l~~~l~~~------~~~~k~IVF~~s~~~~~~l~~~L~~~---~~~~~ihg~~ 296 (547)
. .-..+.+.+.. ....+...+..+++.. ..+.++||||+|++.++.+++.|++. +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 0 00123333322 3333443333332211 34579999999999999999999863 5678899999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhcccc
Q 008956 297 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTG 354 (547)
Q Consensus 297 ~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~g 354 (547)
++.+|+++ .+.+|||||+++++|||+|.+ +|| ++ |.++++|+||+||+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99998755 368899999999999999986 555 45 889999999999996
No 72
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=3.8e-34 Score=308.96 Aligned_cols=319 Identities=20% Similarity=0.207 Sum_probs=224.3
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 118 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~ 118 (547)
..++|+|.+++..+..++..|+.++||+|||++|++|++..... ++.++||+|+++||.|+++++..+....+
T Consensus 67 lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 67 LGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT-------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred cCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc-------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 34566666666666666668999999999999999998766544 55799999999999999999999988888
Q ss_pred eEEEEecCCCC---ChhhHHHhhCCCcEEEECcHHH-HHHHhcC------CcCCCCeeEEEEecccccccCC--------
Q 008956 119 ISCTCLYGGAP---KGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRMLDMG-------- 180 (547)
Q Consensus 119 i~~~~~~g~~~---~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEaH~ll~~g-------- 180 (547)
+.+.+.+++.. .....+....+|+|+++||++| .++|... ...+..+.++|+||||.|+-..
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 98887776522 2233344446799999999999 5666432 3446789999999999886311
Q ss_pred --------cHHHHHHHHHhCCCC--------ceEE---------------------------------------------
Q 008956 181 --------FEPQIRKIVKEVPAR--------RQTL--------------------------------------------- 199 (547)
Q Consensus 181 --------~~~~i~~i~~~l~~~--------~q~l--------------------------------------------- 199 (547)
+...+..++..+... .+.+
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 112222333333221 1122
Q ss_pred ----------------------------------------------------------------EEeccCcHHHHHHHHH
Q 008956 200 ----------------------------------------------------------------MYTATWPREVRKIAAD 215 (547)
Q Consensus 200 ----------------------------------------------------------------~~SAT~~~~~~~~~~~ 215 (547)
.||+|...+..++..-
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 2222221111111111
Q ss_pred hcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEc
Q 008956 216 LLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIH 293 (547)
Q Consensus 216 ~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ih 293 (547)
+ . -..+.+........ . ......+....+|...+...+.+. ..+.++||||+|++.++.++..|.+. +++..+|
T Consensus 380 Y-~-l~v~~IPt~kp~~r-~-d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~ 455 (762)
T TIGR03714 380 Y-S-LSVVKIPTNKPIIR-I-DYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLN 455 (762)
T ss_pred h-C-CCEEEcCCCCCeee-e-eCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEec
Confidence 0 0 00011111000000 0 011123445566777777777653 56789999999999999999999865 8999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCC---------CccEEEEcCCCCChhhhHhhhccccCCCCceEEEE
Q 008956 294 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIK---------DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYT 364 (547)
Q Consensus 294 g~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip---------~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~ 364 (547)
+++++.++..+...++.| .|+|||++++||+||+ ++.+|+++++|....+ +||+|||||.|.+|.+++
T Consensus 456 a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 456 AQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred CCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEE
Confidence 999999988887777666 6999999999999999 8999999999998877 999999999999999999
Q ss_pred EecCCCh
Q 008956 365 FFGDQDS 371 (547)
Q Consensus 365 l~~~~~~ 371 (547)
|++..|.
T Consensus 533 ~is~eD~ 539 (762)
T TIGR03714 533 FVSLEDD 539 (762)
T ss_pred EEccchh
Confidence 9987654
No 73
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.9e-34 Score=302.95 Aligned_cols=337 Identities=25% Similarity=0.256 Sum_probs=236.5
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHH
Q 008956 22 ATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE 101 (547)
Q Consensus 22 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~ 101 (547)
...++++....+.--....++.||.+.+..+| ++++||++|||+|||.++...++.++.... ..++|+++|++-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p-----~~KiVF~aP~~p 117 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP-----KGKVVFLAPTRP 117 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC-----cceEEEeeCCch
Confidence 34466666666655566799999999999999 999999999999999999998888887743 359999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcC-CCCeeEEEEecccccccCC
Q 008956 102 LATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRIS-LNQVSYLVLDEADRMLDMG 180 (547)
Q Consensus 102 L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~-l~~~~~lVlDEaH~ll~~g 180 (547)
|+.|+...+..++.. ..+....++.........+-..++|+|+||+.|.+.|...... ++.+.+|||||||+.....
T Consensus 118 Lv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~ 195 (746)
T KOG0354|consen 118 LVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNH 195 (746)
T ss_pred HHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccc
Confidence 999999888777765 4445555553322222345556899999999999888765443 5899999999999987665
Q ss_pred cHHHHH-HHHHhCCCCceEEEEeccCcHHHHHH---HHHhcCC----------------------C--------------
Q 008956 181 FEPQIR-KIVKEVPARRQTLMYTATWPREVRKI---AADLLVN----------------------P-------------- 220 (547)
Q Consensus 181 ~~~~i~-~i~~~l~~~~q~l~~SAT~~~~~~~~---~~~~l~~----------------------~-------------- 220 (547)
-...+. ..+..-....|+|++|||+......+ +..+..+ |
T Consensus 196 ~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f 275 (746)
T KOG0354|consen 196 PYNNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPF 275 (746)
T ss_pred cHHHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhH
Confidence 444444 55544444459999999976332221 1111000 0
Q ss_pred --------------eEEEeCccc------------ccccccceeEE--E------------------E------------
Q 008956 221 --------------VQVNIGNVD------------ELAANKAITQH--I------------------E------------ 242 (547)
Q Consensus 221 --------------~~i~i~~~~------------~~~~~~~i~~~--~------------------~------------ 242 (547)
..+.+.... ....+..-.+. + .
T Consensus 276 ~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~ 355 (746)
T KOG0354|consen 276 GMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFY 355 (746)
T ss_pred HHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhc
Confidence 000000000 00000000000 0 0
Q ss_pred --------------------------------Ec--CccchHHHHHHHHHh---cCCCCeEEEEcCChHHHHHHHHHHhc
Q 008956 243 --------------------------------VL--APMDKHRRLEQILRS---QEPGSKIIVFCSTKKMCDQLARNLTR 285 (547)
Q Consensus 243 --------------------------------~~--~~~~k~~~l~~~l~~---~~~~~k~IVF~~s~~~~~~l~~~L~~ 285 (547)
.. ....|.+.+.+++.+ ..+..++||||.++..|..|..+|.+
T Consensus 356 ~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~ 435 (746)
T KOG0354|consen 356 EEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQ 435 (746)
T ss_pred cccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHh
Confidence 00 011233334444432 34557999999999999999999974
Q ss_pred c----cceEEE--------cCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccc
Q 008956 286 Q----FGAAAI--------HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRT 353 (547)
Q Consensus 286 ~----~~~~~i--------hg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~ 353 (547)
. +....+ ..+|++.++..+++.|++|.++|||||+++++||||+.|+.||-||.-.++..++||.||
T Consensus 436 ~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR- 514 (746)
T KOG0354|consen 436 LHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR- 514 (746)
T ss_pred hhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-
Confidence 2 111111 248999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEEecC
Q 008956 354 GRAGATGVAYTFFGD 368 (547)
Q Consensus 354 gR~g~~g~~~~l~~~ 368 (547)
||+ +.|.++++++.
T Consensus 515 gRa-~ns~~vll~t~ 528 (746)
T KOG0354|consen 515 GRA-RNSKCVLLTTG 528 (746)
T ss_pred ccc-cCCeEEEEEcc
Confidence 999 56888888873
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.2e-33 Score=303.24 Aligned_cols=316 Identities=19% Similarity=0.212 Sum_probs=228.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.|+++|..+...+++|+ |+.++||+|||++|++|++..... +..++||+||++||.|.++++..+....++
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-------G~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-------GKGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-------CCCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 78888988888887776 999999999999999999654444 457999999999999999999999999999
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcC------CcCCCCeeEEEEeccccccc-CCc----------
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRMLD-MGF---------- 181 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEaH~ll~-~g~---------- 181 (547)
++.+++++.+..+.... ..++|+++||.+| .+++... .+.+..+.++||||+|+|+- ...
T Consensus 127 sv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~ 204 (745)
T TIGR00963 127 SVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAE 204 (745)
T ss_pred eEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCC
Confidence 99999998775443333 3589999999999 8888766 34578899999999998763 110
Q ss_pred -----HHHHHHHHHhCCC--------CceEE-------------------------------------------------
Q 008956 182 -----EPQIRKIVKEVPA--------RRQTL------------------------------------------------- 199 (547)
Q Consensus 182 -----~~~i~~i~~~l~~--------~~q~l------------------------------------------------- 199 (547)
......+...+.. ..+.+
T Consensus 205 ~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 284 (745)
T TIGR00963 205 KSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIV 284 (745)
T ss_pred CchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 0011112222211 01111
Q ss_pred ------------------------------------------------------------EEeccCcHHHHHHHHHhcCC
Q 008956 200 ------------------------------------------------------------MYTATWPREVRKIAADLLVN 219 (547)
Q Consensus 200 ------------------------------------------------------------~~SAT~~~~~~~~~~~~l~~ 219 (547)
.||.|...+..++...+-.
T Consensus 285 ~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l- 363 (745)
T TIGR00963 285 RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL- 363 (745)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC-
Confidence 2222221111111111100
Q ss_pred CeEEEeCcccccccccceeEEEEEcCccchHHHHHHHH-HhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCC
Q 008956 220 PVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKS 297 (547)
Q Consensus 220 ~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l-~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~ 297 (547)
+ .+.+...... ..... ....+....+|...+...+ .....+.++||||+++..++.+++.|.+. +++..+|++
T Consensus 364 ~-vv~IPtnkp~-~R~d~-~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 364 E-VVVVPTNRPV-IRKDL-SDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred C-EEEeCCCCCe-eeeeC-CCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 0 0101100000 00000 1122333445666665544 34467889999999999999999999875 899999998
Q ss_pred HHHHHHHHHHhhcCCCcEEEEccccccCCCCCC-------ccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCC
Q 008956 298 QSERDYVLNQFRAGRSPVLVATDVAARGLDIKD-------IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 370 (547)
Q Consensus 298 ~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~-------v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~ 370 (547)
+.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.+...|.|++||+||.|.+|.+..|++..|
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 889999999999999999999999999999998 5599999999999999999999999999999999998776
Q ss_pred hH
Q 008956 371 SR 372 (547)
Q Consensus 371 ~~ 372 (547)
.-
T Consensus 519 ~l 520 (745)
T TIGR00963 519 NL 520 (745)
T ss_pred HH
Confidence 53
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-33 Score=310.08 Aligned_cols=331 Identities=23% Similarity=0.322 Sum_probs=257.8
Q ss_pred HHHHHH-HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHH
Q 008956 29 LLREVH-NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQ 107 (547)
Q Consensus 29 l~~~l~-~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~ 107 (547)
+...+. ..|+..++|-|.++|..++.|++++|.+|||.||+++|.+|++.. ++.+|||+|..+|.+.+.
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~----------~gitvVISPL~SLm~DQv 321 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL----------GGVTVVISPLISLMQDQV 321 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----------CCceEEeccHHHHHHHHH
Confidence 333333 348999999999999999999999999999999999999998765 458999999999988766
Q ss_pred HHHHHhccCCceEEEEecCCCCChh---hHHHhhCC---CcEEEECcHHHHHHHh--cCCcCCCC---eeEEEEeccccc
Q 008956 108 DEAVKFGKSSRISCTCLYGGAPKGP---QLKDIDRG---VDIVVATPGRLNDILE--MRRISLNQ---VSYLVLDEADRM 176 (547)
Q Consensus 108 ~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~~---~~IlV~Tp~~L~~~l~--~~~~~l~~---~~~lVlDEaH~l 176 (547)
..+. ..+|....+.+.....+ .+..+..+ ++|+..||+++...-. .....+.. +.++||||||++
T Consensus 322 ~~L~----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCV 397 (941)
T KOG0351|consen 322 THLS----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCV 397 (941)
T ss_pred Hhhh----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHh
Confidence 6653 34577777777776653 33444444 8999999999854221 11223334 899999999999
Q ss_pred ccCC--cHHHHHHHH---HhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHH
Q 008956 177 LDMG--FEPQIRKIV---KEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 251 (547)
Q Consensus 177 l~~g--~~~~i~~i~---~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 251 (547)
..|+ |++..+++. ..++ ...+|.+|||.+..+.+-+...+.-.....+. ......++...+......+...
T Consensus 398 SqWgHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k~~~~~~~ 473 (941)
T KOG0351|consen 398 SQWGHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPKTDKDALL 473 (941)
T ss_pred hhhcccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEeccCccchH
Confidence 9998 777776653 3333 37899999999988887666665432222111 1112223333333333334455
Q ss_pred HHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCC
Q 008956 252 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 330 (547)
Q Consensus 252 ~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~ 330 (547)
.+...++...+...+||||.++.+|+.++..|.+. +.+..+|++|+..+|..+..+|..++++|+|||=++++|||.|+
T Consensus 474 ~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~D 553 (941)
T KOG0351|consen 474 DILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPD 553 (941)
T ss_pred HHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCc
Confidence 56666677778889999999999999999999876 68999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHH
Q 008956 331 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDL 377 (547)
Q Consensus 331 v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l 377 (547)
|..||||.+|.+.+.|.|-+|||||.|....|++|+...|......+
T Consensus 554 VR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~l 600 (941)
T KOG0351|consen 554 VRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRL 600 (941)
T ss_pred eeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHH
Confidence 99999999999999999999999999999999999987765544443
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.9e-32 Score=302.50 Aligned_cols=331 Identities=21% Similarity=0.307 Sum_probs=254.0
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHH
Q 008956 26 PPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQ 105 (547)
Q Consensus 26 ~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q 105 (547)
...+..++.+.|+..|+.||.+|+..+.+|+++||+.+||||||.+|++|++..+...... ++|+|.||++|++.
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-----~AL~lYPtnALa~D 130 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-----RALLLYPTNALAND 130 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-----cEEEEechhhhHhh
Confidence 3446888899999999999999999999999999999999999999999999998884432 88999999999999
Q ss_pred HHHHHHHhccCCc--eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC----CcCCCCeeEEEEecccccccC
Q 008956 106 IQDEAVKFGKSSR--ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR----RISLNQVSYLVLDEADRMLDM 179 (547)
Q Consensus 106 ~~~~~~~~~~~~~--i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~----~~~l~~~~~lVlDEaH~ll~~ 179 (547)
+.+.+.++....+ +.+....|+++..+....+...++||+|||++|...+... .+.+.++++|||||+|..-.-
T Consensus 131 Q~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv 210 (851)
T COG1205 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV 210 (851)
T ss_pred HHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc
Confidence 9999999987766 7777777777766665666778999999999998755433 234677999999999965432
Q ss_pred CcHHH-------HHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCc------
Q 008956 180 GFEPQ-------IRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP------ 246 (547)
Q Consensus 180 g~~~~-------i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~------ 246 (547)
|... +..++...+...|+|..|||... ..+.+.++........+.... ..... .++....+
T Consensus 211 -~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~~v~~~g---~~~~~-~~~~~~~p~~~~~~ 284 (851)
T COG1205 211 -QGSEVALLLRRLLRRLRRYGSPLQIICTSATLAN-PGEFAEELFGRDFEVPVDEDG---SPRGL-RYFVRREPPIRELA 284 (851)
T ss_pred -chhHHHHHHHHHHHHHhccCCCceEEEEeccccC-hHHHHHHhcCCcceeeccCCC---CCCCc-eEEEEeCCcchhhh
Confidence 3333 33334445567899999999763 445566666555554332221 11111 12222222
Q ss_pred ----cchHHHHHHHHHh-cCCCCeEEEEcCChHHHHHHHHHHh-----cc----cceEEEcCCCCHHHHHHHHHHhhcCC
Q 008956 247 ----MDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLT-----RQ----FGAAAIHGDKSQSERDYVLNQFRAGR 312 (547)
Q Consensus 247 ----~~k~~~l~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~-----~~----~~~~~ihg~~~~~~R~~~l~~F~~g~ 312 (547)
..+...+..++.. ...+-++|+|+.+.+.++.++.... .. ..+..+++.+...+|.+++..|++|+
T Consensus 285 ~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 285 ESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred hhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 1333333333332 2456799999999999999973222 22 35788999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCccEEEEcCCCC-ChhhhHhhhccccCCCCceEEEEEec
Q 008956 313 SPVLVATDVAARGLDIKDIRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVAYTFFG 367 (547)
Q Consensus 313 ~~ILVaT~~~~~GiDip~v~~VI~~d~p~-s~~~yiQriGR~gR~g~~g~~~~l~~ 367 (547)
..++++|.++.-||||-+++.||.+..|. +..++.|+.||+||.++....+.+..
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999999999999999999 89999999999999997776666665
No 77
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=7.9e-32 Score=300.58 Aligned_cols=332 Identities=19% Similarity=0.163 Sum_probs=215.6
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 008956 40 SPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 117 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~ 117 (547)
.|.|||.+++..++.. ..+|+..++|.|||..+.+.+...+... ...++|||||+ .|..||.+++.+.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-----~~~rvLIVvP~-sL~~QW~~El~~kF~-- 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-----RAERVLILVPE-TLQHQWLVEMLRRFN-- 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-----CCCcEEEEcCH-HHHHHHHHHHHHHhC--
Confidence 6999999999887764 4799999999999998766554444331 13489999997 899999999976543
Q ss_pred ceEEEEecCCCCChhhHH---HhhCCCcEEEECcHHHHHHH-hcCCcCCCCeeEEEEecccccccCC--cHHHHHHHHHh
Q 008956 118 RISCTCLYGGAPKGPQLK---DIDRGVDIVVATPGRLNDIL-EMRRISLNQVSYLVLDEADRMLDMG--FEPQIRKIVKE 191 (547)
Q Consensus 118 ~i~~~~~~g~~~~~~~~~---~~~~~~~IlV~Tp~~L~~~l-~~~~~~l~~~~~lVlDEaH~ll~~g--~~~~i~~i~~~ 191 (547)
+....+.+.. ...... ......+++|+|++.|...- ....+.-..+++|||||||++.... .....+.+...
T Consensus 224 -l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~L 301 (956)
T PRK04914 224 -LRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQL 301 (956)
T ss_pred -CCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHH
Confidence 2222221111 110000 11123689999999886421 1112333578999999999986321 12222222222
Q ss_pred CCCCceEEEEeccCcHH--------------------------------HHHHHHHhcCCCe------------------
Q 008956 192 VPARRQTLMYTATWPRE--------------------------------VRKIAADLLVNPV------------------ 221 (547)
Q Consensus 192 l~~~~q~l~~SAT~~~~--------------------------------~~~~~~~~l~~~~------------------ 221 (547)
......+|++||||-.. +.+.+..++....
T Consensus 302 a~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~ 381 (956)
T PRK04914 302 AEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDI 381 (956)
T ss_pred hhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccch
Confidence 22345789999997410 0000110100000
Q ss_pred --------------------------------EEEeCccccc--ccccceeEEEE-------------------------
Q 008956 222 --------------------------------QVNIGNVDEL--AANKAITQHIE------------------------- 242 (547)
Q Consensus 222 --------------------------------~i~i~~~~~~--~~~~~i~~~~~------------------------- 242 (547)
.+-+.+.... .......+.+.
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~p 461 (956)
T PRK04914 382 EPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYP 461 (956)
T ss_pred hHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCH
Confidence 0000000000 00000001110
Q ss_pred ------------EcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhc--ccceEEEcCCCCHHHHHHHHHHh
Q 008956 243 ------------VLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR--QFGAAAIHGDKSQSERDYVLNQF 308 (547)
Q Consensus 243 ------------~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~--~~~~~~ihg~~~~~~R~~~l~~F 308 (547)
......|.+.|.++++... ..|+||||+++..+..+++.|.. .+.+..+||+|++.+|+.+++.|
T Consensus 462 e~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~-~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 462 EQIYQEFEDNATWWNFDPRVEWLIDFLKSHR-SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHHhcC-CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 0111234455666666543 57999999999999999999953 48899999999999999999999
Q ss_pred hcC--CCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHH
Q 008956 309 RAG--RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLE 382 (547)
Q Consensus 309 ~~g--~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~ 382 (547)
+++ .++|||||+++++|+|++.+++||+||+||++..|+|||||++|.|+++.+.+++...+....+.+.+.+.
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~ 616 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYH 616 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHh
Confidence 974 69999999999999999999999999999999999999999999999998777776555444555554443
No 78
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.1e-32 Score=267.28 Aligned_cols=329 Identities=24% Similarity=0.341 Sum_probs=237.2
Q ss_pred HHHHHHHC-CCCCC-cHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHH
Q 008956 29 LLREVHNA-GFSSP-TPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQ 105 (547)
Q Consensus 29 l~~~l~~~-g~~~~-~~~Q~~~i~~il~g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q 105 (547)
+.++|++. |+.++ ++.|+.++.++.++ +||.|++|||+||+++|.+|++.+ +..+||++|..+|...
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----------~gITIV~SPLiALIkD 76 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----------GGITIVISPLIALIKD 76 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----------CCeEEEehHHHHHHHH
Confidence 44556544 66544 89999999998876 699999999999999999998876 4489999999999999
Q ss_pred HHHHHHHhccCCceEEEEecC---CCCChhhHHHhh---CCCcEEEECcHHHH-----HHHhcCCcCCCCeeEEEEeccc
Q 008956 106 IQDEAVKFGKSSRISCTCLYG---GAPKGPQLKDID---RGVDIVVATPGRLN-----DILEMRRISLNQVSYLVLDEAD 174 (547)
Q Consensus 106 ~~~~~~~~~~~~~i~~~~~~g---~~~~~~~~~~~~---~~~~IlV~Tp~~L~-----~~l~~~~~~l~~~~~lVlDEaH 174 (547)
+.+.+.++... +..+.+ ..+..+.+.++. ....++..||+.-. ++|. ...+-..+.|+|+||||
T Consensus 77 QiDHL~~LKVp----~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEAH 151 (641)
T KOG0352|consen 77 QIDHLKRLKVP----CESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEAH 151 (641)
T ss_pred HHHHHHhcCCc----hhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechhh
Confidence 99888876532 222222 233333444443 34789999998632 2222 12233457899999999
Q ss_pred ccccCC--cHHHHHHH---HHhCCCCceEEEEeccCcHHHHHHHHHh--cCCCeEEEeCcccccccccceeEEEEEc-Cc
Q 008956 175 RMLDMG--FEPQIRKI---VKEVPARRQTLMYTATWPREVRKIAADL--LVNPVQVNIGNVDELAANKAITQHIEVL-AP 246 (547)
Q Consensus 175 ~ll~~g--~~~~i~~i---~~~l~~~~q~l~~SAT~~~~~~~~~~~~--l~~~~~i~i~~~~~~~~~~~i~~~~~~~-~~ 246 (547)
++..|| |.+....+ -..++ ....+.+|||.++++++.+... +.+|+.+.-.. ....+ +...+.+. .-
T Consensus 152 CVSQWGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP--~FR~N--LFYD~~~K~~I 226 (641)
T KOG0352|consen 152 CVSQWGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP--TFRDN--LFYDNHMKSFI 226 (641)
T ss_pred hHhhhccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhccCc--chhhh--hhHHHHHHHHh
Confidence 999998 77766554 23333 4568999999999988654433 34454332111 11111 00000000 00
Q ss_pred cchHHHHHHHHHhc------------CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCC
Q 008956 247 MDKHRRLEQILRSQ------------EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 313 (547)
Q Consensus 247 ~~k~~~l~~~l~~~------------~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~ 313 (547)
.+-...|.++.... ....-.||||.|+..|+.++-.|... +++..+|+++...+|..+.++|-+++.
T Consensus 227 ~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~ 306 (641)
T KOG0352|consen 227 TDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEI 306 (641)
T ss_pred hhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCC
Confidence 11122233332211 11235799999999999999999855 899999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHH
Q 008956 314 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDL 377 (547)
Q Consensus 314 ~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l 377 (547)
.|+++|..+++|+|-|+|.+||+++.|.+..-|.|-.||+||.|+...|-++|..+|....+-+
T Consensus 307 PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 307 PVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred CEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988776644433
No 79
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=292.61 Aligned_cols=327 Identities=23% Similarity=0.322 Sum_probs=242.4
Q ss_pred CCCCCcHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHhhhccC---CCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 008956 37 GFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRN---DPRLGPTVLVLSPTRELATQIQDEAVK 112 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~---~~~~~~~vLil~Ptr~L~~Q~~~~~~~ 112 (547)
+|.++..+|.+++|.+.+. .|+|||||||+|||..|++.++..+..... .....-++++|+|+++||.++++.|.+
T Consensus 107 ~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred cHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 7889999999999999875 699999999999999999999998875221 122356999999999999999999999
Q ss_pred hccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCC----cCCCCeeEEEEecccccccCCcHHHHHHH
Q 008956 113 FGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR----ISLNQVSYLVLDEADRMLDMGFEPQIRKI 188 (547)
Q Consensus 113 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~----~~l~~~~~lVlDEaH~ll~~g~~~~i~~i 188 (547)
-+...++.|..++|+....+.. ...|+|+|+|||++ |.+.+.. ..+..+.+|||||+|. +.....+.++.|
T Consensus 187 kl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHl-Lhd~RGpvlEti 261 (1230)
T KOG0952|consen 187 KLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHL-LHDDRGPVLETI 261 (1230)
T ss_pred hcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehh-hcCcccchHHHH
Confidence 8888899999999987643332 23489999999999 4443322 2256789999999995 555567777777
Q ss_pred HHhC-------CCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCcc---chH-----HHH
Q 008956 189 VKEV-------PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPM---DKH-----RRL 253 (547)
Q Consensus 189 ~~~l-------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~---~k~-----~~l 253 (547)
+... ....+++++|||+|+ .++++..+-.++ ...+...+..-....+.+.+.-.... .+. ...
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~-~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNP-YAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCC-ccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 6543 346789999999984 555554443332 22222233333344455555444333 111 123
Q ss_pred HHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc------------------------cceEEEcCCCCHHHHHHHHHHhh
Q 008956 254 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ------------------------FGAAAIHGDKSQSERDYVLNQFR 309 (547)
Q Consensus 254 ~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~------------------------~~~~~ihg~~~~~~R~~~l~~F~ 309 (547)
..+++....+.+++|||.++......|+.|.+. ....++|++|...+|..+++.|.
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~ 419 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK 419 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh
Confidence 334444567889999999999888888887431 24678999999999999999999
Q ss_pred cCCCcEEEEccccccCCCCCCccEEEE----cCCCC------ChhhhHhhhccccCCC--CceEEEEEecCCC
Q 008956 310 AGRSPVLVATDVAARGLDIKDIRVVVN----YDFPT------GVEDYVHRIGRTGRAG--ATGVAYTFFGDQD 370 (547)
Q Consensus 310 ~g~~~ILVaT~~~~~GiDip~v~~VI~----~d~p~------s~~~yiQriGR~gR~g--~~g~~~~l~~~~~ 370 (547)
.|.++||+||..++.|+|+|.-.++|- ||.-. ++-+.+|..|||||.. ..|.++++-+...
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccH
Confidence 999999999999999999998666662 33322 4678999999999974 6688887765443
No 80
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.3e-31 Score=291.07 Aligned_cols=355 Identities=22% Similarity=0.258 Sum_probs=283.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 24 GFPPELLREVHNAGFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 24 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g------~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
+.+.+..+.+...=-.+-||-|..||..+.+. -|-|||+..|.|||-+++=+++..+.. +++|.|||
T Consensus 578 ~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-------GKQVAvLV 650 (1139)
T COG1197 578 PPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-------GKQVAVLV 650 (1139)
T ss_pred CCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-------CCeEEEEc
Confidence 34556666666553347899999999999863 478999999999999999999988876 78999999
Q ss_pred CcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhCC-CcEEEECcHHHHHHHhcCCcCCCCeeEEEEecc
Q 008956 98 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 173 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEa 173 (547)
||.-||+|.++.|++.+...++++..+.--....++ +..+..| .||||+|+--| ...+.+.++.+|||||-
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEE 725 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEE 725 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEech
Confidence 999999999999999999999999888765555444 4556665 99999996544 34788999999999999
Q ss_pred cccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHH
Q 008956 174 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRL 253 (547)
Q Consensus 174 H~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 253 (547)
|+ |.-.-++-++.+..+..+|-+||||-+....+.-.-+.+-..+.....+..+ +.. ++.+.+..-.-
T Consensus 726 qR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p----V~T---~V~~~d~~~ir 793 (1139)
T COG1197 726 QR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP----VKT---FVSEYDDLLIR 793 (1139)
T ss_pred hh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc----eEE---EEecCChHHHH
Confidence 99 6777777788888889999999999888888887777777766555444322 222 22223333333
Q ss_pred HHHHHhcCCCCeEEEEcCChHHHHHHHHHHhccc---ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCC
Q 008956 254 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQF---GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 330 (547)
Q Consensus 254 ~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~~---~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~ 330 (547)
..++++...++++...+|.++.++.+++.|++.+ .+.+.||.|+..+-+.++.+|.+|+.+|||||.+++.|||||+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCC
Confidence 4456666778999999999999999999999864 4788899999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCC-ChhhhHhhhccccCCCCceEEEEEecCCC--hHHHHHHHHHHH---HhcccccHHHHHHHHcCCCC
Q 008956 331 IRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVAYTFFGDQD--SRYASDLIKLLE---GAKQQVPRELRDMASRGGGM 402 (547)
Q Consensus 331 v~~VI~~d~p~-s~~~yiQriGR~gR~g~~g~~~~l~~~~~--~~~~~~l~~~l~---~~~~~v~~~l~~l~~~~~g~ 402 (547)
++++|.-+.-. ...+..|..||+||..+.+.||.++.+.. ...+.+.++.++ +....+-..+.+|.+||.|.
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaGN 951 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGN 951 (1139)
T ss_pred CceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhcccccc
Confidence 99988766654 88999999999999999999999997533 234444444443 44566777888888888654
No 81
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.1e-31 Score=303.28 Aligned_cols=300 Identities=19% Similarity=0.301 Sum_probs=208.5
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC----cHHHHHHHHHHHHH-hccC
Q 008956 42 TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP----TRELATQIQDEAVK-FGKS 116 (547)
Q Consensus 42 ~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P----tr~L~~Q~~~~~~~-~~~~ 116 (547)
+.+..+++..+..++.++++++||||||+ .+|.+...... .....+++.-| +++||.++++++.. ++..
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR----GVKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 44555666777777778889999999998 57755432210 01124444556 46899999988875 4444
Q ss_pred CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccc-ccccCCcHHH-HHHHHHhCCC
Q 008956 117 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD-RMLDMGFEPQ-IRKIVKEVPA 194 (547)
Q Consensus 117 ~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH-~ll~~g~~~~-i~~i~~~l~~ 194 (547)
.++.+. .. ......++|+|+||++|++.+.... .+.++++||||||| ++++++|... +..++... +
T Consensus 150 VGY~vr-------f~---~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-p 217 (1294)
T PRK11131 150 VGYKVR-------FN---DQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-P 217 (1294)
T ss_pred eceeec-------Cc---cccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhcC-C
Confidence 444321 11 1123468999999999999887654 48999999999999 6899887653 44443332 4
Q ss_pred CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccc---hHHHHHHH---HHh--cCCCCeE
Q 008956 195 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMD---KHRRLEQI---LRS--QEPGSKI 266 (547)
Q Consensus 195 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~---k~~~l~~~---l~~--~~~~~k~ 266 (547)
+.|+|+||||++.+ .+.+.+...| .+.+.... ..+...+....... +.+.+..+ +.. ......+
T Consensus 218 dlKvILmSATid~e--~fs~~F~~ap-vI~V~Gr~-----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdI 289 (1294)
T PRK11131 218 DLKVIITSATIDPE--RFSRHFNNAP-IIEVSGRT-----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDI 289 (1294)
T ss_pred CceEEEeeCCCCHH--HHHHHcCCCC-EEEEcCcc-----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCE
Confidence 67999999999753 4444444334 44443221 11233333222111 12222222 221 2344689
Q ss_pred EEEcCChHHHHHHHHHHhcc-c---ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcC----
Q 008956 267 IVFCSTKKMCDQLARNLTRQ-F---GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYD---- 338 (547)
Q Consensus 267 IVF~~s~~~~~~l~~~L~~~-~---~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d---- 338 (547)
||||+++++++.+++.|++. + .+..+|+++++++|..+++. .+..+|||||+++++|||||+|++||+++
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~ 367 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARI 367 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccc
Confidence 99999999999999999864 3 36789999999999999876 47889999999999999999999999986
Q ss_pred -----------CC---CChhhhHhhhccccCCCCceEEEEEecCCC
Q 008956 339 -----------FP---TGVEDYVHRIGRTGRAGATGVAYTFFGDQD 370 (547)
Q Consensus 339 -----------~p---~s~~~yiQriGR~gR~g~~g~~~~l~~~~~ 370 (547)
+| .|..+|+||+|||||. .+|.||.||++.+
T Consensus 368 ~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 368 SRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred cccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 33 3557999999999999 7899999998654
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=9.5e-31 Score=275.21 Aligned_cols=296 Identities=25% Similarity=0.293 Sum_probs=203.5
Q ss_pred CCCCcHHHHHHHHHHhC----CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 38 FSSPTPIQAQSWPIALQ----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 38 ~~~~~~~Q~~~i~~il~----g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
..+|++||++++..+.. .+..++++|||+|||.+++..+.. + ...+|||||+++|+.||++.+.++
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~---------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-L---------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-h---------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 35799999999999998 889999999999999876654332 2 225999999999999999887777
Q ss_pred ccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCC
Q 008956 114 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP 193 (547)
Q Consensus 114 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~ 193 (547)
.... . ....+++..+. ... ..|+|+|++.+........+....+++|||||||++.... .+.+.+.+.
T Consensus 104 ~~~~-~-~~g~~~~~~~~-----~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~ 171 (442)
T COG1061 104 LLLN-D-EIGIYGGGEKE-----LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELLS 171 (442)
T ss_pred cCCc-c-ccceecCceec-----cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhhh
Confidence 6543 1 11222222211 111 3699999999977421123334479999999999986543 334444444
Q ss_pred CCceEEEEeccCcHHHHH---HHHHhcCCCeEEEeCcccccccccceeEEE---EE--c---------------------
Q 008956 194 ARRQTLMYTATWPREVRK---IAADLLVNPVQVNIGNVDELAANKAITQHI---EV--L--------------------- 244 (547)
Q Consensus 194 ~~~q~l~~SAT~~~~~~~---~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~---~~--~--------------------- 244 (547)
....+|.+|||+++.... .+..++ .+..+.....+........+..+ .. .
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 333389999998754411 111111 12333332221111000000000 00 0
Q ss_pred --------------CccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcccceEEEcCCCCHHHHHHHHHHhhc
Q 008956 245 --------------APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRA 310 (547)
Q Consensus 245 --------------~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg~~~~~~R~~~l~~F~~ 310 (547)
....+...+..++.....+.+++|||.++.+++.++..|...-.+..+.+..+..+|+.+++.|+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHc
Confidence 001111222333333224679999999999999999999865337899999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCC
Q 008956 311 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA 356 (547)
Q Consensus 311 g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~ 356 (547)
+.+++||++.++.+|+|+|+++++|......|+..|+||+||.-|.
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999999999999999993
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.98 E-value=9.4e-30 Score=280.28 Aligned_cols=313 Identities=19% Similarity=0.207 Sum_probs=216.3
Q ss_pred CCcHHHHHHHHHHhCC---CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 40 SPTPIQAQSWPIALQS---RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g---~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
.|+++|.++++.++++ +++++.++||||||.+|+.++...+.. +.++|||+|+++|+.|+.+.+++.+.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-------g~~vLvLvPt~~L~~Q~~~~l~~~fg- 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-------GKQALVLVPEIALTPQMLARFRARFG- 215 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHhC-
Confidence 6899999999999884 789999999999999998877766654 56999999999999999999988653
Q ss_pred CceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCc------HHHHH
Q 008956 117 SRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF------EPQIR 186 (547)
Q Consensus 117 ~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~------~~~i~ 186 (547)
..+..++++....+. +..+.. ..+|+|+|+..+. ..+.++++|||||+|....... ...+.
T Consensus 216 --~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va 286 (679)
T PRK05580 216 --APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA 286 (679)
T ss_pred --CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH
Confidence 567777777665433 334444 4899999998763 4577899999999997653321 11222
Q ss_pred HHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCcc------chHHHHHHHH-Hh
Q 008956 187 KIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPM------DKHRRLEQIL-RS 259 (547)
Q Consensus 187 ~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~~l-~~ 259 (547)
++.....+.+++++|||++.+....+..- ....+.+...-. .........+...... .....+.+.+ +.
T Consensus 287 -~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~-~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~ 362 (679)
T PRK05580 287 -VVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAG-GARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQR 362 (679)
T ss_pred -HHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccc-cCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHH
Confidence 23334567899999999886665444321 111222211100 0000001111110000 0112233333 33
Q ss_pred cCCCCeEEEEcCCh------------------------------------------------------------HHHHHH
Q 008956 260 QEPGSKIIVFCSTK------------------------------------------------------------KMCDQL 279 (547)
Q Consensus 260 ~~~~~k~IVF~~s~------------------------------------------------------------~~~~~l 279 (547)
...+.++|||+|.+ ..++.+
T Consensus 363 l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~ 442 (679)
T PRK05580 363 LERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERL 442 (679)
T ss_pred HHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHH
Confidence 45567888887642 145677
Q ss_pred HHHHhcc---cceEEEcCCCC--HHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEc--CCCCCh---------
Q 008956 280 ARNLTRQ---FGAAAIHGDKS--QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNY--DFPTGV--------- 343 (547)
Q Consensus 280 ~~~L~~~---~~~~~ihg~~~--~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~--d~p~s~--------- 343 (547)
++.|++. .++..+|++++ +.+++.++++|++|+.+|||+|+++++|+|+|++++|+.+ |.+-+.
T Consensus 443 ~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~ 522 (679)
T PRK05580 443 EEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERT 522 (679)
T ss_pred HHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHH
Confidence 7778764 46889999986 4678999999999999999999999999999999998655 444333
Q ss_pred -hhhHhhhccccCCCCceEEEEEecCCChHH
Q 008956 344 -EDYVHRIGRTGRAGATGVAYTFFGDQDSRY 373 (547)
Q Consensus 344 -~~yiQriGR~gR~g~~g~~~~l~~~~~~~~ 373 (547)
..|+|++||+||.++.|.+++.....+...
T Consensus 523 ~~~l~q~~GRagR~~~~g~viiqT~~p~~~~ 553 (679)
T PRK05580 523 FQLLTQVAGRAGRAEKPGEVLIQTYHPEHPV 553 (679)
T ss_pred HHHHHHHHhhccCCCCCCEEEEEeCCCCCHH
Confidence 568999999999999999997766555443
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=8.6e-29 Score=274.72 Aligned_cols=312 Identities=19% Similarity=0.252 Sum_probs=205.4
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC-
Q 008956 38 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS- 116 (547)
Q Consensus 38 ~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~- 116 (547)
...|+|+|+.+.........+|+.||||+|||.++++++...+... ....++|..||+++++|+++.+.++...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~-----~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG-----LADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 3489999998865544556789999999999999888766544331 1358999999999999999998764321
Q ss_pred -CceEEEEecCCCCChh------------------------hHHHhhC---CCcEEEECcHHHHHHHh-cCCcCCCC---
Q 008956 117 -SRISCTCLYGGAPKGP------------------------QLKDIDR---GVDIVVATPGRLNDILE-MRRISLNQ--- 164 (547)
Q Consensus 117 -~~i~~~~~~g~~~~~~------------------------~~~~~~~---~~~IlV~Tp~~L~~~l~-~~~~~l~~--- 164 (547)
....+..++|...... .+....+ -.+|+|+|.+.++..+. .+...+..
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 1234555555433111 0000001 26899999998875433 22222222
Q ss_pred -eeEEEEecccccccCCcHHHHHHHHHhCC-CCceEEEEeccCcHHHHHHHHHhcCCC---------eEEEeCc---ccc
Q 008956 165 -VSYLVLDEADRMLDMGFEPQIRKIVKEVP-ARRQTLMYTATWPREVRKIAADLLVNP---------VQVNIGN---VDE 230 (547)
Q Consensus 165 -~~~lVlDEaH~ll~~g~~~~i~~i~~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~---------~~i~i~~---~~~ 230 (547)
-++|||||+|.+ +.-....+..+++.+. ....+|+||||+|....+.+...+... ..+.... ...
T Consensus 439 a~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~ 517 (878)
T PRK09694 439 GRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQR 517 (878)
T ss_pred ccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccccee
Confidence 358999999975 3333445566665543 356799999999988775444322110 0000000 000
Q ss_pred ccc-------ccceeEEEEEc--Cc-cchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc----cceEEEcCCC
Q 008956 231 LAA-------NKAITQHIEVL--AP-MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ----FGAAAIHGDK 296 (547)
Q Consensus 231 ~~~-------~~~i~~~~~~~--~~-~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~----~~~~~ihg~~ 296 (547)
... .......+... .. ......+..+++....+.++||||||++.|..+++.|++. ..+..+|+.+
T Consensus 518 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf 597 (878)
T PRK09694 518 FDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARF 597 (878)
T ss_pred eeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCC
Confidence 000 00011111111 11 1223444555555566789999999999999999999865 3689999999
Q ss_pred CHHHH----HHHHHHh-hcCC---CcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCC
Q 008956 297 SQSER----DYVLNQF-RAGR---SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGA 358 (547)
Q Consensus 297 ~~~~R----~~~l~~F-~~g~---~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~ 358 (547)
+..+| +++++.| ++++ ..|||||+++++|||| +++++|....| ++.++||+||++|.+.
T Consensus 598 ~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 598 TLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999 4567788 6666 4699999999999999 68999998888 7899999999999875
No 85
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=1.3e-29 Score=240.68 Aligned_cols=202 Identities=50% Similarity=0.845 Sum_probs=182.8
Q ss_pred CccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCc
Q 008956 20 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 99 (547)
Q Consensus 20 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Pt 99 (547)
|+++++++.+.+.+...++..|+++|.++++.+++++++++++|||+|||++|++|++..+..... ..++++||++|+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~--~~~~~viii~p~ 78 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK--KDGPQALILAPT 78 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--cCCceEEEEcCC
Confidence 678899999999999999999999999999999999999999999999999999999988776421 135799999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccC
Q 008956 100 RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 179 (547)
Q Consensus 100 r~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~ 179 (547)
++|+.|+.+.+..+....++.+..++++....+....+...++|+|+||+.|.+++......+.+++++|+||||.+.+.
T Consensus 79 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 79 RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhcc
Confidence 99999999999999887788889999988877776677678999999999999999888788889999999999999988
Q ss_pred CcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEE
Q 008956 180 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQV 223 (547)
Q Consensus 180 g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i 223 (547)
++...+..+...++..+|++++|||+++.+..++..++.++..+
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 89999999999999999999999999999999999988877654
No 86
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=6e-30 Score=246.64 Aligned_cols=334 Identities=21% Similarity=0.324 Sum_probs=250.4
Q ss_pred ccCCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCc
Q 008956 21 DATGFPPELLREVHNA-GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 99 (547)
Q Consensus 21 ~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Pt 99 (547)
+++|++.+..+.|+.. -..+++|.|.++|++.+.++++++..|||-||+++|.+|++.. ...+||+||.
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a----------dg~alvi~pl 143 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA----------DGFALVICPL 143 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc----------CCceEeechh
Confidence 3445566666666543 5678899999999999999999999999999999999998875 4589999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH---HHhh---CCCcEEEECcHHHHHHH---h--cCCcCCCCeeEE
Q 008956 100 RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDID---RGVDIVVATPGRLNDIL---E--MRRISLNQVSYL 168 (547)
Q Consensus 100 r~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~---~~~~---~~~~IlV~Tp~~L~~~l---~--~~~~~l~~~~~l 168 (547)
.+|++.+.-.+++++.. ...+.....+.+.. ..+. ....++..||+++...- . ...+....+.+|
T Consensus 144 islmedqil~lkqlgi~----as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 144 ISLMEDQILQLKQLGID----ASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHHHhCcc----hhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 99999988888887643 22232222222221 1222 24789999999875321 1 124456678999
Q ss_pred EEecccccccCC--cHHHHHH--HHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEc
Q 008956 169 VLDEADRMLDMG--FEPQIRK--IVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL 244 (547)
Q Consensus 169 VlDEaH~ll~~g--~~~~i~~--i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~ 244 (547)
.+||+|+...|| |.+.... |+..--+...++.+|||....+...+.+.+.-...+.+...- ...++...+ ..
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~f---nr~nl~yev-~q 295 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGF---NRPNLKYEV-RQ 295 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeeccc---CCCCceeEe-ee
Confidence 999999999987 6555443 344434466799999999988887777766433333222111 111122222 22
Q ss_pred Cccch---HHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc
Q 008956 245 APMDK---HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 320 (547)
Q Consensus 245 ~~~~k---~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~ 320 (547)
.+... .+.+..+++....+...||||-+..+|+.++..|+.. +.+..+|..|.+.++.-+-+.|-.|++.|+|+|-
T Consensus 296 kp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv 375 (695)
T KOG0353|consen 296 KPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV 375 (695)
T ss_pred CCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEe
Confidence 23223 3344455555567788999999999999999999876 7888999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCChhhhHh-------------------------------------------hhccccCCC
Q 008956 321 VAARGLDIKDIRVVVNYDFPTGVEDYVH-------------------------------------------RIGRTGRAG 357 (547)
Q Consensus 321 ~~~~GiDip~v~~VI~~d~p~s~~~yiQ-------------------------------------------riGR~gR~g 357 (547)
++++|||-|+|++||+-.+|.+++.|.| -.||+||.+
T Consensus 376 afgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~ 455 (695)
T KOG0353|consen 376 AFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD 455 (695)
T ss_pred eecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC
Confidence 9999999999999999999999999999 679999999
Q ss_pred CceEEEEEecCCChH
Q 008956 358 ATGVAYTFFGDQDSR 372 (547)
Q Consensus 358 ~~g~~~~l~~~~~~~ 372 (547)
.+..|+++|.-.|.-
T Consensus 456 ~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 456 MKADCILYYGFADIF 470 (695)
T ss_pred CcccEEEEechHHHH
Confidence 999999999755543
No 87
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.6e-28 Score=278.60 Aligned_cols=310 Identities=16% Similarity=0.221 Sum_probs=207.8
Q ss_pred CCCCCcHHHH---HHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 37 GFSSPTPIQA---QSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 37 g~~~~~~~Q~---~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
.|...-|+.. +.+..+..++.+||+++||||||+ .+|.+...... .....+++.-|.|.-|..++..+.+.
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~----~~~~~I~~tQPRRlAA~svA~RvA~e 134 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR----GSHGLIGHTQPRRLAARTVAQRIAEE 134 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC----CCCceEecCCccHHHHHHHHHHHHHH
Confidence 4544344443 556666667778889999999998 45655432210 11236777788887666666555544
Q ss_pred cc-CCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccc-ccccCCcHHH-HHHHHH
Q 008956 114 GK-SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD-RMLDMGFEPQ-IRKIVK 190 (547)
Q Consensus 114 ~~-~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH-~ll~~g~~~~-i~~i~~ 190 (547)
.. ..+-.+...+. ... .......|+|+|++.|++.+.... .+.++++||||||| ++++.+|.-. ++.++.
T Consensus 135 lg~~lG~~VGY~vR---~~~---~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~ 207 (1283)
T TIGR01967 135 LGTPLGEKVGYKVR---FHD---QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207 (1283)
T ss_pred hCCCcceEEeeEEc---CCc---ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHh
Confidence 32 22222211111 111 123457899999999998876543 47899999999999 6999887654 566655
Q ss_pred hCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCc------cchHHHHHHHHHhc--CC
Q 008956 191 EVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP------MDKHRRLEQILRSQ--EP 262 (547)
Q Consensus 191 ~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~~l~~~--~~ 262 (547)
.. ++.|+|+||||++. ..+.+.+...| .+.+.... ..+...+..... .++...+...+... ..
T Consensus 208 ~r-pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~ 278 (1283)
T TIGR01967 208 RR-PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEG 278 (1283)
T ss_pred hC-CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECCCc-----ccceeEEecccccccchhhhHHHHHHHHHHHHHhhC
Confidence 44 46789999999974 34444443333 34443221 112222221111 12223333333221 23
Q ss_pred CCeEEEEcCChHHHHHHHHHHhcc----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcC
Q 008956 263 GSKIIVFCSTKKMCDQLARNLTRQ----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYD 338 (547)
Q Consensus 263 ~~k~IVF~~s~~~~~~l~~~L~~~----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d 338 (547)
.+.+|||++++.+++.+++.|.+. +.+..+||.+++++|..+++.+ +..+|||||+++++|||||+|++||+++
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsG 356 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTG 356 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCC
Confidence 468999999999999999999854 3478899999999999986654 3468999999999999999999999998
Q ss_pred CC------------------CChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 339 FP------------------TGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 339 ~p------------------~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
++ .|..+|+||.||+||.+ +|.||.||++.+.
T Consensus 357 l~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 357 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred CccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 53 25679999999999997 8999999986543
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=3.7e-28 Score=258.62 Aligned_cols=292 Identities=19% Similarity=0.221 Sum_probs=194.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChh---hHH
Q 008956 59 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLK 135 (547)
Q Consensus 59 lv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~ 135 (547)
|+.++||||||.+|+..+...+.. +.++|||+|+++|+.|+++.+++.+. ..+..++++....+ .+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~-------g~~vLvlvP~i~L~~Q~~~~l~~~f~---~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL-------GKSVLVLVPEIALTPQMIQRFKYRFG---SQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHhC---CcEEEEECCCCHHHHHHHHH
Confidence 478999999999987765555543 66899999999999999999988653 44566666655433 344
Q ss_pred HhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC-----c-HHHHHHHHHhCCCCceEEEEeccCcHH
Q 008956 136 DIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-----F-EPQIRKIVKEVPARRQTLMYTATWPRE 208 (547)
Q Consensus 136 ~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g-----~-~~~i~~i~~~l~~~~q~l~~SAT~~~~ 208 (547)
.+.. ..+|+|+|+..+. ..+.++++|||||+|...-+. | ...+.... ....+.++|++|||+..+
T Consensus 71 ~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r-a~~~~~~vil~SATPsle 142 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR-AKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHH-HHhcCCCEEEEeCCCCHH
Confidence 4444 4799999998763 347789999999999866332 1 11222222 333567899999998766
Q ss_pred HHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCcc---chHHHHHHHH-HhcCCCCeEEEEcCChHH---------
Q 008956 209 VRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPM---DKHRRLEQIL-RSQEPGSKIIVFCSTKKM--------- 275 (547)
Q Consensus 209 ~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~---~k~~~l~~~l-~~~~~~~k~IVF~~s~~~--------- 275 (547)
....+..- ....+.+..... .........+...... .....+.+.+ +....+.++|||+|++..
T Consensus 143 s~~~~~~g--~~~~~~l~~r~~-~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 143 SYHNAKQK--AYRLLVLTRRVS-GRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HHHHHhcC--CeEEeechhhhc-CCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhC
Confidence 55444221 111111111000 0000011111111111 0112233333 444566789999766432
Q ss_pred ---------------------------------------------------HHHHHHHHhccc---ceEEEcCCCCHHHH
Q 008956 276 ---------------------------------------------------CDQLARNLTRQF---GAAAIHGDKSQSER 301 (547)
Q Consensus 276 ---------------------------------------------------~~~l~~~L~~~~---~~~~ihg~~~~~~R 301 (547)
.+.+++.|++.| ++..+|++++...+
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCcc
Confidence 477778887654 58899999987665
Q ss_pred --HHHHHHhhcCCCcEEEEccccccCCCCCCccEEE--EcCCCCC----------hhhhHhhhccccCCCCceEEEEEec
Q 008956 302 --DYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV--NYDFPTG----------VEDYVHRIGRTGRAGATGVAYTFFG 367 (547)
Q Consensus 302 --~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI--~~d~p~s----------~~~yiQriGR~gR~g~~g~~~~l~~ 367 (547)
+.+++.|++|+.+|||+|+++++|+|+|++++|+ ++|...+ ...|+|++||+||.++.|.+++...
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8899999999999999999999999999999875 5554222 3568999999999999998886554
Q ss_pred CCCh
Q 008956 368 DQDS 371 (547)
Q Consensus 368 ~~~~ 371 (547)
..+.
T Consensus 380 ~p~~ 383 (505)
T TIGR00595 380 NPNH 383 (505)
T ss_pred CCCC
Confidence 4443
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.4e-27 Score=259.97 Aligned_cols=319 Identities=18% Similarity=0.229 Sum_probs=222.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.|+++|... .+.-+..-|+.++||+|||++|++|++..... +..++||+||++||.|.++++..+....++
T Consensus 82 ~~ydvQliG--g~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~-------G~~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 82 RHFDVQLIG--GMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS-------GRGVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred CcchHHHhh--hhhhccCccccccCCCCchHHHHHHHHHHHhc-------CCCEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 445555444 44344556899999999999999999977654 457999999999999999999999999999
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcC-CcCC-----CCeeEEEEecccccccC-------------
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR-RISL-----NQVSYLVLDEADRMLDM------------- 179 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~-~~~l-----~~~~~lVlDEaH~ll~~------------- 179 (547)
.+.+++++.+.......+ .++|+++||++| .++|... .+.+ ..+.++||||||.||-.
T Consensus 153 tv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~ 230 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAE 230 (896)
T ss_pred eEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCc
Confidence 999999987766554433 589999999999 8998876 3333 47999999999987721
Q ss_pred ---CcHHHHHHHHHhCCC--------------CceEEEEeccCcHHHHHH----------------------------HH
Q 008956 180 ---GFEPQIRKIVKEVPA--------------RRQTLMYTATWPREVRKI----------------------------AA 214 (547)
Q Consensus 180 ---g~~~~i~~i~~~l~~--------------~~q~l~~SAT~~~~~~~~----------------------------~~ 214 (547)
.....+..++..+.. ..+.+.+|-.=...++.+ ++
T Consensus 231 ~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~ 310 (896)
T PRK13104 231 DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALK 310 (896)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHH
Confidence 012222333333221 122233332200000000 00
Q ss_pred --HhcCCCeEEEe--------Cc---------------------------------------------------------
Q 008956 215 --DLLVNPVQVNI--------GN--------------------------------------------------------- 227 (547)
Q Consensus 215 --~~l~~~~~i~i--------~~--------------------------------------------------------- 227 (547)
.++.....+.+ ..
T Consensus 311 A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~ 390 (896)
T PRK13104 311 AHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTAD 390 (896)
T ss_pred HHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCCh
Confidence 01111000000 00
Q ss_pred -------------ccccccccce----eEEEEEcCccchHHHHHHHHH-hcCCCCeEEEEcCChHHHHHHHHHHhcc-cc
Q 008956 228 -------------VDELAANKAI----TQHIEVLAPMDKHRRLEQILR-SQEPGSKIIVFCSTKKMCDQLARNLTRQ-FG 288 (547)
Q Consensus 228 -------------~~~~~~~~~i----~~~~~~~~~~~k~~~l~~~l~-~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~ 288 (547)
.-..+++..+ .....+....+|...+.+.+. ....+.++||||+|++.++.+++.|++. ++
T Consensus 391 te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~ 470 (896)
T PRK13104 391 TEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIK 470 (896)
T ss_pred hHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 0000111111 111233444556666655554 3467889999999999999999999875 89
Q ss_pred eEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCC--------------------------------------
Q 008956 289 AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD-------------------------------------- 330 (547)
Q Consensus 289 ~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~-------------------------------------- 330 (547)
+.++|+++.+.+++.+.+.|+.|. |+|||++++||+||.=
T Consensus 471 h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 548 (896)
T PRK13104 471 HQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAG 548 (896)
T ss_pred eEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcC
Confidence 999999999999999999999995 9999999999999962
Q ss_pred ccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 331 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 331 v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
=-|||-...+.|..---|..||+||.|.+|.+-.|++-.|.
T Consensus 549 GL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 549 GLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred CCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12788888888999999999999999999999988876554
No 90
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=8.8e-28 Score=260.09 Aligned_cols=336 Identities=21% Similarity=0.292 Sum_probs=239.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCC----CCCEEEEEcC
Q 008956 24 GFPPELLREVHNAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPR----LGPTVLVLSP 98 (547)
Q Consensus 24 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~----~~~~vLil~P 98 (547)
.+|.+...++. |+..+.++|..+..+++.+ .++++|||||+|||..+++.++..+........ ...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 46666777776 5667999999999999887 579999999999999999999998876544211 1348999999
Q ss_pred cHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCc---CCCCeeEEEEecccc
Q 008956 99 TRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI---SLNQVSYLVLDEADR 175 (547)
Q Consensus 99 tr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~---~l~~~~~lVlDEaH~ 175 (547)
.++|++.|...+.+.....++.|.-.+|+....... ..+..|+|+||++.. .+.+..- ..+-++++|+||.|
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEIH- 447 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEIH- 447 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhhh-
Confidence 999999999999999999999999999986532221 124689999999984 4443322 23457899999999
Q ss_pred cccCCcHHHHHHHHHhC-------CCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccc
Q 008956 176 MLDMGFEPQIRKIVKEV-------PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMD 248 (547)
Q Consensus 176 ll~~g~~~~i~~i~~~l-------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~ 248 (547)
|+.....+.+..|+... .....++.+|||+|+ ..+...-+..++..+.. .+..-.+..+.|.+.-+...+
T Consensus 448 LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~--fd~syRpvPL~qq~Igi~ek~ 524 (1674)
T KOG0951|consen 448 LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFY--FDSSYRPVPLKQQYIGITEKK 524 (1674)
T ss_pred hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCcccccc--cCcccCcCCccceEeccccCC
Confidence 45444667776665443 346789999999995 33333333333322211 111122233444443333222
Q ss_pred ---hH-----HHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhc-----------------------------------
Q 008956 249 ---KH-----RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR----------------------------------- 285 (547)
Q Consensus 249 ---k~-----~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~----------------------------------- 285 (547)
+. .....+++.... .++|||+.++++..+.|+.++.
T Consensus 525 ~~~~~qamNe~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLk 603 (1674)
T KOG0951|consen 525 PLKRFQAMNEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLK 603 (1674)
T ss_pred chHHHHHHHHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHH
Confidence 11 222334444444 7999999999988888877752
Q ss_pred ---ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEE----EcCC------CCChhhhHhhhcc
Q 008956 286 ---QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV----NYDF------PTGVEDYVHRIGR 352 (547)
Q Consensus 286 ---~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI----~~d~------p~s~~~yiQriGR 352 (547)
.++++++|++|+..+|+.+++.|..|.++|||+|..+++|+|+|.-+++| .||+ +-++.+.+|++||
T Consensus 604 dLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 604 DLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred HHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 13678999999999999999999999999999999999999999988887 3443 2378999999999
Q ss_pred ccCCCC--ceEEEEEecCCC
Q 008956 353 TGRAGA--TGVAYTFFGDQD 370 (547)
Q Consensus 353 ~gR~g~--~g~~~~l~~~~~ 370 (547)
+||..- .|..++.-+..+
T Consensus 684 agrp~~D~~gegiiit~~se 703 (1674)
T KOG0951|consen 684 AGRPQYDTCGEGIIITDHSE 703 (1674)
T ss_pred cCCCccCcCCceeeccCchH
Confidence 999863 445554444333
No 91
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=4.8e-27 Score=263.17 Aligned_cols=315 Identities=17% Similarity=0.219 Sum_probs=210.9
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 40 SPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 40 ~~~~~Q~~~i~~il----~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
+|+|||.+.+.+++ .+.+.|++.++|.|||+.++..+ ..+..... ...++|||||. +|+.||..++.+|+.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~---~~gp~LIVvP~-SlL~nW~~Ei~kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRG---ITGPHMVVAPK-STLGNWMNEIRRFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcC---CCCCEEEEeCh-HHHHHHHHHHHHHCC
Confidence 68999999999886 46789999999999998765443 33322111 13478999996 788999999999985
Q ss_pred CCceEEEEecCCCCChhhHHH--h-hCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhC
Q 008956 116 SSRISCTCLYGGAPKGPQLKD--I-DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV 192 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~~~--~-~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l 192 (547)
. +.+..++|.......... + ...++|+|+|++.+..... .+.-..+++|||||||++.+. ...+..++..+
T Consensus 244 ~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 244 V--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred C--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 4 555666665443222211 1 2358999999999876432 233346889999999998764 33445555566
Q ss_pred CCCceEEEEeccCcHH-HHHH---HHHhcC--------------------------------CCeEEEeCcccc-ccccc
Q 008956 193 PARRQTLMYTATWPRE-VRKI---AADLLV--------------------------------NPVQVNIGNVDE-LAANK 235 (547)
Q Consensus 193 ~~~~q~l~~SAT~~~~-~~~~---~~~~l~--------------------------------~~~~i~i~~~~~-~~~~~ 235 (547)
... ..+++|+||-.+ ..++ +.-++. .|..+.....+. ...+.
T Consensus 318 ~a~-~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp 396 (1033)
T PLN03142 318 STN-YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 396 (1033)
T ss_pred hcC-cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC
Confidence 543 458889996421 1111 100000 000000000000 00000
Q ss_pred ceeEEEE--------------------------------------------------------------EcCccchHHHH
Q 008956 236 AITQHIE--------------------------------------------------------------VLAPMDKHRRL 253 (547)
Q Consensus 236 ~i~~~~~--------------------------------------------------------------~~~~~~k~~~l 253 (547)
.....+. .+....|...|
T Consensus 397 K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lL 476 (1033)
T PLN03142 397 KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLL 476 (1033)
T ss_pred ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHH
Confidence 0000000 01112333444
Q ss_pred HHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcC---CCcEEEEccccccCCCC
Q 008956 254 EQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAG---RSPVLVATDVAARGLDI 328 (547)
Q Consensus 254 ~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g---~~~ILVaT~~~~~GiDi 328 (547)
..++... ..+.++|||+.....++.|.++|... +.+..|+|.++..+|..+++.|+.. ...+|++|.+++.|||+
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 4444433 35679999999999999999999754 8899999999999999999999753 23578999999999999
Q ss_pred CCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEe
Q 008956 329 KDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFF 366 (547)
Q Consensus 329 p~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~ 366 (547)
+.+++||+||++|+|....|++||+.|.|++..+.++.
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 99999999999999999999999999999886554443
No 92
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=4.7e-27 Score=267.99 Aligned_cols=309 Identities=19% Similarity=0.248 Sum_probs=197.4
Q ss_pred CCCcHHHHHHHHHHhC-----CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 39 SSPTPIQAQSWPIALQ-----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~-----g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
..+++||.++|..+.+ .+.+|++++||||||.+++..+...+.. . ..+++|||+|+++|+.|+.+.|..+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~----~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-K----RFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-C----ccCeEEEEecHHHHHHHHHHHHHhc
Confidence 4689999999988763 3678999999999998755443333322 1 1358999999999999999999887
Q ss_pred ccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC-----CcCCCCeeEEEEecccccccC---------
Q 008956 114 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-----RISLNQVSYLVLDEADRMLDM--------- 179 (547)
Q Consensus 114 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-----~~~l~~~~~lVlDEaH~ll~~--------- 179 (547)
..........+++-..... ........|+|+|+++|...+... ...+..+++||+||||+....
T Consensus 487 ~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 487 KIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred ccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 5432211111111110000 011234789999999997765321 245678999999999995310
Q ss_pred ------CcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHH--------------hcCC---CeEEEeCccc-------
Q 008956 180 ------GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAAD--------------LLVN---PVQVNIGNVD------- 229 (547)
Q Consensus 180 ------g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~--------------~l~~---~~~i~i~~~~------- 229 (547)
.+...++.++..+. ...|+|||||......++.. ++.+ |..+......
T Consensus 565 ~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~ 642 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEK 642 (1123)
T ss_pred ccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccc
Confidence 12356777777653 45799999987544333221 1110 1222110000
Q ss_pred -c-cccccceeEEE--EEcCcc--------ch-------HHH-HHHHHHhc--CCCCeEEEEcCChHHHHHHHHHHhccc
Q 008956 230 -E-LAANKAITQHI--EVLAPM--------DK-------HRR-LEQILRSQ--EPGSKIIVFCSTKKMCDQLARNLTRQF 287 (547)
Q Consensus 230 -~-~~~~~~i~~~~--~~~~~~--------~k-------~~~-l~~~l~~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~ 287 (547)
+ ..........+ ...... ++ ... +..++... ....|+||||.++++|+.+++.|.+.+
T Consensus 643 ~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f 722 (1123)
T PRK11448 643 GEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAF 722 (1123)
T ss_pred cchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 0 00000000000 000000 00 001 11122111 223699999999999999998876532
Q ss_pred ----------ceEEEcCCCCHHHHHHHHHHhhcCCC-cEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCC
Q 008956 288 ----------GAAAIHGDKSQSERDYVLNQFRAGRS-PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA 356 (547)
Q Consensus 288 ----------~~~~ihg~~~~~~R~~~l~~F~~g~~-~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~ 356 (547)
.+..++++.+ +++.++++|+++.. .|||+++++.+|+|+|.+.+||++.++.|...|+|++||+.|.
T Consensus 723 ~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 723 KKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred HhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 3556888876 46779999999887 5899999999999999999999999999999999999999997
Q ss_pred CC
Q 008956 357 GA 358 (547)
Q Consensus 357 g~ 358 (547)
..
T Consensus 801 ~~ 802 (1123)
T PRK11448 801 CP 802 (1123)
T ss_pred Cc
Confidence 54
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1e-26 Score=253.03 Aligned_cols=311 Identities=20% Similarity=0.226 Sum_probs=227.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.|+++|.-..-.+.+| -|+.++||+|||+++.+|++..... +..+-|++||..||.|.++++..++...++
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~-------G~~V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT-------GKGVHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc-------CCCEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 6777787776555555 4899999999999999999744443 446889999999999999999999999999
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcCCc------CCCCeeEEEEecccccccC-------------
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRRI------SLNQVSYLVLDEADRMLDM------------- 179 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~~------~l~~~~~lVlDEaH~ll~~------------- 179 (547)
++.+++++.+..+....+ .++|+++||..| .|+|..... .+..+.++||||||.||=.
T Consensus 152 sv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~ 229 (830)
T PRK12904 152 SVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAE 229 (830)
T ss_pred eEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCC
Confidence 999999988776655544 489999999999 899876542 3567899999999987621
Q ss_pred ---CcHHHHHHHHHhCCC--------CceEEEE-----------------------------------------------
Q 008956 180 ---GFEPQIRKIVKEVPA--------RRQTLMY----------------------------------------------- 201 (547)
Q Consensus 180 ---g~~~~i~~i~~~l~~--------~~q~l~~----------------------------------------------- 201 (547)
.....+..++..+.. ..+.+.+
T Consensus 230 ~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 309 (830)
T PRK12904 230 DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIV 309 (830)
T ss_pred cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 122233344443322 1122222
Q ss_pred --------------------------------------------------------------eccCcHHHHHHHHHhcCC
Q 008956 202 --------------------------------------------------------------TATWPREVRKIAADLLVN 219 (547)
Q Consensus 202 --------------------------------------------------------------SAT~~~~~~~~~~~~l~~ 219 (547)
|.|...+..++...+-.
T Consensus 310 ~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l- 388 (830)
T PRK12904 310 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL- 388 (830)
T ss_pred ECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC-
Confidence 22221111111111100
Q ss_pred CeEEEeCcccccccccc-ee---EEEEEcCccchHHHHHHHHHh-cCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEc
Q 008956 220 PVQVNIGNVDELAANKA-IT---QHIEVLAPMDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIH 293 (547)
Q Consensus 220 ~~~i~i~~~~~~~~~~~-i~---~~~~~~~~~~k~~~l~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ih 293 (547)
. .+.+ +++.. +. ....+....+|...+...+.+ ...+.++||||+|+..++.+++.|.+. +++..+|
T Consensus 389 ~-vv~I------Ptnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLn 461 (830)
T PRK12904 389 D-VVVI------PTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLN 461 (830)
T ss_pred C-EEEc------CCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEecc
Confidence 0 0001 11111 11 112344556677777777755 356789999999999999999999865 8999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCc--------------------------------------cEEE
Q 008956 294 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI--------------------------------------RVVV 335 (547)
Q Consensus 294 g~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v--------------------------------------~~VI 335 (547)
+. +.+|+..+..|..+...|+|||++++||+||+-- -|||
T Consensus 462 ak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVi 539 (830)
T PRK12904 462 AK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVI 539 (830)
T ss_pred Cc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEE
Confidence 95 7899999999999999999999999999999742 2788
Q ss_pred EcCCCCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 336 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 336 ~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
-...+.|..---|..||+||.|.+|.+-.|++-+|.
T Consensus 540 gTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 540 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred ecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 888999999999999999999999999999887664
No 94
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.5e-26 Score=251.31 Aligned_cols=149 Identities=20% Similarity=0.280 Sum_probs=130.2
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCE
Q 008956 21 DATGFPPELLREVH-----NAGFSSP---TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPT 92 (547)
Q Consensus 21 ~~~~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~ 92 (547)
+.+.+..++.+.+. .+||..| +|+|.++++.++.++++|+.++||+|||++|++|++..+.. +..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-------g~~ 137 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-------GKP 137 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-------cCC
Confidence 45567888888877 6799988 99999999999999999999999999999999999987654 235
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcCCcCCC-------C
Q 008956 93 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRRISLN-------Q 164 (547)
Q Consensus 93 vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~~~l~-------~ 164 (547)
++||+||++||.|.++++..+....++++.+++|+.+...+...+ .|+|+|+||++| .+++....+.++ .
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~ 215 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRG 215 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhccc
Confidence 899999999999999999999998899999999999888776554 599999999999 999998766655 4
Q ss_pred eeEEEEeccccccc
Q 008956 165 VSYLVLDEADRMLD 178 (547)
Q Consensus 165 ~~~lVlDEaH~ll~ 178 (547)
+.++||||||.|+-
T Consensus 216 ~~~~IIDEADsmLi 229 (970)
T PRK12899 216 FYFAIIDEVDSILI 229 (970)
T ss_pred ccEEEEechhhhhh
Confidence 58999999998873
No 95
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=246.17 Aligned_cols=307 Identities=19% Similarity=0.207 Sum_probs=227.0
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 118 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~ 118 (547)
.+|-.+|++||-++..|..++|.|+|.+|||+++.+++...... ..+++|.+|-++|..|-+..|+.-+...+
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h-------~TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH-------MTRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh-------ccceEecchhhhhccchHHHHHHhccccc
Confidence 48899999999999999999999999999999988776655444 56899999999999999999998877655
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceE
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 198 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~ 198 (547)
.++|+.. +...+.++|+|.+.|..+|.++.-.+.++.+|||||+|.+-|......+.+++-.+|+..++
T Consensus 369 ----LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~ 437 (1248)
T KOG0947|consen 369 ----LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNF 437 (1248)
T ss_pred ----eeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceE
Confidence 4566553 33457899999999999999888778899999999999988887778888999999999999
Q ss_pred EEEeccCcHHHHHHHHHhcCC--CeEEEeCcccccccccceeEEEEEc--------------------------------
Q 008956 199 LMYTATWPREVRKIAADLLVN--PVQVNIGNVDELAANKAITQHIEVL-------------------------------- 244 (547)
Q Consensus 199 l~~SAT~~~~~~~~~~~~l~~--~~~i~i~~~~~~~~~~~i~~~~~~~-------------------------------- 244 (547)
|++|||.|+..+ ++. |+.. ...+.+..... .+....+++..-
T Consensus 438 IlLSATVPN~~E-FA~-WIGRtK~K~IyViST~k--RPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~ 513 (1248)
T KOG0947|consen 438 ILLSATVPNTLE-FAD-WIGRTKQKTIYVISTSK--RPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFV 513 (1248)
T ss_pred EEEeccCCChHH-HHH-HhhhccCceEEEEecCC--CccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccc
Confidence 999999986543 222 2111 11111111100 000000000000
Q ss_pred C-------------------------------ccchH--HHHHHHHHhc--CCCCeEEEEcCChHHHHHHHHHHhcc---
Q 008956 245 A-------------------------------PMDKH--RRLEQILRSQ--EPGSKIIVFCSTKKMCDQLARNLTRQ--- 286 (547)
Q Consensus 245 ~-------------------------------~~~k~--~~l~~~l~~~--~~~~k~IVF~~s~~~~~~l~~~L~~~--- 286 (547)
. ..++. ....+++... ...-++||||-+++.|+..+++|...
T Consensus 514 ~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~ 593 (1248)
T KOG0947|consen 514 DVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLT 593 (1248)
T ss_pred ccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcc
Confidence 0 00001 1122332221 12348999999999999999999430
Q ss_pred -------------------------------------cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCC
Q 008956 287 -------------------------------------FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIK 329 (547)
Q Consensus 287 -------------------------------------~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip 329 (547)
-+++++|+++-+--++-++..|..|-++||+||.++++|||.|
T Consensus 594 ~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMP 673 (1248)
T KOG0947|consen 594 DSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMP 673 (1248)
T ss_pred cchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCC
Confidence 1578999999999999999999999999999999999999999
Q ss_pred CccEEEEcCC--------CCChhhhHhhhccccCCCC--ceEEEEEec
Q 008956 330 DIRVVVNYDF--------PTGVEDYVHRIGRTGRAGA--TGVAYTFFG 367 (547)
Q Consensus 330 ~v~~VI~~d~--------p~s~~~yiQriGR~gR~g~--~g~~~~l~~ 367 (547)
.-++|+.-=. --.+-+|+|+.|||||.|- .|+++++..
T Consensus 674 ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 674 ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 8777774211 1267899999999999984 566655543
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.7e-26 Score=248.85 Aligned_cols=319 Identities=19% Similarity=0.273 Sum_probs=220.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.|++.|.-..-.+.+|+ |+...||+|||+++.+|++..... |..+-|++||..||.|-++++..+....++
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-------G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-------GKGVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-------CCCeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 77888887776666655 899999999999999998888776 779999999999999999999999999999
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHHH-HHHhcCC------cCCCCeeEEEEecccccccC-------------
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLN-DILEMRR------ISLNQVSYLVLDEADRMLDM------------- 179 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~-~~l~~~~------~~l~~~~~lVlDEaH~ll~~------------- 179 (547)
.+.++.++.+..+.. ..-.|+|+.+|...|- |+|.... .-...+.+.||||+|.+|=.
T Consensus 151 ~vg~i~~~~~~~~r~--~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~ 228 (796)
T PRK12906 151 TVGLNLNSMSPDEKR--AAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAE 228 (796)
T ss_pred eEEEeCCCCCHHHHH--HHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCC
Confidence 999998865544332 2335899999998763 4454321 12346789999999976611
Q ss_pred ---CcHHHHHHHHHhCCC-------------------CceEEEEecc--------------Cc-------HHHHHHHH--
Q 008956 180 ---GFEPQIRKIVKEVPA-------------------RRQTLMYTAT--------------WP-------REVRKIAA-- 214 (547)
Q Consensus 180 ---g~~~~i~~i~~~l~~-------------------~~q~l~~SAT--------------~~-------~~~~~~~~-- 214 (547)
.+...+..++..+.. ..+.+.+|.. +. ..+...+.
T Consensus 229 ~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~ 308 (796)
T PRK12906 229 KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRAN 308 (796)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHH
Confidence 011222222222211 0111222210 00 00000000
Q ss_pred HhcCCCeEEE--------eC------------------------------------------------------------
Q 008956 215 DLLVNPVQVN--------IG------------------------------------------------------------ 226 (547)
Q Consensus 215 ~~l~~~~~i~--------i~------------------------------------------------------------ 226 (547)
.++.....+. +.
T Consensus 309 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e 388 (796)
T PRK12906 309 YIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTE 388 (796)
T ss_pred HHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHH
Confidence 0000000000 00
Q ss_pred ----------cccccccccc-ee---EEEEEcCccchHHHHHHHHHh-cCCCCeEEEEcCChHHHHHHHHHHhcc-cceE
Q 008956 227 ----------NVDELAANKA-IT---QHIEVLAPMDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 290 (547)
Q Consensus 227 ----------~~~~~~~~~~-i~---~~~~~~~~~~k~~~l~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~ 290 (547)
..-..+++.. +. ....+....+|...+...+.. ...+.++||||+|+..++.+++.|.+. +++.
T Consensus 389 ~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~ 468 (796)
T PRK12906 389 EEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHA 468 (796)
T ss_pred HHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCee
Confidence 0000011111 11 112233445677777776643 456789999999999999999999865 8999
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCC---Ccc-----EEEEcCCCCChhhhHhhhccccCCCCceEE
Q 008956 291 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIK---DIR-----VVVNYDFPTGVEDYVHRIGRTGRAGATGVA 362 (547)
Q Consensus 291 ~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip---~v~-----~VI~~d~p~s~~~yiQriGR~gR~g~~g~~ 362 (547)
++|+++.+.+++.+.+.++.|. |+|||++++||+||+ +|. |||+++.|.+...|.|++||+||.|.+|.+
T Consensus 469 ~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 469 VLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred EecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 9999999888888888887777 999999999999995 888 999999999999999999999999999999
Q ss_pred EEEecCCCh
Q 008956 363 YTFFGDQDS 371 (547)
Q Consensus 363 ~~l~~~~~~ 371 (547)
..|++..|.
T Consensus 547 ~~~~sleD~ 555 (796)
T PRK12906 547 RFYLSLEDD 555 (796)
T ss_pred EEEEeccch
Confidence 999987764
No 97
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.6e-26 Score=239.66 Aligned_cols=313 Identities=20% Similarity=0.257 Sum_probs=237.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 118 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~ 118 (547)
.++-|+|..+|.++-.+..|||.|.|.+|||.++-+++...+.. ..+|++.+|-++|..|-+.++..-+...+
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-------kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-------KQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-------cCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 48899999999999999999999999999999999988888776 56999999999999999999998887765
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceE
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 198 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~ 198 (547)
+ .+|+.+. ...+..+|+|.+.|...|.++.--+..+..|||||+|-|-|....-.+.+-+-.+|++.+.
T Consensus 201 L----MTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~ 269 (1041)
T KOG0948|consen 201 L----MTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRF 269 (1041)
T ss_pred e----eecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceE
Confidence 5 3344332 2346789999999999999888888899999999999999876666666666678999999
Q ss_pred EEEeccCcHHHH--HHHHHhcCCCeEEEeCcccccccccceeE-----EEEEcCcc-----chHHHHHHHHHhc------
Q 008956 199 LMYTATWPREVR--KIAADLLVNPVQVNIGNVDELAANKAITQ-----HIEVLAPM-----DKHRRLEQILRSQ------ 260 (547)
Q Consensus 199 l~~SAT~~~~~~--~~~~~~l~~~~~i~i~~~~~~~~~~~i~~-----~~~~~~~~-----~k~~~l~~~l~~~------ 260 (547)
+++|||+|+..+ +.+...-..|..+...+....+....+.. .+.+++.. ++.......+...
T Consensus 270 VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~ 349 (1041)
T KOG0948|consen 270 VFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGK 349 (1041)
T ss_pred EEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccc
Confidence 999999996543 45555556677665544332111111000 01111111 1111122222110
Q ss_pred -------------------------------CCCCeEEEEcCChHHHHHHHHHHhcc-----------------------
Q 008956 261 -------------------------------EPGSKIIVFCSTKKMCDQLARNLTRQ----------------------- 286 (547)
Q Consensus 261 -------------------------------~~~~k~IVF~~s~~~~~~l~~~L~~~----------------------- 286 (547)
....++|||+-++++|+.+|-.+.+.
T Consensus 350 ~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Ls 429 (1041)
T KOG0948|consen 350 KKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLS 429 (1041)
T ss_pred cccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcC
Confidence 11248999999999999999887441
Q ss_pred -----------------cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEc----CC---CC-
Q 008956 287 -----------------FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNY----DF---PT- 341 (547)
Q Consensus 287 -----------------~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~----d~---p~- 341 (547)
-++.++|+++-+--++-++-.|.+|-+++|+||.+++.|+|.|.-++|+.- |- -|
T Consensus 430 eeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwi 509 (1041)
T KOG0948|consen 430 EEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWI 509 (1041)
T ss_pred hhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeee
Confidence 157889999999999999999999999999999999999999998887742 21 12
Q ss_pred ChhhhHhhhccccCCCC--ceEEEEEecCC
Q 008956 342 GVEDYVHRIGRTGRAGA--TGVAYTFFGDQ 369 (547)
Q Consensus 342 s~~~yiQriGR~gR~g~--~g~~~~l~~~~ 369 (547)
+--+|+|+.|||||.|. .|.|++++++.
T Consensus 510 ssGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 510 SSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cccceEEecccccccCCCCCceEEEEecCc
Confidence 56799999999999984 58888888754
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=6.1e-25 Score=210.38 Aligned_cols=296 Identities=21% Similarity=0.278 Sum_probs=206.5
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 40 SPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 40 ~~~~~Q~~~i~~il----~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
++++.|+.+-+.++ +.++.|++|-||+|||... .+.+....+ .|..+.+.+|....+.+++..++..+.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~------~G~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN------QGGRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh------cCCeEEEecCcccchHHHHHHHHHhhc
Confidence 88999999877665 4689999999999999764 444444433 277999999999999999999998876
Q ss_pred CCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHH-HHHhCCC
Q 008956 116 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRK-IVKEVPA 194 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~-i~~~l~~ 194 (547)
. ..+.+++|+.+.. .+ ..++|+|...|+++- +.++++||||+|.+--.. .+.+.. +-+....
T Consensus 170 ~--~~I~~Lyg~S~~~------fr-~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~-d~~L~~Av~~ark~ 232 (441)
T COG4098 170 N--CDIDLLYGDSDSY------FR-APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSD-DQSLQYAVKKARKK 232 (441)
T ss_pred c--CCeeeEecCCchh------cc-ccEEEEehHHHHHHH-------hhccEEEEeccccccccC-CHHHHHHHHHhhcc
Confidence 5 4556788876432 12 579999988887753 347889999999754221 223332 3334555
Q ss_pred CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCccccccccc-ceeEEEEEcCccch-H------HHHHHHHHhc-CCCCe
Q 008956 195 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK-AITQHIEVLAPMDK-H------RRLEQILRSQ-EPGSK 265 (547)
Q Consensus 195 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~-~i~~~~~~~~~~~k-~------~~l~~~l~~~-~~~~k 265 (547)
..-+|.+|||++++.+.-+..-- -..+.+.... .... .++. +.+.....| . ..|...++++ ..+.+
T Consensus 233 ~g~~IylTATp~k~l~r~~~~g~--~~~~klp~Rf--H~~pLpvPk-f~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 233 EGATIYLTATPTKKLERKILKGN--LRILKLPARF--HGKPLPVPK-FVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred cCceEEEecCChHHHHHHhhhCC--eeEeecchhh--cCCCCCCCc-eEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 66789999999987765543321 1122222211 1111 1222 222222222 1 2456666544 56789
Q ss_pred EEEEcCChHHHHHHHHHHhcccc---eEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEc-CCC-
Q 008956 266 IIVFCSTKKMCDQLARNLTRQFG---AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNY-DFP- 340 (547)
Q Consensus 266 ~IVF~~s~~~~~~l~~~L~~~~~---~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~-d~p- 340 (547)
++||+++++.++.+++.|++.++ ++.+|+. +..|.+.+++|++|++.|||+|.+++||+.+|+++++|.- .-+
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 99999999999999999987654 4566764 4567888999999999999999999999999999986643 332
Q ss_pred CChhhhHhhhccccCCC--CceEEEEEe
Q 008956 341 TGVEDYVHRIGRTGRAG--ATGVAYTFF 366 (547)
Q Consensus 341 ~s~~~yiQriGR~gR~g--~~g~~~~l~ 366 (547)
.+.+.++|..||+||.- ..|.++.|-
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 58889999999999974 345554333
No 99
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.3e-25 Score=247.19 Aligned_cols=312 Identities=21% Similarity=0.271 Sum_probs=231.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 36 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 36 ~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
.+| .|-++|++++-++..+.+|+|+||||+|||+++.+++...+.. +.+++|.+|.++|..|.+.++...+.
T Consensus 116 ~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-------~qrviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 116 YPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-------GQRVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred CCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-------CCceEeccchhhhhhhHHHHHHHHhh
Confidence 344 8999999999999999999999999999999998888877766 66899999999999999998877665
Q ss_pred CCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCC
Q 008956 116 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 195 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~ 195 (547)
...-.+..++|+.. +...+.++|+|.+.|.+++......+..+..|||||+|.|.+..-...+++++-.+|+.
T Consensus 188 dv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 188 DVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 33122334455543 34557899999999999999988889999999999999999998888899999999999
Q ss_pred ceEEEEeccCcHHHH--HHHHHhcCCCeEEEeCcccccccccceeEEEE-------EcCccch-----------------
Q 008956 196 RQTLMYTATWPREVR--KIAADLLVNPVQVNIGNVDELAANKAITQHIE-------VLAPMDK----------------- 249 (547)
Q Consensus 196 ~q~l~~SAT~~~~~~--~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~-------~~~~~~k----------------- 249 (547)
.+++++|||.|+..+ ..+...-..+..+.....-..+ ..+++. .++...+
T Consensus 261 v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvP----L~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~ 336 (1041)
T COG4581 261 VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVP----LEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFS 336 (1041)
T ss_pred CcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCC----eEEEEecCCceeeeecccccchhhcchhhhhhhhccc
Confidence 999999999985432 3333222333333222211111 111111 1111110
Q ss_pred ------------------------------HHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhc----------c---
Q 008956 250 ------------------------------HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR----------Q--- 286 (547)
Q Consensus 250 ------------------------------~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~----------~--- 286 (547)
...+...+.. ....++|+|+-+++.|+.++..+.. .
T Consensus 337 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~ 415 (1041)
T COG4581 337 EKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIR 415 (1041)
T ss_pred hhccccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHH
Confidence 0001111111 1235899999999999999887741 0
Q ss_pred ----------------c-------------ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEE--
Q 008956 287 ----------------F-------------GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV-- 335 (547)
Q Consensus 287 ----------------~-------------~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI-- 335 (547)
+ .+.++|++|-+..+..+...|..|-++||++|.+++.|+|.|.-++|+
T Consensus 416 ~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~ 495 (1041)
T COG4581 416 EIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTS 495 (1041)
T ss_pred HHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeee
Confidence 1 246789999999999999999999999999999999999999877776
Q ss_pred --EcC----CCCChhhhHhhhccccCCCCc--eEEEEEec
Q 008956 336 --NYD----FPTGVEDYVHRIGRTGRAGAT--GVAYTFFG 367 (547)
Q Consensus 336 --~~d----~p~s~~~yiQriGR~gR~g~~--g~~~~l~~ 367 (547)
.+| ..-++.+|+|..|||||.|.+ |.+++...
T Consensus 496 l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 496 LSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred eEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 222 123789999999999999854 66666643
No 100
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=1.4e-25 Score=206.35 Aligned_cols=165 Identities=31% Similarity=0.524 Sum_probs=142.0
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEE
Q 008956 42 TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISC 121 (547)
Q Consensus 42 ~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~ 121 (547)
||+|.++++.+++++++++.+|||+|||++++++++..+... . ..++||++|+++|+.|+.+.+.+++....+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~----~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-K----DARVLIIVPTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-S----SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-C----CceEEEEeeccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999888763 1 23999999999999999999999998878888
Q ss_pred EEecCCCCCh-hhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCC--CceE
Q 008956 122 TCLYGGAPKG-PQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA--RRQT 198 (547)
Q Consensus 122 ~~~~g~~~~~-~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~--~~q~ 198 (547)
..++++.... .....+...++|+|+||++|.+.+......+.++++|||||+|.+.++.+...+..++..+.. ..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred ccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 8888888755 333444567999999999999999876667778999999999999998888889888888743 5889
Q ss_pred EEEeccCcHHHHH
Q 008956 199 LMYTATWPREVRK 211 (547)
Q Consensus 199 l~~SAT~~~~~~~ 211 (547)
+++|||++..+++
T Consensus 156 i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 156 ILLSATLPSNVEK 168 (169)
T ss_dssp EEEESSSTHHHHH
T ss_pred EEEeeCCChhHhh
Confidence 9999999966654
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=5.5e-25 Score=235.17 Aligned_cols=338 Identities=20% Similarity=0.262 Sum_probs=236.8
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHH--HHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHH
Q 008956 26 PPELLREVHNAGFSSPTPIQAQSW--PIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 103 (547)
Q Consensus 26 ~~~l~~~l~~~g~~~~~~~Q~~~i--~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~ 103 (547)
+.........+|...++.||.+++ +.++.+++.|..+||+.|||+++-+.++..+... ...++++.|..+.+
T Consensus 209 ~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~------rr~~llilp~vsiv 282 (1008)
T KOG0950|consen 209 TKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR------RRNVLLILPYVSIV 282 (1008)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH------hhceeEecceeehh
Confidence 333444445669999999999997 6788999999999999999999988887766553 34789999999999
Q ss_pred HHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhc--CCcCCCCeeEEEEecccccccCCc
Q 008956 104 TQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM--RRISLNQVSYLVLDEADRMLDMGF 181 (547)
Q Consensus 104 ~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~--~~~~l~~~~~lVlDEaH~ll~~g~ 181 (547)
..-...+..+....++.+.+.+|..+.....+ ..++.|||.++-+.++.. ..-.+..+.+||+||.|.+.+.+.
T Consensus 283 ~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k----~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~r 358 (1008)
T KOG0950|consen 283 QEKISALSPFSIDLGFPVEEYAGRFPPEKRRK----RESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGR 358 (1008)
T ss_pred HHHHhhhhhhccccCCcchhhcccCCCCCccc----ceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecccc
Confidence 98888999999999999988887666544332 258999999986544431 122355688999999999988887
Q ss_pred HHHHHHHHHhC-----CCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCcc---------
Q 008956 182 EPQIRKIVKEV-----PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPM--------- 247 (547)
Q Consensus 182 ~~~i~~i~~~l-----~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~--------- 247 (547)
...++.++..+ ....|+|.||||+++. .++..++.......-...-++.....+-..+......
T Consensus 359 g~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l 436 (1008)
T KOG0950|consen 359 GAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANL 436 (1008)
T ss_pred chHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhh
Confidence 66666655442 2336799999999852 2223333221111100111111110011111111000
Q ss_pred -------chHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhc----------------------------------
Q 008956 248 -------DKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTR---------------------------------- 285 (547)
Q Consensus 248 -------~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~---------------------------------- 285 (547)
+..+.+..++.+. .++..+||||+++..|+.++..+..
T Consensus 437 ~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~V 516 (1008)
T KOG0950|consen 437 YSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPV 516 (1008)
T ss_pred hhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchH
Confidence 0012223333222 3445699999999999998866522
Q ss_pred -----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCC----CCChhhhHhhhccccCC
Q 008956 286 -----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF----PTGVEDYVHRIGRTGRA 356 (547)
Q Consensus 286 -----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~----p~s~~~yiQriGR~gR~ 356 (547)
.++++.+|++++.++|+.+...|+.|.+.|++||+.++.|+|+|...++|-.-+ +.+.-+|.|++|||||+
T Consensus 517 l~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~ 596 (1008)
T KOG0950|consen 517 LAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRT 596 (1008)
T ss_pred HheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhc
Confidence 125788999999999999999999999999999999999999999998885433 23778999999999999
Q ss_pred C--CceEEEEEecCCChHHHH
Q 008956 357 G--ATGVAYTFFGDQDSRYAS 375 (547)
Q Consensus 357 g--~~g~~~~l~~~~~~~~~~ 375 (547)
| ..|.+++++.+.+.....
T Consensus 597 gidT~GdsiLI~k~~e~~~~~ 617 (1008)
T KOG0950|consen 597 GIDTLGDSILIIKSSEKKRVR 617 (1008)
T ss_pred ccccCcceEEEeeccchhHHH
Confidence 7 467889888877765444
No 102
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.93 E-value=2.9e-24 Score=223.81 Aligned_cols=321 Identities=19% Similarity=0.247 Sum_probs=221.3
Q ss_pred CCcHHHHHHHHHHhC----CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 40 SPTPIQAQSWPIALQ----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~----g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
.+++||.+.++++.+ +-+.|+..++|.|||+..+ .++.++...... ..+.||+||...| .+|..++++|.+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~~~---~GPfLVi~P~StL-~NW~~Ef~rf~P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRKGI---PGPFLVIAPKSTL-DNWMNEFKRFTP 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhcCC---CCCeEEEeeHhhH-HHHHHHHHHhCC
Confidence 789999999998864 5689999999999998644 344444442222 3478999997555 778899999987
Q ss_pred CCceEEEEecCCCCChhhHH-Hh-h-CCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhC
Q 008956 116 SSRISCTCLYGGAPKGPQLK-DI-D-RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV 192 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~~-~~-~-~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l 192 (547)
. +.+++++|+......+. .+ . ...+|+|||++..+.-- ..+.--.|.|||||||||+.++. ..+.+++..+
T Consensus 242 ~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f 315 (971)
T KOG0385|consen 242 S--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREF 315 (971)
T ss_pred C--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcchh--hHHHHHHHHh
Confidence 6 78888998876544432 22 2 25899999999987642 23344578999999999998763 3445666666
Q ss_pred CCCceEEEEeccCcH-HHHHHHHH----------------------------------------h------------cCC
Q 008956 193 PARRQTLMYTATWPR-EVRKIAAD----------------------------------------L------------LVN 219 (547)
Q Consensus 193 ~~~~q~l~~SAT~~~-~~~~~~~~----------------------------------------~------------l~~ 219 (547)
.... .|++|.||-. ++.++... | +..
T Consensus 316 ~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred cccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 5444 4667777531 11111000 0 000
Q ss_pred --CeEEEeCcccc----------------------------------------------cccccceeEEEEEcCccchHH
Q 008956 220 --PVQVNIGNVDE----------------------------------------------LAANKAITQHIEVLAPMDKHR 251 (547)
Q Consensus 220 --~~~i~i~~~~~----------------------------------------------~~~~~~i~~~~~~~~~~~k~~ 251 (547)
...+.+..... ..+..........+....|..
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~ 474 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKML 474 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCccee
Confidence 00111100000 000000001111223334556
Q ss_pred HHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHh-cccceEEEcCCCCHHHHHHHHHHhhcCC---CcEEEEccccccCC
Q 008956 252 RLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGR---SPVLVATDVAARGL 326 (547)
Q Consensus 252 ~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~-~~~~~~~ihg~~~~~~R~~~l~~F~~g~---~~ILVaT~~~~~Gi 326 (547)
.|..+|..+ ..+.++|||.....+.+.|.+++. +.|..+.|.|.++.++|...++.|.... .-+|++|.+.+-||
T Consensus 475 vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 475 VLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 666666554 567899999999999999999987 4599999999999999999999998654 34689999999999
Q ss_pred CCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChH
Q 008956 327 DIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSR 372 (547)
Q Consensus 327 Dip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~ 372 (547)
|+..+++||.||..|+|..-+|+.-||+|.|++..+.+|--..+..
T Consensus 555 NL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 555 NLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 9999999999999999999999999999999877665554333333
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.2e-24 Score=234.25 Aligned_cols=319 Identities=19% Similarity=0.243 Sum_probs=218.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.|+++|.-. .+.-++.-|+.++||.|||++|.+|++..... +..|.||+|+.+||.|.++++..+....++
T Consensus 82 ~~ydVQliG--gl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~-------g~~VhIvT~ndyLA~RD~e~m~~l~~~lGl 152 (908)
T PRK13107 82 RHFDVQLLG--GMVLDSNRIAEMRTGEGKTLTATLPAYLNALT-------GKGVHVITVNDYLARRDAENNRPLFEFLGL 152 (908)
T ss_pred CcCchHHhc--chHhcCCccccccCCCCchHHHHHHHHHHHhc-------CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 455555543 33334566899999999999999999877665 567999999999999999999999999999
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcC-CcCC-----CCeeEEEEecccccccCC------------
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR-RISL-----NQVSYLVLDEADRMLDMG------------ 180 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~-~~~l-----~~~~~lVlDEaH~ll~~g------------ 180 (547)
++.++.++....+. ...-.|+|+++||..| .++|... .+.. ..+.++||||||.++-..
T Consensus 153 sv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~ 230 (908)
T PRK13107 153 TVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAE 230 (908)
T ss_pred eEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCc
Confidence 99999887765322 2223689999999999 8888866 3333 678999999999877321
Q ss_pred ----cHHHHHHHHHhCC-------------------CCceEEEEeccCcHHHHH--------------------------
Q 008956 181 ----FEPQIRKIVKEVP-------------------ARRQTLMYTATWPREVRK-------------------------- 211 (547)
Q Consensus 181 ----~~~~i~~i~~~l~-------------------~~~q~l~~SAT~~~~~~~-------------------------- 211 (547)
+...+..++..+. ...+.+.+|-.=...++.
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i 310 (908)
T PRK13107 231 DSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHV 310 (908)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHH
Confidence 1112222222211 111222222110000000
Q ss_pred --HHH--HhcCCCeEEE--------eCc----------------------------------------------------
Q 008956 212 --IAA--DLLVNPVQVN--------IGN---------------------------------------------------- 227 (547)
Q Consensus 212 --~~~--~~l~~~~~i~--------i~~---------------------------------------------------- 227 (547)
.++ .++.....+. +..
T Consensus 311 ~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GM 390 (908)
T PRK13107 311 NAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGM 390 (908)
T ss_pred HHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcc
Confidence 000 0000000000 000
Q ss_pred ------------------ccccccccc-ee---EEEEEcCccchHHHHHHHHH-hcCCCCeEEEEcCChHHHHHHHHHHh
Q 008956 228 ------------------VDELAANKA-IT---QHIEVLAPMDKHRRLEQILR-SQEPGSKIIVFCSTKKMCDQLARNLT 284 (547)
Q Consensus 228 ------------------~~~~~~~~~-i~---~~~~~~~~~~k~~~l~~~l~-~~~~~~k~IVF~~s~~~~~~l~~~L~ 284 (547)
.-..+++.. +. ....+....+|...+.+.+. ....+.++||||+|+..++.++..|.
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~ 470 (908)
T PRK13107 391 TGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMV 470 (908)
T ss_pred cCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHH
Confidence 000001100 00 01123334556655555544 34678899999999999999999998
Q ss_pred cc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCC---------------------------------
Q 008956 285 RQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD--------------------------------- 330 (547)
Q Consensus 285 ~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~--------------------------------- 330 (547)
+. +++.++|+++++.+++.+.+.|+.|. |+|||++++||+||.=
T Consensus 471 ~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 548 (908)
T PRK13107 471 KEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEV 548 (908)
T ss_pred HCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHH
Confidence 65 89999999999999999999999998 9999999999999972
Q ss_pred ----ccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 331 ----IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 331 ----v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
=-|||-...+.|..---|..||+||.|.+|.+..|++-.|.
T Consensus 549 ~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 549 VAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12788888999999999999999999999999999886654
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=3.1e-23 Score=230.85 Aligned_cols=324 Identities=19% Similarity=0.232 Sum_probs=215.1
Q ss_pred CCcHHHHHHHHHHhCC---C-cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 40 SPTPIQAQSWPIALQS---R-DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g---~-~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
..++.|..++..+++. . .+++.||||.|||.+++++++..+... .....+++++.|++++++++++.++++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~---~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK---IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc---ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 3489999999988764 4 678899999999999999988877663 11356999999999999999999998765
Q ss_pred CCceEEEEecCCCCChhhHH-------------Hh-hCCCcEEEECcHHHHHHHhc-CCcC---CCCeeEEEEecccccc
Q 008956 116 SSRISCTCLYGGAPKGPQLK-------------DI-DRGVDIVVATPGRLNDILEM-RRIS---LNQVSYLVLDEADRML 177 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~~-------------~~-~~~~~IlV~Tp~~L~~~l~~-~~~~---l~~~~~lVlDEaH~ll 177 (547)
...+....+.+......... .. ..-..+.++||......... .... .--.+++||||+|.+.
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 43332221222221111000 00 01144555555544432111 1111 1124789999999876
Q ss_pred cCCcHHHHHHHHHhCC-CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccc-cccccceeEEEEEcCccch--HHHH
Q 008956 178 DMGFEPQIRKIVKEVP-ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDE-LAANKAITQHIEVLAPMDK--HRRL 253 (547)
Q Consensus 178 ~~g~~~~i~~i~~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~-~~~~~~i~~~~~~~~~~~k--~~~l 253 (547)
+......+..++..+. ....+|++|||+|+...+.+...+.....+....... ......+.+. ......+. ....
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~ 430 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRK-ERVDVEDGPQEELI 430 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccc-cchhhhhhhhHhhh
Confidence 6533344444444433 3577999999999999988888776555443332200 0000001111 00000111 1223
Q ss_pred HHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcccc-eEEEcCCCCHHHHHHHHHHhh----cCCCcEEEEccccccCCCC
Q 008956 254 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFG-AAAIHGDKSQSERDYVLNQFR----AGRSPVLVATDVAARGLDI 328 (547)
Q Consensus 254 ~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~-~~~ihg~~~~~~R~~~l~~F~----~g~~~ILVaT~~~~~GiDi 328 (547)
.........+.+++|.|||+..|..+++.|+.... +..+|+.+...+|.+.++.++ .....|+|||++++.|||+
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 33444556778999999999999999999998766 999999999999999888554 5678899999999999999
Q ss_pred CCccEEEEcCCCCChhhhHhhhccccCCC--CceEEEEEecCCC
Q 008956 329 KDIRVVVNYDFPTGVEDYVHRIGRTGRAG--ATGVAYTFFGDQD 370 (547)
Q Consensus 329 p~v~~VI~~d~p~s~~~yiQriGR~gR~g--~~g~~~~l~~~~~ 370 (547)
+.+++|-==.| +...+||+||++|.| ..+.++++.....
T Consensus 511 -dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 511 -DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred -ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccC
Confidence 57777754444 889999999999999 5677777765443
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.1e-21 Score=215.06 Aligned_cols=302 Identities=20% Similarity=0.272 Sum_probs=209.6
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC-----
Q 008956 42 TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS----- 116 (547)
Q Consensus 42 ~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~----- 116 (547)
+....+.+.++.++.-+||+++||||||+. +|.+..-.- . ..+.++.+.-|.|--|..+++.+.+....
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~lle~g-~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFLLEEG-L---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHHHhhh-c---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 455666777778888899999999999974 343322111 1 22458899999986666666665544322
Q ss_pred CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc-cccCCcH-HHHHHHHHhCCC
Q 008956 117 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR-MLDMGFE-PQIRKIVKEVPA 194 (547)
Q Consensus 117 ~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~-ll~~g~~-~~i~~i~~~l~~ 194 (547)
.++++-.- ........|-++|.+.|+..+..... ++.+++|||||||+ .++.++. ..+..++...++
T Consensus 126 VGY~iRfe----------~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~ 194 (845)
T COG1643 126 VGYSIRFE----------SKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD 194 (845)
T ss_pred eeEEEEee----------ccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC
Confidence 23332110 11223468999999999998876544 88999999999995 3343332 334555677777
Q ss_pred CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEE-EEcCccc-hHHHHHHHHHhc--CCCCeEEEEc
Q 008956 195 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI-EVLAPMD-KHRRLEQILRSQ--EPGSKIIVFC 270 (547)
Q Consensus 195 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~-~~~~~~~-k~~~l~~~l~~~--~~~~k~IVF~ 270 (547)
+-++|.||||+..+ .+..++.+...+.+.... ..+..++ ....... -...+...+... ...+-+|||.
T Consensus 195 DLKiIimSATld~~---rfs~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFL 266 (845)
T COG1643 195 DLKLIIMSATLDAE---RFSAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFL 266 (845)
T ss_pred CceEEEEecccCHH---HHHHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEEC
Confidence 78999999998753 345566655555554322 1122222 1111222 233333333322 3356899999
Q ss_pred CChHHHHHHHHHHhc-c----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCC------
Q 008956 271 STKKMCDQLARNLTR-Q----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF------ 339 (547)
Q Consensus 271 ~s~~~~~~l~~~L~~-~----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~------ 339 (547)
+-.++++.+++.|.+ . +.+..+|+.++.+++.++++--..++.+|++||++++.+|.||++.+||+-+.
T Consensus 267 pG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y 346 (845)
T COG1643 267 PGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRY 346 (845)
T ss_pred CcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccc
Confidence 999999999999986 2 56888999999999999887777777779999999999999999999997553
Q ss_pred ------------CCChhhhHhhhccccCCCCceEEEEEecCC
Q 008956 340 ------------PTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 369 (547)
Q Consensus 340 ------------p~s~~~yiQriGR~gR~g~~g~~~~l~~~~ 369 (547)
|.|-.+..||.||+||. .+|.||-+|++.
T Consensus 347 ~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~ 387 (845)
T COG1643 347 DPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEE 387 (845)
T ss_pred ccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHH
Confidence 34667899999999999 579999999863
No 106
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.90 E-value=4.5e-21 Score=217.77 Aligned_cols=348 Identities=18% Similarity=0.203 Sum_probs=212.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcH
Q 008956 25 FPPELLREVHNAGFSSPTPIQAQSWP----IALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 100 (547)
Q Consensus 25 l~~~l~~~l~~~g~~~~~~~Q~~~i~----~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr 100 (547)
+++.+.+.+...||. ++|.|.++++ .+.+++++++.||||+|||++|++|++..... +.++||.+||+
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~-------~~~vvi~t~t~ 302 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT-------EKPVVISTNTK 302 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC-------CCeEEEEeCcH
Confidence 344677778778885 8999998776 45567899999999999999999999876542 45899999999
Q ss_pred HHHHHHHH-HHHHhccCC--ceEEEEecCCCCCh----------------------------------------------
Q 008956 101 ELATQIQD-EAVKFGKSS--RISCTCLYGGAPKG---------------------------------------------- 131 (547)
Q Consensus 101 ~L~~Q~~~-~~~~~~~~~--~i~~~~~~g~~~~~---------------------------------------------- 131 (547)
+|.+|+.. ++..+.... .++++.+.|...+-
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 444333222 24444443322110
Q ss_pred -------------------------hhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC------
Q 008956 132 -------------------------PQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG------ 180 (547)
Q Consensus 132 -------------------------~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g------ 180 (547)
...++....++|||+.+..|...+......+....+|||||||++.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcc
Confidence 0001122347899999999987765443345667899999999765310
Q ss_pred -c-----HH----------------------------------------------------------------HHHHHHH
Q 008956 181 -F-----EP----------------------------------------------------------------QIRKIVK 190 (547)
Q Consensus 181 -~-----~~----------------------------------------------------------------~i~~i~~ 190 (547)
+ .. .+...+.
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 0 00 0000000
Q ss_pred h-----------C-------------------------------------CCCceEEEEeccCcHH-HHHHHHHhcCCC-
Q 008956 191 E-----------V-------------------------------------PARRQTLMYTATWPRE-VRKIAADLLVNP- 220 (547)
Q Consensus 191 ~-----------l-------------------------------------~~~~q~l~~SAT~~~~-~~~~~~~~l~~~- 220 (547)
. + +....+|++|||+... -.+++...+.-+
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 0 0 1124678999998632 233444433321
Q ss_pred -eEEEeCcccccccccceeEEEE--Ec-----CccchHHHHHHHHHhc--CCCCeEEEEcCChHHHHHHHHHHhcc---c
Q 008956 221 -VQVNIGNVDELAANKAITQHIE--VL-----APMDKHRRLEQILRSQ--EPGSKIIVFCSTKKMCDQLARNLTRQ---F 287 (547)
Q Consensus 221 -~~i~i~~~~~~~~~~~i~~~~~--~~-----~~~~k~~~l~~~l~~~--~~~~k~IVF~~s~~~~~~l~~~L~~~---~ 287 (547)
....+. .............+. .. ....-...+...+.+. ....++|||+++.+.++.+++.|... .
T Consensus 623 ~~~~~~~-~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~ 701 (850)
T TIGR01407 623 VHFNTIE-PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFE 701 (850)
T ss_pred cccceec-CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcccc
Confidence 111111 000000011111110 00 0011112222222221 23368999999999999999999752 1
Q ss_pred ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCcc--EEEEcCCCCC-h---------------------
Q 008956 288 GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR--VVVNYDFPTG-V--------------------- 343 (547)
Q Consensus 288 ~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~--~VI~~d~p~s-~--------------------- 343 (547)
...++..+.. ..|..+++.|++++..||++|+.+++|||+|+.. .||...+|.. +
T Consensus 702 ~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~ 780 (850)
T TIGR01407 702 GYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFY 780 (850)
T ss_pred CceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchH
Confidence 2223333333 5788999999999999999999999999999765 6778887752 1
Q ss_pred --------hhhHhhhccccCCCCceEEEEEecCC--ChHHHHHHHHHHH
Q 008956 344 --------EDYVHRIGRTGRAGATGVAYTFFGDQ--DSRYASDLIKLLE 382 (547)
Q Consensus 344 --------~~yiQriGR~gR~g~~g~~~~l~~~~--~~~~~~~l~~~l~ 382 (547)
..+.|.+||+-|..++.-++++++.. ...+-..+.+.|.
T Consensus 781 ~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 781 DYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred HhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 23569999999998776677777654 4455566666554
No 107
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.89 E-value=8.2e-21 Score=204.34 Aligned_cols=282 Identities=24% Similarity=0.350 Sum_probs=196.6
Q ss_pred HHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 34 HNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 34 ~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
.++--..|+..|+-....++.|+++-+.||||.|||+--++..+..... ++++++|+||..|+.|+++.+.++
T Consensus 76 ~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k-------gkr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 76 KKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK-------GKRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred HHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc-------CCeEEEEecCHHHHHHHHHHHHHH
Confidence 3442339999999999999999999999999999997544433333322 679999999999999999999999
Q ss_pred ccCCc-eEEEEecCCC----CChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccC--------
Q 008956 114 GKSSR-ISCTCLYGGA----PKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-------- 179 (547)
Q Consensus 114 ~~~~~-i~~~~~~g~~----~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~-------- 179 (547)
....+ ..+..+|.+. .+.+.+.++.+ ..+|+|+|.+-|...+.. +.-.++++|++|++|.++..
T Consensus 149 ~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDriL 226 (1187)
T COG1110 149 AEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDRLL 226 (1187)
T ss_pred HhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHHHH
Confidence 85544 3333334433 33455666766 499999999887665542 22246899999999976642
Q ss_pred ---CcHHH-------HHHHHHh------------------------CCCCceEEEEeccCcHH--HHHHHHHhcCCCeEE
Q 008956 180 ---GFEPQ-------IRKIVKE------------------------VPARRQTLMYTATWPRE--VRKIAADLLVNPVQV 223 (547)
Q Consensus 180 ---g~~~~-------i~~i~~~------------------------l~~~~q~l~~SAT~~~~--~~~~~~~~l~~~~~i 223 (547)
||... +..+... -.+..+++..|||..+. -..+++.++.-.
T Consensus 227 ~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe--- 303 (1187)
T COG1110 227 RLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE--- 303 (1187)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc---
Confidence 23221 1111111 11346889999996432 235566665421
Q ss_pred EeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCC---hHHHHHHHHHHhcc-cceEEEcCCCCHH
Q 008956 224 NIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCST---KKMCDQLARNLTRQ-FGAAAIHGDKSQS 299 (547)
Q Consensus 224 ~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s---~~~~~~l~~~L~~~-~~~~~ihg~~~~~ 299 (547)
++...... .++...+... .....+.++++.... -.|||++. ++.++.++++|+.. +.+..+|+.
T Consensus 304 -vG~~~~~L--RNIvD~y~~~---~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~---- 371 (1187)
T COG1110 304 -VGSGGEGL--RNIVDIYVES---ESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE---- 371 (1187)
T ss_pred -cCccchhh--hheeeeeccC---ccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc----
Confidence 12111111 1233322222 555667778887765 56999999 99999999999976 889999883
Q ss_pred HHHHHHHHhhcCCCcEEEEc----cccccCCCCCC-ccEEEEcCCC
Q 008956 300 ERDYVLNQFRAGRSPVLVAT----DVAARGLDIKD-IRVVVNYDFP 340 (547)
Q Consensus 300 ~R~~~l~~F~~g~~~ILVaT----~~~~~GiDip~-v~~VI~~d~p 340 (547)
....++.|..|++++||.+ .++-+|||+|. +.++|+++.|
T Consensus 372 -~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 -KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred -chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 2567999999999999976 68999999996 7899999988
No 108
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.89 E-value=5.3e-21 Score=210.91 Aligned_cols=299 Identities=17% Similarity=0.177 Sum_probs=179.0
Q ss_pred CCcHHHHHHHHHHhC----------CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHH
Q 008956 40 SPTPIQAQSWPIALQ----------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDE 109 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~----------g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~ 109 (547)
.++++|.+++..++. .+..+++++||||||++++..+...+.. ...+++|||+|+.+|..|+.+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-----cCCCeEEEEECcHHHHHHHHHH
Confidence 479999999987642 2468999999999999876655444422 1256999999999999999999
Q ss_pred HHHhccCCceEEEEecCCCCChhhH-HHhhC-CCcEEEECcHHHHHHHhcC--CcCCCC-eeEEEEecccccccCCcHHH
Q 008956 110 AVKFGKSSRISCTCLYGGAPKGPQL-KDIDR-GVDIVVATPGRLNDILEMR--RISLNQ-VSYLVLDEADRMLDMGFEPQ 184 (547)
Q Consensus 110 ~~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~-~~~IlV~Tp~~L~~~l~~~--~~~l~~-~~~lVlDEaH~ll~~g~~~~ 184 (547)
+..+..... .. ......+ ..+.. ...|+|+|.++|...+... ...... -.+||+||||+.-. ..
T Consensus 313 f~~~~~~~~------~~-~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~----~~ 381 (667)
T TIGR00348 313 FQSLQKDCA------ER-IESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY----GE 381 (667)
T ss_pred HHhhCCCCC------cc-cCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc----hH
Confidence 999864211 01 1112222 22322 3689999999998644321 111111 13899999999642 23
Q ss_pred HHHHH-HhCCCCceEEEEeccCcHHHHH-HHHHhc--CCCeEEEeCcccccccccceeEEEEEc----------------
Q 008956 185 IRKIV-KEVPARRQTLMYTATWPREVRK-IAADLL--VNPVQVNIGNVDELAANKAITQHIEVL---------------- 244 (547)
Q Consensus 185 i~~i~-~~l~~~~q~l~~SAT~~~~~~~-~~~~~l--~~~~~i~i~~~~~~~~~~~i~~~~~~~---------------- 244 (547)
+...+ ..+| +...++|||||-..... ....+. ...........+...........+...
T Consensus 382 ~~~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 382 LAKNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred HHHHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHH
Confidence 43444 4455 45799999998532111 011110 011111111111000000000000000
Q ss_pred ----------Cccch-------------------HHH-HHHHHHh---c--CCCCeEEEEcCChHHHHHHHHHHhccc--
Q 008956 245 ----------APMDK-------------------HRR-LEQILRS---Q--EPGSKIIVFCSTKKMCDQLARNLTRQF-- 287 (547)
Q Consensus 245 ----------~~~~k-------------------~~~-l~~~l~~---~--~~~~k~IVF~~s~~~~~~l~~~L~~~~-- 287 (547)
.+..+ ... ...+++. . ....+++|||.++..|..+++.|.+.+
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 00000 000 0111111 1 224799999999999999999886542
Q ss_pred ----ceEEEcCCCCHH---------------------HHHHHHHHhhc-CCCcEEEEccccccCCCCCCccEEEEcCCCC
Q 008956 288 ----GAAAIHGDKSQS---------------------ERDYVLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYDFPT 341 (547)
Q Consensus 288 ----~~~~ihg~~~~~---------------------~R~~~l~~F~~-g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~ 341 (547)
...++++..+.. ..+.++++|++ +.++|||+++++..|+|.|.+++++...+-.
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk 620 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK 620 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc
Confidence 344555543332 22468889976 6889999999999999999999988666544
Q ss_pred ChhhhHhhhccccCC
Q 008956 342 GVEDYVHRIGRTGRA 356 (547)
Q Consensus 342 s~~~yiQriGR~gR~ 356 (547)
+ ..++|.+||+.|.
T Consensus 621 ~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 621 Y-HGLLQAIARTNRI 634 (667)
T ss_pred c-cHHHHHHHHhccc
Confidence 4 5689999999994
No 109
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=2.6e-21 Score=202.93 Aligned_cols=329 Identities=17% Similarity=0.227 Sum_probs=211.9
Q ss_pred CCCcHHHHHHHHHHhC----CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 39 SSPTPIQAQSWPIALQ----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~----g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
..+++||++.+.++.+ +..-|+-.++|.|||...+ ..+..+..... .-.++|||||. .|..||..+|..|.
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~k---~~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSGK---LTKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhccc---ccCceEEEccH-HHHHHHHHHHHHhC
Confidence 4567999999998864 5668999999999997432 23333333211 12589999996 78899999999998
Q ss_pred cCCceEEEEecCCCCC------------hhhHH-HhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCc
Q 008956 115 KSSRISCTCLYGGAPK------------GPQLK-DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF 181 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~~------------~~~~~-~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~ 181 (547)
... ++..+++.... ...+. .......|+|+|++.|.-. ...+.-..|+++|+||.|++-+..
T Consensus 279 p~~--rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn- 353 (923)
T KOG0387|consen 279 PPF--RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN- 353 (923)
T ss_pred cce--EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc-
Confidence 774 44444443331 11111 1122467999999887421 223444578999999999988763
Q ss_pred HHHHHHHHHhCCCCceEEEEeccCcH-HHHHHHHHh--------------------------------------------
Q 008956 182 EPQIRKIVKEVPARRQTLMYTATWPR-EVRKIAADL-------------------------------------------- 216 (547)
Q Consensus 182 ~~~i~~i~~~l~~~~q~l~~SAT~~~-~~~~~~~~~-------------------------------------------- 216 (547)
.++...+..++.. +.+.+|.|+-. .+.++...+
T Consensus 354 -s~islackki~T~-~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 354 -SKISLACKKIRTV-HRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred -cHHHHHHHhcccc-ceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 4444455555543 34555666431 111111100
Q ss_pred ---------------------c-CCCeEEEeCcccc----------------------------cccccceeEEE-----
Q 008956 217 ---------------------L-VNPVQVNIGNVDE----------------------------LAANKAITQHI----- 241 (547)
Q Consensus 217 ---------------------l-~~~~~i~i~~~~~----------------------------~~~~~~i~~~~----- 241 (547)
| .....+....... +..-..+..|-
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 0 0000000000000 00000000000
Q ss_pred ------------EEcCccchHHHHHHHHHh-cCCCCeEEEEcCChHHHHHHHHHHhc--ccceEEEcCCCCHHHHHHHHH
Q 008956 242 ------------EVLAPMDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTR--QFGAAAIHGDKSQSERDYVLN 306 (547)
Q Consensus 242 ------------~~~~~~~k~~~l~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~--~~~~~~ihg~~~~~~R~~~l~ 306 (547)
-.....-|...+..+++. ...+.++|+|..+..+.+.|...|.. .+.++.+.|..+...|..+++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 011112345555555543 24457999999999999999999983 599999999999999999999
Q ss_pred HhhcCCCc--EEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEE--EEEecCC---ChHHHHHHHH
Q 008956 307 QFRAGRSP--VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVA--YTFFGDQ---DSRYASDLIK 379 (547)
Q Consensus 307 ~F~~g~~~--ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~--~~l~~~~---~~~~~~~l~~ 379 (547)
.|+++..- +|++|.|.+-|+|+..++.||.||+-|+|..-.|+.-|+.|.|++..+ |.|++.. +..|.+++.+
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 99976643 588999999999999999999999999999999999999999987644 4455432 3334444443
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.88 E-value=1.5e-21 Score=207.10 Aligned_cols=306 Identities=20% Similarity=0.228 Sum_probs=198.4
Q ss_pred CCcHHHHHHHHHHhC----C-CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 40 SPTPIQAQSWPIALQ----S-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~----g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
.+++||..||..+.+ + +.+|+++.||+|||.+++..+...+.... .+++|+|+-+++|+.|.+..+..+.
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~-----~KRVLFLaDR~~Lv~QA~~af~~~~ 239 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGW-----VKRVLFLADRNALVDQAYGAFEDFL 239 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcch-----hheeeEEechHHHHHHHHHHHHHhC
Confidence 689999999987654 3 45899999999999987765555444322 4599999999999999999999887
Q ss_pred cCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC-----CcCCCCeeEEEEecccccccCCcHHHHHHHH
Q 008956 115 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-----RISLNQVSYLVLDEADRMLDMGFEPQIRKIV 189 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-----~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~ 189 (547)
+.... +..+.+ . .....++|.|+|++++...+... .+....+++||+|||||- .....+.|+
T Consensus 240 P~~~~-~n~i~~-~-------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~ 306 (875)
T COG4096 240 PFGTK-MNKIED-K-------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSIL 306 (875)
T ss_pred CCccc-eeeeec-c-------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHH
Confidence 65321 111111 1 11124799999999999887644 344556999999999994 456666788
Q ss_pred HhCCCCceEEEEeccCcHHHHHHHHHhc-------------------CCCeEEEeC--cccc-----------cccccce
Q 008956 190 KEVPARRQTLMYTATWPREVRKIAADLL-------------------VNPVQVNIG--NVDE-----------LAANKAI 237 (547)
Q Consensus 190 ~~l~~~~q~l~~SAT~~~~~~~~~~~~l-------------------~~~~~i~i~--~~~~-----------~~~~~~i 237 (547)
..+....+.+ ||||...+..-.-.++ ..+..+.+. ...+ ....+.+
T Consensus 307 dYFdA~~~gL--TATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i 384 (875)
T COG4096 307 DYFDAATQGL--TATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI 384 (875)
T ss_pred HHHHHHHHhh--ccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcccc
Confidence 7776555444 9997653332222222 111111111 0000 0000001
Q ss_pred --eEE-EEEcC-------ccch---HHHHHHHHHhc---CCCCeEEEEcCChHHHHHHHHHHhcccc------eEEEcCC
Q 008956 238 --TQH-IEVLA-------PMDK---HRRLEQILRSQ---EPGSKIIVFCSTKKMCDQLARNLTRQFG------AAAIHGD 295 (547)
Q Consensus 238 --~~~-~~~~~-------~~~k---~~~l~~~l~~~---~~~~k~IVF~~s~~~~~~l~~~L~~~~~------~~~ihg~ 295 (547)
... +...+ +..+ ...+.+.+..- ..-.|+||||.+..+|+.+...|...++ +..|.++
T Consensus 385 ~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d 464 (875)
T COG4096 385 DEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD 464 (875)
T ss_pred CcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc
Confidence 000 00000 0001 11223333331 1135999999999999999999987543 5667776
Q ss_pred CCHHHHHHHHHHhhc--CCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCC-------CceEEEEEe
Q 008956 296 KSQSERDYVLNQFRA--GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAG-------ATGVAYTFF 366 (547)
Q Consensus 296 ~~~~~R~~~l~~F~~--g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g-------~~g~~~~l~ 366 (547)
-.+.+ ..++.|.. ...+|.|+.+++..|||+|.|..+|++..-.|...|.|++||.-|.. ++..-++++
T Consensus 465 ~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~if 542 (875)
T COG4096 465 AEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIF 542 (875)
T ss_pred chhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEE
Confidence 55444 33555543 44568888899999999999999999999999999999999999963 234555555
Q ss_pred c
Q 008956 367 G 367 (547)
Q Consensus 367 ~ 367 (547)
+
T Consensus 543 D 543 (875)
T COG4096 543 D 543 (875)
T ss_pred E
Confidence 4
No 111
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=7.5e-20 Score=199.69 Aligned_cols=129 Identities=22% Similarity=0.353 Sum_probs=112.1
Q ss_pred hHHHHHHHHHh-cCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCC
Q 008956 249 KHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGL 326 (547)
Q Consensus 249 k~~~l~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~Gi 326 (547)
+...+...++. ...+.++||||++++.++.+++.|.+. +.+..+|+++++.+|..+++.|+.|++.|||||+++++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 44445555543 456789999999999999999999865 8899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcC-----CCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHH
Q 008956 327 DIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 378 (547)
Q Consensus 327 Dip~v~~VI~~d-----~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~ 378 (547)
|+|++++||++| .|.+..+|+||+|||+|. ..|.+++|++..+......+.
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHH
Confidence 999999999998 799999999999999998 689999999876655444433
No 112
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.86 E-value=5.4e-20 Score=191.28 Aligned_cols=303 Identities=20% Similarity=0.287 Sum_probs=200.0
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh-----ccC
Q 008956 42 TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF-----GKS 116 (547)
Q Consensus 42 ~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~-----~~~ 116 (547)
+.+-.+.+..+..++-+||.++||||||+. +|-+ +.+.- .....++.+.-|.|.-|..++.....- +..
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ--ipQy--L~eaG--~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ--IPQY--LAEAG--FASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEE 126 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc--HhHH--HHhcc--cccCCcEEeecCchHHHHHHHHHHHHHhCCCcCce
Confidence 455556777777888899999999999974 3422 22211 111235888899986655555443322 222
Q ss_pred CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccc-ccCC-cHHHHHHHHHhCCC
Q 008956 117 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM-LDMG-FEPQIRKIVKEVPA 194 (547)
Q Consensus 117 ~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~l-l~~g-~~~~i~~i~~~l~~ 194 (547)
.++.+-.- +. ......|.++|.+.|++.+.... .++++++|||||||+= +..+ ....+++++... +
T Consensus 127 VGY~IRFe--d~--------ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~ 194 (674)
T KOG0922|consen 127 VGYTIRFE--DS--------TSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-P 194 (674)
T ss_pred eeeEEEec--cc--------CCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-C
Confidence 33333211 11 11235899999999998766543 3789999999999951 1111 112333443333 3
Q ss_pred CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccch-HHHHHHH--HHhcCCCCeEEEEcC
Q 008956 195 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDK-HRRLEQI--LRSQEPGSKIIVFCS 271 (547)
Q Consensus 195 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k-~~~l~~~--l~~~~~~~k~IVF~~ 271 (547)
.-+++.+|||+.. +.+..|+.....+.+.... ..+...+......+- .+.+..+ +...++.+-+|||.+
T Consensus 195 ~LklIimSATlda---~kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLt 266 (674)
T KOG0922|consen 195 DLKLIIMSATLDA---EKFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLT 266 (674)
T ss_pred CceEEEEeeeecH---HHHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeC
Confidence 4679999999873 4556666665555443321 112222222111211 1222222 222355569999999
Q ss_pred ChHHHHHHHHHHhcc---c------ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCC---
Q 008956 272 TKKMCDQLARNLTRQ---F------GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF--- 339 (547)
Q Consensus 272 s~~~~~~l~~~L~~~---~------~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~--- 339 (547)
..++++.+++.|.+. . -+..+|+.++.+++.++.+.-..|..+|+++|++++..|.|+++.+||+-++
T Consensus 267 GqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~ 346 (674)
T KOG0922|consen 267 GQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQ 346 (674)
T ss_pred CHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEE
Confidence 999999999998763 1 1467999999999999988888899999999999999999999999997553
Q ss_pred ---------------CCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 340 ---------------PTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 340 ---------------p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
|-|-.+-.||.||+||.+ +|.||.+|++.+.
T Consensus 347 ~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 347 KKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred EeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 447778899999999995 6999999986543
No 113
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.86 E-value=2.2e-21 Score=211.48 Aligned_cols=319 Identities=16% Similarity=0.228 Sum_probs=213.5
Q ss_pred CCCcHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 39 SSPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il----~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
.+++.||.+.+++++ .+.++|+..++|.|||+..+ ..+..+..... .....|||+|.. -+..|..++..|.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~~---~~gpflvvvpls-t~~~W~~ef~~w~ 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSLQ---IHGPFLVVVPLS-TITAWEREFETWT 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHhhh---ccCCeEEEeehh-hhHHHHHHHHHHh
Confidence 689999999999876 47899999999999997432 22333322111 134789999975 4566777888877
Q ss_pred cCCceEEEEecCCCCChhhHHHhh----C-----CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHH
Q 008956 115 KSSRISCTCLYGGAPKGPQLKDID----R-----GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQI 185 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~~~~~~~~~~----~-----~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i 185 (547)
.+++++++|...-.+.++... . .++++++|++.++.-.. .+.--.+.+++|||||+|.+. ...+
T Consensus 444 ---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~~~l 516 (1373)
T KOG0384|consen 444 ---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND--ESKL 516 (1373)
T ss_pred ---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--HHHH
Confidence 478888888877666655431 1 48999999998864322 333446889999999998764 2333
Q ss_pred HHHHHhCCCCceEEEEeccCcH-HHHHHHHHh-cCCCeEEEeC-------------------------------cccccc
Q 008956 186 RKIVKEVPARRQTLMYTATWPR-EVRKIAADL-LVNPVQVNIG-------------------------------NVDELA 232 (547)
Q Consensus 186 ~~i~~~l~~~~q~l~~SAT~~~-~~~~~~~~~-l~~~~~i~i~-------------------------------~~~~~~ 232 (547)
...+..+.-+. -|++|.||-. .+.++...+ +..|..+... ..-+..
T Consensus 517 ~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 517 YESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 34455554443 4667777542 333333211 0111111000 000000
Q ss_pred cccceeEEEE------------------------------------------------EcCcc-ch----------HHHH
Q 008956 233 ANKAITQHIE------------------------------------------------VLAPM-DK----------HRRL 253 (547)
Q Consensus 233 ~~~~i~~~~~------------------------------------------------~~~~~-~k----------~~~l 253 (547)
......+.+. ++... ++ ...|
T Consensus 596 lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L 675 (1373)
T KOG0384|consen 596 LPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEAL 675 (1373)
T ss_pred CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHH
Confidence 0000001000 00000 00 0122
Q ss_pred H-------------HHHHh-cCCCCeEEEEcCChHHHHHHHHHHhc-ccceEEEcCCCCHHHHHHHHHHhhc---CCCcE
Q 008956 254 E-------------QILRS-QEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRA---GRSPV 315 (547)
Q Consensus 254 ~-------------~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~-~~~~~~ihg~~~~~~R~~~l~~F~~---g~~~I 315 (547)
. .+|.. ...+.+||||....++.+.|+++|.. .|+...|.|.+..+.|+.+++.|.. ....+
T Consensus 676 ~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 676 QALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 2 22222 24568999999999999999999985 5999999999999999999999985 45568
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCce--EEEEEecCCC
Q 008956 316 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATG--VAYTFFGDQD 370 (547)
Q Consensus 316 LVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g--~~~~l~~~~~ 370 (547)
|+||.+.+-|||+..+++||+||.-|+|..-+|+.-||+|.|++. .+|.|++...
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 999999999999999999999999999999999999999999875 5677777643
No 114
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=199.47 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=117.2
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc-CCc
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK-SSR 118 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~-~~~ 118 (547)
.|-.||.+.+..+-.+..++|+|||.+|||++...++-..+... + ...+|+++||++|+.|+...+...+. .+-
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes-D----~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES-D----SDVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc-C----CCEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 68899999999999999999999999999987766655555442 2 34899999999999999888776663 333
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhc---CCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCC
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM---RRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 195 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~---~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~ 195 (547)
...+.+.|.-..+-.+. .-.|.|+|+-|+.|..++.. ......++.++|+||+|.+.++.-...+..++... .
T Consensus 586 ~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~ 661 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--P 661 (1330)
T ss_pred ccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--C
Confidence 34444444443322222 12499999999999888775 34456789999999999988765555555555444 3
Q ss_pred ceEEEEeccCc
Q 008956 196 RQTLMYTATWP 206 (547)
Q Consensus 196 ~q~l~~SAT~~ 206 (547)
+.+|.+|||+.
T Consensus 662 CP~L~LSATig 672 (1330)
T KOG0949|consen 662 CPFLVLSATIG 672 (1330)
T ss_pred CCeeEEecccC
Confidence 56899999964
No 115
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.86 E-value=1.9e-19 Score=193.68 Aligned_cols=319 Identities=17% Similarity=0.192 Sum_probs=206.5
Q ss_pred CCCcHHHHHHHHHHhC---C-------CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHH
Q 008956 39 SSPTPIQAQSWPIALQ---S-------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQD 108 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~---g-------~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~ 108 (547)
..++|||++.+..+.. + ..+|+...+|+|||+..+..++..+.........-.++|||+|. .|+..|++
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 3679999999988754 2 24788889999999988888888777754422223588999995 89999999
Q ss_pred HHHHhccCCceEEEEecCCCCChhhHHH---h------hCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccC
Q 008956 109 EAVKFGKSSRISCTCLYGGAPKGPQLKD---I------DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 179 (547)
Q Consensus 109 ~~~~~~~~~~i~~~~~~g~~~~~~~~~~---~------~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~ 179 (547)
+|.+|.....+....+++.... .|.+ + .-...|++.+++.+.+.+. .+....+++||+||.|++.+.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~--~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKS--SWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHhccccccceeeeecccch--hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch
Confidence 9999998767777777776653 1111 1 1125689999999976665 455678899999999998765
Q ss_pred CcHHHHHHHHHhCCCCceEEEEeccCcH-HHHHHHHHh------------------------------------------
Q 008956 180 GFEPQIRKIVKEVPARRQTLMYTATWPR-EVRKIAADL------------------------------------------ 216 (547)
Q Consensus 180 g~~~~i~~i~~~l~~~~q~l~~SAT~~~-~~~~~~~~~------------------------------------------ 216 (547)
...+...+..+.-.+ -|++|.|+-. ++.+++.-+
T Consensus 392 --~s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~ 468 (776)
T KOG0390|consen 392 --DSLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQ 468 (776)
T ss_pred --hhHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHH
Confidence 345555566665544 4667888532 111111110
Q ss_pred -----cCCCeEEEeCcccccccccceeEEEEEcCccc-------------------------------------------
Q 008956 217 -----LVNPVQVNIGNVDELAANKAITQHIEVLAPMD------------------------------------------- 248 (547)
Q Consensus 217 -----l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~------------------------------------------- 248 (547)
.................+ ....++.++.+..
T Consensus 469 eL~~~t~~fi~rrt~~il~k~LP-~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 469 ELRELTNKFILRRTGDILLKYLP-GKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHHHhheeecccchhhhhCC-CceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 000000000000000000 0111111111111
Q ss_pred -------------------------------hHHHHHHHHHhc--CCCCeEEEEcCChHHHHHHHHHHhc-ccceEEEcC
Q 008956 249 -------------------------------KHRRLEQILRSQ--EPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHG 294 (547)
Q Consensus 249 -------------------------------k~~~l~~~l~~~--~~~~k~IVF~~s~~~~~~l~~~L~~-~~~~~~ihg 294 (547)
|...|..++... ....++++..|.+...+.+...++- .+.+..+||
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 111122222110 0112333334445555555444442 478999999
Q ss_pred CCCHHHHHHHHHHhhcCCCc---EEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEe
Q 008956 295 DKSQSERDYVLNQFRAGRSP---VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFF 366 (547)
Q Consensus 295 ~~~~~~R~~~l~~F~~g~~~---ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~ 366 (547)
.++..+|+.+++.|++.... +|.+|.+.+.||++-+++.||.||..|||..-.|++.|+.|.||+..|+++-
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 99999999999999864433 5678899999999999999999999999999999999999999988776554
No 116
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=3.7e-20 Score=173.82 Aligned_cols=187 Identities=43% Similarity=0.670 Sum_probs=154.6
Q ss_pred HCCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 35 NAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 35 ~~g~~~~~~~Q~~~i~~il~g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
..++..|+++|.++++.++.. +.+++.++||+|||.+++.+++..+.... ..++||++|+.+++.|+...+..+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 346789999999999999999 99999999999999988888888766521 358999999999999999999988
Q ss_pred ccCCceEEEEecCCCCChhhHHHhhCCC-cEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhC
Q 008956 114 GKSSRISCTCLYGGAPKGPQLKDIDRGV-DIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV 192 (547)
Q Consensus 114 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~-~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l 192 (547)
............++......+..+...+ +|+++|++.|.+.+.........+++|||||||.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 8665434455555555455666666666 999999999999998777777889999999999988756788888998888
Q ss_pred CCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeC
Q 008956 193 PARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 226 (547)
Q Consensus 193 ~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~ 226 (547)
+...+++++|||++.........++.....+...
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 8889999999999988888888887765555443
No 117
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.7e-19 Score=195.24 Aligned_cols=317 Identities=21% Similarity=0.239 Sum_probs=210.4
Q ss_pred CCCcHHHHHHHHHHhCC----CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 39 SSPTPIQAQSWPIALQS----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g----~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
..+.+-|..+++.+.+. +..++.+.||||||.+|+-.+-..+.. |+.+|||+|-.+|..|+.+.++..+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-------GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-------GKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-------CCEEEEEeccccchHHHHHHHHHHh
Confidence 46789999999998776 678999999999999998877777766 7899999999999999999999887
Q ss_pred cCCceEEEEecCCCC---ChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccC---C--cHHHH
Q 008956 115 KSSRISCTCLYGGAP---KGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM---G--FEPQI 185 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~---~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~---g--~~~~i 185 (547)
. .++..++++.. +...|.+... ...|+|+|-..| ...+.++.+|||||-|.-.-. + +...-
T Consensus 270 g---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 270 G---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred C---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 6 33444444443 3344555554 489999996655 345788999999999954311 1 21222
Q ss_pred HHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchH-----HHHHHHH-Hh
Q 008956 186 RKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKH-----RRLEQIL-RS 259 (547)
Q Consensus 186 ~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~~l-~~ 259 (547)
..++..-..+.++|+-|||+.-+....+.. .....+.+..... .........+.+.....+. ..|.+.+ +.
T Consensus 340 vA~~Ra~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~-~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 340 VAVLRAKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAG-RARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HHHHHHHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEcccccc-ccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 223334445678999999987665544422 2223333332222 1111111222222211111 2333333 34
Q ss_pred cCCCCeEEEEcCChH------------------------------------------------------------HHHHH
Q 008956 260 QEPGSKIIVFCSTKK------------------------------------------------------------MCDQL 279 (547)
Q Consensus 260 ~~~~~k~IVF~~s~~------------------------------------------------------------~~~~l 279 (547)
...++++|+|.|.+- -.+.+
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 456677777776543 34555
Q ss_pred HHHHhccc---ceEEEcCCCCHH--HHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCC------------C
Q 008956 280 ARNLTRQF---GAAAIHGDKSQS--ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT------------G 342 (547)
Q Consensus 280 ~~~L~~~~---~~~~ihg~~~~~--~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~------------s 342 (547)
++.|++.| ++..+..+.+.. .-+..+..|.+|+.+|||.|++++.|.|+|+++.|...|... .
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 55555543 577777777653 355789999999999999999999999999999866554321 1
Q ss_pred hhhhHhhhccccCCCCceEEEEEecCCChHHHH
Q 008956 343 VEDYVHRIGRTGRAGATGVAYTFFGDQDSRYAS 375 (547)
Q Consensus 343 ~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~ 375 (547)
..-+.|-.||+||.+++|.+++-....+.....
T Consensus 577 fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~ 609 (730)
T COG1198 577 FQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQ 609 (730)
T ss_pred HHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHH
Confidence 235678999999999999888776665554333
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.1e-19 Score=183.77 Aligned_cols=118 Identities=24% Similarity=0.378 Sum_probs=103.6
Q ss_pred HHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCC
Q 008956 252 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 330 (547)
Q Consensus 252 ~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~ 330 (547)
.+.++-.....+.++||-+-|+++++.|.++|.+. +.+..+|++...-+|..++.+++.|.++|||.-+.+-+|+|+|.
T Consensus 435 L~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPE 514 (663)
T COG0556 435 LLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPE 514 (663)
T ss_pred HHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcc
Confidence 34444444566789999999999999999999976 89999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCC-----CChhhhHhhhccccCCCCceEEEEEecCCC
Q 008956 331 IRVVVNYDFP-----TGVEDYVHRIGRTGRAGATGVAYTFFGDQD 370 (547)
Q Consensus 331 v~~VI~~d~p-----~s~~~yiQriGR~gR~g~~g~~~~l~~~~~ 370 (547)
|..|.++|.. .|..+++|-||||+|. -.|.++++.+.-.
T Consensus 515 VsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT 558 (663)
T COG0556 515 VSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKIT 558 (663)
T ss_pred eeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchhhh
Confidence 9999988854 4889999999999998 5688888776543
No 119
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.85 E-value=2.8e-20 Score=185.75 Aligned_cols=313 Identities=15% Similarity=0.190 Sum_probs=211.9
Q ss_pred CCCCCcHHHHHHHHHHhC-CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 37 GFSSPTPIQAQSWPIALQ-SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~-g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
=+..+.|+|++.+...+. |..+++..++|.|||+.++..+..+.. -...|||||. .|-..|.+++..|..
T Consensus 195 Lvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra--------EwplliVcPA-svrftWa~al~r~lp 265 (689)
T KOG1000|consen 195 LVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA--------EWPLLIVCPA-SVRFTWAKALNRFLP 265 (689)
T ss_pred HHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh--------cCcEEEEecH-HHhHHHHHHHHHhcc
Confidence 456788999999987765 678999999999999987654443322 3589999997 678889999999987
Q ss_pred CCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCC
Q 008956 116 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 195 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~ 195 (547)
.... +.++.+..+.. -.+.....|.|.+++.|..+-. -+.-..+.+||+||+|.+.+. -...++.++..+...
T Consensus 266 s~~p-i~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 266 SIHP-IFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVA 338 (689)
T ss_pred cccc-eEEEecccCCc---cccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhcc-chhhhhhhhhHHHHh
Confidence 6433 33344433322 2233446799999998865432 222345889999999976654 456677777777777
Q ss_pred ceEEEEeccCc----HH---------------HHHHHHHhcCC---CeEEEeCc------------------------cc
Q 008956 196 RQTLMYTATWP----RE---------------VRKIAADLLVN---PVQVNIGN------------------------VD 229 (547)
Q Consensus 196 ~q~l~~SAT~~----~~---------------~~~~~~~~l~~---~~~i~i~~------------------------~~ 229 (547)
.++|++|.|+. .+ ..++...+... +...+... ..
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999963 11 11111111000 00000000 00
Q ss_pred ccccccceeEEEEEcCc-------------------------------------cchHHHHHHHHHh-----cCCCCeEE
Q 008956 230 ELAANKAITQHIEVLAP-------------------------------------MDKHRRLEQILRS-----QEPGSKII 267 (547)
Q Consensus 230 ~~~~~~~i~~~~~~~~~-------------------------------------~~k~~~l~~~l~~-----~~~~~k~I 267 (547)
.++.. ..+.+..... ..|...+.+.+.. .....|.+
T Consensus 419 qLPpK--rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kfl 496 (689)
T KOG1000|consen 419 QLPPK--RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFL 496 (689)
T ss_pred hCCcc--ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEE
Confidence 00011 1111111000 0122223333333 23557999
Q ss_pred EEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhc-CCCcE-EEEccccccCCCCCCccEEEEcCCCCChh
Q 008956 268 VFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA-GRSPV-LVATDVAARGLDIKDIRVVVNYDFPTGVE 344 (547)
Q Consensus 268 VF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~-g~~~I-LVaT~~~~~GiDip~v~~VI~~d~p~s~~ 344 (547)
|||......+.+..++.+. ++...|.|..+..+|+.+.+.|+. .++.| +++..+++.|+++...+.|++..++|++.
T Consensus 497 VFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 497 VFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred EEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCc
Confidence 9999999999999999865 899999999999999999999985 44555 45668899999999999999999999999
Q ss_pred hhHhhhccccCCCCceEEEEEec
Q 008956 345 DYVHRIGRTGRAGATGVAYTFFG 367 (547)
Q Consensus 345 ~yiQriGR~gR~g~~g~~~~l~~ 367 (547)
-++|.-.|++|.|++..+.+.|.
T Consensus 577 vLlQAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 577 VLLQAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred eEEechhhhhhccccceeeEEEE
Confidence 99999999999999876655553
No 120
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=6.3e-21 Score=190.49 Aligned_cols=309 Identities=21% Similarity=0.249 Sum_probs=205.7
Q ss_pred CCCCcHHHHHHHHHHhCC---CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 38 FSSPTPIQAQSWPIALQS---RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 38 ~~~~~~~Q~~~i~~il~g---~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
-+.++|||+.++....-+ +.-||+.|+|+|||++-+-++ ..+ .+.+||||.+-.-++||..++..|.
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~ti---------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTI---------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eee---------cccEEEEecCccCHHHHHHHHHhhc
Confidence 347899999999988753 567888999999998644322 222 3489999999999999999999998
Q ss_pred cCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC--------CcCCCCeeEEEEecccccccCCcHHHHH
Q 008956 115 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--------RISLNQVSYLVLDEADRMLDMGFEPQIR 186 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~--------~~~l~~~~~lVlDEaH~ll~~g~~~~i~ 186 (547)
....-.++..+.+.. .....++.|+|+|+..+...-.+. .+.-..|.++|+||+|.+-.+-|...+.
T Consensus 370 ti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 655555555444332 223457899999998764321111 1224568999999999875443444443
Q ss_pred HHHHhCCCCceEEEEeccCcHHHHHHHHH-hcCCCeEEEeCcccccccccce--eEEEEE--------------------
Q 008956 187 KIVKEVPARRQTLMYTATWPREVRKIAAD-LLVNPVQVNIGNVDELAANKAI--TQHIEV-------------------- 243 (547)
Q Consensus 187 ~i~~~l~~~~q~l~~SAT~~~~~~~~~~~-~l~~~~~i~i~~~~~~~~~~~i--~~~~~~-------------------- 243 (547)
-+..-+ -|.+|||+-++..++... |+..|..+.. +.-++.....| .|..++
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEA-nWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEA-NWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhc-cHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 333333 489999987655443321 2222222211 11111111111 111111
Q ss_pred ----cCccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcccceEEEcCCCCHHHHHHHHHHhh-cCCCcEEE
Q 008956 244 ----LAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFR-AGRSPVLV 317 (547)
Q Consensus 244 ----~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg~~~~~~R~~~l~~F~-~g~~~ILV 317 (547)
+-...|......+++.+ ..+.|+|||..+.-....++-.|.+ ..|.|..+|.+|.++++.|+ +..++-++
T Consensus 519 ~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 519 MLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred heeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEE
Confidence 11123333344444322 3578999999998888888877765 34889999999999999998 45678888
Q ss_pred EccccccCCCCCCccEEEEcCCCC-ChhhhHhhhccccCCCC------ceEEEEEecCCCh
Q 008956 318 ATDVAARGLDIKDIRVVVNYDFPT-GVEDYVHRIGRTGRAGA------TGVAYTFFGDQDS 371 (547)
Q Consensus 318 aT~~~~~GiDip~v~~VI~~d~p~-s~~~yiQriGR~gR~g~------~g~~~~l~~~~~~ 371 (547)
.+.|....||+|.++++|++..-. |..+-.||+||..|+.+ ....|+|++....
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 899999999999999999988765 78899999999999843 2345666665433
No 121
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.8e-19 Score=185.58 Aligned_cols=305 Identities=18% Similarity=0.252 Sum_probs=209.0
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH----
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK---- 112 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~---- 112 (547)
.....+++-.+.+.++..++-+||.++||||||+ .+|-+.+ ..-- ...++++-+.-|.|.-|..++....+
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~--EaGy-tk~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLY--EAGY-TKGGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHH--hccc-ccCCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 4556688888999999999999999999999997 4553322 2111 11245688888999877777655443
Q ss_pred -hccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc-cccCCcH-HHHHHHH
Q 008956 113 -FGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR-MLDMGFE-PQIRKIV 189 (547)
Q Consensus 113 -~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~-ll~~g~~-~~i~~i~ 189 (547)
++...++.+..-. ......-|-++|.+.|+.-+.. ..+|..+++|||||||. .+..+.. ..+..|
T Consensus 337 kLG~eVGYsIRFEd----------cTSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDI- 404 (902)
T KOG0923|consen 337 KLGHEVGYSIRFED----------CTSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDI- 404 (902)
T ss_pred ccccccceEEEecc----------ccCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHH-
Confidence 2333444332110 0112346889999999876543 44578999999999995 3332221 122233
Q ss_pred HhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHH-HHHHHHh--cCCCCeE
Q 008956 190 KEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR-LEQILRS--QEPGSKI 266 (547)
Q Consensus 190 ~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~~l~~--~~~~~k~ 266 (547)
..+.+.-++|..|||+.. +-+..|+.+...+.+...- ..+..++....+.+-.+. +..+++- ..+.+-+
T Consensus 405 ar~RpdLKllIsSAT~DA---ekFS~fFDdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDI 476 (902)
T KOG0923|consen 405 ARFRPDLKLLISSATMDA---EKFSAFFDDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDI 476 (902)
T ss_pred HhhCCcceEEeeccccCH---HHHHHhccCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheeeEeccCCccE
Confidence 344567789999999864 3345566655555443321 112223333333333333 3333322 2455789
Q ss_pred EEEcCChHHHHHHHHHHhcc----------cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE
Q 008956 267 IVFCSTKKMCDQLARNLTRQ----------FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN 336 (547)
Q Consensus 267 IVF~~s~~~~~~l~~~L~~~----------~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~ 336 (547)
|||..-.++.+...+.|++. +-++.||+.++.+.+..+.+--..|..+|++||++++..|.|+++.+||+
T Consensus 477 LVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViD 556 (902)
T KOG0923|consen 477 LVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVID 556 (902)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEec
Confidence 99999999998888888652 45788999999999999988888899999999999999999999999997
Q ss_pred cCC------------------CCChhhhHhhhccccCCCCceEEEEEec
Q 008956 337 YDF------------------PTGVEDYVHRIGRTGRAGATGVAYTFFG 367 (547)
Q Consensus 337 ~d~------------------p~s~~~yiQriGR~gR~g~~g~~~~l~~ 367 (547)
-++ |-|..+-.||.||+||.| +|.|+.||+
T Consensus 557 pGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 557 PGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred CccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 554 446678889999999996 699999997
No 122
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=4.5e-20 Score=201.66 Aligned_cols=127 Identities=20% Similarity=0.310 Sum_probs=110.3
Q ss_pred EcCccchHHHHHHHHHh-cCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc
Q 008956 243 VLAPMDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 320 (547)
Q Consensus 243 ~~~~~~k~~~l~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~ 320 (547)
+....+|...+...+.. ...+.++||||+|++.++.+++.|.+. +++.++|+ .+.+|+..+..|..+...|+|||+
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 34445677777777754 356789999999999999999999865 88999997 688999999999999999999999
Q ss_pred ccccCCCCC---Ccc-----EEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 321 VAARGLDIK---DIR-----VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 321 ~~~~GiDip---~v~-----~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
+++||+||+ .|. +||.++.|.+...|.|++||+||.|.+|.+++|++..|.
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999999999 453 459999999999999999999999999999999987654
No 123
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.85 E-value=9e-20 Score=198.24 Aligned_cols=321 Identities=20% Similarity=0.291 Sum_probs=212.1
Q ss_pred CCcHHHHHHHHHHh--C--CCcEEEEcCCCchHHHHHHHH-HHHHhhhccCCCC-CCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 40 SPTPIQAQSWPIAL--Q--SRDIVAIAKTGSGKTLGYLLP-GFIHLKRCRNDPR-LGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 40 ~~~~~Q~~~i~~il--~--g~~vlv~a~TGsGKT~~~l~~-~l~~l~~~~~~~~-~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
.++.||++.++++. . +=+-|++..+|.|||+..+.- +..+..+....+. .....|||||. .|+-.|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 56899999998864 2 346899999999999965432 2223222111111 12358999996 8999999999999
Q ss_pred ccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCC
Q 008956 114 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP 193 (547)
Q Consensus 114 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~ 193 (547)
++. +++...+|....+..++.--...+|+|++|+.+.+-+. .+.-..|.|+|+||-|-+.+. ...+.+.++++.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 987 66666777665555555555568999999999864332 222346889999999987654 345555566665
Q ss_pred CCceEEEEeccCc-HHHHHHHH----------------------------------------------------------
Q 008956 194 ARRQTLMYTATWP-REVRKIAA---------------------------------------------------------- 214 (547)
Q Consensus 194 ~~~q~l~~SAT~~-~~~~~~~~---------------------------------------------------------- 214 (547)
...+ +.+|.||- +++.++..
T Consensus 1128 a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5543 55677742 11111100
Q ss_pred ---HhcCC-CeEE------E-------------------eCcc---cccccccc-------------eeEEE--EE----
Q 008956 215 ---DLLVN-PVQV------N-------------------IGNV---DELAANKA-------------ITQHI--EV---- 243 (547)
Q Consensus 215 ---~~l~~-~~~i------~-------------------i~~~---~~~~~~~~-------------i~~~~--~~---- 243 (547)
+.+.+ |.++ . +... .+...... ...+. ..
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 00000 0000 0 0000 00000000 00000 00
Q ss_pred -------------------cCccchHHHHHHHHHhcC---------------CCCeEEEEcCChHHHHHHHHHHhcc---
Q 008956 244 -------------------LAPMDKHRRLEQILRSQE---------------PGSKIIVFCSTKKMCDQLARNLTRQ--- 286 (547)
Q Consensus 244 -------------------~~~~~k~~~l~~~l~~~~---------------~~~k~IVF~~s~~~~~~l~~~L~~~--- 286 (547)
+....|...|.++|.+.. .+.++||||.-+.+++.+.+.|.+.
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 111234455666665432 3469999999999999999988764
Q ss_pred -cceEEEcCCCCHHHHHHHHHHhhcC-CCcEEE-EccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEE-
Q 008956 287 -FGAAAIHGDKSQSERDYVLNQFRAG-RSPVLV-ATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVA- 362 (547)
Q Consensus 287 -~~~~~ihg~~~~~~R~~~l~~F~~g-~~~ILV-aT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~- 362 (547)
+....+.|..++.+|.++.++|+++ .++||+ +|.|.+-|+|+.++++||+++-.|+|..-+|++.||+|.|++..+
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 2355789999999999999999988 677765 779999999999999999999999999999999999999998744
Q ss_pred -EEEecC
Q 008956 363 -YTFFGD 368 (547)
Q Consensus 363 -~~l~~~ 368 (547)
|.|++.
T Consensus 1447 VyRlItr 1453 (1549)
T KOG0392|consen 1447 VYRLITR 1453 (1549)
T ss_pred eeeehhc
Confidence 555553
No 124
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=1.9e-18 Score=190.13 Aligned_cols=143 Identities=21% Similarity=0.347 Sum_probs=116.2
Q ss_pred hHHHHHHHHHh-cCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCC
Q 008956 249 KHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGL 326 (547)
Q Consensus 249 k~~~l~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~Gi 326 (547)
+...+...+.. ...+.++||||+++..++.+++.|.+. +++..+|+++++.+|..+++.|+.|.+.|||||+++++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 34444444443 355789999999999999999999865 8899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCC-----CCChhhhHhhhccccCCCCceEEEEEecCC---------ChHHHHHHHHHHHHhcccccHHH
Q 008956 327 DIKDIRVVVNYDF-----PTGVEDYVHRIGRTGRAGATGVAYTFFGDQ---------DSRYASDLIKLLEGAKQQVPREL 392 (547)
Q Consensus 327 Dip~v~~VI~~d~-----p~s~~~yiQriGR~gR~g~~g~~~~l~~~~---------~~~~~~~l~~~l~~~~~~v~~~l 392 (547)
|+|++++||++|. |.+..+|+||+||+||. ..|.+++|++.. +....+++...++.....+|...
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 9999999999885 77999999999999997 789999999853 33334444444444444455443
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=8.9e-19 Score=186.68 Aligned_cols=314 Identities=18% Similarity=0.159 Sum_probs=210.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.|++.|.-..-.+++|+ |+.+.||.|||+++.+|++..... +..+.|++|+..||.|-++++..+....++
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~-------G~~VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ-------GRRVHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc-------CCCeEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 78899998888888764 778999999999999998887766 779999999999999999999999999999
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcCC------cCCCCeeEEEEecccccccC-------------
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLNQVSYLVLDEADRMLDM------------- 179 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEaH~ll~~------------- 179 (547)
++.++.+..+..+.... -.|+|+.+|...| .|+|.... .....+.+.||||+|.+|-.
T Consensus 149 svg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~ 226 (764)
T PRK12326 149 TVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTP 226 (764)
T ss_pred EEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCc
Confidence 99999887654433322 3589999998765 23443221 22355889999999976621
Q ss_pred --CcHHHHHHHHHhCCCC--------ceEEE-------------------------------------------------
Q 008956 180 --GFEPQIRKIVKEVPAR--------RQTLM------------------------------------------------- 200 (547)
Q Consensus 180 --g~~~~i~~i~~~l~~~--------~q~l~------------------------------------------------- 200 (547)
.....+..++..+... .+.+.
T Consensus 227 ~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 306 (764)
T PRK12326 227 GEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIV 306 (764)
T ss_pred chhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 1222233333333221 11222
Q ss_pred -------------------------------------------------------------EeccCcHHHHHHHHHhcCC
Q 008956 201 -------------------------------------------------------------YTATWPREVRKIAADLLVN 219 (547)
Q Consensus 201 -------------------------------------------------------------~SAT~~~~~~~~~~~~l~~ 219 (547)
||.|...+..++..-+ .-
T Consensus 307 ~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY-~l 385 (764)
T PRK12326 307 RDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY-DL 385 (764)
T ss_pred ECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh-CC
Confidence 2222211111111111 00
Q ss_pred CeEEEeCcccccccccceeEEEEEcCccchHHHHHHHH-HhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCC
Q 008956 220 PVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKS 297 (547)
Q Consensus 220 ~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l-~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~ 297 (547)
+ .+.+...... ..... ....+....+|...+.+.+ .....+.++||.|.+++..+.+++.|.+. ++..++++.-.
T Consensus 386 ~-Vv~IPtnkp~-~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 386 G-VSVIPPNKPN-IREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred c-EEECCCCCCc-eeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 0 0011100000 00000 1122333445665555554 44578899999999999999999999876 88888988755
Q ss_pred HHHHHHHHHHhhcCC-CcEEEEccccccCCCCCC---------------ccEEEEcCCCCChhhhHhhhccccCCCCceE
Q 008956 298 QSERDYVLNQFRAGR-SPVLVATDVAARGLDIKD---------------IRVVVNYDFPTGVEDYVHRIGRTGRAGATGV 361 (547)
Q Consensus 298 ~~~R~~~l~~F~~g~-~~ILVaT~~~~~GiDip~---------------v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~ 361 (547)
..+-+.+-+ .|+ -.|.|||++++||.||.- =-|||-...+.|...-.|..||+||.|.+|.
T Consensus 463 ~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 444333322 343 459999999999999972 2389999999999999999999999999999
Q ss_pred EEEEecCCCh
Q 008956 362 AYTFFGDQDS 371 (547)
Q Consensus 362 ~~~l~~~~~~ 371 (547)
+..|++-+|.
T Consensus 540 s~f~lSleDd 549 (764)
T PRK12326 540 SVFFVSLEDD 549 (764)
T ss_pred eeEEEEcchh
Confidence 9988876554
No 126
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.83 E-value=6.5e-19 Score=192.72 Aligned_cols=315 Identities=17% Similarity=0.204 Sum_probs=214.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc-cCCc
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG-KSSR 118 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~-~~~~ 118 (547)
..+..+.+.+.++.++..++++++||+|||+..-.-++....... ...++++--|.|--|.-+++...+-- ...+
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 447788888999999999999999999999865554555443322 35578888999877777766654432 2222
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc-cccCCcHHHHHHHHHhCCCCce
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR-MLDMGFEPQIRKIVKEVPARRQ 197 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~-ll~~g~~~~i~~i~~~l~~~~q 197 (547)
-.|...+.-. ........+++||.+.|++.+.. .-.+..+..||+||+|. -.+.+|.-.+.+.+-...+.-+
T Consensus 249 ~~VGYqvrl~------~~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 249 EEVGYQVRLE------SKRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred CeeeEEEeee------cccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 1111111101 11122368999999999998876 44578899999999995 3344455555555555557889
Q ss_pred EEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccc-----------cc---eeEE------------EEEcCccchHH
Q 008956 198 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAAN-----------KA---ITQH------------IEVLAPMDKHR 251 (547)
Q Consensus 198 ~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~-----------~~---i~~~------------~~~~~~~~k~~ 251 (547)
+++||||+. .+.+..++.....+.+....-.... .. ..+. +.....+...+
T Consensus 322 vILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 322 VILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 999999987 3445555555444444321100000 00 0000 11112222333
Q ss_pred HHHHHH---HhcCCCCeEEEEcCChHHHHHHHHHHhc--------ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc
Q 008956 252 RLEQIL---RSQEPGSKIIVFCSTKKMCDQLARNLTR--------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 320 (547)
Q Consensus 252 ~l~~~l---~~~~~~~k~IVF~~s~~~~~~l~~~L~~--------~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~ 320 (547)
.+..++ ......+.+|||.+...++..+.+.|.. ++-+..+|+.++..+++.+...-..|..+|+++|.
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 333333 3344557999999999999999999964 24577889999999999999888899999999999
Q ss_pred ccccCCCCCCccEEEEcCC--------CC----------ChhhhHhhhccccCCCCceEEEEEecCC
Q 008956 321 VAARGLDIKDIRVVVNYDF--------PT----------GVEDYVHRIGRTGRAGATGVAYTFFGDQ 369 (547)
Q Consensus 321 ~~~~GiDip~v~~VI~~d~--------p~----------s~~~yiQriGR~gR~g~~g~~~~l~~~~ 369 (547)
+++..|.|++|-+||+.+. -. +...-.||.|||||. ++|.||.+|+..
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 9999999999999997543 21 455778999999999 789999999753
No 127
>COG4889 Predicted helicase [General function prediction only]
Probab=99.83 E-value=3.2e-20 Score=195.47 Aligned_cols=327 Identities=19% Similarity=0.234 Sum_probs=199.2
Q ss_pred cCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC----CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEE
Q 008956 18 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTV 93 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g----~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~v 93 (547)
..|+.... .++..+|..+.-.+|+|||+.|+..++++ ..--+.+.+|+|||++.|-. ...+.. .++
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLki-sEala~--------~~i 209 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKI-SEALAA--------ARI 209 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHH-HHHHhh--------hhe
Confidence 45655433 57777888888889999999999999875 22333456899999987643 222222 389
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCCh--------------------hhHH-----HhhCCCcEEEECc
Q 008956 94 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKG--------------------PQLK-----DIDRGVDIVVATP 148 (547)
Q Consensus 94 Lil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~--------------------~~~~-----~~~~~~~IlV~Tp 148 (547)
|+|+|+.+|..|...+|..-.. ..+....++++.... ..+. +...+.-|+++|+
T Consensus 210 L~LvPSIsLLsQTlrew~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTY 288 (1518)
T COG4889 210 LFLVPSISLLSQTLREWTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTY 288 (1518)
T ss_pred EeecchHHHHHHHHHHHhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcc
Confidence 9999999999999888865432 223333333322211 0111 1123567999999
Q ss_pred HHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCC-----CCceEEEEeccCcH---HHHH---------
Q 008956 149 GRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP-----ARRQTLMYTATWPR---EVRK--------- 211 (547)
Q Consensus 149 ~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~-----~~~q~l~~SAT~~~---~~~~--------- 211 (547)
+.|...-+....-+..+++||.|||||.........=...+..+. +..+.|.|||||.- ....
T Consensus 289 QSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l 368 (1518)
T COG4889 289 QSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAEL 368 (1518)
T ss_pred cchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcccee
Confidence 999988877777788999999999998653211110001111111 12345788998631 1111
Q ss_pred ---------------------HHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHH---HHH----HHHHhc---
Q 008956 212 ---------------------IAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR---RLE----QILRSQ--- 260 (547)
Q Consensus 212 ---------------------~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~---~l~----~~l~~~--- 260 (547)
+.+.++.++..+.+. .++............-....-+.+ .++ -+.+..
T Consensus 369 ~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvla-Vd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 369 SSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLA-VDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eccchhhhhchhhhcccHHHHHHhhhhccceEEEEE-echhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 112223333222221 111111111111111111000111 111 111111
Q ss_pred ----------CCCCeEEEEcCChHHHHHHHHHHhc-----------c---cc--eEEEcCCCCHHHHHHHHH---HhhcC
Q 008956 261 ----------EPGSKIIVFCSTKKMCDQLARNLTR-----------Q---FG--AAAIHGDKSQSERDYVLN---QFRAG 311 (547)
Q Consensus 261 ----------~~~~k~IVF~~s~~~~~~l~~~L~~-----------~---~~--~~~ihg~~~~~~R~~~l~---~F~~g 311 (547)
.+-.++|-||.++++...+++.+.+ . +. +..+.|.|+..+|...+. .|...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 1124788999998888877776632 2 22 334558899999866554 34567
Q ss_pred CCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCC
Q 008956 312 RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA 356 (547)
Q Consensus 312 ~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~ 356 (547)
+|+||-...++.+|||+|.++.||++++-.+..+.+|.+||+.|.
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999996
No 128
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.82 E-value=7.6e-19 Score=184.38 Aligned_cols=319 Identities=17% Similarity=0.272 Sum_probs=212.8
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 40 SPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 40 ~~~~~Q~~~i~~il----~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
++-+||.-.++++. ++-+.|+..++|.|||.. .++.+.++..... ...-|||||...| +.|..++.+|++
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~----~gpHLVVvPsSTl-eNWlrEf~kwCP 472 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN----PGPHLVVVPSSTL-ENWLREFAKWCP 472 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC----CCCcEEEecchhH-HHHHHHHHHhCC
Confidence 47899999999864 344679999999999964 4455555554322 2356999998655 778889999997
Q ss_pred CCceEEEEecCCCCChhhHHHhh----CCCcEEEECcHHHHHHHh-cCCcCCCCeeEEEEecccccccCCcHHHHHHHHH
Q 008956 116 SSRISCTCLYGGAPKGPQLKDID----RGVDIVVATPGRLNDILE-MRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK 190 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~L~~~l~-~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~ 190 (547)
. +++.+.+|.......++... ..++|+|+||.....--. +..+...+++++|+||+|.+.++. ...++.++.
T Consensus 473 s--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~ 549 (941)
T KOG0389|consen 473 S--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMS 549 (941)
T ss_pred c--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcc
Confidence 6 78888999887666655432 258999999976532111 112234568899999999877764 444444443
Q ss_pred hCCCCceEEEEeccCcH-HHHHHHH-------------------------------------------------------
Q 008956 191 EVPARRQTLMYTATWPR-EVRKIAA------------------------------------------------------- 214 (547)
Q Consensus 191 ~l~~~~q~l~~SAT~~~-~~~~~~~------------------------------------------------------- 214 (547)
- + ..+.|++|.||-. ++.+++.
T Consensus 550 I-~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 550 I-N-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred c-c-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2 2 3445777777421 1111100
Q ss_pred ---HhcCC-CeE---EEeCccc-------------------ccccc-----------------cce--eEEE--------
Q 008956 215 ---DLLVN-PVQ---VNIGNVD-------------------ELAAN-----------------KAI--TQHI-------- 241 (547)
Q Consensus 215 ---~~l~~-~~~---i~i~~~~-------------------~~~~~-----------------~~i--~~~~-------- 241 (547)
+.|.. |.. |...... ....+ ..+ ..++
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 00000 000 0000000 00000 000 0000
Q ss_pred -----------------------------------------------EEcCccchHHHHHHHHHhc-CCCCeEEEEcCCh
Q 008956 242 -----------------------------------------------EVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTK 273 (547)
Q Consensus 242 -----------------------------------------------~~~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~ 273 (547)
...-...|...|..+|.+. ..+.++|||....
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 0001123455566666554 4568999999999
Q ss_pred HHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCC-C-cEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhh
Q 008956 274 KMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR-S-PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 350 (547)
Q Consensus 274 ~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~-~-~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQri 350 (547)
.+.+.|...|.-. +....+.|.....+|+.++..|...+ + -+|++|.+.+.|||+.++++||.+|...+|-+-.|+-
T Consensus 788 qmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAE 867 (941)
T KOG0389|consen 788 QMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAE 867 (941)
T ss_pred HHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhH
Confidence 9999999999854 88999999999999999999998654 3 3688999999999999999999999999999999999
Q ss_pred ccccCCCCce--EEEEEecCC
Q 008956 351 GRTGRAGATG--VAYTFFGDQ 369 (547)
Q Consensus 351 GR~gR~g~~g--~~~~l~~~~ 369 (547)
-|++|.|+.. .++.|+++.
T Consensus 868 DRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred HHHHhhCCcceeEEEEEEecC
Confidence 9999999765 555666554
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=9.8e-18 Score=188.21 Aligned_cols=331 Identities=19% Similarity=0.201 Sum_probs=197.1
Q ss_pred HHCCCCCCcHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHH-H
Q 008956 34 HNAGFSSPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQ-D 108 (547)
Q Consensus 34 ~~~g~~~~~~~Q~~~i~~il----~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~-~ 108 (547)
...+| ++++-|.++...+. .++.+++.|+||+|||++|++|++.... +.++||++||++|++|+. +
T Consensus 240 ~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~--------~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 240 ALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD--------QRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred ccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC--------CCcEEEEeCcHHHHHHHHHH
Confidence 33355 79999999665544 4577889999999999999999877531 458999999999999994 5
Q ss_pred HHHHhccCCceEEEEecCCCCCh-----------------------------------------------hhHH------
Q 008956 109 EAVKFGKSSRISCTCLYGGAPKG-----------------------------------------------PQLK------ 135 (547)
Q Consensus 109 ~~~~~~~~~~i~~~~~~g~~~~~-----------------------------------------------~~~~------ 135 (547)
.+..+....++.+.++.|+..+- ..|.
T Consensus 311 ~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~ 390 (820)
T PRK07246 311 EVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDG 390 (820)
T ss_pred HHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccC
Confidence 56655544444444433322100 0011
Q ss_pred ------------------HhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC-----c-------HH--
Q 008956 136 ------------------DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-----F-------EP-- 183 (547)
Q Consensus 136 ------------------~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g-----~-------~~-- 183 (547)
+-...++|+|+.+..|...+.... .+..+++|||||||++.+.. . ..
T Consensus 391 ~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l 469 (820)
T PRK07246 391 NLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTI 469 (820)
T ss_pred CCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHH
Confidence 112346899999998887664433 36789999999999865311 0 00
Q ss_pred ------------------------------------------------HHHHH--------HHh---------C------
Q 008956 184 ------------------------------------------------QIRKI--------VKE---------V------ 192 (547)
Q Consensus 184 ------------------------------------------------~i~~i--------~~~---------l------ 192 (547)
.+..+ ... +
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~ 549 (820)
T PRK07246 470 QKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQS 549 (820)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 00000 000 0
Q ss_pred ---------------------CCCceEEEEeccCcH-HHHHHHHHhcCCCeEEEeCcccccccccceeEEEEE----cC-
Q 008956 193 ---------------------PARRQTLMYTATWPR-EVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEV----LA- 245 (547)
Q Consensus 193 ---------------------~~~~q~l~~SAT~~~-~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~----~~- 245 (547)
+....+|++|||++- ....+ ...+.-+............ -.+.+.. ..
T Consensus 550 ~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~-~~~lGl~~~~~~~~~~~~~----~~~~~~i~~~~p~~ 624 (820)
T PRK07246 550 EKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSL-ADLLGFEEYLFHKIEKDKK----QDQLVVVDQDMPLV 624 (820)
T ss_pred CcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcH-HHHcCCCccceecCCCChH----HccEEEeCCCCCCC
Confidence 111356788888751 11122 2222211111010000000 0111111 11
Q ss_pred ----ccchHHHHHHHHHh-cCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEc
Q 008956 246 ----PMDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT 319 (547)
Q Consensus 246 ----~~~k~~~l~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT 319 (547)
...-...+.+.+.. ...+++++|+++|.+..+.+++.|... +.+ ...+... .+..+++.|+++...||++|
T Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~ 701 (820)
T PRK07246 625 TETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGL 701 (820)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEec
Confidence 01112223222211 134579999999999999999998643 333 3334222 24668999999888899999
Q ss_pred cccccCCCCC--CccEEEEcCCCCC-h-----------------------------hhhHhhhccccCCCCceEEEEEec
Q 008956 320 DVAARGLDIK--DIRVVVNYDFPTG-V-----------------------------EDYVHRIGRTGRAGATGVAYTFFG 367 (547)
Q Consensus 320 ~~~~~GiDip--~v~~VI~~d~p~s-~-----------------------------~~yiQriGR~gR~g~~g~~~~l~~ 367 (547)
+.+++|||+| ....||...+|.. + ..+.|.+||.-|...+.-++++++
T Consensus 702 ~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 702 GSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred chhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 9999999998 3566777777742 2 135689999999976555666776
Q ss_pred CC--ChHHHHHHHHHHH
Q 008956 368 DQ--DSRYASDLIKLLE 382 (547)
Q Consensus 368 ~~--~~~~~~~l~~~l~ 382 (547)
.. ...+-+.+++.|.
T Consensus 782 ~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 782 RRILTKSYGKQILASLA 798 (820)
T ss_pred CcccccHHHHHHHHhCC
Confidence 53 3445566665554
No 130
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.5e-19 Score=185.66 Aligned_cols=337 Identities=21% Similarity=0.276 Sum_probs=200.7
Q ss_pred HHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHh-hhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-Hhcc-CCceEEE
Q 008956 46 AQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHL-KRCRNDPRLGPTVLVLSPTRELATQIQDEAV-KFGK-SSRISCT 122 (547)
Q Consensus 46 ~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l-~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~-~~~~-~~~i~~~ 122 (547)
++++++|..+.-+|||++||||||+. +|-+.+- -........+..+=|.-|.|.-|.-+++... .++. ...+.+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 34556666677789999999999974 3433221 1111222224477888898866666554432 2222 1223333
Q ss_pred EecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccc-cCC----cHHHHHHHHHhCCC---
Q 008956 123 CLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML-DMG----FEPQIRKIVKEVPA--- 194 (547)
Q Consensus 123 ~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll-~~g----~~~~i~~i~~~l~~--- 194 (547)
.-+.++ +.....|.++|.+.|+.-+.. .+.|..++.|||||||.=. +.+ ....+-.+-..+..
T Consensus 340 IRfd~t--------i~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 340 IRFDGT--------IGEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred EEeccc--------cCCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 333332 223468999999999988775 5568899999999999521 110 11111111111111
Q ss_pred ---CceEEEEeccCcHHHHHHHHHhcC-CCeEEEeCcccccccccceeEEEEEcCccch----HHHHHHHHHhcCCCCeE
Q 008956 195 ---RRQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANKAITQHIEVLAPMDK----HRRLEQILRSQEPGSKI 266 (547)
Q Consensus 195 ---~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k----~~~l~~~l~~~~~~~k~ 266 (547)
.-++|.||||+--....-.+.++. -|..+.+.... ..+..|+.-..+.+- ......+-+++. .+-|
T Consensus 411 ~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ-----fPVsIHF~krT~~DYi~eAfrKtc~IH~kLP-~G~I 484 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ-----FPVSIHFNKRTPDDYIAEAFRKTCKIHKKLP-PGGI 484 (1172)
T ss_pred ccCceeEEEEeeeEEecccccCceecCCCCceeeeeccc-----CceEEEeccCCCchHHHHHHHHHHHHhhcCC-CCcE
Confidence 457899999985433222222222 23333332221 123333333333222 122233333344 4689
Q ss_pred EEEcCChHHHHHHHHHHhccc-----------------------------------------------------------
Q 008956 267 IVFCSTKKMCDQLARNLTRQF----------------------------------------------------------- 287 (547)
Q Consensus 267 IVF~~s~~~~~~l~~~L~~~~----------------------------------------------------------- 287 (547)
|||+....+++.|++.|++.|
T Consensus 485 LVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ 564 (1172)
T KOG0926|consen 485 LVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASL 564 (1172)
T ss_pred EEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhh
Confidence 999999999999999996532
Q ss_pred -----------------------------------------ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCC
Q 008956 288 -----------------------------------------GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGL 326 (547)
Q Consensus 288 -----------------------------------------~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~Gi 326 (547)
-|..+++-++.+.+.++.+.-..|..-++|+|+|++..|
T Consensus 565 raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSL 644 (1172)
T KOG0926|consen 565 RAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSL 644 (1172)
T ss_pred hhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccc
Confidence 134556666777777777777778888999999999999
Q ss_pred CCCCccEEEEcCC--------CC----------ChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccc
Q 008956 327 DIKDIRVVVNYDF--------PT----------GVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQV 388 (547)
Q Consensus 327 Dip~v~~VI~~d~--------p~----------s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v 388 (547)
.||++.+||+.+. -. |-.+--||.|||||.| +|.||.||+. +-+...+.++-.......
T Consensus 645 TIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS--AVf~~~Fe~fS~PEIlk~ 721 (1172)
T KOG0926|consen 645 TIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS--AVFSNDFEEFSLPEILKK 721 (1172)
T ss_pred ccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh--HHhhcchhhhccHHHhhC
Confidence 9999999997553 22 3334569999999996 5999999964 233334444444444555
Q ss_pred cHHHHHHHHcCCCC
Q 008956 389 PRELRDMASRGGGM 402 (547)
Q Consensus 389 ~~~l~~l~~~~~g~ 402 (547)
|.+-.-|.+..++.
T Consensus 722 Pve~lvLqMKsMnI 735 (1172)
T KOG0926|consen 722 PVESLVLQMKSMNI 735 (1172)
T ss_pred cHHHHHHHHHhcCc
Confidence 55544444444443
No 131
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=8.4e-18 Score=173.58 Aligned_cols=304 Identities=18% Similarity=0.213 Sum_probs=197.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc--
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG-- 114 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~-- 114 (547)
.|.....++.+.+..+..++-+||+++||||||+. +|- ++...- ......+-+.-|.|.-|..++.....-.
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~Q--yL~edG--Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQ--YLYEDG--YADNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhh--hHH--HHHhcc--cccCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 45666778888888888889999999999999974 222 222211 1113467777898887777776654432
Q ss_pred ---cCCceEE--EEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc-cccCCcHHHHHHH
Q 008956 115 ---KSSRISC--TCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR-MLDMGFEPQIRKI 188 (547)
Q Consensus 115 ---~~~~i~~--~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~-ll~~g~~~~i~~i 188 (547)
...++.+ ..+++ ....|-++|.+.|+.-... .-.|.++++||+||||. .++.+..--+.+.
T Consensus 427 ~lG~~VGYsIRFEdvT~------------~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslNtDilfGllk~ 493 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTS------------EDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLNTDILFGLLKK 493 (1042)
T ss_pred ccccccceEEEeeecCC------------CceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccchHHHHHHHHH
Confidence 2222222 11221 2246889999999875443 33477899999999995 3332222222222
Q ss_pred HHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHH-HHHHHHH--hcCCCCe
Q 008956 189 VKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR-RLEQILR--SQEPGSK 265 (547)
Q Consensus 189 ~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~~l~--~~~~~~k 265 (547)
+-.-..+.++|.+|||+.. +-+..|+.+...+.+..... .+...+.....++-.+ .+...+. .....+.
T Consensus 494 ~larRrdlKliVtSATm~a---~kf~nfFgn~p~f~IpGRTy-----PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gd 565 (1042)
T KOG0924|consen 494 VLARRRDLKLIVTSATMDA---QKFSNFFGNCPQFTIPGRTY-----PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGD 565 (1042)
T ss_pred HHHhhccceEEEeeccccH---HHHHHHhCCCceeeecCCcc-----ceEEEeccCchHHHHHHHHhhheEeeccCCCCC
Confidence 2233346789999999863 33445555555555533210 1111111111111111 1222221 1233468
Q ss_pred EEEEcCChHHHHHHHHHHhc-----------ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEE
Q 008956 266 IIVFCSTKKMCDQLARNLTR-----------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVV 334 (547)
Q Consensus 266 ~IVF~~s~~~~~~l~~~L~~-----------~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~V 334 (547)
+|||..-.+.++..+..++. .+.+..|++.|+++.+.++.+.-..+..+++|||++++..|.||++.+|
T Consensus 566 ilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yV 645 (1042)
T KOG0924|consen 566 ILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYV 645 (1042)
T ss_pred EEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEE
Confidence 99999887766655554432 2468889999999999999888888999999999999999999999999
Q ss_pred EEcCC------------------CCChhhhHhhhccccCCCCceEEEEEecC
Q 008956 335 VNYDF------------------PTGVEDYVHRIGRTGRAGATGVAYTFFGD 368 (547)
Q Consensus 335 I~~d~------------------p~s~~~yiQriGR~gR~g~~g~~~~l~~~ 368 (547)
|+.++ |.|...--||.|||||.+ +|.||.+|++
T Consensus 646 ID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 646 IDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred EecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 98664 556677889999999995 6999999975
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=8.3e-18 Score=183.49 Aligned_cols=318 Identities=19% Similarity=0.209 Sum_probs=203.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.|+++|... .+.-++.-|+.+.||.|||+++.+|++..... +..|.|++|+..||.|-++++..++...++
T Consensus 82 ~~ydVQliG--g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~-------G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 82 RHFDVQLIG--GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS-------GKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred CcchhHHHh--hhHhccCccccccCCCCChHHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 555555544 44445667899999999999999999877666 779999999999999999999999999999
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcCC------cCCCCeeEEEEecccccccC-------------
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLNQVSYLVLDEADRMLDM------------- 179 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEaH~ll~~------------- 179 (547)
.+.++.+..+..+....+ .|+|+++|..-| .|+|.... .....+.++||||+|.+|=.
T Consensus 153 ~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~ 230 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAE 230 (913)
T ss_pred EEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCc
Confidence 999998876554433333 389999999886 34444321 12367899999999987621
Q ss_pred ---CcHHHHHHHHHhCCC-------------------CceEEEEecc-----------------Cc-----HHHHH----
Q 008956 180 ---GFEPQIRKIVKEVPA-------------------RRQTLMYTAT-----------------WP-----REVRK---- 211 (547)
Q Consensus 180 ---g~~~~i~~i~~~l~~-------------------~~q~l~~SAT-----------------~~-----~~~~~---- 211 (547)
.....+..++..+.. ..+.+.+|-. +. ..+..
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i 310 (913)
T PRK13103 231 DSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHV 310 (913)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHH
Confidence 011222222222210 1111111111 00 00000
Q ss_pred ---HH-HHhcCCCeEEE--------eCc----------------------------------------------------
Q 008956 212 ---IA-ADLLVNPVQVN--------IGN---------------------------------------------------- 227 (547)
Q Consensus 212 ---~~-~~~l~~~~~i~--------i~~---------------------------------------------------- 227 (547)
+. ..++.....+. +..
T Consensus 311 ~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGM 390 (913)
T PRK13103 311 YAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGM 390 (913)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccC
Confidence 00 00000000000 000
Q ss_pred ------------------ccccccccce----eEEEEEcCccchHHHHHHHHH-hcCCCCeEEEEcCChHHHHHHHHHHh
Q 008956 228 ------------------VDELAANKAI----TQHIEVLAPMDKHRRLEQILR-SQEPGSKIIVFCSTKKMCDQLARNLT 284 (547)
Q Consensus 228 ------------------~~~~~~~~~i----~~~~~~~~~~~k~~~l~~~l~-~~~~~~k~IVF~~s~~~~~~l~~~L~ 284 (547)
.-..+++..+ .....+....+|...+.+.+. ....+.++||-+.|++..+.+++.|+
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~ 470 (913)
T PRK13103 391 TGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLK 470 (913)
T ss_pred CCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH
Confidence 0000011100 111223444556666655554 34678999999999999999999998
Q ss_pred cc-cceEEEcCCCCHHHHHHHHHHhhcCC-CcEEEEccccccCCCCC---------------------------------
Q 008956 285 RQ-FGAAAIHGDKSQSERDYVLNQFRAGR-SPVLVATDVAARGLDIK--------------------------------- 329 (547)
Q Consensus 285 ~~-~~~~~ihg~~~~~~R~~~l~~F~~g~-~~ILVaT~~~~~GiDip--------------------------------- 329 (547)
+. ++..++++.....+-+.+. +.|. -.|.|||++++||.||.
T Consensus 471 ~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 547 (913)
T PRK13103 471 KEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQ 547 (913)
T ss_pred HcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHH
Confidence 65 7777777765544433333 3453 45999999999999995
Q ss_pred ----CccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 330 ----DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 330 ----~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
+=-|||-...+.|..---|..||+||.|.+|.+-.|++-.|.
T Consensus 548 V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 548 VIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 113788889999999999999999999999999988876543
No 133
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.76 E-value=4.6e-16 Score=177.80 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=90.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcccc---eEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCC--ccEEEE
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQFG---AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD--IRVVVN 336 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~~~---~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~--v~~VI~ 336 (547)
..+++|||+++.+..+.+++.|..... ..++.-+++...|..+++.|+.++-.||++|..+++|||+|+ +.+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 346899999999999999999975422 223333444456788999999988889999999999999996 578998
Q ss_pred cCCCC-Chh-----------------------------hhHhhhccccCCCCceEEEEEecCC--ChHHHHHHHHHHH
Q 008956 337 YDFPT-GVE-----------------------------DYVHRIGRTGRAGATGVAYTFFGDQ--DSRYASDLIKLLE 382 (547)
Q Consensus 337 ~d~p~-s~~-----------------------------~yiQriGR~gR~g~~g~~~~l~~~~--~~~~~~~l~~~l~ 382 (547)
..+|. ++. .+.|.+||+-|...+.-++++++.. ...|-+.+++.|.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 88875 222 3468899999998776677777654 4556666666654
No 134
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=4.3e-17 Score=162.84 Aligned_cols=323 Identities=17% Similarity=0.234 Sum_probs=200.8
Q ss_pred CCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEE
Q 008956 15 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVL 94 (547)
Q Consensus 15 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vL 94 (547)
+.++.|+..++++...+.+++..-...+.++.+-+..+.+++-++++++||||||+. +|-|........ ...+.
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~~----~~~v~ 95 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELSH----LTGVA 95 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHhh----cccee
Confidence 457889999999999999998766667777788888888888899999999999974 444433222111 13566
Q ss_pred EEcCcHHHHHHHHHHHHHhc-----cCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEE
Q 008956 95 VLSPTRELATQIQDEAVKFG-----KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLV 169 (547)
Q Consensus 95 il~Ptr~L~~Q~~~~~~~~~-----~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 169 (547)
-.-|.|.-|.+++.....-. ...++.+- .+.. .....-+-.||.+.|+.-.-. .-.+..+.+||
T Consensus 96 CTQprrvaamsva~RVadEMDv~lG~EVGysIr--------fEdC--~~~~T~Lky~tDgmLlrEams-~p~l~~y~vii 164 (699)
T KOG0925|consen 96 CTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIR--------FEDC--TSPNTLLKYCTDGMLLREAMS-DPLLGRYGVII 164 (699)
T ss_pred ecCchHHHHHHHHHHHHHHhccccchhcccccc--------cccc--CChhHHHHHhcchHHHHHHhh-CcccccccEEE
Confidence 66788877777665544322 12222111 0000 000011223444444432222 22367899999
Q ss_pred Eeccccc-ccCC-cHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCcc
Q 008956 170 LDEADRM-LDMG-FEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPM 247 (547)
Q Consensus 170 lDEaH~l-l~~g-~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~ 247 (547)
+||||.= +..+ ..-.++.++..- ++-+++.+|||+. ..-+..++.++..+.+..... +..++....+.
T Consensus 165 LDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~---a~Kfq~yf~n~Pll~vpg~~P------vEi~Yt~e~er 234 (699)
T KOG0925|consen 165 LDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLD---AEKFQRYFGNAPLLAVPGTHP------VEIFYTPEPER 234 (699)
T ss_pred echhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccc---hHHHHHHhCCCCeeecCCCCc------eEEEecCCCCh
Confidence 9999952 1111 112334444444 4788999999965 344566777777776654221 11111111111
Q ss_pred chHH-HHHHHH--HhcCCCCeEEEEcCChHHHHHHHHHHhcc----------cceEEEcCCCCHHHHHHHHHHhhc---C
Q 008956 248 DKHR-RLEQIL--RSQEPGSKIIVFCSTKKMCDQLARNLTRQ----------FGAAAIHGDKSQSERDYVLNQFRA---G 311 (547)
Q Consensus 248 ~k~~-~l~~~l--~~~~~~~k~IVF~~s~~~~~~l~~~L~~~----------~~~~~ihg~~~~~~R~~~l~~F~~---g 311 (547)
+..+ .+..++ ......+-+|||....++++..++.+.+. +.+..+| +.++..+.+.... |
T Consensus 235 DylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~ 310 (699)
T KOG0925|consen 235 DYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNG 310 (699)
T ss_pred hHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCC
Confidence 2222 222222 22234568999999999999999988742 3466677 3344444332221 2
Q ss_pred --CCcEEEEccccccCCCCCCccEEEEcCC------------------CCChhhhHhhhccccCCCCceEEEEEecCC
Q 008956 312 --RSPVLVATDVAARGLDIKDIRVVVNYDF------------------PTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 369 (547)
Q Consensus 312 --~~~ILVaT~~~~~GiDip~v~~VI~~d~------------------p~s~~~yiQriGR~gR~g~~g~~~~l~~~~ 369 (547)
..+|+|+|.+++..+.|+.+.+||+-++ |.|..+-.||.||+||. .+|.|+.+|++.
T Consensus 311 ~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 311 AYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred CccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 3569999999999999999999997654 55777889999999998 789999999753
No 135
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=3.1e-16 Score=169.61 Aligned_cols=310 Identities=20% Similarity=0.209 Sum_probs=205.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.|+++|.-..-.+.+| -|+.+.||-|||+++.+|++..... |..|-||+.+.-||..=++++..+....++
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~-------GkgVhVVTvNdYLA~RDae~mg~vy~fLGL 148 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT-------GKGVIVSTVNEYLAERDAEEMGKVFNFLGL 148 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc-------CCceEEEecchhhhhhhHHHHHHHHHHhCC
Confidence 6777777766555544 5799999999999999998766555 678999999999999999999999988999
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcCC------cCCCCeeEEEEeccccccc-C------------
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLNQVSYLVLDEADRMLD-M------------ 179 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEaH~ll~-~------------ 179 (547)
.+.++..+....+... .-.|+|+.+|..-| .|+|.... .....+.+.||||+|.+|= .
T Consensus 149 svG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~ 226 (925)
T PRK12903 149 SVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQS 226 (925)
T ss_pred ceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCc
Confidence 9988876554443323 33599999999776 35555332 1235678999999997661 1
Q ss_pred ---CcHHHHHHHHHhCCC-------CceEEEEec----------------------------------------------
Q 008956 180 ---GFEPQIRKIVKEVPA-------RRQTLMYTA---------------------------------------------- 203 (547)
Q Consensus 180 ---g~~~~i~~i~~~l~~-------~~q~l~~SA---------------------------------------------- 203 (547)
.+...+..++..+.. ..+.+.+|.
T Consensus 227 ~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~ 306 (925)
T PRK12903 227 NDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVR 306 (925)
T ss_pred cchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 022223333333321 112222222
Q ss_pred ---------------------------------------------------------------cCcHHHHHHHHHhcCCC
Q 008956 204 ---------------------------------------------------------------TWPREVRKIAADLLVNP 220 (547)
Q Consensus 204 ---------------------------------------------------------------T~~~~~~~~~~~~l~~~ 220 (547)
|...+..++..-+- -
T Consensus 307 dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~--l 384 (925)
T PRK12903 307 DGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYN--M 384 (925)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhC--C
Confidence 11111111111000 0
Q ss_pred eEEEeCcccccccccc-eeE---EEEEcCccchHHHHHHHHH-hcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcC
Q 008956 221 VQVNIGNVDELAANKA-ITQ---HIEVLAPMDKHRRLEQILR-SQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 294 (547)
Q Consensus 221 ~~i~i~~~~~~~~~~~-i~~---~~~~~~~~~k~~~l~~~l~-~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg 294 (547)
..+. .+++.. +.. ...+.....|...+...+. ....+.++||.|.+++..+.+++.|.+. ++..++++
T Consensus 385 ~Vv~------IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA 458 (925)
T PRK12903 385 RVNV------VPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA 458 (925)
T ss_pred CEEE------CCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc
Confidence 0000 011111 101 1223344566666655554 3467889999999999999999999865 88888888
Q ss_pred CCCHHHHHHHHHHhhcCC-CcEEEEccccccCCCCCCcc--------EEEEcCCCCChhhhHhhhccccCCCCceEEEEE
Q 008956 295 DKSQSERDYVLNQFRAGR-SPVLVATDVAARGLDIKDIR--------VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTF 365 (547)
Q Consensus 295 ~~~~~~R~~~l~~F~~g~-~~ILVaT~~~~~GiDip~v~--------~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l 365 (547)
.-...+-+.+. +.|. -.|.|||++++||.||.--. |||....|.|..---|..||+||.|.+|.+..|
T Consensus 459 k~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 459 KQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 64433333222 3553 45999999999999997322 899999999999999999999999999999988
Q ss_pred ecCCCh
Q 008956 366 FGDQDS 371 (547)
Q Consensus 366 ~~~~~~ 371 (547)
++-.|.
T Consensus 536 lSLeD~ 541 (925)
T PRK12903 536 ISLDDQ 541 (925)
T ss_pred EecchH
Confidence 876554
No 136
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.74 E-value=4.2e-15 Score=160.17 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=78.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcccc-eEEEcCCCCHHHHHHHHHHhhc----CCCcEEEEccccccCCCC--------
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQFG-AAAIHGDKSQSERDYVLNQFRA----GRSPVLVATDVAARGLDI-------- 328 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~~~-~~~ihg~~~~~~R~~~l~~F~~----g~~~ILVaT~~~~~GiDi-------- 328 (547)
.++.++|.+.+.+.++.+++.|...+. ...+.|+.+ .+..+++.|+. +.-.||++|+.+++|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 346899999999999999999987643 334455442 34567888886 478899999999999999
Q ss_pred C--CccEEEEcCCCCChh-------------------------hhHhhhccccCCCCc--eEEEEEecCC
Q 008956 329 K--DIRVVVNYDFPTGVE-------------------------DYVHRIGRTGRAGAT--GVAYTFFGDQ 369 (547)
Q Consensus 329 p--~v~~VI~~d~p~s~~-------------------------~yiQriGR~gR~g~~--g~~~~l~~~~ 369 (547)
| .+++||+..+|+.+. .+.|-+||.-|...+ .-++.+++..
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3 378899988885321 356889999998766 4455555543
No 137
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.73 E-value=5.2e-17 Score=142.37 Aligned_cols=118 Identities=47% Similarity=0.802 Sum_probs=107.6
Q ss_pred chHHHHHHHHHhcC-CCCeEEEEcCChHHHHHHHHHHhc-ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccC
Q 008956 248 DKHRRLEQILRSQE-PGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARG 325 (547)
Q Consensus 248 ~k~~~l~~~l~~~~-~~~k~IVF~~s~~~~~~l~~~L~~-~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~G 325 (547)
.|...+..++.+.. .+.++||||+++..++.+++.|++ ..++..+|+.++..+|..+++.|+++...|||+|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 57777777777653 567999999999999999999986 4789999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEE
Q 008956 326 LDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTF 365 (547)
Q Consensus 326 iDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l 365 (547)
+|+|.+++||+++.|++..+|+|++||++|.|+.+.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998877753
No 138
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.71 E-value=2.4e-16 Score=146.68 Aligned_cols=153 Identities=24% Similarity=0.206 Sum_probs=103.0
Q ss_pred CCcHHHHHHHHHHhC-------CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 008956 40 SPTPIQAQSWPIALQ-------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 112 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~-------g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~ 112 (547)
+|+++|.+++..++. .+.+++.+|||+|||.+++..+.... . ++||++|+..|+.|+.+.+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~---------~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R---------KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C---------EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c---------ceeEecCHHHHHHHHHHHHHH
Confidence 689999999999884 58899999999999998775444432 2 899999999999999999977
Q ss_pred hccCCceEEEEec-----------CCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCC-----------cCCCCeeEEEE
Q 008956 113 FGKSSRISCTCLY-----------GGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR-----------ISLNQVSYLVL 170 (547)
Q Consensus 113 ~~~~~~i~~~~~~-----------g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~-----------~~l~~~~~lVl 170 (547)
+............ ................+++++|.+.|........ .....+++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 6654322211111 1111111122233468899999999988765321 23456789999
Q ss_pred ecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcH
Q 008956 171 DEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPR 207 (547)
Q Consensus 171 DEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~ 207 (547)
||||++.... .+..++. .+...+|+|||||++
T Consensus 153 DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 153 DEAHHYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp ETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred ehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 9999964321 1555655 556779999999863
No 139
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.71 E-value=3.7e-16 Score=137.94 Aligned_cols=144 Identities=44% Similarity=0.566 Sum_probs=110.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 135 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 135 (547)
+++++.++||+|||.+++..+....... ..++++|++|++.|+.|+.+.+..+... .+.+..+.+.........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-----~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-----KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEK 74 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-----cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHH
Confidence 4689999999999998888777765441 2459999999999999999999888764 566666666655555555
Q ss_pred HhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccC
Q 008956 136 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 205 (547)
Q Consensus 136 ~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~ 205 (547)
......+|+++|++.+...+.........+++|||||+|.+....+...............+++++|||+
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 5566799999999999887776555566789999999999877655444333344556778899999996
No 140
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.70 E-value=1.5e-15 Score=165.28 Aligned_cols=127 Identities=23% Similarity=0.251 Sum_probs=96.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.|++.|.-.. +.-.+..|+.+.||.|||+++.+|++..... +..|-||+++..||.+-++++..+....++
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~-------G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT-------GKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc-------CCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 4666666554 4445678999999999999999998755544 678999999999999999999999999999
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHHH-HHHhcCC------cCCCCeeEEEEecccccc
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLN-DILEMRR------ISLNQVSYLVLDEADRML 177 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~-~~l~~~~------~~l~~~~~lVlDEaH~ll 177 (547)
.+.++.++.+..+... .-.|+|+.+|...|- |+|.... .....+.+.||||+|.+|
T Consensus 147 svg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 147 TVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred ceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9998877665544333 335899999997552 4444322 123568899999999765
No 141
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.70 E-value=8.7e-17 Score=172.85 Aligned_cols=319 Identities=17% Similarity=0.213 Sum_probs=202.9
Q ss_pred CCcHHHHHHHHHHhC----CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 40 SPTPIQAQSWPIALQ----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~----g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
++.+||...+.+..+ +-+-|+..+||.|||...+. ++.++...... ....||+||+..|.. |..++.+|..
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K~~---~GP~LvivPlstL~N-W~~Ef~kWaP 468 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHKQM---QGPFLIIVPLSTLVN-WSSEFPKWAP 468 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHccc---CCCeEEeccccccCC-chhhcccccc
Confidence 889999999988764 33678899999999986544 34444443332 347899999977755 5677878775
Q ss_pred CCceEEEEecCCCCChhhH-HH-hhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCC
Q 008956 116 SSRISCTCLYGGAPKGPQL-KD-IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP 193 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~-~~-~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~ 193 (547)
. +......|.......+ .. ....++|+++|++.++. .+..+..-+|.++||||.|+|.+.. -.+...+...-
T Consensus 469 S--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y 542 (1157)
T KOG0386|consen 469 S--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHY 542 (1157)
T ss_pred c--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhhccc
Confidence 5 4444444443333222 12 22459999999998875 2223344568899999999987631 11111111111
Q ss_pred CCceEEEEeccCc-------------------------------------------------------------------
Q 008956 194 ARRQTLMYTATWP------------------------------------------------------------------- 206 (547)
Q Consensus 194 ~~~q~l~~SAT~~------------------------------------------------------------------- 206 (547)
.....+++|.|+-
T Consensus 543 ~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlK 622 (1157)
T KOG0386|consen 543 RAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLK 622 (1157)
T ss_pred cchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhh
Confidence 1111223333311
Q ss_pred --------HHHHHHHHHh-----------cCCCeEEEeCc----cc------------ccccccceeEEE----------
Q 008956 207 --------REVRKIAADL-----------LVNPVQVNIGN----VD------------ELAANKAITQHI---------- 241 (547)
Q Consensus 207 --------~~~~~~~~~~-----------l~~~~~i~i~~----~~------------~~~~~~~i~~~~---------- 241 (547)
..++.+++-- +.+...+.+.. .. .......+.+.+
T Consensus 623 keVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 623 KEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 0111000000 00000000000 00 000000011000
Q ss_pred -EEcCccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHh-cccceEEEcCCCCHHHHHHHHHHhhcCCC---cE
Q 008956 242 -EVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRS---PV 315 (547)
Q Consensus 242 -~~~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~-~~~~~~~ihg~~~~~~R~~~l~~F~~g~~---~I 315 (547)
.++...-|.+.|..++.++ ..+++++.||...+..+.+.++|. +.+....+.|....++|...++.|..-.. .+
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 1122234556666666543 567899999999999999999998 45889999999999999999999986543 36
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCC
Q 008956 316 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 369 (547)
Q Consensus 316 LVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~ 369 (547)
|.+|.+.+.|+|+..++.||.||.-|++..+.|+.-|+.|.|+...+-++....
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 889999999999999999999999999999999999999999988777776543
No 142
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=2.3e-16 Score=160.00 Aligned_cols=330 Identities=12% Similarity=0.120 Sum_probs=217.1
Q ss_pred HHHHHHH-HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHH
Q 008956 28 ELLREVH-NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 106 (547)
Q Consensus 28 ~l~~~l~-~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~ 106 (547)
++...+. .+--.....+|.++++.+.+|+++++.-.|-+||.+++.+.+...+..... ...+++.|+.++++..
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-----s~~~~~~~~~~~~~~~ 347 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-----TNSLLPSEMVEHLRNG 347 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-----cceecchhHHHHhhcc
Confidence 3344443 334567789999999999999999999999999999998887776655332 3679999999998875
Q ss_pred HHHHHHhccC---CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcC----CCCeeEEEEecccccccC
Q 008956 107 QDEAVKFGKS---SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRIS----LNQVSYLVLDEADRMLDM 179 (547)
Q Consensus 107 ~~~~~~~~~~---~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~----l~~~~~lVlDEaH~ll~~ 179 (547)
...+.-.... ..-.++..+.+....+...-++.+.+++++.|+.....+...... +-...++++||+|..+-.
T Consensus 348 ~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 427 (1034)
T KOG4150|consen 348 SKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP 427 (1034)
T ss_pred CCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc
Confidence 4433221110 011122233333333333334457899999999887655433332 224567899999976543
Q ss_pred CcH----HHHHHHHHhCC-----CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCc----
Q 008956 180 GFE----PQIRKIVKEVP-----ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP---- 246 (547)
Q Consensus 180 g~~----~~i~~i~~~l~-----~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~---- 246 (547)
|. .+++.++..+. ...|++--+||+...++-+-.-+-.+...+...+.. +.. -...+.+..+
T Consensus 428 -~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS--Ps~--~K~~V~WNP~~~P~ 502 (1034)
T KOG4150|consen 428 -TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS--PSS--EKLFVLWNPSAPPT 502 (1034)
T ss_pred -hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC--CCc--cceEEEeCCCCCCc
Confidence 22 23334333322 356888888888766654433332233332221111 111 1111211111
Q ss_pred --cchHHHH---HHHHHh-cCCCCeEEEEcCChHHHHHHHHHHhccc---------ceEEEcCCCCHHHHHHHHHHhhcC
Q 008956 247 --MDKHRRL---EQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQF---------GAAAIHGDKSQSERDYVLNQFRAG 311 (547)
Q Consensus 247 --~~k~~~l---~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~~~---------~~~~ihg~~~~~~R~~~l~~F~~g 311 (547)
.++...+ ..++.+ ...+-++|.||.+++.|+.+....+.-+ .+..+.|+....+|..++.+.--|
T Consensus 503 ~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G 582 (1034)
T KOG4150|consen 503 SKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG 582 (1034)
T ss_pred chhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC
Confidence 1122222 222222 2345799999999999998876654321 356678999999999999999999
Q ss_pred CCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEec
Q 008956 312 RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFG 367 (547)
Q Consensus 312 ~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~ 367 (547)
+..-+|+|++++-||||-.++.|+..++|.|...+.|..||+||..++..++.+..
T Consensus 583 ~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 583 KLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred eeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 99999999999999999999999999999999999999999999998887766553
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.67 E-value=1.7e-16 Score=126.22 Aligned_cols=76 Identities=45% Similarity=0.743 Sum_probs=71.8
Q ss_pred HHhc-ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCC
Q 008956 282 NLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAG 357 (547)
Q Consensus 282 ~L~~-~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g 357 (547)
+|++ .+.+..+|+++++.+|+.+++.|+++...|||||+++++|||+|.+++||++++|+++.+|+|++||++|.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3443 388999999999999999999999999999999999999999999999999999999999999999999986
No 144
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=2.6e-15 Score=152.69 Aligned_cols=266 Identities=22% Similarity=0.269 Sum_probs=180.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHh
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 137 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~ 137 (547)
++-++||-||||.-++ ..+.. .+..++.-|.|-||.++++.+...+ +.|..++|....... ..
T Consensus 194 i~H~GPTNSGKTy~AL----qrl~~-------aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~-~~- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRAL----QRLKS-------AKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVL-DN- 256 (700)
T ss_pred EEEeCCCCCchhHHHH----HHHhh-------hccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecC-CC-
Confidence 4456999999997654 44444 3467999999999999999988865 445555554322111 11
Q ss_pred hCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHH-HhCCCCceEEEEeccCcHHHHHHHHHh
Q 008956 138 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIV-KEVPARRQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 138 ~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~-~~l~~~~q~l~~SAT~~~~~~~~~~~~ 216 (547)
...+..+-||-|+.. + -..+++.||||++.|.|......+.+.+ ....+..++.. .+.+.++++..
T Consensus 257 ~~~a~hvScTVEM~s-------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~~i 323 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMVS-------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVRKI 323 (700)
T ss_pred CCcccceEEEEEEee-------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHHHH
Confidence 123677778876552 1 2458899999999998876555544432 22222222222 23455555555
Q ss_pred cCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc--cceEEEcC
Q 008956 217 LVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ--FGAAAIHG 294 (547)
Q Consensus 217 l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~--~~~~~ihg 294 (547)
+...- .+.....++...+..-.+.+..-+....++.-++ |-+++.+..+...+.+. ..+++|+|
T Consensus 324 ~k~TG------------d~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV--~FSkk~I~~~k~kIE~~g~~k~aVIYG 389 (700)
T KOG0953|consen 324 LKMTG------------DDVEVREYERLSPLVVEETALGSLSNLKPGDCVV--AFSKKDIFTVKKKIEKAGNHKCAVIYG 389 (700)
T ss_pred HhhcC------------CeeEEEeecccCcceehhhhhhhhccCCCCCeEE--EeehhhHHHHHHHHHHhcCcceEEEec
Confidence 42110 0111222333333333345666677777776544 55788889999998865 56999999
Q ss_pred CCCHHHHHHHHHHhhc--CCCcEEEEccccccCCCCCCccEEEEcCCC---------CChhhhHhhhccccCCCC---ce
Q 008956 295 DKSQSERDYVLNQFRA--GRSPVLVATDVAARGLDIKDIRVVVNYDFP---------TGVEDYVHRIGRTGRAGA---TG 360 (547)
Q Consensus 295 ~~~~~~R~~~l~~F~~--g~~~ILVaT~~~~~GiDip~v~~VI~~d~p---------~s~~~yiQriGR~gR~g~---~g 360 (547)
+++++.|.+-...|++ ++++||||||++++|+|+ +++.||++++. ....+..|..|||||.|. .|
T Consensus 390 sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G 468 (700)
T KOG0953|consen 390 SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQG 468 (700)
T ss_pred CCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCc
Confidence 9999999999999987 899999999999999999 89999998875 356788999999999873 57
Q ss_pred EEEEEecC
Q 008956 361 VAYTFFGD 368 (547)
Q Consensus 361 ~~~~l~~~ 368 (547)
.+.+|..+
T Consensus 469 ~vTtl~~e 476 (700)
T KOG0953|consen 469 EVTTLHSE 476 (700)
T ss_pred eEEEeeHh
Confidence 77777643
No 145
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.65 E-value=1e-14 Score=158.03 Aligned_cols=118 Identities=19% Similarity=0.295 Sum_probs=97.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCC--CcEEEEccccccCCCCCCccEEEEc
Q 008956 261 EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR--SPVLVATDVAARGLDIKDIRVVVNY 337 (547)
Q Consensus 261 ~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~--~~ILVaT~~~~~GiDip~v~~VI~~ 337 (547)
..+.++|||+...++.+.|..+|.-+ +....+.|....++|+..++.|+... ..++++|...+.|||+.+++.||+|
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFY 1353 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFY 1353 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEe
Confidence 34579999999999999999999865 77889999999999999999998654 3467799999999999999999999
Q ss_pred CCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHH
Q 008956 338 DFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 378 (547)
Q Consensus 338 d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~ 378 (547)
|..||+..-.|.--|+.|.|+...+.++-.-.+..+.+.|+
T Consensus 1354 DsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniL 1394 (1958)
T KOG0391|consen 1354 DSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENIL 1394 (1958)
T ss_pred cCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHH
Confidence 99999999999999999998766554443333344444443
No 146
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.65 E-value=6.5e-15 Score=152.84 Aligned_cols=122 Identities=20% Similarity=0.323 Sum_probs=104.8
Q ss_pred cchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhc-ccceEEEcCCCCHHHHHHHHHHhhcCCCc-EEEEccccc
Q 008956 247 MDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSP-VLVATDVAA 323 (547)
Q Consensus 247 ~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~-~~~~~~ihg~~~~~~R~~~l~~F~~g~~~-ILVaT~~~~ 323 (547)
..|...|.++|.++ ..+.++|+|+...++++.+.++|.. .+....+.|.....+|..++.+|...++- +|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 34556677777654 5678999999999999999999984 58999999999999999999999975544 588999999
Q ss_pred cCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCce--EEEEEecC
Q 008956 324 RGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATG--VAYTFFGD 368 (547)
Q Consensus 324 ~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g--~~~~l~~~ 368 (547)
-|||+..++.||+||..|+|.--.|...|+.|.|+.. ++|.++..
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 9999999999999999999999999999999999865 45555544
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=6e-14 Score=152.62 Aligned_cols=127 Identities=24% Similarity=0.235 Sum_probs=96.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.|+++|.. -.+.-++.-|+.+.||-|||+++.+|++..... |+.|-||+++..||..=++++..+....++
T Consensus 85 r~ydVQli--Ggl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~-------GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 85 RHFDVQLI--GGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT-------GKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred CcchhHHH--hhhhhcCCceeeecCCCChhHHHHHHHHHHhhc-------CCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 45555544 444445667999999999999999998876665 778999999999999999999999999999
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcC------CcCCCCeeEEEEecccccc
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRML 177 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEaH~ll 177 (547)
.|.++..+.+.. .++..-.|+|+.+|...| .|+|... ......+.+.||||+|.+|
T Consensus 156 tvg~i~~~~~~~--err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSPE--ERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCChH--HHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999987655433 333445699999999877 2333321 2234668899999999766
No 148
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.62 E-value=2.7e-13 Score=150.57 Aligned_cols=116 Identities=22% Similarity=0.390 Sum_probs=83.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHhcccc-eEEEcCCCCHHHHHHHHHHhh----cCCCcEEEEccccccCCCCCC--ccEEE
Q 008956 263 GSKIIVFCSTKKMCDQLARNLTRQFG-AAAIHGDKSQSERDYVLNQFR----AGRSPVLVATDVAARGLDIKD--IRVVV 335 (547)
Q Consensus 263 ~~k~IVF~~s~~~~~~l~~~L~~~~~-~~~ihg~~~~~~R~~~l~~F~----~g~~~ILVaT~~~~~GiDip~--v~~VI 335 (547)
...+|||+++.+.++.+++.|..... ...+++. ..+..+++.|+ .++..||++|..+++|||+|+ +++||
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEE
Confidence 34589999999999999999875422 2334553 24677887776 467789999999999999996 68899
Q ss_pred EcCCCCC-hh-----------------------------hhHhhhccccCCCCceEEEEEecCC--ChHHHHHHHHHH
Q 008956 336 NYDFPTG-VE-----------------------------DYVHRIGRTGRAGATGVAYTFFGDQ--DSRYASDLIKLL 381 (547)
Q Consensus 336 ~~d~p~s-~~-----------------------------~yiQriGR~gR~g~~g~~~~l~~~~--~~~~~~~l~~~l 381 (547)
...+|.. +. .+.|.+||.-|...+.-++++++.. ...+-+.+++.|
T Consensus 611 I~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 611 ITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhC
Confidence 9888752 21 3458899999987766666677653 334444554443
No 149
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.62 E-value=2.5e-14 Score=148.93 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=96.1
Q ss_pred cchHHHHHHHHHhc--CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhc--CCCcE-EEEcc
Q 008956 247 MDKHRRLEQILRSQ--EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA--GRSPV-LVATD 320 (547)
Q Consensus 247 ~~k~~~l~~~l~~~--~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~--g~~~I-LVaT~ 320 (547)
.-|...+++.++.. ....+++|..........+...|++. +....+||.....+|+.+++.|.. +..+| |++-.
T Consensus 728 S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLt 807 (901)
T KOG4439|consen 728 SCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLT 807 (901)
T ss_pred hhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEc
Confidence 33444444444432 44568888888888888888888865 778899999999999999999973 44555 45558
Q ss_pred ccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEe
Q 008956 321 VAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFF 366 (547)
Q Consensus 321 ~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~ 366 (547)
+.+.|||+-..+|+|.+|+-|++.--.|+..|+.|.|++..+++.-
T Consensus 808 AGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR 853 (901)
T KOG4439|consen 808 AGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHR 853 (901)
T ss_pred cCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEE
Confidence 8899999999999999999999999999999999999887665543
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.60 E-value=3.9e-13 Score=149.97 Aligned_cols=117 Identities=20% Similarity=0.314 Sum_probs=84.8
Q ss_pred CeEEEEcCChHHHHHHHHHHhcccc--eEEEcCCCCHHHHHHHHHHhhcCCC-cEEEEccccccCCCCCC--ccEEEEcC
Q 008956 264 SKIIVFCSTKKMCDQLARNLTRQFG--AAAIHGDKSQSERDYVLNQFRAGRS-PVLVATDVAARGLDIKD--IRVVVNYD 338 (547)
Q Consensus 264 ~k~IVF~~s~~~~~~l~~~L~~~~~--~~~ihg~~~~~~R~~~l~~F~~g~~-~ILVaT~~~~~GiDip~--v~~VI~~d 338 (547)
.++|||+++.+.++.+++.+..... ....++..+ +..+++.|+...- .+||+|..+++|||+|+ +..||...
T Consensus 480 ~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~ 556 (654)
T COG1199 480 GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVG 556 (654)
T ss_pred CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEe
Confidence 4899999999999999999986543 334444443 4478888876554 89999999999999996 47788888
Q ss_pred CCCC-h-----------------------------hhhHhhhccccCCCCceEEEEEecCCCh--HHHHHHHHHHHH
Q 008956 339 FPTG-V-----------------------------EDYVHRIGRTGRAGATGVAYTFFGDQDS--RYASDLIKLLEG 383 (547)
Q Consensus 339 ~p~s-~-----------------------------~~yiQriGR~gR~g~~g~~~~l~~~~~~--~~~~~l~~~l~~ 383 (547)
+|.- + ..+.|.+||+-|.-.+.-++++++..-. .+-..+.+.+..
T Consensus 557 lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~ 633 (654)
T COG1199 557 LPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPP 633 (654)
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCC
Confidence 8752 2 2557999999998766666667765322 244445554443
No 151
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.59 E-value=3.1e-13 Score=135.65 Aligned_cols=120 Identities=22% Similarity=0.258 Sum_probs=97.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcC-CCcE-EEEccccccCCCCCCccEEEEc
Q 008956 261 EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAG-RSPV-LVATDVAARGLDIKDIRVVVNY 337 (547)
Q Consensus 261 ~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g-~~~I-LVaT~~~~~GiDip~v~~VI~~ 337 (547)
...-|.|||.......+.+.-.|.+. +.|..+.|.|+...|+..++.|++. +|+| ||+-.+.+.-+|+..+.+|+..
T Consensus 636 d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002|consen 636 DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEee
Confidence 33458899999999999999888865 8999999999999999999999864 4665 5566888999999999999999
Q ss_pred CCCCChhhhHhhhccccCCCCce--EEEEEecCCChHHHHHHHHHHH
Q 008956 338 DFPTGVEDYVHRIGRTGRAGATG--VAYTFFGDQDSRYASDLIKLLE 382 (547)
Q Consensus 338 d~p~s~~~yiQriGR~gR~g~~g--~~~~l~~~~~~~~~~~l~~~l~ 382 (547)
|+-|++.--.|...|..|.|+.. .++.|+-+ ......|+++-+
T Consensus 716 DPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE--nsiE~kIieLQe 760 (791)
T KOG1002|consen 716 DPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE--NSIEEKIIELQE 760 (791)
T ss_pred cccccHHHHhhhhhhHHhhcCccceeEEEeehh--ccHHHHHHHHHH
Confidence 99999999999999999999754 45555533 334445555443
No 152
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.59 E-value=4.3e-14 Score=154.91 Aligned_cols=313 Identities=19% Similarity=0.255 Sum_probs=206.9
Q ss_pred CCCCcHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hcc
Q 008956 38 FSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK-FGK 115 (547)
Q Consensus 38 ~~~~~~~Q~~~i~~il~g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~-~~~ 115 (547)
|....|+|.++++.+.+. +++++.+|+|||||.++-++++. +....++++++|.-+.+..++..|.+ +..
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~ 1212 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--------PDTIGRAVYIAPLEEIADEQYRDWEKKFSK 1212 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--------CccceEEEEecchHHHHHHHHHHHHHhhcc
Confidence 445589999999998875 56888899999999988776554 22345899999999999988877654 555
Q ss_pred CCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC---c--HHHHHHHHH
Q 008956 116 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG---F--EPQIRKIVK 190 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g---~--~~~i~~i~~ 190 (547)
..+..++.+.|....+.. +....+|+|+||+++..+ . ..+.+++.|.||+|.+.+.. + .-.++.|..
T Consensus 1213 ~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1213 LLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIAS 1284 (1674)
T ss_pred ccCceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHH
Confidence 577888888776654433 233468999999999654 2 56789999999999765321 0 012667777
Q ss_pred hCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHH--------HHHHHHHhcCC
Q 008956 191 EVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR--------RLEQILRSQEP 262 (547)
Q Consensus 191 ~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~--------~l~~~l~~~~~ 262 (547)
++-++.+++.+|..+.. ..++ ........+++..... .....-++..+....... .+..+.+....
T Consensus 1285 q~~k~ir~v~ls~~lan-a~d~--ig~s~~~v~Nf~p~~R---~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~ 1358 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLAN-ARDL--IGASSSGVFNFSPSVR---PVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGN 1358 (1674)
T ss_pred HHHhheeEEEeehhhcc-chhh--ccccccceeecCcccC---CCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcC
Confidence 77778888888887653 2222 1111222233322221 111222222222221111 12333334456
Q ss_pred CCeEEEEcCChHHHHHHHHHHh-----------------------cccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEc
Q 008956 263 GSKIIVFCSTKKMCDQLARNLT-----------------------RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT 319 (547)
Q Consensus 263 ~~k~IVF~~s~~~~~~l~~~L~-----------------------~~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT 319 (547)
.++++||+++.++|..++..|- +.++..+-|.+++..+...+-+.|..|.+.|+|..
T Consensus 1359 ~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s 1438 (1674)
T KOG0951|consen 1359 RKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMS 1438 (1674)
T ss_pred CCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEE
Confidence 6899999999999988776541 12344444889999999999999999999999987
Q ss_pred cccccCCCCCCccEEEE-----cC------CCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHH
Q 008956 320 DVAARGLDIKDIRVVVN-----YD------FPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDL 377 (547)
Q Consensus 320 ~~~~~GiDip~v~~VI~-----~d------~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l 377 (547)
.- -.|+-... +.||. || .+..+.+..|+.|++.|+ +.|+++.......+++++
T Consensus 1439 ~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1439 RD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred cc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHh
Confidence 55 55555433 33332 22 233588999999999995 568888877766665554
No 153
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=1.6e-13 Score=158.38 Aligned_cols=335 Identities=18% Similarity=0.227 Sum_probs=209.9
Q ss_pred CCCCcHHHHHHHHHHhC-----CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 008956 38 FSSPTPIQAQSWPIALQ-----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 112 (547)
Q Consensus 38 ~~~~~~~Q~~~i~~il~-----g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~ 112 (547)
+..+++||.+.++++.. +.+.++..++|.|||+..+..+...+.... ...+++||+||+ +++.+|.+++.+
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~---~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIK---VYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhccc---CCCCCeEEEecH-HHHHHHHHHHhh
Confidence 45788999999988662 567888899999999876655444222211 113589999997 788999999988
Q ss_pred hccCCceEEEEecCCCCC----hhhHHHhhCC-----CcEEEECcHHHHHHH-hcCCcCCCCeeEEEEecccccccCCcH
Q 008956 113 FGKSSRISCTCLYGGAPK----GPQLKDIDRG-----VDIVVATPGRLNDIL-EMRRISLNQVSYLVLDEADRMLDMGFE 182 (547)
Q Consensus 113 ~~~~~~i~~~~~~g~~~~----~~~~~~~~~~-----~~IlV~Tp~~L~~~l-~~~~~~l~~~~~lVlDEaH~ll~~g~~ 182 (547)
+...... +...+|.... .+.+..+... .+++++|++.|...+ ....+.-..+.++|+||+|++.+.. .
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s 489 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-S 489 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-h
Confidence 8866443 5555665542 3444444432 799999999998742 1223445678999999999866532 1
Q ss_pred HHHHHHHHhCCCCceEEEEeccCc-HHHH--------------------------------------------------H
Q 008956 183 PQIRKIVKEVPARRQTLMYTATWP-REVR--------------------------------------------------K 211 (547)
Q Consensus 183 ~~i~~i~~~l~~~~q~l~~SAT~~-~~~~--------------------------------------------------~ 211 (547)
.....+. .+....+ +++|.||- ..+. .
T Consensus 490 ~~~~~l~-~~~~~~~-~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 490 SEGKALQ-FLKALNR-LDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred HHHHHHH-HHhhcce-eeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 1111111 1111111 33333320 0000 0
Q ss_pred HHHHhcCCCeEEE--e----C------------c----------------cc---cc-cc--------------------
Q 008956 212 IAADLLVNPVQVN--I----G------------N----------------VD---EL-AA-------------------- 233 (547)
Q Consensus 212 ~~~~~l~~~~~i~--i----~------------~----------------~~---~~-~~-------------------- 233 (547)
++..++..-.... + . . .. .. ..
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 0000000000000 0 0 0 00 00 00
Q ss_pred ccceeEEEEEcC-----------------------------cc-chHHHHHHHH-H-hcCCCC--eEEEEcCChHHHHHH
Q 008956 234 NKAITQHIEVLA-----------------------------PM-DKHRRLEQIL-R-SQEPGS--KIIVFCSTKKMCDQL 279 (547)
Q Consensus 234 ~~~i~~~~~~~~-----------------------------~~-~k~~~l~~~l-~-~~~~~~--k~IVF~~s~~~~~~l 279 (547)
-..+..+-.... .. .|...+.+++ . ....+. ++|||++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 000000000000 01 4566666666 2 344556 999999999999999
Q ss_pred HHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcC--CCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCC
Q 008956 280 ARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAG--RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA 356 (547)
Q Consensus 280 ~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g--~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~ 356 (547)
...|+.. +....++|.++...|..+++.|.++ ..-+|+++.+.+.|+|+..+++||++|..|++....|++.|+.|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 9999877 5899999999999999999999985 445677889999999999999999999999999999999999999
Q ss_pred CCceEEEEEecCCChHHHHHHHHH
Q 008956 357 GATGVAYTFFGDQDSRYASDLIKL 380 (547)
Q Consensus 357 g~~g~~~~l~~~~~~~~~~~l~~~ 380 (547)
|++..+.++-........+.+...
T Consensus 808 gQ~~~v~v~r~i~~~tiEe~i~~~ 831 (866)
T COG0553 808 GQKRPVKVYRLITRGTIEEKILEL 831 (866)
T ss_pred cCcceeEEEEeecCCcHHHHHHHH
Confidence 987766555443333433444333
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=2.3e-12 Score=144.23 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=60.7
Q ss_pred CCCCCcHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 008956 37 GFSSPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 112 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il----~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~ 112 (547)
.|..++|.|.+.+..+. .++++++.+|||+|||++.|.|++.+..... ..+++++++.|..=..|..+++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP----EVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----ccccEEEEcccchHHHHHHHHHHh
Confidence 46677999999987654 4788999999999999999999998876421 135899999999999999999988
Q ss_pred h
Q 008956 113 F 113 (547)
Q Consensus 113 ~ 113 (547)
.
T Consensus 83 ~ 83 (705)
T TIGR00604 83 L 83 (705)
T ss_pred h
Confidence 4
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.51 E-value=6e-14 Score=112.06 Aligned_cols=80 Identities=48% Similarity=0.785 Sum_probs=73.7
Q ss_pred HHHHHHhc-ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCC
Q 008956 278 QLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA 356 (547)
Q Consensus 278 ~l~~~L~~-~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~ 356 (547)
.+++.|+. .+.+..+|++++..+|..+++.|+++...|||+|+++++|+|+|++++||++++|++..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 35556654 37899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 008956 357 G 357 (547)
Q Consensus 357 g 357 (547)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 156
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.51 E-value=1.1e-11 Score=127.78 Aligned_cols=289 Identities=20% Similarity=0.259 Sum_probs=196.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCC-ceE----EEEecC--------------CCCChhhHHHh-------------
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSS-RIS----CTCLYG--------------GAPKGPQLKDI------------- 137 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~-~i~----~~~~~g--------------~~~~~~~~~~~------------- 137 (547)
.|+||||+|+|..|.++.+.+.++.... .+. -..-+| ...+.+.+..+
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 5899999999999999998887765441 100 000011 01111122211
Q ss_pred ------------hCCCcEEEECcHHHHHHHhc------CCcCCCCeeEEEEecccccccCCc--HHHHHHHHHhCCC---
Q 008956 138 ------------DRGVDIVVATPGRLNDILEM------RRISLNQVSYLVLDEADRMLDMGF--EPQIRKIVKEVPA--- 194 (547)
Q Consensus 138 ------------~~~~~IlV~Tp~~L~~~l~~------~~~~l~~~~~lVlDEaH~ll~~g~--~~~i~~i~~~l~~--- 194 (547)
-..+|||||+|=-|...+.. ..--|+.+.++|+|.||.|+-..| ...+.+.++..|.
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~ 196 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSH 196 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCC
Confidence 12478999999999877763 122377899999999997764332 2333344444443
Q ss_pred ------------------CceEEEEeccCcHHHHHHHHHhcCCC-eEEEeCcccc-----cccccceeEEEEEcCccc--
Q 008956 195 ------------------RRQTLMYTATWPREVRKIAADLLVNP-VQVNIGNVDE-----LAANKAITQHIEVLAPMD-- 248 (547)
Q Consensus 195 ------------------~~q~l~~SAT~~~~~~~~~~~~l~~~-~~i~i~~~~~-----~~~~~~i~~~~~~~~~~~-- 248 (547)
-+|+|++|+...+++..++.....+. -.+.+..... ......+.|.+...+...
T Consensus 197 ~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~ 276 (442)
T PF06862_consen 197 DTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPA 276 (442)
T ss_pred CCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcc
Confidence 26999999999999999998865543 2222222221 122334556555433221
Q ss_pred -----hHHHH-HHHHHh---cCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEE
Q 008956 249 -----KHRRL-EQILRS---QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVA 318 (547)
Q Consensus 249 -----k~~~l-~~~l~~---~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVa 318 (547)
..+.. ..++.. ......+|||+++--+--.+-.+|++. +....+|.-.++.+..++-..|..|+.+||+.
T Consensus 277 ~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~ 356 (442)
T PF06862_consen 277 DDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLY 356 (442)
T ss_pred hhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEE
Confidence 11111 112221 234568999999999999999999865 88899999999999999999999999999999
Q ss_pred cc--ccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCC------ceEEEEEecCCChHHHHHHH
Q 008956 319 TD--VAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGA------TGVAYTFFGDQDSRYASDLI 378 (547)
Q Consensus 319 T~--~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~------~g~~~~l~~~~~~~~~~~l~ 378 (547)
|. -.-+=..|.++.+||+|.+|..+.-|...+.-...... ...|.++|+.-|.-.++.|+
T Consensus 357 TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 357 TERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred EhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 94 45677889999999999999999888777755544432 57899999988887666654
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.50 E-value=8e-13 Score=144.46 Aligned_cols=139 Identities=13% Similarity=0.105 Sum_probs=95.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCCh---hhHH
Q 008956 59 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKG---PQLK 135 (547)
Q Consensus 59 lv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~---~~~~ 135 (547)
+..+-+|||||.+|+-.+-..+.. ++.+|||+|...|..|+.+.++..+.. ..+..++++.... ..|.
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~-------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA-------GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc-------CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHH
Confidence 333446999999998777666665 779999999999999999999988852 2345566555443 3445
Q ss_pred HhhCC-CcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC-----c-HHHHHHHHHhCCCCceEEEEeccCcHH
Q 008956 136 DIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-----F-EPQIRKIVKEVPARRQTLMYTATWPRE 208 (547)
Q Consensus 136 ~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g-----~-~~~i~~i~~~l~~~~q~l~~SAT~~~~ 208 (547)
.+..+ ..|+|+|-..+ ...+.++.+|||||-|.-.-.. | ..++.. +.....+..+|+-|||+.-+
T Consensus 235 ~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~-~Ra~~~~~~lvLgSaTPSle 306 (665)
T PRK14873 235 AVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVAL-LRAHQHGCALLIGGHARTAE 306 (665)
T ss_pred HHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHH-HHHHHcCCcEEEECCCCCHH
Confidence 55555 89999996655 3557889999999999533111 1 122222 22333467799999999877
Q ss_pred HHHHHH
Q 008956 209 VRKIAA 214 (547)
Q Consensus 209 ~~~~~~ 214 (547)
....+.
T Consensus 307 s~~~~~ 312 (665)
T PRK14873 307 AQALVE 312 (665)
T ss_pred HHHHHh
Confidence 655443
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.49 E-value=2.4e-12 Score=142.29 Aligned_cols=311 Identities=21% Similarity=0.192 Sum_probs=175.1
Q ss_pred CCCcHHHHHHHHHHhC----C--C--cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 39 SSPTPIQAQSWPIALQ----S--R--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~----g--~--~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
..-+.||..|+..+.+ . . -++-.|.||+|||++=. -|+..+. +...+.++.|..-.|.|-.|+-+.+
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLs----d~~~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALR----DDKQGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhC----CCCCCceEEEEccccceeccchHHH
Confidence 3557899999988764 1 1 24446999999997532 2222222 2334567777777788888877776
Q ss_pred HHhccCCceEEEEecCCCCCh-------------------------------------------hhHHHhh--------C
Q 008956 111 VKFGKSSRISCTCLYGGAPKG-------------------------------------------PQLKDID--------R 139 (547)
Q Consensus 111 ~~~~~~~~i~~~~~~g~~~~~-------------------------------------------~~~~~~~--------~ 139 (547)
++-.....-..++++|+.... .....+. -
T Consensus 482 r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 482 KTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred HHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 654433333333333321111 0000111 1
Q ss_pred CCcEEEECcHHHHHHHh--cC-CcCCC----CeeEEEEecccccccCCcHHHHHHHHHhCC-CCceEEEEeccCcHHHHH
Q 008956 140 GVDIVVATPGRLNDILE--MR-RISLN----QVSYLVLDEADRMLDMGFEPQIRKIVKEVP-ARRQTLMYTATWPREVRK 211 (547)
Q Consensus 140 ~~~IlV~Tp~~L~~~l~--~~-~~~l~----~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~-~~~q~l~~SAT~~~~~~~ 211 (547)
...|+|+|++.++.... +. ...+. .-+.|||||+|-+-.. ....+..++..+. -...++++|||+|+.+..
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 26799999999987653 21 11111 1367999999964322 2233444444322 256799999999987664
Q ss_pred HHHH-h----------cC---CCeEEEeCcccccccc----------------------------ccee-EEEEEcCcc-
Q 008956 212 IAAD-L----------LV---NPVQVNIGNVDELAAN----------------------------KAIT-QHIEVLAPM- 247 (547)
Q Consensus 212 ~~~~-~----------l~---~~~~i~i~~~~~~~~~----------------------------~~i~-~~~~~~~~~- 247 (547)
.+.. | .. .+..+...-.++.... .... -.+..+...
T Consensus 641 ~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~ 720 (1110)
T TIGR02562 641 TLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLP 720 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcc
Confidence 3322 2 11 1222222222221100 0000 001111111
Q ss_pred ----chHHHHHHHHH--------hc----C-CCCe---EEEEcCChHHHHHHHHHHhcc-------cceEEEcCCCCHHH
Q 008956 248 ----DKHRRLEQILR--------SQ----E-PGSK---IIVFCSTKKMCDQLARNLTRQ-------FGAAAIHGDKSQSE 300 (547)
Q Consensus 248 ----~k~~~l~~~l~--------~~----~-~~~k---~IVF~~s~~~~~~l~~~L~~~-------~~~~~ihg~~~~~~ 300 (547)
.....+.+.+. .. . .+++ .+|-++++..+-.++..|... +.+.++|+......
T Consensus 721 ~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~ 800 (1110)
T TIGR02562 721 RENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLL 800 (1110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHH
Confidence 11111111111 00 1 2233 367788888888888877643 34788999998888
Q ss_pred HHHHHHHh----------------------hc----CCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhcccc
Q 008956 301 RDYVLNQF----------------------RA----GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTG 354 (547)
Q Consensus 301 R~~~l~~F----------------------~~----g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~g 354 (547)
|..+++.. ++ +...|+|+|++++.|+|+ +.+++|- -|.+....+|++||+.
T Consensus 801 Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~ 877 (1110)
T TIGR02562 801 RSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVN 877 (1110)
T ss_pred HHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccc
Confidence 77766553 11 356799999999999999 5565553 3556899999999999
Q ss_pred CCCC
Q 008956 355 RAGA 358 (547)
Q Consensus 355 R~g~ 358 (547)
|.+.
T Consensus 878 R~~~ 881 (1110)
T TIGR02562 878 RHRL 881 (1110)
T ss_pred cccc
Confidence 9864
No 159
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.47 E-value=2.7e-12 Score=137.29 Aligned_cols=115 Identities=22% Similarity=0.242 Sum_probs=96.0
Q ss_pred HHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcc-----------------------cceEEEcCCCCHHHHHHHHHH
Q 008956 252 RLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ-----------------------FGAAAIHGDKSQSERDYVLNQ 307 (547)
Q Consensus 252 ~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~-----------------------~~~~~ihg~~~~~~R~~~l~~ 307 (547)
.|+++|+.. ..+.++|||..+....+.+..+|... .....|.|..+..+|+.....
T Consensus 1130 LLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~ 1209 (1567)
T KOG1015|consen 1130 LLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEE 1209 (1567)
T ss_pred hHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHH
Confidence 455555433 45679999999999999999988530 136778999999999999999
Q ss_pred hhcC-C---CcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEe
Q 008956 308 FRAG-R---SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFF 366 (547)
Q Consensus 308 F~~g-~---~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~ 366 (547)
|++- + ...||+|.+.+-|||+-.++.||+||..|+|.--+|.|=|+.|.|+...||++-
T Consensus 1210 FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1210 FNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred hcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 9853 2 237999999999999999999999999999999999999999999887777654
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.46 E-value=7.8e-12 Score=135.09 Aligned_cols=286 Identities=19% Similarity=0.210 Sum_probs=180.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHh
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 137 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~ 137 (547)
.+|.+|+|||||.+.+-++-..+.. ...++|+|+..++|+.++...++..... ++.. |.+.... .+
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~---Y~d~~~~----~i 117 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVN---YLDSDDY----II 117 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-ccee---eeccccc----cc
Confidence 5667999999997654433222211 2459999999999999999998776432 1111 1111100 01
Q ss_pred h-CCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHH-------HHHHhCCCCceEEEEeccCcHHH
Q 008956 138 D-RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIR-------KIVKEVPARRQTLMYTATWPREV 209 (547)
Q Consensus 138 ~-~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~-------~i~~~l~~~~q~l~~SAT~~~~~ 209 (547)
. +..+-++++.++|.++.. -.+.++++|||||+-.++..-|.+.++ .+...+.....+|++-|++....
T Consensus 118 ~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 118 DGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred cccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 1 235788888888866532 245679999999999877653433332 23344566788999999999999
Q ss_pred HHHHHHhcCCCeEEEeCcccccccccceeEEEE-----------------------------------EcCccchHHHHH
Q 008956 210 RKIAADLLVNPVQVNIGNVDELAANKAITQHIE-----------------------------------VLAPMDKHRRLE 254 (547)
Q Consensus 210 ~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~-----------------------------------~~~~~~k~~~l~ 254 (547)
.+++..+..+.....+.+... .......+-+. .....+......
T Consensus 195 vdFl~~~Rp~~~i~vI~n~y~-~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVNTYA-SPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHhCCCCcEEEEEeeee-cCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 999988765433322221110 00000000000 000122334556
Q ss_pred HHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCc--
Q 008956 255 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI-- 331 (547)
Q Consensus 255 ~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v-- 331 (547)
.++.....++++-||++|+..++.+++..... ..+..+++.-+..+ + +. -++++|+|=|+++..|+++-..
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhc
Confidence 66666778889999999999999999888754 45666766555442 2 22 3578999999999999999654
Q ss_pred cEEEEcCCCC----ChhhhHhhhccccCCCCceEEEEEecC
Q 008956 332 RVVVNYDFPT----GVEDYVHRIGRTGRAGATGVAYTFFGD 368 (547)
Q Consensus 332 ~~VI~~d~p~----s~~~yiQriGR~gR~g~~g~~~~l~~~ 368 (547)
+-|+-|=-|. +..+..|++||+-... ....+++++.
T Consensus 348 ~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 348 DSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 3344443332 4556899999997764 4556666653
No 161
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=3.1e-12 Score=140.82 Aligned_cols=124 Identities=23% Similarity=0.320 Sum_probs=97.0
Q ss_pred CccchHHHHHHHHH-hcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCC-CcEEEEccc
Q 008956 245 APMDKHRRLEQILR-SQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR-SPVLVATDV 321 (547)
Q Consensus 245 ~~~~k~~~l~~~l~-~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~-~~ILVaT~~ 321 (547)
...+|...+.+.+. ....+.++||-|.|++..+.|++.|++. ++..++++.....+-+.+.+ .|. -.|-|||++
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNM 685 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNM 685 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccC
Confidence 34456655555444 4577899999999999999999999865 77777877766555444443 343 348999999
Q ss_pred cccCCCCC--------CccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 322 AARGLDIK--------DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 322 ~~~GiDip--------~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
++||.||. +=-|||-...+.|..---|..||+||.|.+|.+-.|++-.|.
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99999997 224899999999999999999999999999999888876543
No 162
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.38 E-value=8.9e-11 Score=125.54 Aligned_cols=304 Identities=16% Similarity=0.212 Sum_probs=171.2
Q ss_pred HHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh-----ccCCceE
Q 008956 46 AQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF-----GKSSRIS 120 (547)
Q Consensus 46 ~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~-----~~~~~i~ 120 (547)
.+++..+..++-+++...||+|||..+.--++..+...... .-.-+.+.-|++..+.-+++.+.+- +...+..
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g--~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~ 461 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG--ASFNAVVSQPRRISAISLAERVANERGEEVGETCGYN 461 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc--ccccceeccccccchHHHHHHHHHhhHHhhccccccc
Confidence 34444555566778889999999998887777776653221 1224677778876666666654332 2211111
Q ss_pred EEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC-cHHHHHH------------
Q 008956 121 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQIRK------------ 187 (547)
Q Consensus 121 ~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g-~~~~i~~------------ 187 (547)
+... +..+ ...--|++||-+-|+..++.. +..+.++|+||.|..--.+ |...+..
T Consensus 462 vRf~-Sa~p--------rpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~ 529 (1282)
T KOG0921|consen 462 VRFD-SATP--------RPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVV 529 (1282)
T ss_pred cccc-cccc--------ccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhh
Confidence 1100 0000 011359999999998877654 3456789999999532211 2111111
Q ss_pred ----------HHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCccc---------cccc-ccceeEEEEEcC-c
Q 008956 188 ----------IVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVD---------ELAA-NKAITQHIEVLA-P 246 (547)
Q Consensus 188 ----------i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~---------~~~~-~~~i~~~~~~~~-~ 246 (547)
+...+..-.++.++++|+|-.. ++...+..+....-.... +... .+.-........ +
T Consensus 530 lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~--F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd 607 (1282)
T KOG0921|consen 530 LMSATIDTDLFTNFFSSIPDVTVHGRTFPVQS--FFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDP 607 (1282)
T ss_pred hhhcccchhhhhhhhccccceeeccccccHHH--HHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccCh
Confidence 1112222345556666655322 222211111110000000 0000 000000000000 0
Q ss_pred -------------c------chHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhc--------ccceEEEcCCCCHH
Q 008956 247 -------------M------DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR--------QFGAAAIHGDKSQS 299 (547)
Q Consensus 247 -------------~------~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~--------~~~~~~ihg~~~~~ 299 (547)
. ...+.+...+....-.+-++||.+-...+-.|...|.. ++++...|+.....
T Consensus 608 ~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~ 687 (1282)
T KOG0921|consen 608 SYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQ 687 (1282)
T ss_pred hhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccH
Confidence 0 01122222222333446789999999988888887753 25678889998888
Q ss_pred HHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCC------------------CChhhhHhhhccccCCCCceE
Q 008956 300 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFP------------------TGVEDYVHRIGRTGRAGATGV 361 (547)
Q Consensus 300 ~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p------------------~s~~~yiQriGR~gR~g~~g~ 361 (547)
+..++.+....+..+|+++|.++..-+.+-++..||+.+.- .+....+||.||++|. .+|.
T Consensus 688 eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~ 766 (1282)
T KOG0921|consen 688 EQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGF 766 (1282)
T ss_pred hhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccc
Confidence 88888888888999999999999999999887777754421 2556788999999998 5566
Q ss_pred EEEEe
Q 008956 362 AYTFF 366 (547)
Q Consensus 362 ~~~l~ 366 (547)
|..+.
T Consensus 767 ~f~lc 771 (1282)
T KOG0921|consen 767 CFHLC 771 (1282)
T ss_pred ccccc
Confidence 66654
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.37 E-value=3.6e-12 Score=128.24 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=94.1
Q ss_pred HHHHHHHHHh-------------CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 44 IQAQSWPIAL-------------QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 44 ~Q~~~i~~il-------------~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
||.+++..++ ..+.+|++.++|+|||+.++..+.. +...... .....+|||||. .+..||..++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~-l~~~~~~-~~~~~~LIv~P~-~l~~~W~~E~ 77 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISY-LKNEFPQ-RGEKKTLIVVPS-SLLSQWKEEI 77 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHH-HHHCCTT-SS-S-EEEEE-T-TTHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhh-hhhcccc-ccccceeEeecc-chhhhhhhhh
Confidence 6888887763 3357899999999999877655443 2221111 111259999999 8889999999
Q ss_pred HHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHh---cCCcCCCCeeEEEEecccccccCCcHHHHHH
Q 008956 111 VKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE---MRRISLNQVSYLVLDEADRMLDMGFEPQIRK 187 (547)
Q Consensus 111 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~---~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~ 187 (547)
.++.....+++....+...............+++|+|++.+..... ...+...++++||+||+|.+.+.. .....
T Consensus 78 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~~ 155 (299)
T PF00176_consen 78 EKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRYK 155 (299)
T ss_dssp HHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHHH
T ss_pred ccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--ccccc
Confidence 9999654566666665551222222333458999999999981100 011112358999999999986543 23333
Q ss_pred HHHhCCCCceEEEEeccCc
Q 008956 188 IVKEVPARRQTLMYTATWP 206 (547)
Q Consensus 188 i~~~l~~~~q~l~~SAT~~ 206 (547)
.+..+. ....+++||||.
T Consensus 156 ~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 156 ALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HHHCCC-ECEEEEE-SS-S
T ss_pred cccccc-cceEEeeccccc
Confidence 444455 566788999964
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.35 E-value=1.2e-10 Score=132.91 Aligned_cols=295 Identities=20% Similarity=0.235 Sum_probs=165.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 135 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 135 (547)
+.-+|+.-+|||||++.+..+-..+.. ...++++||+-++.|-.|+.+++..+........ .......++
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccCHHHHH
Confidence 458999999999999765544333322 2367999999999999999999999876543322 223333443
Q ss_pred H-hhCC-CcEEEECcHHHHHHHhcCC--cCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHH
Q 008956 136 D-IDRG-VDIVVATPGRLNDILEMRR--ISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRK 211 (547)
Q Consensus 136 ~-~~~~-~~IlV~Tp~~L~~~l~~~~--~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~ 211 (547)
+ +... ..|+|||.++|...+.... ..-.+--+||+|||||-- +...-..+...++ +...+.||+||-..-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-KAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc-cceEEEeeCCccccccc
Confidence 3 3333 4899999999988776541 112233478899999942 3333333344444 36789999997432211
Q ss_pred H-HHHhcCCCeEEEeCcccccccccceeEEEEEc------Cccc--------------------h---------------
Q 008956 212 I-AADLLVNPVQVNIGNVDELAANKAITQHIEVL------APMD--------------------K--------------- 249 (547)
Q Consensus 212 ~-~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~------~~~~--------------------k--------------- 249 (547)
. .............. .+.......++..+... .... +
T Consensus 420 ~tt~~~fg~ylh~Y~i-~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 420 DTTKDVFGDYLHTYTI-TDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred cchhhhhcceeEEEec-chhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 1 11111121111110 00000000111111110 0000 0
Q ss_pred ---HHH---HHHHHHh-cCCCCeEEEEcCChHHHHHHHHHHhccc-----------------c-------eEEEcCCCCH
Q 008956 250 ---HRR---LEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQF-----------------G-------AAAIHGDKSQ 298 (547)
Q Consensus 250 ---~~~---l~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~~~-----------------~-------~~~ihg~~~~ 298 (547)
... +...... .....++++.|.+...+..+++.+.... . ....|... .
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-K 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-H
Confidence 000 1111111 2334578888887775555544432210 0 00001112 2
Q ss_pred HHHHHHHHH--hhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCC----ceEEEEEec
Q 008956 299 SERDYVLNQ--FRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGA----TGVAYTFFG 367 (547)
Q Consensus 299 ~~R~~~l~~--F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~----~g~~~~l~~ 367 (547)
..+...... .+....+|||.++++-.|+|.|.++++. +|-|.-.-..+|.+.||.|.-. .|..+.|..
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 223333444 3467899999999999999999987655 7888888999999999999732 245554443
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.28 E-value=6e-12 Score=108.89 Aligned_cols=135 Identities=19% Similarity=0.125 Sum_probs=80.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 134 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 134 (547)
++-.++-..+|+|||.-.+.-++..... .+.++|||.|||.++..+.+.++.. .+++....-..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~------ 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR------ 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH------TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS-------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH------ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec------
Confidence 4456778899999998766554443322 1569999999999999988877543 24433221110
Q ss_pred HHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC--cHHHHHHHHHhCCCCceEEEEeccCcHHH
Q 008956 135 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG--FEPQIRKIVKEVPARRQTLMYTATWPREV 209 (547)
Q Consensus 135 ~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g--~~~~i~~i~~~l~~~~q~l~~SAT~~~~~ 209 (547)
....+.-|-|+|+..+..++.. .....++++||+||||-+-... +...+... .. .....+|++|||+|-..
T Consensus 68 -~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 -THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT--
T ss_pred -cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCC
Confidence 1224467999999999888766 5567899999999999632211 11222222 12 12357999999998644
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.18 E-value=3.8e-10 Score=112.54 Aligned_cols=73 Identities=23% Similarity=0.183 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 40 SPTPIQAQSWPI----ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 40 ~~~~~Q~~~i~~----il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
+|+|.|.+.+.. +..++++++.||||+|||+++++|++.++....... .+.+++|+++|..+.+|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-cccceeEEeccHHHHHHHHHHHHhc
Confidence 569999995544 556889999999999999999999987765422210 1248999999999999988777765
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.18 E-value=3.8e-10 Score=112.54 Aligned_cols=73 Identities=23% Similarity=0.183 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 40 SPTPIQAQSWPI----ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 40 ~~~~~Q~~~i~~----il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
+|+|.|.+.+.. +..++++++.||||+|||+++++|++.++....... .+.+++|+++|..+.+|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-cccceeEEeccHHHHHHHHHHHHhc
Confidence 569999995544 556889999999999999999999987765422210 1248999999999999988777765
No 168
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=1.6e-09 Score=110.32 Aligned_cols=344 Identities=21% Similarity=0.245 Sum_probs=214.3
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEE-cCCCchH--HHHHHHHHHHHhhhccC----------------C--------CCC
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAI-AKTGSGK--TLGYLLPGFIHLKRCRN----------------D--------PRL 89 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~-a~TGsGK--T~~~l~~~l~~l~~~~~----------------~--------~~~ 89 (547)
.-..+|+.|.+.+-...+-+|++.. ...+.|+ +..|++-++.++.+.++ + .-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 4458899999999999999998764 3335555 44677888887755211 0 012
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCC-c-eE-------EEEecCCCC--------Chhh-------------------
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSS-R-IS-------CTCLYGGAP--------KGPQ------------------- 133 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~-~-i~-------~~~~~g~~~--------~~~~------------------- 133 (547)
.|+||||||+|+-|-.+.+.+..+.... . -. ...-+++.+ +.+.
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 4899999999999999999887763211 1 00 001111100 0000
Q ss_pred ----HH--HhhCCCcEEEECcHHHHHHHhcCC------cCCCCeeEEEEecccccccCCcHHH--HHHHHHhCCCC----
Q 008956 134 ----LK--DIDRGVDIVVATPGRLNDILEMRR------ISLNQVSYLVLDEADRMLDMGFEPQ--IRKIVKEVPAR---- 195 (547)
Q Consensus 134 ----~~--~~~~~~~IlV~Tp~~L~~~l~~~~------~~l~~~~~lVlDEaH~ll~~g~~~~--i~~i~~~l~~~---- 195 (547)
++ .-....||+||+|=-|.-++.... -.++.+.++|||-||-|+...++.. +...+..+|..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCC
Confidence 11 112357999999998877776221 1256789999999998886554432 22223334431
Q ss_pred -----------------ceEEEEeccCcHHHHHHHHHhcCCCe-EEEeCccccc----ccccceeEEEE---EcCc----
Q 008956 196 -----------------RQTLMYTATWPREVRKIAADLLVNPV-QVNIGNVDEL----AANKAITQHIE---VLAP---- 246 (547)
Q Consensus 196 -----------------~q~l~~SAT~~~~~~~~~~~~l~~~~-~i~i~~~~~~----~~~~~i~~~~~---~~~~---- 246 (547)
+|+|+||+-..+....++..+..+.. .+........ .....+.|.+. ....
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 58899998877776666665544321 1111111000 00111222221 1111
Q ss_pred cchHHHHHH-HHHhc--CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc--
Q 008956 247 MDKHRRLEQ-ILRSQ--EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-- 320 (547)
Q Consensus 247 ~~k~~~l~~-~l~~~--~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-- 320 (547)
......... ++-.. .....+|||.++--+--.+-.++++. +....||.-.++..-.++-+.|..|...||+-|.
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 111121111 11111 12346899999998888888888865 5566677777777777888899999999999994
Q ss_pred ccccCCCCCCccEEEEcCCCCChhh---hHhhhccccCCC----CceEEEEEecCCChHHHHHHHHH
Q 008956 321 VAARGLDIKDIRVVVNYDFPTGVED---YVHRIGRTGRAG----ATGVAYTFFGDQDSRYASDLIKL 380 (547)
Q Consensus 321 ~~~~GiDip~v~~VI~~d~p~s~~~---yiQriGR~gR~g----~~g~~~~l~~~~~~~~~~~l~~~ 380 (547)
-.-+-.+|.+|..||+|.+|.+|.- ++.+++|+.-.| ..-.|.++|++.|.-.++.++-.
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGt 679 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGT 679 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhH
Confidence 4578889999999999999998864 456677775544 33588899999888766665533
No 169
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.07 E-value=3.5e-09 Score=115.57 Aligned_cols=318 Identities=19% Similarity=0.240 Sum_probs=192.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.++|+-.+.+-.+.-+..-|+-+.||-|||+++.+|+.-.... +..+.+|...--|+.--.+++..+....++
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~-------gkgVhvVTvNdYLA~RDae~m~~l~~~LGl 150 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA-------GKGVHVVTVNDYLARRDAEWMGPLYEFLGL 150 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC-------CCCcEEeeehHHhhhhCHHHHHHHHHHcCC
Confidence 4455566667777777888999999999999999998766555 678999999999999999999999988899
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcC------CcCCCCeeEEEEeccccccc----------C---
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRMLD----------M--- 179 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEaH~ll~----------~--- 179 (547)
.+.+...+....+....+ .|||..+|...| .|++... ......+.+.|+||+|-++= .
T Consensus 151 svG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~ 228 (822)
T COG0653 151 SVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAE 228 (822)
T ss_pred ceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccc
Confidence 988888777554443333 489999998765 2333211 12234578899999996551 1
Q ss_pred ---CcHHHHHHHHHhCCCC--------ceEEEEecc-C-------------cHH-------HHHH--HHHhcCCCeEEEe
Q 008956 180 ---GFEPQIRKIVKEVPAR--------RQTLMYTAT-W-------------PRE-------VRKI--AADLLVNPVQVNI 225 (547)
Q Consensus 180 ---g~~~~i~~i~~~l~~~--------~q~l~~SAT-~-------------~~~-------~~~~--~~~~l~~~~~i~i 225 (547)
.....+..++..+... .+.+.+|-. + ..+ +.+. +..++.....+.+
T Consensus 229 ~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIV 308 (822)
T COG0653 229 DSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIV 308 (822)
T ss_pred cCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEE
Confidence 1122333333222211 111111111 0 000 0000 0000000000000
Q ss_pred C----------------------------------------------------------------------------ccc
Q 008956 226 G----------------------------------------------------------------------------NVD 229 (547)
Q Consensus 226 ~----------------------------------------------------------------------------~~~ 229 (547)
. ..+
T Consensus 309 rd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~ 388 (822)
T COG0653 309 RDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLD 388 (822)
T ss_pred ecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCc
Confidence 0 000
Q ss_pred --ccccccce----eEEEEEcCccchHHHHHH-HHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHH
Q 008956 230 --ELAANKAI----TQHIEVLAPMDKHRRLEQ-ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSER 301 (547)
Q Consensus 230 --~~~~~~~i----~~~~~~~~~~~k~~~l~~-~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R 301 (547)
..+++..+ .....+.....|...++. +......+.++||-+.+++..+.+.+.|.+. ++..+++..-...+-
T Consensus 389 vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA 468 (822)
T COG0653 389 VVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREA 468 (822)
T ss_pred eeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHH
Confidence 00000000 001112223345544444 4445678899999999999999999999854 787788887775554
Q ss_pred HHHHHHhhcCCC-cEEEEccccccCCCCCCcc-----------EEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCC
Q 008956 302 DYVLNQFRAGRS-PVLVATDVAARGLDIKDIR-----------VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 369 (547)
Q Consensus 302 ~~~l~~F~~g~~-~ILVaT~~~~~GiDip~v~-----------~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~ 369 (547)
+.+.+ .|.. -|-|||.++++|-||.--. +||-...-.|..---|..||+||.|-+|..-.|++-.
T Consensus 469 ~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 469 EIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred HHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 44433 3333 4789999999999986322 4555555455556669999999999999877666543
No 170
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.96 E-value=6.8e-08 Score=102.27 Aligned_cols=109 Identities=18% Similarity=0.276 Sum_probs=90.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcc-c------------------ceEEEcCCCCHHHHHHHHHHhhcCC---CcEEEEc
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQ-F------------------GAAAIHGDKSQSERDYVLNQFRAGR---SPVLVAT 319 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~-~------------------~~~~ihg~~~~~~R~~~l~~F~~g~---~~ILVaT 319 (547)
.+.++|||.......+.+.+.|++. . ....+.|..+..+|++++++|++.. .-+|++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 3569999999999999999988752 2 2345778889999999999998532 2478899
Q ss_pred cccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCC
Q 008956 320 DVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 370 (547)
Q Consensus 320 ~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~ 370 (547)
.+..-|||+-..+.+|.||..|++.--.|.+-|+-|.|++..|+++--.-|
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 999999999999999999999999999999999999998887776654333
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.80 E-value=7.1e-08 Score=93.94 Aligned_cols=128 Identities=24% Similarity=0.260 Sum_probs=95.0
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 118 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~ 118 (547)
..|++.|..++=.+.+|+ |+...||-|||++..+|+...... |..|-|++.+..||..=++++..++...+
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-------G~~V~vvT~NdyLA~RD~~~~~~~y~~LG 146 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-------GKGVHVVTSNDYLAKRDAEEMRPFYEFLG 146 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-------SS-EEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-------cCCcEEEeccHHHhhccHHHHHHHHHHhh
Confidence 378888888886665555 999999999999988887777665 77999999999999999999999999999
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHH-HHHhcCC------cCCCCeeEEEEecccccc
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLN-DILEMRR------ISLNQVSYLVLDEADRML 177 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~-~~l~~~~------~~l~~~~~lVlDEaH~ll 177 (547)
+.+.++..+.+..+..... .++|+.+|...|. |+|.... .....+.++||||||.++
T Consensus 147 lsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 147 LSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp --EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999998877643322222 3789999998875 4554321 114578899999999765
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.77 E-value=1.8e-09 Score=118.01 Aligned_cols=279 Identities=22% Similarity=0.267 Sum_probs=166.3
Q ss_pred CccCCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 20 FDATGFPPELLREVH-NAGFSSPTPIQAQSWPIALQ-SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 20 f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~il~-g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
++-.++|...++... ..-|....|.|.+.+..+.. ..++++-+|||+|||++|.++++..+... ++.++++++
T Consensus 906 l~l~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~-----p~~kvvyIa 980 (1230)
T KOG0952|consen 906 LDLRPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY-----PGSKVVYIA 980 (1230)
T ss_pred cccCCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC-----CCccEEEEc
Confidence 333445544444332 22334666788887766654 46788999999999999999888876652 246999999
Q ss_pred CcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHh--cCCcCCCCeeEEEEecccc
Q 008956 98 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE--MRRISLNQVSYLVLDEADR 175 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~--~~~~~l~~~~~lVlDEaH~ 175 (547)
|-++|+..-.+.+.+.....++++..+.|+...+ ... ....+++|+||++...... ...-.+.+++.+|+||.|.
T Consensus 981 p~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd--~~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hl 1057 (1230)
T KOG0952|consen 981 PDKALVKERSDDWSKRDELPGIKVIELTGDVTPD--VKA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHL 1057 (1230)
T ss_pred CCchhhcccccchhhhcccCCceeEeccCccCCC--hhh-eecCceEEcccccccCccccccchhhhccccceeeccccc
Confidence 9999999999888887766689999888887765 122 2347999999999987765 3344578899999999996
Q ss_pred cccCCcHHHHHHHHHh-------CCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEE-------
Q 008956 176 MLDMGFEPQIRKIVKE-------VPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI------- 241 (547)
Q Consensus 176 ll~~g~~~~i~~i~~~-------l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~------- 241 (547)
+.+ +..+.+..+... .++..+.+.+|.-+ ....++.. ++.....+.... ...+.....++
T Consensus 1058 lg~-~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~-~na~dla~-wl~~~~~~nf~~---svrpvp~~~~i~gfp~~~ 1131 (1230)
T KOG0952|consen 1058 LGE-DRGPVLEVIVSRMNYISSQTEEPVRYLGLSTAL-ANANDLAD-WLNIKDMYNFRP---SVRPVPLEVHIDGFPGQH 1131 (1230)
T ss_pred ccC-CCcceEEEEeeccccCccccCcchhhhhHhhhh-hccHHHHH-HhCCCCcCCCCc---ccccCCceEeecCCCchh
Confidence 544 334433333222 22233444443222 12223333 332222121111 11111111111
Q ss_pred EEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHH----hcc-cceEEEcCCCCHHHHHHHHHHhhcCCCc
Q 008956 242 EVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNL----TRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSP 314 (547)
Q Consensus 242 ~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L----~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ 314 (547)
....-..+.......++...+..++|||+.+.+....-+..| ... -+...++.+ ..+-+.++...++...+
T Consensus 1132 ~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1132 YCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred cchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 111222344556677788888899999999877544333333 211 223334433 55666666666655443
No 173
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.72 E-value=1.2e-07 Score=103.65 Aligned_cols=100 Identities=18% Similarity=0.132 Sum_probs=85.2
Q ss_pred eEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCC-Cc-EEEEccccccCCCCCCccEEEEcCCCC
Q 008956 265 KIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR-SP-VLVATDVAARGLDIKDIRVVVNYDFPT 341 (547)
Q Consensus 265 k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~-~~-ILVaT~~~~~GiDip~v~~VI~~d~p~ 341 (547)
++|||+.....++.+...|... +....+.+.|+...|...+..|.++. .. .|++..+...|+|+..+.||+..|+-|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8888988888888888777643 56677889999999999999998543 23 356779999999999999999999999
Q ss_pred ChhhhHhhhccccCCCCceEEEE
Q 008956 342 GVEDYVHRIGRTGRAGATGVAYT 364 (547)
Q Consensus 342 s~~~yiQriGR~gR~g~~g~~~~ 364 (547)
++...-|.|-|+.|.|+...+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999998776655
No 174
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.66 E-value=2.8e-07 Score=90.08 Aligned_cols=181 Identities=18% Similarity=0.164 Sum_probs=115.8
Q ss_pred CCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhC----------CCcEEEEcCCCchHHHHHHHHHHHHh
Q 008956 11 DEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQ----------SRDIVAIAKTGSGKTLGYLLPGFIHL 80 (547)
Q Consensus 11 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~----------g~~vlv~a~TGsGKT~~~l~~~l~~l 80 (547)
..+++|-..+ .+.||++++.. -.+...|.+++-.+.+ ..-.++-..||.||-....-.++...
T Consensus 15 asv~~P~~~y-~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~ 87 (303)
T PF13872_consen 15 ASVAPPDPTY-RLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENW 87 (303)
T ss_pred hcCCCCCCCc-ccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHH
Confidence 3455555555 34677765442 2468889999877653 24577888999999886555555555
Q ss_pred hhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC--
Q 008956 81 KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-- 158 (547)
Q Consensus 81 ~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-- 158 (547)
... .++.|+++.+..|.......++.++.. .+.+..+..-. .. ........|+++||..|.......
T Consensus 88 l~G------r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~-~~---~~~~~~~GvlF~TYs~L~~~~~~~~~ 156 (303)
T PF13872_consen 88 LRG------RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFK-YG---DIIRLKEGVLFSTYSTLISESQSGGK 156 (303)
T ss_pred HcC------CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhc-cC---cCCCCCCCccchhHHHHHhHHhccCC
Confidence 441 336999999999999999999988755 23333322211 00 001223579999999987764321
Q ss_pred -CcCC---------CCeeEEEEecccccccCCc--------HHHHHHHHHhCCCCceEEEEeccCcHHHH
Q 008956 159 -RISL---------NQVSYLVLDEADRMLDMGF--------EPQIRKIVKEVPARRQTLMYTATWPREVR 210 (547)
Q Consensus 159 -~~~l---------~~~~~lVlDEaH~ll~~g~--------~~~i~~i~~~l~~~~q~l~~SAT~~~~~~ 210 (547)
...+ ..=.+|||||||.+.+..- ...+..+.+.+|+.+ ++..|||.-.+..
T Consensus 157 ~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~ 225 (303)
T PF13872_consen 157 YRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPR 225 (303)
T ss_pred ccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCc
Confidence 1111 1124899999999887642 135556777787666 9999999654443
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.63 E-value=5.2e-07 Score=100.99 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=58.9
Q ss_pred CCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCC--Cce--------EEEEEecCCChHHHHHHHHHH
Q 008956 312 RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAG--ATG--------VAYTFFGDQDSRYASDLIKLL 381 (547)
Q Consensus 312 ~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g--~~g--------~~~~l~~~~~~~~~~~l~~~l 381 (547)
..+.|++.+++.+|.|.|++-++.-+....|...-.|.+||..|.. +.| .-.++++.....++..|.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 6789999999999999999999999998889999999999999852 111 233455677778888888887
Q ss_pred HHh
Q 008956 382 EGA 384 (547)
Q Consensus 382 ~~~ 384 (547)
++.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 664
No 176
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.58 E-value=2.3e-06 Score=95.81 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=57.1
Q ss_pred CcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCc
Q 008956 141 VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWP 206 (547)
Q Consensus 141 ~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~ 206 (547)
..|+++||..|..-+..+.+.+..+..|||||||++....-+..|.++...-.+..-+.+|||.|.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 579999999998888888899999999999999999877667778788877777777899999854
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.55 E-value=8.3e-07 Score=85.57 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=50.0
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEcCCCchHHHHHHHHHHHHhhhc--cCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 008956 40 SPTPIQAQSWPIALQSRD-IVAIAKTGSGKTLGYLLPGFIHLKRC--RNDPRLGPTVLVLSPTRELATQIQDEAVK 112 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~-vlv~a~TGsGKT~~~l~~~l~~l~~~--~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~ 112 (547)
++.+.|.+|+..++.... .+|.+|+|+|||.+... ++..+... ......+.++|+++|+..-++++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 467899999999999998 89999999999965433 33333110 00112367999999999999999998877
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.47 E-value=1e-06 Score=82.44 Aligned_cols=146 Identities=12% Similarity=0.189 Sum_probs=76.4
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHH-------HHHHH
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI-------QDEAV 111 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~-------~~~~~ 111 (547)
...++.|..++.+++..+-+++.+|.|+|||+.++..++..+.... -.+++|+-|..+..+.+ .+.+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-----~~kiii~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-----YDKIIITRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS------SEEEEEE-S--TT----SS---------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-----CcEEEEEecCCCCccccccCCCCHHHHHH
Confidence 4568999999999998888899999999999999988888876622 34889988886532211 00010
Q ss_pred HhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHh
Q 008956 112 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE 191 (547)
Q Consensus 112 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~ 191 (547)
-+... + .......-.......+.....|-+..+..+. ...+. -.+||||||+.+ -..+++.++..
T Consensus 78 p~~~p--~--~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iR------Grt~~-~~~iIvDEaQN~----t~~~~k~ilTR 142 (205)
T PF02562_consen 78 PYLRP--I--YDALEELFGKEKLEELIQNGKIEIEPLAFIR------GRTFD-NAFIIVDEAQNL----TPEELKMILTR 142 (205)
T ss_dssp TTTHH--H--HHHHTTTS-TTCHHHHHHTTSEEEEEGGGGT------T--B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHH--H--HHHHHHHhChHhHHHHhhcCeEEEEehhhhc------Ccccc-ceEEEEecccCC----CHHHHHHHHcc
Confidence 00000 0 0000000011122333333456666544331 22333 389999999986 46788899989
Q ss_pred CCCCceEEEEecc
Q 008956 192 VPARRQTLMYTAT 204 (547)
Q Consensus 192 l~~~~q~l~~SAT 204 (547)
+..+.+++++--.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 8888877775433
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.45 E-value=9.4e-07 Score=83.12 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHHHhCCC--cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 008956 40 SPTPIQAQSWPIALQSR--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 117 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~--~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~ 117 (547)
+|++-|.+++..++... -+++.++.|+|||++ +..+...+.. .+.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~------~g~~v~~~apT~~Aa~~L~~~~~------ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA------AGKRVIGLAPTNKAAKELREKTG------ 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH------TT--EEEEESSHHHHHHHHHHHT------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh------CCCeEEEECCcHHHHHHHHHhhC------
Confidence 47899999999997654 467789999999975 3334444433 14699999999988887666521
Q ss_pred ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC----CcCCCCeeEEEEecccccccCCcHHHHHHHHHhCC
Q 008956 118 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR----RISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP 193 (547)
Q Consensus 118 ~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~----~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~ 193 (547)
+.+ .|..+++...... ...+...++||||||-.+ -...+..++..++
T Consensus 68 -~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~~ 118 (196)
T PF13604_consen 68 -IEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLAK 118 (196)
T ss_dssp -S-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS-
T ss_pred -cch------------------------hhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHHH
Confidence 111 1211111111100 011455679999999975 3567778888877
Q ss_pred C-CceEEEEecc
Q 008956 194 A-RRQTLMYTAT 204 (547)
Q Consensus 194 ~-~~q~l~~SAT 204 (547)
. ..+++++--+
T Consensus 119 ~~~~klilvGD~ 130 (196)
T PF13604_consen 119 KSGAKLILVGDP 130 (196)
T ss_dssp T-T-EEEEEE-T
T ss_pred hcCCEEEEECCc
Confidence 6 5666665444
No 180
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.42 E-value=2e-05 Score=85.56 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=59.1
Q ss_pred cCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCC--CCce-----------EEEEEecCCChHHHHH
Q 008956 310 AGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA--GATG-----------VAYTFFGDQDSRYASD 376 (547)
Q Consensus 310 ~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~--g~~g-----------~~~~l~~~~~~~~~~~ 376 (547)
+...+.+++..++-+|.|=|+|=.+.-.....|..+=+|.+||..|. .+.| .-.++++..+..+...
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~ 560 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKA 560 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHH
Confidence 35688999999999999999999999999999999999999999994 2222 2334566777777777
Q ss_pred HHHHHHH
Q 008956 377 LIKLLEG 383 (547)
Q Consensus 377 l~~~l~~ 383 (547)
|.+.++.
T Consensus 561 LqkEI~~ 567 (985)
T COG3587 561 LQKEIND 567 (985)
T ss_pred HHHHHHH
Confidence 7776653
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.35 E-value=2.3e-06 Score=78.32 Aligned_cols=103 Identities=19% Similarity=0.362 Sum_probs=74.0
Q ss_pred CeEEEEcCChHHHHHHHHHHhccc---ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc--ccccCCCCCC--ccEEEE
Q 008956 264 SKIIVFCSTKKMCDQLARNLTRQF---GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD--VAARGLDIKD--IRVVVN 336 (547)
Q Consensus 264 ~k~IVF~~s~~~~~~l~~~L~~~~---~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~--~~~~GiDip~--v~~VI~ 336 (547)
..+|||+++.+.++.+.+.++... ...++.. +..+...+++.|+.+.-.||+++. .+++|||+|+ ++.||.
T Consensus 10 g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii 87 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVII 87 (167)
T ss_dssp SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeee
Confidence 699999999999999999998642 2233333 355778899999999999999998 9999999996 678999
Q ss_pred cCCCC-Chh-----------------------------hhHhhhccccCCCCceEEEEEecC
Q 008956 337 YDFPT-GVE-----------------------------DYVHRIGRTGRAGATGVAYTFFGD 368 (547)
Q Consensus 337 ~d~p~-s~~-----------------------------~yiQriGR~gR~g~~g~~~~l~~~ 368 (547)
..+|. ++. ...|.+||+-|...+--++++++.
T Consensus 88 ~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 88 VGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp ES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 99885 221 235889999999887777777765
No 182
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.32 E-value=0.00011 Score=81.12 Aligned_cols=67 Identities=22% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 008956 39 SSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 112 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~ 112 (547)
..+.+.|.+++..++.. ..++|++|+|+|||.+....+...+.. +.++|+++||..-+.++.+.+.+
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35799999999999887 567889999999997654433333332 56999999999999999888876
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.28 E-value=9.8e-06 Score=76.57 Aligned_cols=151 Identities=21% Similarity=0.216 Sum_probs=98.2
Q ss_pred CCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhC---CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEE
Q 008956 19 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQ---SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 95 (547)
Q Consensus 19 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~---g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLi 95 (547)
.|+....|+.++-++.. =..+++.|.+++..+.+ +++.+.+.-+|.|||.+ ++|++..+.... ..-+.+
T Consensus 4 ~w~p~~~P~wLl~E~e~--~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg-----~~Lvrv 75 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES--NILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG-----SRLVRV 75 (229)
T ss_pred CCCchhChHHHHHHHHc--CceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC-----CcEEEE
Confidence 56777778888888873 24789999999999886 47899999999999965 778887766522 246778
Q ss_pred EcCcHHHHHHHHHHHHHhccC-CceEEEE--ecCCCCCh-h-------hHHHhhCCCcEEEECcHHHHHHHhcC------
Q 008956 96 LSPTRELATQIQDEAVKFGKS-SRISCTC--LYGGAPKG-P-------QLKDIDRGVDIVVATPGRLNDILEMR------ 158 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~-~~i~~~~--~~g~~~~~-~-------~~~~~~~~~~IlV~Tp~~L~~~l~~~------ 158 (547)
++| ++|..|..+.+..-... .+-.+.. ..-..... + .+.+......|+++||+.++.+....
T Consensus 76 iVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~ 154 (229)
T PF12340_consen 76 IVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQD 154 (229)
T ss_pred EcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHh
Confidence 888 58999998887754422 1112211 11111111 1 11233345679999999887654211
Q ss_pred -Cc-----------CCCCeeEEEEeccccccc
Q 008956 159 -RI-----------SLNQVSYLVLDEADRMLD 178 (547)
Q Consensus 159 -~~-----------~l~~~~~lVlDEaH~ll~ 178 (547)
.. .+.....=|+||+|.+++
T Consensus 155 ~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 155 GKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred cCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 10 022334568999998765
No 184
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.20 E-value=3.2e-05 Score=81.58 Aligned_cols=77 Identities=22% Similarity=0.217 Sum_probs=62.4
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 008956 32 EVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAV 111 (547)
Q Consensus 32 ~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~ 111 (547)
.+...++.++..-|..|+.++|+..-.|+++|+|+|||.+...- +.++.+. ...++|+++|+..-++|+++.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~I-Vyhl~~~-----~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATI-VYHLARQ-----HAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHH-HHHHHHh-----cCCceEEEcccchhHHHHHHHHH
Confidence 45556788999999999999999999999999999999865443 3344332 24589999999999999999887
Q ss_pred Hhc
Q 008956 112 KFG 114 (547)
Q Consensus 112 ~~~ 114 (547)
+.+
T Consensus 476 ~tg 478 (935)
T KOG1802|consen 476 KTG 478 (935)
T ss_pred hcC
Confidence 754
No 185
>PRK10536 hypothetical protein; Provisional
Probab=98.16 E-value=2.3e-05 Score=75.51 Aligned_cols=146 Identities=12% Similarity=0.060 Sum_probs=85.2
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHH--------
Q 008956 32 EVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA-------- 103 (547)
Q Consensus 32 ~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~-------- 103 (547)
.....++...+..|...+.++.+...+++.+++|+|||+.++..++..+.... -.+++|.-|+.+..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-----~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-----VDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred hcCCccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-----eeEEEEeCCCCCchhhhCcCCC
Confidence 33334666789999999999998888888999999999987777665553311 23667776764322
Q ss_pred ---HHHHHHHHHhccCCceEEEEecCCCCChhhHHHhh--CCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccccc
Q 008956 104 ---TQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID--RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 178 (547)
Q Consensus 104 ---~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~ 178 (547)
+.+...+.-+...... +.+. ..+..+. ..-.|-|.....+ . ...+ +-++||||||+.+
T Consensus 126 ~~~eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l~ym----R--Grtl-~~~~vIvDEaqn~-- 188 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPFAYM----R--GRTF-ENAVVILDEAQNV-- 188 (262)
T ss_pred CHHHHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecHHHh----c--CCcc-cCCEEEEechhcC--
Confidence 1111111111111000 0111 1112111 1224555543322 2 2223 2379999999986
Q ss_pred CCcHHHHHHHHHhCCCCceEEEE
Q 008956 179 MGFEPQIRKIVKEVPARRQTLMY 201 (547)
Q Consensus 179 ~g~~~~i~~i~~~l~~~~q~l~~ 201 (547)
-..+++.++..+..+.++|++
T Consensus 189 --~~~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 189 --TAAQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred --CHHHHHHHHhhcCCCCEEEEe
Confidence 357888888888887776664
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.14 E-value=1e-05 Score=83.47 Aligned_cols=108 Identities=20% Similarity=0.214 Sum_probs=68.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 136 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 136 (547)
-++|.+.+|||||+.++-.+... . ....+..+++++++..|...+.+.+.......
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~------------------- 58 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-Q----NSEEGKKVLYLCGNHPLRNKLREQLAKKYNPK------------------- 58 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-h----ccccCCceEEEEecchHHHHHHHHHhhhcccc-------------------
Confidence 36788999999998755433332 0 11125689999999999998888776543000
Q ss_pred hhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC-------cHHHHHHHHHh
Q 008956 137 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-------FEPQIRKIVKE 191 (547)
Q Consensus 137 ~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g-------~~~~i~~i~~~ 191 (547)
.....+..+..+...+.........+++|||||||+|.... ....+..++..
T Consensus 59 ---~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 59 ---LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 01234444444444333223456789999999999998731 23566666655
No 187
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.05 E-value=3e-05 Score=84.54 Aligned_cols=139 Identities=22% Similarity=0.290 Sum_probs=90.8
Q ss_pred CCCcHHHHHHHHHHhC----CCcEEEEcCCCchHHHHHHHHHHHHhhhcc-----------C------------------
Q 008956 39 SSPTPIQAQSWPIALQ----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCR-----------N------------------ 85 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~----g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~-----------~------------------ 85 (547)
.+|++.|...+..++. ..+.++..|||+|||++.|-..+.+..... .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 4889999988877765 568999999999999987766665543321 0
Q ss_pred --CC----CCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEE------EecC---------------------------
Q 008956 86 --DP----RLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCT------CLYG--------------------------- 126 (547)
Q Consensus 86 --~~----~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~------~~~g--------------------------- 126 (547)
++ -.-|++.+-+-|-.-..|+.+++++........+. |+..
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f~ 179 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHFY 179 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccccccc
Confidence 00 01367788888888888999998876554322211 0000
Q ss_pred -CCCCh-------------hh---------------HHHhhCCCcEEEECcHHHHHHHhcCC--cCCCCeeEEEEecccc
Q 008956 127 -GAPKG-------------PQ---------------LKDIDRGVDIVVATPGRLNDILEMRR--ISLNQVSYLVLDEADR 175 (547)
Q Consensus 127 -~~~~~-------------~~---------------~~~~~~~~~IlV~Tp~~L~~~l~~~~--~~l~~~~~lVlDEaH~ 175 (547)
..... +. -+.+.+.++||+|-|..|+|-..++. +++ .=.+|||||||.
T Consensus 180 ~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~L-knsIVIfDEAHN 258 (945)
T KOG1132|consen 180 KIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDL-KNSIVIFDEAHN 258 (945)
T ss_pred ccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccc-cccEEEEecccc
Confidence 00000 00 11334568999999999998776655 443 347899999998
Q ss_pred ccc
Q 008956 176 MLD 178 (547)
Q Consensus 176 ll~ 178 (547)
|.+
T Consensus 259 iEd 261 (945)
T KOG1132|consen 259 IED 261 (945)
T ss_pred HHH
Confidence 764
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.03 E-value=7.3e-05 Score=83.87 Aligned_cols=133 Identities=19% Similarity=0.122 Sum_probs=81.5
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 008956 32 EVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAV 111 (547)
Q Consensus 32 ~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~ 111 (547)
.+....-..+++.|++++..+..++-+++.+++|+|||++. -.++..+.... ....+++++||-.-+..+.+..
T Consensus 315 ~~~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~----~~~~v~l~ApTg~AA~~L~e~~- 388 (720)
T TIGR01448 315 EVEKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG----GLLPVGLAAPTGRAAKRLGEVT- 388 (720)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC----CCceEEEEeCchHHHHHHHHhc-
Confidence 34333335799999999999999898999999999999743 23333333210 0147899999977776554432
Q ss_pred HhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhc-----CCcCCCCeeEEEEecccccccCCcHHHHH
Q 008956 112 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM-----RRISLNQVSYLVLDEADRMLDMGFEPQIR 186 (547)
Q Consensus 112 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~-----~~~~l~~~~~lVlDEaH~ll~~g~~~~i~ 186 (547)
+... .|..+|+..... ..-.....++||||||+.+ + ...+.
T Consensus 389 ------g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMv-d---~~~~~ 434 (720)
T TIGR01448 389 ------GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMM-D---TWLAL 434 (720)
T ss_pred ------CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccC-C---HHHHH
Confidence 1110 111111110000 0011235789999999964 3 45667
Q ss_pred HHHHhCCCCceEEEEecc
Q 008956 187 KIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 187 ~i~~~l~~~~q~l~~SAT 204 (547)
.++..++...++|++--+
T Consensus 435 ~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 435 SLLAALPDHARLLLVGDT 452 (720)
T ss_pred HHHHhCCCCCEEEEECcc
Confidence 778888888888876544
No 189
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.02 E-value=7.7e-05 Score=81.41 Aligned_cols=143 Identities=20% Similarity=0.189 Sum_probs=86.8
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEE
Q 008956 42 TPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISC 121 (547)
Q Consensus 42 ~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~ 121 (547)
.++|+.++..++.++-+++.+++|+|||++.. .++..+....... ...++++++||-.-+..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~-~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQ-GKLRIALAAPTGKAAARLAESLRKAVKNLAAA- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhcccc-CCCcEEEECCcHHHHHHHHHHHHhhhcccccc-
Confidence 37999999999999999999999999997532 2333332211110 12479999999877777776665433221110
Q ss_pred EEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhc------CCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCC
Q 008956 122 TCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM------RRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 195 (547)
Q Consensus 122 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~------~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~ 195 (547)
.. ......+-..|..+|+..... ..-....+++||||||-. ++ ...+..++..++..
T Consensus 224 ---------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSM-vd---~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 ---------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASM-VD---LPLMAKLLKALPPN 286 (586)
T ss_pred ---------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEccccc-CC---HHHHHHHHHhcCCC
Confidence 00 000111224444444332210 011233578999999995 43 45677888889888
Q ss_pred ceEEEEecc
Q 008956 196 RQTLMYTAT 204 (547)
Q Consensus 196 ~q~l~~SAT 204 (547)
.++|++--.
T Consensus 287 ~rlIlvGD~ 295 (586)
T TIGR01447 287 TKLILLGDK 295 (586)
T ss_pred CEEEEECCh
Confidence 888876544
No 190
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.00 E-value=0.00011 Score=80.35 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=86.9
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceE
Q 008956 41 PTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 120 (547)
Q Consensus 41 ~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~ 120 (547)
..++|+.|+..++..+-++|.+++|+|||++.. .++..+..... ....++++++||-.-+..+.+.+........+.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~--~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLAD--GERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcC--CCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 358999999999999999999999999997532 22233322111 113478999999888888777665433221110
Q ss_pred EEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHh------cCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCC
Q 008956 121 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE------MRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 194 (547)
Q Consensus 121 ~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~------~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~ 194 (547)
. ........-..|..+|+.... ...-....+++||||||-. ++ ...+..++..+++
T Consensus 230 ----------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM-vd---~~lm~~ll~al~~ 291 (615)
T PRK10875 230 ----------D----EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASM-VD---LPMMARLIDALPP 291 (615)
T ss_pred ----------h----hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhc-cc---HHHHHHHHHhccc
Confidence 0 000001112333333332211 1111233568999999995 43 5677788888998
Q ss_pred CceEEEEecc
Q 008956 195 RRQTLMYTAT 204 (547)
Q Consensus 195 ~~q~l~~SAT 204 (547)
..++|++--.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8888887554
No 191
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.93 E-value=2.7e-05 Score=81.79 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHhCCCc-EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 39 SSPTPIQAQSWPIALQSRD-IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~-vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
..+.+-|++|+..+...++ .++++|+|+|||.+....+...+.. +.++||++||.+-++.+.+.+
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-------CCeEEEEcCchHHHHHHHHHh
Confidence 3678899999999998866 5677999999998765555555554 679999999999999998864
No 192
>PF13245 AAA_19: Part of AAA domain
Probab=97.83 E-value=8.5e-05 Score=58.18 Aligned_cols=60 Identities=33% Similarity=0.351 Sum_probs=40.9
Q ss_pred HHHHHhC-CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 48 SWPIALQ-SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 48 ~i~~il~-g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
++...++ .+-++|.+|+|||||...+-.+...+... ... +.++||++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-~~~--~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-ADP--GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-cCC--CCeEEEECCCHHHHHHHHHHH
Confidence 4554444 44456699999999976554444444211 111 568999999999999988887
No 193
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.00017 Score=75.54 Aligned_cols=134 Identities=17% Similarity=0.171 Sum_probs=73.7
Q ss_pred EEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH-----hcc-------CCceEEEEecCC
Q 008956 60 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK-----FGK-------SSRISCTCLYGG 127 (547)
Q Consensus 60 v~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~-----~~~-------~~~i~~~~~~g~ 127 (547)
..+.||||||++....++...... -...|+.|....+++.....+.. +.- ...+.+..+-
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn-- 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN-- 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec--
Confidence 357899999987665555555442 23678888877777776554421 110 0111111111
Q ss_pred CCChhhHHHhhCCCcEEEECcHHHHHHHhcCC---cC---CCCeeE-EEEecccccccCC-------------cHHHHHH
Q 008956 128 APKGPQLKDIDRGVDIVVATPGRLNDILEMRR---IS---LNQVSY-LVLDEADRMLDMG-------------FEPQIRK 187 (547)
Q Consensus 128 ~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~---~~---l~~~~~-lVlDEaH~ll~~g-------------~~~~i~~ 187 (547)
..........|+++|.+.|...+.+.. +. +.+..+ .+-||||++-... +...+..
T Consensus 74 -----~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~l 148 (812)
T COG3421 74 -----NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKL 148 (812)
T ss_pred -----ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHH
Confidence 111233457899999999977664332 22 333444 4559999875321 1111111
Q ss_pred HHHhCCCCceEEEEeccCcH
Q 008956 188 IVKEVPARRQTLMYTATWPR 207 (547)
Q Consensus 188 i~~~l~~~~q~l~~SAT~~~ 207 (547)
.++ -.+..-++.+|||.|.
T Consensus 149 a~~-~nkd~~~lef~at~~k 167 (812)
T COG3421 149 ALE-QNKDNLLLEFSATIPK 167 (812)
T ss_pred HHh-cCCCceeehhhhcCCc
Confidence 111 1234457889999983
No 194
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.73 E-value=0.00065 Score=76.61 Aligned_cols=122 Identities=21% Similarity=0.164 Sum_probs=73.0
Q ss_pred CCCcHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 008956 39 SSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 117 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~ 117 (547)
..+++-|++++..++.+ +-++|.+++|+|||+.. -.+...+.. .+.++++++||-.-+..+.+. .
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~~-------~ 416 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA------AGYRVIGAALSGKAAEGLQAE-------S 416 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh------CCCeEEEEeCcHHHHHHHHhc-------c
Confidence 46899999999999885 56788899999999642 223333222 156899999997665554432 1
Q ss_pred ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHh-CCCCc
Q 008956 118 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE-VPARR 196 (547)
Q Consensus 118 ~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~-l~~~~ 196 (547)
++... |..++...+......+...++||||||-.+- ...+..++.. .....
T Consensus 417 g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~----~~~~~~Ll~~~~~~~~ 468 (744)
T TIGR02768 417 GIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVG----SRQMARVLKEAEEAGA 468 (744)
T ss_pred CCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCC----HHHHHHHHHHHHhcCC
Confidence 22111 2222211112222335678999999999543 2344455553 23456
Q ss_pred eEEEEe
Q 008956 197 QTLMYT 202 (547)
Q Consensus 197 q~l~~S 202 (547)
++|++-
T Consensus 469 kliLVG 474 (744)
T TIGR02768 469 KVVLVG 474 (744)
T ss_pred EEEEEC
Confidence 666654
No 195
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.67 E-value=0.00028 Score=77.89 Aligned_cols=153 Identities=25% Similarity=0.227 Sum_probs=97.2
Q ss_pred CCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCc-EEEEcCCCchHHHHHHHHHHHHhhhccCCCCC
Q 008956 11 DEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD-IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL 89 (547)
Q Consensus 11 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~-vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~ 89 (547)
+..||.+.......+++.+.+.+ +..+..-|++|+-.++.-+| .||.+=+|+|||......+-..+..
T Consensus 644 d~~pP~f~~~~~~~~~p~~~~~~----~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~------- 712 (1100)
T KOG1805|consen 644 DLKPPKFVDALSKVLIPKIKKII----LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL------- 712 (1100)
T ss_pred hcCCchhhcccccccCchhhHHH----HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc-------
Confidence 34566666666677777777752 34788999999998887765 6778899999998544332222222
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCC-------ceE----EEEecCCC--CChhhHHHhhCCCcEEEECcHHHHHHHh
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSS-------RIS----CTCLYGGA--PKGPQLKDIDRGVDIVVATPGRLNDILE 156 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~-------~i~----~~~~~g~~--~~~~~~~~~~~~~~IlV~Tp~~L~~~l~ 156 (547)
+++||+.+=|-.-+..+.-.++.+.... .++ -.++..+. ..-..++...+...||.+|.=-+.+.+.
T Consensus 713 gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf 792 (1100)
T KOG1805|consen 713 GKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF 792 (1100)
T ss_pred CCeEEEEehhhHHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh
Confidence 6799999999988888877776654220 000 00111111 1112233444557788888655544332
Q ss_pred cCCcCCCCeeEEEEeccccccc
Q 008956 157 MRRISLNQVSYLVLDEADRMLD 178 (547)
Q Consensus 157 ~~~~~l~~~~~lVlDEaH~ll~ 178 (547)
...++++.|||||-.++.
T Consensus 793 ----~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 793 ----VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ----hccccCEEEEcccccccc
Confidence 345689999999998753
No 196
>PRK04296 thymidine kinase; Provisional
Probab=97.61 E-value=0.00015 Score=67.75 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=58.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCc---HHHHHHHHHHHHHhccCCceEEEEecCCCCChhh
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT---RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ 133 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Pt---r~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~ 133 (547)
-.++.+++|+|||+.++-.+...... +.+++|+-|. +.... .+....++...
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~-------g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~~----------- 58 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER-------GMKVLVFKPAIDDRYGEG-------KVVSRIGLSRE----------- 58 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc-------CCeEEEEeccccccccCC-------cEecCCCCccc-----------
Confidence 36788999999997665544444333 5588888663 21111 11111111110
Q ss_pred HHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 134 LKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 134 ~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
.+.+..+..+.+.+.. ...++++|||||+|.+- ..++..++..+.+....+.+++-
T Consensus 59 --------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 --------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred --------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 1223444555554443 33568899999998641 34466666664444445555544
No 197
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.59 E-value=0.0011 Score=76.08 Aligned_cols=124 Identities=20% Similarity=0.153 Sum_probs=75.9
Q ss_pred CCCcHHHHHHHHHHhCCCc-EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 008956 39 SSPTPIQAQSWPIALQSRD-IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 117 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~-vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~ 117 (547)
..+++-|++++..++.+++ ++|.+..|+|||++ +-.+...... .+.+++.++||-.-+..+.+. .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~------~G~~V~~~ApTGkAA~~L~e~-------t 410 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA------AGYEVRGAALSGIAAENLEGG-------S 410 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH------cCCeEEEecCcHHHHHHHhhc-------c
Confidence 3799999999999998665 67789999999975 3333333322 256899999997655444321 1
Q ss_pred ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhC-CCCc
Q 008956 118 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARR 196 (547)
Q Consensus 118 ~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l-~~~~ 196 (547)
++.. .|..+|..-.......+...++||||||-.+ + ...+..++... +...
T Consensus 411 Gi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv-~---~~~m~~LL~~a~~~ga 462 (988)
T PRK13889 411 GIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMV-G---TRQLERVLSHAADAGA 462 (988)
T ss_pred Ccch------------------------hhHHHHHhhhcccccccccCcEEEEECcccC-C---HHHHHHHHHhhhhCCC
Confidence 2211 1222222111122233556789999999954 2 34555666543 4466
Q ss_pred eEEEEecc
Q 008956 197 QTLMYTAT 204 (547)
Q Consensus 197 q~l~~SAT 204 (547)
++|++--+
T Consensus 463 rvVLVGD~ 470 (988)
T PRK13889 463 KVVLVGDP 470 (988)
T ss_pred EEEEECCH
Confidence 77776554
No 198
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.53 E-value=0.00028 Score=79.78 Aligned_cols=153 Identities=18% Similarity=0.087 Sum_probs=94.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhc-----------cCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEE
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRC-----------RNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTC 123 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~-----------~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~ 123 (547)
++++++...+|.|||.+-+...+..+... ..+....+.+|||||. ++..||.+++.+..... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 46778888999999987665544432211 1122234578999996 88899999999988765 66665
Q ss_pred ecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCc--------------CCC------CeeEEEEecccccccCCcHH
Q 008956 124 LYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI--------------SLN------QVSYLVLDEADRMLDMGFEP 183 (547)
Q Consensus 124 ~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~--------------~l~------~~~~lVlDEaH~ll~~g~~~ 183 (547)
..|-.............+|||+|||+.|..-+..... ... .|=-|+||||+.+-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 5553322111112233589999999999776643211 000 112389999995433 344
Q ss_pred HHHHHHHhCCCCceEEEEeccCcHHHHHH
Q 008956 184 QIRKIVKEVPARRQTLMYTATWPREVRKI 212 (547)
Q Consensus 184 ~i~~i~~~l~~~~q~l~~SAT~~~~~~~~ 212 (547)
...+.+..++. ...-..|+||-..+.++
T Consensus 530 ~~a~M~~rL~~-in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 530 AAAEMVRRLHA-INRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHhhh-hceeeecCCchhhhhhh
Confidence 55555555553 33567799976554443
No 199
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.48 E-value=0.0006 Score=67.94 Aligned_cols=145 Identities=21% Similarity=0.297 Sum_probs=88.4
Q ss_pred CCCCCCcHHHHHHHHHHhCCC--cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 36 AGFSSPTPIQAQSWPIALQSR--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 36 ~g~~~~~~~Q~~~i~~il~g~--~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
.|+......|.-|+..++... -|.+.++.|||||+.++.+.+........ ..++||.=|+..+-+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~----y~KiiVtRp~vpvG~dI------- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR----YRKIIVTRPTVPVGEDI------- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh----hceEEEecCCcCccccc-------
Confidence 478888899999999998864 36667999999999988888877655322 34788888876544321
Q ss_pred ccCCceEEEEecCCCC--ChhhHHHhhCCC----cEEEECcHHHHHHHhcCCcCCCC----------eeEEEEecccccc
Q 008956 114 GKSSRISCTCLYGGAP--KGPQLKDIDRGV----DIVVATPGRLNDILEMRRISLNQ----------VSYLVLDEADRML 177 (547)
Q Consensus 114 ~~~~~i~~~~~~g~~~--~~~~~~~~~~~~----~IlV~Tp~~L~~~l~~~~~~l~~----------~~~lVlDEaH~ll 177 (547)
+- +=|..+ ...+...+.+.- ..-=++.+.|...+.+..+.+.. -.+||||||+.+
T Consensus 293 Gf--------LPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL- 363 (436)
T COG1875 293 GF--------LPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL- 363 (436)
T ss_pred Cc--------CCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc-
Confidence 00 000000 000111111110 11112234455555544443322 258999999987
Q ss_pred cCCcHHHHHHHHHhCCCCceEEEEec
Q 008956 178 DMGFEPQIRKIVKEVPARRQTLMYTA 203 (547)
Q Consensus 178 ~~g~~~~i~~i~~~l~~~~q~l~~SA 203 (547)
-..+++.|+...-...+++++.-
T Consensus 364 ---TpheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 364 ---TPHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred ---CHHHHHHHHHhccCCCEEEEcCC
Confidence 46789999999988888887543
No 200
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.45 E-value=0.0028 Score=73.28 Aligned_cols=137 Identities=18% Similarity=0.142 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHH
Q 008956 25 FPPELLREVHNAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 103 (547)
Q Consensus 25 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~ 103 (547)
+++..++.....+ ..+++-|.+++..+... +-++|.+..|+|||++ +-++...... .+.+++.++||-.-+
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~------~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA------AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH------cCCeEEEEcCcHHHH
Confidence 3444444444333 47999999999988654 5578889999999974 3333333322 256899999996665
Q ss_pred HHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHH
Q 008956 104 TQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEP 183 (547)
Q Consensus 104 ~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~ 183 (547)
..+.+. .++... |..+|+.........+..-++||||||..+ + ..
T Consensus 439 ~~L~e~-------~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv-~---~~ 483 (1102)
T PRK13826 439 EGLEKE-------AGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMV-A---SR 483 (1102)
T ss_pred HHHHHh-------hCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccC-C---HH
Confidence 554332 122221 212221111111233556779999999954 2 45
Q ss_pred HHHHHHHhCC-CCceEEEEecc
Q 008956 184 QIRKIVKEVP-ARRQTLMYTAT 204 (547)
Q Consensus 184 ~i~~i~~~l~-~~~q~l~~SAT 204 (547)
.+..++...+ ...++|++--+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 5666666654 45677776554
No 201
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.39 E-value=0.002 Score=56.44 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
++.+++.+++|+|||..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999643
No 202
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.38 E-value=0.00058 Score=68.92 Aligned_cols=123 Identities=17% Similarity=0.066 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceE
Q 008956 41 PTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 120 (547)
Q Consensus 41 ~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~ 120 (547)
+++-|.+++.. ....++|.|..|||||.+.+.-++..+...... ..++|++++|+..+..+.+.+..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~---~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~ 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVP---PERILVLTFTNAAAQEMRERIRELLEEEQQE 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSST---GGGEEEEESSHHHHHHHHHHHHHHHHHCCHC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCC---hHHheecccCHHHHHHHHHHHHHhcCccccc
Confidence 57889999988 778899999999999988766655555543222 4579999999999999998888764332110
Q ss_pred EEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCC--CCeeEEEEeccc
Q 008956 121 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISL--NQVSYLVLDEAD 174 (547)
Q Consensus 121 ~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l--~~~~~lVlDEaH 174 (547)
. ............-..+.|.|...+...+.+..... -.-.+-++|+..
T Consensus 76 ~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 S------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp C------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred c------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 00011112222345789999888765443221111 123456777776
No 203
>PRK06526 transposase; Provisional
Probab=97.38 E-value=0.00032 Score=68.58 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=60.5
Q ss_pred HHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCC
Q 008956 50 PIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAP 129 (547)
Q Consensus 50 ~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~ 129 (547)
+.+..+.++++++|+|+|||..+...+...... +.+++++.. .+|+.++.... .
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~-------g~~v~f~t~-~~l~~~l~~~~----~-------------- 146 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQA-------GHRVLFATA-AQWVARLAAAH----H-------------- 146 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHC-------CCchhhhhH-HHHHHHHHHHH----h--------------
Confidence 345567899999999999997655433333322 445655433 34555443210 0
Q ss_pred ChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCc-HHHHHHHHHhCCCCceEEEEeccCcHH
Q 008956 130 KGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF-EPQIRKIVKEVPARRQTLMYTATWPRE 208 (547)
Q Consensus 130 ~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~-~~~i~~i~~~l~~~~q~l~~SAT~~~~ 208 (547)
. .+ +.+.+. .+..+++|||||+|.+..... ...+..++........+|++|..++..
T Consensus 147 ---------~------~~---~~~~l~----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 147 ---------A------GR---LQAELV----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred ---------c------Cc---HHHHHH----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 0 01 111111 134578999999997532211 223445554433345688888776654
No 204
>PRK08181 transposase; Validated
Probab=97.35 E-value=0.0038 Score=61.51 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=67.1
Q ss_pred cHHHHHHH----HHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 008956 42 TPIQAQSW----PIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 117 (547)
Q Consensus 42 ~~~Q~~~i----~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~ 117 (547)
...|..++ .++..++++++++|+|+|||..+...+...+.. +.+++++ +..+|+.++......
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~-~~~~L~~~l~~a~~~----- 155 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFT-RTTDLVQKLQVARRE----- 155 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeee-eHHHHHHHHHHHHhC-----
Confidence 34555444 234567899999999999996544333222222 3455554 455676665432100
Q ss_pred ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCc-HHHHHHHHHhCCCCc
Q 008956 118 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF-EPQIRKIVKEVPARR 196 (547)
Q Consensus 118 ~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~-~~~i~~i~~~l~~~~ 196 (547)
.+.+.++.. +.++++|||||.+.+..... ...+..+++......
T Consensus 156 ----------------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~ 200 (269)
T PRK08181 156 ----------------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERR 200 (269)
T ss_pred ----------------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC
Confidence 011112221 34577999999997543322 234555665544445
Q ss_pred eEEEEeccCcHHHH
Q 008956 197 QTLMYTATWPREVR 210 (547)
Q Consensus 197 q~l~~SAT~~~~~~ 210 (547)
.+|+.|...+.+..
T Consensus 201 s~IiTSN~~~~~w~ 214 (269)
T PRK08181 201 SILITANQPFGEWN 214 (269)
T ss_pred CEEEEcCCCHHHHH
Confidence 67777777665443
No 205
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.32 E-value=0.00061 Score=59.22 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=22.5
Q ss_pred eEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccC
Q 008956 166 SYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 205 (547)
Q Consensus 166 ~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~ 205 (547)
.+|||||||++.+ ...+..+........-.+++++|+
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEECh
Confidence 6899999999632 444444444444444455555554
No 206
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.29 E-value=3.9e-05 Score=83.38 Aligned_cols=65 Identities=25% Similarity=0.373 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHhcccceEEEcCCCCHHHHHHHHHHhhc---CCCcEEEEccccccC
Q 008956 261 EPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRA---GRSPVLVATDVAARG 325 (547)
Q Consensus 261 ~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg~~~~~~R~~~l~~F~~---g~~~ILVaT~~~~~G 325 (547)
..+.+++||...+...+.+.+++........+.|..+..+|+.++..|+. ....+|.+|.+.+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 56789999999999999999999876688899999999999999999983 456688899876544
No 207
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0064 Score=62.97 Aligned_cols=130 Identities=13% Similarity=0.128 Sum_probs=67.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEE-EEEcCc-HHHHHHHHHHHHHhccCCceEEEEecCCCCChhh
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTV-LVLSPT-RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ 133 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~v-Lil~Pt-r~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~ 133 (547)
+.+++++|||+|||++..-.+......... .+.++ ||-+-+ |.-+.++ ++.++...++.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~---~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv------------ 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD---KSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPV------------ 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc---CCCeEEEEeccCccHHHHHH---HHHHhhcCCcce------------
Confidence 457788999999998765433322221110 12344 444444 2222222 344443333322
Q ss_pred HHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC-cHHHHHHHHHhCCCC-ceEEEEeccCcHH-HH
Q 008956 134 LKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPAR-RQTLMYTATWPRE-VR 210 (547)
Q Consensus 134 ~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l~~~-~q~l~~SAT~~~~-~~ 210 (547)
.++-++..+...+.. +.++++|+||++.++.... ....+..++...... ..+|.+|||.... +.
T Consensus 237 ---------~~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 237 ---------KAIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ---------EeeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 112234445444432 3578999999999875321 123455555554433 4678899997643 44
Q ss_pred HHHHHh
Q 008956 211 KIAADL 216 (547)
Q Consensus 211 ~~~~~~ 216 (547)
+.+..+
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 445544
No 208
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.27 E-value=0.0014 Score=71.86 Aligned_cols=45 Identities=9% Similarity=-0.068 Sum_probs=36.2
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhh
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK 81 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~ 81 (547)
+.-+-+.+-+++++.+++..+++....++++||....+.++..+.
T Consensus 403 gcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva 447 (1282)
T KOG0921|consen 403 GCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVA 447 (1282)
T ss_pred cccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHH
Confidence 344668888999999999999999999999999876666665543
No 209
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.22 E-value=0.0028 Score=56.07 Aligned_cols=74 Identities=18% Similarity=0.247 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHhhcCC-CcEEEEccccccCCCCCC--ccEEEEcCCCCC-h---------------------------
Q 008956 295 DKSQSERDYVLNQFRAGR-SPVLVATDVAARGLDIKD--IRVVVNYDFPTG-V--------------------------- 343 (547)
Q Consensus 295 ~~~~~~R~~~l~~F~~g~-~~ILVaT~~~~~GiDip~--v~~VI~~d~p~s-~--------------------------- 343 (547)
..+..+...+++.|+... ..||++|.-+++|||+|+ ++.||...+|.- +
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLP 109 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 344445677888888654 379999988999999997 567888887741 1
Q ss_pred ---hhhHhhhccccCCCCceEEEEEecC
Q 008956 344 ---EDYVHRIGRTGRAGATGVAYTFFGD 368 (547)
Q Consensus 344 ---~~yiQriGR~gR~g~~g~~~~l~~~ 368 (547)
..+.|.+||+-|...+--++++++.
T Consensus 110 ~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 110 DAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHhCccccCcCceEEEEEEec
Confidence 1335888999998766656666643
No 210
>PRK14974 cell division protein FtsY; Provisional
Probab=97.18 E-value=0.0078 Score=61.15 Aligned_cols=130 Identities=21% Similarity=0.267 Sum_probs=72.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCc---HHHHHHHHHHHHHhccCCceEEEEecCCCCChhh
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT---RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ 133 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Pt---r~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~ 133 (547)
-+++.+++|+|||++....+. .+.. .+.+++++... ..-..|+......+. +.+.....+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~-~l~~------~g~~V~li~~Dt~R~~a~eqL~~~a~~lg----v~v~~~~~g~----- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAY-YLKK------NGFSVVIAAGDTFRAGAIEQLEEHAERLG----VKVIKHKYGA----- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HHHH------cCCeEEEecCCcCcHHHHHHHHHHHHHcC----CceecccCCC-----
Confidence 366789999999986543332 2222 13456555432 344556655554433 2221111000
Q ss_pred HHHhhCCCcEEEECcHH-HHHHHhcCCcCCCCeeEEEEeccccccc-CCcHHHHHHHHHhCCCCceEEEEeccCcHHHHH
Q 008956 134 LKDIDRGVDIVVATPGR-LNDILEMRRISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRK 211 (547)
Q Consensus 134 ~~~~~~~~~IlV~Tp~~-L~~~l~~~~~~l~~~~~lVlDEaH~ll~-~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~ 211 (547)
.|.. +.+.+.. .....+++|+||.+.++-. ......+..+.....+...++.++||...+...
T Consensus 206 -------------dp~~v~~~ai~~--~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~ 270 (336)
T PRK14974 206 -------------DPAAVAYDAIEH--AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE 270 (336)
T ss_pred -------------CHHHHHHHHHHH--HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH
Confidence 1111 1122221 1123567999999998752 335566777777777777789999998766666
Q ss_pred HHHHhc
Q 008956 212 IAADLL 217 (547)
Q Consensus 212 ~~~~~l 217 (547)
.+..+.
T Consensus 271 ~a~~f~ 276 (336)
T PRK14974 271 QAREFN 276 (336)
T ss_pred HHHHHH
Confidence 665553
No 211
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.16 E-value=0.0031 Score=65.35 Aligned_cols=73 Identities=14% Similarity=0.039 Sum_probs=48.5
Q ss_pred CCCCCcHHHHHHHHHH----hCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 008956 37 GFSSPTPIQAQSWPIA----LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 112 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~i----l~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~ 112 (547)
.|...+|-|.+=+-.+ -.+.++++.+|+|+|||.+.|..++.+....... ..+.++.+-|..-.+...++++.
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~---~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDE---HRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcc---cceEEEecCcchHHHHHHHHHHH
Confidence 3566677777655443 3456899999999999987666666555443322 34778877776666665555544
No 212
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.14 E-value=0.03 Score=69.53 Aligned_cols=210 Identities=10% Similarity=0.091 Sum_probs=111.5
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 008956 40 SPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 117 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~ 117 (547)
.+++-|++++..++.. +-.+|.++.|+|||.+ +-.+...... .+..+++++||-.-+.++.+.......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~~g~~A~-- 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE------QGYEIQIITAGSLSAQELRQKIPRLAS-- 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHhcchhh--
Confidence 6899999999999886 4578889999999964 3333333222 266999999998766665554321110
Q ss_pred ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhC-CCCc
Q 008956 118 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARR 196 (547)
Q Consensus 118 ~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l-~~~~ 196 (547)
.....+..+.. ..-..|...|+ .....+...++||||||-.+ + ...+..++... +...
T Consensus 500 -----------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl-~---~~~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 500 -----------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKL-S---NNELLKLIDKAEQHNS 558 (1960)
T ss_pred -----------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCC-C---HHHHHHHHHHHhhcCC
Confidence 00011111111 11122222332 12233456789999999955 2 45667777655 4577
Q ss_pred eEEEEecc--Cc----HHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhc-CCCCeEEEE
Q 008956 197 QTLMYTAT--WP----REVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVF 269 (547)
Q Consensus 197 q~l~~SAT--~~----~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-~~~~k~IVF 269 (547)
++|++--+ ++ -.+..++...- -..+.+..... ....+ .+...........+...+... ....+++|+
T Consensus 559 rvVlvGD~~QL~sV~aG~~f~~L~~~g--v~t~~l~~i~r--q~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 559 KLILLNDSAQRQGMSAGSAIDLLKEGG--VTTYAWVDTKQ--QKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred EEEEEcChhhcCccccchHHHHHHHCC--CcEEEeecccc--cCcce--eeeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 88877665 11 12333333221 11122211110 00111 111122222223343333333 344468999
Q ss_pred cCChHHHHHHHHHHhc
Q 008956 270 CSTKKMCDQLARNLTR 285 (547)
Q Consensus 270 ~~s~~~~~~l~~~L~~ 285 (547)
..+.++...|...++.
T Consensus 633 ~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRN 648 (1960)
T ss_pred cCCcHHHHHHHHHHHH
Confidence 9998888888887754
No 213
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.05 E-value=0.0015 Score=56.80 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 103 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~ 103 (547)
+..+++.+|+|+|||...... ...+.. ....++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l-~~~~~~------~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL-ARELGP------PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH-HhccCC------CCCCEEEECCEEccc
Confidence 457899999999999754332 222211 012577777765443
No 214
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.04 E-value=0.0035 Score=55.51 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=50.7
Q ss_pred HHHHHHHHhhcCCC---cEEEEccc--cccCCCCCC--ccEEEEcCCCCC----h-------------------------
Q 008956 300 ERDYVLNQFRAGRS---PVLVATDV--AARGLDIKD--IRVVVNYDFPTG----V------------------------- 343 (547)
Q Consensus 300 ~R~~~l~~F~~g~~---~ILVaT~~--~~~GiDip~--v~~VI~~d~p~s----~------------------------- 343 (547)
+...+++.|++..- .||+++.- +++|||+|+ ++.||.+.+|.- +
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44677888876443 58888866 999999997 578998888741 1
Q ss_pred --hhhHhhhccccCCCCceEEEEEecC
Q 008956 344 --EDYVHRIGRTGRAGATGVAYTFFGD 368 (547)
Q Consensus 344 --~~yiQriGR~gR~g~~g~~~~l~~~ 368 (547)
....|.+||+-|...+--++++++.
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEec
Confidence 1235889999999877667767654
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.04 E-value=0.012 Score=57.18 Aligned_cols=110 Identities=25% Similarity=0.311 Sum_probs=60.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 135 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 135 (547)
..+++.+++|+|||..+... ...+.. .+..++++ +..+|...+...+. ..
T Consensus 100 ~~~~l~G~~GtGKThLa~ai-a~~l~~------~g~~v~~i-t~~~l~~~l~~~~~----~~------------------ 149 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAI-CNELLL------RGKSVLII-TVADIMSAMKDTFS----NS------------------ 149 (244)
T ss_pred ceEEEECCCCCCHHHHHHHH-HHHHHh------cCCeEEEE-EHHHHHHHHHHHHh----hc------------------
Confidence 46899999999999754432 223322 14466655 44455544433321 00
Q ss_pred HhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHH-HHHHHHHh-CCCCceEEEEeccCcHHHHH
Q 008956 136 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEP-QIRKIVKE-VPARRQTLMYTATWPREVRK 211 (547)
Q Consensus 136 ~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~-~i~~i~~~-l~~~~q~l~~SAT~~~~~~~ 211 (547)
+ .+.+.+++. +.++++|||||++......+.. .+..|+.. ......+++.|.--+.++.+
T Consensus 150 ------~---~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 150 ------E---TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred ------c---ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 0 112222221 3467899999999765444443 34445554 33456788877775555443
No 216
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.98 E-value=0.0024 Score=62.54 Aligned_cols=64 Identities=22% Similarity=0.457 Sum_probs=52.7
Q ss_pred HHHHHhhcCCCcEEEEccccccCCCCCCc--------cEEEEcCCCCChhhhHhhhccccCCCCce-EEEEEe
Q 008956 303 YVLNQFRAGRSPVLVATDVAARGLDIKDI--------RVVVNYDFPTGVEDYVHRIGRTGRAGATG-VAYTFF 366 (547)
Q Consensus 303 ~~l~~F~~g~~~ILVaT~~~~~GiDip~v--------~~VI~~d~p~s~~~yiQriGR~gR~g~~g-~~~~l~ 366 (547)
...+.|.+|+.+|+|.+++++.||.+..- .+-|...+||+....+|..||++|.++.. ..|.++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEe
Confidence 34678999999999999999999999742 35678899999999999999999999754 334443
No 217
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.016 Score=59.53 Aligned_cols=127 Identities=18% Similarity=0.254 Sum_probs=68.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC-c-H-HHHHHHHHHHHHhccCCceEEEEecCCCCChh
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP-T-R-ELATQIQDEAVKFGKSSRISCTCLYGGAPKGP 132 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P-t-r-~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~ 132 (547)
+.+++++|||+|||+.....+...... +.++.++.. + | .-++|+...... .+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~-------GkkVglI~aDt~RiaAvEQLk~yae~----lg-------------- 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-------KKTVGFITTDHSRIGTVQQLQDYVKT----IG-------------- 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc-------CCcEEEEecCCcchHHHHHHHHHhhh----cC--------------
Confidence 457788999999998655444333221 335544443 3 2 344454433222 11
Q ss_pred hHHHhhCCCcEE-EECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC-cHHHHHHHHHhCCCCceEEEEeccCc-HHH
Q 008956 133 QLKDIDRGVDIV-VATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPARRQTLMYTATWP-REV 209 (547)
Q Consensus 133 ~~~~~~~~~~Il-V~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l~~~~q~l~~SAT~~-~~~ 209 (547)
+.++ +.+|..|.+.+.... ...++++|+||-+=+..... ....+..++....+..-+|.+|||.. ...
T Consensus 297 --------ipv~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 297 --------FEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred --------CcEEecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 2222 346677766554211 11257899999997754321 23334444444444445677898755 444
Q ss_pred HHHHHHh
Q 008956 210 RKIAADL 216 (547)
Q Consensus 210 ~~~~~~~ 216 (547)
.+.+..|
T Consensus 368 ~~i~~~F 374 (436)
T PRK11889 368 IEIITNF 374 (436)
T ss_pred HHHHHHh
Confidence 5666555
No 218
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.92 E-value=0.026 Score=59.48 Aligned_cols=127 Identities=20% Similarity=0.174 Sum_probs=64.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHh-hhccCCCCCCCEEEEE-cCc-HH-HHHHHHHHHHHhccCCceEEEEecCCCCC
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHL-KRCRNDPRLGPTVLVL-SPT-RE-LATQIQDEAVKFGKSSRISCTCLYGGAPK 130 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l-~~~~~~~~~~~~vLil-~Pt-r~-L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~ 130 (547)
++.+++++|||+|||++....+.... .. .+.++.+| +.+ +. ..+| +..+....++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~------~g~~V~li~~D~~r~~a~eq----L~~~a~~~~vp~--------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY------GKKKVALITLDTYRIGAVEQ----LKTYAKIMGIPV--------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCccHHHHHHH----HHHHHHHhCCce---------
Confidence 45678889999999986554333332 11 12345444 333 21 2233 333322222211
Q ss_pred hhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccC-CcHHHHHHHHHh-CCCCceEEEEeccCcHH
Q 008956 131 GPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKE-VPARRQTLMYTATWPRE 208 (547)
Q Consensus 131 ~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~-g~~~~i~~i~~~-l~~~~q~l~~SAT~~~~ 208 (547)
..+.++..+...+.. +.++++||||.+-+.-.. .....+..++.. ..+....++++||....
T Consensus 282 ------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 282 ------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred ------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 223344555554442 336799999999753221 122345555552 22335578889987643
Q ss_pred -HHHHHHHh
Q 008956 209 -VRKIAADL 216 (547)
Q Consensus 209 -~~~~~~~~ 216 (547)
+.+++..+
T Consensus 346 ~l~~~~~~f 354 (424)
T PRK05703 346 DLKDIYKHF 354 (424)
T ss_pred HHHHHHHHh
Confidence 44444444
No 219
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0072 Score=62.13 Aligned_cols=167 Identities=17% Similarity=0.172 Sum_probs=79.7
Q ss_pred CCccCCCCHHHHHHHHHC---C--CCCC---cHHHHHHHHH----H-------hCCCcEEEEcCCCchHHHHHHHHHHHH
Q 008956 19 SFDATGFPPELLREVHNA---G--FSSP---TPIQAQSWPI----A-------LQSRDIVAIAKTGSGKTLGYLLPGFIH 79 (547)
Q Consensus 19 ~f~~~~l~~~l~~~l~~~---g--~~~~---~~~Q~~~i~~----i-------l~g~~vlv~a~TGsGKT~~~l~~~l~~ 79 (547)
.+...++++.+.+.|... . ...+ ..+....+.. + .++..+++++|||+|||+.....+...
T Consensus 82 ~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 82 YLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred HHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 366778888887777542 1 1111 2333333322 1 124568889999999998655443333
Q ss_pred hhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCC
Q 008956 80 LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR 159 (547)
Q Consensus 80 l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~ 159 (547)
.... ...++.+++ +...-.--.+.++.|....++.+ ..+.++..+...+.
T Consensus 162 ~~~~-----G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~---------------------~~~~~~~~l~~~l~--- 211 (374)
T PRK14722 162 VMRF-----GASKVALLT-TDSYRIGGHEQLRIFGKILGVPV---------------------HAVKDGGDLQLALA--- 211 (374)
T ss_pred HHhc-----CCCeEEEEe-cccccccHHHHHHHHHHHcCCce---------------------EecCCcccHHHHHH---
Confidence 2221 012444443 22221111223333332222222 22334444433332
Q ss_pred cCCCCeeEEEEecccccccCC-cHHHHHHHHHhCCCCceEEEEeccCcHHH-HHHHHHh
Q 008956 160 ISLNQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPARRQTLMYTATWPREV-RKIAADL 216 (547)
Q Consensus 160 ~~l~~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l~~~~q~l~~SAT~~~~~-~~~~~~~ 216 (547)
.+.+.++|+||++-+.-... ....+..+.....+...+|.+|||...+. .+.+..|
T Consensus 212 -~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 212 -ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred -HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 23456899999997542111 12233333222223345788999975544 3444444
No 220
>PRK06921 hypothetical protein; Provisional
Probab=96.88 E-value=0.011 Score=58.40 Aligned_cols=46 Identities=26% Similarity=0.205 Sum_probs=26.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 106 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~ 106 (547)
.+..+++.+++|+|||..+.. +...+... .+..++++.. .++..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~a-ia~~l~~~-----~g~~v~y~~~-~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTA-AANELMRK-----KGVPVLYFPF-VEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHH-HHHHHhhh-----cCceEEEEEH-HHHHHHH
Confidence 356799999999999964332 22333221 0345666553 4555554
No 221
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.87 E-value=0.0024 Score=59.88 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=35.9
Q ss_pred CCeeEEEEecccccccC-CcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh
Q 008956 163 NQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~ 216 (547)
.++++|+||-+-+.... .....+..++....+..-.+.+|||...+....+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 45788999999764321 1345666777777677778899999876665554444
No 222
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.80 E-value=0.0096 Score=53.41 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=23.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
+++.+++|+|||..+...+..... .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-------cCCEEEEEECCcch
Confidence 678999999999755433333222 14577777665443
No 223
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.80 E-value=0.0042 Score=64.30 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=43.3
Q ss_pred CCcHHHHHHHHHH------hCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHH
Q 008956 40 SPTPIQAQSWPIA------LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 106 (547)
Q Consensus 40 ~~~~~Q~~~i~~i------l~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~ 106 (547)
+|++-|++++..+ .++..+.+.++-|+|||+. +-++...... .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~-----~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS-----RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc-----ccceEEEecchHHHHHhc
Confidence 4678899998888 6678899999999999963 3333333221 245899999996555554
No 224
>PRK08116 hypothetical protein; Validated
Probab=96.78 E-value=0.013 Score=57.94 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=58.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 136 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 136 (547)
.+++.+++|+|||..+.. +...+... +..++++ +..+|..++...+.....
T Consensus 116 gl~l~G~~GtGKThLa~a-ia~~l~~~------~~~v~~~-~~~~ll~~i~~~~~~~~~--------------------- 166 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAAC-IANELIEK------GVPVIFV-NFPQLLNRIKSTYKSSGK--------------------- 166 (268)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHHc------CCeEEEE-EHHHHHHHHHHHHhcccc---------------------
Confidence 489999999999975443 33333331 3355544 445666655544321000
Q ss_pred hhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc--cccCCcHHHHHHHHHh-CCCCceEEEEeccCcHHHHH
Q 008956 137 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR--MLDMGFEPQIRKIVKE-VPARRQTLMYTATWPREVRK 211 (547)
Q Consensus 137 ~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~--ll~~g~~~~i~~i~~~-l~~~~q~l~~SAT~~~~~~~ 211 (547)
.+...+.+. +.+.++|||||++. ..++ ....+..|++. ......+|+.|...+.++..
T Consensus 167 ---------~~~~~~~~~-------l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 167 ---------EDENEIIRS-------LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred ---------ccHHHHHHH-------hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 001111121 34567899999964 2222 23344455554 33456688888777666543
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.68 E-value=0.029 Score=57.02 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=59.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ 133 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~ 133 (547)
.+.++++.++||+|||..+...+-..+.. +..|+++ +..+|..++.... +... ..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~-t~~~l~~~l~~~~--~~~~-----------~~---- 236 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYR-TADELIEILREIR--FNND-----------KE---- 236 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEE-EHHHHHHHHHHHH--hccc-----------hh----
Confidence 35789999999999997443322222222 4455554 4456766554321 1000 00
Q ss_pred HHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCc-HHHHHHHHHhC-CCCceEEEEeccCcHHHH
Q 008956 134 LKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF-EPQIRKIVKEV-PARRQTLMYTATWPREVR 210 (547)
Q Consensus 134 ~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~-~~~i~~i~~~l-~~~~q~l~~SAT~~~~~~ 210 (547)
....+ -.+.++++||||+.+......+ ...+..+++.. .....+|+.|.-.+.++.
T Consensus 237 -----------------~~~~~----~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 237 -----------------LEEVY----DLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELL 294 (329)
T ss_pred -----------------HHHHH----HHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 00000 1134678999999986543333 33455555543 334567777766565553
No 226
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.66 E-value=0.015 Score=53.85 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=34.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
+++.+++|+|||..++--+...+.. +.+++|++. .+-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-------g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-------GEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-------CCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 6889999999998665544444433 557888875 466777777776664
No 227
>PRK08727 hypothetical protein; Validated
Probab=96.54 E-value=0.018 Score=55.76 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=26.9
Q ss_pred CCeeEEEEecccccccCC-cHHHHHHHHHhCCC-CceEEEEeccCcHHH
Q 008956 163 NQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPA-RRQTLMYTATWPREV 209 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l~~-~~q~l~~SAT~~~~~ 209 (547)
.++++|||||+|.+.... ....+..+++.+.. ..++|+.|..+|.+.
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 345789999999876432 22334445544432 345666565555544
No 228
>PHA02533 17 large terminase protein; Provisional
Probab=96.50 E-value=0.026 Score=61.13 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=84.1
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 118 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~ 118 (547)
..|.|+|++.+..+..++-.++..+=-.|||.+....++..... . .+..+++++|+..-+..+.+.++.......
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~---~--~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF---N--KDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh---C--CCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 36889999999887666666777788899998766444333322 1 145999999999988888887775443211
Q ss_pred e--EEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCC--
Q 008956 119 I--SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA-- 194 (547)
Q Consensus 119 i--~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~-- 194 (547)
. ...... .. ...-.+.++..|.+.|.+. ....-.+++++|+||+|.+.+ +...+..+...+..
T Consensus 133 ~l~~~~i~~-~~---~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 133 DFLQPGIVE-WN---KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred HHhhcceee-cC---ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 0 000000 00 0001123455565544321 111223567899999997643 23333334333332
Q ss_pred CceEEEEeccC
Q 008956 195 RRQTLMYTATW 205 (547)
Q Consensus 195 ~~q~l~~SAT~ 205 (547)
..+++.+|++.
T Consensus 200 ~~r~iiiSTp~ 210 (534)
T PHA02533 200 SSKIIITSTPN 210 (534)
T ss_pred CceEEEEECCC
Confidence 23455555553
No 229
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.48 E-value=0.06 Score=55.24 Aligned_cols=131 Identities=18% Similarity=0.211 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 134 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 134 (547)
++.+.+++|||.|||++..-.++.+..... ..+..||-..|--... .++++.|+.-.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~----~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp-------------- 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK----KKKVAIITTDTYRIGA--VEQLKTYADIMGVP-------------- 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc----CcceEEEEeccchhhH--HHHHHHHHHHhCCc--------------
Confidence 667888999999999875544444331111 1234566555532211 23344443322222
Q ss_pred HHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccc-cCCcHHHHHHHHHhCCCCceEEEEeccCcHHH-HHH
Q 008956 135 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML-DMGFEPQIRKIVKEVPARRQTLMYTATWPREV-RKI 212 (547)
Q Consensus 135 ~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll-~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~-~~~ 212 (547)
-.++-+|.-|...+. .+.++++|.||=+-+-- |.-...++..++....+..-.|.+|||....+ .+.
T Consensus 263 -------~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 263 -------LEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred -------eEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 255566666666554 35677899999887532 11134455555555555566788999976443 445
Q ss_pred HHHh
Q 008956 213 AADL 216 (547)
Q Consensus 213 ~~~~ 216 (547)
+..|
T Consensus 332 ~~~f 335 (407)
T COG1419 332 IKQF 335 (407)
T ss_pred HHHh
Confidence 5544
No 230
>PRK12377 putative replication protein; Provisional
Probab=96.46 E-value=0.019 Score=55.85 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=57.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 135 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 135 (547)
..+++.+++|+|||..+... ...+.. .+..+++ ++..+|..++...+.. . .
T Consensus 102 ~~l~l~G~~GtGKThLa~AI-a~~l~~------~g~~v~~-i~~~~l~~~l~~~~~~---~-----------~------- 152 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAI-GNRLLA------KGRSVIV-VTVPDVMSRLHESYDN---G-----------Q------- 152 (248)
T ss_pred CeEEEECCCCCCHHHHHHHH-HHHHHH------cCCCeEE-EEHHHHHHHHHHHHhc---c-----------c-------
Confidence 57899999999999754332 223322 1334444 4555777766554311 0 0
Q ss_pred HhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCc-HHHHHHHHHhC-CCCceEEEEeccCcHHH
Q 008956 136 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF-EPQIRKIVKEV-PARRQTLMYTATWPREV 209 (547)
Q Consensus 136 ~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~-~~~i~~i~~~l-~~~~q~l~~SAT~~~~~ 209 (547)
+...+++ .+.++++|||||++......+ ...+..|++.. .....++++|.--..+.
T Consensus 153 -----------~~~~~l~-------~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l 210 (248)
T PRK12377 153 -----------SGEKFLQ-------ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAM 210 (248)
T ss_pred -----------hHHHHHH-------HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHH
Confidence 0011111 145788999999964432222 23444455443 33466777766544443
No 231
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.46 E-value=0.0088 Score=57.88 Aligned_cols=87 Identities=29% Similarity=0.365 Sum_probs=64.1
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCC-CChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 88 RLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGA-PKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 88 ~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~-~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
...|.+||||.+-.-|..+...++.+... ...++-++.-- ...++...+.. ..+|.|+||+||..+++.+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 34689999999987788888887776421 12222233222 33455555654 58999999999999999999999999
Q ss_pred eEEEEecccc
Q 008956 166 SYLVLDEADR 175 (547)
Q Consensus 166 ~~lVlDEaH~ 175 (547)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998773
No 232
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.46 E-value=0.011 Score=67.07 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=72.4
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 118 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~ 118 (547)
..|++-|++++... ...++|.|..|||||.+...-+...+..... ....+|+|+-|+..|..+.+.+.++....
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v---~p~~IL~lTFTnkAA~em~~Rl~~~~~~~- 76 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENA---SPHSIMAVTFTNKAAAEMRHRIGALLGTS- 76 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---CHHHeEeeeccHHHHHHHHHHHHHHhccc-
Confidence 46899999998643 4679999999999998765555444432211 24589999999999999999988865321
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHH-HHhcCC--cCCCCeeEEEEecccc
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLND-ILEMRR--ISLNQVSYLVLDEADR 175 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~-~l~~~~--~~l~~~~~lVlDEaH~ 175 (547)
...+.|+|...|.. +|.... ..+ .-.+-|+|+.+.
T Consensus 77 ---------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ---------------------ARGMWIGTFHGLAHRLLRAHHLDAGL-PQDFQILDSDDQ 114 (715)
T ss_pred ---------------------ccCcEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 02577888887754 333211 111 123457787664
No 233
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.047 Score=60.99 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=72.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc-CcHH--HHHHHHHHHHHhccCCceEEEEecCCCCChh
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS-PTRE--LATQIQDEAVKFGKSSRISCTCLYGGAPKGP 132 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~-Ptr~--L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~ 132 (547)
+-+++++|||+|||+++...+....... ...++.++. .+-- -++|+ +.+....++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-----G~kkV~lit~Dt~RigA~eQL----~~~a~~~gvpv----------- 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVARE-----GADQLALLTTDSFRIGALEQL----RIYGRILGVPV----------- 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHc-----CCCeEEEecCcccchHHHHHH----HHHHHhCCCCc-----------
Confidence 3467789999999986554433322210 012444443 3321 23333 33332222211
Q ss_pred hHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccC-CcHHHHHHHHHhCCCCceEEEEeccCcHH-HH
Q 008956 133 QLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPRE-VR 210 (547)
Q Consensus 133 ~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~~~~q~l~~SAT~~~~-~~ 210 (547)
.++.+|..+.+.+.. +.+.++|+||=+=+.-.. .....+..+.....+...+|.++||...+ +.
T Consensus 246 ----------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 ----------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred ----------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 233466666666652 345689999999865422 12333444444444556788889987543 34
Q ss_pred HHHHHhcC----CCeEEEeCcccc
Q 008956 211 KIAADLLV----NPVQVNIGNVDE 230 (547)
Q Consensus 211 ~~~~~~l~----~~~~i~i~~~~~ 230 (547)
+++..|-. +...+.+...|+
T Consensus 312 ~i~~~f~~~~~~~i~glIlTKLDE 335 (767)
T PRK14723 312 EVVHAYRHGAGEDVDGCIITKLDE 335 (767)
T ss_pred HHHHHHhhcccCCCCEEEEeccCC
Confidence 45555532 344455555554
No 234
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.45 E-value=0.01 Score=67.28 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
..|+|-|++++... ...++|.|..|||||.+...-+...+..... ....+|+|+-|+..|.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v---~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENA---SPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---ChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 36899999998643 4679999999999998765555444432211 235899999999999999999888653
No 235
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.42 E-value=0.024 Score=55.63 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=21.2
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhCC
Q 008956 26 PPELLREVHNAGFSSPTPIQAQSWPIALQS 55 (547)
Q Consensus 26 ~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g 55 (547)
--.+++.|+..+|.-+---|...-.++.++
T Consensus 5 e~~lvdslk~l~~qg~~~k~~~lsral~ag 34 (465)
T KOG3973|consen 5 ELYLVDSLKALSFQGHCQKQENLSRALMAG 34 (465)
T ss_pred HHHHHHHHHHhccCCcccchhhHHHHHHcC
Confidence 346778888888887777776666666654
No 236
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.36 E-value=0.024 Score=59.29 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=27.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHH
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l 73 (547)
-+-......+..+..++++++.+++|+|||..+.
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 4455666677788889999999999999997654
No 237
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.32 E-value=0.013 Score=57.37 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=33.0
Q ss_pred cCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCc
Q 008956 160 ISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWP 206 (547)
Q Consensus 160 ~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~ 206 (547)
.....+++|||||||.|... -...+++.++..+....+++.+.-+.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChh
Confidence 44567899999999988654 34566777777777777777766543
No 238
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.29 E-value=0.035 Score=61.41 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCC--cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 25 FPPELLREVHNAGFSSPTPIQAQSWPIALQSR--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 25 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~--~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
.++..-..+.....+....-|.+.+..+++.+ -+++.|.=|=|||.+.-+.+........ ...++|.+|+.+-
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-----~~~iiVTAP~~~n 273 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-----SVRIIVTAPTPAN 273 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-----CceEEEeCCCHHH
Confidence 33333344555555666667777777777764 4677799999999877665533222210 2489999999998
Q ss_pred HHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcH
Q 008956 103 ATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 182 (547)
Q Consensus 103 ~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~ 182 (547)
++.+.+.+.+-....+++..+..... ........+...|=+.+|.... ..-++||||||=-+ ..
T Consensus 274 v~~Lf~fa~~~l~~lg~~~~v~~d~~--g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----pl 337 (758)
T COG1444 274 VQTLFEFAGKGLEFLGYKRKVAPDAL--GEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PL 337 (758)
T ss_pred HHHHHHHHHHhHHHhCCccccccccc--cceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----Ch
Confidence 88888777665444333221111100 0000000112234445554332 11678999999865 46
Q ss_pred HHHHHHHHhCCCCceEEEEeccCc
Q 008956 183 PQIRKIVKEVPARRQTLMYTATWP 206 (547)
Q Consensus 183 ~~i~~i~~~l~~~~q~l~~SAT~~ 206 (547)
+.+.+++..++ .++||.|+.
T Consensus 338 plL~~l~~~~~----rv~~sTTIh 357 (758)
T COG1444 338 PLLHKLLRRFP----RVLFSTTIH 357 (758)
T ss_pred HHHHHHHhhcC----ceEEEeeec
Confidence 77777776654 578888864
No 239
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.23 E-value=0.04 Score=55.62 Aligned_cols=144 Identities=16% Similarity=0.189 Sum_probs=73.6
Q ss_pred CCCCcHHHHHHHHHHhC----CC---cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 38 FSSPTPIQAQSWPIALQ----SR---DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 38 ~~~~~~~Q~~~i~~il~----g~---~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
++.++|||..++..+.+ ++ -+|+.+|.|+||+..+...+ ..+.. .. +.... .|+.. ..+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA-~~LlC-~~-~~~~~----~c~~c-------~~~ 67 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALA-EHVLA-SG-PDPAA----AQRTR-------QLI 67 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH-HHHhC-CC-CCCCC----cchHH-------HHH
Confidence 46789999999987763 33 47889999999997655432 22222 11 11000 12211 111
Q ss_pred HHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHH
Q 008956 111 VKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK 190 (547)
Q Consensus 111 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~ 190 (547)
.-+.+..+.+.......... .....|.|-..-.+.+.+..... ....+++||||||.|... -.+.+.++++
T Consensus 68 -~~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p~-~g~~kV~iI~~ae~m~~~-AaNaLLKtLE 138 (319)
T PRK08769 68 -AAGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTPQ-YGIAQVVIVDPADAINRA-ACNALLKTLE 138 (319)
T ss_pred -hcCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCcc-cCCcEEEEeccHhhhCHH-HHHHHHHHhh
Confidence 11222333332111110000 00012333222233333332222 246889999999998543 3556667788
Q ss_pred hCCCCceEEEEecc
Q 008956 191 EVPARRQTLMYTAT 204 (547)
Q Consensus 191 ~l~~~~q~l~~SAT 204 (547)
.-|....+|++|..
T Consensus 139 EPp~~~~fiL~~~~ 152 (319)
T PRK08769 139 EPSPGRYLWLISAQ 152 (319)
T ss_pred CCCCCCeEEEEECC
Confidence 87777767766654
No 240
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.028 Score=57.14 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=28.2
Q ss_pred CCcHHHHHHHHHHhCCC----cEEEEcCCCchHHHHHHH
Q 008956 40 SPTPIQAQSWPIALQSR----DIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~----~vlv~a~TGsGKT~~~l~ 74 (547)
.++|||...|..+++.. -.|+.+|.|.|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 45899999999888643 478899999999976554
No 241
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.19 E-value=0.0043 Score=73.32 Aligned_cols=93 Identities=26% Similarity=0.347 Sum_probs=74.9
Q ss_pred eEEEEcCChHHHHHHHHHHhcc--cceEEEcCCCCH-----------HHHHHHHHHhhcCCCcEEEEccccccCCCCCCc
Q 008956 265 KIIVFCSTKKMCDQLARNLTRQ--FGAAAIHGDKSQ-----------SERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 331 (547)
Q Consensus 265 k~IVF~~s~~~~~~l~~~L~~~--~~~~~ihg~~~~-----------~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v 331 (547)
-.|+||+....+..+.+.+... ..+..+.|.+.+ ..+.+++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4588999888888888877653 222223332221 236678899999999999999999999999999
Q ss_pred cEEEEcCCCCChhhhHhhhccccCCC
Q 008956 332 RVVVNYDFPTGVEDYVHRIGRTGRAG 357 (547)
Q Consensus 332 ~~VI~~d~p~s~~~yiQriGR~gR~g 357 (547)
+.|+.++.|.....|+|..||+-...
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997764
No 242
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.19 E-value=0.053 Score=57.19 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=33.5
Q ss_pred eeEEEEeccccccc-CCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh
Q 008956 165 VSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 165 ~~~lVlDEaH~ll~-~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~ 216 (547)
.++||||.+-++.. ...-.++..+.....+..-++.++||...+..+.+..+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 37899999965421 11334455666666666678888888776665666554
No 243
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.18 E-value=0.042 Score=65.94 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHH
Q 008956 40 SPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 106 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~ 106 (547)
.+++-|++++..++.. +-++|.+..|+|||++.- .++..+..... ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~e--~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFR-AVMSAVNMLPE--SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHH-HHHHHHHHHhh--ccCceEEEEechHHHHHHH
Confidence 7899999999999965 668889999999997532 12222211111 1245789999997666554
No 244
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.18 E-value=0.027 Score=54.52 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=25.2
Q ss_pred eeEEEEecccccccC-CcHHHHHHHHHhCCC-C-ceEEEEeccCcHH
Q 008956 165 VSYLVLDEADRMLDM-GFEPQIRKIVKEVPA-R-RQTLMYTATWPRE 208 (547)
Q Consensus 165 ~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~~-~-~q~l~~SAT~~~~ 208 (547)
+++|||||+|.+... .+...+..+++.+.. . .++++.|..+|..
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 468999999987532 234455555555432 2 3555555444443
No 245
>PRK09183 transposase/IS protein; Provisional
Probab=96.18 E-value=0.039 Score=54.21 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=29.4
Q ss_pred HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHH
Q 008956 52 ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 106 (547)
Q Consensus 52 il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~ 106 (547)
+.++.++++.+|+|+|||..+...+...... +..++++. ..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-------G~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA-------GIKVRFTT-AADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEe-HHHHHHHH
Confidence 4567889999999999997544333222222 44666654 34565544
No 246
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.16 E-value=0.096 Score=51.59 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=69.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC-c--HHHHHHHHHHHHHhccCCceEEEEecCCCCChh
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP-T--RELATQIQDEAVKFGKSSRISCTCLYGGAPKGP 132 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P-t--r~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~ 132 (547)
..+++.+++|+|||..+...+...... +.++.++.. + ...+.||...+... ++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~-------~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~------------- 131 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK-------KKTVGFITTDHSRIGTVQQLQDYVKTI----GF------------- 131 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEecCCCCHHHHHHHHHHhhhc----Cc-------------
Confidence 457788999999998665443332211 234444433 2 24566665443322 12
Q ss_pred hHHHhhCCCcEEE-ECcHHHHHHHhcCCcCCCCeeEEEEecccccccC-CcHHHHHHHHHhCCCCceEEEEeccCc-HHH
Q 008956 133 QLKDIDRGVDIVV-ATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWP-REV 209 (547)
Q Consensus 133 ~~~~~~~~~~IlV-~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~~~~q~l~~SAT~~-~~~ 209 (547)
.+.. .++..|.+.+..- .....+++||||.+=+.-.. .....+.+++....+..-++.+|||.. .+.
T Consensus 132 ---------~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 132 ---------EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred ---------eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 2222 3455555444321 11245789999999875321 123344455555544455778999864 455
Q ss_pred HHHHHHh
Q 008956 210 RKIAADL 216 (547)
Q Consensus 210 ~~~~~~~ 216 (547)
.+.++.|
T Consensus 202 ~~~~~~f 208 (270)
T PRK06731 202 IEIITNF 208 (270)
T ss_pred HHHHHHh
Confidence 5666665
No 247
>PRK06893 DNA replication initiation factor; Validated
Probab=96.16 E-value=0.012 Score=56.75 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=28.2
Q ss_pred CCeeEEEEecccccccC-CcHHHHHHHHHhCCC-CceEEEEeccCcH
Q 008956 163 NQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPA-RRQTLMYTATWPR 207 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~~-~~q~l~~SAT~~~ 207 (547)
.++++|||||+|.+... .+...+..+++.+.. ..+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 35679999999987532 234455565655543 3456677776544
No 248
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.14 E-value=0.011 Score=57.81 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=34.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 112 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~ 112 (547)
++.++++.+++|+|||..+...+...+ . .+ .-++++++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~------~g-~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K------AG-ISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H------cC-CeEEEEEHHHHHHHHHHHHhc
Confidence 678999999999999975444333333 2 13 445556667898887776644
No 249
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.10 E-value=0.037 Score=52.96 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCchHHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~ 74 (547)
....+++.+++|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356799999999999975543
No 250
>PRK05642 DNA replication initiation factor; Validated
Probab=96.06 E-value=0.031 Score=54.04 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=26.9
Q ss_pred CeeEEEEecccccccC-CcHHHHHHHHHhCCCCceEEEEeccCc
Q 008956 164 QVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWP 206 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~~~~q~l~~SAT~~ 206 (547)
++++||||++|.+... .+...+..+++.+......++++++.+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 4578999999976433 234557777776655434455555543
No 251
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.05 E-value=0.027 Score=54.63 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=37.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
+..+++.+++|+|||+.++-.++..+.. +.++++++- .+-..|+.+.+..+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~-------ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-------GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-------CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 4678889999999998666555555433 558888884 466777777777655
No 252
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.05 E-value=0.042 Score=60.89 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=25.7
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
..++++||||+|.|.... .+.+.++++..+....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 467899999999876543 344555666666555555544
No 253
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.05 E-value=0.017 Score=62.10 Aligned_cols=148 Identities=16% Similarity=0.102 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhC-----C----CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 43 PIQAQSWPIALQ-----S----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 43 ~~Q~~~i~~il~-----g----~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
|+|+-++..++- + +.+++.-+=+-|||......++..+... ...+..+++++++++-|..+++.+..+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~---g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD---GEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC---CccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 688888877762 2 3577778899999975544444444321 233678999999999999999998887
Q ss_pred ccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhc--CCcCCCCeeEEEEecccccccCCcHHHHHHHHHh
Q 008956 114 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM--RRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE 191 (547)
Q Consensus 114 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~--~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~ 191 (547)
........... ....... ....|.....+.+...+.. ....=.+..++|+||+|.+.+......+..-+..
T Consensus 78 i~~~~~l~~~~------~~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~ 150 (477)
T PF03354_consen 78 IEASPELRKRK------KPKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGA 150 (477)
T ss_pred HHhChhhccch------hhhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhcc
Confidence 65422111000 0000000 0112322222222222221 1222335789999999988654333334333333
Q ss_pred CCCCceEEEE
Q 008956 192 VPARRQTLMY 201 (547)
Q Consensus 192 l~~~~q~l~~ 201 (547)
.+ +.+++.+
T Consensus 151 r~-~pl~~~I 159 (477)
T PF03354_consen 151 RP-NPLIIII 159 (477)
T ss_pred CC-CceEEEE
Confidence 33 3444444
No 254
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.04 E-value=0.052 Score=48.87 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=43.5
Q ss_pred CCCCeeEEEEecccccccCCc--HHHHHHHHHhCCCCceEEEEeccCcHHHHHHHH
Q 008956 161 SLNQVSYLVLDEADRMLDMGF--EPQIRKIVKEVPARRQTLMYTATWPREVRKIAA 214 (547)
Q Consensus 161 ~l~~~~~lVlDEaH~ll~~g~--~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~ 214 (547)
....+++|||||+=..++.++ ...+..+++..|...-+|++.-.+|+++.+++.
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 356789999999998877774 567788888888888888888888888776653
No 255
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.04 E-value=0.0042 Score=56.82 Aligned_cols=124 Identities=21% Similarity=0.202 Sum_probs=53.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhh
Q 008956 59 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 138 (547)
Q Consensus 59 lv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 138 (547)
++.|+-|-|||.+.-+.+...+.. ....++|.+|+.+-++.+++.+.+-....+++..... ..........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------EEEE-SS--S-HHHHHCC----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccc---cccccccccc
Confidence 578999999997544433222222 1247999999998888877766554433333220000 0000000111
Q ss_pred CCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCc
Q 008956 139 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWP 206 (547)
Q Consensus 139 ~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~ 206 (547)
....|-+..|+.+... ....++||||||=.+ -.+.+..++...+ .++||.|..
T Consensus 72 ~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred ccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHhhCC----EEEEEeecc
Confidence 2456777788766331 224588999999965 4566666654443 566777753
No 256
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.22 Score=53.38 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=76.3
Q ss_pred CCccCCCCHHHHHHHHHC--C---CCCCcHHHHHHHHH---------HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhcc
Q 008956 19 SFDATGFPPELLREVHNA--G---FSSPTPIQAQSWPI---------ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCR 84 (547)
Q Consensus 19 ~f~~~~l~~~l~~~l~~~--g---~~~~~~~Q~~~i~~---------il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~ 84 (547)
.+...++++.+.+.|... . ....+.+=...+.. +..++.++++++||+|||+.+...+.......
T Consensus 300 ~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~- 378 (559)
T PRK12727 300 LMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQH- 378 (559)
T ss_pred HHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhc-
Confidence 456677888887777543 1 11111111111111 22356678889999999986543332222210
Q ss_pred CCCCCCCEEEEEc-Cc-HHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCC
Q 008956 85 NDPRLGPTVLVLS-PT-RELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISL 162 (547)
Q Consensus 85 ~~~~~~~~vLil~-Pt-r~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l 162 (547)
.+.++.++. .+ +.-+. +.++.+....++.+. .+.++..|...+.. +
T Consensus 379 ----~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~---------------------~a~d~~~L~~aL~~----l 426 (559)
T PRK12727 379 ----APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVH---------------------EADSAESLLDLLER----L 426 (559)
T ss_pred ----CCCceEEEecccccccHH---HHHHHhhcccCceeE---------------------ecCcHHHHHHHHHH----h
Confidence 122444443 22 32221 223333322222211 11233445555542 3
Q ss_pred CCeeEEEEecccccccCC-cHHHHHHHHHhCCCCceEEEEeccCcH-HHHHHHHHh
Q 008956 163 NQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPARRQTLMYTATWPR-EVRKIAADL 216 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l~~~~q~l~~SAT~~~-~~~~~~~~~ 216 (547)
.++++||||.+-+.-... ...++..+.... ....+|+++++... ...+.++.+
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHHHHHHHH
Confidence 467899999998642111 112233332222 33457778888653 444444443
No 257
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.02 E-value=0.064 Score=48.67 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=31.2
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCc
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWP 206 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~ 206 (547)
..++++||||||.|... ....+.+.++.-+....++++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 46899999999987544 45677788888887777777666543
No 258
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.00 E-value=0.03 Score=62.60 Aligned_cols=72 Identities=22% Similarity=0.200 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
..+++-|++++... ..+++|.|..|||||.+.+.-+...+..... .+..+|+|+.|+..|..+.+.+.....
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~---~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQA---QPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC---CHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 57999999998543 3568999999999998765554444433222 245899999999999999988876544
No 259
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.99 E-value=0.083 Score=64.35 Aligned_cols=65 Identities=23% Similarity=0.224 Sum_probs=44.8
Q ss_pred CCCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHH
Q 008956 39 SSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 106 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~ 106 (547)
..+++.|++++..++.. +-++|.+..|+|||++. -.++..+..... ..+..++.++||-.-+.++
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~--~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPE--SERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhc--ccCceEEEECCcHHHHHHH
Confidence 47899999999999985 45788899999999753 233333322111 1245789999997666544
No 260
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.98 E-value=0.067 Score=54.19 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=27.3
Q ss_pred CeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEec
Q 008956 164 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 203 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SA 203 (547)
..++|||||+|.+........+..+++..+...++++.+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4678999999987333244566677777776776666543
No 261
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.96 E-value=0.016 Score=63.23 Aligned_cols=126 Identities=19% Similarity=0.178 Sum_probs=74.5
Q ss_pred CCCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHH-HHHHhcc
Q 008956 39 SSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQD-EAVKFGK 115 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~-~~~~~~~ 115 (547)
...+|||.+.+.++-.. +.|++..++=+|||.+.+..+...+.. . ...+|++.||.+++..+.+ .+.....
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~---~---P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ---D---PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe---C---CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 37789999999888765 578888899999998655443333333 1 3479999999999999874 3444433
Q ss_pred CCceEEEEecC---CCCChh-hHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 116 SSRISCTCLYG---GAPKGP-QLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 116 ~~~i~~~~~~g---~~~~~~-~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
.+..--..+.. ...... ..+.+. +..+.++....-. .+.-..+.+|++||.|.+.
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPS------NLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred hCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCCc------ccccCCcCEEEEechhhcc
Confidence 22111011111 111111 112222 4445554432211 2334467899999999974
No 262
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.93 E-value=0.068 Score=51.56 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=33.9
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 53 LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
..+.-+++.+++|+|||+.++..+...+.. +.++++++.. +-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-------g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN-------GYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 346678889999999997654433333322 4578888843 44455555555443
No 263
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.93 E-value=1.4 Score=49.17 Aligned_cols=73 Identities=16% Similarity=0.343 Sum_probs=52.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCee
Q 008956 91 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQVS 166 (547)
Q Consensus 91 ~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 166 (547)
..+||.|+|+.-+.++++.+.+. ++.+.+++++....+. +..+.. ..+||||| +.+. ..+++.+++
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~a-rGIDip~V~ 315 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAA-RGLDVERIS 315 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHh-cCCCcccCC
Confidence 47899999999999988888764 4677788887665433 344444 48999999 4343 368888999
Q ss_pred EEEEecc
Q 008956 167 YLVLDEA 173 (547)
Q Consensus 167 ~lVlDEa 173 (547)
+||.-+.
T Consensus 316 ~VI~~d~ 322 (629)
T PRK11634 316 LVVNYDI 322 (629)
T ss_pred EEEEeCC
Confidence 9886433
No 264
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.92 E-value=0.048 Score=62.02 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=27.1
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
..++++||||+|+|... -.+.+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 57889999999988654 3345666677766666555554
No 265
>PLN03025 replication factor C subunit; Provisional
Probab=95.91 E-value=0.08 Score=53.80 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=25.1
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
...+++||||+|.|... -...+..+++..+....+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEEEe
Confidence 35789999999987543 2345556666655555555443
No 266
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.89 E-value=0.49 Score=51.36 Aligned_cols=125 Identities=21% Similarity=0.333 Sum_probs=81.3
Q ss_pred CeEEEEcCChHHHHHHHHHHhcc--------cceEEEcCCCCHHHHHHHHHHhh----cCCCcEEEEc--cccccCCCCC
Q 008956 264 SKIIVFCSTKKMCDQLARNLTRQ--------FGAAAIHGDKSQSERDYVLNQFR----AGRSPVLVAT--DVAARGLDIK 329 (547)
Q Consensus 264 ~k~IVF~~s~~~~~~l~~~L~~~--------~~~~~ihg~~~~~~R~~~l~~F~----~g~~~ILVaT--~~~~~GiDip 329 (547)
.-+++|+++.+-...+.+.+++. .....+-..-+ -+.+++.|. .|.-.||+|. .-+++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 57899999999888888877642 11112222222 233455443 4555677766 7889999998
Q ss_pred C--ccEEEEcCCCCC----hh----------------------------hhHhhhccccCCCCceEEEEEecCCChHHHH
Q 008956 330 D--IRVVVNYDFPTG----VE----------------------------DYVHRIGRTGRAGATGVAYTFFGDQDSRYAS 375 (547)
Q Consensus 330 ~--v~~VI~~d~p~s----~~----------------------------~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~ 375 (547)
+ .+.||-+++|.. ++ ..-|.||||-|--++-.++.|++.. +.+
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R---Y~~ 783 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR---YAR 783 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh---hcC
Confidence 6 577888888742 11 2348999999998888888888643 222
Q ss_pred HHHHHHHHhcccccHHHHHHHHcCCC
Q 008956 376 DLIKLLEGAKQQVPRELRDMASRGGG 401 (547)
Q Consensus 376 ~l~~~l~~~~~~v~~~l~~l~~~~~g 401 (547)
...+ .+|.|+.+......|
T Consensus 784 p~~R-------KLp~WI~~~v~s~~~ 802 (821)
T KOG1133|consen 784 PLSR-------KLPKWIRKRVHSKAG 802 (821)
T ss_pred chhh-------hccHHHHhHhccccC
Confidence 2222 788888666554433
No 267
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.87 E-value=0.042 Score=50.86 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=81.5
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChh
Q 008956 53 LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP 132 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~ 132 (547)
.....+++..++|.|||.+++--++..+.. +.+|+|+-=-+--. -+.+...+.....+.....-.+.....
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-------G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~~g~~~~~~~ 90 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGH-------GKKVGVVQFIKGAW--STGERNLLEFGGGVEFHVMGTGFTWET 90 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHC-------CCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEECCCCCcccC
Confidence 455688899999999999988877777766 66787774332110 011222221111233222111100000
Q ss_pred hHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCc--HHHHHHHHHhCCCCceEEEEeccCcHHHH
Q 008956 133 QLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF--EPQIRKIVKEVPARRQTLMYTATWPREVR 210 (547)
Q Consensus 133 ~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~--~~~i~~i~~~l~~~~q~l~~SAT~~~~~~ 210 (547)
....--+........... ..+.-..+++|||||+=..++.++ ...+..+++..|...-+|++--.+|+++.
T Consensus 91 ------~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Li 163 (191)
T PRK05986 91 ------QDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELI 163 (191)
T ss_pred ------CCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 000000000011111111 123346789999999999888885 56677888888877778887777888777
Q ss_pred HHHH
Q 008956 211 KIAA 214 (547)
Q Consensus 211 ~~~~ 214 (547)
+++.
T Consensus 164 e~AD 167 (191)
T PRK05986 164 EAAD 167 (191)
T ss_pred HhCc
Confidence 6654
No 268
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.87 E-value=0.047 Score=52.46 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=25.7
Q ss_pred CeeEEEEecccccccCCcHHHHHHHHHhCCCCce-EEEEeccCcH
Q 008956 164 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ-TLMYTATWPR 207 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q-~l~~SAT~~~ 207 (547)
..++|||||+|.+-.. ....+..+++.+..... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4568999999986432 33445555555443333 4667776543
No 269
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.025 Score=57.46 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~ 74 (547)
.++|+.+|+|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4789999999999986543
No 270
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.81 E-value=0.15 Score=55.68 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=46.5
Q ss_pred CcHHHHHHHHHHh---CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 41 PTPIQAQSWPIAL---QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 41 ~~~~Q~~~i~~il---~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
|.|.=.+-|..++ +.+-.++.+|=+.|||.+..+.+...+.. .+.+++|.+|...-+.++.+.+.+...
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3444444444443 45677888999999998655444433321 146899999999888888888776654
No 271
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.78 E-value=0.029 Score=63.72 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=71.7
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 118 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~ 118 (547)
..|+|-|.+++... ...++|.|..|||||.+...-+...+...... +.++|+++-|+.-+..+.+.+.++....
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~---P~~IL~lTFT~kAA~em~~Rl~~~~~~~- 76 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVA---PWNILAITFTNKAAREMKERVEKLLGPV- 76 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCC---HHHeeeeeccHHHHHHHHHHHHHHhccc-
Confidence 46899999999753 46799999999999987666555554332222 3489999999999999888887764320
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcC-C-CCeeEEEEeccc
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRIS-L-NQVSYLVLDEAD 174 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~-l-~~~~~lVlDEaH 174 (547)
...+.|+|...|...+.+.... + -.-.+.|+|+.+
T Consensus 77 ---------------------~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~ 113 (726)
T TIGR01073 77 ---------------------AEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTD 113 (726)
T ss_pred ---------------------cCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHH
Confidence 1257788887775433221110 0 012345677765
No 272
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.78 E-value=0.12 Score=58.16 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=18.6
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHh
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKE 191 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~ 191 (547)
..+.+|||||+|.+... ....+..++.+
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 34678999999998754 23445555554
No 273
>PRK05973 replicative DNA helicase; Provisional
Probab=95.77 E-value=0.058 Score=51.99 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=41.9
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
.++|. .+...-+..+.-++|.+++|+|||+.++--+...+.. +.+++|++-- +-..|+.+.+..+.
T Consensus 50 ~~~p~-~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-------Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 50 ATTPA-EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-------GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CCCCH-HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 44552 2233344556678889999999998666544444433 4578888653 44567777777664
No 274
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.75 E-value=0.15 Score=50.20 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=21.9
Q ss_pred HHHHHHhCCCcEEEEcCCCchHHHHHHH
Q 008956 47 QSWPIALQSRDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 47 ~~i~~il~g~~vlv~a~TGsGKT~~~l~ 74 (547)
+++..+..++.+++.+++|+|||..+..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 3445566789999999999999986553
No 275
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.75 E-value=0.098 Score=45.02 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=13.6
Q ss_pred CeeEEEEecccccccCC
Q 008956 164 QVSYLVLDEADRMLDMG 180 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g 180 (547)
...+|+|||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 35789999999987654
No 276
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.75 E-value=0.026 Score=63.28 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
.+++-|++++.. ....++|.|.+|||||.+...-+...+..... .+.++|+|+-|+.-|.++.+.+.+...
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v---~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---QARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---CHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999865 34678999999999998866555554433221 134899999999999999988877643
No 277
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.74 E-value=0.027 Score=55.16 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=38.8
Q ss_pred CCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhh
Q 008956 11 DEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKR 82 (547)
Q Consensus 11 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~ 82 (547)
..+|..+.+|+++++|+-+.+-+... ..-+||.+|||||||++ +.+++.++.+
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~------------------~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESP------------------RGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCC------------------CceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 35788888999999998887633311 12278889999999975 6666777655
No 278
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.73 E-value=0.058 Score=57.25 Aligned_cols=53 Identities=8% Similarity=0.248 Sum_probs=31.7
Q ss_pred CCeeEEEEecccccccCC-cHHHHHHHHHhC-CCCceEEEEeccCcHHHHHHHHH
Q 008956 163 NQVSYLVLDEADRMLDMG-FEPQIRKIVKEV-PARRQTLMYTATWPREVRKIAAD 215 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l-~~~~q~l~~SAT~~~~~~~~~~~ 215 (547)
.++++|+|||+|.+.... ....+..+++.+ ....++++.|.+.|.++..+...
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~r 255 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEER 255 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHH
Confidence 357899999999875432 233444454433 23566777666666665544333
No 279
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.67 E-value=0.05 Score=57.80 Aligned_cols=52 Identities=27% Similarity=0.237 Sum_probs=34.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
+.-+++.+++|+|||+..+..+...... +.+++|++- .+-..|+...+..+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-------g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA-------GGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEc-cccHHHHHHHHHHcC
Confidence 3457888999999997555443333221 458888885 456677777766654
No 280
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=95.62 E-value=0.014 Score=63.41 Aligned_cols=156 Identities=16% Similarity=0.166 Sum_probs=89.5
Q ss_pred CCCCcHHHHHHHHHHhCCC----------cEEEE--cCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHH
Q 008956 38 FSSPTPIQAQSWPIALQSR----------DIVAI--AKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQ 105 (547)
Q Consensus 38 ~~~~~~~Q~~~i~~il~g~----------~vlv~--a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q 105 (547)
-..+...|.+++-.+.+-+ ..||- |..|-|.|.+.+ |+....+ ..+++|+++-+..|--.
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi--IfeNyLk------GRKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI--IFENYLK------GRKRALWFSVSSDLKFD 333 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE--Eehhhhc------ccceeEEEEeccccccc
Confidence 3467788888887766532 24554 344555565433 2333333 24589999998888777
Q ss_pred HHHHHHHhccCCceEEEEecCCCCChhhHHH--hhCCCcEEEECcHHHHHHHhcC--Cc----------CCCC-eeEEEE
Q 008956 106 IQDEAVKFGKSSRISCTCLYGGAPKGPQLKD--IDRGVDIVVATPGRLNDILEMR--RI----------SLNQ-VSYLVL 170 (547)
Q Consensus 106 ~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~--~~~~~~IlV~Tp~~L~~~l~~~--~~----------~l~~-~~~lVl 170 (547)
....++..+.. +|.+..+.--. +.+...+ -.-.-.|+++||-.|+--.... .. .-.+ =.+|||
T Consensus 334 AERDL~DigA~-~I~V~alnK~K-YakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 334 AERDLRDIGAT-GIAVHALNKFK-YAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred hhhchhhcCCC-Cccceehhhcc-cccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 77777776643 25444331100 0000000 0012369999998876433210 00 0011 258999
Q ss_pred ecccccccC---------CcHHHHHHHHHhCCCCceEEEEecc
Q 008956 171 DEADRMLDM---------GFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 171 DEaH~ll~~---------g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
||||+..+. .....+..+.+.+|+.+ ++.-|||
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~AR-VVYASAT 453 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNAR-VVYASAT 453 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhCCCce-EEEeecc
Confidence 999987662 14456777778887655 8888988
No 281
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.54 E-value=0.068 Score=60.15 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=53.0
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 41 PTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 41 ~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
+++-|++++.. ....++|.|..|||||.+.+.-+...+..... ....+|+|+.|+..+.++.+.+.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~---~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY---KARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78999998865 35689999999999998766555555432111 235899999999999999998887654
No 282
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.52 E-value=0.034 Score=52.62 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
++|+.+|+|+|||..+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 68999999999997544
No 283
>PTZ00293 thymidine kinase; Provisional
Probab=95.51 E-value=0.035 Score=52.28 Aligned_cols=38 Identities=18% Similarity=-0.011 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCc
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 99 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Pt 99 (547)
|+=.++.+|++||||.-.+-.+..+... +.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a-------g~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS-------EKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc-------CCceEEEEec
Confidence 3445788999999997555444433333 5688999885
No 284
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.50 E-value=0.077 Score=56.58 Aligned_cols=93 Identities=28% Similarity=0.254 Sum_probs=58.3
Q ss_pred CCCCHHHH-HHHHHCCCCCCcH----HHHHHHHHHhC--CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEE
Q 008956 23 TGFPPELL-REVHNAGFSSPTP----IQAQSWPIALQ--SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 95 (547)
Q Consensus 23 ~~l~~~l~-~~l~~~g~~~~~~----~Q~~~i~~il~--g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLi 95 (547)
.++.++++ ..|.++-=.+++. +|.+-=+.+.. ++-++|++..|||||.++|--+...+...+ .+-.++.|||
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R-~~l~~k~vlv 265 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR-GPLQAKPVLV 265 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccc-cccccCceEE
Confidence 34555544 4555554334432 34443333443 345788899999999988765555444433 2233456999
Q ss_pred EcCcHHHHHHHHHHHHHhccC
Q 008956 96 LSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
+.|++.+.+-+...+-.++..
T Consensus 266 l~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred EcCcHHHHHHHHHhchhhccC
Confidence 999999999888887776643
No 285
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.49 E-value=0.21 Score=53.41 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=26.6
Q ss_pred CeeEEEEecccccccCC-cHHHHHHHHHhCC-CCceEEEEeccCcHHHH
Q 008956 164 QVSYLVLDEADRMLDMG-FEPQIRKIVKEVP-ARRQTLMYTATWPREVR 210 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l~-~~~q~l~~SAT~~~~~~ 210 (547)
++++|||||+|.+.... ....+..+++.+. ...++++.|...|..+.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 56789999999875432 1233444444432 34556665555555543
No 286
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.41 E-value=0.12 Score=52.72 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=25.2
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
....+|||||+|.+... ....+..+++..+....+|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999986432 3445666666666666555543
No 287
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.1 Score=56.31 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=26.5
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
.+++++||||+|.|....+ ..+.+.++..|+...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998765433 44556677766666566544
No 288
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.39 E-value=0.27 Score=44.85 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=67.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHh
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 137 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~ 137 (547)
+.|--..|-|||.+++=-++..+-. +.+|+|+-=-+. ....-+...+....++.+...--+-........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~-------G~rV~ivQFlKg--~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~- 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH-------GMRVLIVQFLKG--GRYSGELKALKKLPNVEIERFGKGFVWRMNEEE- 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT-------T--EEEEESS----SS--HHHHHHGGGT--EEEE--TT----GGGHH-
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC-------CCEEEEEEEecC--CCCcCHHHHHHhCCeEEEEEcCCcccccCCCcH-
Confidence 4555678999999998877777665 678888865544 111223332222222322211100000000000
Q ss_pred hCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCc--HHHHHHHHHhCCCCceEEEEeccCcHHHHHHH
Q 008956 138 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF--EPQIRKIVKEVPARRQTLMYTATWPREVRKIA 213 (547)
Q Consensus 138 ~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~--~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~ 213 (547)
.+ ........+.. ...+.-..+++||+||+=..++.++ ...+..+++..|....+|++--.+|+++.+.+
T Consensus 76 ---~~--~~~~~~~~~~a-~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 76 ---ED--RAAAREGLEEA-KEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp ---HH--HHHHHHHHHHH-HHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred ---HH--HHHHHHHHHHH-HHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 00 00001111111 1234456799999999998888885 55678888888888888887777887777665
No 289
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.39 E-value=0.11 Score=50.01 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=32.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
.+..+++.+++|+|||..++..+...+.. +..+++++- .+...++.+.+..+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-------g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD-------GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc-------CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 35678889999999997655434333322 446777764 344455555555443
No 290
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.38 E-value=0.13 Score=55.38 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=16.3
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~ 75 (547)
+.+|+++|.|+|||.++.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999876543
No 291
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.37 E-value=0.06 Score=49.09 Aligned_cols=53 Identities=17% Similarity=0.388 Sum_probs=42.4
Q ss_pred CCCeeEEEEecccccccCCc--HHHHHHHHHhCCCCceEEEEeccCcHHHHHHHH
Q 008956 162 LNQVSYLVLDEADRMLDMGF--EPQIRKIVKEVPARRQTLMYTATWPREVRKIAA 214 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~--~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~ 214 (547)
-..+++|||||+=..++.++ ...+..+++..|+...+|++.-.+|+++.+++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998888874 456778888888888888888888887776654
No 292
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.36 E-value=0.032 Score=55.21 Aligned_cols=54 Identities=20% Similarity=0.071 Sum_probs=31.9
Q ss_pred HHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 008956 51 IALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAV 111 (547)
Q Consensus 51 ~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~ 111 (547)
-+..+.-+++.+++|+|||...+..+...... .+.++++++-- +-..++...+.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~------~g~~vl~iS~E-~~~~~~~~r~~ 79 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ------HGVRVGTISLE-EPVVRTARRLL 79 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh------cCceEEEEEcc-cCHHHHHHHHH
Confidence 34456778899999999997555433333222 14578887652 23344444443
No 293
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.34 E-value=0.086 Score=54.55 Aligned_cols=52 Identities=31% Similarity=0.266 Sum_probs=33.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
+.-+++.+++|+|||+..+..+...... +.+++|+.-. +-..|+...+..+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~-------g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR-------GGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc-------CCeEEEEECC-cCHHHHHHHHHHcC
Confidence 3557888999999997555433332221 3578888764 44567766666554
No 294
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.32 E-value=0.058 Score=64.70 Aligned_cols=124 Identities=15% Similarity=0.069 Sum_probs=78.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
++|+-|.++|. ..+++++|.|..|||||.+.+--++..+... . ....+|+|+=|+.-+.++.+.+.+..... +
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~---~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~ 73 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-V---DIDRLLVVTFTNAAAREMKERIEEALQKA-L 73 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-C---CHhhEEEEeccHHHHHHHHHHHHHHHHHH-H
Confidence 36899999997 3688999999999999987665555555432 1 12369999999999988888777654221 0
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCC--CeeEEEEecccc
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLN--QVSYLVLDEADR 175 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~--~~~~lVlDEaH~ 175 (547)
. .........+.+..-...-|+|...|...+-+.....- +..+=|+||...
T Consensus 74 ~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 Q-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred h-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 00111112233333457889999888754433322211 335667888874
No 295
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.26 E-value=0.1 Score=48.00 Aligned_cols=88 Identities=19% Similarity=0.085 Sum_probs=51.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 136 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 136 (547)
-.++.+|+.||||...+-.+..+... +.++++..|.. ..... ...+...-|..
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~-------g~~v~vfkp~i----------D~R~~---~~~V~Sr~G~~------- 58 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEA-------GMKVLVFKPAI----------DTRYG---VGKVSSRIGLS------- 58 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHc-------CCeEEEEeccc----------ccccc---cceeeeccCCc-------
Confidence 35788999999998655444444333 66899999852 11111 11111111111
Q ss_pred hhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc
Q 008956 137 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 175 (547)
Q Consensus 137 ~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ 175 (547)
..-++|-.+..+.+.+....... .+++|.||||+-
T Consensus 59 ---~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF 93 (201)
T COG1435 59 ---SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQF 93 (201)
T ss_pred ---ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHh
Confidence 13466667777777776544332 278999999995
No 296
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.25 E-value=0.11 Score=57.30 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=24.9
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEE
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMY 201 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~ 201 (547)
..++++||||+|+|.... .+.+.++++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 468899999999876543 34455566665555545554
No 297
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.24 E-value=0.13 Score=57.85 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=26.4
Q ss_pred CeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHH
Q 008956 164 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAA 214 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~ 214 (547)
...+|||||+|++.. .....++..+. ..+++++++|.++....+..
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE-~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE-NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc-CceEEEEEecCCChHhhhhh
Confidence 456899999998642 22233333333 35677777775544333333
No 298
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.24 E-value=0.1 Score=55.07 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+++.+|+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999997554
No 299
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.22 E-value=0.13 Score=53.84 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
.++++.+++|+|||...-
T Consensus 56 ~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999997543
No 300
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.056 Score=54.68 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=26.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
+.+|+++|+|+|||+.+=. ++. . -..+.|=+-...|+..|.-+-
T Consensus 246 kgvLm~GPPGTGKTlLAKA--vAT--E-------c~tTFFNVSsstltSKwRGeS 289 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKA--VAT--E-------CGTTFFNVSSSTLTSKWRGES 289 (491)
T ss_pred ceeeeeCCCCCcHHHHHHH--HHH--h-------hcCeEEEechhhhhhhhccch
Confidence 6799999999999964321 111 1 114555555556666654443
No 301
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.20 E-value=0.069 Score=58.21 Aligned_cols=48 Identities=10% Similarity=0.232 Sum_probs=30.5
Q ss_pred CCeeEEEEecccccccCC-cHHHHHHHHHhCCC-CceEEEEeccCcHHHH
Q 008956 163 NQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPA-RRQTLMYTATWPREVR 210 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l~~-~~q~l~~SAT~~~~~~ 210 (547)
.++++|||||+|.+.... ....+..+++.+.. ..++|+.|-..|.++.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 457899999999876533 23445556655544 4667776666665543
No 302
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.19 E-value=0.43 Score=47.24 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=34.2
Q ss_pred CCeeEEEEecccccccC-CcHHHHHHHHHhCC------CCceEEEEeccCcHHHHHHHHHhc
Q 008956 163 NQVSYLVLDEADRMLDM-GFEPQIRKIVKEVP------ARRQTLMYTATWPREVRKIAADLL 217 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~------~~~q~l~~SAT~~~~~~~~~~~~l 217 (547)
.++++||||=+-++-.. ....++..+....+ +...++.++||...+....+..+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 45788999998875421 12344555555444 455688899997665555555544
No 303
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.19 E-value=0.19 Score=49.53 Aligned_cols=9 Identities=11% Similarity=0.232 Sum_probs=4.0
Q ss_pred cccHHHHHH
Q 008956 387 QVPRELRDM 395 (547)
Q Consensus 387 ~v~~~l~~l 395 (547)
++|.|-..-
T Consensus 318 empswqqqq 326 (465)
T KOG3973|consen 318 EMPSWQQQQ 326 (465)
T ss_pred CCCcHHHhc
Confidence 344554443
No 304
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.17 E-value=0.11 Score=51.17 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHHHh----CCC-cEEEEcCCCchHHHHHH
Q 008956 39 SSPTPIQAQSWPIAL----QSR-DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il----~g~-~vlv~a~TGsGKT~~~l 73 (547)
..+++.+.+++..+. .+. .+++.+++|+|||+.+.
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 356667777776553 233 57889999999997543
No 305
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.14 E-value=0.11 Score=64.74 Aligned_cols=62 Identities=23% Similarity=0.207 Sum_probs=43.6
Q ss_pred CCCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHH---HHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHH
Q 008956 39 SSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYL---LPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 106 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l---~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~ 106 (547)
..+++.|++++..++.. +-++|.+..|+|||++.. -++...... .+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh------cCCeEEEEeChHHHHHHH
Confidence 47899999999999876 446778999999997541 122222211 255899999997665554
No 306
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.17 Score=51.30 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=27.6
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEec
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 203 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SA 203 (547)
..+.+|||||||.|... -...+.+.++.-+....+++.+.
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 67899999999987542 34556666666666666666554
No 307
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.13 E-value=0.22 Score=52.17 Aligned_cols=54 Identities=6% Similarity=0.170 Sum_probs=33.9
Q ss_pred CCeeEEEEecccccccC-CcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh
Q 008956 163 NQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~ 216 (547)
..+++||||=+-++-.. ....++..+.....+..-++.++||...+....+..|
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 35678888888764321 1334555555556566667888888776665555555
No 308
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.12 E-value=0.061 Score=53.92 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=26.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
..+|+++|+|+|||..+-+. ..-. ..+ .-+.+=++-|.+-+..+.+.+
T Consensus 163 pSmIlWGppG~GKTtlArli--a~ts---k~~--SyrfvelSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLI--ASTS---KKH--SYRFVELSATNAKTNDVRDIF 210 (554)
T ss_pred CceEEecCCCCchHHHHHHH--Hhhc---CCC--ceEEEEEeccccchHHHHHHH
Confidence 36899999999999744322 1111 111 124566666655555444443
No 309
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.12 E-value=0.1 Score=58.68 Aligned_cols=81 Identities=19% Similarity=0.363 Sum_probs=67.1
Q ss_pred HHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-ccccCCCCC
Q 008956 256 ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAARGLDIK 329 (547)
Q Consensus 256 ~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~~~GiDip 329 (547)
++.....+.+++|.++|...|...++.+++. +.+..+||+++..+|..+++.+.+|+++|+|+|. .+...+.+.
T Consensus 303 il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~ 382 (681)
T PRK10917 303 ALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFH 382 (681)
T ss_pred HHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhc
Confidence 3333445779999999999999888887653 5689999999999999999999999999999995 455567888
Q ss_pred CccEEEE
Q 008956 330 DIRVVVN 336 (547)
Q Consensus 330 ~v~~VI~ 336 (547)
++.+||.
T Consensus 383 ~l~lvVI 389 (681)
T PRK10917 383 NLGLVII 389 (681)
T ss_pred ccceEEE
Confidence 8888774
No 310
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.09 E-value=0.086 Score=55.32 Aligned_cols=145 Identities=12% Similarity=0.189 Sum_probs=78.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHH-HHHHHHHHHHHhccCCceEEEEecCCCCChhhHH
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE-LATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 135 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~-L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 135 (547)
-.++.+..|||||.++.+.++..+... ..+..+|++-|+.. |...+..++.......++....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i- 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI- 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-
Confidence 357789999999998777666665553 02458899989876 66666666665443333321111111100 00
Q ss_pred HhhC-CCcEEEECc-HHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCC--CCceEEEEeccCcHHHHH
Q 008956 136 DIDR-GVDIVVATP-GRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP--ARRQTLMYTATWPREVRK 211 (547)
Q Consensus 136 ~~~~-~~~IlV~Tp-~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~--~~~q~l~~SAT~~~~~~~ 211 (547)
.+.. +..|++..- +...++. ....+.++.+|||..+.. ..+..++..+. .....+++|.+|+...--
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~ik-----~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNKLK-----SGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred EecCCCeEEEeecccCChhHhh-----CcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 1112 445666554 3222211 123368999999998743 34444444443 222247778887643333
Q ss_pred HHHHhc
Q 008956 212 IAADLL 217 (547)
Q Consensus 212 ~~~~~l 217 (547)
+...++
T Consensus 147 ~~~~f~ 152 (396)
T TIGR01547 147 VKKRFI 152 (396)
T ss_pred HHHHHH
Confidence 344443
No 311
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.08 E-value=0.14 Score=57.00 Aligned_cols=92 Identities=22% Similarity=0.286 Sum_probs=74.1
Q ss_pred ccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcccc---eEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccc
Q 008956 246 PMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQFG---AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV 321 (547)
Q Consensus 246 ~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~---~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~ 321 (547)
...|.+.+..++.+. ..++.+||.++.+..+..+.+.|++.|+ +..+|++++..+|.+......+|+.+|+|.|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 456777777776654 4577899999999999999999997765 889999999999999999999999999999965
Q ss_pred cccCCCCCCccEEEEcC
Q 008956 322 AARGLDIKDIRVVVNYD 338 (547)
Q Consensus 322 ~~~GiDip~v~~VI~~d 338 (547)
+.- .=++++..||..+
T Consensus 250 AvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 250 AVF-APVEDLGLVAIWD 265 (665)
T ss_pred eEE-eccCCCCEEEEEc
Confidence 422 3455677777544
No 312
>PRK04328 hypothetical protein; Provisional
Probab=95.08 E-value=0.15 Score=49.84 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=35.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
.+..+++.+++|+|||..++--++..+.. +.+++|++ +.+-..++.+.+..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~-------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 34668889999999997655544454433 45777777 4455666777766664
No 313
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.04 E-value=0.044 Score=51.60 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=25.7
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
.+.++||+||||.|-+- -...+++.++...+..++.+.-.+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 56789999999987542 344566666665554444443333
No 314
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.03 E-value=0.15 Score=51.97 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHhCC-----CcEEEEcCCCchHHHHHHHH
Q 008956 41 PTPIQAQSWPIALQS-----RDIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 41 ~~~~Q~~~i~~il~g-----~~vlv~a~TGsGKT~~~l~~ 75 (547)
++|||...+..+.+- +-.|+.+|.|.||+..+...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~ 41 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHL 41 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHH
Confidence 478888888877652 35788999999999866543
No 315
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.29 Score=50.30 Aligned_cols=128 Identities=23% Similarity=0.252 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE-cCcHH--HHHHHHHHHHHhccCCceEEEEecCCCCCh
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL-SPTRE--LATQIQDEAVKFGKSSRISCTCLYGGAPKG 131 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil-~Ptr~--L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~ 131 (547)
++.+++++|+|+|||+.....+...... +.++.++ +-+-- -++||..... ..++.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~-------g~~V~lItaDtyR~gAveQLk~yae----~lgvpv---------- 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQ-------NRTVGFITTDTFRSGAVEQFQGYAD----KLDVEL---------- 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCCccCccHHHHHHHHhh----cCCCCE----------
Confidence 3457788999999998655444333222 3344444 43321 2344443332 222211
Q ss_pred hhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccC-CcHHHHHHHHHhCCCCceEEEEeccCcH-HH
Q 008956 132 PQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPR-EV 209 (547)
Q Consensus 132 ~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~~~~q~l~~SAT~~~-~~ 209 (547)
.++.+|..|.+.+.... ...++++|+||=+=+.-.. .....+..+...+.+.--++.+|||... +.
T Consensus 265 -----------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~ 332 (407)
T PRK12726 265 -----------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADV 332 (407)
T ss_pred -----------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHH
Confidence 12345666655444211 1245789999988764321 1233444444444444335667776543 34
Q ss_pred HHHHHH
Q 008956 210 RKIAAD 215 (547)
Q Consensus 210 ~~~~~~ 215 (547)
.+.+..
T Consensus 333 ~~i~~~ 338 (407)
T PRK12726 333 MTILPK 338 (407)
T ss_pred HHHHHh
Confidence 444433
No 316
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.01 E-value=0.11 Score=55.35 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=59.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 135 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 135 (547)
..+++.+++|+|||... .++...+.... .+.+++++.+ .++..++...+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~----~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF----SDLKVSYMSG-DEFARKAVDILQKTH--------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC----CCCeEEEEEH-HHHHHHHHHHHHHhh---------------------
Confidence 35889999999999532 22233332211 1346666655 567666655543200
Q ss_pred HhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC-cHHHHHHHHHhCCC-CceEEEEeccCcHHH
Q 008956 136 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPA-RRQTLMYTATWPREV 209 (547)
Q Consensus 136 ~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l~~-~~q~l~~SAT~~~~~ 209 (547)
+.+..+.. .+.++++|||||+|.+.... ....+..+++.+.. ..|+|+.|-..|...
T Consensus 195 -------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred -------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 11111111 13457799999999765321 23445555555433 346666665555444
No 317
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.99 E-value=0.12 Score=55.34 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=24.6
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
...++++||||+|.|....+ +.+.+.++..++...+++.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 35789999999998754332 34455555555554444433
No 318
>PF13173 AAA_14: AAA domain
Probab=94.98 E-value=0.22 Score=43.04 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=24.2
Q ss_pred CeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 164 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
.-.+|+|||+|.+-+ +...++.+.... ++.++++++
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tg 96 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTG 96 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEc
Confidence 456899999998854 567777777655 344455433
No 319
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.96 E-value=0.11 Score=57.16 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=26.5
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
+...+++||||+|.|.... ...+.+.++..+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4568899999999875432 344555566666666666554
No 320
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.93 E-value=0.18 Score=52.17 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~ 72 (547)
..+++.+|+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999754
No 321
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.12 Score=56.53 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=27.0
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
...++++||||+|+|....+ +.+.+.++.-+....+|+.|.-
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCC
Confidence 34688999999998765433 3444556665556656655543
No 322
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.90 E-value=0.12 Score=57.12 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=25.6
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
.++++|||||+|.|.... ...+.+.++..+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 467899999999765432 334556666666666566554
No 323
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.89 E-value=0.048 Score=52.15 Aligned_cols=107 Identities=17% Similarity=0.210 Sum_probs=58.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 136 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 136 (547)
-+++.+++|+|||-. +.++...+.... .+.+++++.. .++.....+.+..-
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~----~~~~v~y~~~-~~f~~~~~~~~~~~----------------------- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH----PGKRVVYLSA-EEFIREFADALRDG----------------------- 86 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC----TTS-EEEEEH-HHHHHHHHHHHHTT-----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc----ccccceeecH-HHHHHHHHHHHHcc-----------------------
Confidence 478999999999973 333333333211 1346666655 35555544443320
Q ss_pred hhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC-cHHHHHHHHHhCC-CCceEEEEeccCcHHH
Q 008956 137 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQIRKIVKEVP-ARRQTLMYTATWPREV 209 (547)
Q Consensus 137 ~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l~-~~~q~l~~SAT~~~~~ 209 (547)
..+.+.+. +..+++|+||++|.+.... ....+..+++.+. ...++|+.|...|.++
T Consensus 87 ----------~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 87 ----------EIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ----------SHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ----------cchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 01112221 3467899999999876532 2344555555543 3567777776766544
No 324
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.88 E-value=0.17 Score=53.24 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=25.8
Q ss_pred CeeEEEEecccccccCC-cHHHHHHHHHhC-CCCceEEEEeccCcHHHH
Q 008956 164 QVSYLVLDEADRMLDMG-FEPQIRKIVKEV-PARRQTLMYTATWPREVR 210 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l-~~~~q~l~~SAT~~~~~~ 210 (547)
++++|||||+|.+.... ....+..++..+ ....++++.|...|..+.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 35789999999875432 122344444443 234556555544454443
No 325
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.87 E-value=0.11 Score=56.85 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=25.3
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
..++++||||+|+|.... ...+.++++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 467899999999775443 345556666666555555443
No 326
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.86 E-value=0.075 Score=56.33 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=15.4
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~ 75 (547)
.+|+++|.|+|||.++.+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3699999999999876543
No 327
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.82 E-value=0.16 Score=52.62 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=23.8
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
....++||||+|.|....+ ..+.+.++..+....+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4578999999998754322 23444455555555555543
No 328
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.80 E-value=0.19 Score=49.50 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~ 74 (547)
.++++.+|+|+|||..+-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999986543
No 329
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.78 E-value=0.41 Score=49.37 Aligned_cols=110 Identities=14% Similarity=0.209 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 134 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 134 (547)
.+.+.+.++.|.|||+ |+-++....... .+.+ ++.-+...++...+.++.... .+..
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~~----~k~R----~HFh~Fm~~vh~~l~~~~~~~----------~~l~--- 118 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPIK----RKRR----VHFHEFMLDVHSRLHQLRGQD----------DPLP--- 118 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCcc----cccc----ccccHHHHHHHHHHHHHhCCC----------ccHH---
Confidence 4679999999999996 443333322110 0111 133466677777776654110 0000
Q ss_pred HHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhC-CCCceEEEEeccCcHHH
Q 008956 135 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARRQTLMYTATWPREV 209 (547)
Q Consensus 135 ~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l-~~~~q~l~~SAT~~~~~ 209 (547)
.+.+.+ .....+|+|||+| +-|.+-.-.+..+++.+ ....-++++|.++|.++
T Consensus 119 ---------------~va~~l------~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 119 ---------------QVADEL------AKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred ---------------HHHHHH------HhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 011111 2345689999999 45554444555566554 44567888888888653
No 330
>PRK04195 replication factor C large subunit; Provisional
Probab=94.77 E-value=0.22 Score=53.68 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
.+.+|+.+|+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 331
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.76 E-value=0.31 Score=49.37 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=28.2
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
...+++|||+||.|-.. -.+.+.++++.-|+...+++.|..
T Consensus 106 g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 106 GGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 46789999999998644 355666777776666655555443
No 332
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.75 E-value=0.18 Score=49.58 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=26.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
.+.-++|.+++|+|||..++-.+...+.. +.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-------Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR-------GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC-------CCcEEEEEe
Confidence 34568889999999998666544444332 457888873
No 333
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.70 E-value=0.27 Score=47.45 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=34.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
+.-+++.+++|+|||..++..++..+.. +.+++++.-- +-..++.+.+..+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~-------g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ-------GKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC-------CCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 4567888999999997655544444332 5578877764 34456666666654
No 334
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.68 E-value=0.39 Score=50.08 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=30.7
Q ss_pred CCeeEEEEecccccc-cCCcHHHHHHHHHhCC---CCceEEEEeccCcH-HHHHHHHHh
Q 008956 163 NQVSYLVLDEADRML-DMGFEPQIRKIVKEVP---ARRQTLMYTATWPR-EVRKIAADL 216 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll-~~g~~~~i~~i~~~l~---~~~q~l~~SAT~~~-~~~~~~~~~ 216 (547)
..+++||||=+-++. +......+..++.... +...+|.+|||... .+.+.+..+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 467889999876542 1222334444444431 23457888999876 444444443
No 335
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.65 E-value=0.29 Score=55.62 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=15.8
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~ 74 (547)
.++|+.+|+|+|||..+-.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 5899999999999976443
No 336
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.64 E-value=0.26 Score=49.67 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=29.0
Q ss_pred CCCeeEEEEecccccccCCcH--HHHHHHHHhC-CCCceEEEEeccCcHHHHH
Q 008956 162 LNQVSYLVLDEADRMLDMGFE--PQIRKIVKEV-PARRQTLMYTATWPREVRK 211 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~--~~i~~i~~~l-~~~~q~l~~SAT~~~~~~~ 211 (547)
+.++++|||||.....-..+. ..+..|+... .....+++.|.-.+.+..+
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 356889999999843222222 2344555433 4556677777765554443
No 337
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.64 E-value=0.26 Score=48.92 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=29.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCC--CCCCEEEEEcCcHHHHHHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDP--RLGPTVLVLSPTRELATQIQDEAV 111 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~--~~~~~vLil~Ptr~L~~Q~~~~~~ 111 (547)
.+++++++|+-|||...- -+........+. ..-|.++|-+|...-....+..+-
T Consensus 62 p~lLivG~snnGKT~Ii~--rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIE--RFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred CceEEecCCCCcHHHHHH--HHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 479999999999997432 122111111111 112566777777655555555443
No 338
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.62 E-value=0.23 Score=53.78 Aligned_cols=91 Identities=19% Similarity=0.287 Sum_probs=69.0
Q ss_pred cchHHHHHHHHHh-cCCCCeEEEEcCChHHHHHHHHHHhccc--ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccc
Q 008956 247 MDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTRQF--GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 323 (547)
Q Consensus 247 ~~k~~~l~~~l~~-~~~~~k~IVF~~s~~~~~~l~~~L~~~~--~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~ 323 (547)
.-|.......+.. ...+.++||.++++..+..+++.|++.+ .+.++|+.++..+|..+.....+|+.+|+|+|..+.
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 3454444443332 2446789999999999999999998764 578999999999999999888999999999996443
Q ss_pred cCCCCCCccEEEEcC
Q 008956 324 RGLDIKDIRVVVNYD 338 (547)
Q Consensus 324 ~GiDip~v~~VI~~d 338 (547)
. +.++++.+||..+
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 4566778777544
No 339
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.60 E-value=0.18 Score=56.94 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=26.5
Q ss_pred eeEEEEecccccccCCc----HHHHHHHHHhCCCCceEEEEeccCcHHH
Q 008956 165 VSYLVLDEADRMLDMGF----EPQIRKIVKEVPARRQTLMYTATWPREV 209 (547)
Q Consensus 165 ~~~lVlDEaH~ll~~g~----~~~i~~i~~~l~~~~q~l~~SAT~~~~~ 209 (547)
-.+|+|||+|.+...+- ...+..++..+-...++.++.||-+.+.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 34899999999875432 2233334443333445666677765554
No 340
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.18 Score=55.34 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLPG 76 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~ 76 (547)
.+|+.+|.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47889999999998766543
No 341
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.2 Score=52.67 Aligned_cols=70 Identities=23% Similarity=0.123 Sum_probs=43.7
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-------HhCC-----CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCC
Q 008956 22 ATGFPPELLREVHNAGFSSPTPIQAQSWPI-------ALQS-----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL 89 (547)
Q Consensus 22 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-------il~g-----~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~ 89 (547)
..+.+++.++.+...|...-.+.=.+.+.. +... ..+++.+|+|||||..+.-. .. .. .
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~i--A~-~S------~ 563 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKI--AL-SS------D 563 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHH--Hh-hc------C
Confidence 457788888888888776555555554432 1111 25899999999999533221 11 11 2
Q ss_pred CCEEEEEcCcH
Q 008956 90 GPTVLVLSPTR 100 (547)
Q Consensus 90 ~~~vLil~Ptr 100 (547)
-|.+=|++|..
T Consensus 564 FPFvKiiSpe~ 574 (744)
T KOG0741|consen 564 FPFVKIISPED 574 (744)
T ss_pred CCeEEEeChHH
Confidence 56788888853
No 342
>PHA00729 NTP-binding motif containing protein
Probab=94.57 E-value=0.23 Score=47.31 Aligned_cols=75 Identities=11% Similarity=0.106 Sum_probs=38.2
Q ss_pred cEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccC-CcH----HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh
Q 008956 142 DIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-GFE----PQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 142 ~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~-g~~----~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~ 216 (547)
..++.+.+.|.+.+....-....+++|||||+---+.. .+. .....+...+....+++.+...-+..+...++.-
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 45555556565555422112234578999993221111 011 1222334444445566777777666776666653
No 343
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.54 E-value=0.16 Score=57.50 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=24.6
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEE
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMY 201 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~ 201 (547)
..++++||||||+|... -...+.++++..+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 46789999999987433 234455566665555555554
No 344
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.53 E-value=0.18 Score=54.83 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=25.8
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
..+++++||||+|.|.... .+.+.+.++..+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3567899999999875432 234555566655556556554
No 345
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.53 E-value=0.42 Score=50.82 Aligned_cols=51 Identities=12% Similarity=0.311 Sum_probs=29.4
Q ss_pred CeeEEEEecccccccCC-cHHHHHHHHHhCCC-CceEEEEeccCcHHHHHHHH
Q 008956 164 QVSYLVLDEADRMLDMG-FEPQIRKIVKEVPA-RRQTLMYTATWPREVRKIAA 214 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l~~-~~q~l~~SAT~~~~~~~~~~ 214 (547)
++++|+|||+|.+.+.. ....+..++..+.. ..++|+.|...|..+..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH
Confidence 46789999999876542 22344444444333 45566655555655544433
No 346
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.51 E-value=0.1 Score=50.59 Aligned_cols=48 Identities=25% Similarity=0.174 Sum_probs=30.0
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC---cHHHHHHH
Q 008956 53 LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP---TRELATQI 106 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P---tr~L~~Q~ 106 (547)
..|.-+++.|++|+|||...+-.++...... +.++++++. ..+++.++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~------g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ------GKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC------CCceEEEeCCCCHHHHHHHH
Confidence 3456688899999999975554444443321 457888883 33444443
No 347
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.49 E-value=0.041 Score=63.07 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=78.3
Q ss_pred HHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCcc
Q 008956 253 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR 332 (547)
Q Consensus 253 l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~ 332 (547)
+...++......++|||+......+.+...+.-..-.....+. .++-...+..|++ --.+|+-+...+-|+|+-++.
T Consensus 1211 ~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~--t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~ 1287 (1394)
T KOG0298|consen 1211 AILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE--TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEAT 1287 (1394)
T ss_pred HHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC--Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhh
Confidence 3444555566689999999888888777776532111111121 2333445666665 223566778889999999999
Q ss_pred EEEEcCCCCChhhhHhhhccccCCCCceEEEEEe
Q 008956 333 VVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFF 366 (547)
Q Consensus 333 ~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~ 366 (547)
||+..++--++.+-.|.+||+.|.|++....+..
T Consensus 1288 Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~ 1321 (1394)
T KOG0298|consen 1288 HVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHR 1321 (1394)
T ss_pred hhheeccccCchHHHhhhhhhhhcccccchhhhh
Confidence 9999999999999999999999999876554443
No 348
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.47 E-value=0.31 Score=53.38 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=25.6
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
...+++||||+|.|.... .+.+.+.++..+....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 568899999999875443 334555666666555555544
No 349
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.46 E-value=0.26 Score=51.47 Aligned_cols=142 Identities=14% Similarity=0.027 Sum_probs=81.4
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHH
Q 008956 28 ELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQ 107 (547)
Q Consensus 28 ~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~ 107 (547)
.+++.+++ .+..+-..|.++.-..-.|+. .+.+=.|||||...+.-+. .+.. .+ +..+++|.+=|+.|++++.
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh~--kn--Pd~~I~~Tfftk~L~s~~r 223 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELHS--KN--PDSRIAFTFFTKILASTMR 223 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHhc--CC--CCceEEEEeehHHHHHHHH
Confidence 45555554 345566778887766666666 5667789999964333222 2222 22 3459999999999999998
Q ss_pred HHHHHhcc--------CCceEEEEecCCCCChhhHHHhhCCCcEEEECcH-------HHHHHHhcCCcCCCCeeEEEEec
Q 008956 108 DEAVKFGK--------SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPG-------RLNDILEMRRISLNQVSYLVLDE 172 (547)
Q Consensus 108 ~~~~~~~~--------~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~-------~L~~~l~~~~~~l~~~~~lVlDE 172 (547)
....+|+- ...+.+..-.||.++.-.......-|+..=.|.. -+..-+-...-...-+++|.|||
T Consensus 224 ~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE 303 (660)
T COG3972 224 TLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDE 303 (660)
T ss_pred HHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecc
Confidence 88777652 1234555566666655443333222222222211 01111111112255689999999
Q ss_pred cccc
Q 008956 173 ADRM 176 (547)
Q Consensus 173 aH~l 176 (547)
++-+
T Consensus 304 ~QDF 307 (660)
T COG3972 304 SQDF 307 (660)
T ss_pred cccC
Confidence 9963
No 350
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.44 E-value=0.25 Score=55.57 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=69.6
Q ss_pred ccchHHHHHHHHH-hcCCCCeEEEEcCChHHHHHHHHHHhccc--ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcccc
Q 008956 246 PMDKHRRLEQILR-SQEPGSKIIVFCSTKKMCDQLARNLTRQF--GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVA 322 (547)
Q Consensus 246 ~~~k~~~l~~~l~-~~~~~~k~IVF~~s~~~~~~l~~~L~~~~--~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~ 322 (547)
...|.......+. ....+.++||.+++++.+..+++.|++.+ .+..+|++++..+|........++..+|+|+|..+
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 3445544433332 22346789999999999999999998754 58899999999999999888999999999999643
Q ss_pred ccCCCCCCccEEEEcC
Q 008956 323 ARGLDIKDIRVVVNYD 338 (547)
Q Consensus 323 ~~GiDip~v~~VI~~d 338 (547)
.. +.+.++..||..+
T Consensus 252 l~-~p~~~l~liVvDE 266 (679)
T PRK05580 252 LF-LPFKNLGLIIVDE 266 (679)
T ss_pred hc-ccccCCCEEEEEC
Confidence 32 4566788777554
No 351
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.41 E-value=0.18 Score=56.25 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=67.0
Q ss_pred HHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-ccccCCCC
Q 008956 255 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAARGLDI 328 (547)
Q Consensus 255 ~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~~~GiDi 328 (547)
.++.....+.+++|.++|+..|...++.+++. +.+..++|+++..+|..+++...+|+.+|+|+|. .+...+++
T Consensus 276 ~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~ 355 (630)
T TIGR00643 276 AMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEF 355 (630)
T ss_pred HHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccc
Confidence 33444455679999999999999988877653 5689999999999999999999999999999995 44566778
Q ss_pred CCccEEEE
Q 008956 329 KDIRVVVN 336 (547)
Q Consensus 329 p~v~~VI~ 336 (547)
.++.+||.
T Consensus 356 ~~l~lvVI 363 (630)
T TIGR00643 356 KRLALVII 363 (630)
T ss_pred cccceEEE
Confidence 88888774
No 352
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.40 E-value=0.27 Score=54.15 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=25.8
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
...++++||||+|.|... -.+.+.+.++..+....+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 357889999999976543 2345556666655555555444
No 353
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.39 E-value=0.58 Score=47.23 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=25.2
Q ss_pred CeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEec
Q 008956 164 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 203 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SA 203 (547)
...+|||||+|.+... ....+..+++..+....+|+.+.
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEeC
Confidence 4679999999987543 23455666666666666665443
No 354
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.36 E-value=0.31 Score=48.00 Aligned_cols=38 Identities=34% Similarity=0.448 Sum_probs=23.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcH
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 100 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr 100 (547)
.+|-+|||+||+- ++ ..+....-.....-.|++|+|++
T Consensus 90 ~~VYGPTG~GKSq--Ll---RNLis~~lI~P~PETVfFItP~~ 127 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ--LL---RNLISCQLIQPPPETVFFITPQK 127 (369)
T ss_pred EEEECCCCCCHHH--HH---HHhhhcCcccCCCCceEEECCCC
Confidence 4667999999994 22 22222221112244899999986
No 355
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.31 E-value=0.74 Score=42.00 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=29.3
Q ss_pred CCeeEEEEeccccccc-CCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh
Q 008956 163 NQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~-~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~ 216 (547)
...+++|+|....+.. ......+..+........-++.++|.-..+..+.+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 4567899999886421 11223333333333345556667776555554554444
No 356
>CHL00181 cbbX CbbX; Provisional
Probab=94.30 E-value=0.61 Score=46.54 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~ 75 (547)
+.++++.+|+|+|||+.+-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 345899999999999866543
No 357
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.29 E-value=0.11 Score=49.81 Aligned_cols=130 Identities=19% Similarity=0.170 Sum_probs=66.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC-------ceEEEEecCC
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS-------RISCTCLYGG 127 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~-------~i~~~~~~g~ 127 (547)
+..+++.+++|+|||+.++--++..+... +.++++++- .+-.+++.+.+..+.... .+.+......
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~------ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF------GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH------T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGG
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc------CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccc
Confidence 46789999999999986665555554431 237788874 355566677776654221 1222211111
Q ss_pred CCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC----cHHHHHHHHHhCCCCceEEEEec
Q 008956 128 APKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG----FEPQIRKIVKEVPARRQTLMYTA 203 (547)
Q Consensus 128 ~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g----~~~~i~~i~~~l~~~~q~l~~SA 203 (547)
.... . -..++.+...+... +.-...+.+|||-...+.... +...+..+...+.....+.++++
T Consensus 92 ~~~~----------~--~~~~~~l~~~i~~~-i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 92 RIGW----------S--PNDLEELLSKIREA-IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GST-----------T--SCCHHHHHHHHHHH-HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cccc----------c--ccCHHHHHHHHHHH-HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 0000 0 11223333322211 111123789999998772221 34556666666665666666666
Q ss_pred c
Q 008956 204 T 204 (547)
Q Consensus 204 T 204 (547)
.
T Consensus 159 ~ 159 (226)
T PF06745_consen 159 E 159 (226)
T ss_dssp E
T ss_pred c
Confidence 6
No 358
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.26 E-value=0.2 Score=51.06 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=28.3
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
....+++|||+||+|-.. -.+.+.++++.-|...-+|++|.-
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 356899999999998543 355666667775555555555543
No 359
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.22 E-value=0.27 Score=49.70 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=28.8
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
...++++|||+||+|... -.+.+.+.++.-|+...+|+.|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 356889999999998543 355666777776666655555544
No 360
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.51 Score=48.73 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=19.0
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHh
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKE 191 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~ 191 (547)
...-+||+||++.|.+..- ..+..++..
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~ 149 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRA 149 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhh
Confidence 4456899999999987643 444454444
No 361
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.18 E-value=0.055 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=15.7
Q ss_pred EEEccccccCCCCCCccEEEEcC
Q 008956 316 LVATDVAARGLDIKDIRVVVNYD 338 (547)
Q Consensus 316 LVaT~~~~~GiDip~v~~VI~~d 338 (547)
-+.|-.-..|+.++.+.+|+.-+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~ 206 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSD 206 (234)
T ss_pred ceechHHcceEEeCCEEEEECCC
Confidence 45666678888888876666533
No 362
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.15 E-value=0.19 Score=55.35 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=23.7
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
..++++||||+|+|....| +.+.+.++..+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeEEEEEE
Confidence 4688999999998754432 23444455544444455443
No 363
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.14 E-value=0.15 Score=51.53 Aligned_cols=66 Identities=23% Similarity=0.176 Sum_probs=42.6
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHH
Q 008956 31 REVHNAGFSSPTPIQAQSWPIAL-QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 103 (547)
Q Consensus 31 ~~l~~~g~~~~~~~Q~~~i~~il-~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~ 103 (547)
+.+...|. +++.|.+.+..+. .++++|++++||||||.. +-.++..+.... ...+++.+-.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~----~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC----CCceEEEecCCcccc
Confidence 34555554 5678887776554 467899999999999963 444444443211 123778888777773
No 364
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.11 E-value=0.38 Score=49.41 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=28.0
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
...+.++||||||.|-.. -.+.+.++++..+....++++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEECC
Confidence 346889999999987543 345566677776655655665533
No 365
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.01 E-value=0.39 Score=49.64 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=28.0
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccC
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 205 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~ 205 (547)
.....++||||+|.|-.. -...+.+.++..+....+|++|..+
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 356889999999987432 3445566666665556566655543
No 366
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.00 E-value=0.23 Score=52.91 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=16.0
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPG 76 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~ 76 (547)
+-+++++|||+|||++....+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred cEEEEECCCCccHHHHHHHHH
Confidence 346778999999998765444
No 367
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.99 E-value=0.42 Score=48.59 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHhCC-----CcEEEEcCCCchHHHHHHHH
Q 008956 41 PTPIQAQSWPIALQS-----RDIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 41 ~~~~Q~~~i~~il~g-----~~vlv~a~TGsGKT~~~l~~ 75 (547)
++|||...|..+.+. +..|+.+|.|.|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 368888888887742 35789999999999865543
No 368
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.56 Score=46.00 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=36.6
Q ss_pred HHHhCCC-----cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 50 PIALQSR-----DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 50 ~~il~g~-----~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
|.+..|+ .+|+.+|+|+||++ |.-+++.- ...+.+-+.+..|+..|.-+-.++.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVATE---------AnSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVATE---------ANSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHHhh---------cCCceEEeehHHHHHHHhccHHHHH
Confidence 5666664 48999999999995 33332221 1156777777889998887766654
No 369
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.89 E-value=0.44 Score=49.76 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=25.6
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
....++||||+|+|... ....+.++++.-++...+|+.|.+
T Consensus 116 ~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTER-AANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCeEEEEECC
Confidence 46789999999998543 234455566655555544444433
No 370
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.89 E-value=0.45 Score=43.59 Aligned_cols=142 Identities=19% Similarity=0.186 Sum_probs=76.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHH-HHHHHHHhccCCceEEEEecCCCCChhhHHH
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQ-IQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 136 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q-~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 136 (547)
++|.-..|-|||++++=.++..+-. +.+++|+-=-+-=... -...+.++ ...+.....--+.....+..+
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~Gh-------G~rv~vvQFiKg~~~~GE~~~~~~~--~~~v~~~~~~~g~tw~~~~~~ 101 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGH-------GLRVGVVQFIKGGWKYGEEAALEKF--GLGVEFHGMGEGFTWETQDRE 101 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcC-------CCEEEEEEEeecCcchhHHHHHHhh--ccceeEEecCCceeCCCcCcH
Confidence 5666788999999998888887766 6677776422111000 01112222 111211111111111111000
Q ss_pred hhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCc--HHHHHHHHHhCCCCceEEEEeccCcHHHHHHHH
Q 008956 137 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF--EPQIRKIVKEVPARRQTLMYTATWPREVRKIAA 214 (547)
Q Consensus 137 ~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~--~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~ 214 (547)
.++ .......... ...+.-..+++||+||.--.+..++ ...+..++...|....+|++--.+|+++.+++.
T Consensus 102 ----~d~--~aa~~~w~~a-~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 102 ----ADI--AAAKAGWEHA-KEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred ----HHH--HHHHHHHHHH-HHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 011 1111111111 1122334689999999998888774 456777888878777788777778888877664
Q ss_pred H
Q 008956 215 D 215 (547)
Q Consensus 215 ~ 215 (547)
.
T Consensus 175 l 175 (198)
T COG2109 175 L 175 (198)
T ss_pred H
Confidence 3
No 371
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=93.85 E-value=0.24 Score=53.02 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=19.8
Q ss_pred hhhhHhhhccccCCCCceEEEEEecCCChHHHH
Q 008956 343 VEDYVHRIGRTGRAGATGVAYTFFGDQDSRYAS 375 (547)
Q Consensus 343 ~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~ 375 (547)
+.+....+=|+||+|..+..=.-+.--......
T Consensus 323 P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 323 PNVPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred CCCHHHhhhhccccccCCCCeeEEEEecHHHHH
Confidence 345556777778887777655555555444333
No 372
>COG1485 Predicted ATPase [General function prediction only]
Probab=93.80 E-value=0.51 Score=47.54 Aligned_cols=139 Identities=16% Similarity=0.194 Sum_probs=81.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHh--------------------CC-----CcEEEEcCCCchHHHHHHHHHHHHh
Q 008956 26 PPELLREVHNAGFSSPTPIQAQSWPIAL--------------------QS-----RDIVAIAKTGSGKTLGYLLPGFIHL 80 (547)
Q Consensus 26 ~~~l~~~l~~~g~~~~~~~Q~~~i~~il--------------------~g-----~~vlv~a~TGsGKT~~~l~~~l~~l 80 (547)
|.+....+...+=..+-+.|..++.++- .. +.+.+.++.|.|||. |+-++...
T Consensus 11 p~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~--LMD~Fy~~ 88 (367)
T COG1485 11 PVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTM--LMDLFYES 88 (367)
T ss_pred HHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHH--HHHHHHhh
Confidence 3444555555555566777777765432 11 468899999999995 55444432
Q ss_pred hhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCc
Q 008956 81 KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI 160 (547)
Q Consensus 81 ~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~ 160 (547)
... ..-.-++.-.....+.+++..+.... .+...... ++
T Consensus 89 lp~--------~~k~R~HFh~FM~~vH~~l~~l~g~~----------dpl~~iA~-----------------~~------ 127 (367)
T COG1485 89 LPG--------ERKRRLHFHRFMARVHQRLHTLQGQT----------DPLPPIAD-----------------EL------ 127 (367)
T ss_pred CCc--------cccccccHHHHHHHHHHHHHHHcCCC----------CccHHHHH-----------------HH------
Confidence 221 11233455677777777777765221 00000111 11
Q ss_pred CCCCeeEEEEecccccccCCcHHHHHHHHHh-CCCCceEEEEeccCcHHH
Q 008956 161 SLNQVSYLVLDEADRMLDMGFEPQIRKIVKE-VPARRQTLMYTATWPREV 209 (547)
Q Consensus 161 ~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~-l~~~~q~l~~SAT~~~~~ 209 (547)
..+..+|+|||.| +.|.+-.-.+..+++. +.....++.+|.|.|.++
T Consensus 128 -~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 128 -AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred -HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 2456789999999 4555444445555554 345788899999988654
No 373
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.79 E-value=0.46 Score=50.66 Aligned_cols=146 Identities=12% Similarity=0.014 Sum_probs=83.8
Q ss_pred CCCcHHHHHHHHHHhC------C----CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHH
Q 008956 39 SSPTPIQAQSWPIALQ------S----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQD 108 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~------g----~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~ 108 (547)
..+-|||.-++-.++- + +..+|..|=+=|||..+..-++....... ..+-.+.|++|+.+-+.+...
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---RSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---hcCCcEEEEeccHHHHHHhhH
Confidence 4778999999988871 1 35788888999999754422333322222 235689999999999999888
Q ss_pred HHHHhccCCc-eEEEEecCCCCChhhHHHhhCCCcEEEECcHHH---HHHHh--cCCcCCCCeeEEEEecccccccCCcH
Q 008956 109 EAVKFGKSSR-ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL---NDILE--MRRISLNQVSYLVLDEADRMLDMGFE 182 (547)
Q Consensus 109 ~~~~~~~~~~-i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L---~~~l~--~~~~~l~~~~~lVlDEaH~ll~~g~~ 182 (547)
.++....... +.. ......+....+.... +..+. ....+-.+..+.|+||.|...+.+
T Consensus 137 ~ar~mv~~~~~l~~--------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 137 PARDMVKRDDDLRD--------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred HHHHHHHhCcchhh--------------hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--
Confidence 8876654332 100 0001112222222222 22222 123444567899999999865432
Q ss_pred HHHHHHHHhCC--CCceEEEEec
Q 008956 183 PQIRKIVKEVP--ARRQTLMYTA 203 (547)
Q Consensus 183 ~~i~~i~~~l~--~~~q~l~~SA 203 (547)
..+..+..-+. +..+++..|.
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEec
Confidence 44555544443 3455555554
No 374
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.77 E-value=0.12 Score=47.69 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=29.0
Q ss_pred HHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHH
Q 008956 51 IALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQ 107 (547)
Q Consensus 51 ~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~ 107 (547)
.+..++++++.+++|+|||..+...+...+.. +..++++ +..+|...+.
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-------g~~v~f~-~~~~L~~~l~ 91 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAIANEAIRK-------GYSVLFI-TASDLLDELK 91 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEE-EHHHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHHHHHhccC-------CcceeEe-ecCceecccc
Confidence 34457889999999999998655444444433 4456665 4556766543
No 375
>PHA00012 I assembly protein
Probab=93.76 E-value=1.3 Score=44.37 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhh
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKR 82 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~ 82 (547)
-++.+.+|+|||+.++.-+...+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4788999999999877766666555
No 376
>PRK10867 signal recognition particle protein; Provisional
Probab=93.74 E-value=0.48 Score=49.98 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=15.2
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 008956 58 IVAIAKTGSGKTLGYLLPGF 77 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l 77 (547)
+++++++|+|||+++.-.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67789999999987654443
No 377
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.68 E-value=0.28 Score=56.74 Aligned_cols=79 Identities=15% Similarity=0.336 Sum_probs=65.1
Q ss_pred HhcCCCCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-ccccCCCCCCc
Q 008956 258 RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAARGLDIKDI 331 (547)
Q Consensus 258 ~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~~~GiDip~v 331 (547)
.....+.+++|.++|...|...++.|++. +.+..+++..+..++..+++.+++|+++|+|+|. .+...+.+.++
T Consensus 495 ~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L 574 (926)
T TIGR00580 495 KAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDL 574 (926)
T ss_pred HHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccC
Confidence 33344578999999999999999888753 3567889999999999999999999999999995 55567788888
Q ss_pred cEEEE
Q 008956 332 RVVVN 336 (547)
Q Consensus 332 ~~VI~ 336 (547)
.+||.
T Consensus 575 ~llVI 579 (926)
T TIGR00580 575 GLLII 579 (926)
T ss_pred CEEEe
Confidence 88774
No 378
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.68 E-value=0.043 Score=50.45 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=30.5
Q ss_pred HHhhCCCcEEEECcHHHHHHHhcCCcC--CCCeeEEEEeccccccc
Q 008956 135 KDIDRGVDIVVATPGRLNDILEMRRIS--LNQVSYLVLDEADRMLD 178 (547)
Q Consensus 135 ~~~~~~~~IlV~Tp~~L~~~l~~~~~~--l~~~~~lVlDEaH~ll~ 178 (547)
+.....++|||+++..|++......+. ..+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 445566899999999998755433332 23557999999998765
No 379
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.64 E-value=0.33 Score=51.39 Aligned_cols=40 Identities=30% Similarity=0.131 Sum_probs=25.3
Q ss_pred HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 52 ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 52 il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
+..+.-+++.|.||+|||..++-.+...... .+.+++|++
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~------~g~~v~~fS 230 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALR------EGKPVLFFS 230 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHh------CCCcEEEEE
Confidence 3345567888999999997655444333212 145788887
No 380
>PF05729 NACHT: NACHT domain
Probab=93.62 E-value=1.8 Score=38.51 Aligned_cols=38 Identities=13% Similarity=0.341 Sum_probs=22.5
Q ss_pred EEEEecccccccCC-------cHHHHHHHHHh-CCCCceEEEEecc
Q 008956 167 YLVLDEADRMLDMG-------FEPQIRKIVKE-VPARRQTLMYTAT 204 (547)
Q Consensus 167 ~lVlDEaH~ll~~g-------~~~~i~~i~~~-l~~~~q~l~~SAT 204 (547)
+||||-+|.+.... +...+..++.. +++..++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 49999999887632 22334445544 4556666665554
No 381
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.60 E-value=0.53 Score=51.63 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~ 75 (547)
+-.|+++|.|+|||.++-+.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34788999999999876543
No 382
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.56 E-value=0.31 Score=52.61 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.4
Q ss_pred EEEEcCCCchHHHHHHH
Q 008956 58 IVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~ 74 (547)
+|+.+|+|+|||.++.+
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999987654
No 383
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.53 E-value=0.36 Score=52.71 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=23.2
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
....++||||||.|... -...+.+.++..+....+|+++
T Consensus 118 ~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEEEEEEC
Confidence 35788999999987432 2234555555555444444444
No 384
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.45 E-value=0.47 Score=52.45 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=15.2
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~ 75 (547)
.+|+.+|.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999866543
No 385
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.43 E-value=0.36 Score=48.13 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
.++++.+|+|+|||+++.
T Consensus 59 ~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 479999999999998664
No 386
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.43 E-value=0.47 Score=51.52 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=25.8
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
....++||||||+|.... ...+.+.++..+....+|+.|
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999975432 345556666666556555544
No 387
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.41 E-value=0.23 Score=50.18 Aligned_cols=43 Identities=26% Similarity=0.128 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 104 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~ 104 (547)
++-+++.+|+|+|||..++..+...... +.+++++..-..+-.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~-------g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA-------GGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEcccchhHH
Confidence 4567888999999998766554444332 557888866544444
No 388
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.39 E-value=0.35 Score=46.32 Aligned_cols=52 Identities=31% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
+.-+++.+++|+|||..++--+...+.. +.++++++.. +-.+++.+.+..+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~-------g~~~~y~s~e-~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN-------GEKAMYISLE-EREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECC-CCHHHHHHHHHHcC
Confidence 4567889999999997655444444433 4578887764 56777777777664
No 389
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.38 E-value=0.39 Score=51.81 Aligned_cols=61 Identities=20% Similarity=0.085 Sum_probs=43.0
Q ss_pred HHHHHHhC-----CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 47 QSWPIALQ-----SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 47 ~~i~~il~-----g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
..+..++. +.-+++.+|+|+|||+..+.-+...+.+ +.+++|++ .-|-..|+...+..++.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-------ge~~~y~s-~eEs~~~i~~~~~~lg~ 315 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN-------KERAILFA-YEESRAQLLRNAYSWGI 315 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEE-eeCCHHHHHHHHHHcCC
Confidence 44555554 3568889999999998665544444433 55888887 46888898888887753
No 390
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.36 E-value=0.45 Score=50.89 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~ 74 (547)
.+|+.+|+|+|||+.+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999986654
No 391
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.35 E-value=1.7 Score=40.15 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=23.4
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEE
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMY 201 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~ 201 (547)
.....+|||||+|+|... ....+...++..++...++++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEE
Confidence 356889999999997543 233344555554444444443
No 392
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.32 E-value=0.28 Score=48.89 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~ 75 (547)
+.+++++|||+|||+.....
T Consensus 195 ~vi~~vGptGvGKTTt~~kL 214 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKL 214 (282)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35778899999999865543
No 393
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.30 E-value=0.43 Score=52.11 Aligned_cols=132 Identities=16% Similarity=0.106 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC--ceEEEEecCCCCChh
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS--RISCTCLYGGAPKGP 132 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~--~i~~~~~~g~~~~~~ 132 (547)
.+-.++..|==.|||.... +++..+.... .+.++++++|.+..++.+++++..+.... ...+..+.| ..
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~----~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~--- 324 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATF----RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ET--- 324 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhC----CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cE---
Confidence 3567778899999997544 4444333211 15699999999999999998887754321 111111222 11
Q ss_pred hHHHhhCC--CcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhC-CCCceEEEEeccC
Q 008956 133 QLKDIDRG--VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARRQTLMYTATW 205 (547)
Q Consensus 133 ~~~~~~~~--~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l-~~~~q~l~~SAT~ 205 (547)
..-.+.++ ..|.+++. -....+.=..+++||||||+.+.+. .+..++-.+ ..+.++|++|.|-
T Consensus 325 I~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 325 ISFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred EEEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCC
Confidence 00111222 24555531 1122233457899999999987543 344444332 2377889998774
No 394
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.22 E-value=0.36 Score=51.40 Aligned_cols=52 Identities=27% Similarity=0.226 Sum_probs=34.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
+.-+++.+++|+|||+..+..+...... +.++||++.- +-..|+...+..+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~-------g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN-------QMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc-------CCcEEEEECc-CCHHHHHHHHHHcC
Confidence 3457888999999997655433332221 3478888764 55677776666654
No 395
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.10 E-value=0.28 Score=49.25 Aligned_cols=61 Identities=26% Similarity=0.177 Sum_probs=44.2
Q ss_pred CCCCCcHHHHHHHHHHhCCC-cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHH
Q 008956 37 GFSSPTPIQAQSWPIALQSR-DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQ 105 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~-~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q 105 (547)
.|..+++-|...+-.+...+ ++|+++.||||||+. +-++...+.. .-+++.+--|.||..+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~-------~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDS-------DERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCC-------cccEEEEeehhhhccC
Confidence 57789999999998887766 999999999999963 2222222211 2388999888887443
No 396
>PRK09354 recA recombinase A; Provisional
Probab=93.07 E-value=0.26 Score=50.18 Aligned_cols=43 Identities=23% Similarity=0.121 Sum_probs=30.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 104 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~ 104 (547)
++-+.+.+|+|+|||..++..+...... +..++|+..--.+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~-------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA-------GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEECCccchHH
Confidence 3567788999999998776655554433 568888887665554
No 397
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.01 E-value=0.8 Score=52.93 Aligned_cols=19 Identities=32% Similarity=0.209 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~ 74 (547)
.++|+.+|+|+|||..+-.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4799999999999976543
No 398
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.98 E-value=0.48 Score=49.20 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=33.0
Q ss_pred CeeEEEEecccccccCC-cHHHHHHHHHhCCC-CceEEEEeccCcHHHHH
Q 008956 164 QVSYLVLDEADRMLDMG-FEPQIRKIVKEVPA-RRQTLMYTATWPREVRK 211 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l~~-~~q~l~~SAT~~~~~~~ 211 (547)
++++++||.++.+.... ....+-.+++.+.. ..|+++.|..+|.++..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 67899999999876542 34455555555543 45888888888876653
No 399
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.96 E-value=0.36 Score=48.46 Aligned_cols=67 Identities=27% Similarity=0.318 Sum_probs=41.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHH
Q 008956 30 LREVHNAGFSSPTPIQAQSWPIAL-QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 103 (547)
Q Consensus 30 ~~~l~~~g~~~~~~~Q~~~i~~il-~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~ 103 (547)
++.+...|. +++.|.+.+..++ .+++++++++||||||.. +-.++..+... ....+++++-.+.||.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~----~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN----DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc----CCCceEEEECCchhhc
Confidence 445554453 4556666665544 567899999999999964 34444443221 0134788888888873
No 400
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.96 E-value=0.28 Score=50.01 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=29.9
Q ss_pred HHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHH
Q 008956 51 IALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 103 (547)
Q Consensus 51 ~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~ 103 (547)
++..+++++++++||||||. ++-+++..+.. ..+++.+=-+.||.
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~ip~-------~~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREIPA-------IERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhCCC-------CCeEEEecCCCccc
Confidence 34567899999999999996 34444444322 34677766666653
No 401
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.96 E-value=0.32 Score=49.30 Aligned_cols=67 Identities=25% Similarity=0.252 Sum_probs=43.3
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHH-hCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 29 LLREVHNAGFSSPTPIQAQSWPIA-LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 29 l~~~l~~~g~~~~~~~Q~~~i~~i-l~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
-++.+...|+ +++.|.+.+..+ ..+++++++++||||||. ++..++..+.... ...+++++-.+.||
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~----~~~rivtIEd~~El 190 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD----PTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC----CCceEEEEcCCCcc
Confidence 3455555554 457788887654 556789999999999995 4444444332111 12377888887776
No 402
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.93 E-value=0.69 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=15.9
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 008956 58 IVAIAKTGSGKTLGYLLPGFI 78 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~ 78 (547)
+++++++|+|||+++.-.+..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 677899999999876544443
No 403
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.93 E-value=0.94 Score=52.45 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
.+.|+.+|+|+|||..+-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 578999999999997554
No 404
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.90 E-value=0.25 Score=50.83 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=18.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHh
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHL 80 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l 80 (547)
.+..+++++|||||||+. +..++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 456689999999999974 34444444
No 405
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.82 E-value=0.69 Score=48.50 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=15.6
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~ 75 (547)
.+|+++|.|+|||.++.+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4788999999999876654
No 406
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.82 E-value=0.62 Score=48.88 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=29.2
Q ss_pred CCCeeEEEEecccccccC-CcHHHHHHHHHhCCCCceEEEEeccCcHH-HHHHHHHh
Q 008956 162 LNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPRE-VRKIAADL 216 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~~~~q~l~~SAT~~~~-~~~~~~~~ 216 (547)
+.+.+++++|.+=+.-.. .....+..+.....+...+|.++||.... +.+.+..|
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f 323 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY 323 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh
Confidence 456788999987432110 11233333322233345678899997544 44444443
No 407
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.76 E-value=0.55 Score=54.10 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=16.9
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPG 76 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~ 76 (547)
.++|+.+|+|+|||..+-..+
T Consensus 201 ~n~lL~G~pGvGKTal~~~la 221 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLA 221 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 589999999999997654433
No 408
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=0.77 Score=50.89 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.0
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~ 75 (547)
+.+|+.+|.|+|||..+.+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 45789999999999866543
No 409
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.74 E-value=0.4 Score=51.59 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
.+.+|+.+|+|+|||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999753
No 410
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.73 E-value=0.059 Score=47.30 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
++|+.+|+|+|||..+-
T Consensus 1 ~vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEEESSSSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 47999999999997543
No 411
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.70 E-value=2.6 Score=42.76 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=32.1
Q ss_pred CCeeEEEEecccccccC-CcHHHHHHHHHhC------CCCceEEEEeccCcHHHHHHHHHh
Q 008956 163 NQVSYLVLDEADRMLDM-GFEPQIRKIVKEV------PARRQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l------~~~~q~l~~SAT~~~~~~~~~~~~ 216 (547)
.++++||||=+-++-.. ....++..+...+ .+...++.++||...+....+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 56789999999876422 1234455544322 233457888999765544444444
No 412
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.65 E-value=0.17 Score=51.65 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=30.9
Q ss_pred HHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHH
Q 008956 50 PIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 103 (547)
Q Consensus 50 ~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~ 103 (547)
.++..+++++++++||||||+. +-.++..+.. ..+++.+-.+.||.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~-------~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTM-SKTLISAIPP-------QERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHH-HHHHHcccCC-------CCCEEEECCCcccc
Confidence 3455678999999999999963 3333333321 33677788887764
No 413
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=92.58 E-value=2.1 Score=39.16 Aligned_cols=135 Identities=13% Similarity=0.142 Sum_probs=76.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCC-----CCCh-
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGG-----APKG- 131 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~-----~~~~- 131 (547)
+.|.-..|-|||.+++=-++..+-. +.+|+|+-=-+--.. .-+...+....++.....-.+ .+..
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAaG~-------G~rV~iiQFlKg~~~--~GE~~~l~~~~~v~~~~~g~~~~~~~~~~~~ 94 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIAGQ-------GTPVLIVQFLKGGIQ--QGPDRPIQLGQNLDWVRCDLPRCLDTPHLDE 94 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHhcC-------CCEEEEEEEecCCCc--chHHHHHHhCCCcEEEECCCCCeeeCCCcCH
Confidence 5555678999999998877777665 778888753332210 011111111112322211100 0000
Q ss_pred hhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCc--HHHHHHHHHhCCCCceEEEEeccCcHHH
Q 008956 132 PQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF--EPQIRKIVKEVPARRQTLMYTATWPREV 209 (547)
Q Consensus 132 ~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~--~~~i~~i~~~l~~~~q~l~~SAT~~~~~ 209 (547)
+... ......+... ..+.-..+++||+||+=..++.++ ...+..+++..|....+|++--.+|+++
T Consensus 95 ~~~~-----------~~~~~~~~a~-~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~L 162 (178)
T PRK07414 95 SEKK-----------ALQELWQYTQ-AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESL 162 (178)
T ss_pred HHHH-----------HHHHHHHHHH-HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHH
Confidence 0100 0111111111 123346789999999999888885 5678888888888888888877888877
Q ss_pred HHHH
Q 008956 210 RKIA 213 (547)
Q Consensus 210 ~~~~ 213 (547)
.+++
T Consensus 163 ie~A 166 (178)
T PRK07414 163 LAIA 166 (178)
T ss_pred HHhC
Confidence 7655
No 414
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.51 E-value=2.1 Score=43.02 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=67.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC-c-HHHHHHHHHHHHHhccCCceEEEE-ecCCCCChhhH
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP-T-RELATQIQDEAVKFGKSSRISCTC-LYGGAPKGPQL 134 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P-t-r~L~~Q~~~~~~~~~~~~~i~~~~-~~g~~~~~~~~ 134 (547)
+++++-.|+|||++..-.+...... +.++++.+- | |+=|.+ ++..|+...++.+.. -.|..+- ..
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~-------g~~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~~~G~DpA-aV- 209 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQ-------GKSVLLAAGDTFRAAAIE---QLEVWGERLGVPVISGKEGADPA-AV- 209 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHC-------CCeEEEEecchHHHHHHH---HHHHHHHHhCCeEEccCCCCCcH-HH-
Confidence 5677999999998754333333222 456655543 3 333333 233333333444433 1222211 11
Q ss_pred HHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC-cHHHHHHHHHhCCCCc------eEEEEeccCcH
Q 008956 135 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQIRKIVKEVPARR------QTLMYTATWPR 207 (547)
Q Consensus 135 ~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g-~~~~i~~i~~~l~~~~------q~l~~SAT~~~ 207 (547)
..+.+. .....++++|++|=|-||-+.. .-.++++|..-+.+.. -++.+-||.-.
T Consensus 210 ----------------afDAi~--~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 210 ----------------AFDAIQ--AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred ----------------HHHHHH--HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 112222 1224567889999999876532 4566667666655432 34444888776
Q ss_pred HHHHHHHHh
Q 008956 208 EVRKIAADL 216 (547)
Q Consensus 208 ~~~~~~~~~ 216 (547)
+-..-++.|
T Consensus 272 nal~QAk~F 280 (340)
T COG0552 272 NALSQAKIF 280 (340)
T ss_pred hHHHHHHHH
Confidence 665555544
No 415
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.48 E-value=0.42 Score=52.79 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=23.7
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
+....++||||+|.|.... ...+.+.++..+....+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999975432 233444455544444444443
No 416
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.38 E-value=0.22 Score=50.37 Aligned_cols=44 Identities=27% Similarity=0.126 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQ 105 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q 105 (547)
++-+.+.+|+|+|||..++..+...... +.+++|+.+--.+-.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~-------g~~~vyId~E~~~~~~ 98 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL-------GGTVAFIDAEHALDPV 98 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCCEEEECccccHHHH
Confidence 3567888999999998766555444332 5688888876555543
No 417
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=92.34 E-value=0.32 Score=44.72 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=23.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCc
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 99 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Pt 99 (547)
.++.+|+.||||...+-. +..+.. .+.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~eLi~~-~~~~~~------~~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRR-IHRYEI------AGKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHHHHHH-HHHHHH------TT-EEEEEEES
T ss_pred EEEECCcCChhHHHHHHH-HHHHHh------CCCeEEEEEec
Confidence 477899999999754433 333322 15689999886
No 418
>PRK06904 replicative DNA helicase; Validated
Probab=92.28 E-value=1.2 Score=47.85 Aligned_cols=116 Identities=18% Similarity=0.058 Sum_probs=57.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCC-CCChh
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGG-APKGP 132 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~-~~~~~ 132 (547)
.+.-+|+.|-||.|||..++-.+...... .+..++|++.- .-..|+...+-..... +....+..+ .-..+
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMA------SEKPVLVFSLE-MPAEQIMMRMLASLSR--VDQTKIRTGQNLDQQ 290 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHhhCC--CCHHHhccCCCCCHH
Confidence 34556778999999997544333332222 14467777653 5556666554433221 221112112 22222
Q ss_pred hHH-------HhhCCCcEEEE-----CcHHHHHHHhcCCcCCCCeeEEEEeccccccc
Q 008956 133 QLK-------DIDRGVDIVVA-----TPGRLNDILEMRRISLNQVSYLVLDEADRMLD 178 (547)
Q Consensus 133 ~~~-------~~~~~~~IlV~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~ 178 (547)
.+. .+....++.|- |+..+...+.+.......+++||||=.+.|..
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 222 22233446663 44445443332111123578999999887653
No 419
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.24 E-value=0.87 Score=53.21 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=33.7
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCc
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWP 206 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~ 206 (547)
..--+||||++|.+.+......+..++...+....+|+.|-+.|
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 34458999999987555455678888888888888888887743
No 420
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.24 E-value=0.18 Score=54.55 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=36.7
Q ss_pred CCCcHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHhhh
Q 008956 39 SSPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKR 82 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il----~g~~vlv~a~TGsGKT~~~l~~~l~~l~~ 82 (547)
.+|+++|.+.+..+. +|+--|...|||+|||+..+-.++.++..
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 489999999887765 47877889999999999888888877754
No 421
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.23 E-value=0.56 Score=44.60 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
+.-+++.+++|+|||..++..+...... +.+++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~-------g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ-------GKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEE
Confidence 3557889999999998666544444322 45788873
No 422
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.23 E-value=1.3 Score=51.21 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=21.3
Q ss_pred HHHHHHHHhC------CCcEEEEcCCCchHHHHHH
Q 008956 45 QAQSWPIALQ------SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 45 Q~~~i~~il~------g~~vlv~a~TGsGKT~~~l 73 (547)
|.+.|..+++ ..++|+.+|+|+|||..+-
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 6666665542 3589999999999997544
No 423
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.06 E-value=0.45 Score=49.20 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
...+++++|||||||+. +..++.++.... ...+++.+-...|+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~----~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETY----PDRKIVTYEDPIEY 191 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcC----CCceEEEEecCchh
Confidence 35688999999999964 455555543311 12356665544444
No 424
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.05 E-value=0.99 Score=50.48 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=37.1
Q ss_pred CeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCc
Q 008956 164 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWP 206 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~ 206 (547)
..-++|||+-|++.+......+..+++..|++...++.|=+-|
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3458999999999988888889999999999998888887754
No 425
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.03 E-value=13 Score=40.84 Aligned_cols=163 Identities=20% Similarity=0.151 Sum_probs=85.9
Q ss_pred CCccCCCCHHHHHHHHHC-CCCC---------CcHHHHHHHHHHhC----C--C-cEEEEcCCCchHHHHHHHHHHHHhh
Q 008956 19 SFDATGFPPELLREVHNA-GFSS---------PTPIQAQSWPIALQ----S--R-DIVAIAKTGSGKTLGYLLPGFIHLK 81 (547)
Q Consensus 19 ~f~~~~l~~~l~~~l~~~-g~~~---------~~~~Q~~~i~~il~----g--~-~vlv~a~TGsGKT~~~l~~~l~~l~ 81 (547)
.-+.++-.+.-++.|+.. .=.+ -|--|..++-..+. . + -+-+.|.-|-||+.|.-+.+...+.
T Consensus 222 ~~~~~~~~e~~lk~Lkesl~~~~P~G~Lv~~~kT~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa 301 (1011)
T KOG2036|consen 222 DDENLSPSERELKELKESLSDDQPAGPLVGLCKTLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVA 301 (1011)
T ss_pred ccccCChhhhhhHhhhhhhcCCCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHh
Confidence 344444455556666543 2222 27788888755432 1 2 3556789999999877676666655
Q ss_pred hccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce----EEEEecCCCCChhhHHHh-----hC--CCcEEEECcHH
Q 008956 82 RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI----SCTCLYGGAPKGPQLKDI-----DR--GVDIVVATPGR 150 (547)
Q Consensus 82 ~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i----~~~~~~g~~~~~~~~~~~-----~~--~~~IlV~Tp~~ 150 (547)
... ..+.|.+|.-+-..-+.+..-+=+...++ ....+....+. ..+.+ .+ .--|-...|.
T Consensus 302 ~Gy------snIyvtSPspeNlkTlFeFv~kGfDaL~Yqeh~Dy~iI~s~np~--fkkaivRInifr~hrQtIQYi~P~- 372 (1011)
T KOG2036|consen 302 FGY------SNIYVTSPSPENLKTLFEFVFKGFDALEYQEHVDYDIIQSTNPD--FKKAIVRINIFREHRQTIQYISPH- 372 (1011)
T ss_pred cCc------ceEEEcCCChHHHHHHHHHHHcchhhhcchhhcchhhhhhcChh--hhhhEEEEEEeccccceeEeeccc-
Confidence 422 25778889877666666554332222111 11111111100 00000 00 0011111111
Q ss_pred HHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCc
Q 008956 151 LNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWP 206 (547)
Q Consensus 151 L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~ 206 (547)
....+.+.++||||||-.+ ..+.+++++ .+-+++|+.|++
T Consensus 373 -------D~~kl~q~eLlVIDEAAAI----PLplvk~Li-----gPylVfmaSTin 412 (1011)
T KOG2036|consen 373 -------DHQKLGQAELLVIDEAAAI----PLPLVKKLI-----GPYLVFMASTIN 412 (1011)
T ss_pred -------hhhhccCCcEEEechhhcC----CHHHHHHhh-----cceeEEEeeccc
Confidence 1233667889999999976 456666665 345788888864
No 426
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.92 E-value=0.67 Score=55.02 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=62.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-ccccCCCCCCccEE
Q 008956 261 EPGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAARGLDIKDIRVV 334 (547)
Q Consensus 261 ~~~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~~~GiDip~v~~V 334 (547)
..+.+++|.|+|...|..+++.+++. +.+..+++..+..++..+++.++++.++|||+|. .+...+++.++.+|
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEE
Confidence 34679999999999999999888753 3567789999999999999999999999999995 45555677788776
Q ss_pred EE
Q 008956 335 VN 336 (547)
Q Consensus 335 I~ 336 (547)
|.
T Consensus 727 VI 728 (1147)
T PRK10689 727 IV 728 (1147)
T ss_pred EE
Confidence 63
No 427
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=91.81 E-value=0.14 Score=51.34 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=43.3
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 38 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 38 ~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
+.-.++-|..=+.++.++.-++..+|-|+|||+.+...+...+..... .++|.-=|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v-----~rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQV-----RRIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhccc-----ceeeecCc
Confidence 556799999999999998888999999999998777776666655322 25566556
No 428
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=0.78 Score=45.63 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=59.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHH-----------HHHHhccCCceEEEEe
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQD-----------EAVKFGKSSRISCTCL 124 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~-----------~~~~~~~~~~i~~~~~ 124 (547)
+-+++++|+|+|||.. --+++.-...+.+.....-.||=...-.|-..|.. .+..+....+.-+.++
T Consensus 178 RliLlhGPPGTGKTSL--CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSL--CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eEEEEeCCCCCChhHH--HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4478899999999953 22333322222233333455665665556555544 3444444444444443
Q ss_pred cCCC---------------CCh---------hhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC
Q 008956 125 YGGA---------------PKG---------PQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 180 (547)
Q Consensus 125 ~g~~---------------~~~---------~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g 180 (547)
+... +.+ .|++++++..+|+|-|...|.+. ++.-.+|-||-....|
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~s----------iD~AfVDRADi~~yVG 325 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDS----------IDVAFVDRADIVFYVG 325 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHH----------HHHHhhhHhhheeecC
Confidence 3221 111 34556667677777665555443 3445667787544433
No 429
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=91.69 E-value=0.91 Score=49.15 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=30.2
Q ss_pred CccCCccCCCCHHHHHHHHHC-C-CCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNA-G-FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~-g-~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~ 72 (547)
|-.+|+++.-.+.+.+.+... . +..+..++... ....+.+|+.+|+|+|||+.+
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 456777776666665555421 0 11222222111 122357999999999999743
No 430
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.64 E-value=0.3 Score=49.19 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+++.+|+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999996443
No 431
>PRK07413 hypothetical protein; Validated
Probab=91.64 E-value=0.44 Score=48.98 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=40.3
Q ss_pred CCCeeEEEEecccccccCCcH--HHHHHHHHhCCCCceEEEEecc-CcHHHHHHHH
Q 008956 162 LNQVSYLVLDEADRMLDMGFE--PQIRKIVKEVPARRQTLMYTAT-WPREVRKIAA 214 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~--~~i~~i~~~l~~~~q~l~~SAT-~~~~~~~~~~ 214 (547)
-..+++|||||+-..++.++. ..+..+++..|....+|++--. .|+++.+++.
T Consensus 303 ~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~AD 358 (382)
T PRK07413 303 SGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLAS 358 (382)
T ss_pred CCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCc
Confidence 457899999999999888863 4677888888877777766665 7777766553
No 432
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.58 E-value=0.89 Score=42.86 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCc
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 99 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Pt 99 (547)
+.-+.+.+++|+|||..++..+...... +.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~-------g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ-------GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECC
Confidence 4567889999999998766544444322 4477777764
No 433
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.54 E-value=1.2 Score=50.65 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~ 72 (547)
..+.+++.+|+|+|||+.+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 3577999999999999643
No 434
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.48 E-value=1.1 Score=47.02 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=29.5
Q ss_pred CccCCccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNA---GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~ 72 (547)
|-.+|++++--+...+.+... -+..|.-++..- +...+.+++.+|+|+|||+.+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 334566666555555555432 122221111111 123578999999999999754
No 435
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=91.45 E-value=0.53 Score=43.96 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=24.6
Q ss_pred CeeEEEEecccccccCCcH-----HHHHHHHHhCCCC-ceEEEEeccCcHHHHHHHHHh
Q 008956 164 QVSYLVLDEADRMLDMGFE-----PQIRKIVKEVPAR-RQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~-----~~i~~i~~~l~~~-~q~l~~SAT~~~~~~~~~~~~ 216 (547)
.-.+|||||||........ +.+...+...... .-++++|-. +..+...++.+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~-~~~id~~ir~l 136 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQS-PSQIDKFIRDL 136 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES--GGGB-HHHHCC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCC-HHHHhHHHHHH
Confidence 4578999999987754322 2222333333333 345555544 34455555543
No 436
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.43 E-value=2 Score=43.95 Aligned_cols=146 Identities=16% Similarity=0.082 Sum_probs=61.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHH---HHHHhccC-CceEEEEecCCCCChhhH
Q 008956 59 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQD---EAVKFGKS-SRISCTCLYGGAPKGPQL 134 (547)
Q Consensus 59 lv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~---~~~~~~~~-~~i~~~~~~g~~~~~~~~ 134 (547)
|+.++.|+|||....+.++..+..... ...++++.....+...+.. .+..+... ..+.........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP----GRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRK------ 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS------EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSE------
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC----CcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCc------
Confidence 467899999999876666555544211 2355666444455554222 33333332 111111000000
Q ss_pred HHhhCCCcEEEECcHHH--HHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccC--cHHHH
Q 008956 135 KDIDRGVDIVVATPGRL--NDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW--PREVR 210 (547)
Q Consensus 135 ~~~~~~~~IlV~Tp~~L--~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~--~~~~~ 210 (547)
..+.++..|.+.+.+.= ..-+. -..+++|++||+-.+.+..+...+......... ...+++|.|+ .....
T Consensus 71 ~~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~~~ 144 (384)
T PF03237_consen 71 IILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGWFY 144 (384)
T ss_dssp EEETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHHH
T ss_pred EEecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCcee
Confidence 00145566666664321 11111 146779999998876554344444443333322 2222444443 33445
Q ss_pred HHHHHhcCCC
Q 008956 211 KIAADLLVNP 220 (547)
Q Consensus 211 ~~~~~~l~~~ 220 (547)
.+......+.
T Consensus 145 ~~~~~~~~~~ 154 (384)
T PF03237_consen 145 EIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHCTS
T ss_pred eeeehhhcCC
Confidence 5555555544
No 437
>CHL00176 ftsH cell division protein; Validated
Probab=91.25 E-value=1.2 Score=49.40 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
.+.+|+.+|+|+|||+.+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999754
No 438
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.22 E-value=1.3 Score=44.79 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=36.0
Q ss_pred EEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 143 IVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 143 IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
|-|-....+.+.+....+ ....+++||||||.|-.. -.+.+.++++..| ...+|++|..
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 333333445555554443 357899999999987543 3456667777766 5545555443
No 439
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=1.1 Score=48.14 Aligned_cols=56 Identities=23% Similarity=0.222 Sum_probs=32.2
Q ss_pred CccCCccCCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNA-GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~ 72 (547)
|-.+|++.+--+++...|..+ =+..-+|-+.+++-.- .-..+|+++|+|+|||+.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~-~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID-APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC-CCCceEEeCCCCccHHHHH
Confidence 345677777666666655533 1112233333333211 2457999999999999743
No 440
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.15 E-value=0.96 Score=44.34 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=57.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 134 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 134 (547)
+.-+++.|.||.|||..++-.+....... +..++|++.- .-..++...+-..... +....+..+.-....+
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~------~~~vly~SlE-m~~~~l~~R~la~~s~--v~~~~i~~g~l~~~e~ 89 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNG------GYPVLYFSLE-MSEEELAARLLARLSG--VPYNKIRSGDLSDEEF 89 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTT------SSEEEEEESS-S-HHHHHHHHHHHHHT--STHHHHHCCGCHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhc------CCeEEEEcCC-CCHHHHHHHHHHHhhc--chhhhhhccccCHHHH
Confidence 34577789999999976665555544431 3588888873 1222233222222111 1111111121112222
Q ss_pred H-------HhhCCCcEEE-E----CcHHHHHHHhcCCcCCCCeeEEEEecccccccC
Q 008956 135 K-------DIDRGVDIVV-A----TPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 179 (547)
Q Consensus 135 ~-------~~~~~~~IlV-~----Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~ 179 (547)
. .+.. ..++| . |++.+...+..-......+++||||=.|.|...
T Consensus 90 ~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 90 ERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 2 2222 23443 3 334555554432222367899999999987663
No 441
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.14 E-value=0.36 Score=51.00 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHhCCCc--EEEEcCCCchHHHHHHHHHHHHhhh
Q 008956 42 TPIQAQSWPIALQSRD--IVAIAKTGSGKTLGYLLPGFIHLKR 82 (547)
Q Consensus 42 ~~~Q~~~i~~il~g~~--vlv~a~TGsGKT~~~l~~~l~~l~~ 82 (547)
.+.|.+.+..+++... +|+.+|||||||+. |..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 6778888877777654 67779999999965 5666666544
No 442
>PRK08506 replicative DNA helicase; Provisional
Probab=91.10 E-value=1.1 Score=48.11 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=56.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 134 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 134 (547)
+.-+++.|.||.|||..++-.+...... +.+++|++.- .-..|+...+-.... ++....+..+.-....+
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~-------g~~V~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~ 261 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQ-------DKGVAFFSLE-MPAEQLMLRMLSAKT--SIPLQNLRTGDLDDDEW 261 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhc-------CCcEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHH
Confidence 4457778999999997655444443221 4567777653 455555555433221 12211111122122222
Q ss_pred H-------HhhCCCcEEEE-----CcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 135 K-------DIDRGVDIVVA-----TPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 135 ~-------~~~~~~~IlV~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
. .+.. ..+.|- |+..+...+.+-......+++||||=.+.|.
T Consensus 262 ~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 262 ERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 2 2222 345553 3444444333211112357899999999765
No 443
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.08 E-value=0.77 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=16.3
Q ss_pred HhCCC-cEEEEcCCCchHHHHHH
Q 008956 52 ALQSR-DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 52 il~g~-~vlv~a~TGsGKT~~~l 73 (547)
+..++ -+.++++.|||||+..=
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH
Confidence 33455 56778999999998654
No 444
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=90.93 E-value=0.6 Score=52.20 Aligned_cols=96 Identities=19% Similarity=0.273 Sum_probs=75.5
Q ss_pred EEEEcCccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcc--cceEEEcCCCCHHHHHHHHHHhhcCCCcEE
Q 008956 240 HIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ--FGAAAIHGDKSQSERDYVLNQFRAGRSPVL 316 (547)
Q Consensus 240 ~~~~~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~--~~~~~ihg~~~~~~R~~~l~~F~~g~~~IL 316 (547)
.+.-++.+.|.+...+++.+. ..++.+||.++-+.....+.+.|+.. ..+.++|+++++.+|.....+.++|+.+|+
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 345566777888877777654 66789999999999888888888766 468899999999999999999999999999
Q ss_pred EEccccccCCCCCCccEEEE
Q 008956 317 VATDVAARGLDIKDIRVVVN 336 (547)
Q Consensus 317 VaT~~~~~GiDip~v~~VI~ 336 (547)
|.|..+-- .=++++-.||.
T Consensus 301 IGtRSAlF-~Pf~~LGLIIv 319 (730)
T COG1198 301 IGTRSALF-LPFKNLGLIIV 319 (730)
T ss_pred EEechhhc-CchhhccEEEE
Confidence 99954321 23456666663
No 445
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.86 E-value=0.71 Score=52.56 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
.+.+++.+|+|+|||+.+-
T Consensus 487 ~~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3568999999999997543
No 446
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.78 E-value=2 Score=43.47 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=20.3
Q ss_pred HHHHHhCCCcEEEEcCCCchHHHHHH
Q 008956 48 SWPIALQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 48 ~i~~il~g~~vlv~a~TGsGKT~~~l 73 (547)
++-.+..++++++.+++|+|||..+.
T Consensus 57 vl~~l~~~~~ilL~G~pGtGKTtla~ 82 (327)
T TIGR01650 57 ICAGFAYDRRVMVQGYHGTGKSTHIE 82 (327)
T ss_pred HHHHHhcCCcEEEEeCCCChHHHHHH
Confidence 34455568899999999999997543
No 447
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=90.68 E-value=0.59 Score=53.04 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=50.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcc------cceE-EEcCCCCHHHHHHHHHHhhcCCCcEEEEcccc
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQ------FGAA-AIHGDKSQSERDYVLNQFRAGRSPVLVATDVA 322 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~------~~~~-~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~ 322 (547)
.+.++++.++|...+...++.|++- +.+. .+|+.++..+++.+++.|.+|+.+|||+|..+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3479999999999998888888642 2222 29999999999999999999999999999643
No 448
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.68 E-value=0.72 Score=47.35 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 103 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~ 103 (547)
+..+++++|||||||+. +..++..+... ...+++.+-...|+.
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~-----~~~~i~tiEdp~E~~ 164 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN-----AAGHIITIEDPIEYV 164 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC-----CCCEEEEEcCChhhh
Confidence 46788999999999974 33344433221 134667666655543
No 449
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.61 E-value=1.5 Score=47.43 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=27.3
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
...+.++||||||.|... -...+.+.++..|+...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 357899999999987543 2345566667766666666554
No 450
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.44 E-value=0.83 Score=47.78 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~ 72 (547)
+.+++.+|+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 57999999999999754
No 451
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.36 E-value=1.2 Score=48.63 Aligned_cols=84 Identities=19% Similarity=0.332 Sum_probs=69.4
Q ss_pred HHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccc-cccCC
Q 008956 253 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-AARGL 326 (547)
Q Consensus 253 l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~-~~~Gi 326 (547)
+...+.....+.++.+-++|.-.|+.-++.|.+. +.+..+.|.+....|+.+++...+|+++|+|.|.+ +...+
T Consensus 301 ~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V 380 (677)
T COG1200 301 LLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKV 380 (677)
T ss_pred HHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcce
Confidence 4445555667889999999987777766666553 55899999999999999999999999999999965 57899
Q ss_pred CCCCccEEEE
Q 008956 327 DIKDIRVVVN 336 (547)
Q Consensus 327 Dip~v~~VI~ 336 (547)
++.++-.||.
T Consensus 381 ~F~~LgLVIi 390 (677)
T COG1200 381 EFHNLGLVII 390 (677)
T ss_pred eecceeEEEE
Confidence 9999988874
No 452
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.33 E-value=2.2 Score=48.89 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
+..+++.+|+|+|||..+-
T Consensus 347 ~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3568889999999997543
No 453
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=90.28 E-value=0.49 Score=51.69 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=28.6
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
+.+.+++|+||+---+|...+..+.+.+..+.+++-+++.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 45678899999998888777777777666665444444433
No 454
>PHA00350 putative assembly protein
Probab=90.26 E-value=3 Score=43.34 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=17.1
Q ss_pred EEEEcCCCchHHHHHHH-HHHHHhhh
Q 008956 58 IVAIAKTGSGKTLGYLL-PGFIHLKR 82 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~-~~l~~l~~ 82 (547)
.++.+.+|||||+.++. .++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 46789999999987664 34444433
No 455
>PRK08840 replicative DNA helicase; Provisional
Probab=90.26 E-value=2.3 Score=45.43 Aligned_cols=131 Identities=15% Similarity=0.022 Sum_probs=62.3
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 008956 38 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 117 (547)
Q Consensus 38 ~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~ 117 (547)
+.+.++.--..+.-+..+.-+++.|.||.|||..++-.+...... .+..++|.+.- .-..|+...+-....
T Consensus 200 i~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~------~~~~v~~fSlE-Ms~~ql~~Rlla~~s-- 270 (464)
T PRK08840 200 VDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD------QDKPVLIFSLE-MPAEQLMMRMLASLS-- 270 (464)
T ss_pred cCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh------CCCeEEEEecc-CCHHHHHHHHHHhhC--
Confidence 333333333444334445567778999999997554333333221 14467777653 445555555433221
Q ss_pred ceEEEEecCCCCChhhHHH-------hhCCCcEEEE-----CcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 118 RISCTCLYGGAPKGPQLKD-------IDRGVDIVVA-----TPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 118 ~i~~~~~~g~~~~~~~~~~-------~~~~~~IlV~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
++....+..+.-..+.+.. +.....+.|- |...+...+.+-......+++||||=.|.|.
T Consensus 271 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 271 RVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 1221112222222223322 2223345553 2333433332211112347899999999764
No 456
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.16 E-value=0.46 Score=43.78 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=29.1
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCC-ceEEEEecc
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR-RQTLMYTAT 204 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~-~q~l~~SAT 204 (547)
.+.+++++||...-+|......+..++..+... .++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 567899999999988876666666666554333 566665544
No 457
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.93 E-value=0.93 Score=44.66 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHhC-C-CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 42 TPIQAQSWPIALQ-S-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 42 ~~~Q~~~i~~il~-g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
.+.|.+.+..++. . ..+++.++||||||+. +..++..+.. ....++.+-...|+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~~------~~~~iitiEdp~E~ 120 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELNT------PEKNIITVEDPVEY 120 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhCC------CCCeEEEECCCcee
Confidence 4456666655544 3 3578899999999964 3434444322 12356666555443
No 458
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=89.89 E-value=1 Score=44.14 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~ 74 (547)
.++++.+|+|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 4689999999999975443
No 459
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.87 E-value=1.7 Score=45.19 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCchHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~ 71 (547)
.|+.+++.+|+|+|||+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 578899999999999974
No 460
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.76 E-value=0.16 Score=53.09 Aligned_cols=48 Identities=25% Similarity=0.466 Sum_probs=37.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
++++.|+||+|||.++++|.+... ...+||+-|.-++........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~---------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW---------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC---------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999888865431 348999999999998877666554
No 461
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=89.65 E-value=0.3 Score=52.45 Aligned_cols=50 Identities=28% Similarity=0.490 Sum_probs=39.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
.++++.|+||||||..+++|.+.. . ...+||.-|--||...+...+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~-------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y-------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c-------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 369999999999999999997643 1 2378999999999888777666654
No 462
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.58 E-value=1.2 Score=42.23 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=29.3
Q ss_pred CcHHHHHHHhcCCcCCCCeeEEEEecccccc-cC----CcHHHHHHHHHhCCC-CceEEEEeccC
Q 008956 147 TPGRLNDILEMRRISLNQVSYLVLDEADRML-DM----GFEPQIRKIVKEVPA-RRQTLMYTATW 205 (547)
Q Consensus 147 Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll-~~----g~~~~i~~i~~~l~~-~~q~l~~SAT~ 205 (547)
+...+.+.+...... -+|||||+|.+. .. .+...+..++..+.. ....+.++++-
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 334455555433222 589999999988 21 244555566655322 33445566664
No 463
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=89.52 E-value=1.5 Score=45.75 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=20.8
Q ss_pred HHHhCCCcEEEEcCCCchHHHHHHH
Q 008956 50 PIALQSRDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 50 ~~il~g~~vlv~a~TGsGKT~~~l~ 74 (547)
+.+..+.|++..+|+|+|||..|..
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHH
Confidence 6667788999999999999976553
No 464
>PRK08006 replicative DNA helicase; Provisional
Probab=89.45 E-value=3 Score=44.67 Aligned_cols=114 Identities=18% Similarity=0.068 Sum_probs=56.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 134 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 134 (547)
+.-+++.|.||.|||..++-.+...... .+..++|.+.- .-..|+...+-... .++....+..+.-..+.+
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~------~g~~V~~fSlE-M~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~e~ 294 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAML------QDKPVLIFSLE-MPGEQIMMRMLASL--SRVDQTRIRTGQLDDEDW 294 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHHH
Confidence 4456778999999997555444333222 14467777653 44455555543322 112222122222222333
Q ss_pred HH-------hhCCCcEEEE-----CcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 135 KD-------IDRGVDIVVA-----TPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 135 ~~-------~~~~~~IlV~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
.. +.....+.|- |+..+...+.+-......+++||||=.|.|.
T Consensus 295 ~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 295 ARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 22 2133455553 3444443332211112357899999999764
No 465
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=89.45 E-value=3.4 Score=45.55 Aligned_cols=126 Identities=13% Similarity=0.168 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--------CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 25 FPPELLREVHNAGFSSPTPIQAQSWPIAL--------QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 25 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--------~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
++-.-.+.+-.....-+-.+-.++++.+. +|.=+++++|+|.|||-
T Consensus 312 ~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTS-------------------------- 365 (782)
T COG0466 312 LDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTS-------------------------- 365 (782)
T ss_pred hhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchh--------------------------
Confidence 33333444444455566666666666543 12335557999999993
Q ss_pred cCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccc
Q 008956 97 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 176 (547)
Q Consensus 97 ~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~l 176 (547)
|+..+++.+.+-+ +-...||......++--++ -.+=+-|+++..-+.+..... -+++|||+|.|
T Consensus 366 -----LgkSIA~al~Rkf------vR~sLGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~~N---Pv~LLDEIDKm 429 (782)
T COG0466 366 -----LGKSIAKALGRKF------VRISLGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGVKN---PVFLLDEIDKM 429 (782)
T ss_pred -----HHHHHHHHhCCCE------EEEecCccccHHHhccccc--cccccCChHHHHHHHHhCCcC---CeEEeechhhc
Confidence 3333343332211 2234455554444332221 245567999988777554432 37999999998
Q ss_pred ccCCcHHHHHHHHHhC
Q 008956 177 LDMGFEPQIRKIVKEV 192 (547)
Q Consensus 177 l~~g~~~~i~~i~~~l 192 (547)
...-....-..+++-|
T Consensus 430 ~ss~rGDPaSALLEVL 445 (782)
T COG0466 430 GSSFRGDPASALLEVL 445 (782)
T ss_pred cCCCCCChHHHHHhhc
Confidence 8654344444445444
No 466
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=89.35 E-value=0.74 Score=46.93 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+++.+|+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 468999999999997544
No 467
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.30 E-value=4.8 Score=43.75 Aligned_cols=124 Identities=14% Similarity=0.164 Sum_probs=75.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHH----HHHhccCCceEEEEecCCCCCh
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDE----AVKFGKSSRISCTCLYGGAPKG 131 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~----~~~~~~~~~i~~~~~~g~~~~~ 131 (547)
|-.+..-|=--|||. |++|++..+...-. +-++.|++.-+..++-+.++ +++|++...+ + ...
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s~~----gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v-i-~~k------ 269 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKNII----GISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT-I-ENK------ 269 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHhhc----CceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce-e-eec------
Confidence 445555699999995 57777777665222 56999999998776665555 4455543322 1 111
Q ss_pred hhHHHhhCCCcEEEECcHHH-----HHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhC-CCCceEEEEecc
Q 008956 132 PQLKDIDRGVDIVVATPGRL-----NDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARRQTLMYTAT 204 (547)
Q Consensus 132 ~~~~~~~~~~~IlV~Tp~~L-----~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l-~~~~q~l~~SAT 204 (547)
+..|.+.-|+.= ........+.-++++++++||||-+. ...+..|+..+ .+++++|..|.|
T Consensus 270 --------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 270 --------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred --------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 112333333211 11122334556789999999999652 34566666654 356788888877
No 468
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.29 E-value=2.4 Score=41.90 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=17.0
Q ss_pred HHHHhCC---CcEEEEcCCCchHHHH
Q 008956 49 WPIALQS---RDIVAIAKTGSGKTLG 71 (547)
Q Consensus 49 i~~il~g---~~vlv~a~TGsGKT~~ 71 (547)
++.+.+. +++++.+++|+|||+.
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 4444433 5789999999999963
No 469
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.22 E-value=2.8 Score=42.76 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=32.9
Q ss_pred CCeeEEEEecccccccCC--cHHHHHHHHHhCCCCceEEEEeccCcHH
Q 008956 163 NQVSYLVLDEADRMLDMG--FEPQIRKIVKEVPARRQTLMYTATWPRE 208 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g--~~~~i~~i~~~l~~~~q~l~~SAT~~~~ 208 (547)
...-+||+|-|+.+-|++ .-+.+.++.+.++...-.+.+|+++.+.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 456689999999998887 2344555555666666678889987643
No 470
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.20 E-value=0.56 Score=51.58 Aligned_cols=79 Identities=25% Similarity=0.486 Sum_probs=60.4
Q ss_pred HHHhhcCCCcEEEEccccccCCCCCCccEE--------EEcCCCCChhhhHhhhccccCCCCc-eEEEEEe-c--CCChH
Q 008956 305 LNQFRAGRSPVLVATDVAARGLDIKDIRVV--------VNYDFPTGVEDYVHRIGRTGRAGAT-GVAYTFF-G--DQDSR 372 (547)
Q Consensus 305 l~~F~~g~~~ILVaT~~~~~GiDip~v~~V--------I~~d~p~s~~~yiQriGR~gR~g~~-g~~~~l~-~--~~~~~ 372 (547)
-+.|-+|+..|-|-+.+++-||.+..-..| |.+.+|||...-||..|||.|..+- +.-|+|+ + ..+..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 357889999999999999999999865544 4578999999999999999998753 3334443 3 35667
Q ss_pred HHHHHHHHHHH
Q 008956 373 YASDLIKLLEG 383 (547)
Q Consensus 373 ~~~~l~~~l~~ 383 (547)
++.-+.+.|+.
T Consensus 930 FAS~VAKRLES 940 (1300)
T KOG1513|consen 930 FASIVAKRLES 940 (1300)
T ss_pred HHHHHHHHHHh
Confidence 77777777763
No 471
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.18 E-value=1.5 Score=45.79 Aligned_cols=52 Identities=23% Similarity=0.230 Sum_probs=29.1
Q ss_pred CCeeEEEEecccccccCC--------cHHHHHHHHHh----CCCCceEEEEeccC-cHHHHHHHH
Q 008956 163 NQVSYLVLDEADRMLDMG--------FEPQIRKIVKE----VPARRQTLMYTATW-PREVRKIAA 214 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g--------~~~~i~~i~~~----l~~~~q~l~~SAT~-~~~~~~~~~ 214 (547)
.+..++++||+|.++..- .....+.++.. ...+-+++++.||- |.++.+-+.
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~ 308 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAAR 308 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHH
Confidence 356788899999876421 11122223222 33455789999994 444444443
No 472
>PRK10436 hypothetical protein; Provisional
Probab=89.14 E-value=1.1 Score=47.71 Aligned_cols=35 Identities=37% Similarity=0.428 Sum_probs=21.8
Q ss_pred HHHHHHHHhC--CCcEEEEcCCCchHHHHHHHHHHHHh
Q 008956 45 QAQSWPIALQ--SRDIVAIAKTGSGKTLGYLLPGFIHL 80 (547)
Q Consensus 45 Q~~~i~~il~--g~~vlv~a~TGsGKT~~~l~~~l~~l 80 (547)
|.+.+..++. ..-+|+++|||||||+. +..++..+
T Consensus 206 ~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 206 QLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 3344434433 34588899999999975 34455554
No 473
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=1.1 Score=45.44 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=32.7
Q ss_pred cCCccCCCCHHHHHHHHHCCCCCCcHHHHHHH----HHHhCCCcEEEEcCCCchHHHHHH
Q 008956 18 MSFDATGFPPELLREVHNAGFSSPTPIQAQSW----PIALQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i----~~il~g~~vlv~a~TGsGKT~~~l 73 (547)
.+|++++=-+.+.++++..=. .|.|.--+ ..+..-+.+++.+|+|+|||+.+-
T Consensus 89 v~f~DIggLe~v~~~L~e~Vi---lPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVI---LPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred eehhhccchHHHHHHHHHHHh---hcccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence 578888877777777764321 22222111 112234689999999999997554
No 474
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.97 E-value=1.4 Score=47.05 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=22.6
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEE
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMY 201 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~ 201 (547)
....+|||||+|.|.... ...+.+.++..+....+|+.
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEE
Confidence 567899999999875332 23344455554444444443
No 475
>PRK05748 replicative DNA helicase; Provisional
Probab=88.95 E-value=2 Score=45.88 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=54.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 134 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 134 (547)
+.-++|.|.||.|||..++--+...... .+..++|++. .+-..|+...+...... +....+..+.-....+
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~------~g~~v~~fSl-Ems~~~l~~R~l~~~~~--v~~~~i~~~~l~~~e~ 273 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATK------TDKNVAIFSL-EMGAESLVMRMLCAEGN--IDAQRLRTGQLTDDDW 273 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHh------CCCeEEEEeC-CCCHHHHHHHHHHHhcC--CCHHHhhcCCCCHHHH
Confidence 4557888999999997555433332221 1446777654 34445555554322111 1111111122222222
Q ss_pred H-------HhhCCCcEEEE-----CcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 135 K-------DIDRGVDIVVA-----TPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 135 ~-------~~~~~~~IlV~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
. .+. ...+.|. |++.+...+.+-.....++++||||=.+.|.
T Consensus 274 ~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 274 PKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 2 222 2345553 3344444333211111257899999999774
No 476
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.90 E-value=0.43 Score=48.76 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHH
Q 008956 56 RDIVAIAKTGSGKTLG 71 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~ 71 (547)
+|++..+|+|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999964
No 477
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=88.68 E-value=2.7 Score=43.32 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=62.0
Q ss_pred HHHHHHhCC-----CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEE
Q 008956 47 QSWPIALQS-----RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISC 121 (547)
Q Consensus 47 ~~i~~il~g-----~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~ 121 (547)
.-++.++-| .-+++-+++|.||++..|- +...+.. ..++|||+-- |-..||.-.+.++....
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQ-va~~lA~-------~~~vLYVsGE-ES~~QiklRA~RL~~~~---- 146 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQ-VAARLAK-------RGKVLYVSGE-ESLQQIKLRADRLGLPT---- 146 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHH-HHHHHHh-------cCcEEEEeCC-cCHHHHHHHHHHhCCCc----
Confidence 335555554 4567779999999975443 3333332 2289999875 77889999988886432
Q ss_pred EEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccC
Q 008956 122 TCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 179 (547)
Q Consensus 122 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~ 179 (547)
.++.+...-.+.+++. .+.-.+.+++|||-++.|...
T Consensus 147 -------------------~~l~l~aEt~~e~I~~--~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 147 -------------------NNLYLLAETNLEDIIA--ELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred -------------------cceEEehhcCHHHHHH--HHHhcCCCEEEEeccceeecc
Confidence 1344444333433333 222356789999999987643
No 478
>PRK05636 replicative DNA helicase; Provisional
Probab=88.66 E-value=1.9 Score=46.53 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=52.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 135 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 135 (547)
.-+++.|.||.|||..++-.+...... .+..++|.+. ..-..|+...+-... .++....+..+.-..+.+.
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~------~g~~v~~fSl-EMs~~ql~~R~ls~~--s~v~~~~i~~g~l~~~e~~ 336 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIK------HNKASVIFSL-EMSKSEIVMRLLSAE--AEVRLSDMRGGKMDEDAWE 336 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEEe-eCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHH
Confidence 446778999999997555333332222 1346777633 233344443332221 1222222222222233332
Q ss_pred Hhh------CCCcEEEE-----CcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 136 DID------RGVDIVVA-----TPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 136 ~~~------~~~~IlV~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
.+. ....+.|- |...+...+.+... -..+++||||=.|.|.
T Consensus 337 ~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 337 KLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 211 22445553 22333332222111 1357899999999774
No 479
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.64 E-value=2.5 Score=43.33 Aligned_cols=17 Identities=24% Similarity=0.116 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
.+|+.+|+|+|||..+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997654
No 480
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.64 E-value=2.1 Score=47.55 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=25.6
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
+....++||||||.|... -...+.+.++..+.... +.+.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~ti-fIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAI-FILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeE-EEEEeC
Confidence 457889999999988543 23345555666555443 444444
No 481
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=88.63 E-value=1 Score=46.14 Aligned_cols=63 Identities=22% Similarity=0.202 Sum_probs=40.2
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 30 LREVHNAGFSSPTPIQAQSWPIALQ-SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 30 ~~~l~~~g~~~~~~~Q~~~i~~il~-g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
++.+...|+ +++.+.+.+..+.+ +++++++++||+|||.. +..++..+.. ..+++++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~~-------~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVAP-------DERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCCC-------CCcEEEECCccee
Confidence 555555554 45677777766554 56899999999999963 3322222211 2367777777776
No 482
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=88.59 E-value=2.1 Score=44.38 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
.+.+++.+|+|+|||+.+
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999754
No 483
>PRK13764 ATPase; Provisional
Probab=88.55 E-value=0.98 Score=49.55 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=26.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
..++++++++||||||+. +.+++..+.. .+..++.+--.+|+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~~------~~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYAD------MGKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh------CCCEEEEECCCccc
Confidence 357899999999999964 4444444432 13344455555555
No 484
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.55 E-value=3.1 Score=42.48 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=83.1
Q ss_pred CCCCCcHHHHHHHHHHhC-------------C-Cc-EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEE-EEEcCcH
Q 008956 37 GFSSPTPIQAQSWPIALQ-------------S-RD-IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTV-LVLSPTR 100 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~-------------g-~~-vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~v-Lil~Ptr 100 (547)
|+..-+-+|...+..+.. + .+ +++++=-|+|||+++.-.+..+-.+ +.++ ||.+.|-
T Consensus 68 G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkk-------G~K~~LvcaDTF 140 (483)
T KOG0780|consen 68 GVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKK-------GYKVALVCADTF 140 (483)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhc-------CCceeEEeeccc
Confidence 444445667766665542 1 23 5567889999998765544444333 4454 5554441
Q ss_pred HHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCC
Q 008956 101 ELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 180 (547)
Q Consensus 101 ~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g 180 (547)
-.-..++++.+....++.+...|...+. +.|+. +-+ . .+.-.++++||+|-+-|.-...
T Consensus 141 --RagAfDQLkqnA~k~~iP~ygsyte~dp------------v~ia~-egv----~--~fKke~fdvIIvDTSGRh~qe~ 199 (483)
T KOG0780|consen 141 --RAGAFDQLKQNATKARVPFYGSYTEADP------------VKIAS-EGV----D--RFKKENFDVIIVDTSGRHKQEA 199 (483)
T ss_pred --ccchHHHHHHHhHhhCCeeEecccccch------------HHHHH-HHH----H--HHHhcCCcEEEEeCCCchhhhH
Confidence 1122334444443333433332222211 11110 001 1 2234568889999887754332
Q ss_pred -cHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh
Q 008956 181 -FEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 181 -~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~ 216 (547)
.-.++..+.+.+.++.-++.+-|++-...+..++.|
T Consensus 200 sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 200 SLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 345667777888888888889999887777666655
No 485
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.55 E-value=1.9 Score=47.28 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=14.9
Q ss_pred cEEEEcCCCchHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~ 74 (547)
-.|+.+|.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986654
No 486
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.53 E-value=0.95 Score=45.75 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=38.7
Q ss_pred CCCCcHHHHHH-HHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 38 FSSPTPIQAQS-WPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 38 ~~~~~~~Q~~~-i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
+..+.+.|..- |-++..+++++++++||||||. .+.+++..+-. ..+++.+--|.|+
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip~-------~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIPP-------EERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCCc-------hhcEEEEeccccc
Confidence 34556666555 4556667899999999999995 45555555433 3367777777665
No 487
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.34 E-value=2.8 Score=45.10 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=22.9
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
.....++||||||.|....+ ..+.+.++..+... ++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCe-EEEEEEC
Confidence 35678999999997753322 33344444444333 3333334
No 488
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.26 E-value=1 Score=41.73 Aligned_cols=32 Identities=34% Similarity=0.426 Sum_probs=24.9
Q ss_pred CCcHHHHHHHHHHhC-CCcEEEEcCCCchHHHH
Q 008956 40 SPTPIQAQSWPIALQ-SRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~-g~~vlv~a~TGsGKT~~ 71 (547)
.+++.|.+.+...+. +..++++++||||||+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 456777777766554 67889999999999974
No 489
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=88.23 E-value=1.7 Score=42.84 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=35.7
Q ss_pred CeeEEEEecccccccCCcHHHHHHHHHhCCC-------CceEEEEeccCcHHHHHHHHHhcCC
Q 008956 164 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPA-------RRQTLMYTATWPREVRKIAADLLVN 219 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~-------~~q~l~~SAT~~~~~~~~~~~~l~~ 219 (547)
.-+++|+||+|.|- .+....+.-.+...+. +.-.|++|.+...++.+++.++..+
T Consensus 178 ~rslFIFDE~DKmp-~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~ 239 (344)
T KOG2170|consen 178 QRSLFIFDEVDKLP-PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARN 239 (344)
T ss_pred CCceEEechhhhcC-HhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHHc
Confidence 34679999999863 2334444444554332 3457889999888887777666543
No 490
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=88.17 E-value=0.36 Score=53.12 Aligned_cols=50 Identities=26% Similarity=0.361 Sum_probs=41.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
.++++.||||||||..+++|-+... +..+||+=|.-|+...+....++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~---------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW---------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC---------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4689999999999999999977653 2379999999999988887776653
No 491
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=88.15 E-value=3.7 Score=41.88 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEec
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 203 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SA 203 (547)
....+++||||||+|-.. -...+.+.++.-|+...+++.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 356789999999997543 34456666666666665555443
No 492
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.03 E-value=0.64 Score=45.88 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=29.2
Q ss_pred HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 52 ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 52 il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
+..+.+++++++||||||.. +..++..+... ..+++++-.+.|+
T Consensus 124 v~~~~~ili~G~tGSGKTT~-l~all~~i~~~------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTL-LNALLEEIPPE------DERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT------TSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccchH-HHHHhhhcccc------ccceEEeccccce
Confidence 34567899999999999964 44444444331 2477888777665
No 493
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.02 E-value=1.5 Score=47.30 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHhCC-C-cEEEEcCCCchHHHHHHHHHHHHh
Q 008956 42 TPIQAQSWPIALQS-R-DIVAIAKTGSGKTLGYLLPGFIHL 80 (547)
Q Consensus 42 ~~~Q~~~i~~il~g-~-~vlv~a~TGsGKT~~~l~~~l~~l 80 (547)
.+.|.+.+..++.. + -+++++|||||||+. +..++..+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 34455555555543 3 367889999999975 33344443
No 494
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.02 E-value=2.7 Score=44.66 Aligned_cols=112 Identities=17% Similarity=0.084 Sum_probs=54.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 134 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 134 (547)
|.-++|.|+||+|||..++-.+...... .+..+++++.- .-..|+...+...... +....+..+.-....+
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~------~g~~vl~~SlE-m~~~~i~~R~~~~~~~--v~~~~~~~g~l~~~~~ 265 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK------EGKPVAFFSLE-MSAEQLAMRMLSSESR--VDSQKLRTGKLSDEDW 265 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh------CCCeEEEEeCc-CCHHHHHHHHHHHhcC--CCHHHhccCCCCHHHH
Confidence 4457888999999997555433333322 14467777653 3444555444333221 1111111111122222
Q ss_pred -------HHhhCCCcEEEE-----CcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 135 -------KDIDRGVDIVVA-----TPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 135 -------~~~~~~~~IlV~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
..+.. ..+.|. |++.+...+..-.. -..+++||||=.+.|.
T Consensus 266 ~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 266 EKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 12222 344442 33444443332111 1247899999998764
No 495
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.90 E-value=2.2 Score=44.14 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCchHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~ 71 (547)
.|+..+|.+|.|+|||+.
T Consensus 168 kGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred cCceEEEeCCCCCChhHH
Confidence 578899999999999964
No 496
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=87.85 E-value=1.1 Score=47.58 Aligned_cols=147 Identities=20% Similarity=0.234 Sum_probs=74.7
Q ss_pred HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHH-HHHHHHHhccCCce-------EEEE
Q 008956 52 ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQ-IQDEAVKFGKSSRI-------SCTC 123 (547)
Q Consensus 52 il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q-~~~~~~~~~~~~~i-------~~~~ 123 (547)
+.+|..+-|.++||||||+...+ +... -.+..|...+==.|..++-+| +.+.+.-+.....+ +...
T Consensus 361 l~~GEkvAIlG~SGsGKSTllqL--l~~~----~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~l 434 (573)
T COG4987 361 LAQGEKVAILGRSGSGKSTLLQL--LAGA----WDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRL 434 (573)
T ss_pred ecCCCeEEEECCCCCCHHHHHHH--HHhc----cCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhh
Confidence 45788999999999999975433 2211 112223333333444444444 22222111111000 1111
Q ss_pred ecCCCCChhhHHHhhC-C-CcEEEECcHHHHHHHhcCC---------------cCCCCeeEEEEecccccccCCcHHHHH
Q 008956 124 LYGGAPKGPQLKDIDR-G-VDIVVATPGRLNDILEMRR---------------ISLNQVSYLVLDEADRMLDMGFEPQIR 186 (547)
Q Consensus 124 ~~g~~~~~~~~~~~~~-~-~~IlV~Tp~~L~~~l~~~~---------------~~l~~~~~lVlDEaH~ll~~g~~~~i~ 186 (547)
...+...++.+..++. + .+.+-.-|+.|...+.... +.+.+-.++++||--.=+|.--+.++.
T Consensus 435 A~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL 514 (573)
T COG4987 435 ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL 514 (573)
T ss_pred cCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHH
Confidence 1122233333333332 1 3455555666655553322 125567899999999888877777766
Q ss_pred HHHHhCCCCceEEEEecc
Q 008956 187 KIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 187 ~i~~~l~~~~q~l~~SAT 204 (547)
..+...-..+-+++.|--
T Consensus 515 ~ll~~~~~~kTll~vTHr 532 (573)
T COG4987 515 ALLFEHAEGKTLLMVTHR 532 (573)
T ss_pred HHHHHHhcCCeEEEEecc
Confidence 665554445556665544
No 497
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=87.85 E-value=3.1 Score=40.18 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=30.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcc-----CCCCCCCEEEEEc---CcHHHHHHHHHHHH
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCR-----NDPRLGPTVLVLS---PTRELATQIQDEAV 111 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~-----~~~~~~~~vLil~---Ptr~L~~Q~~~~~~ 111 (547)
.++.++.|+|||..++-.++....-.. .....+.+|||++ |..++...+.....
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 578899999999866654444321100 0111245788888 44445444444333
No 498
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.80 E-value=3.6 Score=44.88 Aligned_cols=57 Identities=28% Similarity=0.349 Sum_probs=34.7
Q ss_pred CCCCccCCccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 008956 13 VPPPFMSFDATGFPPELLREVHNA---GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 13 ~p~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~ 72 (547)
++-|-.+|++.+=-+++-..|+.. ....|-.+.+.. +-.-+.||+.+|+|+|||+.+
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 344667899988656666666532 222222222222 122378999999999999754
No 499
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=87.75 E-value=1.1 Score=44.10 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
.++.+++.+++|+|||...+-.++..+.. +.++++++-. +...++.+.+..+...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-------ge~vlyvs~~-e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE-------GEPVLYVSTE-ESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc-------CCcEEEEEec-CCHHHHHHHHHHcCCC
No 500
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.71 E-value=6.3 Score=44.26 Aligned_cols=125 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHhC-------CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCC-----------CCCCEEEEEcCc----HHH
Q 008956 45 QAQSWPIALQ-------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDP-----------RLGPTVLVLSPT----REL 102 (547)
Q Consensus 45 Q~~~i~~il~-------g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~-----------~~~~~vLil~Pt----r~L 102 (547)
|..++..+.. .+-.|+.+|.|+|||.++.+.+-.......... ...+-++.+-+. ..-
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~ 102 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDE 102 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHH
Q ss_pred HHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcH
Q 008956 103 ATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 182 (547)
Q Consensus 103 ~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~ 182 (547)
+.++.+.+.........++ +||||||.|... -.
T Consensus 103 IReLie~~~~~P~~g~~KV----------------------------------------------~IIDEa~~LT~~-A~ 135 (725)
T PRK07133 103 IRELIENVKNLPTQSKYKI----------------------------------------------YIIDEVHMLSKS-AF 135 (725)
T ss_pred HHHHHHHHHhchhcCCCEE----------------------------------------------EEEEChhhCCHH-HH
Q ss_pred HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh
Q 008956 183 PQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 183 ~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~ 216 (547)
..+.+.++..|....+|+.+.-+..-...+..+.
T Consensus 136 NALLKtLEEPP~~tifILaTte~~KLl~TI~SRc 169 (725)
T PRK07133 136 NALLKTLEEPPKHVIFILATTEVHKIPLTILSRV 169 (725)
T ss_pred HHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhc
Done!