Query 008956
Match_columns 547
No_of_seqs 328 out of 2284
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 15:32:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.7E-65 6E-70 541.9 48.0 387 5-395 43-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.1E-60 3.7E-65 502.4 47.0 391 6-398 3-412 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 6E-57 2.1E-61 473.1 38.5 370 14-390 33-404 (410)
4 1s2m_A Putative ATP-dependent 100.0 1.5E-55 5E-60 460.9 39.5 373 12-392 15-388 (400)
5 3eiq_A Eukaryotic initiation f 100.0 8.1E-56 2.8E-60 464.6 35.5 378 11-395 33-413 (414)
6 1xti_A Probable ATP-dependent 100.0 6.1E-54 2.1E-58 446.9 39.7 368 18-391 8-380 (391)
7 1hv8_A Putative ATP-dependent 100.0 2.2E-53 7.5E-58 438.3 42.1 358 17-388 5-364 (367)
8 3sqw_A ATP-dependent RNA helic 100.0 4.4E-54 1.5E-58 471.1 38.7 356 25-380 28-409 (579)
9 3i5x_A ATP-dependent RNA helic 100.0 9.9E-54 3.4E-58 467.2 37.4 357 25-381 79-461 (563)
10 3pey_A ATP-dependent RNA helic 100.0 1.6E-52 5.4E-57 436.2 43.1 356 15-381 2-369 (395)
11 1fuu_A Yeast initiation factor 100.0 1E-54 3.5E-59 453.0 23.6 375 12-394 15-391 (394)
12 3fht_A ATP-dependent RNA helic 100.0 1.9E-52 6.6E-57 438.5 41.0 366 15-390 22-401 (412)
13 2z0m_A 337AA long hypothetical 100.0 2.7E-51 9.3E-56 417.8 39.7 335 25-382 1-335 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 4E-53 1.4E-57 453.3 22.9 374 6-389 77-467 (479)
15 2v1x_A ATP-dependent DNA helic 100.0 3.6E-49 1.2E-53 430.0 34.8 344 16-377 17-382 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 1.8E-48 6E-53 420.1 34.5 341 17-379 1-353 (523)
17 3fho_A ATP-dependent RNA helic 100.0 4.2E-50 1.4E-54 432.4 20.1 368 12-390 113-492 (508)
18 3oiy_A Reverse gyrase helicase 100.0 2.9E-48 9.9E-53 407.9 27.0 325 28-382 9-376 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 2.4E-46 8.4E-51 407.5 28.8 332 36-371 3-510 (556)
20 3tbk_A RIG-I helicase domain; 100.0 2.5E-45 8.5E-50 399.2 29.4 333 39-377 3-515 (555)
21 2zj8_A DNA helicase, putative 100.0 1.1E-44 3.8E-49 406.2 32.9 335 19-370 2-388 (720)
22 2ykg_A Probable ATP-dependent 100.0 6.8E-46 2.3E-50 415.2 22.2 340 30-373 3-520 (696)
23 2va8_A SSO2462, SKI2-type heli 100.0 3E-44 1E-48 402.7 35.5 337 16-370 6-409 (715)
24 2p6r_A Afuhel308 helicase; pro 100.0 1.1E-44 3.7E-49 405.3 28.4 334 19-370 2-389 (702)
25 3l9o_A ATP-dependent RNA helic 100.0 1.7E-44 5.9E-49 416.7 29.8 328 19-369 163-597 (1108)
26 1tf5_A Preprotein translocase 100.0 8.8E-45 3E-49 396.5 25.4 323 35-371 79-547 (844)
27 4a2q_A RIG-I, retinoic acid in 100.0 2.4E-44 8.4E-49 407.5 29.1 333 35-371 243-751 (797)
28 1wp9_A ATP-dependent RNA helic 100.0 1.6E-42 5.4E-47 369.7 34.6 323 40-371 9-477 (494)
29 4a2w_A RIG-I, retinoic acid in 100.0 3.6E-43 1.2E-47 402.4 27.4 333 35-371 243-751 (936)
30 2xgj_A ATP-dependent RNA helic 100.0 6.7E-42 2.3E-46 391.9 37.4 310 36-369 83-499 (1010)
31 1gm5_A RECG; helicase, replica 100.0 4.8E-43 1.7E-47 389.8 25.4 347 28-400 356-727 (780)
32 4ddu_A Reverse gyrase; topoiso 100.0 8.1E-43 2.8E-47 402.6 27.8 318 35-382 74-503 (1104)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 2.9E-43 9.9E-48 406.5 22.3 336 19-383 31-468 (1054)
34 2fsf_A Preprotein translocase 100.0 2.1E-42 7.2E-47 376.7 24.3 319 37-371 72-585 (853)
35 4gl2_A Interferon-induced heli 100.0 2.9E-42 9.9E-47 386.1 24.7 325 39-368 6-517 (699)
36 2eyq_A TRCF, transcription-rep 100.0 4.5E-41 1.6E-45 390.4 34.9 322 23-369 586-922 (1151)
37 1nkt_A Preprotein translocase 100.0 4.6E-41 1.6E-45 366.4 28.1 324 35-372 107-620 (922)
38 4a4z_A Antiviral helicase SKI2 100.0 4.7E-40 1.6E-44 376.7 33.0 305 40-366 39-489 (997)
39 2oca_A DAR protein, ATP-depend 100.0 4.7E-40 1.6E-44 354.7 25.0 328 23-367 89-453 (510)
40 4f92_B U5 small nuclear ribonu 100.0 9.8E-39 3.3E-43 380.8 34.9 340 25-377 911-1316(1724)
41 2whx_A Serine protease/ntpase/ 100.0 7.6E-41 2.6E-45 365.5 13.5 315 23-383 155-495 (618)
42 4f92_B U5 small nuclear ribonu 100.0 3.6E-39 1.2E-43 384.6 27.3 332 37-377 76-481 (1724)
43 2fwr_A DNA repair protein RAD2 100.0 8.8E-40 3E-44 349.2 18.1 293 40-368 93-453 (472)
44 3fe2_A Probable ATP-dependent 100.0 4.5E-38 1.5E-42 306.0 25.6 224 5-228 16-240 (242)
45 2jlq_A Serine protease subunit 100.0 3.1E-39 1.1E-43 342.2 18.4 286 37-368 1-310 (451)
46 1yks_A Genome polyprotein [con 100.0 5.1E-40 1.7E-44 346.9 6.2 286 51-389 4-322 (440)
47 2wv9_A Flavivirin protease NS2 100.0 9.7E-39 3.3E-43 351.1 15.2 304 32-381 202-548 (673)
48 2xau_A PRE-mRNA-splicing facto 100.0 9.1E-38 3.1E-42 349.4 21.8 332 15-369 69-443 (773)
49 3o8b_A HCV NS3 protease/helica 100.0 1.1E-38 3.9E-43 345.7 13.8 279 39-373 216-518 (666)
50 3h1t_A Type I site-specific re 100.0 5.4E-37 1.8E-41 336.6 21.9 314 40-368 178-557 (590)
51 3iuy_A Probable ATP-dependent 100.0 1.8E-36 6.2E-41 291.8 22.5 223 1-224 1-227 (228)
52 1wrb_A DJVLGB; RNA helicase, D 100.0 1.9E-36 6.6E-41 296.4 21.4 224 6-229 9-243 (253)
53 2z83_A Helicase/nucleoside tri 100.0 7.5E-37 2.6E-41 324.5 16.2 272 49-369 15-313 (459)
54 3bor_A Human initiation factor 100.0 1.7E-35 5.9E-40 286.8 22.9 213 9-225 21-234 (237)
55 2v6i_A RNA helicase; membrane, 100.0 4.3E-36 1.5E-40 316.2 18.5 268 54-366 1-288 (431)
56 1z63_A Helicase of the SNF2/RA 100.0 8.1E-35 2.8E-39 313.0 28.0 322 39-382 36-464 (500)
57 2oxc_A Probable ATP-dependent 100.0 4.3E-35 1.5E-39 282.6 22.9 213 8-225 14-228 (230)
58 3dmq_A RNA polymerase-associat 100.0 9.4E-36 3.2E-40 341.6 21.4 332 39-381 152-625 (968)
59 2pl3_A Probable ATP-dependent 100.0 1.2E-34 4.2E-39 280.5 24.8 212 14-226 21-233 (236)
60 1vec_A ATP-dependent RNA helic 100.0 1.8E-34 6E-39 273.2 25.1 202 18-223 3-205 (206)
61 3ber_A Probable ATP-dependent 100.0 7.6E-35 2.6E-39 284.3 23.1 206 16-225 41-247 (249)
62 1q0u_A Bstdead; DEAD protein, 100.0 4.2E-35 1.4E-39 280.5 20.6 207 17-227 3-213 (219)
63 1qde_A EIF4A, translation init 100.0 1.6E-34 5.5E-39 277.3 23.6 213 10-227 6-218 (224)
64 3fmo_B ATP-dependent RNA helic 100.0 1.5E-34 5E-39 289.8 23.9 215 5-226 76-298 (300)
65 3dkp_A Probable ATP-dependent 100.0 7.8E-35 2.7E-39 283.5 20.9 221 5-228 12-243 (245)
66 2gxq_A Heat resistant RNA depe 100.0 6.3E-34 2.2E-38 269.5 25.0 204 19-225 2-205 (207)
67 3ly5_A ATP-dependent RNA helic 100.0 2.9E-34 9.8E-39 282.4 21.8 203 19-221 53-258 (262)
68 1t6n_A Probable ATP-dependent 100.0 1.3E-33 4.4E-38 270.3 22.1 207 14-224 10-219 (220)
69 3rc3_A ATP-dependent RNA helic 100.0 1.3E-33 4.6E-38 309.4 23.8 273 49-366 149-442 (677)
70 1z3i_X Similar to RAD54-like; 100.0 4.3E-32 1.5E-36 299.4 34.7 322 40-369 55-528 (644)
71 3mwy_W Chromo domain-containin 100.0 4.3E-32 1.5E-36 306.6 29.2 329 39-381 235-694 (800)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1E-31 3.5E-36 306.2 25.0 312 39-367 270-707 (1038)
73 3jux_A Protein translocase sub 100.0 1.2E-30 4.3E-35 278.7 29.2 319 37-372 73-590 (822)
74 1c4o_A DNA nucleotide excision 100.0 3.6E-27 1.2E-31 260.0 27.4 174 194-378 379-559 (664)
75 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.4E-27 4.8E-32 221.9 18.7 167 232-398 15-182 (185)
76 2p6n_A ATP-dependent RNA helic 100.0 1.8E-27 6.1E-32 222.2 18.3 178 215-396 10-189 (191)
77 2ipc_A Preprotein translocase 100.0 3.5E-26 1.2E-30 248.6 30.7 131 35-177 75-215 (997)
78 2d7d_A Uvrabc system protein B 99.9 2.9E-26 9.8E-31 252.7 25.4 174 194-378 385-565 (661)
79 2hjv_A ATP-dependent RNA helic 99.9 1.9E-25 6.4E-30 203.2 19.4 151 234-385 7-158 (163)
80 1fuk_A Eukaryotic initiation f 99.9 8.1E-26 2.8E-30 206.1 14.8 156 236-392 3-160 (165)
81 1t5i_A C_terminal domain of A 99.9 1.3E-25 4.4E-30 206.2 16.1 159 235-394 4-164 (172)
82 2rb4_A ATP-dependent RNA helic 99.9 8.4E-25 2.9E-29 201.3 18.5 153 235-388 6-166 (175)
83 3eaq_A Heat resistant RNA depe 99.9 5.1E-24 1.8E-28 202.2 17.7 147 237-384 6-153 (212)
84 3b6e_A Interferon-induced heli 99.9 1.6E-24 5.3E-29 205.9 13.4 169 34-204 27-216 (216)
85 3i32_A Heat resistant RNA depe 99.9 1.7E-23 5.7E-28 208.3 18.0 145 237-382 3-148 (300)
86 2vl7_A XPD; helicase, unknown 99.9 1.4E-23 4.9E-28 226.7 18.4 102 262-368 383-520 (540)
87 2yjt_D ATP-dependent RNA helic 99.8 8.1E-25 2.8E-29 200.5 0.0 148 237-385 4-153 (170)
88 1rif_A DAR protein, DNA helica 99.9 1.8E-22 6E-27 200.4 14.2 156 39-210 112-267 (282)
89 3crv_A XPD/RAD3 related DNA he 99.9 2.1E-20 7.1E-25 202.6 30.7 309 40-368 3-530 (551)
90 3llm_A ATP-dependent RNA helic 99.9 1.4E-21 4.9E-26 188.5 11.9 162 37-209 58-222 (235)
91 2fz4_A DNA repair protein RAD2 99.8 3.1E-19 1.1E-23 172.2 16.9 139 40-209 93-232 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 3.6E-18 1.2E-22 186.7 23.1 103 263-368 448-583 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 1.6E-18 5.4E-23 170.3 13.1 126 244-369 92-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 4.1E-09 1.4E-13 114.9 13.3 146 42-204 151-298 (608)
95 3upu_A ATP-dependent DNA helic 98.5 2.1E-06 7.2E-11 90.4 15.7 137 33-202 18-162 (459)
96 3e1s_A Exodeoxyribonuclease V, 98.4 2.6E-06 8.8E-11 92.0 13.3 127 39-203 188-314 (574)
97 2gk6_A Regulator of nonsense t 98.3 5.7E-06 1.9E-10 90.5 15.5 69 39-113 179-247 (624)
98 4b3f_X DNA-binding protein smu 98.3 2E-06 6.8E-11 94.6 11.2 69 39-114 188-257 (646)
99 2xzl_A ATP-dependent helicase 98.3 9E-06 3.1E-10 91.1 15.6 69 39-113 359-427 (802)
100 2wjy_A Regulator of nonsense t 98.1 1.9E-05 6.5E-10 88.3 14.9 69 39-113 355-423 (800)
101 3lfu_A DNA helicase II; SF1 he 98.1 0.00011 3.6E-09 80.8 18.3 72 39-115 8-79 (647)
102 3hgt_A HDA1 complex subunit 3; 97.8 0.00015 5.2E-09 71.4 12.6 121 245-370 106-238 (328)
103 2o0j_A Terminase, DNA packagin 97.3 0.0023 8E-08 65.0 13.7 70 40-114 163-232 (385)
104 3ec2_A DNA replication protein 97.3 0.00098 3.3E-08 60.2 9.5 32 42-73 16-56 (180)
105 3vkw_A Replicase large subunit 97.1 0.0013 4.5E-08 67.7 9.7 107 57-204 163-269 (446)
106 3cpe_A Terminase, DNA packagin 97.0 0.007 2.4E-07 65.5 14.4 72 40-116 163-234 (592)
107 1xx6_A Thymidine kinase; NESG, 97.0 0.00081 2.8E-08 61.5 5.6 39 55-100 8-46 (191)
108 2orw_A Thymidine kinase; TMTK, 96.9 0.0017 5.9E-08 59.0 7.6 39 55-100 3-41 (184)
109 2j9r_A Thymidine kinase; TK1, 96.7 0.001 3.5E-08 61.6 4.4 38 56-100 29-66 (214)
110 2b8t_A Thymidine kinase; deoxy 96.7 0.0022 7.4E-08 60.2 6.1 90 55-176 12-101 (223)
111 1pjr_A PCRA; DNA repair, DNA r 96.7 0.0042 1.4E-07 69.0 9.4 71 39-114 10-80 (724)
112 3te6_A Regulatory protein SIR3 96.4 0.031 1.1E-06 55.2 13.0 20 55-74 45-64 (318)
113 2zpa_A Uncharacterized protein 96.4 0.0066 2.2E-07 65.7 8.6 112 40-205 175-288 (671)
114 2kjq_A DNAA-related protein; s 96.4 0.0015 5.2E-08 57.2 2.9 18 54-71 35-52 (149)
115 2orv_A Thymidine kinase; TP4A 96.1 0.0042 1.4E-07 58.1 4.6 39 55-100 19-57 (234)
116 1l8q_A Chromosomal replication 96.1 0.019 6.5E-07 56.9 9.7 19 55-73 37-55 (324)
117 1uaa_A REP helicase, protein ( 96.1 0.0088 3E-07 65.8 7.7 71 40-115 2-72 (673)
118 2w58_A DNAI, primosome compone 96.1 0.029 1E-06 51.2 10.1 18 56-73 55-72 (202)
119 3kl4_A SRP54, signal recogniti 96.0 0.026 8.7E-07 58.2 10.3 54 163-216 178-234 (433)
120 2v1u_A Cell division control p 96.0 0.041 1.4E-06 55.4 11.8 19 55-73 44-62 (387)
121 2p65_A Hypothetical protein PF 96.0 0.029 1E-06 49.9 9.5 19 55-73 43-61 (187)
122 1d2n_A N-ethylmaleimide-sensit 96.0 0.034 1.2E-06 53.5 10.5 18 56-73 65-82 (272)
123 3e2i_A Thymidine kinase; Zn-bi 95.9 0.004 1.4E-07 57.6 3.4 39 55-100 28-66 (219)
124 1g5t_A COB(I)alamin adenosyltr 95.9 0.026 9.1E-07 51.3 8.8 140 55-213 28-171 (196)
125 2chg_A Replication factor C sm 95.9 0.082 2.8E-06 48.3 12.5 41 163-204 101-141 (226)
126 1a5t_A Delta prime, HOLB; zinc 95.9 0.019 6.5E-07 57.3 8.5 34 41-74 3-43 (334)
127 1w4r_A Thymidine kinase; type 95.7 0.0052 1.8E-07 55.9 3.1 38 55-99 20-57 (195)
128 1jbk_A CLPB protein; beta barr 95.6 0.16 5.3E-06 45.1 12.9 18 56-73 44-61 (195)
129 2qby_B CDC6 homolog 3, cell di 95.4 0.061 2.1E-06 54.3 10.1 18 56-73 46-63 (384)
130 3h4m_A Proteasome-activating n 95.2 0.049 1.7E-06 52.6 8.6 54 16-72 12-68 (285)
131 3u61_B DNA polymerase accessor 95.2 0.061 2.1E-06 53.1 9.2 42 163-204 104-145 (324)
132 3bos_A Putative DNA replicatio 95.2 0.032 1.1E-06 52.0 6.8 20 54-73 51-70 (242)
133 3u4q_A ATP-dependent helicase/ 95.1 0.033 1.1E-06 65.5 8.0 73 39-114 9-81 (1232)
134 3n70_A Transport activator; si 95.1 0.064 2.2E-06 46.2 7.9 22 52-73 21-42 (145)
135 3eie_A Vacuolar protein sortin 95.0 0.12 4E-06 51.1 10.9 52 16-73 13-69 (322)
136 2qgz_A Helicase loader, putati 95.0 0.019 6.4E-07 56.7 4.8 19 55-73 152-170 (308)
137 1fnn_A CDC6P, cell division co 94.9 0.038 1.3E-06 55.8 6.8 16 57-72 46-61 (389)
138 3dm5_A SRP54, signal recogniti 94.8 0.1 3.4E-06 53.8 9.8 53 164-216 182-235 (443)
139 2z4s_A Chromosomal replication 94.8 0.1 3.4E-06 54.1 9.8 44 164-207 194-239 (440)
140 2qby_A CDC6 homolog 1, cell di 94.8 0.1 3.5E-06 52.4 9.7 19 55-73 45-63 (386)
141 2dr3_A UPF0273 protein PH0284; 94.7 0.087 3E-06 49.4 8.6 52 54-113 22-73 (247)
142 3syl_A Protein CBBX; photosynt 94.6 0.074 2.5E-06 51.9 8.0 18 56-73 68-85 (309)
143 3cf0_A Transitional endoplasmi 94.5 0.23 7.7E-06 48.5 11.2 55 16-73 10-67 (301)
144 4b4t_J 26S protease regulatory 94.4 0.28 9.6E-06 49.8 11.8 55 16-73 143-200 (405)
145 4b4t_M 26S protease regulatory 94.4 0.12 4.2E-06 53.1 9.2 55 15-72 175-232 (434)
146 2qz4_A Paraplegin; AAA+, SPG7, 94.2 0.7 2.4E-05 43.5 13.8 53 18-73 3-57 (262)
147 1gm5_A RECG; helicase, replica 94.1 0.13 4.5E-06 57.1 9.4 77 262-338 416-498 (780)
148 1sxj_D Activator 1 41 kDa subu 94.0 0.28 9.7E-06 48.6 10.9 40 163-203 132-171 (353)
149 1iqp_A RFCS; clamp loader, ext 94.0 0.18 6.3E-06 49.3 9.4 40 163-203 109-148 (327)
150 3co5_A Putative two-component 93.9 0.059 2E-06 46.3 5.0 21 51-71 23-43 (143)
151 2w0m_A SSO2452; RECA, SSPF, un 93.9 0.2 6.9E-06 46.3 9.0 21 54-74 22-42 (235)
152 3pfi_A Holliday junction ATP-d 93.8 0.43 1.5E-05 47.1 11.8 18 56-73 56-73 (338)
153 1sxj_E Activator 1 40 kDa subu 93.8 0.25 8.6E-06 49.1 10.1 43 163-206 133-175 (354)
154 1njg_A DNA polymerase III subu 93.7 0.58 2E-05 42.9 12.0 39 164-203 126-164 (250)
155 3uk6_A RUVB-like 2; hexameric 93.6 0.52 1.8E-05 47.0 12.2 18 56-73 71-88 (368)
156 1xwi_A SKD1 protein; VPS4B, AA 93.1 0.79 2.7E-05 45.1 12.3 52 16-73 7-63 (322)
157 3oiy_A Reverse gyrase helicase 92.8 0.34 1.2E-05 49.3 9.4 79 260-339 61-148 (414)
158 1jr3_A DNA polymerase III subu 92.7 0.38 1.3E-05 48.0 9.6 39 163-202 118-156 (373)
159 3vfd_A Spastin; ATPase, microt 92.7 0.22 7.5E-06 50.6 7.7 19 55-73 148-166 (389)
160 2fna_A Conserved hypothetical 92.6 3.3 0.00011 40.5 16.4 38 165-204 138-178 (357)
161 4b4t_H 26S protease regulatory 92.6 0.63 2.2E-05 48.0 10.9 54 16-72 204-260 (467)
162 4b4t_L 26S protease subunit RP 92.6 0.38 1.3E-05 49.5 9.3 55 16-73 176-233 (437)
163 4b4t_I 26S protease regulatory 92.5 0.55 1.9E-05 48.0 10.2 55 16-73 177-234 (437)
164 1sxj_B Activator 1 37 kDa subu 92.5 0.28 9.5E-06 47.9 8.0 39 164-203 107-145 (323)
165 3d8b_A Fidgetin-like protein 1 92.4 0.94 3.2E-05 45.3 11.8 19 55-73 117-135 (357)
166 4b4t_K 26S protease regulatory 92.3 0.54 1.9E-05 48.2 10.0 55 16-73 167-224 (428)
167 2gno_A DNA polymerase III, gam 92.2 0.71 2.4E-05 45.1 10.4 39 163-202 81-119 (305)
168 1w5s_A Origin recognition comp 92.2 0.22 7.4E-06 50.6 7.0 18 56-73 51-70 (412)
169 3pvs_A Replication-associated 92.2 0.12 4.1E-06 53.7 5.0 18 56-73 51-68 (447)
170 1sxj_C Activator 1 40 kDa subu 92.2 0.63 2.2E-05 46.1 10.2 39 163-202 109-147 (340)
171 2bjv_A PSP operon transcriptio 92.1 0.22 7.7E-06 47.4 6.6 20 53-72 27-46 (265)
172 1xp8_A RECA protein, recombina 92.1 0.31 1.1E-05 49.1 7.8 45 48-99 61-111 (366)
173 2zr9_A Protein RECA, recombina 92.0 0.085 2.9E-06 52.9 3.6 38 55-99 61-98 (349)
174 2qp9_X Vacuolar protein sortin 91.9 0.78 2.7E-05 45.8 10.6 18 56-73 85-102 (355)
175 2r6a_A DNAB helicase, replicat 91.9 0.41 1.4E-05 49.7 8.7 39 54-98 202-240 (454)
176 2q6t_A DNAB replication FORK h 91.9 0.28 9.7E-06 50.7 7.4 38 55-98 200-237 (444)
177 3cmu_A Protein RECA, recombina 91.7 0.13 4.3E-06 62.5 5.0 44 49-99 1415-1464(2050)
178 3hjh_A Transcription-repair-co 91.5 0.71 2.4E-05 48.2 10.0 53 54-116 13-65 (483)
179 2zan_A Vacuolar protein sortin 91.4 2 6.9E-05 44.3 13.3 19 55-73 167-185 (444)
180 1n0w_A DNA repair protein RAD5 91.3 0.4 1.4E-05 44.6 7.3 22 54-75 23-44 (243)
181 1sxj_A Activator 1 95 kDa subu 91.2 0.49 1.7E-05 50.0 8.6 41 163-205 147-189 (516)
182 3hr8_A Protein RECA; alpha and 91.0 0.18 6.2E-06 50.5 4.7 46 48-100 48-99 (356)
183 2ehv_A Hypothetical protein PH 90.9 0.14 4.7E-06 48.1 3.6 43 163-205 134-181 (251)
184 4a1f_A DNAB helicase, replicat 90.6 0.22 7.7E-06 49.4 4.9 49 54-110 45-93 (338)
185 2eyq_A TRCF, transcription-rep 90.6 0.94 3.2E-05 52.7 10.9 77 260-336 649-731 (1151)
186 3hu3_A Transitional endoplasmi 90.2 0.36 1.2E-05 50.6 6.3 42 165-206 298-349 (489)
187 2cvh_A DNA repair and recombin 90.2 0.95 3.3E-05 41.2 8.7 35 54-98 19-53 (220)
188 3bh0_A DNAB-like replicative h 90.0 1.4 4.9E-05 43.0 10.3 51 53-111 66-116 (315)
189 1hqc_A RUVB; extended AAA-ATPa 90.0 1.2 4.2E-05 43.3 9.7 19 55-73 38-56 (324)
190 1ls1_A Signal recognition part 89.9 2.2 7.5E-05 41.3 11.3 51 163-213 179-230 (295)
191 1u94_A RECA protein, recombina 89.6 0.22 7.6E-06 49.9 4.0 37 55-98 63-99 (356)
192 2chq_A Replication factor C sm 89.6 0.54 1.9E-05 45.6 6.8 17 57-73 40-56 (319)
193 2px0_A Flagellar biosynthesis 89.3 1.4 4.7E-05 42.8 9.3 42 163-206 181-225 (296)
194 3t15_A Ribulose bisphosphate c 89.1 0.98 3.3E-05 43.7 8.1 18 56-73 37-54 (293)
195 1cr0_A DNA primase/helicase; R 89.0 0.4 1.4E-05 46.5 5.3 23 52-74 32-54 (296)
196 3bgw_A DNAB-like replicative h 88.9 0.4 1.4E-05 49.6 5.4 49 54-110 196-244 (444)
197 4ddu_A Reverse gyrase; topoiso 88.8 0.82 2.8E-05 52.9 8.4 79 260-339 118-205 (1104)
198 1qvr_A CLPB protein; coiled co 88.4 0.8 2.7E-05 51.6 7.8 18 56-73 192-209 (854)
199 2z43_A DNA repair and recombin 88.1 0.65 2.2E-05 45.7 6.1 58 55-113 107-165 (324)
200 3cmw_A Protein RECA, recombina 87.8 0.42 1.4E-05 57.2 5.2 121 56-209 1432-1571(1706)
201 3m6a_A ATP-dependent protease 87.1 0.79 2.7E-05 48.7 6.4 18 55-72 108-125 (543)
202 2i1q_A DNA repair and recombin 86.9 0.54 1.9E-05 46.2 4.8 22 56-77 99-120 (322)
203 1vma_A Cell division protein F 86.9 9.1 0.00031 37.1 13.5 18 57-74 106-123 (306)
204 2l8b_A Protein TRAI, DNA helic 86.8 0.68 2.3E-05 41.3 4.7 121 41-204 35-158 (189)
205 2p6n_A ATP-dependent RNA helic 86.8 2.5 8.5E-05 38.0 8.8 73 90-172 54-130 (191)
206 1nlf_A Regulatory protein REPA 86.7 1.4 4.8E-05 42.1 7.5 25 51-75 26-50 (279)
207 3io5_A Recombination and repai 86.7 1.3 4.4E-05 43.4 7.1 90 57-177 30-124 (333)
208 3cf2_A TER ATPase, transitiona 86.3 1.4 4.7E-05 48.9 7.9 56 16-72 472-528 (806)
209 3cf2_A TER ATPase, transitiona 86.2 1 3.4E-05 50.0 6.8 17 56-72 239-255 (806)
210 2hjv_A ATP-dependent RNA helic 86.1 1.7 5.9E-05 37.7 7.2 74 90-173 35-112 (163)
211 2ce7_A Cell division protein F 85.9 0.54 1.9E-05 49.0 4.2 52 16-72 11-66 (476)
212 1t6n_A Probable ATP-dependent 85.6 4 0.00014 37.0 9.8 72 263-337 82-165 (220)
213 1r6b_X CLPA protein; AAA+, N-t 85.4 4 0.00014 45.1 11.4 19 55-73 207-225 (758)
214 3cmu_A Protein RECA, recombina 85.4 1.1 3.7E-05 54.6 6.9 122 52-205 1078-1217(2050)
215 3lda_A DNA repair protein RAD5 84.8 3 0.0001 42.3 9.2 28 14-41 80-107 (400)
216 2jgn_A DBX, DDX3, ATP-dependen 84.6 2.4 8.1E-05 37.8 7.5 72 90-171 46-121 (185)
217 3pxi_A Negative regulator of g 84.1 3.9 0.00013 45.2 10.5 17 57-73 523-539 (758)
218 4a74_A DNA repair and recombin 83.7 2.1 7.2E-05 39.1 7.0 20 54-73 24-43 (231)
219 2j37_W Signal recognition part 83.6 3.2 0.00011 43.4 9.0 19 57-75 103-121 (504)
220 2ffh_A Protein (FFH); SRP54, s 83.3 6.9 0.00024 39.9 11.1 18 57-74 100-117 (425)
221 3ber_A Probable ATP-dependent 83.2 8.1 0.00028 36.0 11.0 73 261-337 109-193 (249)
222 1v5w_A DMC1, meiotic recombina 83.1 1.2 4.2E-05 44.2 5.3 57 56-113 123-180 (343)
223 1fuk_A Eukaryotic initiation f 83.0 4 0.00014 35.4 8.1 74 90-173 30-107 (165)
224 1t5i_A C_terminal domain of A 82.4 6.1 0.00021 34.5 9.2 75 90-174 31-109 (172)
225 2rb4_A ATP-dependent RNA helic 81.2 3.5 0.00012 36.1 7.1 73 90-172 34-110 (175)
226 1q57_A DNA primase/helicase; d 80.9 2.3 7.9E-05 44.5 6.7 50 54-110 241-290 (503)
227 1yks_A Genome polyprotein [con 80.6 2.6 8.8E-05 43.4 6.8 68 90-169 177-245 (440)
228 3fe2_A Probable ATP-dependent 80.4 7.8 0.00027 35.8 9.6 73 262-338 101-184 (242)
229 1ypw_A Transitional endoplasmi 80.3 5 0.00017 44.7 9.5 19 54-72 237-255 (806)
230 1xti_A Probable ATP-dependent 80.2 7.6 0.00026 38.5 10.1 72 262-336 75-158 (391)
231 3eaq_A Heat resistant RNA depe 80.1 4.7 0.00016 36.7 7.8 71 90-170 31-105 (212)
232 2i4i_A ATP-dependent RNA helic 80.1 7.9 0.00027 38.8 10.3 71 90-170 276-350 (417)
233 2eyu_A Twitching motility prot 79.6 1.1 3.7E-05 42.7 3.3 40 14-71 2-41 (261)
234 1e9r_A Conjugal transfer prote 79.4 1.9 6.4E-05 44.2 5.3 44 54-104 52-95 (437)
235 2oxc_A Probable ATP-dependent 78.8 5.5 0.00019 36.5 8.0 70 262-336 91-172 (230)
236 1pzn_A RAD51, DNA repair and r 78.8 2.1 7.3E-05 42.5 5.4 17 163-179 230-246 (349)
237 1vec_A ATP-dependent RNA helic 78.7 8.5 0.00029 34.3 9.1 71 262-336 70-152 (206)
238 1oyw_A RECQ helicase, ATP-depe 78.6 7.8 0.00027 40.7 9.9 58 263-320 65-123 (523)
239 2v1x_A ATP-dependent DNA helic 78.6 5.6 0.00019 42.5 8.9 58 263-320 84-144 (591)
240 2pk2_A Cyclin-T1, protein TAT; 78.4 1.7 5.7E-05 43.5 4.4 29 370-398 230-258 (358)
241 1j8m_F SRP54, signal recogniti 77.9 6.5 0.00022 38.0 8.4 18 57-74 100-117 (297)
242 3u4q_B ATP-dependent helicase/ 77.4 3.4 0.00012 48.2 7.2 39 58-100 4-42 (1166)
243 3cmw_A Protein RECA, recombina 77.3 1.4 4.8E-05 52.8 4.0 44 55-106 732-775 (1706)
244 2zts_A Putative uncharacterize 76.3 1.2 4.2E-05 41.3 2.6 51 55-112 30-80 (251)
245 2gxq_A Heat resistant RNA depe 76.1 9.7 0.00033 33.9 8.7 72 262-337 71-151 (207)
246 1wp9_A ATP-dependent RNA helic 76.1 7.9 0.00027 39.3 9.0 71 262-337 51-132 (494)
247 2oap_1 GSPE-2, type II secreti 75.5 2 6.8E-05 45.2 4.2 39 31-71 237-276 (511)
248 1tf7_A KAIC; homohexamer, hexa 75.4 6.1 0.00021 41.5 8.0 50 53-110 279-328 (525)
249 3e70_C DPA, signal recognition 75.4 11 0.00038 36.9 9.4 54 164-217 211-265 (328)
250 1gku_B Reverse gyrase, TOP-RG; 74.4 5.7 0.0002 45.7 8.0 74 261-336 97-181 (1054)
251 3jvv_A Twitching mobility prot 74.3 3.3 0.00011 41.3 5.3 18 54-71 122-139 (356)
252 3i5x_A ATP-dependent RNA helic 73.5 24 0.00082 37.0 12.2 78 90-174 339-420 (563)
253 3iuy_A Probable ATP-dependent 73.4 6.5 0.00022 35.9 6.8 71 262-336 93-173 (228)
254 1ofh_A ATP-dependent HSL prote 73.3 7.1 0.00024 37.3 7.4 19 55-73 50-68 (310)
255 3bor_A Human initiation factor 72.9 4.3 0.00015 37.5 5.5 72 262-336 97-179 (237)
256 2r8r_A Sensor protein; KDPD, P 72.4 3.7 0.00012 38.0 4.7 26 57-82 8-33 (228)
257 2d7d_A Uvrabc system protein B 72.3 76 0.0026 34.2 16.0 77 90-176 445-525 (661)
258 1qde_A EIF4A, translation init 72.1 6 0.00021 35.9 6.2 71 261-336 80-161 (224)
259 3hws_A ATP-dependent CLP prote 71.9 5.8 0.0002 39.3 6.5 20 54-73 50-69 (363)
260 3sqw_A ATP-dependent RNA helic 71.3 31 0.0011 36.4 12.5 78 90-174 288-369 (579)
261 1p9r_A General secretion pathw 71.3 5.4 0.00018 40.7 6.1 27 45-71 155-183 (418)
262 3i32_A Heat resistant RNA depe 71.2 7.5 0.00026 37.6 6.9 74 90-173 28-105 (300)
263 2pl3_A Probable ATP-dependent 70.8 9.7 0.00033 34.8 7.4 70 262-336 96-177 (236)
264 3ly5_A ATP-dependent RNA helic 70.4 19 0.00063 33.7 9.4 71 262-336 125-207 (262)
265 2yhs_A FTSY, cell division pro 70.3 16 0.00054 38.0 9.4 53 164-216 375-434 (503)
266 2xxa_A Signal recognition part 69.7 16 0.00055 37.3 9.3 20 57-76 102-121 (433)
267 1lv7_A FTSH; alpha/beta domain 69.6 7.1 0.00024 36.4 6.2 53 17-72 8-62 (257)
268 4ag6_A VIRB4 ATPase, type IV s 69.5 4.6 0.00016 40.6 5.2 41 54-101 34-74 (392)
269 3b85_A Phosphate starvation-in 69.4 4.4 0.00015 36.9 4.5 34 38-71 5-38 (208)
270 2wv9_A Flavivirin protease NS2 68.8 7.1 0.00024 42.5 6.7 68 90-169 410-478 (673)
271 3nbx_X ATPase RAVA; AAA+ ATPas 68.5 5.9 0.0002 41.4 5.8 36 37-72 23-58 (500)
272 1hv8_A Putative ATP-dependent 68.4 12 0.00041 36.5 7.9 74 90-173 238-315 (367)
273 2r44_A Uncharacterized protein 67.8 3.8 0.00013 40.0 4.0 26 47-72 38-63 (331)
274 1c4o_A DNA nucleotide excision 67.6 28 0.00097 37.6 11.2 77 90-176 439-519 (664)
275 3fht_A ATP-dependent RNA helic 67.2 13 0.00043 37.1 7.9 74 90-173 266-343 (412)
276 2oca_A DAR protein, ATP-depend 67.2 46 0.0016 34.3 12.6 75 92-175 349-427 (510)
277 1u0j_A DNA replication protein 66.3 12 0.0004 35.6 6.8 43 28-73 74-122 (267)
278 2db3_A ATP-dependent RNA helic 65.5 20 0.00069 36.3 9.1 70 92-171 302-375 (434)
279 3b9p_A CG5977-PA, isoform A; A 65.5 10 0.00036 36.0 6.6 55 16-73 16-72 (297)
280 1q0u_A Bstdead; DEAD protein, 65.2 5.4 0.00019 36.2 4.3 71 262-336 71-156 (219)
281 1sky_E F1-ATPase, F1-ATP synth 65.0 31 0.0011 35.5 10.2 23 51-73 147-169 (473)
282 3b5x_A Lipid A export ATP-bind 64.8 16 0.00054 38.9 8.4 42 162-204 496-537 (582)
283 3pey_A ATP-dependent RNA helic 64.8 18 0.00061 35.6 8.4 76 90-175 243-322 (395)
284 1wrb_A DJVLGB; RNA helicase, D 64.3 21 0.00073 32.9 8.4 71 263-337 100-181 (253)
285 2yjt_D ATP-dependent RNA helic 67.8 1.4 4.9E-05 38.6 0.0 73 90-172 30-106 (170)
286 1fuu_A Yeast initiation factor 63.1 23 0.00078 34.8 8.9 71 262-337 88-169 (394)
287 1kgd_A CASK, peripheral plasma 62.9 4.5 0.00015 35.6 3.1 18 54-71 4-21 (180)
288 1um8_A ATP-dependent CLP prote 62.9 15 0.0005 36.5 7.3 19 55-73 72-90 (376)
289 3p32_A Probable GTPase RV1496/ 62.7 55 0.0019 32.1 11.5 17 57-73 81-97 (355)
290 1ixz_A ATP-dependent metallopr 62.6 2.8 9.5E-05 39.2 1.8 55 15-72 10-66 (254)
291 3vaa_A Shikimate kinase, SK; s 61.9 4.8 0.00016 36.1 3.2 20 54-73 24-43 (199)
292 4f4c_A Multidrug resistance pr 61.4 3 0.0001 49.3 2.0 41 162-202 1233-1273(1321)
293 2j0s_A ATP-dependent RNA helic 61.1 21 0.00072 35.5 8.2 72 91-172 277-352 (410)
294 3a8t_A Adenylate isopentenyltr 61.1 4.4 0.00015 39.9 2.9 18 56-73 41-58 (339)
295 2x8a_A Nuclear valosin-contain 61.0 1.9 6.5E-05 41.2 0.3 53 16-71 5-60 (274)
296 2c9o_A RUVB-like 1; hexameric 60.9 7.9 0.00027 39.8 5.0 19 55-73 63-81 (456)
297 3trf_A Shikimate kinase, SK; a 60.8 5.1 0.00017 35.1 3.1 20 55-74 5-24 (185)
298 1s2m_A Putative ATP-dependent 60.7 23 0.00078 35.1 8.4 74 90-173 258-335 (400)
299 1qhx_A CPT, protein (chloramph 60.6 4.1 0.00014 35.5 2.4 18 55-72 3-20 (178)
300 2gza_A Type IV secretion syste 60.4 5.5 0.00019 39.7 3.6 21 51-71 171-191 (361)
301 4f4c_A Multidrug resistance pr 60.3 11 0.00039 44.4 6.7 40 162-201 570-609 (1321)
302 1ojl_A Transcriptional regulat 60.1 6 0.00021 38.3 3.7 19 54-72 24-42 (304)
303 1iy2_A ATP-dependent metallopr 60.1 3.2 0.00011 39.5 1.7 54 16-72 35-90 (278)
304 3iij_A Coilin-interacting nucl 59.8 4.4 0.00015 35.5 2.5 21 53-73 9-29 (180)
305 3lw7_A Adenylate kinase relate 59.5 4 0.00014 35.1 2.2 17 57-73 3-19 (179)
306 2qmh_A HPR kinase/phosphorylas 59.4 4.4 0.00015 36.8 2.3 19 55-73 34-52 (205)
307 3nwn_A Kinesin-like protein KI 59.4 5.8 0.0002 39.5 3.5 25 48-72 96-122 (359)
308 4a2p_A RIG-I, retinoic acid in 59.2 22 0.00076 36.9 8.3 71 263-337 55-137 (556)
309 2xau_A PRE-mRNA-splicing facto 59.1 23 0.0008 39.0 8.7 75 90-170 303-393 (773)
310 2v6i_A RNA helicase; membrane, 58.8 12 0.0004 38.2 5.8 67 90-168 171-238 (431)
311 3o8b_A HCV NS3 protease/helica 58.3 13 0.00046 40.1 6.3 66 90-169 396-461 (666)
312 2jlq_A Serine protease subunit 58.3 12 0.00041 38.3 5.9 68 90-169 188-256 (451)
313 3tau_A Guanylate kinase, GMP k 58.3 6 0.0002 35.8 3.2 19 54-72 7-25 (208)
314 3exa_A TRNA delta(2)-isopenten 58.1 5 0.00017 39.2 2.7 18 56-73 4-21 (322)
315 3pgw_S U1-70K; protein-RNA com 57.7 23 0.00077 36.2 7.8 10 332-341 103-112 (437)
316 1tue_A Replication protein E1; 57.6 5.3 0.00018 36.4 2.6 44 28-73 29-76 (212)
317 1w36_B RECB, exodeoxyribonucle 57.4 16 0.00055 42.5 7.3 57 56-112 17-78 (1180)
318 2ze6_A Isopentenyl transferase 57.3 5.6 0.00019 37.3 2.9 17 57-73 3-19 (253)
319 1bg2_A Kinesin; motor protein, 56.9 7 0.00024 38.3 3.5 25 47-71 68-94 (325)
320 1z6t_A APAF-1, apoptotic prote 56.6 26 0.00088 37.0 8.4 32 42-73 129-165 (591)
321 3foz_A TRNA delta(2)-isopenten 56.6 5.8 0.0002 38.6 2.8 17 57-73 12-28 (316)
322 2pt7_A CAG-ALFA; ATPase, prote 56.0 5.1 0.00018 39.4 2.4 19 52-70 168-186 (330)
323 1kht_A Adenylate kinase; phosp 55.8 5.4 0.00018 35.0 2.4 19 55-73 3-21 (192)
324 1zp6_A Hypothetical protein AT 55.6 5.1 0.00018 35.3 2.2 20 52-71 6-25 (191)
325 1y63_A LMAJ004144AAA protein; 55.4 7.4 0.00025 34.3 3.2 20 54-73 9-28 (184)
326 3fkq_A NTRC-like two-domain pr 55.3 18 0.00061 36.0 6.4 29 62-97 151-179 (373)
327 2j41_A Guanylate kinase; GMP, 55.3 7 0.00024 34.8 3.1 20 53-72 4-23 (207)
328 3t0q_A AGR253WP; kinesin, alph 54.8 8.4 0.00029 38.2 3.8 26 47-72 76-103 (349)
329 2nr8_A Kinesin-like protein KI 54.7 7.7 0.00026 38.6 3.5 24 48-71 95-120 (358)
330 2h58_A Kinesin-like protein KI 54.6 8 0.00027 38.0 3.6 26 47-72 71-98 (330)
331 1zu4_A FTSY; GTPase, signal re 54.4 11 0.00038 36.7 4.6 18 57-74 107-124 (320)
332 2zfi_A Kinesin-like protein KI 54.4 8 0.00027 38.6 3.5 25 47-71 80-106 (366)
333 1ly1_A Polynucleotide kinase; 54.2 5.6 0.00019 34.5 2.2 16 57-72 4-19 (181)
334 2qor_A Guanylate kinase; phosp 54.1 7.3 0.00025 34.9 3.0 20 53-72 10-29 (204)
335 1goj_A Kinesin, kinesin heavy 54.1 8.2 0.00028 38.3 3.5 24 48-71 72-97 (355)
336 1v8k_A Kinesin-like protein KI 54.1 8.8 0.0003 38.9 3.8 26 47-72 145-172 (410)
337 1t5c_A CENP-E protein, centrom 54.1 8 0.00027 38.3 3.5 25 48-72 69-95 (349)
338 3qf4_A ABC transporter, ATP-bi 54.1 12 0.0004 40.0 5.1 42 162-204 495-536 (587)
339 2vvg_A Kinesin-2; motor protei 54.0 8.3 0.00028 38.2 3.5 25 48-72 81-107 (350)
340 3dc4_A Kinesin-like protein NO 53.8 8.1 0.00028 38.2 3.4 24 48-71 86-111 (344)
341 3gbj_A KIF13B protein; kinesin 53.8 8 0.00028 38.4 3.4 26 47-72 83-110 (354)
342 4a14_A Kinesin, kinesin-like p 53.7 8.8 0.0003 37.9 3.7 25 48-72 75-101 (344)
343 1kag_A SKI, shikimate kinase I 53.6 8.4 0.00029 33.2 3.2 18 55-72 4-21 (173)
344 4etp_A Kinesin-like protein KA 53.6 9.6 0.00033 38.5 4.0 25 48-72 132-158 (403)
345 3lre_A Kinesin-like protein KI 53.4 8.4 0.00029 38.2 3.5 24 48-71 97-122 (355)
346 3ney_A 55 kDa erythrocyte memb 53.3 8.3 0.00028 34.8 3.2 19 53-71 17-35 (197)
347 3dkp_A Probable ATP-dependent 53.2 15 0.00052 33.7 5.2 73 262-337 97-182 (245)
348 1m7g_A Adenylylsulfate kinase; 53.1 9.5 0.00032 34.4 3.6 32 41-73 12-43 (211)
349 3b6u_A Kinesin-like protein KI 52.9 9 0.00031 38.3 3.6 25 47-71 92-118 (372)
350 1x88_A Kinesin-like protein KI 52.8 8 0.00027 38.5 3.3 25 47-71 79-105 (359)
351 1f9v_A Kinesin-like protein KA 52.7 8.5 0.00029 38.1 3.4 26 47-72 75-102 (347)
352 2y65_A Kinesin, kinesin heavy 52.7 9.4 0.00032 38.0 3.7 24 48-71 76-101 (365)
353 1lvg_A Guanylate kinase, GMP k 52.7 8.3 0.00029 34.5 3.1 18 54-71 3-20 (198)
354 3kb2_A SPBC2 prophage-derived 52.3 8.1 0.00028 33.1 2.9 17 57-73 3-19 (173)
355 2yvu_A Probable adenylyl-sulfa 52.1 14 0.00048 32.3 4.5 19 55-73 13-31 (186)
356 3tbk_A RIG-I helicase domain; 52.1 41 0.0014 34.7 9.0 76 90-171 389-477 (555)
357 3crm_A TRNA delta(2)-isopenten 51.7 7.6 0.00026 38.0 2.8 17 57-73 7-23 (323)
358 2whx_A Serine protease/ntpase/ 51.6 28 0.00095 37.3 7.5 68 90-169 355-423 (618)
359 2r2a_A Uncharacterized protein 51.5 9.3 0.00032 34.5 3.2 17 58-74 8-24 (199)
360 2wbe_C Bipolar kinesin KRP-130 51.4 8.3 0.00028 38.6 3.1 25 47-71 91-117 (373)
361 3tr0_A Guanylate kinase, GMP k 51.2 9.2 0.00031 34.0 3.2 19 54-72 6-24 (205)
362 2r62_A Cell division protease 51.1 5.2 0.00018 37.6 1.5 19 55-73 44-62 (268)
363 1nks_A Adenylate kinase; therm 51.0 20 0.0007 31.1 5.5 17 57-73 3-19 (194)
364 3nwj_A ATSK2; P loop, shikimat 50.8 10 0.00035 35.5 3.5 21 53-73 46-66 (250)
365 3eiq_A Eukaryotic initiation f 50.7 22 0.00076 35.3 6.3 72 262-336 107-189 (414)
366 2ewv_A Twitching motility prot 50.6 7.2 0.00025 39.0 2.6 19 53-71 134-152 (372)
367 2heh_A KIF2C protein; kinesin, 50.6 10 0.00036 38.0 3.7 25 48-72 126-152 (387)
368 2owm_A Nckin3-434, related to 50.2 10 0.00034 38.9 3.6 25 48-72 128-154 (443)
369 2v3c_C SRP54, signal recogniti 50.1 10 0.00036 38.7 3.7 20 57-76 101-120 (432)
370 1ex7_A Guanylate kinase; subst 49.8 7.9 0.00027 34.5 2.4 16 56-71 2-17 (186)
371 3cob_A Kinesin heavy chain-lik 49.8 8.6 0.00029 38.4 2.9 25 48-72 71-97 (369)
372 2ius_A DNA translocase FTSK; n 49.6 20 0.0007 37.4 5.8 19 55-73 167-185 (512)
373 4fcw_A Chaperone protein CLPB; 49.6 17 0.00057 34.7 5.0 18 56-73 48-65 (311)
374 3fmo_B ATP-dependent RNA helic 49.5 23 0.00078 34.0 5.9 68 264-338 163-243 (300)
375 3zq6_A Putative arsenical pump 49.5 15 0.00051 35.7 4.7 34 58-98 17-50 (324)
376 4gp7_A Metallophosphoesterase; 49.5 5.8 0.0002 34.6 1.5 19 54-72 8-26 (171)
377 3pxg_A Negative regulator of g 49.3 17 0.00059 37.4 5.3 19 55-73 201-219 (468)
378 1knq_A Gluconate kinase; ALFA/ 49.3 6.9 0.00024 33.9 1.9 18 55-72 8-25 (175)
379 1byi_A Dethiobiotin synthase; 49.2 18 0.00061 32.6 4.9 33 59-98 6-38 (224)
380 1z6g_A Guanylate kinase; struc 48.8 11 0.00039 34.2 3.4 19 53-71 21-39 (218)
381 4eun_A Thermoresistant glucoki 48.8 11 0.00036 33.7 3.2 19 54-72 28-46 (200)
382 3a00_A Guanylate kinase, GMP k 48.8 11 0.00038 33.1 3.3 16 56-71 2-17 (186)
383 2rep_A Kinesin-like protein KI 48.6 10 0.00036 37.9 3.3 24 48-71 107-132 (376)
384 3bs4_A Uncharacterized protein 48.6 18 0.00062 34.1 4.8 52 55-114 21-72 (260)
385 3d3q_A TRNA delta(2)-isopenten 48.5 9.3 0.00032 37.6 2.9 17 57-73 9-25 (340)
386 3u06_A Protein claret segregat 48.4 13 0.00043 37.8 3.9 26 47-72 129-156 (412)
387 1c9k_A COBU, adenosylcobinamid 48.3 8.7 0.0003 34.1 2.4 42 58-110 2-43 (180)
388 1rj9_A FTSY, signal recognitio 48.0 18 0.00063 34.9 5.0 18 55-72 102-119 (304)
389 3bfn_A Kinesin-like protein KI 47.8 9.2 0.00031 38.4 2.8 32 41-72 75-116 (388)
390 1znw_A Guanylate kinase, GMP k 47.5 12 0.0004 33.7 3.2 21 51-71 16-36 (207)
391 2rhm_A Putative kinase; P-loop 47.5 8.1 0.00028 33.9 2.1 18 56-73 6-23 (193)
392 3isl_A Purine catabolism prote 47.3 2.1E+02 0.0071 27.8 13.3 17 23-39 20-36 (416)
393 4akg_A Glutathione S-transfera 47.2 19 0.00066 45.4 6.0 49 25-74 890-942 (2695)
394 3gk5_A Uncharacterized rhodane 47.1 24 0.00083 27.9 4.8 45 253-297 45-90 (108)
395 3ug7_A Arsenical pump-driving 47.1 18 0.0006 35.7 4.7 33 58-97 29-61 (349)
396 1via_A Shikimate kinase; struc 46.9 12 0.0004 32.5 3.1 17 57-73 6-22 (175)
397 2woo_A ATPase GET3; tail-ancho 46.7 18 0.0006 35.4 4.6 33 58-97 22-54 (329)
398 1zuh_A Shikimate kinase; alpha 46.3 12 0.0004 32.2 2.9 18 56-73 8-25 (168)
399 1tev_A UMP-CMP kinase; ploop, 46.3 8 0.00027 34.0 1.9 18 56-73 4-21 (196)
400 3cm0_A Adenylate kinase; ATP-b 46.3 8.7 0.0003 33.6 2.1 19 55-73 4-22 (186)
401 1nij_A Hypothetical protein YJ 46.3 13 0.00043 36.2 3.5 14 58-71 7-20 (318)
402 3eph_A TRNA isopentenyltransfe 46.2 10 0.00035 38.3 2.8 18 57-74 4-21 (409)
403 1g41_A Heat shock protein HSLU 46.0 46 0.0016 34.0 7.7 18 55-72 50-67 (444)
404 4gl2_A Interferon-induced heli 45.9 7.4 0.00025 42.3 1.9 77 90-172 400-490 (699)
405 2dhr_A FTSH; AAA+ protein, hex 45.6 30 0.001 35.9 6.5 50 16-72 26-81 (499)
406 2iut_A DNA translocase FTSK; n 45.5 25 0.00086 37.1 5.8 26 55-80 214-239 (574)
407 3b9q_A Chloroplast SRP recepto 45.4 19 0.00064 34.8 4.5 16 57-72 102-117 (302)
408 3uie_A Adenylyl-sulfate kinase 45.3 11 0.00038 33.6 2.7 32 40-72 11-42 (200)
409 3kjh_A CO dehydrogenase/acetyl 45.2 19 0.00066 32.9 4.5 32 58-96 3-34 (254)
410 3t61_A Gluconokinase; PSI-biol 45.1 12 0.0004 33.4 2.9 18 56-73 19-36 (202)
411 1g8p_A Magnesium-chelatase 38 44.9 13 0.00045 36.1 3.4 19 55-73 45-63 (350)
412 1in4_A RUVB, holliday junction 44.7 12 0.00042 36.5 3.2 17 56-72 52-68 (334)
413 3mm4_A Histidine kinase homolo 44.7 1.6E+02 0.0055 25.7 12.4 127 53-205 18-161 (206)
414 4a2q_A RIG-I, retinoic acid in 44.3 46 0.0016 36.7 8.1 70 263-336 296-377 (797)
415 2z83_A Helicase/nucleoside tri 44.3 26 0.00088 35.9 5.7 68 90-169 190-258 (459)
416 1xjc_A MOBB protein homolog; s 44.3 25 0.00085 30.7 4.7 15 57-71 6-20 (169)
417 3sr0_A Adenylate kinase; phosp 44.2 15 0.00052 33.2 3.4 17 58-74 3-19 (206)
418 4a2w_A RIG-I, retinoic acid in 44.1 31 0.001 39.0 6.7 78 90-173 631-721 (936)
419 2bdt_A BH3686; alpha-beta prot 44.1 13 0.00044 32.7 2.9 16 57-72 4-19 (189)
420 2c95_A Adenylate kinase 1; tra 43.9 14 0.00049 32.3 3.2 20 54-73 8-27 (196)
421 3nnk_A Ureidoglycine-glyoxylat 43.8 1.9E+02 0.0065 28.1 12.1 15 22-36 21-35 (411)
422 1gvn_B Zeta; postsegregational 43.7 8.8 0.0003 36.8 1.8 16 57-72 35-50 (287)
423 1s96_A Guanylate kinase, GMP k 43.6 11 0.00038 34.4 2.5 19 53-71 14-32 (219)
424 1ihu_A Arsenical pump-driving 43.5 20 0.00067 38.2 4.7 35 56-97 9-43 (589)
425 1mdo_A ARNB aminotransferase; 43.3 93 0.0032 30.3 9.6 75 18-102 11-91 (393)
426 1e6c_A Shikimate kinase; phosp 43.1 15 0.00051 31.5 3.1 18 56-73 3-20 (173)
427 3k1j_A LON protease, ATP-depen 43.1 19 0.00065 38.5 4.6 26 47-72 52-77 (604)
428 1ry6_A Internal kinesin; kines 43.1 15 0.00051 36.5 3.4 22 51-72 78-102 (360)
429 3fb4_A Adenylate kinase; psych 43.0 13 0.00046 33.3 2.9 17 57-73 2-18 (216)
430 2iyv_A Shikimate kinase, SK; t 42.5 16 0.00055 31.8 3.3 18 56-73 3-20 (184)
431 2v54_A DTMP kinase, thymidylat 42.4 15 0.00053 32.4 3.2 19 54-72 3-21 (204)
432 3b6e_A Interferon-induced heli 42.3 16 0.00055 32.5 3.4 55 262-320 81-140 (216)
433 3f9v_A Minichromosome maintena 42.1 12 0.00042 39.9 2.9 15 57-71 329-343 (595)
434 3dl0_A Adenylate kinase; phosp 42.1 14 0.00048 33.2 2.9 17 57-73 2-18 (216)
435 3vkg_A Dynein heavy chain, cyt 42.0 41 0.0014 43.1 7.7 48 26-74 874-925 (3245)
436 1qf9_A UMP/CMP kinase, protein 41.8 14 0.00048 32.2 2.8 17 57-73 8-24 (194)
437 2plr_A DTMP kinase, probable t 41.7 10 0.00036 33.7 1.9 19 55-73 4-22 (213)
438 1hyq_A MIND, cell division inh 41.7 25 0.00084 32.6 4.7 32 59-97 7-38 (263)
439 3umf_A Adenylate kinase; rossm 41.6 17 0.00058 33.2 3.4 18 56-73 30-47 (217)
440 2pez_A Bifunctional 3'-phospho 41.6 11 0.00037 32.8 2.0 18 55-72 5-22 (179)
441 1g3q_A MIND ATPase, cell divis 41.6 22 0.00074 32.3 4.2 30 61-97 9-38 (237)
442 2ph1_A Nucleotide-binding prot 41.5 22 0.00074 33.2 4.2 30 61-97 25-54 (262)
443 3iqw_A Tail-anchored protein t 41.4 23 0.00078 34.7 4.5 35 57-98 18-52 (334)
444 3rc3_A ATP-dependent RNA helic 41.4 47 0.0016 36.0 7.3 73 93-176 323-401 (677)
445 1aky_A Adenylate kinase; ATP:A 41.3 16 0.00055 33.0 3.2 19 55-73 4-22 (220)
446 1f2t_A RAD50 ABC-ATPase; DNA d 41.2 19 0.00064 30.5 3.4 15 57-71 25-39 (149)
447 4anj_A Unconventional myosin-V 41.1 20 0.00069 40.8 4.5 58 17-74 97-163 (1052)
448 3kta_A Chromosome segregation 41.0 17 0.00057 31.6 3.1 15 57-71 28-42 (182)
449 1vt4_I APAF-1 related killer D 41.0 1.3E+02 0.0044 34.6 10.8 34 119-152 244-277 (1221)
450 3lnc_A Guanylate kinase, GMP k 40.9 10 0.00035 34.7 1.7 19 54-72 26-44 (231)
451 2pt5_A Shikimate kinase, SK; a 40.9 12 0.00041 32.0 2.2 17 57-73 2-18 (168)
452 2og2_A Putative signal recogni 40.7 24 0.00082 35.0 4.6 16 57-72 159-174 (359)
453 1zak_A Adenylate kinase; ATP:A 40.6 17 0.00057 32.9 3.2 18 56-73 6-23 (222)
454 1ukz_A Uridylate kinase; trans 40.6 12 0.00042 33.2 2.2 16 57-72 17-32 (203)
455 2cdn_A Adenylate kinase; phosp 40.5 15 0.00053 32.5 2.9 18 56-73 21-38 (201)
456 3tlx_A Adenylate kinase 2; str 40.5 18 0.00062 33.4 3.5 19 55-73 29-47 (243)
457 2r2a_A Uncharacterized protein 40.5 15 0.00052 33.0 2.8 39 165-204 88-132 (199)
458 2l6f_A Focal adhesion kinase 1 46.6 5.9 0.0002 35.5 0.0 11 273-283 67-77 (215)
459 2bwj_A Adenylate kinase 5; pho 40.4 15 0.00052 32.3 2.8 19 55-73 12-30 (199)
460 1cs1_A CGS, protein (cystathio 40.3 2.6E+02 0.009 27.0 13.6 105 52-177 64-179 (386)
461 1zd8_A GTP:AMP phosphotransfer 40.1 15 0.00051 33.4 2.8 18 55-72 7-24 (227)
462 4dzz_A Plasmid partitioning pr 40.0 20 0.00068 31.7 3.6 32 141-175 55-86 (206)
463 2ykg_A Probable ATP-dependent 40.0 22 0.00074 38.5 4.5 79 90-174 398-489 (696)
464 3jzl_A Putative cystathionine 39.8 41 0.0014 33.9 6.2 10 167-176 197-206 (409)
465 1nn5_A Similar to deoxythymidy 39.7 14 0.00047 33.0 2.4 20 54-73 8-27 (215)
466 3q9l_A Septum site-determining 39.7 24 0.00081 32.6 4.2 29 61-96 9-37 (260)
467 1jjv_A Dephospho-COA kinase; P 39.6 13 0.00044 33.2 2.2 15 58-72 5-19 (206)
468 2vli_A Antibiotic resistance p 39.5 11 0.00037 32.8 1.7 19 55-73 5-23 (183)
469 2woj_A ATPase GET3; tail-ancho 39.4 25 0.00087 34.7 4.5 34 58-98 21-56 (354)
470 2qt1_A Nicotinamide riboside k 39.3 8 0.00028 34.6 0.7 19 54-72 20-38 (207)
471 2f1r_A Molybdopterin-guanine d 39.3 13 0.00045 32.5 2.2 16 57-72 4-19 (171)
472 1ye8_A Protein THEP1, hypothet 39.2 17 0.00059 31.9 2.9 15 57-71 2-16 (178)
473 3h1t_A Type I site-specific re 39.1 46 0.0016 35.1 6.8 79 90-174 439-527 (590)
474 1ak2_A Adenylate kinase isoenz 38.9 18 0.00063 33.0 3.2 19 55-73 16-34 (233)
475 3qf7_A RAD50; ABC-ATPase, ATPa 38.8 19 0.00066 35.7 3.5 17 57-73 25-41 (365)
476 2pbr_A DTMP kinase, thymidylat 38.7 14 0.00046 32.4 2.2 16 58-73 3-18 (195)
477 2if2_A Dephospho-COA kinase; a 38.6 13 0.00045 33.0 2.1 16 57-72 3-18 (204)
478 2jaq_A Deoxyguanosine kinase; 38.6 17 0.00058 32.0 2.8 17 57-73 2-18 (205)
479 1cke_A CK, MSSA, protein (cyti 38.5 17 0.00058 32.8 2.9 18 56-73 6-23 (227)
480 1yrb_A ATP(GTP)binding protein 38.2 29 0.00099 32.0 4.5 17 58-74 17-33 (262)
481 2vhj_A Ntpase P4, P4; non- hyd 38.2 14 0.00048 36.1 2.3 22 54-75 122-143 (331)
482 2z0h_A DTMP kinase, thymidylat 38.2 14 0.00048 32.4 2.2 16 58-73 3-18 (197)
483 2wwf_A Thymidilate kinase, put 38.0 19 0.00065 32.0 3.1 20 54-73 9-28 (212)
484 1e4v_A Adenylate kinase; trans 37.6 18 0.0006 32.6 2.8 17 57-73 2-18 (214)
485 3asz_A Uridine kinase; cytidin 37.5 13 0.00045 33.2 1.9 18 55-72 6-23 (211)
486 2v9p_A Replication protein E1; 37.3 18 0.00062 35.0 2.9 18 54-71 125-142 (305)
487 2z0m_A 337AA long hypothetical 37.2 60 0.0021 30.8 6.9 69 263-336 56-135 (337)
488 3cio_A ETK, tyrosine-protein k 37.0 32 0.0011 33.0 4.7 33 57-96 106-139 (299)
489 3c8u_A Fructokinase; YP_612366 36.9 16 0.00054 32.8 2.4 17 55-71 22-38 (208)
490 3cwq_A Para family chromosome 36.9 33 0.0011 30.7 4.6 21 59-79 5-25 (209)
491 3pxi_A Negative regulator of g 36.7 23 0.00079 38.9 4.1 20 55-74 201-220 (758)
492 2i3b_A HCR-ntpase, human cance 36.7 22 0.00077 31.5 3.3 41 162-205 103-145 (189)
493 3tqc_A Pantothenate kinase; bi 36.5 53 0.0018 31.9 6.2 15 58-72 95-109 (321)
494 1rz3_A Hypothetical protein rb 36.4 35 0.0012 30.2 4.6 16 57-72 24-39 (201)
495 3g5j_A Putative ATP/GTP bindin 36.3 36 0.0012 27.6 4.4 44 255-298 80-126 (134)
496 3a4m_A L-seryl-tRNA(SEC) kinas 36.3 15 0.00052 34.4 2.2 18 56-73 5-22 (260)
497 2afh_E Nitrogenase iron protei 36.2 33 0.0011 32.4 4.6 23 58-80 5-27 (289)
498 3be4_A Adenylate kinase; malar 36.1 20 0.0007 32.3 3.0 18 56-73 6-23 (217)
499 3tif_A Uncharacterized ABC tra 35.9 15 0.00053 33.9 2.1 17 54-70 30-46 (235)
500 1cp2_A CP2, nitrogenase iron p 35.8 34 0.0012 31.8 4.6 32 58-96 4-35 (269)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-65 Score=541.93 Aligned_cols=387 Identities=43% Similarity=0.681 Sum_probs=354.6
Q ss_pred EEEEecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhcc
Q 008956 5 LLIFQGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCR 84 (547)
Q Consensus 5 ~~~~~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~ 84 (547)
.+.++|.++|+|+.+|++++|++.++++|..+||.+|||+|+++|+.++++++++++||||||||++|++|++..+....
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred C-CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCC
Q 008956 85 N-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLN 163 (547)
Q Consensus 85 ~-~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~ 163 (547)
. ....++++|||+||++|+.|+++++.++.....+++.+++|+.....+...+..+++|+|+||++|.+++....+.+.
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 2 122367999999999999999999999998888999999999998888888888999999999999999998888899
Q ss_pred CeeEEEEecccccccCCcHHHHHHHHHhC--CCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEE
Q 008956 164 QVSYLVLDEADRMLDMGFEPQIRKIVKEV--PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 241 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~~~i~~i~~~l--~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~ 241 (547)
++++|||||||+|++++|...+..++..+ +..+|+++||||+|..+..++..++.++..+.+..... ....+.+.+
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~--~~~~i~~~~ 280 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGG--ACSDVKQTI 280 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTC--CCTTEEEEE
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccc--cccccceEE
Confidence 99999999999999999999999999885 57899999999999999999999999998888765542 344577888
Q ss_pred EEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc
Q 008956 242 EVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 320 (547)
Q Consensus 242 ~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~ 320 (547)
..+....|...+.+++..... ++||||++++.++.+++.|.+. +.+..+||++++.+|+.+++.|++|+++|||||+
T Consensus 281 ~~~~~~~k~~~l~~~l~~~~~--~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 358 (434)
T 2db3_A 281 YEVNKYAKRSKLIEILSEQAD--GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS 358 (434)
T ss_dssp EECCGGGHHHHHHHHHHHCCT--TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG
T ss_pred EEeCcHHHHHHHHHHHHhCCC--CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch
Confidence 888888999999999987653 4999999999999999999865 8899999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEec-CCChHHHHHHHHHHHHhcccccHHHHHH
Q 008956 321 VAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDM 395 (547)
Q Consensus 321 ~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~-~~~~~~~~~l~~~l~~~~~~v~~~l~~l 395 (547)
++++|||+|++++||+||+|+++++|+||+||+||.|+.|.+++|++ ..+......+.+.++.+.+.+|.||.+|
T Consensus 359 v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 359 VASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999999999999999999 5678899999999999999999998764
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-60 Score=502.36 Aligned_cols=391 Identities=44% Similarity=0.730 Sum_probs=352.1
Q ss_pred EEEecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccC
Q 008956 6 LIFQGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN 85 (547)
Q Consensus 6 ~~~~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~ 85 (547)
|.+.|.++|+++.+|++++|++.+++.|..+||.+|+|+|.++|+.+++++++++++|||+|||++|++|++..+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999988765321
Q ss_pred C--------------CCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHH
Q 008956 86 D--------------PRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL 151 (547)
Q Consensus 86 ~--------------~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L 151 (547)
. ...++++|||+||++|+.|+++.+.++....++.+..++|+.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 11236899999999999999999999988888999999999988888888888899999999999
Q ss_pred HHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHh--CCC--CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCc
Q 008956 152 NDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE--VPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 227 (547)
Q Consensus 152 ~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~--l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~ 227 (547)
.+++....+.+.++++|||||||++++++|...+..++.. ++. ..|++++|||++..+..++..++.++..+.+..
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 9999988888899999999999999999999999999874 333 579999999999999999999998888776654
Q ss_pred ccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHH
Q 008956 228 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLN 306 (547)
Q Consensus 228 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~ 306 (547)
.. .....+.+.+.......+...+.++++....+.++||||++++.++.+++.|.+. +.+..+|+++++.+|..+++
T Consensus 243 ~~--~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (417)
T 2i4i_A 243 VG--STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320 (417)
T ss_dssp -----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CC--CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHH
Confidence 43 2344567777788888899999999998877789999999999999999999865 88999999999999999999
Q ss_pred HhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcc
Q 008956 307 QFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQ 386 (547)
Q Consensus 307 ~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~ 386 (547)
.|++|+.+|||||+++++|||+|++++||+|++|+++.+|+||+||+||.|++|.+++|+++.+......+.+.+....+
T Consensus 321 ~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 321 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHc
Q 008956 387 QVPRELRDMASR 398 (547)
Q Consensus 387 ~v~~~l~~l~~~ 398 (547)
.+|.++.+++..
T Consensus 401 ~~~~~l~~~~~~ 412 (417)
T 2i4i_A 401 EVPSWLENMAYE 412 (417)
T ss_dssp CCCHHHHHHHTC
T ss_pred cCCHHHHHHHHh
Confidence 999999999853
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6e-57 Score=473.09 Aligned_cols=370 Identities=32% Similarity=0.587 Sum_probs=329.5
Q ss_pred CCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEE
Q 008956 14 PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTV 93 (547)
Q Consensus 14 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~v 93 (547)
+++..+|++++|++.+++.|...||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++
T Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----~~~~~~ 108 (410)
T 2j0s_A 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ----VRETQA 108 (410)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT----SCSCCE
T ss_pred ccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc----cCCceE
Confidence 3556789999999999999999999999999999999999999999999999999999999998876431 125699
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecc
Q 008956 94 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 173 (547)
Q Consensus 94 Lil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEa 173 (547)
|||+||++|+.|+++++.++....++.+..++++.....+...+..+++|+|+||++|.+.+....+.+.++++||||||
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEa 188 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 188 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccH
Confidence 99999999999999999999988889999999999888888888888999999999999999988888899999999999
Q ss_pred cccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccc-hHHH
Q 008956 174 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMD-KHRR 252 (547)
Q Consensus 174 H~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~ 252 (547)
|++++++|...+..++..+++..|++++|||++..+.+++..++.++..+.+.... .....+.+.+....... +...
T Consensus 189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE--LTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG--CSCTTEEEEEEEESSTTHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc--ccCCCceEEEEEeCcHHhHHHH
Confidence 99999999999999999999999999999999999988888888888777554332 23334556555555444 7778
Q ss_pred HHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCc
Q 008956 253 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 331 (547)
Q Consensus 253 l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v 331 (547)
+..++..... .++||||++++.++.+++.|.+. +.+..+|+++++.+|+.+++.|++|+.+|||||+++++|+|+|++
T Consensus 267 l~~~~~~~~~-~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 345 (410)
T 2j0s_A 267 LCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 345 (410)
T ss_dssp HHHHHHHHTS-SEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhcCC-CcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccC
Confidence 8888876654 59999999999999999999865 889999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccH
Q 008956 332 RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPR 390 (547)
Q Consensus 332 ~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~ 390 (547)
++||++|+|+++.+|+||+||++|.|++|.+++|+++.+....+.+.+.+....+.+|.
T Consensus 346 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 346 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999999999999999999999999999999888888888777666654
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.5e-55 Score=460.88 Aligned_cols=373 Identities=31% Similarity=0.533 Sum_probs=328.3
Q ss_pred CCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCC
Q 008956 12 EVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGP 91 (547)
Q Consensus 12 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~ 91 (547)
..+.+..+|++++|++.+++.|..+||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+.
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~----~~~~ 90 (400)
T 1s2m_A 15 VLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK----LNKI 90 (400)
T ss_dssp ------CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT----SCSC
T ss_pred ccccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc----cCCc
Confidence 334456789999999999999999999999999999999999999999999999999999999998876432 1245
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEe
Q 008956 92 TVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 171 (547)
Q Consensus 92 ~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlD 171 (547)
++||++|+++|+.|+++.+.++....++.+..++++.........+...++|+|+||++|.+++......+.++++||||
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 89999999999999999999999888899999999888777777777789999999999999998877888999999999
Q ss_pred cccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHH
Q 008956 172 EADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 251 (547)
Q Consensus 172 EaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 251 (547)
|||++.+.+|...+..++..+++..|++++|||++..+...+..++..+..+.+... .....+.+.+.......+..
T Consensus 171 EaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~ 247 (400)
T 1s2m_A 171 EADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE---LTLKGITQYYAFVEERQKLH 247 (400)
T ss_dssp SHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS---CBCTTEEEEEEECCGGGHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc---cccCCceeEEEEechhhHHH
Confidence 999999888888999999999989999999999999999999998888876644322 23345667777777788888
Q ss_pred HHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCC
Q 008956 252 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 330 (547)
Q Consensus 252 ~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~ 330 (547)
.+..++.... ..++||||++++.++.+++.|++. +.+..+|+++++.+|..+++.|++++.+|||||+++++|+|+|+
T Consensus 248 ~l~~~~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 248 CLNTLFSKLQ-INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHHHHHHHSC-CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred HHHHHHhhcC-CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 8888887754 469999999999999999999864 88999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHH
Q 008956 331 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 392 (547)
Q Consensus 331 v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l 392 (547)
+++||++++|+++.+|+||+||++|.|++|.|++|+++.+......+.+.+....+.+|.++
T Consensus 327 ~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 327 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred CCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 99999999999999999999999999999999999999998888888888877666666544
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=8.1e-56 Score=464.64 Aligned_cols=378 Identities=31% Similarity=0.538 Sum_probs=317.4
Q ss_pred CCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCC
Q 008956 11 DEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLG 90 (547)
Q Consensus 11 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~ 90 (547)
.+.+....+|+++++++.+++.|...+|..|+++|.++|+.+++++++++++|||+|||++|++|++..+.... .+
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~ 108 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL----KA 108 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS----CS
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC----Cc
Confidence 34455667899999999999999999999999999999999999999999999999999999999998765421 25
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhh-CCCcEEEECcHHHHHHHhcCCcCCCCeeEEE
Q 008956 91 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID-RGVDIVVATPGRLNDILEMRRISLNQVSYLV 169 (547)
Q Consensus 91 ~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 169 (547)
.++||++|+++|+.|+++.+.+++...++.+...+++.........+. ..++|+|+||++|.+.+....+.+.++++||
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEE
Confidence 689999999999999999999999888889999999988877777766 5689999999999999998888889999999
Q ss_pred EecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCc-cc
Q 008956 170 LDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP-MD 248 (547)
Q Consensus 170 lDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~-~~ 248 (547)
|||||+++++++...+..++..+++..|++++|||++..+..++..++.++..+.+.... .....+.+.+..... ..
T Consensus 189 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 266 (414)
T 3eiq_A 189 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE--LTLEGIRQFYINVEREEW 266 (414)
T ss_dssp ECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCC--CCTTSCCEEEEECSSSTT
T ss_pred EECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCc--cCCCCceEEEEEeChHHh
Confidence 999999999999999999999999999999999999999999999999888777654432 223334454444443 44
Q ss_pred hHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCC
Q 008956 249 KHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLD 327 (547)
Q Consensus 249 k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiD 327 (547)
+...+..++.... ..++||||++++.++.+++.|.+. +.+..+|+++++.+|..+++.|++|+.+|||||+++++|||
T Consensus 267 ~~~~l~~~~~~~~-~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 345 (414)
T 3eiq_A 267 KLDTLCDLYETLT-ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 345 (414)
T ss_dssp HHHHHHHHHHSSC-CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CC
T ss_pred HHHHHHHHHHhCC-CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCC
Confidence 7777888877664 469999999999999999999865 88999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHHH
Q 008956 328 IKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDM 395 (547)
Q Consensus 328 ip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~l 395 (547)
+|++++||++++|+++.+|+||+||++|.|++|.|++|+++.+......+.+.++.....+|..+.++
T Consensus 346 ip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 346 VQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred ccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999988888888877664
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=6.1e-54 Score=446.92 Aligned_cols=368 Identities=30% Similarity=0.521 Sum_probs=319.5
Q ss_pred cCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 18 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
.+|+++++++.+++.|..+||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++||++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----~~~~~~lil~ 83 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV----TGQVSVLVMC 83 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC----TTCCCEEEEC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc----CCCeeEEEEC
Confidence 469999999999999999999999999999999999999999999999999999999998876432 1246899999
Q ss_pred CcHHHHHHHHHHHHHhccCC-ceEEEEecCCCCChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc
Q 008956 98 PTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 175 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~~-~i~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ 175 (547)
|+++|+.||++++.++.... ++.+..++|+.........+.. .++|+|+||++|..++....+.+.++++|||||||+
T Consensus 84 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 84 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 163 (391)
T ss_dssp SCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHH
Confidence 99999999999999997654 6888889998877666665554 479999999999999988888889999999999999
Q ss_pred cccC-CcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHH
Q 008956 176 MLDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 254 (547)
Q Consensus 176 ll~~-g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 254 (547)
++++ ++...+..++..++...|++++|||++..+..++..++.++..+.+..... .....+.+.+.......+...+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 164 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETK-LTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCC-CCCTTCEEEEEECCGGGHHHHHH
T ss_pred HhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccc-cCcccceEEEEEcCchhHHHHHH
Confidence 9874 678888899999998999999999999999999999999888876654332 22344666677777788888888
Q ss_pred HHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccE
Q 008956 255 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRV 333 (547)
Q Consensus 255 ~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~ 333 (547)
.++... ...++||||+++++++.+++.|.+. +.+..+|+++++.+|..+++.|++++.+|||||+++++|+|+|++++
T Consensus 243 ~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 243 DLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 888876 4579999999999999999999865 88999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCC-hHHHHHHHHHHHHhcccccHH
Q 008956 334 VVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD-SRYASDLIKLLEGAKQQVPRE 391 (547)
Q Consensus 334 VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~-~~~~~~l~~~l~~~~~~v~~~ 391 (547)
||++++|+++.+|+||+||++|.|++|.+++|+++.+ ..+...+.+.+....+++|.+
T Consensus 322 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999999999998653 455566666665555666544
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-53 Score=438.26 Aligned_cols=358 Identities=34% Similarity=0.584 Sum_probs=318.0
Q ss_pred ccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEE
Q 008956 17 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 95 (547)
Q Consensus 17 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLi 95 (547)
..+|++++|++.+++.|.++||.+|+|+|.++++.++++ +++++.+|||+|||++|++|++..+... .+.++||
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~li 79 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-----NGIEAII 79 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-----SSCCEEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-----CCCcEEE
Confidence 467999999999999999999999999999999999998 6999999999999999999988876431 2568999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc
Q 008956 96 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 175 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ 175 (547)
++|+++|+.|+++++.++.....+.+..++++.........+. .++|+|+||++|.+.+......+.++++||+||||+
T Consensus 80 l~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 80 LTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp ECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred EcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 9999999999999999998888888889999887766665554 689999999999999988888889999999999999
Q ss_pred cccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHH
Q 008956 176 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 255 (547)
Q Consensus 176 ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 255 (547)
+.++++...+..++..+++..+++++|||++......+..++.++..+.... ...+.+.+......++...+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI------NANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS------SSSSEEEEEECCGGGHHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC------CCCceEEEEEeChHHHHHHHHH
Confidence 9999999999999999999999999999999999998888887766554332 2245566667777788888888
Q ss_pred HHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEE
Q 008956 256 ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVV 334 (547)
Q Consensus 256 ~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~V 334 (547)
++. ....++||||++++.++.+++.|++. +.+..+|+++++.+|..+++.|++++.+|||||+++++|+|+|++++|
T Consensus 233 ~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 776 34579999999999999999999865 889999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccc
Q 008956 335 VNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQV 388 (547)
Q Consensus 335 I~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v 388 (547)
|++++|+++.+|+||+||++|.|++|.+++++++.+......+.+.+......+
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred EEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 999999999999999999999999999999999999888888877776554443
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.4e-54 Score=471.06 Aligned_cols=356 Identities=30% Similarity=0.532 Sum_probs=300.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 25 FPPELLREVHNAGFSSPTPIQAQSWPIAL--QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 25 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
|++++++.|...||..|+|+|.++|+.++ .++++|++||||+|||++|++|++..+.........++++|||+||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 99999999999999999999999999999 7789999999999999999999999887754433445789999999999
Q ss_pred HHHHHHHHHHhcc----CCceEEEEecCCCCChhhHHHhhC-CCcEEEECcHHHHHHHhcC-CcCCCCeeEEEEeccccc
Q 008956 103 ATQIQDEAVKFGK----SSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEADRM 176 (547)
Q Consensus 103 ~~Q~~~~~~~~~~----~~~i~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlDEaH~l 176 (547)
+.|+++++.++.. ...+.+..++++......+..+.. .++|+|+||++|.+++... ...+..+++|||||||+|
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 9999999998753 245678888998888777777654 7999999999999988754 445788999999999999
Q ss_pred ccCCcHHHHHHHHHhCC-------CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCccc--ccccccceeEEEEEcCcc
Q 008956 177 LDMGFEPQIRKIVKEVP-------ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVD--ELAANKAITQHIEVLAPM 247 (547)
Q Consensus 177 l~~g~~~~i~~i~~~l~-------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~--~~~~~~~i~~~~~~~~~~ 247 (547)
++++|.+.+..|+..++ ...|+++||||+++.+..++..++..+..+.+.... .......+.+.+......
T Consensus 188 ~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 267 (579)
T 3sqw_A 188 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267 (579)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecch
Confidence 99999999988877653 367999999999999999999999888776554322 222333455555444432
Q ss_pred -ch----HHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhc----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEE
Q 008956 248 -DK----HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVA 318 (547)
Q Consensus 248 -~k----~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVa 318 (547)
.+ ...+...+.....+.++||||+++..++.+++.|.+ .+.+..+|+++++.+|..+++.|++++++||||
T Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVa 347 (579)
T 3sqw_A 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 347 (579)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 22 223344444446678999999999999999999985 478999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHH
Q 008956 319 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKL 380 (547)
Q Consensus 319 T~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~ 380 (547)
|+++++|||+|++++||++++|.+++.|+||+||+||.|+.|.|++|+.+.+..+.+.+.+.
T Consensus 348 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 409 (579)
T 3sqw_A 348 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 409 (579)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred cchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887777666543
No 9
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=9.9e-54 Score=467.19 Aligned_cols=357 Identities=30% Similarity=0.524 Sum_probs=299.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 25 FPPELLREVHNAGFSSPTPIQAQSWPIAL--QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 25 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
|++.+++.|...||..|+|+|.++|+.++ .++++|++||||+|||++|++|++..+.........++++|||+||++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6789999999999999999999999987754433345689999999999
Q ss_pred HHHHHHHHHHhcc----CCceEEEEecCCCCChhhHHHhh-CCCcEEEECcHHHHHHHhcC-CcCCCCeeEEEEeccccc
Q 008956 103 ATQIQDEAVKFGK----SSRISCTCLYGGAPKGPQLKDID-RGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEADRM 176 (547)
Q Consensus 103 ~~Q~~~~~~~~~~----~~~i~~~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlDEaH~l 176 (547)
+.|+++.+.++.. ...+.+..++++......+..+. .+++|+|+||++|.+++... ...+.++++|||||||+|
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 9999999998743 23466788888888777776664 47999999999999988754 345778999999999999
Q ss_pred ccCCcHHHHHHHHHhCC-------CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCccc--ccccccceeEEEEEcCcc
Q 008956 177 LDMGFEPQIRKIVKEVP-------ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVD--ELAANKAITQHIEVLAPM 247 (547)
Q Consensus 177 l~~g~~~~i~~i~~~l~-------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~--~~~~~~~i~~~~~~~~~~ 247 (547)
++++|.+.+..++..++ ...|+++||||++..+..++..++..+..+.+.... .......+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 99999999988877653 367999999999999999999998887776554322 222333455555444332
Q ss_pred -ch----HHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhc----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEE
Q 008956 248 -DK----HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVA 318 (547)
Q Consensus 248 -~k----~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVa 318 (547)
.+ ...+...+.....+.++||||+++..++.+++.|.+ .+.+..+|+++++.+|..+++.|++|+++||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 22 223334444446678999999999999999999985 478999999999999999999999999999999
Q ss_pred ccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHH
Q 008956 319 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLL 381 (547)
Q Consensus 319 T~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l 381 (547)
|+++++|||+|++++||++++|.++.+|+||+|||||.|+.|.|++|+.+.+..+.+.+.+..
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998888777776553
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.6e-52 Score=436.22 Aligned_cols=356 Identities=32% Similarity=0.543 Sum_probs=302.3
Q ss_pred CCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCE
Q 008956 15 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPT 92 (547)
Q Consensus 15 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~ 92 (547)
+...+|++++|++.+++.|...+|..|+|+|.++++.++++ +++++++|||+|||++|++|++..+.... .+++
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~~~ 77 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED----ASPQ 77 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC----CSCC
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC----CCcc
Confidence 34578999999999999999999999999999999999998 89999999999999999999988765421 2568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEec
Q 008956 93 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDE 172 (547)
Q Consensus 93 vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 172 (547)
+||++|+++|+.|+++.+.++.....+.+...+++...... ...++|+|+||++|.+.+......+.++++|||||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999988888888887776543322 23589999999999999988888899999999999
Q ss_pred cccccc-CCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEc-CccchH
Q 008956 173 ADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL-APMDKH 250 (547)
Q Consensus 173 aH~ll~-~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~-~~~~k~ 250 (547)
||++.+ +++...+..+...++...|++++|||+++.+..++..++.++..+.+.... .....+.+.+... ....+.
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 231 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNE--VNVDAIKQLYMDCKNEADKF 231 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGG--CSCTTEEEEEEECSSHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccc--cccccccEEEEEcCchHHHH
Confidence 999988 678889999999999999999999999999999999998888776554432 2233344444444 334555
Q ss_pred HHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCC
Q 008956 251 RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIK 329 (547)
Q Consensus 251 ~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip 329 (547)
..+..++... ...++||||++++.++.+++.|++. +.+..+|+++++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 232 ~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 310 (395)
T 3pey_A 232 DVLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIP 310 (395)
T ss_dssp HHHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcc
Confidence 6666666554 4579999999999999999999865 8899999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCC------ChhhhHhhhccccCCCCceEEEEEecCCCh-HHHHHHHHHH
Q 008956 330 DIRVVVNYDFPT------GVEDYVHRIGRTGRAGATGVAYTFFGDQDS-RYASDLIKLL 381 (547)
Q Consensus 330 ~v~~VI~~d~p~------s~~~yiQriGR~gR~g~~g~~~~l~~~~~~-~~~~~l~~~l 381 (547)
++++||++|+|+ ++.+|+||+||++|.|++|.+++|+.+.+. .....+.+.+
T Consensus 311 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 311 TVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp TEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred cCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999999986443 3444444443
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1e-54 Score=453.04 Aligned_cols=375 Identities=31% Similarity=0.542 Sum_probs=188.8
Q ss_pred CCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCC
Q 008956 12 EVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGP 91 (547)
Q Consensus 12 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~ 91 (547)
...++..+|+++++++.+++.+...||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~----~~~~ 90 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----VKAP 90 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT----CCSC
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc----CCCC
Confidence 345667889999999999999999999999999999999999999999999999999999999998876542 1256
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEe
Q 008956 92 TVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 171 (547)
Q Consensus 92 ~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlD 171 (547)
++||++|+++|+.|+++++.++....++.+..++|+.........+. .++|+|+||++|.+.+....+.+.++++||+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 99999999999999999999998888889999998887666555444 58999999999999998888888899999999
Q ss_pred cccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCc-cchH
Q 008956 172 EADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP-MDKH 250 (547)
Q Consensus 172 EaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~-~~k~ 250 (547)
|||++.++++...+..++..+++..|++++|||+++.+.++...++..+..+.+..... ....+.+.+..... ..+.
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL--TLEGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc--cCCCceEEEEEcCchhhHH
Confidence 99999999999999999999999999999999999999999999998888876654321 11223333332222 2355
Q ss_pred HHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCC
Q 008956 251 RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIK 329 (547)
Q Consensus 251 ~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip 329 (547)
..+..++... ...++||||+++++++.+++.|++. +.+..+|+++++.+|..+++.|++++.+|||||+++++|+|+|
T Consensus 248 ~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~ 326 (394)
T 1fuu_A 248 ECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 326 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcc
Confidence 5566666554 3469999999999999999999865 7899999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHH
Q 008956 330 DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRD 394 (547)
Q Consensus 330 ~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~ 394 (547)
++++||++++|+++.+|+||+||++|.|++|.+++|+++.+......+.+.+......+|..+.+
T Consensus 327 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 391 (394)
T 1fuu_A 327 QVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 391 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred cCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhh
Confidence 99999999999999999999999999999999999999998888888888877777777665544
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.9e-52 Score=438.46 Aligned_cols=366 Identities=28% Similarity=0.478 Sum_probs=307.7
Q ss_pred CCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCE
Q 008956 15 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPT 92 (547)
Q Consensus 15 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~ 92 (547)
.++.+|+++++++.+++.|...||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+.... .+++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----~~~~ 97 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN----KYPQ 97 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS----CSCC
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC----CCCC
Confidence 35678999999999999999999999999999999999997 89999999999999999999988775422 2458
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccC-CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhc-CCcCCCCeeEEEE
Q 008956 93 VLVLSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM-RRISLNQVSYLVL 170 (547)
Q Consensus 93 vLil~Ptr~L~~Q~~~~~~~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~-~~~~l~~~~~lVl 170 (547)
+|||+|+++|+.|+++.+.++... ..+.+....++....... ...++|+|+||++|.+++.. ..+.+.++++|||
T Consensus 98 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 98 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 999999999999999999998765 356666666665443221 34579999999999998865 5566789999999
Q ss_pred eccccccc-CCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCc-cc
Q 008956 171 DEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP-MD 248 (547)
Q Consensus 171 DEaH~ll~-~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~-~~ 248 (547)
||||++++ .++...+..+...++...|++++|||++..+..++..++.++..+.+..... ....+.+.+..... ..
T Consensus 175 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 175 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE--TLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp ETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGS--SCTTEEEEEEECSSHHH
T ss_pred eCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccc--cccCceEEEEEcCChHH
Confidence 99999987 6788899999999999999999999999999999999998888776654432 33345555544443 45
Q ss_pred hHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCC
Q 008956 249 KHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLD 327 (547)
Q Consensus 249 k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiD 327 (547)
+...+..++.... ..++||||++++.++.+++.|.+. +.+..+|+++++.+|..+++.|++|+++|||||+++++|||
T Consensus 253 ~~~~l~~~~~~~~-~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 331 (412)
T 3fht_A 253 KFQALCNLYGAIT-IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 331 (412)
T ss_dssp HHHHHHHHHHHHS-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHHhhcC-CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCC
Confidence 6677777776654 469999999999999999999865 78999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCC------ChhhhHhhhccccCCCCceEEEEEecCCC-hHHHHHHHHHHHHhcccccH
Q 008956 328 IKDIRVVVNYDFPT------GVEDYVHRIGRTGRAGATGVAYTFFGDQD-SRYASDLIKLLEGAKQQVPR 390 (547)
Q Consensus 328 ip~v~~VI~~d~p~------s~~~yiQriGR~gR~g~~g~~~~l~~~~~-~~~~~~l~~~l~~~~~~v~~ 390 (547)
+|++++||++++|+ +..+|+||+||+||.|+.|.+++|++..+ ......+.+.+......++.
T Consensus 332 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 332 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp CTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred ccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 99999999999995 56899999999999999999999998654 56666677777655555543
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.7e-51 Score=417.83 Aligned_cols=335 Identities=34% Similarity=0.550 Sum_probs=288.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHH
Q 008956 25 FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 104 (547)
Q Consensus 25 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~ 104 (547)
|++++.+.|..+||..|+|+|.++++.+++++++++++|||+|||++|++|++.. +.++||++|+++|+.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----------~~~~liv~P~~~L~~ 70 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----------GMKSLVVTPTRELTR 70 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----------cCCEEEEeCCHHHHH
Confidence 5789999999999999999999999999999999999999999999999988764 458999999999999
Q ss_pred HHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHH
Q 008956 105 QIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQ 184 (547)
Q Consensus 105 Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~ 184 (547)
|+++.+.++....++.+..++++.........+.. ++|+|+||++|.+.+....+.+.++++||+||||++.++++...
T Consensus 71 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~ 149 (337)
T 2z0m_A 71 QVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDD 149 (337)
T ss_dssp HHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHH
Confidence 99999999988888888889998877666665544 89999999999999888777888999999999999999999999
Q ss_pred HHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCC
Q 008956 185 IRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGS 264 (547)
Q Consensus 185 i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~ 264 (547)
+..++..++...+++++|||++..+...+..++.++..+.... ....+.+.+.......+. ....+.. ..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~ 221 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACI-----GLANVEHKFVHVKDDWRS--KVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSG-----GGGGEEEEEEECSSSSHH--HHHHHHT-CCCS
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeeccc-----ccCCceEEEEEeChHHHH--HHHHHHh-CCCC
Confidence 9999999999999999999999999999999988877664321 122344444444433322 2244443 4457
Q ss_pred eEEEEcCChHHHHHHHHHHhcccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChh
Q 008956 265 KIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVE 344 (547)
Q Consensus 265 k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~ 344 (547)
++||||+++++++.+++.|. .+..+|++++..+|..+++.|++++.+|||||+++++|+|+|++++||++++|+++.
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~ 298 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLR 298 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHH
T ss_pred cEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHH
Confidence 99999999999999999887 678899999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHH
Q 008956 345 DYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLE 382 (547)
Q Consensus 345 ~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~ 382 (547)
+|+||+||++|.|++|.+++|+. .+....+.+.+.+.
T Consensus 299 ~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 299 TYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999 77777777666553
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4e-53 Score=453.32 Aligned_cols=374 Identities=28% Similarity=0.474 Sum_probs=179.1
Q ss_pred EEEecCCCCCC---ccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHh
Q 008956 6 LIFQGDEVPPP---FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHL 80 (547)
Q Consensus 6 ~~~~g~~~p~~---~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l~~~l~~l 80 (547)
+.+.+.+.|.| +.+|++++|++.+++.|..+||..|+|+|.++|+.++++ +++|+++|||||||++|++|++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 33444444443 568999999999999999999999999999999999997 8999999999999999999998776
Q ss_pred hhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC-CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhc-C
Q 008956 81 KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM-R 158 (547)
Q Consensus 81 ~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~-~ 158 (547)
.... .++++|||+||++|+.|+++.+.++... ..+.+....++...... ....++|+|+||++|.+++.. .
T Consensus 157 ~~~~----~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~ 229 (479)
T 3fmp_B 157 EPAN----KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLK 229 (479)
T ss_dssp CTTS----CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSC
T ss_pred hhcC----CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcC
Confidence 5422 2458999999999999999999988764 35666666665543322 133579999999999998865 4
Q ss_pred CcCCCCeeEEEEeccccccc-CCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccce
Q 008956 159 RISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAI 237 (547)
Q Consensus 159 ~~~l~~~~~lVlDEaH~ll~-~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i 237 (547)
.+.+.++++|||||||++++ .++...+..++..++..+|++++|||++..+..++..++.++..+.+..... ....+
T Consensus 230 ~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~ 307 (479)
T 3fmp_B 230 FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE--TLDTI 307 (479)
T ss_dssp CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------
T ss_pred CcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc--CcCCc
Confidence 56678999999999999987 6788889999999999999999999999999999999999888887765432 22234
Q ss_pred eEEEEEcCc-cchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcE
Q 008956 238 TQHIEVLAP-MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPV 315 (547)
Q Consensus 238 ~~~~~~~~~-~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~I 315 (547)
.+.+..... ..+...+..++.... ..++||||+++..++.+++.|.+. +.+..+|+++++.+|..+++.|++|+++|
T Consensus 308 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~i 386 (479)
T 3fmp_B 308 KQYYVLCSSRDEKFQALCNLYGAIT-IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEeCCHHHHHHHHHHHHhhcc-CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 444433332 445556666665443 468999999999999999999865 78999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEcCCCC------ChhhhHhhhccccCCCCceEEEEEecCCC-hHHHHHHHHHHHHhcccc
Q 008956 316 LVATDVAARGLDIKDIRVVVNYDFPT------GVEDYVHRIGRTGRAGATGVAYTFFGDQD-SRYASDLIKLLEGAKQQV 388 (547)
Q Consensus 316 LVaT~~~~~GiDip~v~~VI~~d~p~------s~~~yiQriGR~gR~g~~g~~~~l~~~~~-~~~~~~l~~~l~~~~~~v 388 (547)
||||+++++|||+|++++||+||+|+ +..+|+||+||+||.|+.|.+++|++..+ ..+...+.+.+......+
T Consensus 387 Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l 466 (479)
T 3fmp_B 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 466 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceEC
Confidence 99999999999999999999999995 56899999999999999999999998655 556666666665554444
Q ss_pred c
Q 008956 389 P 389 (547)
Q Consensus 389 ~ 389 (547)
+
T Consensus 467 ~ 467 (479)
T 3fmp_B 467 D 467 (479)
T ss_dssp -
T ss_pred C
Confidence 3
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.6e-49 Score=429.97 Aligned_cols=344 Identities=19% Similarity=0.289 Sum_probs=274.7
Q ss_pred CccCCc--cCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCE
Q 008956 16 PFMSFD--ATGFPPELLREVHN-AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPT 92 (547)
Q Consensus 16 ~~~~f~--~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~ 92 (547)
....|. ++++++.+.+.|.. .||..|+|+|.++|+.+++++++++++|||+|||++|++|++.. .+.
T Consensus 17 ~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------~g~ 86 (591)
T 2v1x_A 17 SPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------DGF 86 (591)
T ss_dssp CGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----------SSE
T ss_pred chhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----------CCc
Confidence 334444 57788999999998 49999999999999999999999999999999999999998652 358
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHH---Hh---hCCCcEEEECcHHHH------HHHhcCCc
Q 008956 93 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK---DI---DRGVDIVVATPGRLN------DILEMRRI 160 (547)
Q Consensus 93 vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~---~~---~~~~~IlV~Tp~~L~------~~l~~~~~ 160 (547)
+|||+|+++|+.|+.+.+.++ ++.+..+.++....+... .+ ...++|+|+||++|. +.+.. ..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HH
T ss_pred EEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hh
Confidence 999999999999999999987 467777888776554432 22 346899999999874 22222 34
Q ss_pred CCCCeeEEEEecccccccCC--cHHHHHH--HHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccc
Q 008956 161 SLNQVSYLVLDEADRMLDMG--FEPQIRK--IVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA 236 (547)
Q Consensus 161 ~l~~~~~lVlDEaH~ll~~g--~~~~i~~--i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~ 236 (547)
.+.++++|||||||++.+|+ |.+.+.. ++....+..+++++|||+++.+...+..++..+..+.+.... ...+
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~---~r~n 238 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF---NRPN 238 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC---CCTT
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC---CCcc
Confidence 56789999999999999988 7666554 333334468999999999999888887777654333222211 1122
Q ss_pred eeEEEEEcC--ccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCC
Q 008956 237 ITQHIEVLA--PMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 313 (547)
Q Consensus 237 i~~~~~~~~--~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~ 313 (547)
+...+.... ...+...+..++.....+.++||||++++.++.+++.|.+. +.+..+|++|++.+|..+++.|+++++
T Consensus 239 l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~ 318 (591)
T 2v1x_A 239 LYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEI 318 (591)
T ss_dssp EEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred cEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 333332222 12344566666665556789999999999999999999865 889999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHH
Q 008956 314 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDL 377 (547)
Q Consensus 314 ~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l 377 (547)
+|||||+++++|||+|++++||+|++|.+++.|+|++||+||.|+++.|++|++..|......+
T Consensus 319 ~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 319 QVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp SEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred eEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987665544443
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.8e-48 Score=420.11 Aligned_cols=341 Identities=22% Similarity=0.360 Sum_probs=274.7
Q ss_pred ccCCccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEE
Q 008956 17 FMSFDATGFPPELLREVHN-AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 95 (547)
Q Consensus 17 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLi 95 (547)
+.+|++++|++.+.+.|.. .||..|+|+|.++|+.+++++++++++|||+|||++|++|++.. ...+||
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----------~g~~lv 70 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL----------NGLTVV 70 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS----------SSEEEE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh----------CCCEEE
Confidence 4689999999999999998 69999999999999999999999999999999999999998743 348999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH---HHh-hCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEe
Q 008956 96 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDI-DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 171 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~---~~~-~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlD 171 (547)
|+|+++|+.|+.+.+.++ ++.+..+.++....+.. ..+ ...++|+|+||++|........+...++++||||
T Consensus 71 i~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred ECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 999999999999999886 35667777766544432 222 3458999999999953222223445789999999
Q ss_pred cccccccCC--cHHHHHH---HHHhCCCCceEEEEeccCcHHHHHHHHHhcC-CCeEEEeCcccccccccceeEEEEEcC
Q 008956 172 EADRMLDMG--FEPQIRK---IVKEVPARRQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANKAITQHIEVLA 245 (547)
Q Consensus 172 EaH~ll~~g--~~~~i~~---i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~i~~~~~~~~~~~i~~~~~~~~ 245 (547)
|||++.+|+ |.+.+.. +...++ ..+++++|||++..+...+...+. ....+.+...+ ...+ .+....
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~----r~~l--~~~v~~ 219 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD----RPNI--RYMLME 219 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC----CTTE--EEEEEE
T ss_pred CccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC----CCce--EEEEEe
Confidence 999999987 6555543 445554 578999999999887765544442 33333333222 1122 233334
Q ss_pred ccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcccccc
Q 008956 246 PMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAAR 324 (547)
Q Consensus 246 ~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~ 324 (547)
...+...+..++... .+.++||||++++.++.+++.|++. +.+..+|+++++.+|..+++.|++++++|||||+++++
T Consensus 220 ~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 456667777777765 4579999999999999999999865 88999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHH
Q 008956 325 GLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIK 379 (547)
Q Consensus 325 GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~ 379 (547)
|||+|++++||++++|+++++|+||+||+||.|+++.|++|+++.|....+.++.
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998877665555443
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-50 Score=432.36 Aligned_cols=368 Identities=27% Similarity=0.463 Sum_probs=257.3
Q ss_pred CCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCC
Q 008956 12 EVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL 89 (547)
Q Consensus 12 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~ 89 (547)
..|.++..|...++++.+++.+...+|..|+++|.++|+.++++ +++|+++|||+|||++|+++++..+.... .
T Consensus 113 ~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~----~ 188 (508)
T 3fho_A 113 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV----P 188 (508)
T ss_dssp --------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC----C
T ss_pred ccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC----C
Confidence 33445556777788999999999999999999999999999998 99999999999999999999998875422 2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEE
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLV 169 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 169 (547)
++++|||+|+++|+.|+++.+.+++....+.+...+++.... .....++|+|+||++|.+.+....+.+.++++||
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lII 264 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFV 264 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCEEE
Confidence 458999999999999999999999877767666655544322 1233689999999999999988888899999999
Q ss_pred Eeccccccc-CCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEc-Ccc
Q 008956 170 LDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL-APM 247 (547)
Q Consensus 170 lDEaH~ll~-~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~-~~~ 247 (547)
|||||++.+ .++...+..++..++...|++++|||+++.+..+...++.++..+.+..... ....+.+.+... ...
T Consensus 265 iDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~ 342 (508)
T 3fho_A 265 LDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL--SVEGIKQLYMDCQSEE 342 (508)
T ss_dssp ECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC------CCCCEEEEC--CH
T ss_pred EechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccC--CcccceEEEEECCchH
Confidence 999999987 6789999999999999999999999999999999999988887765543322 222233333333 445
Q ss_pred chHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCC
Q 008956 248 DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGL 326 (547)
Q Consensus 248 ~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~Gi 326 (547)
.+...+..++... ...++||||+++.+++.+++.|.+. +.+..+|+++++.+|+.+++.|++|+.+|||||+++++||
T Consensus 343 ~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 343 HKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 5666666666554 4479999999999999999999865 7899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCC------CChhhhHhhhccccCCCCceEEEEEecC-CChHHHHHHHHHHHHhcccccH
Q 008956 327 DIKDIRVVVNYDFP------TGVEDYVHRIGRTGRAGATGVAYTFFGD-QDSRYASDLIKLLEGAKQQVPR 390 (547)
Q Consensus 327 Dip~v~~VI~~d~p------~s~~~yiQriGR~gR~g~~g~~~~l~~~-~~~~~~~~l~~~l~~~~~~v~~ 390 (547)
|+|++++||+++.| .++.+|+||+||+||.|++|.+++|+.+ .+......+.+.+......++.
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999999999999 7899999999999999999999999984 4556667777776666666654
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.9e-48 Score=407.89 Aligned_cols=325 Identities=22% Similarity=0.320 Sum_probs=262.3
Q ss_pred HHHHHHHHC-CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHH
Q 008956 28 ELLREVHNA-GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 106 (547)
Q Consensus 28 ~l~~~l~~~-g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~ 106 (547)
++.+.+.+. +| +|+|+|.++++.+++++++++++|||+|||++|+++++..+.. ++++|||+||++|+.|+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~-------~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------GKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT-------TCCEEEEESSHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC-------CCEEEEEECCHHHHHHH
Confidence 344455554 55 8999999999999999999999999999999999988876633 67999999999999999
Q ss_pred HHHHHHhccCCceEEEEecCCCCC---hhhHHHhhCC-CcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccc-----
Q 008956 107 QDEAVKFGKSSRISCTCLYGGAPK---GPQLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML----- 177 (547)
Q Consensus 107 ~~~~~~~~~~~~i~~~~~~g~~~~---~~~~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll----- 177 (547)
++.+.++.. .++++..++|+... ..++..+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccch
Confidence 999999987 78899999999887 5566666665 99999999999887764 667789999999998654
Q ss_pred -----c-CCcHHH-HHHHHHhCC-----------CCceEEEEecc-CcHHHH-HHHHHhcCCCeEEEeCcccccccccce
Q 008956 178 -----D-MGFEPQ-IRKIVKEVP-----------ARRQTLMYTAT-WPREVR-KIAADLLVNPVQVNIGNVDELAANKAI 237 (547)
Q Consensus 178 -----~-~g~~~~-i~~i~~~l~-----------~~~q~l~~SAT-~~~~~~-~~~~~~l~~~~~i~i~~~~~~~~~~~i 237 (547)
+ ++|.+. +..++..++ ...|++++||| +|..+. .+...++. +.+. ........+
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~i 231 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNI 231 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSS--CCCCCCCSE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcC--ccccccccc
Confidence 4 778777 788888776 78999999999 565544 33333332 1111 111222334
Q ss_pred eEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceE-EEcCCCCHHHHHHHHHHhhcCCCcE
Q 008956 238 TQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA-AIHGDKSQSERDYVLNQFRAGRSPV 315 (547)
Q Consensus 238 ~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~-~ihg~~~~~~R~~~l~~F~~g~~~I 315 (547)
.+.+... ++...+..+++.. +.++||||+++..++.+++.|.+. +.+. .+|+. +|+ ++.|++|+++|
T Consensus 232 ~~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~v 300 (414)
T 3oiy_A 232 THVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINI 300 (414)
T ss_dssp EEEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSE
T ss_pred hheeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeE
Confidence 4444333 4666677777773 379999999999999999999865 7787 88884 444 99999999999
Q ss_pred EEE----ccccccCCCCCC-ccEEEEcCCC--CChhhhHhhhccccCCC----CceEEEEEecCCChHHHHHHHHHHH
Q 008956 316 LVA----TDVAARGLDIKD-IRVVVNYDFP--TGVEDYVHRIGRTGRAG----ATGVAYTFFGDQDSRYASDLIKLLE 382 (547)
Q Consensus 316 LVa----T~~~~~GiDip~-v~~VI~~d~p--~s~~~yiQriGR~gR~g----~~g~~~~l~~~~~~~~~~~l~~~l~ 382 (547)
||| |+++++|||+|+ +++||+||+| .++.+|+||+||+||.| ++|.+++|+ .+......+.+.+.
T Consensus 301 Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 301 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999 999999999999 9999999999 99999999999999988 589999999 66777777777776
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.4e-46 Score=407.53 Aligned_cols=332 Identities=19% Similarity=0.217 Sum_probs=203.8
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 36 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 36 ~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
++..+|+|+|.++++.+++++++|+++|||+|||++|++|++..+..... ..++++|||+||++|+.||++++.+++.
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--cCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34568999999999999999999999999999999999999988766322 1256899999999999999999999988
Q ss_pred CCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCc-CCCCeeEEEEecccccccCCcHHHH-HHHHHh--
Q 008956 116 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQVSYLVLDEADRMLDMGFEPQI-RKIVKE-- 191 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~-~l~~~~~lVlDEaH~ll~~g~~~~i-~~i~~~-- 191 (547)
..++.+..++|+......+..+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+++....+ ..++..
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 778999999999887777777777799999999999999988777 7889999999999999988743333 222222
Q ss_pred --CCCCceEEEEeccCcH-----------HHHHHHHHhc------------------CCCeEEEeCcccccccc------
Q 008956 192 --VPARRQTLMYTATWPR-----------EVRKIAADLL------------------VNPVQVNIGNVDELAAN------ 234 (547)
Q Consensus 192 --l~~~~q~l~~SAT~~~-----------~~~~~~~~~l------------------~~~~~i~i~~~~~~~~~------ 234 (547)
..+..+++++|||++. .+..+...+. ..+....+.........
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 1356889999999842 1222222211 11111100000000000
Q ss_pred -----------ccee-EEE-------------------------------------------------------------
Q 008956 235 -----------KAIT-QHI------------------------------------------------------------- 241 (547)
Q Consensus 235 -----------~~i~-~~~------------------------------------------------------------- 241 (547)
.... ..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000 000
Q ss_pred ---------------------------------------------EEcCccchHHHHHHHHHhc---CCCCeEEEEcCCh
Q 008956 242 ---------------------------------------------EVLAPMDKHRRLEQILRSQ---EPGSKIIVFCSTK 273 (547)
Q Consensus 242 ---------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~k~IVF~~s~ 273 (547)
.......|...|.+++.+. ..+.++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 0000133455555666543 5568999999999
Q ss_pred HHHHHHHHHHhcc-------------cceEEEcCCCCHHHHHHHHHHhhc-CCCcEEEEccccccCCCCCCccEEEEcCC
Q 008956 274 KMCDQLARNLTRQ-------------FGAAAIHGDKSQSERDYVLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYDF 339 (547)
Q Consensus 274 ~~~~~l~~~L~~~-------------~~~~~ihg~~~~~~R~~~l~~F~~-g~~~ILVaT~~~~~GiDip~v~~VI~~d~ 339 (547)
..++.+++.|.+. .....+|+++++.+|..+++.|++ |+++|||||+++++|||+|++++||+||+
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999753 234556888999999999999999 99999999999999999999999999999
Q ss_pred CCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 340 PTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 340 p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
|+++..|+||+|| ||. ++|.+++|++..+.
T Consensus 481 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 481 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp CSCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 9999999999999 999 88999999987554
No 20
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.5e-45 Score=399.19 Aligned_cols=333 Identities=22% Similarity=0.270 Sum_probs=232.3
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 118 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~ 118 (547)
.+|+|+|.++++.+++++++|+++|||+|||++|++|++..+..... ..++++|||+||++|+.||++++.+++...+
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--GQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--CCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 47999999999999999999999999999999999999988776322 1256899999999999999999999998888
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCc-CCCCeeEEEEecccccccCCc-HHHHHHHHHh-C---
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQVSYLVLDEADRMLDMGF-EPQIRKIVKE-V--- 192 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~-~l~~~~~lVlDEaH~ll~~g~-~~~i~~i~~~-l--- 192 (547)
+.+..++|+......+..+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+. ...+...+.. +
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSC
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccc
Confidence 999999999987777777777799999999999999988776 788999999999999988753 2223333332 1
Q ss_pred -CCCceEEEEeccCcHH-----------HHHHHHHhcCCCeEEEeCccc--cc---ccccceeEEEEE------------
Q 008956 193 -PARRQTLMYTATWPRE-----------VRKIAADLLVNPVQVNIGNVD--EL---AANKAITQHIEV------------ 243 (547)
Q Consensus 193 -~~~~q~l~~SAT~~~~-----------~~~~~~~~l~~~~~i~i~~~~--~~---~~~~~i~~~~~~------------ 243 (547)
.+..+++++|||++.. +..+.. .+.... +...... .. ............
T Consensus 161 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 161 RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASV-IATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSE-EECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cCCCCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCee-eeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 2457899999998532 111211 111111 1110000 00 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008956 244 -------------------------------------------------------------------------------- 243 (547)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (547)
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred ------------------------------------------------cCccchHHHHHHHHHhc---CCCCeEEEEcCC
Q 008956 244 ------------------------------------------------LAPMDKHRRLEQILRSQ---EPGSKIIVFCST 272 (547)
Q Consensus 244 ------------------------------------------------~~~~~k~~~l~~~l~~~---~~~~k~IVF~~s 272 (547)
.....|...+.+++... ....++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 00133455555555543 455899999999
Q ss_pred hHHHHHHHHHHhcc-----c--------ceEEEcCCCCHHHHHHHHHHhhc-CCCcEEEEccccccCCCCCCccEEEEcC
Q 008956 273 KKMCDQLARNLTRQ-----F--------GAAAIHGDKSQSERDYVLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYD 338 (547)
Q Consensus 273 ~~~~~~l~~~L~~~-----~--------~~~~ihg~~~~~~R~~~l~~F~~-g~~~ILVaT~~~~~GiDip~v~~VI~~d 338 (547)
+.+++.+++.|.+. + ....+|++|++.+|..+++.|++ |+++|||||+++++|||+|++++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 99999999999853 2 33455679999999999999999 9999999999999999999999999999
Q ss_pred CCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHH
Q 008956 339 FPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDL 377 (547)
Q Consensus 339 ~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l 377 (547)
+|+++.+|+||+|| ||. +.|.+++|+++.+......+
T Consensus 479 ~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 479 YVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999 999 88999999987665544333
No 21
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-44 Score=406.23 Aligned_cols=335 Identities=19% Similarity=0.232 Sum_probs=267.4
Q ss_pred CCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 19 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 19 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
+|++++||+.+.+.+...||.+|+|+|.++++. +++++++++++|||||||++|.++++..+... +.++||++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------~~~~l~i~ 75 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ------GGKAVYIV 75 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH------CSEEEEEC
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC------CCEEEEEc
Confidence 689999999999999999999999999999998 88999999999999999999999999877631 56999999
Q ss_pred CcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 98 PTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
|+++|+.|+++.++++.. .++.+..++|+...... ....++|+|+||++|..++......+.++++|||||||++.
T Consensus 76 P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 76 PLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp SSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGG
T ss_pred CcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccC
Confidence 999999999999976543 36888888887655432 12368999999999999888766668899999999999999
Q ss_pred cCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCccccccccc--ceeEEEEEcC-----ccchH
Q 008956 178 DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK--AITQHIEVLA-----PMDKH 250 (547)
Q Consensus 178 ~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~--~i~~~~~~~~-----~~~k~ 250 (547)
++.+...+..++..++...|++++|||+++ ...+. .++..+. +.. ......... .....+.... ...+.
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~-~~l~~~~-~~~-~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T 2zj8_A 152 SRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELA-EWLNAEL-IVS-DWRPVKLRRGVFYQGFVTWEDGSIDRFSSWE 227 (720)
T ss_dssp CTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHH-HHTTEEE-EEC-CCCSSEEEEEEEETTEEEETTSCEEECSSTT
T ss_pred CCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHH-HHhCCcc-cCC-CCCCCcceEEEEeCCeeeccccchhhhhHHH
Confidence 888999999999888778999999999975 23333 3443211 111 000000000 0000111111 12333
Q ss_pred HHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc----------------------------------cceEEEcCCC
Q 008956 251 RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ----------------------------------FGAAAIHGDK 296 (547)
Q Consensus 251 ~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~----------------------------------~~~~~ihg~~ 296 (547)
..+.+.+. .+.++||||++++.++.+++.|.+. ..+..+|+++
T Consensus 228 ~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l 304 (720)
T 2zj8_A 228 ELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGL 304 (720)
T ss_dssp HHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTS
T ss_pred HHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCC
Confidence 44444443 4579999999999999999988642 2489999999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE----cC----CCCChhhhHhhhccccCCC--CceEEEEEe
Q 008956 297 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YD----FPTGVEDYVHRIGRTGRAG--ATGVAYTFF 366 (547)
Q Consensus 297 ~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~----~d----~p~s~~~yiQriGR~gR~g--~~g~~~~l~ 366 (547)
++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++
T Consensus 305 ~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 384 (720)
T 2zj8_A 305 GRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVS 384 (720)
T ss_dssp CHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEEC
T ss_pred CHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEe
Confidence 9999999999999999999999999999999999999998 76 5889999999999999998 578999999
Q ss_pred cCCC
Q 008956 367 GDQD 370 (547)
Q Consensus 367 ~~~~ 370 (547)
++.+
T Consensus 385 ~~~~ 388 (720)
T 2zj8_A 385 TSDD 388 (720)
T ss_dssp SSSC
T ss_pred cCcc
Confidence 8776
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.8e-46 Score=415.24 Aligned_cols=340 Identities=20% Similarity=0.254 Sum_probs=223.4
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHH
Q 008956 30 LREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDE 109 (547)
Q Consensus 30 ~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~ 109 (547)
.+.+..+||.+|+|+|.++++.+++++++|+++|||+|||++|++|++..+..... ..+.++|||+||++|+.||.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--TCCCCEEEECSSHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--CCCCeEEEEECCHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999999988765321 1236899999999999999999
Q ss_pred HHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCc-CCCCeeEEEEecccccccCCc-HHHHHH
Q 008956 110 AVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQVSYLVLDEADRMLDMGF-EPQIRK 187 (547)
Q Consensus 110 ~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~-~l~~~~~lVlDEaH~ll~~g~-~~~i~~ 187 (547)
+.+++...++.+..++|+.........+...++|+|+||++|.+.+....+ .+.++++|||||||++.+... ...+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999998778999999998877777777767899999999999999987766 688999999999999886642 222222
Q ss_pred HHHh-----CCCCceEEEEeccCc-------HHHHHHHHHh----------------------cCCCeEEEeCcccccc-
Q 008956 188 IVKE-----VPARRQTLMYTATWP-------REVRKIAADL----------------------LVNPVQVNIGNVDELA- 232 (547)
Q Consensus 188 i~~~-----l~~~~q~l~~SAT~~-------~~~~~~~~~~----------------------l~~~~~i~i~~~~~~~- 232 (547)
.+.. ..+..++|++|||+. .+....+..+ ...|............
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2222 245689999999986 2222111111 1112111100000000
Q ss_pred ---------------------c----------------------------------------------------------
Q 008956 233 ---------------------A---------------------------------------------------------- 233 (547)
Q Consensus 233 ---------------------~---------------------------------------------------------- 233 (547)
.
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence 0
Q ss_pred -----------------------------ccceeEEEEE----------------cCccchHHHHHHHHHhc---CCCCe
Q 008956 234 -----------------------------NKAITQHIEV----------------LAPMDKHRRLEQILRSQ---EPGSK 265 (547)
Q Consensus 234 -----------------------------~~~i~~~~~~----------------~~~~~k~~~l~~~l~~~---~~~~k 265 (547)
...+.+.+.. .....|...|..++... ..+.+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 0000000000 01344666677777654 35679
Q ss_pred EEEEcCChHHHHHHHHHHhcc-----cceEEE--------cCCCCHHHHHHHHHHhhc-CCCcEEEEccccccCCCCCCc
Q 008956 266 IIVFCSTKKMCDQLARNLTRQ-----FGAAAI--------HGDKSQSERDYVLNQFRA-GRSPVLVATDVAARGLDIKDI 331 (547)
Q Consensus 266 ~IVF~~s~~~~~~l~~~L~~~-----~~~~~i--------hg~~~~~~R~~~l~~F~~-g~~~ILVaT~~~~~GiDip~v 331 (547)
+||||+++..++.+++.|++. +.+..+ |++|++.+|..+++.|++ |+++|||||+++++|||+|++
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 999999999999999999865 677777 569999999999999998 999999999999999999999
Q ss_pred cEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHH
Q 008956 332 RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRY 373 (547)
Q Consensus 332 ~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~ 373 (547)
++||+||+|+++++|+||+|| ||. +.|.++.|++..+...
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 999999999999999999999 998 7899999998765533
No 23
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3e-44 Score=402.72 Aligned_cols=337 Identities=21% Similarity=0.295 Sum_probs=262.6
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEE
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVL 94 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vL 94 (547)
+..+|++++||+.+.+.+...||.+|+|+|.++++. +.+++++++++|||||||+++.++++..+... +.++|
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------~~~il 79 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------GGKAI 79 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CSEEE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------CCeEE
Confidence 346899999999999999999999999999999999 78899999999999999999999999876531 56999
Q ss_pred EEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccc
Q 008956 95 VLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 174 (547)
Q Consensus 95 il~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH 174 (547)
|++|+++|+.|+++.++.+. ..++.+..++|+....... ...++|+|+||++|..++......+.++++|||||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 99999999999999996554 3468888888877654431 2368999999999999888766668899999999999
Q ss_pred ccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccc--------eeEEEEEcC-
Q 008956 175 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA--------ITQHIEVLA- 245 (547)
Q Consensus 175 ~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~--------i~~~~~~~~- 245 (547)
++.+..+...+..++..++ ..|++++|||+++ ...+. .++..+. +... ......... ....+....
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~-~~l~~~~-~~~~-~r~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIA-KWLGAEP-VATN-WRPVPLIEGVIYPERKKKEYNVIFKDN 230 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHH-HHHTCEE-EECC-CCSSCEEEEEEEECSSTTEEEEEETTS
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHH-HHhCCCc-cCCC-CCCCCceEEEEecCCcccceeeecCcc
Confidence 9988888888888887776 7899999999974 23333 3443221 1110 000000000 000111111
Q ss_pred -------ccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc--------------------------------
Q 008956 246 -------PMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-------------------------------- 286 (547)
Q Consensus 246 -------~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-------------------------------- 286 (547)
...+...+.+.+ ..+.++||||+++++++.+++.|.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 307 (715)
T 2va8_A 231 TTKKVHGDDAIIAYTLDSL---SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELL 307 (715)
T ss_dssp CEEEEESSSHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHH
T ss_pred hhhhcccchHHHHHHHHHH---hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHH
Confidence 122333333333 45689999999999999999998753
Q ss_pred -----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE----cC-------CCCChhhhHhhh
Q 008956 287 -----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YD-------FPTGVEDYVHRI 350 (547)
Q Consensus 287 -----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~----~d-------~p~s~~~yiQri 350 (547)
..+..+|+++++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+
T Consensus 308 ~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~ 387 (715)
T 2va8_A 308 KSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMS 387 (715)
T ss_dssp HHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHH
T ss_pred HHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHh
Confidence 24889999999999999999999999999999999999999999999999 99 789999999999
Q ss_pred ccccCCC--CceEEEEEecCCC
Q 008956 351 GRTGRAG--ATGVAYTFFGDQD 370 (547)
Q Consensus 351 GR~gR~g--~~g~~~~l~~~~~ 370 (547)
|||||.| ..|.|++++++.+
T Consensus 388 GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 388 GRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTBCCTTTCSCEEEEEECSCGG
T ss_pred hhcCCCCCCCCceEEEEeCCch
Confidence 9999988 4799999987655
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.1e-44 Score=405.29 Aligned_cols=334 Identities=22% Similarity=0.280 Sum_probs=261.5
Q ss_pred CCccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 19 SFDATG--FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 19 ~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
+|++++ |++.+.+.+...||.+|+|+|.++++.+++++++++++|||||||+++.++++..+.. +.++||+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------~~~~l~i 74 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-------GGKSLYV 74 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------TCCEEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------CCcEEEE
Confidence 688888 9999999999999999999999999999999999999999999999999999987654 5699999
Q ss_pred cCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccc
Q 008956 97 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 176 (547)
Q Consensus 97 ~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~l 176 (547)
+|+++|+.|+++.++++. ..++.+..++|+...... ....++|+|+||++|..++......+.++++|||||||++
T Consensus 75 ~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 75 VPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp ESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGG
T ss_pred eCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeec
Confidence 999999999999996554 347888888887665432 1236899999999999988876666889999999999999
Q ss_pred ccCCcHHHHHHHHHhC---CCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccc--eeEEEEEcCc-----
Q 008956 177 LDMGFEPQIRKIVKEV---PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA--ITQHIEVLAP----- 246 (547)
Q Consensus 177 l~~g~~~~i~~i~~~l---~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~--i~~~~~~~~~----- 246 (547)
.++++...+..++..+ .+..|++++|||+++ ..++. .++..+. +... ......... ....+.....
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~-~~l~~~~-~~~~-~r~~~l~~~~~~~~~~~~~~~~~~~~ 226 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLDADY-YVSD-WRPVPLVEGVLCEGTLELFDGAFSTS 226 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTTCEE-EECC-CCSSCEEEEEECSSEEEEEETTEEEE
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHH-HHhCCCc-ccCC-CCCccceEEEeeCCeeeccCcchhhh
Confidence 9988888877776655 568899999999985 34444 3443221 1111 000000000 0000111111
Q ss_pred --cchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-------------------------------cceEEEc
Q 008956 247 --MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-------------------------------FGAAAIH 293 (547)
Q Consensus 247 --~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-------------------------------~~~~~ih 293 (547)
..+...+.+.+. .+.++||||+++++++.+++.|.+. +.+..+|
T Consensus 227 ~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h 303 (702)
T 2p6r_A 227 RRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 303 (702)
T ss_dssp EECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEEC
T ss_pred hhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEec
Confidence 113444444443 4579999999999999999988642 3588999
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE----cC---CCCChhhhHhhhccccCCC--CceEEEE
Q 008956 294 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YD---FPTGVEDYVHRIGRTGRAG--ATGVAYT 364 (547)
Q Consensus 294 g~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~----~d---~p~s~~~yiQriGR~gR~g--~~g~~~~ 364 (547)
+++++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+||+||.| ..|.|++
T Consensus 304 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 383 (702)
T 2p6r_A 304 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAII 383 (702)
T ss_dssp TTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEE
Confidence 9999999999999999999999999999999999999999998 66 6889999999999999998 5789999
Q ss_pred EecCCC
Q 008956 365 FFGDQD 370 (547)
Q Consensus 365 l~~~~~ 370 (547)
++++.+
T Consensus 384 l~~~~~ 389 (702)
T 2p6r_A 384 IVGKRD 389 (702)
T ss_dssp ECCGGG
T ss_pred EecCcc
Confidence 998765
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-44 Score=416.72 Aligned_cols=328 Identities=18% Similarity=0.233 Sum_probs=261.6
Q ss_pred CCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 19 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 19 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
.|..+++++.+...+....+..|+|+|.++|+.+++++++|++||||||||++|++|++..+.. ++++||++|
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-------g~rvlvl~P 235 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------KQRVIYTSP 235 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-------TCEEEEEES
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-------CCeEEEEcC
Confidence 5677777777777777778889999999999999999999999999999999999999988755 679999999
Q ss_pred cHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccccc
Q 008956 99 TRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 178 (547)
Q Consensus 99 tr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~ 178 (547)
|++|+.|+++.+.+++. .+..++|+... ...++|+|+||++|.+.+......+.++++|||||||+|.+
T Consensus 236 traLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 236 IKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp SHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred cHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 99999999999999876 34456666542 34589999999999999988777788999999999999999
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEeccCcHH--HHHHHHHhcCCCeEEEeCcccccccccceeEEEEE---------cCc-
Q 008956 179 MGFEPQIRKIVKEVPARRQTLMYTATWPRE--VRKIAADLLVNPVQVNIGNVDELAANKAITQHIEV---------LAP- 246 (547)
Q Consensus 179 ~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~--~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~---------~~~- 246 (547)
+++...+..++..++...|+|+||||+++. +..++......+..+......... +..++.. +..
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p----l~~~~~~~~~~~~~~~vd~~ 380 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP----LQHYLFPAHGDGIYLVVDEK 380 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC----EEEEEEETTSSCCEEEEETT
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc----ceEEEeecCCcceeeeeccc
Confidence 999999999999999999999999998764 446666666555554433222111 1111100 000
Q ss_pred ---------------------------------------------cchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHH
Q 008956 247 ---------------------------------------------MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLAR 281 (547)
Q Consensus 247 ---------------------------------------------~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~ 281 (547)
..+...+...+... ...++||||++++.|+.++.
T Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la~ 459 (1108)
T 3l9o_A 381 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELAL 459 (1108)
T ss_dssp TEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHHH
Confidence 11112233333332 34699999999999999999
Q ss_pred HHhcc-c---------------------------------------ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccc
Q 008956 282 NLTRQ-F---------------------------------------GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV 321 (547)
Q Consensus 282 ~L~~~-~---------------------------------------~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~ 321 (547)
.|... + .+..+|++|++.+|+.+++.|++|.++|||||++
T Consensus 460 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~v 539 (1108)
T 3l9o_A 460 KMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATET 539 (1108)
T ss_dssp HTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcH
Confidence 88541 1 2789999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEcCCCC--------ChhhhHhhhccccCCC--CceEEEEEecCC
Q 008956 322 AARGLDIKDIRVVVNYDFPT--------GVEDYVHRIGRTGRAG--ATGVAYTFFGDQ 369 (547)
Q Consensus 322 ~~~GiDip~v~~VI~~d~p~--------s~~~yiQriGR~gR~g--~~g~~~~l~~~~ 369 (547)
+++|||+|++++||+++.|+ ++.+|+||+|||||.| ..|.|++++.+.
T Consensus 540 la~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 540 FSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999877654 5667999999999999 678999888765
No 26
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=8.8e-45 Score=396.49 Aligned_cols=323 Identities=20% Similarity=0.251 Sum_probs=253.8
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 35 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 35 ~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
..|| .|||+|..++|.+++|+ |+.++||+|||++|++|++..... ++.++||+||++||.|+++++..+.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-------g~~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-------GKGVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 4699 99999999999999999 999999999999999999854433 5689999999999999999999999
Q ss_pred cCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcC------CcCCCCeeEEEEecccccc-cCC------
Q 008956 115 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRML-DMG------ 180 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEaH~ll-~~g------ 180 (547)
...++++.+++|+.+... +....+|+|+|+||++| .+++... .+.+..+.++||||||+|| +++
T Consensus 149 ~~lgl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIi 226 (844)
T 1tf5_A 149 EFLGLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 226 (844)
T ss_dssp HHTTCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred hhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhh
Confidence 888999999999986543 33344699999999999 7776643 3557889999999999998 764
Q ss_pred ---------cHHHHHHHHHhCC---------CCceEE-----------------EEeccCcH---HHHHHH--HHhcCCC
Q 008956 181 ---------FEPQIRKIVKEVP---------ARRQTL-----------------MYTATWPR---EVRKIA--ADLLVNP 220 (547)
Q Consensus 181 ---------~~~~i~~i~~~l~---------~~~q~l-----------------~~SAT~~~---~~~~~~--~~~l~~~ 220 (547)
|...+..|+..++ +.+|++ +||||.+. .+...+ ..++...
T Consensus 227 sg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d 306 (844)
T 1tf5_A 227 SGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKD 306 (844)
T ss_dssp EEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBT
T ss_pred cCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcC
Confidence 6788999999997 368887 89999774 333322 2222211
Q ss_pred e-EE-------EeC-----------------------------cccc---------------------------------
Q 008956 221 V-QV-------NIG-----------------------------NVDE--------------------------------- 230 (547)
Q Consensus 221 ~-~i-------~i~-----------------------------~~~~--------------------------------- 230 (547)
. .+ .+. ....
T Consensus 307 ~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~ 386 (844)
T 1tf5_A 307 VDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRN 386 (844)
T ss_dssp TTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred CceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHH
Confidence 0 00 000 0000
Q ss_pred --------cccccc-e---eEEEEEcCccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCC
Q 008956 231 --------LAANKA-I---TQHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDK 296 (547)
Q Consensus 231 --------~~~~~~-i---~~~~~~~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~ 296 (547)
.+.+.. + .+.+......+|...+...+... ..+.++||||+|++.++.|++.|++. +++.++|+++
T Consensus 387 iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~ 466 (844)
T 1tf5_A 387 IYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN 466 (844)
T ss_dssp HHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC
T ss_pred HhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCc
Confidence 000000 0 01123445567777787777653 44678999999999999999999865 9999999999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEccccccCCCCC--------CccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecC
Q 008956 297 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIK--------DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGD 368 (547)
Q Consensus 297 ~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip--------~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~ 368 (547)
++.++..+.+.|+.+ .|||||++++||+||+ ++.+||+|++|.+.+.|+||+|||||+|.+|.+++|++.
T Consensus 467 ~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~ 544 (844)
T 1tf5_A 467 HEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSM 544 (844)
T ss_dssp HHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEET
T ss_pred cHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecH
Confidence 988888777666655 6999999999999999 788999999999999999999999999999999999987
Q ss_pred CCh
Q 008956 369 QDS 371 (547)
Q Consensus 369 ~~~ 371 (547)
.|.
T Consensus 545 eD~ 547 (844)
T 1tf5_A 545 EDE 547 (844)
T ss_dssp TSS
T ss_pred HHH
Confidence 664
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.4e-44 Score=407.50 Aligned_cols=333 Identities=19% Similarity=0.214 Sum_probs=211.0
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 35 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 35 ~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
..++..|+|+|.++++.++.++++|+++|||+|||++|++|++..+..... ..++++|||+||++|+.||++++.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--cCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 347899999999999999999999999999999999999999988776321 125689999999999999999999999
Q ss_pred cCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCc-CCCCeeEEEEecccccccCCcHHH-HHHHHHh-
Q 008956 115 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQVSYLVLDEADRMLDMGFEPQ-IRKIVKE- 191 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~-~l~~~~~lVlDEaH~ll~~g~~~~-i~~i~~~- 191 (547)
...++.+..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+.... +..++..
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8778999999999987777777777899999999999999987777 788999999999999987653332 2233222
Q ss_pred ---CCCCceEEEEeccCcH-----------HHHHHHHHh------------------cCCCeEEEeCcccccccc-----
Q 008956 192 ---VPARRQTLMYTATWPR-----------EVRKIAADL------------------LVNPVQVNIGNVDELAAN----- 234 (547)
Q Consensus 192 ---l~~~~q~l~~SAT~~~-----------~~~~~~~~~------------------l~~~~~i~i~~~~~~~~~----- 234 (547)
..+..+++++|||+.. .+..+...+ +..+..............
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 1456899999999852 222222211 111111100000000000
Q ss_pred ------------cce-------eEEEE-----------------------------------------------------
Q 008956 235 ------------KAI-------TQHIE----------------------------------------------------- 242 (547)
Q Consensus 235 ------------~~i-------~~~~~----------------------------------------------------- 242 (547)
... .....
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000 00000
Q ss_pred -----------------------------------------------EcCccchHHHHHHHHHhc---CCCCeEEEEcCC
Q 008956 243 -----------------------------------------------VLAPMDKHRRLEQILRSQ---EPGSKIIVFCST 272 (547)
Q Consensus 243 -----------------------------------------------~~~~~~k~~~l~~~l~~~---~~~~k~IVF~~s 272 (547)
......|...|..++... ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 000123444555555542 456899999999
Q ss_pred hHHHHHHHHHHhcc-------------cceEEEcCCCCHHHHHHHHHHhhc-CCCcEEEEccccccCCCCCCccEEEEcC
Q 008956 273 KKMCDQLARNLTRQ-------------FGAAAIHGDKSQSERDYVLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYD 338 (547)
Q Consensus 273 ~~~~~~l~~~L~~~-------------~~~~~ihg~~~~~~R~~~l~~F~~-g~~~ILVaT~~~~~GiDip~v~~VI~~d 338 (547)
+..++.+++.|++. ..+..+|+++++.+|..+++.|++ |.++|||||+++++|||+|++++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999752 245667899999999999999999 9999999999999999999999999999
Q ss_pred CCCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 339 FPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 339 ~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
+|+++..|+||+|| ||. ++|.+++|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999 999 88999999976544
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-42 Score=369.67 Aligned_cols=323 Identities=25% Similarity=0.326 Sum_probs=248.9
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
+|+|||.++++.++++ ++|+.+|||+|||++++++++..+.. .+.++|||+|+++|+.||.+++.++......
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK------YGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH------SCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 7999999999999999 99999999999999999998887652 2568999999999999999999999865556
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEE
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 199 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l 199 (547)
.+..+.|+...... ......++|+|+||+.|...+....+.+.++++|||||||++.+......+...+....+..+++
T Consensus 82 ~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 82 KIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp GEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred heEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 77778877665433 23334579999999999999888788889999999999999987655555555565566778899
Q ss_pred EEeccCcH---HHHHHHHHhcCCCeEEEeCcccccccc--cceeEEEEE-------------------------------
Q 008956 200 MYTATWPR---EVRKIAADLLVNPVQVNIGNVDELAAN--KAITQHIEV------------------------------- 243 (547)
Q Consensus 200 ~~SAT~~~---~~~~~~~~~l~~~~~i~i~~~~~~~~~--~~i~~~~~~------------------------------- 243 (547)
++|||+.. .+..++..+......+........... .........
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999973 334444433222111111000000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008956 244 -------------------------------------------------------------------------------- 243 (547)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (547)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 241 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhh
Confidence
Q ss_pred ------------------cCccchHHHHHHHHHhc---CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcC-------
Q 008956 244 ------------------LAPMDKHRRLEQILRSQ---EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG------- 294 (547)
Q Consensus 244 ------------------~~~~~k~~~l~~~l~~~---~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg------- 294 (547)
.....|...+.+++... ..+.++||||+++..++.+++.|.+. +.+..+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~ 400 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 400 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC---
T ss_pred hhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccccc
Confidence 02233555566666653 46789999999999999999999875 88999999
Q ss_pred -CCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 295 -DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 295 -~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
+++..+|..+++.|++++++|||||+++++|||+|++++||++|+||++..|+||+||++|.|+ |.++.|+++.+.
T Consensus 401 ~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 401 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp ----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred ccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999987653
No 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.6e-43 Score=402.40 Aligned_cols=333 Identities=19% Similarity=0.223 Sum_probs=209.9
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 35 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 35 ~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
..++.+|+|+|.++++.+++++++|+++|||+|||++|++|++..+..... ..++++|||+||++|+.||++++.+++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA--GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS--SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc--cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 347889999999999999999999999999999999999998877655321 125689999999999999999999999
Q ss_pred cCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCc-CCCCeeEEEEecccccccCCcHH-HHHHHHHh-
Q 008956 115 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQVSYLVLDEADRMLDMGFEP-QIRKIVKE- 191 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~-~l~~~~~lVlDEaH~ll~~g~~~-~i~~i~~~- 191 (547)
...++.+..++|+.........+...++|+|+||++|.+.+....+ .+.++++|||||||++.+.+... .+..++..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8778999999999876666566666789999999999999987766 68889999999999998775322 22233322
Q ss_pred ---CCCCceEEEEeccCcH-----------HHHHHHHHh------------------cCCCeEEEeCccccccc------
Q 008956 192 ---VPARRQTLMYTATWPR-----------EVRKIAADL------------------LVNPVQVNIGNVDELAA------ 233 (547)
Q Consensus 192 ---l~~~~q~l~~SAT~~~-----------~~~~~~~~~------------------l~~~~~i~i~~~~~~~~------ 233 (547)
..+..+++++|||+.. .+..+...+ +..+.............
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 2456899999999842 222222111 11121111100000000
Q ss_pred -----------ccc-----eeEEE--E-----------------------------------------------------
Q 008956 234 -----------NKA-----ITQHI--E----------------------------------------------------- 242 (547)
Q Consensus 234 -----------~~~-----i~~~~--~----------------------------------------------------- 242 (547)
... +.+.. .
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000 00000 0
Q ss_pred -----------------------------------------------EcCccchHHHHHHHHHhc---CCCCeEEEEcCC
Q 008956 243 -----------------------------------------------VLAPMDKHRRLEQILRSQ---EPGSKIIVFCST 272 (547)
Q Consensus 243 -----------------------------------------------~~~~~~k~~~l~~~l~~~---~~~~k~IVF~~s 272 (547)
......|...|.+++.+. ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 000123444555566553 456899999999
Q ss_pred hHHHHHHHHHHhcc-------------cceEEEcCCCCHHHHHHHHHHhhc-CCCcEEEEccccccCCCCCCccEEEEcC
Q 008956 273 KKMCDQLARNLTRQ-------------FGAAAIHGDKSQSERDYVLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYD 338 (547)
Q Consensus 273 ~~~~~~l~~~L~~~-------------~~~~~ihg~~~~~~R~~~l~~F~~-g~~~ILVaT~~~~~GiDip~v~~VI~~d 338 (547)
+++++.+++.|.+. .....+|++|++.+|..+++.|++ |+++|||||+++++|||+|++++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999863 234566899999999999999999 9999999999999999999999999999
Q ss_pred CCCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 339 FPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 339 ~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
+|+|+..|+||+|| ||. +.|.++.|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999 999 78899999876543
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-42 Score=391.90 Aligned_cols=310 Identities=19% Similarity=0.259 Sum_probs=248.6
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 36 AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 36 ~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
.+| +|+|+|.++++.+++++++++++|||+|||++|+++++..+.. +.++||++|+++|+.|+++++.+++.
T Consensus 83 ~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-------g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 83 YPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------KQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp CSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-------TCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-------CCeEEEECChHHHHHHHHHHHHHHhC
Confidence 355 5999999999999999999999999999999999998887754 57999999999999999999999876
Q ss_pred CCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCC
Q 008956 116 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 195 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~ 195 (547)
.+..++|+.... ..++|+|+||++|.+.+......+.++++|||||||++.++++...+..++..++..
T Consensus 155 ----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 455677766432 357999999999999988877788999999999999999999999999999999999
Q ss_pred ceEEEEeccCcHHHH--HHHHHhcCCCeEEEeCcccccccccceeEEEEE---------cCc------------------
Q 008956 196 RQTLMYTATWPREVR--KIAADLLVNPVQVNIGNVDELAANKAITQHIEV---------LAP------------------ 246 (547)
Q Consensus 196 ~q~l~~SAT~~~~~~--~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~---------~~~------------------ 246 (547)
.|+|++|||+++... ..+......+..+....... ..+.+++.. +..
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp----~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP----TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS----SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc----ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 999999999986432 34443444454443332211 111111111 000
Q ss_pred ----------------------------cchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc------------
Q 008956 247 ----------------------------MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ------------ 286 (547)
Q Consensus 247 ----------------------------~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~------------ 286 (547)
......+...+... ...++||||++++.|+.+++.|...
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 378 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 378 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 11112233333332 2358999999999999999988651
Q ss_pred ----------------------------cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE--
Q 008956 287 ----------------------------FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN-- 336 (547)
Q Consensus 287 ----------------------------~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~-- 336 (547)
..+..+||++++.+|+.+++.|++|.++|||||+++++|||+|++++||+
T Consensus 379 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~ 458 (1010)
T 2xgj_A 379 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV 458 (1010)
T ss_dssp HHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCS
T ss_pred HHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCC
Confidence 13788999999999999999999999999999999999999999999999
Q ss_pred --cCC----CCChhhhHhhhccccCCCC--ceEEEEEecCC
Q 008956 337 --YDF----PTGVEDYVHRIGRTGRAGA--TGVAYTFFGDQ 369 (547)
Q Consensus 337 --~d~----p~s~~~yiQriGR~gR~g~--~g~~~~l~~~~ 369 (547)
||. |.++.+|+||+||+||.|. .|.|++++++.
T Consensus 459 ~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 459 RKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred cccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 999 8999999999999999996 59999999865
No 31
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.8e-43 Score=389.75 Aligned_cols=347 Identities=20% Similarity=0.271 Sum_probs=260.5
Q ss_pred HHHHH-HHHCCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcH
Q 008956 28 ELLRE-VHNAGFSSPTPIQAQSWPIALQS------RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 100 (547)
Q Consensus 28 ~l~~~-l~~~g~~~~~~~Q~~~i~~il~g------~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr 100 (547)
.+++. +...+| +||++|.++|+.++++ .++|++++||||||++|++|++..+.. +.++||++||+
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-------g~qvlvlaPtr 427 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-------GFQTAFMVPTS 427 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-------TSCEEEECSCH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCcH
Confidence 44444 567799 9999999999999875 589999999999999999999988765 67999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEecCCCCChh---hHHHhhCC-CcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccc
Q 008956 101 ELATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 176 (547)
Q Consensus 101 ~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~l 176 (547)
+|+.|+++.+.+++...++++..++|+....+ .+..+..+ ++|+|+||+.|.+ .+.+.++++|||||+|++
T Consensus 428 ~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 428 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchh
Confidence 99999999999999888899999999887554 34455554 9999999998854 566889999999999996
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHH
Q 008956 177 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI 256 (547)
Q Consensus 177 l~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 256 (547)
... ....+.......++++||||+.+....+.. ..+.....+..... ....+. ..... ..+...+...
T Consensus 503 g~~-----qr~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~--~r~~i~--~~~~~-~~~~~~l~~~ 570 (780)
T 1gm5_A 503 GVK-----QREALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPP--GRKEVQ--TMLVP-MDRVNEVYEF 570 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCS--SCCCCE--ECCCC-SSTHHHHHHH
T ss_pred hHH-----HHHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCC--CCcceE--EEEec-cchHHHHHHH
Confidence 321 122222333468999999998766554432 22211111111100 011111 11222 2233334444
Q ss_pred H-HhcCCCCeEEEEcCChH--------HHHHHHHHHhc-c---cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccc
Q 008956 257 L-RSQEPGSKIIVFCSTKK--------MCDQLARNLTR-Q---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 323 (547)
Q Consensus 257 l-~~~~~~~k~IVF~~s~~--------~~~~l~~~L~~-~---~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~ 323 (547)
+ +....+.+++|||++++ .++.+++.|.+ . +.+..+||+|++.+|+.+++.|++|+++|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 4 44566789999999764 47788888887 3 5789999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEEcCCCC-ChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHHHHHHHcCC
Q 008956 324 RGLDIKDIRVVVNYDFPT-GVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGG 400 (547)
Q Consensus 324 ~GiDip~v~~VI~~d~p~-s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l~~l~~~~~ 400 (547)
+|||+|++++||+++.|. +...|+||+||+||.|++|.|++++++. .......++.++...+.+.....++..|+.
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~-~~~~~~rl~~l~~~~dgf~iae~dL~~Rg~ 727 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV-GEEAMERLRFFTLNTDGFKIAEYDLKTRGP 727 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC-CHHHHHHHHHHHTCCCSHHHHHHHHHSSCC
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC-ChHHHHHHHHHHhhhccchhhHhhHhccCc
Confidence 999999999999999996 7899999999999999999999998843 344455566777777777666677776643
No 32
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8.1e-43 Score=402.64 Aligned_cols=318 Identities=22% Similarity=0.319 Sum_probs=257.1
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 35 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 35 ~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
..+| +|||+|.++++.+++++++|++||||||||++|+++++..+.. ++++|||+||++|+.|+++.+.++.
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-------~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-------GKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-------TCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------CCeEEEEechHHHHHHHHHHHHHhh
Confidence 3577 7999999999999999999999999999999888887777633 6799999999999999999999977
Q ss_pred cCCceEEEEecCCCCC---hhhHHHhhCC-CcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccc----------cc-C
Q 008956 115 KSSRISCTCLYGGAPK---GPQLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM----------LD-M 179 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~~---~~~~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~l----------l~-~ 179 (547)
..++.+..++|+... ..++..+..+ ++|+|+||++|.+++.. +.+.++++|||||||++ ++ +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 678899999999887 6667777776 99999999999887764 66778999999999754 45 8
Q ss_pred CcHHH-HHHHHHhCC-----------CCceEEEEecc-CcHHHH-HHHHHhcCCCeEEEeCcccccccccceeEEEEEcC
Q 008956 180 GFEPQ-IRKIVKEVP-----------ARRQTLMYTAT-WPREVR-KIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA 245 (547)
Q Consensus 180 g~~~~-i~~i~~~l~-----------~~~q~l~~SAT-~~~~~~-~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~ 245 (547)
+|... +..++..++ ...|+++|||| +|..+. .+....+. +.+.. .......+.+.+...
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~--~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR--LVSVARNITHVRISS- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCB--CCCCCCCEEEEEESC-
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEecc--CCCCcCCceeEEEec-
Confidence 88888 888888877 78999999999 565544 23333332 11111 112233344544333
Q ss_pred ccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceE-EEcCCCCHHHHHHHHHHhhcCCCcEEEE----c
Q 008956 246 PMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA-AIHGDKSQSERDYVLNQFRAGRSPVLVA----T 319 (547)
Q Consensus 246 ~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~-~ihg~~~~~~R~~~l~~F~~g~~~ILVa----T 319 (547)
++...+..++... +.++||||+++..++.+++.|+.. +.+. .+|+ +|.+ ++.|++|+++|||| |
T Consensus 296 --~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~T 365 (1104)
T 4ddu_A 296 --RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYY 365 (1104)
T ss_dssp --CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTH
T ss_pred --CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCC
Confidence 5666777777774 379999999999999999999865 7887 8898 2455 99999999999999 9
Q ss_pred cccccCCCCCC-ccEEEEcCCCC---------------------------------------------------------
Q 008956 320 DVAARGLDIKD-IRVVVNYDFPT--------------------------------------------------------- 341 (547)
Q Consensus 320 ~~~~~GiDip~-v~~VI~~d~p~--------------------------------------------------------- 341 (547)
+++++|||+|+ |++|||||+|.
T Consensus 366 dvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~ 445 (1104)
T 4ddu_A 366 GKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMF 445 (1104)
T ss_dssp HHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_pred CeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhcc
Confidence 99999999999 99999999998
Q ss_pred ---------------ChhhhHhhhccccCCCC----ceEEEEEecCCChHHHHHHHHHHH
Q 008956 342 ---------------GVEDYVHRIGRTGRAGA----TGVAYTFFGDQDSRYASDLIKLLE 382 (547)
Q Consensus 342 ---------------s~~~yiQriGR~gR~g~----~g~~~~l~~~~~~~~~~~l~~~l~ 382 (547)
++.+|+||+|||||.+. +|.+++++ .|....+.+.+.+.
T Consensus 446 ~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 446 RGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp CSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 77899999999999654 34455555 77777777777775
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.9e-43 Score=406.51 Aligned_cols=336 Identities=21% Similarity=0.305 Sum_probs=261.5
Q ss_pred CCccCCCCHHHH-----HHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCE
Q 008956 19 SFDATGFPPELL-----REVHN-AGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPT 92 (547)
Q Consensus 19 ~f~~~~l~~~l~-----~~l~~-~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~ 92 (547)
.+...++++.+. +.+.+ .||. | |+|.++|+.+++++|+|+++|||||||+ |++|++..+.. .+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~------~~~~ 101 (1054)
T 1gku_B 31 AASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL------KGKR 101 (1054)
T ss_dssp CCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT------TSCC
T ss_pred cccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh------cCCe
Confidence 344555554433 34443 5999 9 9999999999999999999999999998 88888877654 2569
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCce----EEEEecCCCCChhh---HHHhhCCCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 93 VLVLSPTRELATQIQDEAVKFGKSSRI----SCTCLYGGAPKGPQ---LKDIDRGVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 93 vLil~Ptr~L~~Q~~~~~~~~~~~~~i----~~~~~~g~~~~~~~---~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
+|||+||++|+.|+++.+.+++...++ .+.+++|+.....+ ...+.. ++|+|+||++|.+++.. +.++
T Consensus 102 ~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l 176 (1054)
T 1gku_B 102 CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHF 176 (1054)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCC
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccC
Confidence 999999999999999999999987777 88999999887663 445555 99999999999987664 6689
Q ss_pred eEEEEecccccccCCcHHHHHHHHHhC-----------CCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccc
Q 008956 166 SYLVLDEADRMLDMGFEPQIRKIVKEV-----------PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAAN 234 (547)
Q Consensus 166 ~~lVlDEaH~ll~~g~~~~i~~i~~~l-----------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~ 234 (547)
++|||||||+|++ +...+..++..+ +...|++++|||++.. ..+...++.++..+.+.... ...
T Consensus 177 ~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~--~~~ 251 (1054)
T 1gku_B 177 DFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR--ITV 251 (1054)
T ss_dssp SEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE--ECC
T ss_pred CEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc--cCc
Confidence 9999999999998 457777777766 3567899999999876 43333333322222222211 122
Q ss_pred cceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcccceEEEcCCCCHHHHHHHHHHhhcCCCc
Q 008956 235 KAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSP 314 (547)
Q Consensus 235 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ 314 (547)
..+.+.+. ..++...+..++... +.++||||++++.|+.+++.|++.+.+..+|+++. .+++.|++|+++
T Consensus 252 ~~i~~~~~---~~~k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~~-----~~l~~F~~G~~~ 321 (1054)
T 1gku_B 252 RNVEDVAV---NDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKK-----GDYEKFVEGEID 321 (1054)
T ss_dssp CCEEEEEE---SCCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSS-----HHHHHHHHTSCS
T ss_pred CCceEEEe---chhHHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccHH-----HHHHHHHcCCCc
Confidence 23444433 355666677777665 46899999999999999999987789999999983 678999999999
Q ss_pred EEEE----ccccccCCCCCCc-cEEEEcCCC-------------------------------------------------
Q 008956 315 VLVA----TDVAARGLDIKDI-RVVVNYDFP------------------------------------------------- 340 (547)
Q Consensus 315 ILVa----T~~~~~GiDip~v-~~VI~~d~p------------------------------------------------- 340 (547)
|||| |+++++|||+|+| ++||++|+|
T Consensus 322 VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1054)
T 1gku_B 322 HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILK 401 (1054)
T ss_dssp EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHH
T ss_pred EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999995 999999999
Q ss_pred ----------------------CChhhhHhhhccccCCCCce--EEEEEecCCChHHHHHHHHHHHH
Q 008956 341 ----------------------TGVEDYVHRIGRTGRAGATG--VAYTFFGDQDSRYASDLIKLLEG 383 (547)
Q Consensus 341 ----------------------~s~~~yiQriGR~gR~g~~g--~~~~l~~~~~~~~~~~l~~~l~~ 383 (547)
.+..+|+||+|||||.|..| .+++|+...+......+.+.+..
T Consensus 402 ~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 402 KVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987776 47888887888888888877764
No 34
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.1e-42 Score=376.67 Aligned_cols=319 Identities=20% Similarity=0.241 Sum_probs=229.3
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
|. .|+|+|..+++.+++|+ |+.++||+|||++|++|++..... ++.++||+||++||.|+++++..++..
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-------g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-------GKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-------SSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-------CCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 54 99999999999999998 999999999999999999865433 568999999999999999999999998
Q ss_pred CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcCC------cCCCCeeEEEEecccccc-cCC--------
Q 008956 117 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLNQVSYLVLDEADRML-DMG-------- 180 (547)
Q Consensus 117 ~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEaH~ll-~~g-------- 180 (547)
.++++.+++|+.... .+.+..+|+|+|+||++| .+++.... +.+.++.++||||||+|+ +++
T Consensus 142 lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg 219 (853)
T 2fsf_A 142 LGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISG 219 (853)
T ss_dssp TTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccC
Confidence 899999999997643 344455799999999999 78887542 557889999999999999 543
Q ss_pred -------cHHHHHHHHHhCCC--------------------CceEE------------------------EEeccCcHHH
Q 008956 181 -------FEPQIRKIVKEVPA--------------------RRQTL------------------------MYTATWPREV 209 (547)
Q Consensus 181 -------~~~~i~~i~~~l~~--------------------~~q~l------------------------~~SAT~~~~~ 209 (547)
|...+..|+..++. .+|++ ++|||.+.-.
T Consensus 220 ~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~ 299 (853)
T 2fsf_A 220 PAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLM 299 (853)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred CCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHH
Confidence 56778888888864 45654 8999975422
Q ss_pred HHH---H--HHhcCCC-------------------------------------eEEEeCccccccccccee---------
Q 008956 210 RKI---A--ADLLVNP-------------------------------------VQVNIGNVDELAANKAIT--------- 238 (547)
Q Consensus 210 ~~~---~--~~~l~~~-------------------------------------~~i~i~~~~~~~~~~~i~--------- 238 (547)
..+ + ..++... ..+.+..... ....+.
T Consensus 300 ~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~--tla~It~qnyfr~Y~ 377 (853)
T 2fsf_A 300 HHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQ--TLASITFQNYFRLYE 377 (853)
T ss_dssp ---------------------------------------------------------CCCCCE--EEEEEEHHHHHTTSS
T ss_pred HHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccccc--ccceeehHHHHhhhh
Confidence 111 1 1111100 0111111000 000011
Q ss_pred --------------------------------------EEEEEcCccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHH
Q 008956 239 --------------------------------------QHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQL 279 (547)
Q Consensus 239 --------------------------------------~~~~~~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l 279 (547)
+.+......+|...+...+... ..+.++||||+|++.++.|
T Consensus 378 kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~L 457 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELV 457 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHH
T ss_pred hhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 1123455667888888877653 5668999999999999999
Q ss_pred HHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCc---------------------------
Q 008956 280 ARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI--------------------------- 331 (547)
Q Consensus 280 ~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v--------------------------- 331 (547)
++.|++. +++.++|++..+.++..+.++|+.| .|+|||++++||+||+..
T Consensus 458 s~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (853)
T 2fsf_A 458 SNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQV 535 (853)
T ss_dssp HHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhh
Confidence 9999865 9999999999999998888999888 699999999999999973
Q ss_pred ----------cEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCCh
Q 008956 332 ----------RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDS 371 (547)
Q Consensus 332 ----------~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~ 371 (547)
.+||+++.|.+...|+||+||+||.|.+|.+++|++..|.
T Consensus 536 ~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 536 RHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 6999999999999999999999999999999999987664
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.9e-42 Score=386.05 Aligned_cols=325 Identities=24% Similarity=0.306 Sum_probs=225.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHH-HHHHHHhccCC
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI-QDEAVKFGKSS 117 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~-~~~~~~~~~~~ 117 (547)
.+|+|+|.++++.+++++++|+++|||+|||++|++|++..+...... ..+.++|||+|+++|+.|| .+++.+++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~- 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-SEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-TCCCCBCCEESCSHHHHHHHHHTHHHHHTT-
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-CCCCeEEEEECCHHHHHHHHHHHHHHHcCc-
Confidence 489999999999999999999999999999999999999877653210 1125899999999999999 9999999876
Q ss_pred ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHH------hcCCcCCCCeeEEEEecccccccCCc-HHHHHHHHH
Q 008956 118 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDIL------EMRRISLNQVSYLVLDEADRMLDMGF-EPQIRKIVK 190 (547)
Q Consensus 118 ~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l------~~~~~~l~~~~~lVlDEaH~ll~~g~-~~~i~~i~~ 190 (547)
.+.+..++|+.........+...++|+|+||++|.+.+ ....+.+.++++|||||||++....+ ...+..++.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 47888899988877777777778999999999999887 44456788999999999999865442 222222221
Q ss_pred h-------------CCCCceEEEEeccCcHH-----------HHHHHHHhcCCCeEEEeCcccccccccce-eEEEEEcC
Q 008956 191 E-------------VPARRQTLMYTATWPRE-----------VRKIAADLLVNPVQVNIGNVDELAANKAI-TQHIEVLA 245 (547)
Q Consensus 191 ~-------------l~~~~q~l~~SAT~~~~-----------~~~~~~~~l~~~~~i~i~~~~~~~~~~~i-~~~~~~~~ 245 (547)
. ..+..++|++|||+... +..+...+..................... ...+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 1 11567899999999852 22222222110000000000000000000 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 008956 246 -------------------------------------------------------------------------------- 245 (547)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (547)
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------ccchHHHHHHHHHh----cCCCCeE
Q 008956 246 -------------------------------------------------------PMDKHRRLEQILRS----QEPGSKI 266 (547)
Q Consensus 246 -------------------------------------------------------~~~k~~~l~~~l~~----~~~~~k~ 266 (547)
...|...|..++.. ...+.++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 00111112222222 1226899
Q ss_pred EEEcCChHHHHHHHHHHhcc-------cceEEEcCC--------CCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCc
Q 008956 267 IVFCSTKKMCDQLARNLTRQ-------FGAAAIHGD--------KSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 331 (547)
Q Consensus 267 IVF~~s~~~~~~l~~~L~~~-------~~~~~ihg~--------~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v 331 (547)
||||+++..++.+++.|++. +.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v 483 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKEC 483 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSC
T ss_pred EEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccC
Confidence 99999999999999999874 788999999 999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecC
Q 008956 332 RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGD 368 (547)
Q Consensus 332 ~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~ 368 (547)
++||+||+|+|+..|+||+||++|.| .+++++..
T Consensus 484 ~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 484 NIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 99999999999999999999976654 44444443
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=4.5e-41 Score=390.41 Aligned_cols=322 Identities=22% Similarity=0.237 Sum_probs=255.8
Q ss_pred CCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhC----CC--cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEE
Q 008956 23 TGFPPELLREVHNA-GFSSPTPIQAQSWPIALQ----SR--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 95 (547)
Q Consensus 23 ~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~il~----g~--~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLi 95 (547)
++++....+.+... +| ++||+|.++++.+++ ++ ++|++++||+|||++|+++++..+.. ++++||
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-------g~~vlv 657 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-------HKQVAV 657 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-------TCEEEE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCeEEE
Confidence 34566666666544 66 579999999999987 55 89999999999999999988877654 669999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChh---hHHHhhCC-CcEEEECcHHHHHHHhcCCcCCCCeeEEEEe
Q 008956 96 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSYLVLD 171 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlD 171 (547)
|+||++|+.|+++.+.+++...++.+..+.+.....+ .+..+..+ ++|+|+||+.|. ..+.+.++++||||
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVD 732 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEe
Confidence 9999999999999999988877788888877655433 34445554 999999998663 35678899999999
Q ss_pred cccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHH
Q 008956 172 EADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 251 (547)
Q Consensus 172 EaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 251 (547)
|||++ ......++..++...++++||||+++....+....+.+...+..... ....+...+.. ..+..
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~----~r~~i~~~~~~---~~~~~ 800 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA----RRLAVKTFVRE---YDSMV 800 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC----BCBCEEEEEEE---CCHHH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC----CccccEEEEec---CCHHH
Confidence 99994 34556666777778899999999987777766665544433322111 11123333222 22334
Q ss_pred HHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc---cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCC
Q 008956 252 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDI 328 (547)
Q Consensus 252 ~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~---~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDi 328 (547)
....++.....+.+++|||++++.++.+++.|++. +.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 44555555666789999999999999999999874 579999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCC-CCChhhhHhhhccccCCCCceEEEEEecCC
Q 008956 329 KDIRVVVNYDF-PTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 369 (547)
Q Consensus 329 p~v~~VI~~d~-p~s~~~yiQriGR~gR~g~~g~~~~l~~~~ 369 (547)
|++++||+++. ++++.+|+||+||+||.|+.+.|++++.+.
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999998 579999999999999999999999998653
No 37
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.6e-41 Score=366.42 Aligned_cols=324 Identities=19% Similarity=0.216 Sum_probs=255.8
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 35 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 35 ~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
..|+ .|+|+|..+++.+++|+ |+.++||+|||++|.+|++..... ++.++||+||++||.|.++++..+.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-------g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-------GNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-------TSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 3488 99999999999999998 999999999999999999765443 5689999999999999999999999
Q ss_pred cCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcC------CcCCCCeeEEEEecccccc-cC-------
Q 008956 115 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMR------RISLNQVSYLVLDEADRML-DM------- 179 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEaH~ll-~~------- 179 (547)
...++++.+++|+.+.. .+....+|+|+|+||++| .++|... .+.+..+.++||||||+|| |+
T Consensus 177 ~~lGLsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLii 254 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLII 254 (922)
T ss_dssp HHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEE
T ss_pred hhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceee
Confidence 98999999999987643 333444699999999999 7888754 3567789999999999999 43
Q ss_pred --------CcHHHHHHHHHhCC---------CCceEE-----------------EEeccCcH---HHHHHH--HHhcCCC
Q 008956 180 --------GFEPQIRKIVKEVP---------ARRQTL-----------------MYTATWPR---EVRKIA--ADLLVNP 220 (547)
Q Consensus 180 --------g~~~~i~~i~~~l~---------~~~q~l-----------------~~SAT~~~---~~~~~~--~~~l~~~ 220 (547)
+|...+..|+..++ +.+|++ ++|||.+. .+...+ ..++...
T Consensus 255 Sg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d 334 (922)
T 1nkt_A 255 SGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRD 334 (922)
T ss_dssp EEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBT
T ss_pred cCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcc
Confidence 47889999999998 678998 99999764 333222 1222211
Q ss_pred --------eEEEeCccc---------------------------cccccccee---------------------------
Q 008956 221 --------VQVNIGNVD---------------------------ELAANKAIT--------------------------- 238 (547)
Q Consensus 221 --------~~i~i~~~~---------------------------~~~~~~~i~--------------------------- 238 (547)
..+.+.... +......+.
T Consensus 335 ~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~ 414 (922)
T 1nkt_A 335 KDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHE 414 (922)
T ss_dssp TTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred cceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHH
Confidence 111111000 000000000
Q ss_pred --------------------EEEEEcCccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCC
Q 008956 239 --------------------QHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDK 296 (547)
Q Consensus 239 --------------------~~~~~~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~ 296 (547)
..+......+|...+...+... ..+.++||||+|++.++.|++.|++. +++.++|++.
T Consensus 415 iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~ 494 (922)
T 1nkt_A 415 IYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKY 494 (922)
T ss_dssp HHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred HhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCCh
Confidence 1123344566777777777553 45679999999999999999999865 9999999999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCc---------------------------------------------
Q 008956 297 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI--------------------------------------------- 331 (547)
Q Consensus 297 ~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v--------------------------------------------- 331 (547)
.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 495 ~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (922)
T 1nkt_A 495 HEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAK 572 (922)
T ss_dssp HHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhh
Confidence 888888888888877 699999999999999975
Q ss_pred -------cEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChH
Q 008956 332 -------RVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSR 372 (547)
Q Consensus 332 -------~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~ 372 (547)
.+||+++.|.+...|+||+||+||.|.+|.+++|++..|.-
T Consensus 573 ~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 573 EVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp HHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred HHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 59999999999999999999999999999999999887753
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.7e-40 Score=376.68 Aligned_cols=305 Identities=19% Similarity=0.224 Sum_probs=238.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
+|+|+|.++|+.+++++++++++|||+|||++|++++...+.. +.++||++|+++|+.|+++.+.+++. ++
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-------g~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-------MTKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-------TCEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-------CCeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 6899999999999999999999999999999999988877654 56999999999999999999998764 46
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEE
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 199 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l 199 (547)
.+..++|+.... ..++|+|+||++|.+.+......+.++++|||||||++.++++...+..++..+++..|+|
T Consensus 110 ~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 110 NIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp CEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred eEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE
Confidence 677788876432 3479999999999999887777788999999999999999999999999999999999999
Q ss_pred EEeccCcHHH--HHHHHHhcCCCeEEEeCcccccccccceeEEE------------------------------------
Q 008956 200 MYTATWPREV--RKIAADLLVNPVQVNIGNVDELAANKAITQHI------------------------------------ 241 (547)
Q Consensus 200 ~~SAT~~~~~--~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~------------------------------------ 241 (547)
++|||+++.. .+.+......+..+......... +.+++
T Consensus 183 lLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~p----l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (997)
T 4a4z_A 183 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVP----LEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGA 258 (997)
T ss_dssp EEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSC----EEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------
T ss_pred EEcCCCCChHHHHHHHhcccCCceEEEecCCCCcc----ceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccc
Confidence 9999987543 22222111122222111110000 00000
Q ss_pred ---------------------------------------------------------EEcCccchHHHHHHHHHhcCCCC
Q 008956 242 ---------------------------------------------------------EVLAPMDKHRRLEQILRSQEPGS 264 (547)
Q Consensus 242 ---------------------------------------------------------~~~~~~~k~~~l~~~l~~~~~~~ 264 (547)
.......+...+...+.... ..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~-~~ 337 (997)
T 4a4z_A 259 PSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRE-LL 337 (997)
T ss_dssp ----------------------------------------------------------CCCCTTHHHHHHHHHHHTT-CC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCC-CC
Confidence 00012233445555665543 46
Q ss_pred eEEEEcCChHHHHHHHHHHhcc-c---------------------------------------ceEEEcCCCCHHHHHHH
Q 008956 265 KIIVFCSTKKMCDQLARNLTRQ-F---------------------------------------GAAAIHGDKSQSERDYV 304 (547)
Q Consensus 265 k~IVF~~s~~~~~~l~~~L~~~-~---------------------------------------~~~~ihg~~~~~~R~~~ 304 (547)
++||||++++.|+.+++.|... + .+..+|++|++.+|+.+
T Consensus 338 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp SEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHH
Confidence 9999999999999999998642 1 57899999999999999
Q ss_pred HHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCC---------ChhhhHhhhccccCCC--CceEEEEEe
Q 008956 305 LNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT---------GVEDYVHRIGRTGRAG--ATGVAYTFF 366 (547)
Q Consensus 305 l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~---------s~~~yiQriGR~gR~g--~~g~~~~l~ 366 (547)
++.|++|.++|||||+++++|||+|+ ..||+++.|. ++.+|+|++|||||.| ..|.+++++
T Consensus 418 ~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 418 EILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred HHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 99999999999999999999999999 5555555544 9999999999999998 567788777
No 39
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.7e-40 Score=354.74 Aligned_cols=328 Identities=15% Similarity=0.138 Sum_probs=243.2
Q ss_pred CCCCHHHHHHHHHC-C------CCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEE
Q 008956 23 TGFPPELLREVHNA-G------FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 95 (547)
Q Consensus 23 ~~l~~~l~~~l~~~-g------~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLi 95 (547)
.+++....+.+... . ..+|+|+|.++++.++++++++++++||+|||++++++++..+.. ...++||
T Consensus 89 ~~~~~~~f~~w~~~~~f~~~~~~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~------~~~~vlv 162 (510)
T 2oca_A 89 EELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN------YEGKILI 162 (510)
T ss_dssp CSCCHHHHHHHHHTCCEEETTEEECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH------CSSEEEE
T ss_pred CCCCHHHHHHHHhhcccccCCCCCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC------CCCeEEE
Confidence 34565555544431 2 348999999999999999999999999999999999988877654 1349999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc
Q 008956 96 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 175 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ 175 (547)
|+|+++|+.||++++.++.....+.+..+.++.....+ +...++|+|+||+.|.. .....+.++++|||||||+
T Consensus 163 l~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~ 236 (510)
T 2oca_A 163 IVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHL 236 (510)
T ss_dssp EESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGG
T ss_pred EECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcC
Confidence 99999999999999999876666778888887766554 44568999999997643 2335567899999999999
Q ss_pred cccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHH-HhcCCCeEEEeCcccc----cccccceeEEEEEc------
Q 008956 176 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAA-DLLVNPVQVNIGNVDE----LAANKAITQHIEVL------ 244 (547)
Q Consensus 176 ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~-~~l~~~~~i~i~~~~~----~~~~~~i~~~~~~~------ 244 (547)
+.. ..+..++..++...+++++|||++........ ..+..+..+.+...+. ......+.......
T Consensus 237 ~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 312 (510)
T 2oca_A 237 ATG----KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTT 312 (510)
T ss_dssp CCH----HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHH
T ss_pred CCc----ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhc
Confidence 864 56778888888888999999999766433211 1122333222221110 00000011111111
Q ss_pred ---------------CccchHHHHHHHHHhc--CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHH
Q 008956 245 ---------------APMDKHRRLEQILRSQ--EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLN 306 (547)
Q Consensus 245 ---------------~~~~k~~~l~~~l~~~--~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~ 306 (547)
....+...+.+++... ..+.++||||+ .++++.+++.|.+. ..+..+||++++.+|+.+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~ 391 (510)
T 2oca_A 313 KLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKT 391 (510)
T ss_dssp HHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHH
T ss_pred cccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHH
Confidence 1112223344444432 23456677777 88999999999875 68999999999999999999
Q ss_pred HhhcCCCcEEEEc-cccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEec
Q 008956 307 QFRAGRSPVLVAT-DVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFG 367 (547)
Q Consensus 307 ~F~~g~~~ILVaT-~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~ 367 (547)
.|++++.+||||| +++++|+|+|++++||+++.|+++.+|+|++||+||.|+.+.++++++
T Consensus 392 ~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 392 LAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999 999999999999999999999999999999999999998774555554
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.8e-39 Score=380.84 Aligned_cols=340 Identities=17% Similarity=0.244 Sum_probs=256.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHH
Q 008956 25 FPPELLREVHNAGFSSPTPIQAQSWPIALQ-SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELA 103 (547)
Q Consensus 25 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~-g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~ 103 (547)
|.+...+++...+|..++|+|.++++.++. +++++++||||||||++|.+|++..+... .+.++||++|+++|+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-----~~~kavyi~P~raLa 985 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-----SEGRCVYITPMEALA 985 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-----TTCCEEEECSCHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-----CCCEEEEEcChHHHH
Confidence 346778888888999999999999999986 46799999999999999999999988752 245899999999999
Q ss_pred HHHHHHHHH-hccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC--CcCCCCeeEEEEecccccccCC
Q 008956 104 TQIQDEAVK-FGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RISLNQVSYLVLDEADRMLDMG 180 (547)
Q Consensus 104 ~Q~~~~~~~-~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~--~~~l~~~~~lVlDEaH~ll~~g 180 (547)
.|+++++.+ +....++++..++|+...... ....++|+||||++|..++.+. ...+.++++||+||+|.+.+.
T Consensus 986 ~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~- 1061 (1724)
T 4f92_B 986 EQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE- 1061 (1724)
T ss_dssp HHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-
T ss_pred HHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-
Confidence 999999976 455578889888887543222 2235799999999997777543 233678999999999988764
Q ss_pred cHHHHHHHH-------HhCCCCceEEEEeccCcHHHHHHHHHhcCCCeE-EEeCcccccccccceeEEEEEcCccchH--
Q 008956 181 FEPQIRKIV-------KEVPARRQTLMYTATWPREVRKIAADLLVNPVQ-VNIGNVDELAANKAITQHIEVLAPMDKH-- 250 (547)
Q Consensus 181 ~~~~i~~i~-------~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~-i~i~~~~~~~~~~~i~~~~~~~~~~~k~-- 250 (547)
....+..++ ..+++..|+|++|||+++ ..+++..+-..... +.+... ..+..+..++.........
T Consensus 1062 rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~---~RPvpL~~~i~~~~~~~~~~~ 1137 (1724)
T 4f92_B 1062 NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN---VRPVPLELHIQGFNISHTQTR 1137 (1724)
T ss_dssp THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG---GCSSCEEEEEEEECCCSHHHH
T ss_pred CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC---CCCCCeEEEEEeccCCCchhh
Confidence 455444433 346778999999999974 44555444322222 222211 1222344444433332222
Q ss_pred -----HHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhc-----------------------------------ccceE
Q 008956 251 -----RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-----------------------------------QFGAA 290 (547)
Q Consensus 251 -----~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~-----------------------------------~~~~~ 290 (547)
..+...+.....+.++||||++++.|+.++..|.. ..+++
T Consensus 1138 ~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa 1217 (1724)
T 4f92_B 1138 LLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1217 (1724)
T ss_dssp HHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEE
T ss_pred hhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEE
Confidence 23444555667778999999999999988876632 13588
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE----cC------CCCChhhhHhhhccccCCCC--
Q 008956 291 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YD------FPTGVEDYVHRIGRTGRAGA-- 358 (547)
Q Consensus 291 ~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~----~d------~p~s~~~yiQriGR~gR~g~-- 358 (547)
.+|++|++.+|..+++.|++|.++|||||+++++|||+|..++||. || .|.++.+|+|++|||||.|.
T Consensus 1218 ~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~ 1297 (1724)
T 4f92_B 1218 YLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDD 1297 (1724)
T ss_dssp EECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCS
T ss_pred EECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCC
Confidence 9999999999999999999999999999999999999999999983 22 35689999999999999986
Q ss_pred ceEEEEEecCCChHHHHHH
Q 008956 359 TGVAYTFFGDQDSRYASDL 377 (547)
Q Consensus 359 ~g~~~~l~~~~~~~~~~~l 377 (547)
.|.|++++.+.+..+.+.+
T Consensus 1298 ~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1298 EGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp CEEEEEEEEGGGHHHHHHH
T ss_pred ceEEEEEecchHHHHHHHH
Confidence 6899999877666554443
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=7.6e-41 Score=365.55 Aligned_cols=315 Identities=18% Similarity=0.129 Sum_probs=231.9
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH
Q 008956 23 TGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 102 (547)
Q Consensus 23 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L 102 (547)
+++++.+++.+... +..++|+|+.+++.+++++++|+++|||||||++|++|++..+.. .++++|||+||++|
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~------~~~~vLvl~PtreL 227 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK------RRLRTLILAPTRVV 227 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH------TTCCEEEEESSHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh------CCCeEEEEcChHHH
Confidence 44566655555543 578899988899999999999999999999999999999988765 25689999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcH
Q 008956 103 ATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 182 (547)
Q Consensus 103 ~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~ 182 (547)
+.|+++.+..+ .+.. ...... .....+..+.++|.+.|...+... ..+.++++|||||||++ +++|.
T Consensus 228 a~Qi~~~l~~~------~v~~-~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~ 294 (618)
T 2whx_A 228 AAEMEEALRGL------PIRY-QTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSV 294 (618)
T ss_dssp HHHHHHHTTTS------CEEE-CCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHH
T ss_pred HHHHHHHhcCC------ceeE-ecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHH
Confidence 99999887632 2221 111100 011224568888988887655543 45789999999999998 67777
Q ss_pred HHHHHHHHhCC-CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcC
Q 008956 183 PQIRKIVKEVP-ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQE 261 (547)
Q Consensus 183 ~~i~~i~~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~ 261 (547)
..+..++..++ ...|+++||||++..+..++. .++..+.+.... +..+...+...+.+.
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~----------------~~~~~~~ll~~l~~~- 354 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI----------------PERSWNTGFDWITDY- 354 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC----------------CSSCCSSSCHHHHHC-
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC----------------CHHHHHHHHHHHHhC-
Confidence 78888877765 678999999999876432221 122222221110 001111122233332
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEE------
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVV------ 334 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~V------ 334 (547)
..++||||++++.++.+++.|++. +.+..+|++ +|+.+++.|++|+.+|||||+++++|||+| +++|
T Consensus 355 -~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 355 -QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp -CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred -CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 469999999999999999999865 789999984 688899999999999999999999999997 8888
Q ss_pred --------------EEcCCCCChhhhHhhhccccCCCC-ceEEEEEec---CCChHHHHHHHHHHHH
Q 008956 335 --------------VNYDFPTGVEDYVHRIGRTGRAGA-TGVAYTFFG---DQDSRYASDLIKLLEG 383 (547)
Q Consensus 335 --------------I~~d~p~s~~~yiQriGR~gR~g~-~g~~~~l~~---~~~~~~~~~l~~~l~~ 383 (547)
|+++.|.+.++|+||+||+||.|. +|.+++|++ +.+......+.+.+..
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l 495 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLL 495 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHH
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhcc
Confidence 777889999999999999999964 899999997 6777777776666544
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.6e-39 Score=384.55 Aligned_cols=332 Identities=21% Similarity=0.275 Sum_probs=248.3
Q ss_pred CCCCCcHHHHHHHHHHhC-CCcEEEEcCCCchHHHHHHHHHHHHhhhccCC----CCCCCEEEEEcCcHHHHHHHHHHHH
Q 008956 37 GFSSPTPIQAQSWPIALQ-SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND----PRLGPTVLVLSPTRELATQIQDEAV 111 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~-g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~----~~~~~~vLil~Ptr~L~~Q~~~~~~ 111 (547)
||.+|+++|.++++.++. ++|++++||||||||++|.++++..+...... ...+.++|||+|+++|+.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999999875 68999999999999999999999988753321 1236799999999999999999999
Q ss_pred HhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCC--cCCCCeeEEEEecccccccCCcHHHHHHHH
Q 008956 112 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR--ISLNQVSYLVLDEADRMLDMGFEPQIRKIV 189 (547)
Q Consensus 112 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~--~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~ 189 (547)
+.+...++++..++|+...... ....++|+|||||+|..++.+.. ..+.++.+|||||+|.+-+ .....+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9888889999999998765432 12458999999999966554432 2367899999999996654 4555555443
Q ss_pred -------HhCCCCceEEEEeccCcHHHHHHHHHhcCC-Ce--EEEeCcccccccccceeEEEEEcCccchH-------HH
Q 008956 190 -------KEVPARRQTLMYTATWPREVRKIAADLLVN-PV--QVNIGNVDELAANKAITQHIEVLAPMDKH-------RR 252 (547)
Q Consensus 190 -------~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~-~~--~i~i~~~~~~~~~~~i~~~~~~~~~~~k~-------~~ 252 (547)
..+++..|+|++|||+|+ ..+++. |+.. +. ...+... ..+..+.+++......... ..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~---~RPvpL~~~~~~~~~~~~~~~~~~~~~~ 306 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNS---FRPVPLEQTYVGITEKKAIKRFQIMNEI 306 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCGG---GCSSCEEEECCEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECCC---CccCccEEEEeccCCcchhhhhHHHHHH
Confidence 345678899999999984 444444 4432 11 1112111 1122234443333332221 22
Q ss_pred HHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc--------------------------------------cceEEEcC
Q 008956 253 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ--------------------------------------FGAAAIHG 294 (547)
Q Consensus 253 l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~--------------------------------------~~~~~ihg 294 (547)
+.+.+.+...+.++||||++++.|+.+++.|.+. .+++++|+
T Consensus 307 ~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHa 386 (1724)
T 4f92_B 307 VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHA 386 (1724)
T ss_dssp HHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECS
T ss_pred HHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcC
Confidence 3333444555679999999999999888877421 24789999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE----cCC------CCChhhhHhhhccccCCC--CceEE
Q 008956 295 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN----YDF------PTGVEDYVHRIGRTGRAG--ATGVA 362 (547)
Q Consensus 295 ~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~----~d~------p~s~~~yiQriGR~gR~g--~~g~~ 362 (547)
+|++.+|..+++.|++|.++|||||++++.|||+|..++||. |+. |.++.+|+||+|||||.| ..|.+
T Consensus 387 gL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ 466 (1724)
T 4f92_B 387 GMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEG 466 (1724)
T ss_dssp SSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEE
Confidence 999999999999999999999999999999999999999985 443 458999999999999987 46889
Q ss_pred EEEecCCChHHHHHH
Q 008956 363 YTFFGDQDSRYASDL 377 (547)
Q Consensus 363 ~~l~~~~~~~~~~~l 377 (547)
+++....+......+
T Consensus 467 ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 467 ILITSHGELQYYLSL 481 (1724)
T ss_dssp EEEEESTTCCHHHHH
T ss_pred EEEecchhHHHHHHH
Confidence 988877665544443
No 43
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=8.8e-40 Score=349.18 Aligned_cols=293 Identities=23% Similarity=0.263 Sum_probs=220.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
+|+|+|.++++.+++++++++++|||+|||++|+.++... +.++|||||+++|+.||.+++.++ ++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~ 158 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKERLGIF----GE 158 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----------CSCEEEEESSHHHHHHHHHHGGGG----CG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEECCHHHHHHHHHHHHhC----CC
Confidence 6899999999999999999999999999999999887654 358999999999999999999984 45
Q ss_pred E-EEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceE
Q 008956 120 S-CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 198 (547)
Q Consensus 120 ~-~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~ 198 (547)
. +..+.|+... .++|+|+||+.|...+.. ...++++|||||||++.+..|.. ++..++ ..++
T Consensus 159 ~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~~-~~~~ 221 (472)
T 2fwr_A 159 EYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFR 221 (472)
T ss_dssp GGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTCC-CSEE
T ss_pred cceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhcC-CCeE
Confidence 5 6666665532 478999999999776542 12458999999999999887653 444454 5789
Q ss_pred EEEeccCcHH-------------------HHHHHHHhcCCCeE--EEeCccccc-c---------------------ccc
Q 008956 199 LMYTATWPRE-------------------VRKIAADLLVNPVQ--VNIGNVDEL-A---------------------ANK 235 (547)
Q Consensus 199 l~~SAT~~~~-------------------~~~~~~~~l~~~~~--i~i~~~~~~-~---------------------~~~ 235 (547)
|++|||+.+. ..++...++..+.. +.+...... . ...
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999998731 22222222222211 111100000 0 000
Q ss_pred ceeEEE---------------------EEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcccceEEEcC
Q 008956 236 AITQHI---------------------EVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHG 294 (547)
Q Consensus 236 ~i~~~~---------------------~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg 294 (547)
.+.+.+ .......|...+.+++.. ..+.++||||++++.++.+++.|. +..+|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC----cceeeC
Confidence 000000 001233456677777777 456899999999999999999884 667999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCc-e--EEEEEecC
Q 008956 295 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGAT-G--VAYTFFGD 368 (547)
Q Consensus 295 ~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~-g--~~~~l~~~ 368 (547)
+++..+|+.+++.|++|+++|||||+++++|+|+|++++||+++.|+++..|+|++||++|.|+. + .+|.|++.
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999854 3 44555554
No 44
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.5e-38 Score=305.98 Aligned_cols=224 Identities=51% Similarity=0.939 Sum_probs=206.6
Q ss_pred EEEEecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhcc
Q 008956 5 LLIFQGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCR 84 (547)
Q Consensus 5 ~~~~~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~ 84 (547)
.|.+.|.+.|+|+.+|+++++++.+++.+..+||.+|+|+|.++|+.+++++++++++|||+|||++|++|++..+....
T Consensus 16 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~ 95 (242)
T 3fe2_A 16 EITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP 95 (242)
T ss_dssp TEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC
T ss_pred ceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999998876532
Q ss_pred C-CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCC
Q 008956 85 N-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLN 163 (547)
Q Consensus 85 ~-~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~ 163 (547)
. ....++++|||+||++|+.|+++.++++....++.+.+++|+.........+..+++|+|+||++|.+++......+.
T Consensus 96 ~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 175 (242)
T 3fe2_A 96 FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 175 (242)
T ss_dssp CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCT
T ss_pred ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcc
Confidence 1 112367899999999999999999999988888999999999998888888888999999999999999998888899
Q ss_pred CeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcc
Q 008956 164 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNV 228 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~ 228 (547)
++++|||||||++++++|...+..++..+++..|+++||||+++.+.+++..++.+|..+.+...
T Consensus 176 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp TCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred cccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999887653
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.1e-39 Score=342.21 Aligned_cols=286 Identities=17% Similarity=0.148 Sum_probs=211.1
Q ss_pred CCCCCcHHHHHHHHHHhCCCcE-EEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 37 GFSSPTPIQAQSWPIALQSRDI-VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~v-lv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
|+.+|+|+|+ +||.+++++++ |+++|||||||++|++|++..+.. .++++||++||++|+.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~------~~~~~lvl~Ptr~La~Q~~~~l~g--- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL------RRLRTLILAPTRVVAAEMEEALRG--- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh------cCCcEEEECCCHHHHHHHHHHhcC---
Confidence 6889999986 79999999887 888999999999999999876654 256899999999999999998752
Q ss_pred CCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHH-hCCC
Q 008956 116 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK-EVPA 194 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~-~l~~ 194 (547)
+.+......... ....+..|.++|++.|.+.+... ..+.++++|||||||++ +..+...+..+.. ..++
T Consensus 71 ---~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 71 ---LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp ---SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred ---ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 222211111100 11234679999999998776543 55789999999999976 4433333333322 2345
Q ss_pred CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChH
Q 008956 195 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKK 274 (547)
Q Consensus 195 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~ 274 (547)
..|+++||||++..+..+ +..++..+.+.... . .. ....+...+.+. ..++||||++++
T Consensus 141 ~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~--p-~~-------------~~~~~~~~l~~~--~~~~lVF~~s~~ 199 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDPF---PQSNSPIEDIEREI--P-ER-------------SWNTGFDWITDY--QGKTVWFVPSIK 199 (451)
T ss_dssp SCEEEEECSSCTTCCCSS---CCCSSCEEEEECCC--C-SS-------------CCSSSCHHHHHC--CSCEEEECSSHH
T ss_pred CceEEEEccCCCccchhh---hcCCCceEecCccC--C-ch-------------hhHHHHHHHHhC--CCCEEEEcCCHH
Confidence 789999999998644322 22233333221100 0 00 000112233332 459999999999
Q ss_pred HHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcC---------------
Q 008956 275 MCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYD--------------- 338 (547)
Q Consensus 275 ~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d--------------- 338 (547)
.++.+++.|++. +.+..+|+++. +.+++.|++|+.+|||||+++++|||+|+ ++||++|
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999865 78899999764 56899999999999999999999999999 9999999
Q ss_pred -----CCCChhhhHhhhccccCCCC-ceEEEEEecC
Q 008956 339 -----FPTGVEDYVHRIGRTGRAGA-TGVAYTFFGD 368 (547)
Q Consensus 339 -----~p~s~~~yiQriGR~gR~g~-~g~~~~l~~~ 368 (547)
.|.+..+|+||+||+||.|. +|.+++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8888888743
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.1e-40 Score=346.86 Aligned_cols=286 Identities=14% Similarity=0.166 Sum_probs=195.2
Q ss_pred HHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCC
Q 008956 51 IALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPK 130 (547)
Q Consensus 51 ~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~ 130 (547)
++++++++|+++|||||||++|++|++..+.. .++++||++||++|+.|+++.+..+. +. ...+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~------~~~~~lil~Ptr~La~Q~~~~l~~~~----v~--~~~~~~-- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR------RRLRTLVLAPTRVVLSEMKEAFHGLD----VK--FHTQAF-- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTTTSC----EE--EESSCC--
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh------cCCeEEEEcchHHHHHHHHHHHhcCC----eE--Eecccc--
Confidence 46789999999999999999999999987654 15689999999999999999887442 22 111110
Q ss_pred hhhHHHhhCCCcEEEECcHHHHHHH--------hcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhC-CCCceEEEE
Q 008956 131 GPQLKDIDRGVDIVVATPGRLNDIL--------EMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARRQTLMY 201 (547)
Q Consensus 131 ~~~~~~~~~~~~IlV~Tp~~L~~~l--------~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l-~~~~q~l~~ 201 (547)
-.|+||+++.+++ ......+.++++|||||||++ +..+...+..+...+ +...|+++|
T Consensus 70 ------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (440)
T 1yks_A 70 ------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILM 136 (440)
T ss_dssp ------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred ------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEE
Confidence 0245554433211 122345789999999999998 333333333333222 357899999
Q ss_pred eccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHH
Q 008956 202 TATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLAR 281 (547)
Q Consensus 202 SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~ 281 (547)
|||+++.+..+... ..+.. .....+....+.. +...+.+. +.++||||++++.++.+++
T Consensus 137 SAT~~~~~~~~~~~--~~~~~----------------~~~~~~~~~~~~~-~~~~l~~~--~~~~lVF~~s~~~a~~l~~ 195 (440)
T 1yks_A 137 TATPPGTSDEFPHS--NGEIE----------------DVQTDIPSEPWNT-GHDWILAD--KRPTAWFLPSIRAANVMAA 195 (440)
T ss_dssp CSSCTTCCCSSCCC--SSCEE----------------EEECCCCSSCCSS-SCHHHHHC--CSCEEEECSCHHHHHHHHH
T ss_pred eCCCCchhhhhhhc--CCCee----------------EeeeccChHHHHH-HHHHHHhc--CCCEEEEeCCHHHHHHHHH
Confidence 99998754322211 00110 0000111111111 12223222 5799999999999999999
Q ss_pred HHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE-------------------cCCCC
Q 008956 282 NLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN-------------------YDFPT 341 (547)
Q Consensus 282 ~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~-------------------~d~p~ 341 (547)
.|++. +.+..+|+ ++|+.+++.|++|+++|||||+++++|||+| +++||+ ++.|.
T Consensus 196 ~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~ 270 (440)
T 1yks_A 196 SLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRI 270 (440)
T ss_dssp HHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEEC
T ss_pred HHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccccc
Confidence 99865 78999999 4688899999999999999999999999999 999986 88999
Q ss_pred ChhhhHhhhccccCC-CCceEEEEEe---cCCChHHHHHHHHHHHHhccccc
Q 008956 342 GVEDYVHRIGRTGRA-GATGVAYTFF---GDQDSRYASDLIKLLEGAKQQVP 389 (547)
Q Consensus 342 s~~~yiQriGR~gR~-g~~g~~~~l~---~~~~~~~~~~l~~~l~~~~~~v~ 389 (547)
+.++|+||+||+||. +++|.|++|+ ++.+......+...+......++
T Consensus 271 ~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~ 322 (440)
T 1yks_A 271 SASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVR 322 (440)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCG
T ss_pred CHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccc
Confidence 999999999999998 6899999997 56677777777666655444443
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=9.7e-39 Score=351.09 Aligned_cols=304 Identities=18% Similarity=0.177 Sum_probs=214.5
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHh------CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEE
Q 008956 32 EVHNAGFS-----SPTPIQA-----QSWPIAL------QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 95 (547)
Q Consensus 32 ~l~~~g~~-----~~~~~Q~-----~~i~~il------~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLi 95 (547)
.|..+||. .|+++|+ ++|+.++ +++++|+++|||||||++|++|++..+.. .++++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~------~~~~~li 275 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ------KRLRTAV 275 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH------TTCCEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCcEEE
Confidence 45566777 9999999 9999988 89999999999999999999999987654 2568999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHh-hCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccc
Q 008956 96 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI-DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 174 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH 174 (547)
|+||++|+.|+++.+..+. +. ...+. +... ..+.-+.+.+.+.+...+.. ...+.++++|||||||
T Consensus 276 laPTr~La~Q~~~~l~~~~----i~--~~~~~------l~~v~tp~~ll~~l~~~~l~~~l~~-~~~l~~l~lvViDEaH 342 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGLP----VR--YLTPA------VQREHSGNEIVDVMCHATLTHRLMS-PLRVPNYNLFVMDEAH 342 (673)
T ss_dssp EESSHHHHHHHHHHTTTSC----CE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHS-SSCCCCCSEEEEESTT
T ss_pred EccHHHHHHHHHHHHhcCC----ee--eeccc------ccccCCHHHHHHHHHhhhhHHHHhc-ccccccceEEEEeCCc
Confidence 9999999999999887552 21 11110 0001 11233455565665544443 3568899999999999
Q ss_pred ccccCCcHHHHHHHHHhCC-CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHH
Q 008956 175 RMLDMGFEPQIRKIVKEVP-ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRL 253 (547)
Q Consensus 175 ~ll~~g~~~~i~~i~~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 253 (547)
++ +..+...+..+...++ ...|+|+||||++..+..+... ......+ ........+.. +
T Consensus 343 ~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v---------------~~~~~~~~~~~-~ 402 (673)
T 2wv9_A 343 FT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDV---------------SSEIPDRAWSS-G 402 (673)
T ss_dssp CC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEE---------------ECCCCSSCCSS-C
T ss_pred cc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEE---------------eeecCHHHHHH-H
Confidence 97 2222233333333332 5789999999998653321110 0000100 00011111111 2
Q ss_pred HHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCcc
Q 008956 254 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR 332 (547)
Q Consensus 254 ~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~ 332 (547)
...+.+ .+.++||||++++.++.+++.|++. +.+..+|++ +|+.+++.|++|+++|||||+++++|||+| ++
T Consensus 403 l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~ 475 (673)
T 2wv9_A 403 FEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-AS 475 (673)
T ss_dssp CHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CS
T ss_pred HHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-Cc
Confidence 222322 3579999999999999999999865 889999993 788999999999999999999999999999 99
Q ss_pred EEEE--------------------cCCCCChhhhHhhhccccCC-CCceEEEEEe---cCCChHHHHHHHHHH
Q 008956 333 VVVN--------------------YDFPTGVEDYVHRIGRTGRA-GATGVAYTFF---GDQDSRYASDLIKLL 381 (547)
Q Consensus 333 ~VI~--------------------~d~p~s~~~yiQriGR~gR~-g~~g~~~~l~---~~~~~~~~~~l~~~l 381 (547)
+||+ |++|.++++|+||+||+||. +++|.|++|+ ++.+......+...+
T Consensus 476 ~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 476 RVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred EEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 9998 67899999999999999999 7899999996 456655555554443
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=9.1e-38 Score=349.42 Aligned_cols=332 Identities=17% Similarity=0.228 Sum_probs=242.2
Q ss_pred CCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEE
Q 008956 15 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTV 93 (547)
Q Consensus 15 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~v 93 (547)
.++.+|+++++++.+.+.+...+ ..|++.|+++|+.++.+ +++++++|||+|||+ ++|++........ ..+..+
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~--~~g~~i 143 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPH--LENTQV 143 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGG--GGTCEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcccc--CCCceE
Confidence 35778999999999999999887 78999999999888765 679999999999998 5565533221111 114579
Q ss_pred EEEcCcHHHHHHHHHHHHHhcc-CCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEec
Q 008956 94 LVLSPTRELATQIQDEAVKFGK-SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDE 172 (547)
Q Consensus 94 Lil~Ptr~L~~Q~~~~~~~~~~-~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 172 (547)
+|++|+++|+.|+++.+.+... ..+..+....... .......+|+|+||++|.+.+... ..+.++++|||||
T Consensus 144 lvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~------~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDE 216 (773)
T 2xau_A 144 ACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE------NKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDE 216 (773)
T ss_dssp EEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE------EECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECS
T ss_pred EecCchHHHHHHHHHHHHHHhCCchhheecceeccc------cccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecC
Confidence 9999999999999987765542 1111111110000 011235789999999999877653 4588999999999
Q ss_pred ccc-cccCCc-HHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchH
Q 008956 173 ADR-MLDMGF-EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKH 250 (547)
Q Consensus 173 aH~-ll~~g~-~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~ 250 (547)
+|. +++..+ ...+..+.... +..|+++||||++.+ .+..++.+...+.+.... ..+.+++......++.
T Consensus 217 ah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~-----~pv~~~~~~~~~~~~~ 287 (773)
T 2xau_A 217 AHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT-----YPVELYYTPEFQRDYL 287 (773)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC-----CCEEEECCSSCCSCHH
T ss_pred ccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH---HHHHHhcCCCcccccCcc-----cceEEEEecCCchhHH
Confidence 995 665432 23344444444 478999999999643 234455544444443221 1233333222233333
Q ss_pred HH----HHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhc------------ccceEEEcCCCCHHHHHHHHHHhh-----
Q 008956 251 RR----LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR------------QFGAAAIHGDKSQSERDYVLNQFR----- 309 (547)
Q Consensus 251 ~~----l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~------------~~~~~~ihg~~~~~~R~~~l~~F~----- 309 (547)
.. +..++.. ....++||||+++++++.+++.|.+ .+.+..+|+++++.+|..+++.|+
T Consensus 288 ~~~l~~l~~~~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~ 366 (773)
T 2xau_A 288 DSAIRTVLQIHAT-EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366 (773)
T ss_dssp HHHHHHHHHHHHH-SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSS
T ss_pred HHHHHHHHHHHHh-cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCC
Confidence 22 2222222 3457999999999999999999974 366899999999999999999999
Q ss_pred cCCCcEEEEccccccCCCCCCccEEEEcCC------------------CCChhhhHhhhccccCCCCceEEEEEecCC
Q 008956 310 AGRSPVLVATDVAARGLDIKDIRVVVNYDF------------------PTGVEDYVHRIGRTGRAGATGVAYTFFGDQ 369 (547)
Q Consensus 310 ~g~~~ILVaT~~~~~GiDip~v~~VI~~d~------------------p~s~~~yiQriGR~gR~g~~g~~~~l~~~~ 369 (547)
+|..+|||||+++++|||||++++||++++ |.+..+|+||+|||||. .+|.|+.|+++.
T Consensus 367 ~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp SCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred CCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999999999999999888 88999999999999999 889999999754
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.1e-38 Score=345.66 Aligned_cols=279 Identities=23% Similarity=0.253 Sum_probs=211.7
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 118 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~ 118 (547)
..++++|+++++.+..+++++++||||||||++|+++++.. +.++||++|||+|+.|+++.+.+...
T Consensus 216 lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----------g~~vLVl~PTReLA~Qia~~l~~~~g--- 282 (666)
T 3o8b_A 216 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----------GYKVLVLNPSVAATLGFGAYMSKAHG--- 282 (666)
T ss_dssp SCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----------TCCEEEEESCHHHHHHHHHHHHHHHS---
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----------CCeEEEEcchHHHHHHHHHHHHHHhC---
Confidence 35566777777777788999999999999999999887652 45899999999999999998876653
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCce-
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ- 197 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q- 197 (547)
..+...+++.. +..+++|+|+||++| +....+.+.++++||||||| +++++|...+..+++.++..++
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCc
Confidence 23344455432 345689999999998 45667778899999999996 6777888889999999987776
Q ss_pred -EEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHH
Q 008956 198 -TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMC 276 (547)
Q Consensus 198 -~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~ 276 (547)
++++|||++..+. ...+....+... .... +........ + ......++||||++++.+
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~----~~~~----i~~~~~~~~-------l-~~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALS----NTGE----IPFYGKAIP-------I-EAIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECB----SCSS----EEETTEEEC-------G-GGSSSSEEEEECSCHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEeec----ccch----hHHHHhhhh-------h-hhccCCcEEEEeCCHHHH
Confidence 7778999987321 111111111000 0000 111111100 1 122467999999999999
Q ss_pred HHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEE----------EcC-------
Q 008956 277 DQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV----------NYD------- 338 (547)
Q Consensus 277 ~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI----------~~d------- 338 (547)
+.+++.|++. +.+..+|+++++.+ |+++..+|||||+++++|||+| +++|| |||
T Consensus 410 e~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 410 DELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 9999999865 88999999999875 5567779999999999999997 99988 677
Q ss_pred ----CCCChhhhHhhhccccCCCCceEEEEEecCCChHH
Q 008956 339 ----FPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRY 373 (547)
Q Consensus 339 ----~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~ 373 (547)
.|.+.++|+||+||+|| +++|. ++|+++.+...
T Consensus 482 ~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 482 ETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 89999 99998766544
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5.4e-37 Score=336.55 Aligned_cols=314 Identities=18% Similarity=0.234 Sum_probs=194.7
Q ss_pred CCcHHHHHHHHHHhC----C-CcEEEEcCCCchHHHHHHHHHHHHhhhccC--CCCCCCEEEEEcCcHHHHHHHH-HHHH
Q 008956 40 SPTPIQAQSWPIALQ----S-RDIVAIAKTGSGKTLGYLLPGFIHLKRCRN--DPRLGPTVLVLSPTRELATQIQ-DEAV 111 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~----g-~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~--~~~~~~~vLil~Ptr~L~~Q~~-~~~~ 111 (547)
.|+|+|.++++.+++ + ++++++++||+|||++++..+...+..... .....+++|||+|+++|+.|+. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 799999999999886 4 668999999999999976655554443211 1113579999999999999999 7777
Q ss_pred HhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHh----cCCcCCCCeeEEEEecccccccCCcHHHHHH
Q 008956 112 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE----MRRISLNQVSYLVLDEADRMLDMGFEPQIRK 187 (547)
Q Consensus 112 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~----~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~ 187 (547)
.+... +..+.++ ......+|+|+||++|...+. ...+....+++|||||||++.... ...+..
T Consensus 258 ~~~~~----~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFGDA----RHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTCSS----EEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcchh----hhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 66532 2223222 123457999999999988764 234456779999999999987642 355677
Q ss_pred HHHhCCCCceEEEEeccCcHHHHHHHHHhcCCC-----------------eEE-EeCcccccc---cc--------ccee
Q 008956 188 IVKEVPARRQTLMYTATWPREVRKIAADLLVNP-----------------VQV-NIGNVDELA---AN--------KAIT 238 (547)
Q Consensus 188 i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~-----------------~~i-~i~~~~~~~---~~--------~~i~ 238 (547)
++..++ ..++|+||||+..........++..+ ..+ .+....... .. ..+.
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 777776 46799999998744332222222221 111 110000000 00 0000
Q ss_pred EEEEEcCcc-------chH----HHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcccc---------eEEEcCCCCH
Q 008956 239 QHIEVLAPM-------DKH----RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFG---------AAAIHGDKSQ 298 (547)
Q Consensus 239 ~~~~~~~~~-------~k~----~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~---------~~~ihg~~~~ 298 (547)
......... .+. ..+.+.+.......++||||+++.+|+.+++.|.+... +..+||++++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 000000000 011 12333444445668999999999999999999976422 6788998764
Q ss_pred HHHHHHHHHhhcCCCc---EEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCC--ceEEEEEecC
Q 008956 299 SERDYVLNQFRAGRSP---VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGA--TGVAYTFFGD 368 (547)
Q Consensus 299 ~~R~~~l~~F~~g~~~---ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~--~g~~~~l~~~ 368 (547)
+|+.+++.|++++.+ |||||+++++|||+|++++||+++.|+++..|+|++||++|.+. .+..+++++.
T Consensus 484 -~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 484 -IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp -HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred -HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 799999999998766 89999999999999999999999999999999999999999875 3344444443
No 51
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=291.82 Aligned_cols=223 Identities=47% Similarity=0.811 Sum_probs=191.0
Q ss_pred CceEEEE-EecCCCCCCccCCcc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHH
Q 008956 1 MTFLLLI-FQGDEVPPPFMSFDA-TGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 78 (547)
Q Consensus 1 ~~~~~~~-~~g~~~p~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~ 78 (547)
|++..+. -....+|+|..+|++ +++++.+++.+.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++.
T Consensus 1 ~~~~~~~~~~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~ 80 (228)
T 3iuy_A 1 MTCDDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFI 80 (228)
T ss_dssp CEEEECCSSSCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcccccCCccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHH
Confidence 4444432 234577899999999 79999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhccC--CCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHh
Q 008956 79 HLKRCRN--DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE 156 (547)
Q Consensus 79 ~l~~~~~--~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~ 156 (547)
.+..... ....++++||++||++|+.|+++++.++. ..++.+.+++++.........+..+++|+|+||++|.+++.
T Consensus 81 ~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~ 159 (228)
T 3iuy_A 81 HLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQM 159 (228)
T ss_dssp HHC---------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHH
T ss_pred HHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 7754211 11236789999999999999999999986 45688889999988888888888899999999999999998
Q ss_pred cCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEE
Q 008956 157 MRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVN 224 (547)
Q Consensus 157 ~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~ 224 (547)
...+.+.++++|||||||++++++|...+..++..+++..|++++|||+|+.+.+++..++.+|..+.
T Consensus 160 ~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 160 NNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp TTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred cCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 88888999999999999999999999999999999999999999999999999999999999988764
No 52
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-36 Score=296.40 Aligned_cols=224 Identities=44% Similarity=0.732 Sum_probs=199.6
Q ss_pred EEEecCCCCC--CccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhc
Q 008956 6 LIFQGDEVPP--PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRC 83 (547)
Q Consensus 6 ~~~~g~~~p~--~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~ 83 (547)
+.++|.+.|+ ++.+|+++++++.+++.|..+||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~ 88 (253)
T 1wrb_A 9 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88 (253)
T ss_dssp CCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhh
Confidence 4567888887 88999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred cCC-----CCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC
Q 008956 84 RND-----PRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR 158 (547)
Q Consensus 84 ~~~-----~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~ 158 (547)
... ...++++|||+||++|+.|+++++.++....++.+..++|+.........+..+++|+|+||++|.+++...
T Consensus 89 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 89 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp CC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 211 123468999999999999999999999888888999999999888888888888999999999999999988
Q ss_pred CcCCCCeeEEEEecccccccCCcHHHHHHHHHh--CCC--CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCccc
Q 008956 159 RISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE--VPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVD 229 (547)
Q Consensus 159 ~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~--l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~ 229 (547)
.+.+.++++|||||||++++++|...+..++.. ++. ..|+++||||+++++.+++..++.+|..+.+....
T Consensus 169 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 169 KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 888899999999999999999999999999985 444 67999999999999999999999999988876543
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=7.5e-37 Score=324.53 Aligned_cols=272 Identities=18% Similarity=0.199 Sum_probs=193.2
Q ss_pred HHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCC
Q 008956 49 WPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGA 128 (547)
Q Consensus 49 i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~ 128 (547)
...+.+++++|+++|||||||++|++|++..+.. .++++||++||++|+.|+++.+.. +.+.......
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~ 82 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ------QRLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAV 82 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH------TTCCEEEEECSHHHHHHHHHHTTT------SCEEECC---
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEECchHHHHHHHHHHhcC------ceEeEEeccc
Confidence 3456678899999999999999999999987754 256899999999999999998862 2222111111
Q ss_pred CChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc-----cccCCcHHHHHHHHHhCCCCceEEEEec
Q 008956 129 PKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR-----MLDMGFEPQIRKIVKEVPARRQTLMYTA 203 (547)
Q Consensus 129 ~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~-----ll~~g~~~~i~~i~~~l~~~~q~l~~SA 203 (547)
. .....+..+.++|.+.+...+... ..+.++++|||||||+ ++.+++...+. .++..|+++|||
T Consensus 83 ~-----~~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SA 151 (459)
T 2z83_A 83 Q-----REHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTA 151 (459)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECS
T ss_pred c-----cCCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEc
Confidence 0 001233567888988887655543 5578999999999998 44333322211 235789999999
Q ss_pred cCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHH
Q 008956 204 TWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNL 283 (547)
Q Consensus 204 T~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L 283 (547)
|++..+..+... ..|... +.. ..+..+...+...+.+. ..++||||++++.++.+++.|
T Consensus 152 T~~~~~~~~~~~--~~pi~~-~~~----------------~~~~~~~~~~~~~l~~~--~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 152 TPPGTTDPFPDS--NAPIHD-LQD----------------EIPDRAWSSGYEWITEY--AGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp SCTTCCCSSCCC--SSCEEE-EEC----------------CCCSSCCSSCCHHHHHC--CSCEEEECSCHHHHHHHHHHH
T ss_pred CCCcchhhhccC--CCCeEE-ecc----------------cCCcchhHHHHHHHHhc--CCCEEEEeCChHHHHHHHHHH
Confidence 998654222111 112111 100 00011111112233333 469999999999999999999
Q ss_pred hcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEE--------------------cCCCCC
Q 008956 284 TRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN--------------------YDFPTG 342 (547)
Q Consensus 284 ~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~--------------------~d~p~s 342 (547)
++. +.+..+|++ +|+.+++.|++|+.+|||||+++++|||+|+ ++||+ |+.|.+
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 865 889999985 6778899999999999999999999999999 99999 779999
Q ss_pred hhhhHhhhccccCCCC-ceEEEEEecCC
Q 008956 343 VEDYVHRIGRTGRAGA-TGVAYTFFGDQ 369 (547)
Q Consensus 343 ~~~yiQriGR~gR~g~-~g~~~~l~~~~ 369 (547)
+.+|+||+||+||.|. +|.+++|+...
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999997 89999999875
No 54
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.7e-35 Score=286.78 Aligned_cols=213 Identities=30% Similarity=0.483 Sum_probs=179.7
Q ss_pred ecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCC
Q 008956 9 QGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPR 88 (547)
Q Consensus 9 ~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~ 88 (547)
...+.|++..+|++++|++.+++.|...||..|+++|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 21 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~----~ 96 (237)
T 3bor_A 21 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE----F 96 (237)
T ss_dssp ------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT----S
T ss_pred ccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc----C
Confidence 345677888999999999999999999999999999999999999999999999999999999999999886532 1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCC-CcEEEECcHHHHHHHhcCCcCCCCeeE
Q 008956 89 LGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRG-VDIVVATPGRLNDILEMRRISLNQVSY 167 (547)
Q Consensus 89 ~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 167 (547)
.++++||++||++|+.|+++.+.++....++.+..++++.........+..+ ++|+|+||++|.+++....+.+.++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 2568999999999999999999999888788888899988877777766665 899999999999999888888899999
Q ss_pred EEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEe
Q 008956 168 LVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNI 225 (547)
Q Consensus 168 lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i 225 (547)
|||||||++++++|...+..++..++...|++++|||+++++.+++..++.+|..+.+
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999999887754
No 55
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.3e-36 Score=316.16 Aligned_cols=268 Identities=15% Similarity=0.140 Sum_probs=188.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ 133 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~ 133 (547)
+++++|+++|||||||++|++|++..+.. .++++||++||++|+.|+++.+. ++.+....+....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~--- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS--- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc---
Confidence 36899999999999999999998865543 25699999999999999998775 2334333332111
Q ss_pred HHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhC-CCCceEEEEeccCcHHHHHH
Q 008956 134 LKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV-PARRQTLMYTATWPREVRKI 212 (547)
Q Consensus 134 ~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l-~~~~q~l~~SAT~~~~~~~~ 212 (547)
....+..+.++|.+.+...+.. ...+.++++|||||||++ +..+......+.... +...|+|+||||+++.+..+
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS
T ss_pred --cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh
Confidence 1112456778898888766555 566889999999999997 433334444443332 56789999999998643211
Q ss_pred HHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEE
Q 008956 213 AADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAA 291 (547)
Q Consensus 213 ~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ 291 (547)
... .+..+. +....+..+...+...+.+. ..++||||+++++++.+++.|++. +.+..
T Consensus 142 ~~~---~~~i~~----------------~~~~~~~~~~~~~~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 142 PPS---NSPIID----------------EETRIPDKAWNSGYEWITEF--DGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CCC---SSCCEE----------------EECCCCSSCCSSCCHHHHSC--SSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCC---CCceee----------------ccccCCHHHHHHHHHHHHcC--CCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 100 000010 00000111112223344443 468999999999999999999864 78999
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccE-----------------EEEcCCCCChhhhHhhhcccc
Q 008956 292 IHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRV-----------------VVNYDFPTGVEDYVHRIGRTG 354 (547)
Q Consensus 292 ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~-----------------VI~~d~p~s~~~yiQriGR~g 354 (547)
+|++ +|+.+++.|++|+++|||||+++++|||+| +.+ ||+++.|.+..+|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 577899999999999999999999999999 544 678899999999999999999
Q ss_pred CCCC-ceEEEEEe
Q 008956 355 RAGA-TGVAYTFF 366 (547)
Q Consensus 355 R~g~-~g~~~~l~ 366 (547)
|.|. .+.++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985 44555554
No 56
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=8.1e-35 Score=312.99 Aligned_cols=322 Identities=19% Similarity=0.216 Sum_probs=219.2
Q ss_pred CCCcHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 39 SSPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il----~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
..|+|||.+++++++ .++++|++++||+|||++++..+...... ....++|||||+ +|+.||.+++.++.
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKFA 109 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHHC
Confidence 479999999998874 57899999999999999876554443322 113589999995 69999999999998
Q ss_pred cCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCC
Q 008956 115 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 194 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~ 194 (547)
.. +.+..+.++... .....++|+|+||+.|..... +....+++||+||||++.+.. ......+..++
T Consensus 110 ~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~- 176 (500)
T 1z63_A 110 PH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK- 176 (500)
T ss_dssp TT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-
T ss_pred CC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-
Confidence 64 445555555422 112347999999999875433 334578999999999998764 23444555564
Q ss_pred CceEEEEeccCcHH-HHH---H---------------------------------HHHhcCCCeEEEeCcccc---cccc
Q 008956 195 RRQTLMYTATWPRE-VRK---I---------------------------------AADLLVNPVQVNIGNVDE---LAAN 234 (547)
Q Consensus 195 ~~q~l~~SAT~~~~-~~~---~---------------------------------~~~~l~~~~~i~i~~~~~---~~~~ 234 (547)
..+.+++||||..+ ..+ + +..++ .+..+.....+. ....
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSC
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCC
Confidence 46789999998432 111 1 11111 122221111110 0001
Q ss_pred cceeEEEEE--------------------------------------------------------cCccchHHHHHHHHH
Q 008956 235 KAITQHIEV--------------------------------------------------------LAPMDKHRRLEQILR 258 (547)
Q Consensus 235 ~~i~~~~~~--------------------------------------------------------~~~~~k~~~l~~~l~ 258 (547)
......+.. .....|...+.+++.
T Consensus 256 ~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~ 335 (500)
T 1z63_A 256 DKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIE 335 (500)
T ss_dssp SEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHH
Confidence 111111111 011234444455555
Q ss_pred hc-CCCCeEEEEcCChHHHHHHHHHHhc--ccceEEEcCCCCHHHHHHHHHHhhcC-CCc-EEEEccccccCCCCCCccE
Q 008956 259 SQ-EPGSKIIVFCSTKKMCDQLARNLTR--QFGAAAIHGDKSQSERDYVLNQFRAG-RSP-VLVATDVAARGLDIKDIRV 333 (547)
Q Consensus 259 ~~-~~~~k~IVF~~s~~~~~~l~~~L~~--~~~~~~ihg~~~~~~R~~~l~~F~~g-~~~-ILVaT~~~~~GiDip~v~~ 333 (547)
+. ..+.++||||+++..++.+++.|.+ .+.+..+||++++.+|+.+++.|+++ .++ |||+|+++++|+|+|.+++
T Consensus 336 ~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 336 EALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp HHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred HHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 43 4678999999999999999999986 47889999999999999999999988 555 7999999999999999999
Q ss_pred EEEcCCCCChhhhHhhhccccCCCCceEE--EEEecCCChHHHHHHHHHHH
Q 008956 334 VVNYDFPTGVEDYVHRIGRTGRAGATGVA--YTFFGDQDSRYASDLIKLLE 382 (547)
Q Consensus 334 VI~~d~p~s~~~yiQriGR~gR~g~~g~~--~~l~~~~~~~~~~~l~~~l~ 382 (547)
||++|+||++..|+|++||++|.|+...+ +.|+... ...+.+.+.++
T Consensus 416 vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~--tiee~i~~~~~ 464 (500)
T 1z63_A 416 VIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG--TLEEKIDQLLA 464 (500)
T ss_dssp EEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT--SHHHHTHHHHT
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC--CHHHHHHHHHH
Confidence 99999999999999999999999987755 4444443 33444444443
No 57
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.3e-35 Score=282.63 Aligned_cols=213 Identities=28% Similarity=0.513 Sum_probs=182.9
Q ss_pred EecCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCC
Q 008956 8 FQGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDP 87 (547)
Q Consensus 8 ~~g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~ 87 (547)
.+++..|++..+|+++++++.+++.+..+||..|+++|.++++.+++++++++++|||+|||++|++|++..+....
T Consensus 14 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--- 90 (230)
T 2oxc_A 14 RTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN--- 90 (230)
T ss_dssp ----------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS---
T ss_pred ccCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC---
Confidence 45677788889999999999999999999999999999999999999999999999999999999999988765421
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHhccCC-ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCee
Q 008956 88 RLGPTVLVLSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVS 166 (547)
Q Consensus 88 ~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 166 (547)
.++++||++||++|+.|+++++.++.... ++.+..++|+.........+ .+++|+|+||++|.+++....+.+.+++
T Consensus 91 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~ 168 (230)
T 2oxc_A 91 -LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIR 168 (230)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCC
T ss_pred -CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCC
Confidence 25689999999999999999999997654 78888888887766555544 4789999999999999988788888999
Q ss_pred EEEEecccccccCC-cHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEe
Q 008956 167 YLVLDEADRMLDMG-FEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNI 225 (547)
Q Consensus 167 ~lVlDEaH~ll~~g-~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i 225 (547)
+|||||||++++++ |...+..++..++...|++++|||++.++.+++..++.+|..+.+
T Consensus 169 ~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 169 LFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999997 999999999999999999999999999999999999988887654
No 58
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=9.4e-36 Score=341.57 Aligned_cols=332 Identities=19% Similarity=0.136 Sum_probs=225.5
Q ss_pred CCCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 39 SSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
.+|+|||.+++..++.. .++|++++||+|||++++..+...+.... ..++|||||+ .|+.||..++.+++.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-----~~rvLIVvP~-sLl~Qw~~E~~~~f~- 224 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-----AERVLIIVPE-TLQHQWLVEMLRRFN- 224 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-----CCCEEEECCT-TTHHHHHHHHHHHSC-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-----CCeEEEEeCH-HHHHHHHHHHHHHhC-
Confidence 47999999999998874 47899999999999998887766655421 3489999999 999999999977663
Q ss_pred CceEEEEecCCCCChhhHH---HhhCCCcEEEECcHHHHHHHhc-CCcCCCCeeEEEEecccccccCCcH--HHHHHHHH
Q 008956 117 SRISCTCLYGGAPKGPQLK---DIDRGVDIVVATPGRLNDILEM-RRISLNQVSYLVLDEADRMLDMGFE--PQIRKIVK 190 (547)
Q Consensus 117 ~~i~~~~~~g~~~~~~~~~---~~~~~~~IlV~Tp~~L~~~l~~-~~~~l~~~~~lVlDEaH~ll~~g~~--~~i~~i~~ 190 (547)
+.+..+.+... ..... ......+|+|+|++.|...... ..+...++++|||||||++.+.... .....+..
T Consensus 225 --l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~ 301 (968)
T 3dmq_A 225 --LRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQ 301 (968)
T ss_dssp --CCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHH
T ss_pred --CCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHH
Confidence 33333332221 11111 1112479999999988542111 1233457899999999999765421 11222222
Q ss_pred hCCCCceEEEEeccCcH----HHHHH----------------------------HHHhcCCC------------------
Q 008956 191 EVPARRQTLMYTATWPR----EVRKI----------------------------AADLLVNP------------------ 220 (547)
Q Consensus 191 ~l~~~~q~l~~SAT~~~----~~~~~----------------------------~~~~l~~~------------------ 220 (547)
......+++++||||.. ++..+ +..++...
T Consensus 302 L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 302 LAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp HHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred HhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 22345679999999742 01111 11110000
Q ss_pred ----------------------------------eEEEeCcccccccccceeEEE-------------------------
Q 008956 221 ----------------------------------VQVNIGNVDELAANKAITQHI------------------------- 241 (547)
Q Consensus 221 ----------------------------------~~i~i~~~~~~~~~~~i~~~~------------------------- 241 (547)
..+.................+
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 000000000000000000000
Q ss_pred ---------------------EEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhc--ccceEEEcCCCCH
Q 008956 242 ---------------------EVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR--QFGAAAIHGDKSQ 298 (547)
Q Consensus 242 ---------------------~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~--~~~~~~ihg~~~~ 298 (547)
.......|...+..++.. ..+.++||||+++..++.+++.|.+ .+.+..+||++++
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~ 540 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI 540 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCT
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 112234567778888876 4567999999999999999999984 5889999999999
Q ss_pred HHHHHHHHHhhcCC--CcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHH
Q 008956 299 SERDYVLNQFRAGR--SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASD 376 (547)
Q Consensus 299 ~~R~~~l~~F~~g~--~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~ 376 (547)
.+|+.+++.|++++ ++|||||+++++|||+|++++||+||+|+++..|+|++||++|.|+.+.+++++...+....+.
T Consensus 541 ~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~ 620 (968)
T 3dmq_A 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSV 620 (968)
T ss_dssp THHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHH
T ss_pred HHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHH
Confidence 99999999999998 9999999999999999999999999999999999999999999999887666654333333344
Q ss_pred HHHHH
Q 008956 377 LIKLL 381 (547)
Q Consensus 377 l~~~l 381 (547)
+.+.+
T Consensus 621 i~~~~ 625 (968)
T 3dmq_A 621 LVRWY 625 (968)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 59
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=280.47 Aligned_cols=212 Identities=35% Similarity=0.525 Sum_probs=187.8
Q ss_pred CCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEE
Q 008956 14 PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTV 93 (547)
Q Consensus 14 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~v 93 (547)
+++..+|+++++++.+++.|...||..|+++|.++++.+++++++++++|||+|||++|++|++..+.........++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 45678899999999999999999999999999999999999999999999999999999999998876533222236789
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC-CcCCCCeeEEEEec
Q 008956 94 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDE 172 (547)
Q Consensus 94 Lil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlDE 172 (547)
||++||++|+.|+++.+.++....++.+..++|+.........+ .+++|+|+||++|.+.+... .+.+.++++|||||
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999988888899999988877666555 57899999999999888754 46678999999999
Q ss_pred ccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeC
Q 008956 173 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 226 (547)
Q Consensus 173 aH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~ 226 (547)
||++++++|...+..++..++..+|+++||||+++.+.++++.++.+|..+.+.
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999887654
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-34 Score=273.21 Aligned_cols=202 Identities=34% Similarity=0.565 Sum_probs=184.9
Q ss_pred cCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 18 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
.+|++++|++++++.|..+||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+.... .++++||++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----~~~~~lil~ 78 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK----DNIQAMVIV 78 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS----CSCCEEEEC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC----CCeeEEEEe
Confidence 4799999999999999999999999999999999999999999999999999999999988765421 246899999
Q ss_pred CcHHHHHHHHHHHHHhccCC-ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccc
Q 008956 98 PTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 176 (547)
Q Consensus 98 Ptr~L~~Q~~~~~~~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~l 176 (547)
||++|+.|+++.+.++.... .+.+..++|+.........+..+++|+|+||++|.+.+......+.++++|||||||++
T Consensus 79 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 79 PTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp SCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHh
Confidence 99999999999999998765 68888899988877777777788999999999999999888888899999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEE
Q 008956 177 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQV 223 (547)
Q Consensus 177 l~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i 223 (547)
.+++|...+..++..+++..|++++|||++..+.+++..++.+|..+
T Consensus 159 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 159 LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999999999999999999999999888765
No 61
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=7.6e-35 Score=284.30 Aligned_cols=206 Identities=38% Similarity=0.595 Sum_probs=189.1
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEE
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 95 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLi 95 (547)
+..+|+++++++.+++.|..+||..|+++|.++++.+++++++++++|||+|||++|++|++..+.... .++++||
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~----~~~~~li 116 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP----QRLFALV 116 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC----CSSCEEE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC----CCceEEE
Confidence 567899999999999999999999999999999999999999999999999999999999998876532 2458999
Q ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhc-CCcCCCCeeEEEEeccc
Q 008956 96 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM-RRISLNQVSYLVLDEAD 174 (547)
Q Consensus 96 l~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~-~~~~l~~~~~lVlDEaH 174 (547)
++||++|+.|+++.++++....++.+.+++|+.....+...+..+++|+|+||++|.+.+.. ..+.+.++++|||||||
T Consensus 117 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 117 LTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp ECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 99999999999999999988778889999999887777777788899999999999998875 45678899999999999
Q ss_pred ccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEe
Q 008956 175 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNI 225 (547)
Q Consensus 175 ~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i 225 (547)
++++++|...+..++..++..+|+++||||++..+.+++..++.+|..+.+
T Consensus 197 ~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 197 RILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999988765
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=4.2e-35 Score=280.49 Aligned_cols=207 Identities=35% Similarity=0.557 Sum_probs=185.2
Q ss_pred ccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 17 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 17 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
..+|+++++++.+++.+...||.+|+++|.++++.+++++++++++|||+|||++|++|++..+.... .++++||+
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil 78 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER----AEVQAVIT 78 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS----CSCCEEEE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc----CCceEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999998875421 25689999
Q ss_pred cCcHHHHHHHHHHHHHhccCC----ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEec
Q 008956 97 SPTRELATQIQDEAVKFGKSS----RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDE 172 (547)
Q Consensus 97 ~Ptr~L~~Q~~~~~~~~~~~~----~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 172 (547)
+||++|+.|+++++.++.... .+.+..++|+.........+..+++|+|+||++|.+++....+.+.++++|||||
T Consensus 79 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 158 (219)
T 1q0u_A 79 APTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDE 158 (219)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECS
T ss_pred cCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcC
Confidence 999999999999999988665 6788888888766655555556789999999999999988788888999999999
Q ss_pred ccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCc
Q 008956 173 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 227 (547)
Q Consensus 173 aH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~ 227 (547)
||++.+++|...+..++..+++..|++++|||++.++.++++.++.+|..+.+..
T Consensus 159 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 159 ADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred chHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 9999999999999999999999999999999999999999999999998876543
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.6e-34 Score=277.27 Aligned_cols=213 Identities=30% Similarity=0.499 Sum_probs=184.0
Q ss_pred cCCCCCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCC
Q 008956 10 GDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL 89 (547)
Q Consensus 10 g~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~ 89 (547)
-.+.|++..+|+++++++.+++.+...||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... .
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~----~ 81 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV----K 81 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC----C
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC----C
Confidence 346778889999999999999999999999999999999999999999999999999999999999998875421 2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEE
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLV 169 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 169 (547)
++++||++|+++|+.|+++.+.++....++.+..++|+.........+.. ++|+|+||++|.+.+......+.++++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 56899999999999999999999988888888889988876666555544 89999999999999988888889999999
Q ss_pred EecccccccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCc
Q 008956 170 LDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 227 (547)
Q Consensus 170 lDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~ 227 (547)
|||||++.+++|...+..++..+++..|++++|||+++.+.+++..++.+|..+.+..
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999998876543
No 64
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=289.84 Aligned_cols=215 Identities=27% Similarity=0.432 Sum_probs=186.9
Q ss_pred EEEEecCCCCCC---ccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCchHHHHHHHHHHHH
Q 008956 5 LLIFQGDEVPPP---FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIH 79 (547)
Q Consensus 5 ~~~~~g~~~p~~---~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g--~~vlv~a~TGsGKT~~~l~~~l~~ 79 (547)
++.+.+.+.+.| ..+|++++|++.+++.|..+||..||++|.++|+.++.+ +++|+++|||||||++|++|++..
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 455666665544 578999999999999999999999999999999999998 999999999999999999999988
Q ss_pred hhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC-CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhc-
Q 008956 80 LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM- 157 (547)
Q Consensus 80 l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~- 157 (547)
+... ..++++|||+||++|+.|+++.+..+... ..+.+...+++....... ...++|+|+||++|.+++..
T Consensus 156 l~~~----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 156 VEPA----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp CCTT----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT
T ss_pred hhcc----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc
Confidence 7542 22568999999999999999999999865 367788888776543322 45689999999999999965
Q ss_pred CCcCCCCeeEEEEeccccccc-CCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEeC
Q 008956 158 RRISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 226 (547)
Q Consensus 158 ~~~~l~~~~~lVlDEaH~ll~-~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~ 226 (547)
..+.+.++++|||||||+|++ .+|...+..|+..++..+|+++||||++..+..++..++.+|..+.+.
T Consensus 229 ~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 229 KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 567788999999999999998 689999999999999999999999999999999999999999988764
No 65
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=283.51 Aligned_cols=221 Identities=33% Similarity=0.555 Sum_probs=189.3
Q ss_pred EEEEecCCCCCCccCCccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHh
Q 008956 5 LLIFQGDEVPPPFMSFDAT----GFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHL 80 (547)
Q Consensus 5 ~~~~~g~~~p~~~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l 80 (547)
.|.+.+.++|.|+.+|+++ ++++.+++.+..+||..|+|+|.++++.+++++++++++|||+|||++|++|++..+
T Consensus 12 ~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 12 KIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp TEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 4678999999999999988 899999999999999999999999999999999999999999999999999999887
Q ss_pred hhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH-HHhhCCCcEEEECcHHHHHHHhcC-
Q 008956 81 KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL-KDIDRGVDIVVATPGRLNDILEMR- 158 (547)
Q Consensus 81 ~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~~~IlV~Tp~~L~~~l~~~- 158 (547)
.... ..++++|||+||++|+.|+++++.++....++.+..+.++....... .....+++|+|+||++|.+++...
T Consensus 92 ~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 168 (245)
T 3dkp_A 92 KQPA---NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDP 168 (245)
T ss_dssp CSCC---SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSS
T ss_pred hhcc---cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCC
Confidence 5422 23568999999999999999999999888788877766544322221 122346899999999999999866
Q ss_pred -CcCCCCeeEEEEeccccccc---CCcHHHHHHHHHhCC-CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcc
Q 008956 159 -RISLNQVSYLVLDEADRMLD---MGFEPQIRKIVKEVP-ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNV 228 (547)
Q Consensus 159 -~~~l~~~~~lVlDEaH~ll~---~g~~~~i~~i~~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~ 228 (547)
.+.+.++++|||||||++++ .+|...+..++..+. ...|+++||||++.++.+++..++.+|..+.+...
T Consensus 169 ~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 169 PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred CCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 46788999999999999998 578889998887764 57899999999999999999999999999887653
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=6.3e-34 Score=269.52 Aligned_cols=204 Identities=40% Similarity=0.676 Sum_probs=185.1
Q ss_pred CCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 19 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 19 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
+|+++++++.+++.+...||..|+|+|.++++.+++++++++++|||+|||++|++|++..+..... ...++++||++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-RGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-TTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCcEEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999988754221 123578999999
Q ss_pred cHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccccc
Q 008956 99 TRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 178 (547)
Q Consensus 99 tr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~ 178 (547)
+++|+.|+++.+.++... +.+..++++.........+..+++|+|+||++|.+++....+.+.++++||+||||++++
T Consensus 81 ~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 81 TRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp SHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 999999999999999765 667788888888777777778899999999999999988888889999999999999999
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEEe
Q 008956 179 MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNI 225 (547)
Q Consensus 179 ~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i 225 (547)
++|...+..++..+++..|++++|||+++.+.+++..++.+|..+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999999999999999999987754
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=282.37 Aligned_cols=203 Identities=37% Similarity=0.581 Sum_probs=181.0
Q ss_pred CCccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 19 SFDATG--FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 19 ~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
+|++++ +++.+++.|..+||..|+++|.++++.++.++++++++|||+|||++|++|++..+.........+.++|||
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil 132 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLIL 132 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEE
Confidence 455555 899999999999999999999999999999999999999999999999999999887644333346789999
Q ss_pred cCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcC-CcCCCCeeEEEEecccc
Q 008956 97 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR-RISLNQVSYLVLDEADR 175 (547)
Q Consensus 97 ~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlDEaH~ 175 (547)
+||++|+.|+++.++++....++.+..++|+.........+..+++|+|+||++|.+.+... .+.+.++++|||||||+
T Consensus 133 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~ 212 (262)
T 3ly5_A 133 SPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR 212 (262)
T ss_dssp CSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH
T ss_pred eCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH
Confidence 99999999999999999988888899999999888888888888999999999999988754 46788999999999999
Q ss_pred cccCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCe
Q 008956 176 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPV 221 (547)
Q Consensus 176 ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 221 (547)
+++++|...+..++..++..+|+++||||+++.+.++++.++..+.
T Consensus 213 l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 213 ILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999998887554
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-33 Score=270.27 Aligned_cols=207 Identities=29% Similarity=0.516 Sum_probs=181.7
Q ss_pred CCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEE
Q 008956 14 PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTV 93 (547)
Q Consensus 14 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~v 93 (547)
+....+|++++|++.+++.|...||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~----~~~~~~ 85 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV----TGQVSV 85 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC----TTCCCE
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc----CCCEEE
Confidence 3344669999999999999999999999999999999999999999999999999999999998876432 124589
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCC-ceEEEEecCCCCChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEEEEe
Q 008956 94 LVLSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYLVLD 171 (547)
Q Consensus 94 Lil~Ptr~L~~Q~~~~~~~~~~~~-~i~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlD 171 (547)
||++||++|+.|++++++++.... ++.+..++|+.........+.. .++|+|+||++|.+++....+.+.++++||||
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 999999999999999999998764 6888889998877766666654 47999999999999998888888999999999
Q ss_pred ccccccc-CCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCCeEEE
Q 008956 172 EADRMLD-MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVN 224 (547)
Q Consensus 172 EaH~ll~-~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~ 224 (547)
|||++++ .+|...+..++..++...|++++|||++..+.++++.++.+|..+.
T Consensus 166 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 166 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 9999987 4788889999999998999999999999999999999999988764
No 69
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.3e-33 Score=309.44 Aligned_cols=273 Identities=19% Similarity=0.178 Sum_probs=201.8
Q ss_pred HHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCC
Q 008956 49 WPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGA 128 (547)
Q Consensus 49 i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~ 128 (547)
....+++++++++||||||||+.+ +..+.. .+..+|++||++||.|+++.+.+. ++.+..++|+.
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~a----l~~l~~-------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~ 213 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYHA----IQKYFS-------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEE 213 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHHH----HHHHHH-------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSC
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH----HHHHHh-------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCe
Confidence 345678899999999999999833 333333 124599999999999999999886 45677777765
Q ss_pred CChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCC-CCceEEEEeccCcH
Q 008956 129 PKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP-ARRQTLMYTATWPR 207 (547)
Q Consensus 129 ~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~-~~~q~l~~SAT~~~ 207 (547)
.... ....+..+++++|++.+. ....+++|||||||++++.++...+..++..++ ...+++++|||.+
T Consensus 214 ~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~- 282 (677)
T 3rc3_A 214 RVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID- 282 (677)
T ss_dssp EECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-
T ss_pred eEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-
Confidence 4310 000112678888886552 246789999999999999999999999998888 6789999999953
Q ss_pred HHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-
Q 008956 208 EVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 286 (547)
Q Consensus 208 ~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~- 286 (547)
.+..+.... .....+.... . . ....+ .... + ..+.... ...||||+++++++.+++.|.+.
T Consensus 283 ~i~~l~~~~-~~~~~v~~~~--r---~--~~l~~--~~~~-----l-~~l~~~~--~g~iIf~~s~~~ie~la~~L~~~g 344 (677)
T 3rc3_A 283 LVMELMYTT-GEEVEVRDYK--R---L--TPISV--LDHA-----L-ESLDNLR--PGDCIVCFSKNDIYSVSRQIEIRG 344 (677)
T ss_dssp HHHHHHHHH-TCCEEEEECC--C---S--SCEEE--CSSC-----C-CSGGGCC--TTEEEECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc-CCceEEEEee--e---c--chHHH--HHHH-----H-HHHHhcC--CCCEEEEcCHHHHHHHHHHHHhcC
Confidence 344444433 2333321110 0 0 00000 0000 0 0111222 34588999999999999999865
Q ss_pred cceEEEcCCCCHHHHHHHHHHhhc--CCCcEEEEccccccCCCCCCccEEEEcCC--------------CCChhhhHhhh
Q 008956 287 FGAAAIHGDKSQSERDYVLNQFRA--GRSPVLVATDVAARGLDIKDIRVVVNYDF--------------PTGVEDYVHRI 350 (547)
Q Consensus 287 ~~~~~ihg~~~~~~R~~~l~~F~~--g~~~ILVaT~~~~~GiDip~v~~VI~~d~--------------p~s~~~yiQri 350 (547)
+.+..+||+|++.+|+.+++.|++ |.++|||||+++++|||+ ++++||+++. |.+..+|+||+
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 889999999999999999999999 889999999999999999 9999999999 78999999999
Q ss_pred ccccCCCCc---eEEEEEe
Q 008956 351 GRTGRAGAT---GVAYTFF 366 (547)
Q Consensus 351 GR~gR~g~~---g~~~~l~ 366 (547)
|||||.|.. |.|+.++
T Consensus 424 GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp TTBTCTTSSCSSEEEEESS
T ss_pred cCCCCCCCCCCCEEEEEEe
Confidence 999999964 6666554
No 70
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.3e-32 Score=299.37 Aligned_cols=322 Identities=16% Similarity=0.187 Sum_probs=217.8
Q ss_pred CCcHHHHHHHHHHh---------CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 40 SPTPIQAQSWPIAL---------QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 40 ~~~~~Q~~~i~~il---------~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
.|+|||.+++.+++ .++.+|+..+||+|||++++..+...+...........++|||||+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 78999999999874 3467899999999999988777666554422211123579999997 8999999999
Q ss_pred HHhccCCceEEEEecCCCCCh--hhHHHhh------CCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcH
Q 008956 111 VKFGKSSRISCTCLYGGAPKG--PQLKDID------RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 182 (547)
Q Consensus 111 ~~~~~~~~i~~~~~~g~~~~~--~~~~~~~------~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~ 182 (547)
.++... .+.+..++++.... ..+.... ..++|+|+||+.+..... .+....+++||+||||++.+.. .
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~-~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD-N 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-H
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-h
Confidence 999765 45556666654322 1122221 137899999999976432 3444578999999999997653 2
Q ss_pred HHHHHHHHhCCCCceEEEEeccCcHHH----HH---------------HH------------------------------
Q 008956 183 PQIRKIVKEVPARRQTLMYTATWPREV----RK---------------IA------------------------------ 213 (547)
Q Consensus 183 ~~i~~i~~~l~~~~q~l~~SAT~~~~~----~~---------------~~------------------------------ 213 (547)
.....+..++ ....+++||||-.+. .. +.
T Consensus 210 -~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 287 (644)
T 1z3i_X 210 -QTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQEL 287 (644)
T ss_dssp -HHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHH
Confidence 2333344444 456799999973211 00 00
Q ss_pred HHhcCCCeEEEeCcccc-cccccceeEEEEE-------------------------------------------------
Q 008956 214 ADLLVNPVQVNIGNVDE-LAANKAITQHIEV------------------------------------------------- 243 (547)
Q Consensus 214 ~~~l~~~~~i~i~~~~~-~~~~~~i~~~~~~------------------------------------------------- 243 (547)
...+ .+..+....... ...+....+.+..
T Consensus 288 ~~~l-~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 288 ISIV-NRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHH-HHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHH-HHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 0000 000000000000 0000000000000
Q ss_pred ----------------------------cCccchHHHHHHHHHhc--CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEE
Q 008956 244 ----------------------------LAPMDKHRRLEQILRSQ--EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 292 (547)
Q Consensus 244 ----------------------------~~~~~k~~~l~~~l~~~--~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~i 292 (547)
.....|...+..++... ..+.++||||+++..++.+++.|... +.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 00122333444444432 24679999999999999999999754 889999
Q ss_pred cCCCCHHHHHHHHHHhhcCCCc---EEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceE--EEEEec
Q 008956 293 HGDKSQSERDYVLNQFRAGRSP---VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGV--AYTFFG 367 (547)
Q Consensus 293 hg~~~~~~R~~~l~~F~~g~~~---ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~--~~~l~~ 367 (547)
||+++..+|+.+++.|+++... +||+|+++++|||++.+++||+||+||++..|.|++||++|.|++.. +|.|+.
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~ 526 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 526 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEE
Confidence 9999999999999999998764 89999999999999999999999999999999999999999998764 444555
Q ss_pred CC
Q 008956 368 DQ 369 (547)
Q Consensus 368 ~~ 369 (547)
..
T Consensus 527 ~~ 528 (644)
T 1z3i_X 527 TG 528 (644)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-32 Score=306.64 Aligned_cols=329 Identities=14% Similarity=0.220 Sum_probs=226.7
Q ss_pred CCCcHHHHHHHHHHh----CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 39 SSPTPIQAQSWPIAL----QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il----~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
.+|+|||.+++++++ .++++|++++||+|||++++..+...+..... ..++||||| ..|+.||.+++.++.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~----~~~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ----NGPHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC----CSCEEEECC-TTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC----CCCEEEEEC-chHHHHHHHHHHHHC
Confidence 378999999998776 78899999999999999877665544433211 347999999 588999999999998
Q ss_pred cCCceEEEEecCCCCChhhHHHh------------hCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcH
Q 008956 115 KSSRISCTCLYGGAPKGPQLKDI------------DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 182 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~~~~~~~~~------------~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~ 182 (547)
.. +.+.+..|.......+... ...++|+|+||+.+..... .+....+++|||||||++.+..
T Consensus 310 p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lkn~~-- 383 (800)
T 3mwy_W 310 PD--LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLKNAE-- 383 (800)
T ss_dssp TT--CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGCCSS--
T ss_pred CC--ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhcCch--
Confidence 54 6666677665544433321 2357899999999976433 2223468999999999997643
Q ss_pred HHHHHHHHhCCCCceEEEEeccCc----HHHHHHHHHhcC-----------------------------CCeEEEeCccc
Q 008956 183 PQIRKIVKEVPARRQTLMYTATWP----REVRKIAADLLV-----------------------------NPVQVNIGNVD 229 (547)
Q Consensus 183 ~~i~~i~~~l~~~~q~l~~SAT~~----~~~~~~~~~~l~-----------------------------~~~~i~i~~~~ 229 (547)
..+...+..++ ....+++||||- .++..++.-+.. .+..+.....+
T Consensus 384 s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 384 SSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp SHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred hHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 34444555554 445788999972 122222221110 11111111100
Q ss_pred ccc-cccceeEEEEE-----------------------------------------------------------------
Q 008956 230 ELA-ANKAITQHIEV----------------------------------------------------------------- 243 (547)
Q Consensus 230 ~~~-~~~~i~~~~~~----------------------------------------------------------------- 243 (547)
... ........+.+
T Consensus 463 v~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 463 VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp GTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 000 00000000000
Q ss_pred ---------cCccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCC
Q 008956 244 ---------LAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR 312 (547)
Q Consensus 244 ---------~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~ 312 (547)
.....|...|..++... ..+.++||||+....++.|.+.|... +.+..+||.++..+|..+++.|+++.
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 00123444555666554 45679999999999999999999854 88999999999999999999999865
Q ss_pred C---cEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEE--EEecCCChHHHHHHHHHH
Q 008956 313 S---PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAY--TFFGDQDSRYASDLIKLL 381 (547)
Q Consensus 313 ~---~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~--~l~~~~~~~~~~~l~~~l 381 (547)
. .+|++|.++++|||++.+++||+||+||++..++|++||++|.|++..+. .|++.. ...+.+.+.+
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~--TiEe~i~~~~ 694 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD--TVEEEVLERA 694 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT--SHHHHHHHHH
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC--CHHHHHHHHH
Confidence 4 48999999999999999999999999999999999999999999876554 445443 3444444444
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1e-31 Score=306.16 Aligned_cols=312 Identities=16% Similarity=0.159 Sum_probs=211.0
Q ss_pred CCCcHHHHHHHHHHhC--------------CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHH
Q 008956 39 SSPTPIQAQSWPIALQ--------------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 104 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~--------------g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~ 104 (547)
..|+|+|.++++.++. +++++++++||||||+++ ++++..+... ....++|||||+++|+.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~----~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL----DFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC----TTCCEEEEEECGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc----CCCceEEEEeCcHHHHH
Confidence 3599999999999876 368999999999999997 4555444321 12359999999999999
Q ss_pred HHHHHHHHhccCCceEEEEecCCCCChhhHHHhh-CCCcEEEECcHHHHHHHhcCC--cCCCCeeEEEEecccccccCCc
Q 008956 105 QIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID-RGVDIVVATPGRLNDILEMRR--ISLNQVSYLVLDEADRMLDMGF 181 (547)
Q Consensus 105 Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~L~~~l~~~~--~~l~~~~~lVlDEaH~ll~~g~ 181 (547)
||.+++.++... .+.++.........+. ..++|+|+||++|..++.... ..+..+.+||+||||++..
T Consensus 345 Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--- 415 (1038)
T 2w00_A 345 QTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--- 415 (1038)
T ss_dssp HHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---
T ss_pred HHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---
Confidence 999999988653 1234444444545553 468999999999998876432 2355789999999999763
Q ss_pred HHHHHHHHHhCCCCceEEEEeccCcHHH--------HHH-------------HHHhcCCCeEEEeCcccc-cc---cc-c
Q 008956 182 EPQIRKIVKEVPARRQTLMYTATWPREV--------RKI-------------AADLLVNPVQVNIGNVDE-LA---AN-K 235 (547)
Q Consensus 182 ~~~i~~i~~~l~~~~q~l~~SAT~~~~~--------~~~-------------~~~~l~~~~~i~i~~~~~-~~---~~-~ 235 (547)
......|...+++ .++++|||||.... ..+ +.+-..-|..+....... .. .. .
T Consensus 416 ~~~~~~I~~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d 494 (1038)
T 2w00_A 416 GEAQKNLKKKFKR-YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETD 494 (1038)
T ss_dssp HHHHHHHHHHCSS-EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCC
T ss_pred hHHHHHHHHhCCc-ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccccc
Confidence 3445667777764 78999999987432 121 112122233222211000 00 00 0
Q ss_pred -----ceeEEEEEcCccchHHHH-HHHHHh---c-------CCCCeEEEEcCChHHHHHHHHHHhcc-------------
Q 008956 236 -----AITQHIEVLAPMDKHRRL-EQILRS---Q-------EPGSKIIVFCSTKKMCDQLARNLTRQ------------- 286 (547)
Q Consensus 236 -----~i~~~~~~~~~~~k~~~l-~~~l~~---~-------~~~~k~IVF~~s~~~~~~l~~~L~~~------------- 286 (547)
.+.+. .......+...+ ..++.. . ..+.++||||+++..|..+++.|.+.
T Consensus 495 ~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~ 573 (1038)
T 2w00_A 495 EKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKP 573 (1038)
T ss_dssp HHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccccc
Confidence 00000 000111111222 223221 1 13468999999999999999998753
Q ss_pred cceE-EEcCC----------C----------CH-----------------------------HHHHHHHHHhhcCCCcEE
Q 008956 287 FGAA-AIHGD----------K----------SQ-----------------------------SERDYVLNQFRAGRSPVL 316 (547)
Q Consensus 287 ~~~~-~ihg~----------~----------~~-----------------------------~~R~~~l~~F~~g~~~IL 316 (547)
+.+. ++|++ + ++ ..|+.++++|++++++||
T Consensus 574 ~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~IL 653 (1038)
T 2w00_A 574 LRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLL 653 (1038)
T ss_dssp CCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred CcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 3443 45542 2 22 147889999999999999
Q ss_pred EEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCc----eEEEEEec
Q 008956 317 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGAT----GVAYTFFG 367 (547)
Q Consensus 317 VaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~----g~~~~l~~ 367 (547)
|+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|++
T Consensus 654 Ivvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 654 IVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999999 778899999999999999999998754 66776664
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.98 E-value=1.2e-30 Score=278.67 Aligned_cols=319 Identities=18% Similarity=0.168 Sum_probs=232.5
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
|. .|+++|....-.+.+|+ |+.+.||+|||+++.+|++..... +..+.||+|+..||.|-++++..+...
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-------G~~vhVvT~ndyLA~rdae~m~~l~~~ 142 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-------GKGVHLVTVNDYLARRDALWMGPVYLF 142 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-------SSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-------CCceEEEeccHHHHHhHHHHHHHHHHH
Confidence 44 78999999988888777 899999999999999999866555 678999999999999999999999999
Q ss_pred CceEEEEecCCC------------------------------------------------CChhhHHHhhCCCcEEEECc
Q 008956 117 SRISCTCLYGGA------------------------------------------------PKGPQLKDIDRGVDIVVATP 148 (547)
Q Consensus 117 ~~i~~~~~~g~~------------------------------------------------~~~~~~~~~~~~~~IlV~Tp 148 (547)
.++++.+++... ......++-.-.|+|+.+|.
T Consensus 143 Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn 222 (822)
T 3jux_A 143 LGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTN 222 (822)
T ss_dssp TTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEH
T ss_pred hCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccC
Confidence 999999888721 00001111122389999999
Q ss_pred HHH-HHHHhcCC------cCCCCeeEEEEecccccccC---------------------------------Cc-------
Q 008956 149 GRL-NDILEMRR------ISLNQVSYLVLDEADRMLDM---------------------------------GF------- 181 (547)
Q Consensus 149 ~~L-~~~l~~~~------~~l~~~~~lVlDEaH~ll~~---------------------------------g~------- 181 (547)
.-| .|+|.... .-...+.+.||||+|.+|=. .|
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~ 302 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKAR 302 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSS
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccC
Confidence 876 35665432 22356889999999954410 00
Q ss_pred -----HH---HHH------------------HHHH------hCCC-----------------------------------
Q 008956 182 -----EP---QIR------------------KIVK------EVPA----------------------------------- 194 (547)
Q Consensus 182 -----~~---~i~------------------~i~~------~l~~----------------------------------- 194 (547)
.. .+. .+.. .+..
T Consensus 303 ~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQai 382 (822)
T 3jux_A 303 TIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAI 382 (822)
T ss_dssp CEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHH
T ss_pred eEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHH
Confidence 00 000 0000 0000
Q ss_pred --------------------------CceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeE-EEEEcCcc
Q 008956 195 --------------------------RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ-HIEVLAPM 247 (547)
Q Consensus 195 --------------------------~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~-~~~~~~~~ 247 (547)
-.++.+||+|...+..++...+-. ..+.+.... +...+.+ ........
T Consensus 383 EaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l--~vv~IPtnk---p~~R~d~~d~vy~t~~ 457 (822)
T 3jux_A 383 EAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM--EVVVIPTHK---PMIRKDHDDLVFRTQK 457 (822)
T ss_dssp HHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC--CEEECCCSS---CCCCEECCCEEESSHH
T ss_pred HHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC--eEEEECCCC---CcceeecCcEEEecHH
Confidence 026788999998776666554432 233332211 1111222 24456677
Q ss_pred chHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccC
Q 008956 248 DKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARG 325 (547)
Q Consensus 248 ~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~G 325 (547)
+|...+...+... ..+.++||||+|++.++.+++.|++. +++.++|++..+.++..+...++.+ .|+|||++++||
T Consensus 458 eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRG 535 (822)
T 3jux_A 458 EKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRG 535 (822)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTT
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCC
Confidence 8888888887754 35679999999999999999999875 8999999996666666666666655 699999999999
Q ss_pred CCCC--------CccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChH
Q 008956 326 LDIK--------DIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSR 372 (547)
Q Consensus 326 iDip--------~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~ 372 (547)
+||+ +..+||++++|.+...|+||+|||||+|.+|.+++|++..|..
T Consensus 536 tDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 536 TDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp CCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred cCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHH
Confidence 9998 6679999999999999999999999999999999999987743
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=3.6e-27 Score=260.02 Aligned_cols=174 Identities=18% Similarity=0.195 Sum_probs=130.1
Q ss_pred CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHh-cCCCCeEEEEcCC
Q 008956 194 ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRS-QEPGSKIIVFCST 272 (547)
Q Consensus 194 ~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~-~~~~~k~IVF~~s 272 (547)
...|++++|||++...... . ...+....... ... .. .+.......+...+...+.. ...+.++||||+|
T Consensus 379 ~~~q~i~~SAT~~~~~~~~-----~-~~~~~~~~r~~-~l~--~p-~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t 448 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH-----S-GRVVEQIIRPT-GLL--DP-LVRVKPTENQILDLMEGIRERAARGERTLVTVLT 448 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH-----C-SEEEEECSCTT-CCC--CC-EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred hcCCEEEEecCCCHHHHHh-----h-hCeeeeeeccC-CCC--CC-eEEEecccchHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3578999999998654221 0 11111111000 000 01 12222233344444444433 3456799999999
Q ss_pred hHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCC-----CCChhhh
Q 008956 273 KKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF-----PTGVEDY 346 (547)
Q Consensus 273 ~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~-----p~s~~~y 346 (547)
+..++.+++.|.+. +.+..+|+++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.+..+|
T Consensus 449 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~ 528 (664)
T 1c4o_A 449 VRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 528 (664)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHH
T ss_pred HHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHH
Confidence 99999999999865 78999999999999999999999999999999999999999999999999997 8999999
Q ss_pred HhhhccccCCCCceEEEEEecCCChHHHHHHH
Q 008956 347 VHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 378 (547)
Q Consensus 347 iQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~ 378 (547)
+||+||+||.+ +|.+++|++..+......+.
T Consensus 529 iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 529 IQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 99999999995 79999999887766555444
No 75
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=221.87 Aligned_cols=167 Identities=44% Similarity=0.726 Sum_probs=142.1
Q ss_pred ccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhc
Q 008956 232 AANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA 310 (547)
Q Consensus 232 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~ 310 (547)
.....+.|.+..+...+|...|.+++.....+.++||||+++..++.+++.|+.. +.+..+||++++.+|+.+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 3456789999999999999999999998766789999999999999999999865 889999999999999999999999
Q ss_pred CCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccH
Q 008956 311 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPR 390 (547)
Q Consensus 311 g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~ 390 (547)
++++|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|++|.+++|+++.+......+.+.++...+.+|.
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 008956 391 ELRDMASR 398 (547)
Q Consensus 391 ~l~~l~~~ 398 (547)
+|.+++..
T Consensus 175 ~l~~~a~~ 182 (185)
T 2jgn_A 175 WLENMAYE 182 (185)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99998853
No 76
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=222.15 Aligned_cols=178 Identities=38% Similarity=0.561 Sum_probs=146.0
Q ss_pred HhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEc
Q 008956 215 DLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIH 293 (547)
Q Consensus 215 ~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ih 293 (547)
.++.+|..+.+.... .....+.|.+..+....|...|.+++... +.++||||+++..++.+++.|+.. +.+..+|
T Consensus 10 ~~~~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 10 GVDLGTENLYFQSMG--AASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cccCCCEEEEECCCC--CCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 356677777665543 34456888888899999999999998764 358999999999999999999854 8899999
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCC-ChH
Q 008956 294 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ-DSR 372 (547)
Q Consensus 294 g~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~-~~~ 372 (547)
|++++.+|+.+++.|++++++|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|++|.+++|+++. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876 778
Q ss_pred HHHHHHHHHHHhcccccHHHHHHH
Q 008956 373 YASDLIKLLEGAKQQVPRELRDMA 396 (547)
Q Consensus 373 ~~~~l~~~l~~~~~~v~~~l~~l~ 396 (547)
+...+.+.++...+.+|.+|.+++
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHHHccCcCCHHHHhhc
Confidence 889999999999999999987764
No 77
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=3.5e-26 Score=248.65 Aligned_cols=131 Identities=21% Similarity=0.206 Sum_probs=113.8
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 35 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 35 ~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
..|+ .|+++|..+++.+++|+ |+.++||+|||++|++|++..... +..++||+||++||.|.++++..++
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 3588 99999999999999998 999999999999999999755443 5589999999999999999999999
Q ss_pred cCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHH-HHHHhcCC------cCCC---CeeEEEEecccccc
Q 008956 115 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRL-NDILEMRR------ISLN---QVSYLVLDEADRML 177 (547)
Q Consensus 115 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~---~~~~lVlDEaH~ll 177 (547)
...++++.+++|+... ..+....+|+|+|+||++| .+++.... +.+. .+.++||||||+|+
T Consensus 145 ~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999998763 3344445799999999999 88887653 4567 89999999999987
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=2.9e-26 Score=252.74 Aligned_cols=174 Identities=21% Similarity=0.224 Sum_probs=131.1
Q ss_pred CCceEEEEeccCcHHHHHHHHHhcCCCeEEEeCcccccccccceeEEEEEcCccchHHHHHHHHH-hcCCCCeEEEEcCC
Q 008956 194 ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILR-SQEPGSKIIVFCST 272 (547)
Q Consensus 194 ~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~-~~~~~~k~IVF~~s 272 (547)
..+|++++|||++....... .......+... .. . ... +.......+...+...+. ....+.++||||+|
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~-~l-~---~p~-i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t 454 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DEMVEQIIRPT-GL-L---DPL-IDVRPIEGQIDDLIGEIQARIERNERVLVTTLT 454 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SSCEEECCCTT-CC-C---CCE-EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred cCCCEEEEecCCChhHHHhh----hCeeeeeeccc-CC-C---CCe-EEEecccchHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46799999999986543221 11111111100 00 0 011 222223334444444443 34566899999999
Q ss_pred hHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccccccCCCCCCccEEEEcCC-----CCChhhh
Q 008956 273 KKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDF-----PTGVEDY 346 (547)
Q Consensus 273 ~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~~~GiDip~v~~VI~~d~-----p~s~~~y 346 (547)
+..++.+++.|.+. +.+..+|+++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+..+|
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~ 534 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 534 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHH
Confidence 99999999999865 88999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HhhhccccCCCCceEEEEEecCCChHHHHHHH
Q 008956 347 VHRIGRTGRAGATGVAYTFFGDQDSRYASDLI 378 (547)
Q Consensus 347 iQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~ 378 (547)
+||+||+||. .+|.+++|+++.+......+.
T Consensus 535 iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 535 IQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 9999999999 789999999988776555443
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=1.9e-25 Score=203.23 Aligned_cols=151 Identities=37% Similarity=0.613 Sum_probs=138.2
Q ss_pred ccceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCC
Q 008956 234 NKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR 312 (547)
Q Consensus 234 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~ 312 (547)
...+.+.+..+...+|...|..++.... ..++||||+++..++.+++.|.+. +.+..+|+++++.+|..+++.|++++
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTEN-PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcC-CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 3458888888999999999999998764 469999999999999999999865 88999999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhc
Q 008956 313 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAK 385 (547)
Q Consensus 313 ~~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~ 385 (547)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|++|.+++|+.+.+..+...+.+.+....
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 158 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEI 158 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCC
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCc
Confidence 9999999999999999999999999999999999999999999999999999999988888888777664433
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=8.1e-26 Score=206.10 Aligned_cols=156 Identities=33% Similarity=0.640 Sum_probs=135.2
Q ss_pred ceeEEEEEcCccc-hHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCC
Q 008956 236 AITQHIEVLAPMD-KHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 313 (547)
Q Consensus 236 ~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~ 313 (547)
.+.|.+..+...+ |...|..++.... ..++||||+++..++.+++.|.+. +.+..+|+++++.+|..+++.|+++++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSIS-VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTT-CSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 3667777777666 9999999998764 479999999999999999999864 889999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcccccHHH
Q 008956 314 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 392 (547)
Q Consensus 314 ~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~v~~~l 392 (547)
+|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|++|.+++|+++.+......+.+.+....+.+|..+
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccH
Confidence 9999999999999999999999999999999999999999999999999999999998888888887776666666543
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=1.3e-25 Score=206.17 Aligned_cols=159 Identities=33% Similarity=0.538 Sum_probs=140.0
Q ss_pred cceeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCC
Q 008956 235 KAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 313 (547)
Q Consensus 235 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~ 313 (547)
..+.|++..+...+|...|..+++... ..++||||+++..++.+++.|.+. +.+..+|+++++.+|..+++.|++|++
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLE-FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSC-CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCC-CCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 357788888889999999999998764 469999999999999999999864 889999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCC-ChHHHHHHHHHHHHhcccccHHH
Q 008956 314 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPREL 392 (547)
Q Consensus 314 ~ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~-~~~~~~~l~~~l~~~~~~v~~~l 392 (547)
+|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|+.|.+++|+++. +......+.+.+......+|.++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999875 45667777777777777787765
Q ss_pred HH
Q 008956 393 RD 394 (547)
Q Consensus 393 ~~ 394 (547)
..
T Consensus 163 ~~ 164 (172)
T 1t5i_A 163 DI 164 (172)
T ss_dssp --
T ss_pred ch
Confidence 43
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=8.4e-25 Score=201.35 Aligned_cols=153 Identities=29% Similarity=0.530 Sum_probs=132.7
Q ss_pred cceeEEEEEcCccc-hHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCC
Q 008956 235 KAITQHIEVLAPMD-KHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR 312 (547)
Q Consensus 235 ~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~ 312 (547)
..+.|.+..+...+ |...|..+++... ..++||||+++..++.+++.|.+. +.+..+|+++++.+|..+++.|++|+
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSIT-IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTSC-CSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 45788888777655 8899998887764 469999999999999999999865 88999999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCccEEEEcCCC------CChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhcc
Q 008956 313 SPVLVATDVAARGLDIKDIRVVVNYDFP------TGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAKQ 386 (547)
Q Consensus 313 ~~ILVaT~~~~~GiDip~v~~VI~~d~p------~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~ 386 (547)
++|||||+++++|+|+|++++||+||+| .++.+|+||+||++|.|+.|.+++|+.+.+......+.+.+....+
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 164 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIK 164 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCE
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999 8999999999999999999999999999888877777777655444
Q ss_pred cc
Q 008956 387 QV 388 (547)
Q Consensus 387 ~v 388 (547)
.+
T Consensus 165 ~~ 166 (175)
T 2rb4_A 165 QL 166 (175)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=5.1e-24 Score=202.25 Aligned_cols=147 Identities=38% Similarity=0.566 Sum_probs=130.5
Q ss_pred eeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcE
Q 008956 237 ITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPV 315 (547)
Q Consensus 237 i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~I 315 (547)
+.+.........|...|..++.... +.++||||+++..++.+++.|.+. +.+..+||++++.+|+.+++.|++|.++|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHC-CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 3444556677889999999988665 469999999999999999999864 88999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHh
Q 008956 316 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGA 384 (547)
Q Consensus 316 LVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~ 384 (547)
||||+++++|||+|++++||+||+|+++.+|+||+||+||.|++|.|++|+++.+......+.+.+...
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999998888777777666543
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=1.6e-24 Score=205.89 Aligned_cols=169 Identities=22% Similarity=0.198 Sum_probs=124.5
Q ss_pred HHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHH-HHHHHHH
Q 008956 34 HNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQ-IQDEAVK 112 (547)
Q Consensus 34 ~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q-~~~~~~~ 112 (547)
.......|+++|.++++.+++++++++.+|||+|||++++++++..+...... ..+.++||++|+++|+.| +.+.+.+
T Consensus 27 ~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 27 SPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-SEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-TCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred CccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-cCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 33456799999999999999999999999999999999999988776543211 124689999999999999 7888888
Q ss_pred hccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCC------cCCCCeeEEEEecccccccCCcHHHHH
Q 008956 113 FGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR------ISLNQVSYLVLDEADRMLDMGFEPQIR 186 (547)
Q Consensus 113 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~------~~l~~~~~lVlDEaH~ll~~g~~~~i~ 186 (547)
+... .+.+..+.++......+..+...++|+|+||++|.+.+.... ..+.++++|||||||++.+.++...+.
T Consensus 106 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 106 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred Hhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 8754 577888888877766666666678999999999999887643 557789999999999998776555443
Q ss_pred -HHHHhC-------------CCCceEEEEecc
Q 008956 187 -KIVKEV-------------PARRQTLMYTAT 204 (547)
Q Consensus 187 -~i~~~l-------------~~~~q~l~~SAT 204 (547)
.++... .+..++|++|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 322221 156789999998
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=1.7e-23 Score=208.34 Aligned_cols=145 Identities=38% Similarity=0.576 Sum_probs=127.6
Q ss_pred eeEEEEEcCccchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcE
Q 008956 237 ITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPV 315 (547)
Q Consensus 237 i~~~~~~~~~~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~I 315 (547)
+.+.+..+...+|...|..++.... ..++||||++++.++.+++.|.+. +.+..+||++++.+|+.+++.|++|.++|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4566777888899999999998766 579999999999999999999764 88999999999999999999999999999
Q ss_pred EEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHH
Q 008956 316 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLE 382 (547)
Q Consensus 316 LVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~ 382 (547)
||||+++++|||+|++++||+||+|+++.+|+||+||+||.|++|.|++|+++.+......+.+.+.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999988776666655543
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=1.4e-23 Score=226.66 Aligned_cols=102 Identities=17% Similarity=0.283 Sum_probs=67.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcccceEEEcCCCCHHHHHHHHHHhhcCCCcEEE--EccccccCCCCCC----ccEEE
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLV--ATDVAARGLDIKD----IRVVV 335 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILV--aT~~~~~GiDip~----v~~VI 335 (547)
....+|||++|...++.+++.|.. ++ ..+++.. .+++.+++.|+++. .||+ +|+.+++|||+|+ +++||
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~-~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG-IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT-SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc-Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 346899999999999999998864 33 3455554 46888999999864 5777 8899999999997 88999
Q ss_pred EcCCCC-Ch-----------------------------hhhHhhhccccCCCCceEEEEEecC
Q 008956 336 NYDFPT-GV-----------------------------EDYVHRIGRTGRAGATGVAYTFFGD 368 (547)
Q Consensus 336 ~~d~p~-s~-----------------------------~~yiQriGR~gR~g~~g~~~~l~~~ 368 (547)
++++|. ++ ..+.|.+||+-|...+.-++++++.
T Consensus 458 i~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 458 LAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 999995 22 1245899999998666556666653
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.81 E-value=8.1e-25 Score=200.48 Aligned_cols=148 Identities=32% Similarity=0.505 Sum_probs=130.5
Q ss_pred eeEEEEEcCc-cchHHHHHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCc
Q 008956 237 ITQHIEVLAP-MDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSP 314 (547)
Q Consensus 237 i~~~~~~~~~-~~k~~~l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ 314 (547)
+.+.+..+.. ..|...|..+++.. .+.++||||+++..++.+++.|++. +.+..+||++++.+|..+++.|++|+++
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 4555556665 77888888888764 3479999999999999999999865 7899999999999999999999999999
Q ss_pred EEEEccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEEEEEecCCChHHHHHHHHHHHHhc
Q 008956 315 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGAK 385 (547)
Q Consensus 315 ILVaT~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~ 385 (547)
|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|++|.+++|++..+......+.+.+....
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 153 (170)
Confidence 99999999999999999999999999999999999999999999999999999888877777776654433
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.88 E-value=1.8e-22 Score=200.42 Aligned_cols=156 Identities=19% Similarity=0.169 Sum_probs=128.0
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 118 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~ 118 (547)
.+|+|+|.++++.++++++.++++|||+|||+++++++...+... ..++|||+|+++|+.||.+++.++.....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~------~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY------EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC------SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC------CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 489999999999999988999999999999999988877765441 23899999999999999999999987767
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceE
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 198 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~ 198 (547)
..+..++++..... .....++|+|+||+.|... ....+.++++|||||||++. .+.+..++..+....++
T Consensus 186 ~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~~ 255 (282)
T 1rif_A 186 AMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFK 255 (282)
T ss_dssp GGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEE
T ss_pred ceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCeE
Confidence 77888888765543 2234689999999987542 22346789999999999986 45788888888788999
Q ss_pred EEEeccCcHHHH
Q 008956 199 LMYTATWPREVR 210 (547)
Q Consensus 199 l~~SAT~~~~~~ 210 (547)
+++|||+++...
T Consensus 256 l~lSATp~~~~~ 267 (282)
T 1rif_A 256 FGLSGSLRDGKA 267 (282)
T ss_dssp EEECSSCCTTST
T ss_pred EEEeCCCCCcch
Confidence 999999986543
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=2.1e-20 Score=202.64 Aligned_cols=309 Identities=16% Similarity=0.120 Sum_probs=195.5
Q ss_pred CCcHHHHHHHHHH----hCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 40 SPTPIQAQSWPIA----LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 40 ~~~~~Q~~~i~~i----l~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
+++|+|.+++..+ ..++++++.||||+|||++|++|++.. ++++||++||++|+.|+.+++..+..
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------KPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------CSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------CCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 7999999988754 578999999999999999999999872 56999999999999999999998876
Q ss_pred CCceEEEEecCCCCC---------------------------------hhhH------------------HHhhCCCcEE
Q 008956 116 SSRISCTCLYGGAPK---------------------------------GPQL------------------KDIDRGVDIV 144 (547)
Q Consensus 116 ~~~i~~~~~~g~~~~---------------------------------~~~~------------------~~~~~~~~Il 144 (547)
..++++..+.|.... .... +.....++||
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIV 152 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVI 152 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEE
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEE
Confidence 667777777663210 0111 2234568999
Q ss_pred EECcHHHHHHHhcCCcCC-CCeeEEEEecccccccCC-------------------------------------------
Q 008956 145 VATPGRLNDILEMRRISL-NQVSYLVLDEADRMLDMG------------------------------------------- 180 (547)
Q Consensus 145 V~Tp~~L~~~l~~~~~~l-~~~~~lVlDEaH~ll~~g------------------------------------------- 180 (547)
|+||..|.+...+..+.+ ....+|||||||+|.+ .
T Consensus 153 V~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~ 231 (551)
T 3crv_A 153 ALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPD 231 (551)
T ss_dssp EEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred EeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999998755443333 4678999999998776 1
Q ss_pred ------------cHHHHHHH----------------------------HH----------------------------hC
Q 008956 181 ------------FEPQIRKI----------------------------VK----------------------------EV 192 (547)
Q Consensus 181 ------------~~~~i~~i----------------------------~~----------------------------~l 192 (547)
+...+..+ +. .+
T Consensus 232 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~ 311 (551)
T 3crv_A 232 EKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLL 311 (551)
T ss_dssp SSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGG
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHH
Confidence 00000000 00 01
Q ss_pred CCC-ceEEEEeccCcHHHHHHHHHhcCCC--eEE---EeCcccccccccceeEEEEE-cCc------cchHHHHHHHHHh
Q 008956 193 PAR-RQTLMYTATWPREVRKIAADLLVNP--VQV---NIGNVDELAANKAITQHIEV-LAP------MDKHRRLEQILRS 259 (547)
Q Consensus 193 ~~~-~q~l~~SAT~~~~~~~~~~~~l~~~--~~i---~i~~~~~~~~~~~i~~~~~~-~~~------~~k~~~l~~~l~~ 259 (547)
... +.+|++|||+.+ . ..+...+.-+ ... .+...... .......+.. ... ......+.+.+..
T Consensus 312 ~~~~~svIltSaTL~~-~-~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~ 387 (551)
T 3crv_A 312 NDNELSIILMSGTLPP-R-EYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLK 387 (551)
T ss_dssp GCTTCEEEEEESSCCC-H-HHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHH
T ss_pred hccCceEEEEeeCCCc-H-HHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHH
Confidence 123 678899999875 3 3333333322 210 00001111 1111111110 110 1112233333322
Q ss_pred c--CCCCeEEEEcCChHHHHHHHHHHhcccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEc--cccccCCCCC-----C
Q 008956 260 Q--EPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT--DVAARGLDIK-----D 330 (547)
Q Consensus 260 ~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT--~~~~~GiDip-----~ 330 (547)
. .....+|||++|...++.+++.+ ..++..-..+++ +..+++.|+...-.||++| ..+++|||+| .
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~~~--~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~ 462 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMSRI--SLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSL 462 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHTTC--CSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEES
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHhc--CCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcc
Confidence 1 12358999999999999998732 233333223444 3457888864445799998 6999999999 3
Q ss_pred ccEEEEcCCCCC-h------------------h-----------hhHhhhccccCCCCceEEEEEecC
Q 008956 331 IRVVVNYDFPTG-V------------------E-----------DYVHRIGRTGRAGATGVAYTFFGD 368 (547)
Q Consensus 331 v~~VI~~d~p~s-~------------------~-----------~yiQriGR~gR~g~~g~~~~l~~~ 368 (547)
+..||...+|.. + . .+.|.+||+-|...+.-++++++.
T Consensus 463 l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 463 ISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp EEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred eeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 788999887751 1 0 124889999998777667777754
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=188.53 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=121.7
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
....++++|.++++.+.++++++++++||||||+++.++++........ .....+++++|+++|+.|+.+.+......
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 3456899999999999999999999999999999888888776554221 12358999999999999999888766532
Q ss_pred -CceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccc-ccCCcH-HHHHHHHHhCC
Q 008956 117 -SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM-LDMGFE-PQIRKIVKEVP 193 (547)
Q Consensus 117 -~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~l-l~~g~~-~~i~~i~~~l~ 193 (547)
.+..+........ ......++|+|+||++|.+.+.. .+.++++|||||||++ ++++|. ..++.++...+
T Consensus 136 ~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~ 207 (235)
T 3llm_A 136 EPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP 207 (235)
T ss_dssp CTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred ccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC
Confidence 2222221111000 00113478999999999998875 4789999999999986 777776 46666666664
Q ss_pred CCceEEEEeccCcHHH
Q 008956 194 ARRQTLMYTATWPREV 209 (547)
Q Consensus 194 ~~~q~l~~SAT~~~~~ 209 (547)
..|+++||||++.+.
T Consensus 208 -~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 208 -EVRIVLMSATIDTSM 222 (235)
T ss_dssp -TSEEEEEECSSCCHH
T ss_pred -CCeEEEEecCCCHHH
Confidence 689999999999766
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=3.1e-19 Score=172.19 Aligned_cols=139 Identities=22% Similarity=0.130 Sum_probs=108.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
.|+++|.++++.+++++++++++|||+|||++++.++... +.++||++|+++|+.||.+++.++ ++
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~----~~ 158 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKERLGIF----GE 158 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----------CSCEEEEESSHHHHHHHHHHHGGG----CG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHhC----CC
Confidence 7899999999999999999999999999999988765542 348999999999999999999884 34
Q ss_pred E-EEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceE
Q 008956 120 S-CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 198 (547)
Q Consensus 120 ~-~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~ 198 (547)
. +..+.++.. ...+|+|+||+.+...... ...++++|||||||++.+..+ ..++..++ ..++
T Consensus 159 ~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~~-~~~~ 221 (237)
T 2fz4_A 159 EYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMSI-APFR 221 (237)
T ss_dssp GGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTCC-CSEE
T ss_pred CeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhcc-CCEE
Confidence 5 556666543 2468999999998765542 124589999999999977654 34555554 5788
Q ss_pred EEEeccCcHHH
Q 008956 199 LMYTATWPREV 209 (547)
Q Consensus 199 l~~SAT~~~~~ 209 (547)
|++|||+++..
T Consensus 222 l~LSATp~r~D 232 (237)
T 2fz4_A 222 LGLTATFERED 232 (237)
T ss_dssp EEEEESCC---
T ss_pred EEEecCCCCCC
Confidence 99999998643
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.79 E-value=3.6e-18 Score=186.65 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=72.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHhcccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc--ccccCCCCCC--ccEEEEcC
Q 008956 263 GSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD--VAARGLDIKD--IRVVVNYD 338 (547)
Q Consensus 263 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~--~~~~GiDip~--v~~VI~~d 338 (547)
...++||++|...++.+++.|+ .+... ..-+++..++..+++.|+ +.-.||++|. .+++|||+|+ +..||...
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~ 524 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAG 524 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEc
Confidence 3579999999999999998886 33322 344455678999999999 8888999974 9999999996 67899999
Q ss_pred CCCCh-----------------------------hhhHhhhccccCCCCceEEEEEecC
Q 008956 339 FPTGV-----------------------------EDYVHRIGRTGRAGATGVAYTFFGD 368 (547)
Q Consensus 339 ~p~s~-----------------------------~~yiQriGR~gR~g~~g~~~~l~~~ 368 (547)
+|... ..+.|.+||+-|.-.+.-++++++.
T Consensus 525 lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 525 LPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 88521 1125999999998777667777754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=1.6e-18 Score=170.27 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=97.6
Q ss_pred cCccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhc--ccceEEEcCCCCHHHHHHHHHHhhcC-CCc-EEEE
Q 008956 244 LAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTR--QFGAAAIHGDKSQSERDYVLNQFRAG-RSP-VLVA 318 (547)
Q Consensus 244 ~~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~--~~~~~~ihg~~~~~~R~~~l~~F~~g-~~~-ILVa 318 (547)
.....|...|.+++... ..+.++||||+++..++.+++.|.+ .+.+..+||++++.+|+.+++.|+++ .++ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567888888888765 3567999999999999999999986 47889999999999999999999998 677 7899
Q ss_pred ccccccCCCCCCccEEEEcCCCCChhhhHhhhccccCCCCceEE--EEEecCC
Q 008956 319 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVA--YTFFGDQ 369 (547)
Q Consensus 319 T~~~~~GiDip~v~~VI~~d~p~s~~~yiQriGR~gR~g~~g~~--~~l~~~~ 369 (547)
|+++++|||++.+++||+||+||++..|+||+||++|.|+.+.+ |.|+...
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999999987755 5555543
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.94 E-value=4.1e-09 Score=114.94 Aligned_cols=146 Identities=21% Similarity=0.285 Sum_probs=90.9
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCchHH--HHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCce
Q 008956 42 TPIQAQSWPIALQSRDIVAIAKTGSGKT--LGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 119 (547)
Q Consensus 42 ~~~Q~~~i~~il~g~~vlv~a~TGsGKT--~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i 119 (547)
++.|+++++.++.++.+++.+++|+||| ++++++++..+.. ..+.++++++||..++.++.+.+.......++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-----~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l 225 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-----GERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-----SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-----cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999 4556665554321 12458999999999999998887765433222
Q ss_pred EEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEE
Q 008956 120 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 199 (547)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l 199 (547)
..... ...+. ....+ ..++-.+|+.. . +.........+++||||||+ |++ ...+..++..++...|++
T Consensus 226 ~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 226 TDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARVI 293 (608)
T ss_dssp CSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEE
T ss_pred CHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEE
Confidence 11000 00000 00000 11222233221 1 11112222378999999999 554 567788899999889999
Q ss_pred EEecc
Q 008956 200 MYTAT 204 (547)
Q Consensus 200 ~~SAT 204 (547)
++.-.
T Consensus 294 LvGD~ 298 (608)
T 1w36_D 294 FLGDR 298 (608)
T ss_dssp EEECT
T ss_pred EEcch
Confidence 87654
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.46 E-value=2.1e-06 Score=90.44 Aligned_cols=137 Identities=12% Similarity=0.086 Sum_probs=79.2
Q ss_pred HHHCCCCCCcHHHHHHHHHHhCC----C-cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHH
Q 008956 33 VHNAGFSSPTPIQAQSWPIALQS----R-DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQ 107 (547)
Q Consensus 33 l~~~g~~~~~~~Q~~~i~~il~g----~-~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~ 107 (547)
...+.|..|++-|++++..++.. + .++|.++.|+|||.+. ..++..+.... ...+++++||...+..+.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~-----~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG-----ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT-----CCCEEEEESSHHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC-----CceEEEecCcHHHHHHHH
Confidence 44567899999999999977542 3 7899999999999754 33344443311 137999999988877766
Q ss_pred HHHHHhccCCceEEEEecCCCCChhhHHHh---hCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHH
Q 008956 108 DEAVKFGKSSRISCTCLYGGAPKGPQLKDI---DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQ 184 (547)
Q Consensus 108 ~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~---~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~ 184 (547)
+.+. +.+..+. ..+... ......+.. .....+..+++|||||++.+. ...
T Consensus 92 ~~~~-------~~~~T~h------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~ 144 (459)
T 3upu_A 92 KLSG-------KEASTIH------SILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKL 144 (459)
T ss_dssp HHHS-------SCEEEHH------HHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHH
T ss_pred hhhc-------cchhhHH------HHhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHH
Confidence 5541 1111110 000000 000001100 112335578999999999642 445
Q ss_pred HHHHHHhCCCCceEEEEe
Q 008956 185 IRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 185 i~~i~~~l~~~~q~l~~S 202 (547)
+..++..++...+++++.
T Consensus 145 ~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 145 FKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHhccCCCEEEEEC
Confidence 666666676555555543
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.35 E-value=2.6e-06 Score=92.00 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=81.5
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 118 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~ 118 (547)
..+++.|.+++..++..+.+++.+++|+|||++.. .++..+.. .+.++++++||...+..+.+...
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~------~g~~Vl~~ApT~~Aa~~L~e~~~------- 253 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES------LGLEVGLCAPTGKAARRLGEVTG------- 253 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH------TTCCEEEEESSHHHHHHHHHHHT-------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh------cCCeEEEecCcHHHHHHhHhhhc-------
Confidence 36899999999999999999999999999997533 23333332 15689999999988887766442
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceE
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 198 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~ 198 (547)
.....+ ..+.. ... + . +.........+++||||||+.+ -...+..++..++...++
T Consensus 254 ~~a~Ti----------h~ll~---~~~-~--~----~~~~~~~~~~~dvlIIDEasml----~~~~~~~Ll~~~~~~~~l 309 (574)
T 3e1s_A 254 RTASTV----------HRLLG---YGP-Q--G----FRHNHLEPAPYDLLIVDEVSMM----GDALMLSLLAAVPPGARV 309 (574)
T ss_dssp SCEEEH----------HHHTT---EET-T--E----ESCSSSSCCSCSEEEECCGGGC----CHHHHHHHHTTSCTTCEE
T ss_pred ccHHHH----------HHHHc---CCc-c--h----hhhhhcccccCCEEEEcCccCC----CHHHHHHHHHhCcCCCEE
Confidence 111111 11100 000 0 0 0111223346789999999965 245677788888877777
Q ss_pred EEEec
Q 008956 199 LMYTA 203 (547)
Q Consensus 199 l~~SA 203 (547)
+++--
T Consensus 310 ilvGD 314 (574)
T 3e1s_A 310 LLVGD 314 (574)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 76543
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.33 E-value=5.7e-06 Score=90.52 Aligned_cols=69 Identities=22% Similarity=0.164 Sum_probs=54.5
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
..+++.|.+++..++...-++|++|+|+|||.+... ++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~-----~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-----GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS-----SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc-----CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 467999999999999888889999999999986443 33333321 2458999999999999998887654
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.30 E-value=2e-06 Score=94.61 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhCCCc-EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 39 SSPTPIQAQSWPIALQSRD-IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~-vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
..+.+-|.+|+..++..++ .||++|+|||||.+..-.+...+.. +.++|+++||..-++++.+.+....
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 3689999999999987664 6888999999998755444444433 5689999999999999988876543
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=9e-06 Score=91.08 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=54.7
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
..+++.|.+++..++...-++|++|+|+|||.+....+ ..+... .+.++|+++||..-+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~-----~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI-----HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH-----HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC-----CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 46789999999999987788999999999998654333 333221 1458999999999999999988775
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.15 E-value=1.9e-05 Score=88.34 Aligned_cols=69 Identities=22% Similarity=0.164 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
..+++.|.+++..++...-++|++|+|+|||.+..- ++..+... .+.++|+++||..-+.++.+.+.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~-----~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-----GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTT-----CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHc-----CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 357999999999999888889999999999986443 33333321 2458999999999999998887654
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.05 E-value=0.00011 Score=80.82 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
..+++.|.+++.. ....++|.|+.|||||.+.+--+...+..... ...++|++++|+..+.++.+.+.+...
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~---~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC---SPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC---CGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC---ChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 4789999999973 35679999999999998766555444433211 134899999999999999999887643
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.82 E-value=0.00015 Score=71.39 Aligned_cols=121 Identities=10% Similarity=0.064 Sum_probs=85.5
Q ss_pred CccchHHHHHHHHHhc-CCCCeEEEEcCChHHHHHHHHHHhc-ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcccc
Q 008956 245 APMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVA 322 (547)
Q Consensus 245 ~~~~k~~~l~~~l~~~-~~~~k~IVF~~s~~~~~~l~~~L~~-~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~ 322 (547)
....|...|..++... ..+.+++||++..+..+.+.++|.. .+.+..+.|.....+++ -.+..+.|.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCC
Confidence 3567777777777654 4567999999999999999999984 48888899885543221 124455565557666
Q ss_pred ccCCC-----CCCccEEEEcCCCCChhhh-HhhhccccCCC----CceEEEEEecCCC
Q 008956 323 ARGLD-----IKDIRVVVNYDFPTGVEDY-VHRIGRTGRAG----ATGVAYTFFGDQD 370 (547)
Q Consensus 323 ~~GiD-----ip~v~~VI~~d~p~s~~~y-iQriGR~gR~g----~~g~~~~l~~~~~ 370 (547)
.-|+| +..+++||.||.-|++..- +|++-|+.|.+ ++-.+|.|++...
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 66776 6789999999999999885 99999999973 3456777776544
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.32 E-value=0.0023 Score=65.01 Aligned_cols=70 Identities=14% Similarity=-0.011 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
.|+|+|...+..+...+.+++..+-+.|||.+....++..+.. ..+..+++++|++.-|..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-----~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-----NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-----SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 7899999999877555668888999999998765554443322 125589999999999988887777654
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.28 E-value=0.00098 Score=60.15 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHh---------CCCcEEEEcCCCchHHHHHH
Q 008956 42 TPIQAQSWPIAL---------QSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 42 ~~~Q~~~i~~il---------~g~~vlv~a~TGsGKT~~~l 73 (547)
.+.|.+++..+. .++.+++.+|+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 455666665543 36788999999999997543
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.14 E-value=0.0013 Score=67.71 Aligned_cols=107 Identities=22% Similarity=0.166 Sum_probs=63.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 136 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 136 (547)
-.++.++.|+|||....- .+ . ....+|++||++++..|.+.+.+....
T Consensus 163 v~~I~G~aGsGKTt~I~~----~~-~-------~~~~lVlTpT~~aa~~l~~kl~~~~~~-------------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS----RV-N-------FEEDLILVPGRQAAEMIRRRANASGII-------------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH----HC-C-------TTTCEEEESCHHHHHHHHHHHTTTSCC--------------------
T ss_pred EEEEEcCCCCCHHHHHHH----Hh-c-------cCCeEEEeCCHHHHHHHHHHhhhcCcc--------------------
Confidence 357789999999975321 11 1 125699999999999988877433110
Q ss_pred hhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 137 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 137 ~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
.....-|.|.++++- .........+++||||||- |++. ..+..++...+. .+++++--+
T Consensus 211 --~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 --VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp --CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred --ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCH---HHHHHHHHhCCC-CEEEEecCc
Confidence 011344777776532 2212222347899999998 4443 344445555544 556655443
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.00 E-value=0.007 Score=65.50 Aligned_cols=72 Identities=14% Similarity=-0.006 Sum_probs=55.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
.|+|+|+..+..+...+.+++..+-++|||.+....++..+.. . .+..+++++|+...+..+.+.++.+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~---~--~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---N--KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT---S--SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh---C--CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 5899999999877556778899999999998765444433332 1 2458999999999999988888776543
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.96 E-value=0.00081 Score=61.55 Aligned_cols=39 Identities=15% Similarity=-0.006 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 100 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr 100 (547)
++-.++.+++|+|||++.+-.+...... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~-------g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA-------KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEecc
Confidence 3446778999999998766554444433 56899998873
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.94 E-value=0.0017 Score=59.01 Aligned_cols=39 Identities=26% Similarity=0.063 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 100 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr 100 (547)
++-.++.+++|+|||+.++-.+...... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~-------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG-------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeecc
Confidence 4557888999999998765444433332 45889998873
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.74 E-value=0.001 Score=61.61 Aligned_cols=38 Identities=16% Similarity=-0.045 Sum_probs=27.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 100 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr 100 (547)
+-.++.+++|+|||++++-.+..+... +.+++|+.|..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~-------g~kVli~k~~~ 66 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA-------KQHAIVFKPCI 66 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEECC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEecc
Confidence 335678999999998776665555444 66899999975
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.66 E-value=0.0022 Score=60.18 Aligned_cols=90 Identities=11% Similarity=0.013 Sum_probs=51.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 134 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 134 (547)
+.-+++.+++|+|||++.+-.+...... +.+++++.|...- . . ..++....++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~-------g~kVli~~~~~d~--r-~--~~~i~srlG~~-------------- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA-------DVKYLVFKPKIDT--R-S--IRNIQSRTGTS-------------- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEEECCCG--G-G--CSSCCCCCCCS--------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc-------CCEEEEEEeccCc--h-H--HHHHHHhcCCC--------------
Confidence 4456778999999998766555444433 5588888775310 0 0 00111111110
Q ss_pred HHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccc
Q 008956 135 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 176 (547)
Q Consensus 135 ~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~l 176 (547)
-..+.+.+...+...+... ..-.++++|||||++.+
T Consensus 66 -----~~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 -----LPSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp -----SCCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGS
T ss_pred -----ccccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccC
Confidence 0123455666666665532 22345899999999964
No 111
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.66 E-value=0.0042 Score=68.97 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
..+++-|++++.. ....++|.|..|||||.+..--+...+..... ....+|+|+.|+..|.++.+.+.++.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~---~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV---APWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC---CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4789999999975 35689999999999998765555444443211 23589999999999999998887764
No 112
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.031 Score=55.20 Aligned_cols=20 Identities=10% Similarity=-0.238 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~ 74 (547)
+.++++.+|+|+|||++.-.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~ 64 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND 64 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999976543
No 113
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.41 E-value=0.0066 Score=65.72 Aligned_cols=112 Identities=22% Similarity=0.252 Sum_probs=73.8
Q ss_pred CCcHHHHHHHHHHhC--CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC
Q 008956 40 SPTPIQAQSWPIALQ--SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 117 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~--g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~ 117 (547)
.+|..|.+++..++. ....++.|+-|.|||.+.-+.+ ..+.. .++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~~---------~~~vtAP~~~a~~~l~~~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIAG---------RAIVTAPAKASTDVLAQFAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSSS---------CEEEECSSCCSCHHHHHHHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHHh---------CcEEECCCHHHHHHHHHHhhC-----
Confidence 689999999998887 3446888999999996544332 33221 469999998766544433221
Q ss_pred ceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHhCCCCce
Q 008956 118 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 197 (547)
Q Consensus 118 ~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q 197 (547)
.|-+..|+.+.. ...+.++||||||=.+ -.+.+..++...+
T Consensus 240 ------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~~~---- 280 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSRFP---- 280 (671)
T ss_dssp ------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTTSS----
T ss_pred ------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhhCC----
Confidence 133345655431 2345889999999965 4677777776443
Q ss_pred EEEEeccC
Q 008956 198 TLMYTATW 205 (547)
Q Consensus 198 ~l~~SAT~ 205 (547)
.++||.|.
T Consensus 281 ~v~~~tTv 288 (671)
T 2zpa_A 281 RTLLTTTV 288 (671)
T ss_dssp EEEEEEEB
T ss_pred eEEEEecC
Confidence 46677774
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.38 E-value=0.0015 Score=57.17 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCchHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~ 71 (547)
.++.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999964
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.15 E-value=0.0042 Score=58.10 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=28.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 100 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr 100 (547)
++-.++.+++|+|||.+.+-.+..+... +.+++++-|.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~-------g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA-------QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT-------TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEeecC
Confidence 4456778999999998776655555444 66899998864
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.11 E-value=0.019 Score=56.87 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
...+++.+|+|+|||..+-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3679999999999997543
No 117
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.07 E-value=0.0088 Score=65.81 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=54.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhcc
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 115 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~ 115 (547)
.+++-|++++... ...++|.|..|||||.+.+--+...+..... ....+|+|+.|+..+.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---QARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC---CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5789999999753 6788999999999998765555444443211 135899999999999999999887654
No 118
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.07 E-value=0.029 Score=51.19 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
+.+++.+|+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999997543
No 119
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.03 E-value=0.026 Score=58.23 Aligned_cols=54 Identities=13% Similarity=0.261 Sum_probs=37.5
Q ss_pred CCeeEEEEecccccc---cCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh
Q 008956 163 NQVSYLVLDEADRML---DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll---~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~ 216 (547)
.++++||||++-++- +..+...+..+...+.+..-++.++|+...+....+..+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 578899999998653 333556677777777667777888888765555555444
No 120
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.00 E-value=0.041 Score=55.42 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
...+++.+|+|+|||..+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 121
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.98 E-value=0.029 Score=49.91 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
...+++.+|+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4579999999999997544
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.97 E-value=0.034 Score=53.51 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
+.+++.+|+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 468999999999997544
No 123
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.93 E-value=0.004 Score=57.56 Aligned_cols=39 Identities=15% Similarity=-0.003 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 100 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr 100 (547)
|.-.++.+++|+|||+..+-.+..+... +.+++|+.|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~-------g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA-------KQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-------TCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc-------CCceEEEEecc
Confidence 3446788999999997655444333333 55899999864
No 124
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.93 E-value=0.026 Score=51.35 Aligned_cols=140 Identities=12% Similarity=0.114 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHH-HHHHHHHHHHHhccCCceEEEEecCCCCChh-
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE-LATQIQDEAVKFGKSSRISCTCLYGGAPKGP- 132 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~-L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~- 132 (547)
...+++...+|.|||.+++-.++..+.. +.+|+|+.=.+. ...--.+.+..+ .+.+...--+-....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~-------G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH-------GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT-------TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCC
Confidence 3478888999999999998888887766 778888832221 000001112222 122221111111111
Q ss_pred hHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCc--HHHHHHHHHhCCCCceEEEEeccCcHHHH
Q 008956 133 QLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF--EPQIRKIVKEVPARRQTLMYTATWPREVR 210 (547)
Q Consensus 133 ~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~--~~~i~~i~~~l~~~~q~l~~SAT~~~~~~ 210 (547)
....-...+ -..|..... .+.-..+++|||||+--.+..++ .+.+..++...|....+|+++--+|+++.
T Consensus 97 ~~~~~~~~a------~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 97 NREADTAAC------MAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp GHHHHHHHH------HHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CcHHHHHHH------HHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 000000000 111111111 23346799999999976655553 56677778888888888888888888777
Q ss_pred HHH
Q 008956 211 KIA 213 (547)
Q Consensus 211 ~~~ 213 (547)
+++
T Consensus 169 e~A 171 (196)
T 1g5t_A 169 DLA 171 (196)
T ss_dssp HHC
T ss_pred HhC
Confidence 665
No 125
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.082 Score=48.27 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=26.3
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
....+|||||+|.+... ....+..+++..+....++++|..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 45679999999987432 234556666666555655555443
No 126
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.88 E-value=0.019 Score=57.27 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEcCCCchHHHHHHH
Q 008956 41 PTPIQAQSWPIAL----QSR---DIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 41 ~~~~Q~~~i~~il----~g~---~vlv~a~TGsGKT~~~l~ 74 (547)
++|||.+++..+. +++ .+++.+|+|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 4688888876554 333 388899999999976554
No 127
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.70 E-value=0.0052 Score=55.95 Aligned_cols=38 Identities=16% Similarity=-0.021 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCc
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 99 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Pt 99 (547)
++-.++.+++|+|||...+-.+-..... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEccc
Confidence 4556778999999996544444444333 4589999886
No 128
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.63 E-value=0.16 Score=45.10 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+++.+++|+|||..+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CceEEECCCCCCHHHHHH
Confidence 579999999999997543
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.37 E-value=0.061 Score=54.28 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
+.+++.+|+|+|||..+.
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 468999999999997543
No 130
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.24 E-value=0.049 Score=52.58 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=32.6
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHH-HHHHHHH--HhCCCcEEEEcCCCchHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPI-QAQSWPI--ALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~-Q~~~i~~--il~g~~vlv~a~TGsGKT~~~ 72 (547)
|...|+++.-.+...+.|...= . .+. ..+.+.. +...+.+++.+|+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVV--E-LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHT--H-HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHH--H-HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3456888877777777776321 0 111 1112222 134567999999999999754
No 131
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.18 E-value=0.061 Score=53.10 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=26.0
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
....+|||||+|.+........+..+++..+...++++.+..
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 367899999999875122344555556655555556654433
No 132
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.16 E-value=0.032 Score=52.03 Aligned_cols=20 Identities=20% Similarity=0.052 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCchHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l 73 (547)
.++.+++.+|+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999997543
No 133
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.07 E-value=0.033 Score=65.48 Aligned_cols=73 Identities=22% Similarity=0.135 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 39 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 39 ~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
.++|+-|.++|..- +++++|.|..|||||.+.+--++..+.... .+-...++|+|++|+..+..+.+.+....
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE-NPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS-SCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC-CCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 36899999999764 789999999999999876655555554422 11124589999999999999988887643
No 134
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.06 E-value=0.064 Score=46.19 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=17.7
Q ss_pred HhCCCcEEEEcCCCchHHHHHH
Q 008956 52 ALQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 52 il~g~~vlv~a~TGsGKT~~~l 73 (547)
+....++++.+|+|+|||..+-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3456789999999999997543
No 135
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.04 E-value=0.12 Score=51.10 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=31.7
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----CCCcEEEEcCCCchHHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIAL-----QSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il-----~g~~vlv~a~TGsGKT~~~l 73 (547)
|...|+++.-.+.+.+.|...=. .|. ..+.+. ..+.+++.+|+|+|||+.+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 44578888777777777763210 111 011111 13569999999999997543
No 136
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.00 E-value=0.019 Score=56.67 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
++.+++.+|+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997544
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.86 E-value=0.038 Score=55.84 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHH
Q 008956 57 DIVAIAKTGSGKTLGY 72 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~ 72 (547)
.+++.+|+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999754
No 138
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.81 E-value=0.1 Score=53.84 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=31.7
Q ss_pred CeeEEEEecccccccC-CcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh
Q 008956 164 QVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~ 216 (547)
.+++||||.+=++... .....+..+.....+..-++.+.||...+....+..+
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f 235 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAF 235 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHH
Confidence 4678999988654321 1334455555555556667778888765555555444
No 139
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.77 E-value=0.1 Score=54.14 Aligned_cols=44 Identities=16% Similarity=0.400 Sum_probs=25.3
Q ss_pred CeeEEEEecccccccC-CcHHHHHHHHHhC-CCCceEEEEeccCcH
Q 008956 164 QVSYLVLDEADRMLDM-GFEPQIRKIVKEV-PARRQTLMYTATWPR 207 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~-g~~~~i~~i~~~l-~~~~q~l~~SAT~~~ 207 (547)
+.++|+|||+|.+... .....+..+++.+ ....++|+.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 4678999999998753 1233344444443 334556665544443
No 140
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.75 E-value=0.1 Score=52.40 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
+..+++.+|+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 141
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.74 E-value=0.087 Score=49.37 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 113 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~ 113 (547)
.+.-+++.+++|+|||..++..+...... +..++++.-. +...++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-------~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM-------GEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT-------TCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEcc-CCHHHHHHHHHHc
Confidence 45678889999999997655433333322 3467777643 2345555555433
No 142
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.60 E-value=0.074 Score=51.94 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+++.+|+|+|||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997654
No 143
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.51 E-value=0.23 Score=48.52 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=31.7
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHH-HHH-HH-HhCCCcEEEEcCCCchHHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQA-QSW-PI-ALQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i-~~-il~g~~vlv~a~TGsGKT~~~l 73 (547)
|-..|+++.-.+.+.+.|...=. +|... +.+ .. +...+.+++.+|+|+|||+.+-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 34578888767777666663200 11100 011 11 2335679999999999997543
No 144
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.28 Score=49.78 Aligned_cols=55 Identities=20% Similarity=0.333 Sum_probs=32.7
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHH--HhCCCcEEEEcCCCchHHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQA-QSWPI--ALQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~--il~g~~vlv~a~TGsGKT~~~l 73 (547)
|-.+|++.+=-++..+.|...= .+|... +.+.. +.-.+.+|+.+|+|+|||+.+-
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v---~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVI---ELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHT---HHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHH
Confidence 4567888876667777766331 112111 11111 1224789999999999997543
No 145
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.12 Score=53.11 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=35.4
Q ss_pred CCccCCccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 008956 15 PPFMSFDATGFPPELLREVHNA---GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 15 ~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~ 72 (547)
.|..+|++.+--++..+.|... -+..|--++... +.-.+.+|+.+|+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHH
Confidence 4667899999888888877632 111222222211 112478999999999999754
No 146
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.20 E-value=0.7 Score=43.49 Aligned_cols=53 Identities=25% Similarity=0.170 Sum_probs=28.3
Q ss_pred cCCccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHH
Q 008956 18 MSFDATGFPPELLREVHNAG--FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l 73 (547)
..|+++.-.+.+.+.+...- +..+..+... .+...+.+++.+|+|+|||+.+-
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHHH
Confidence 46777666666666665320 0111111110 01234678999999999997543
No 147
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.11 E-value=0.13 Score=57.14 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=64.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-ccccCCCCCCccEEE
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAARGLDIKDIRVVV 335 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~~~GiDip~v~~VI 335 (547)
.+.+++|.++++..+..+++.+.+. +.+..+||+++..++...++.+.+|..+|+|+|. .+...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 4579999999999998888877643 6789999999999999999999999999999995 456678888888887
Q ss_pred EcC
Q 008956 336 NYD 338 (547)
Q Consensus 336 ~~d 338 (547)
.-.
T Consensus 496 IDE 498 (780)
T 1gm5_A 496 IDE 498 (780)
T ss_dssp EES
T ss_pred ecc
Confidence 533
No 148
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.98 E-value=0.28 Score=48.57 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=26.2
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEec
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 203 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SA 203 (547)
....+|+|||+|.+... ....+..+++..+....+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35689999999987532 23456666676666655665543
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.98 E-value=0.18 Score=49.29 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEec
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 203 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SA 203 (547)
....+|||||+|.+... ....+..+++..+....+++.+.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45789999999987432 23445566666665555555443
No 150
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.91 E-value=0.059 Score=46.31 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=17.2
Q ss_pred HHhCCCcEEEEcCCCchHHHH
Q 008956 51 IALQSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 51 ~il~g~~vlv~a~TGsGKT~~ 71 (547)
.+....++++.+++|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 345567899999999999964
No 151
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.90 E-value=0.2 Score=46.25 Aligned_cols=21 Identities=33% Similarity=0.282 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCchHHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~ 74 (547)
.+.-+++.+++|+|||+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 456788899999999975443
No 152
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.81 E-value=0.43 Score=47.13 Aligned_cols=18 Identities=28% Similarity=0.154 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+++.+|+|+|||+.+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999997543
No 153
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.76 E-value=0.25 Score=49.12 Aligned_cols=43 Identities=12% Similarity=0.296 Sum_probs=29.5
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEeccCc
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWP 206 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT~~ 206 (547)
.+..+|||||+|. ++......+.++++..+....+|+.|..+.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 4678999999998 444445667777777776666666655443
No 154
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.72 E-value=0.58 Score=42.95 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=22.1
Q ss_pred CeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEec
Q 008956 164 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 203 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SA 203 (547)
...+|||||+|.+... ....+..++...+....+|+.|.
T Consensus 126 ~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEeC
Confidence 4579999999986322 23334444444444444454443
No 155
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.64 E-value=0.52 Score=47.05 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
+.+++.+|+|+|||..+-
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 579999999999997544
No 156
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.09 E-value=0.79 Score=45.09 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=31.1
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhC-----CCcEEEEcCCCchHHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQ-----SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~-----g~~vlv~a~TGsGKT~~~l 73 (547)
|-..|+++.--+.+.+.|...=. .|.+ .+.+.. .+.+++.+|+|+|||+.+-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 34578888777777776653200 0110 012222 2679999999999997543
No 157
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.78 E-value=0.34 Score=49.32 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=63.5
Q ss_pred cCCCCeEEEEcCChHHHHHHHHHHhc----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccc-c----ccCCCCCC
Q 008956 260 QEPGSKIIVFCSTKKMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-A----ARGLDIKD 330 (547)
Q Consensus 260 ~~~~~k~IVF~~s~~~~~~l~~~L~~----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~-~----~~GiDip~ 330 (547)
...+.++||.++++..+..+++.+++ .+.+..++|+.+..++...++.+..+..+|+|+|.- + .. +++..
T Consensus 61 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~ 139 (414)
T 3oiy_A 61 ARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKR 139 (414)
T ss_dssp HTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCC
T ss_pred hcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hcccc
Confidence 35567999999999999999998886 468899999999999888888999999999999942 2 22 55567
Q ss_pred ccEEEEcCC
Q 008956 331 IRVVVNYDF 339 (547)
Q Consensus 331 v~~VI~~d~ 339 (547)
+.+||.-..
T Consensus 140 ~~~iViDEa 148 (414)
T 3oiy_A 140 FDFVFVDDV 148 (414)
T ss_dssp CSEEEESCH
T ss_pred ccEEEEeCh
Confidence 788775443
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.71 E-value=0.38 Score=48.02 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=23.2
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
....+|||||+|.+... ....+.+.++..+....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 45689999999987432 2334455555554444444443
No 159
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.68 E-value=0.22 Score=50.55 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
.+.+|+.+|+|+|||+.+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997543
No 160
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.65 E-value=3.3 Score=40.45 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=24.2
Q ss_pred eeEEEEeccccccc---CCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 165 VSYLVLDEADRMLD---MGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 165 ~~~lVlDEaH~ll~---~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
--+|||||+|.+.+ ..+...+..+....+ ... ++++++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~i~~g~ 178 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIK-FIMSGS 178 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEE-EEEEES
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeE-EEEEcC
Confidence 45899999999864 346666776666543 333 444444
No 161
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.62 E-value=0.63 Score=48.00 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=33.5
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHH--HhCCCcEEEEcCCCchHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQA-QSWPI--ALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~--il~g~~vlv~a~TGsGKT~~~ 72 (547)
|-.+|++.+--+++.+.|...=. .|... +.+.. +.--+.+|+.+|+|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 45688888877787777764310 11111 11111 123478999999999999754
No 162
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.60 E-value=0.38 Score=49.47 Aligned_cols=55 Identities=24% Similarity=0.305 Sum_probs=32.0
Q ss_pred CccCCccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNAG---FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l 73 (547)
|-.+|++.+--++..+.|...= +..|--++... +.--+.+|+.+|+|+|||+.+-
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHHH
Confidence 5567888886667766665320 11111111110 1123789999999999997543
No 163
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.49 E-value=0.55 Score=47.96 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=32.8
Q ss_pred CccCCccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNA---GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l 73 (547)
|-.+|++.+=-+++.+.|... -+..|--++... +--.+.+|+.+|+|+|||+.+-
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHHHH
Confidence 557898887666666666532 111222222111 1123779999999999997543
No 164
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.47 E-value=0.28 Score=47.88 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=25.0
Q ss_pred CeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEec
Q 008956 164 QVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTA 203 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SA 203 (547)
...+|||||+|.+... ....+..+++..+....+++.|.
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEeC
Confidence 4789999999987542 23345556666665665665553
No 165
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.37 E-value=0.94 Score=45.26 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
.+.+++.+|+|+|||+.+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 166
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.28 E-value=0.54 Score=48.21 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=31.6
Q ss_pred CccCCccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNA---GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l 73 (547)
|-.+|++.+=-+.+.+.|... -+..|--++... +.-.+.+|+.+|+|+|||+.+-
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHHH
Confidence 456788887666666666532 011111111110 1224679999999999997543
No 167
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.23 E-value=0.71 Score=45.12 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=25.3
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
....++||||||.|.... ...+.+.++..++...+++.+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 467899999999985432 344556666655555555544
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.18 E-value=0.22 Score=50.63 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=14.1
Q ss_pred CcEEE--EcCCCchHHHHHH
Q 008956 56 RDIVA--IAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv--~a~TGsGKT~~~l 73 (547)
..+++ .+++|+|||..+.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 45777 8999999997543
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.17 E-value=0.12 Score=53.67 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+|+.+|+|+|||+.+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 468999999999997543
No 170
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.17 E-value=0.63 Score=46.06 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=26.8
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
....++|+||+|.|... ....+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987543 3445667777777666666554
No 171
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.13 E-value=0.22 Score=47.36 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.5
Q ss_pred hCCCcEEEEcCCCchHHHHH
Q 008956 53 LQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~~ 72 (547)
.....+++.+++|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 34678999999999999744
No 172
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.09 E-value=0.31 Score=49.05 Aligned_cols=45 Identities=24% Similarity=0.107 Sum_probs=28.7
Q ss_pred HHHHHhC------CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCc
Q 008956 48 SWPIALQ------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 99 (547)
Q Consensus 48 ~i~~il~------g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Pt 99 (547)
.+..++. +.-++|.+++|+|||..++-.+...... +.+++|+..-
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESS
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-------CCeEEEEECC
Confidence 4555554 3567888999999997655444333322 3467777654
No 173
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.04 E-value=0.085 Score=52.85 Aligned_cols=38 Identities=21% Similarity=0.074 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCc
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 99 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Pt 99 (547)
+.-+++.+++|+|||..++..+...... +.+++++.-.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECC
Confidence 4568889999999998655544443322 4467777643
No 174
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.94 E-value=0.78 Score=45.83 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
+.+|+.+|+|+|||+.+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999997544
No 175
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.87 E-value=0.41 Score=49.66 Aligned_cols=39 Identities=23% Similarity=0.118 Sum_probs=24.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
.+.-+++.+++|+|||..++..+...... .+.+++|++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~------~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK------TNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH------SSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEEEC
Confidence 34567888999999997655444433322 1346777764
No 176
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.85 E-value=0.28 Score=50.75 Aligned_cols=38 Identities=21% Similarity=-0.001 Sum_probs=24.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
+.-+++.+++|+|||..++-.+...... .+.++++++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~------~g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK------EGVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT------TCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEEC
Confidence 4557888999999997555444433321 1346777765
No 177
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.67 E-value=0.13 Score=62.45 Aligned_cols=44 Identities=25% Similarity=0.159 Sum_probs=32.0
Q ss_pred HHHHhC------CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCc
Q 008956 49 WPIALQ------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPT 99 (547)
Q Consensus 49 i~~il~------g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Pt 99 (547)
+..++. ++.+++.+|+|+|||..++..+...... +.+++|+...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~-------G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEEcc
Confidence 555555 6789999999999998766554444333 5688888875
No 178
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.52 E-value=0.71 Score=48.18 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=39.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccC
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 116 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~ 116 (547)
.+....+.+-|||+||++... ++... +..+|||+|+...|.|++++++.+...
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~~---------~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAERH---------AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHHS---------SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHHh---------CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 345688899999999964221 11111 347899999999999999999998754
No 179
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.40 E-value=2 Score=44.26 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
.+.+|+.+|+|+|||+.+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3679999999999997543
No 180
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.32 E-value=0.4 Score=44.59 Aligned_cols=22 Identities=14% Similarity=-0.082 Sum_probs=16.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~ 75 (547)
.+.-+++.+|+|+|||..+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 4567888999999999755443
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.20 E-value=0.49 Score=49.98 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=25.7
Q ss_pred CCeeEEEEecccccccCC--cHHHHHHHHHhCCCCceEEEEeccC
Q 008956 163 NQVSYLVLDEADRMLDMG--FEPQIRKIVKEVPARRQTLMYTATW 205 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g--~~~~i~~i~~~l~~~~q~l~~SAT~ 205 (547)
....+|||||+|.+.... ....+..+++.. ...+++++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 356789999999886532 224455555542 34577777663
No 182
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.01 E-value=0.18 Score=50.51 Aligned_cols=46 Identities=22% Similarity=0.107 Sum_probs=28.2
Q ss_pred HHHHHhC------CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcH
Q 008956 48 SWPIALQ------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 100 (547)
Q Consensus 48 ~i~~il~------g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr 100 (547)
.+..++. +.-++|.+|+|+|||+.++..+...... +.+++++....
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~-------gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-------GGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEeccc
Confidence 3455554 3567888999999997544333322221 44778876643
No 183
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.92 E-value=0.14 Score=48.09 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=26.4
Q ss_pred CCeeEEEEeccccccc-----CCcHHHHHHHHHhCCCCceEEEEeccC
Q 008956 163 NQVSYLVLDEADRMLD-----MGFEPQIRKIVKEVPARRQTLMYTATW 205 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~-----~g~~~~i~~i~~~l~~~~q~l~~SAT~ 205 (547)
.+.++||+||.-.+++ ......+..++..+.....+++++.-.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678999999998875 333444666666554333355555443
No 184
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.62 E-value=0.22 Score=49.43 Aligned_cols=49 Identities=22% Similarity=0.099 Sum_probs=30.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
.+.-+++.+++|+|||..++-.+...... +.+++|++.- .-..|+...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~-------g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALND-------DRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-------TCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCC-CCHHHHHHHH
Confidence 44567888999999997655444433332 4578888653 3334444444
No 185
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.61 E-value=0.94 Score=52.70 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=64.9
Q ss_pred cCCCCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEc-cccccCCCCCCccE
Q 008956 260 QEPGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT-DVAARGLDIKDIRV 333 (547)
Q Consensus 260 ~~~~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT-~~~~~GiDip~v~~ 333 (547)
...+.+++|.|+|+..+..+++.+.+. +.+..+++..+..++...++.+..|.++|+|+| ..+...+.+.++.+
T Consensus 649 ~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~l 728 (1151)
T 2eyq_A 649 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 728 (1151)
T ss_dssp HTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEE
T ss_pred HHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccce
Confidence 345679999999999999888888753 457889999999999999999999999999999 56666788888888
Q ss_pred EEE
Q 008956 334 VVN 336 (547)
Q Consensus 334 VI~ 336 (547)
||.
T Consensus 729 vIi 731 (1151)
T 2eyq_A 729 LIV 731 (1151)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 186
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.21 E-value=0.36 Score=50.62 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=26.5
Q ss_pred eeEEEEecccccccCC----------cHHHHHHHHHhCCCCceEEEEeccCc
Q 008956 165 VSYLVLDEADRMLDMG----------FEPQIRKIVKEVPARRQTLMYTATWP 206 (547)
Q Consensus 165 ~~~lVlDEaH~ll~~g----------~~~~i~~i~~~l~~~~q~l~~SAT~~ 206 (547)
..+|+|||+|.+.... ....+..+++.+.....++++.||-.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 4689999999876521 12334445555555666777777743
No 187
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.20 E-value=0.95 Score=41.21 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=23.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
.+.-+++.+++|+|||+.+...+. .. +..++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~-------~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LS-------GKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HH-------CSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---Hc-------CCcEEEEEC
Confidence 345678899999999975544333 11 346777753
No 188
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.04 E-value=1.4 Score=43.05 Aligned_cols=51 Identities=14% Similarity=-0.048 Sum_probs=30.8
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 008956 53 LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAV 111 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~ 111 (547)
..|.-+++.+++|+|||..++-.+...... +.++++++.- +-..|+...+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT-------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEECC-CCHHHHHHHHH
Confidence 345668889999999997555444443322 3478888743 33344444443
No 189
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.96 E-value=1.2 Score=43.32 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
...+++.+|+|+|||..+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3679999999999997543
No 190
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.91 E-value=2.2 Score=41.34 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=26.1
Q ss_pred CCeeEEEEecccccc-cCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHH
Q 008956 163 NQVSYLVLDEADRML-DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIA 213 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll-~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~ 213 (547)
.++++|||||+-.+. +......+..+...+.+..-++.+.++...+..+.+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~ 230 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHH
Confidence 467899999995432 111223344444444444435556666443333333
No 191
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.62 E-value=0.22 Score=49.89 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
++-+++.+++|+|||..++..+...... +.+++|+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeC
Confidence 4568888999999998766544443332 446787776
No 192
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.56 E-value=0.54 Score=45.65 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
.+++.+|+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997543
No 193
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.32 E-value=1.4 Score=42.83 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=23.9
Q ss_pred CCeeEEEEecccccccCCcHHHHHHHHHhCC---CCceEEEEeccCc
Q 008956 163 NQVSYLVLDEADRMLDMGFEPQIRKIVKEVP---ARRQTLMYTATWP 206 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~---~~~q~l~~SAT~~ 206 (547)
.++++||||.+-+.. .-...+..+...+. +...++.+.+|..
T Consensus 181 ~~~dlvIiDT~G~~~--~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 181 SEYDHVFVDTAGRNF--KDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp GGSSEEEEECCCCCT--TSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred cCCCEEEEeCCCCCh--hhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 567899999776432 12344444444443 2233667766654
No 194
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.09 E-value=0.98 Score=43.74 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
+.+++.+|+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468888999999997543
No 195
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.04 E-value=0.4 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=17.2
Q ss_pred HhCCCcEEEEcCCCchHHHHHHH
Q 008956 52 ALQSRDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 52 il~g~~vlv~a~TGsGKT~~~l~ 74 (547)
+..|.-+++.+++|+|||+.+..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 34566788899999999975443
No 196
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.85 E-value=0.4 Score=49.61 Aligned_cols=49 Identities=14% Similarity=-0.056 Sum_probs=30.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
.+.-+++.|++|+|||..++-.+...... +.+++|++.- +-..|+...+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~-------g~~vl~fSlE-ms~~ql~~R~ 244 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRL 244 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT-------TCEEEEECSS-SCTTHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc-------CCEEEEEECC-CCHHHHHHHH
Confidence 34567888999999997655544444332 4578888753 2333444443
No 197
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.77 E-value=0.82 Score=52.90 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=63.9
Q ss_pred cCCCCeEEEEcCChHHHHHHHHHHhc----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-cc----ccCCCCCC
Q 008956 260 QEPGSKIIVFCSTKKMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VA----ARGLDIKD 330 (547)
Q Consensus 260 ~~~~~k~IVF~~s~~~~~~l~~~L~~----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~----~~GiDip~ 330 (547)
...+.++||.++++..+..+++.|++ .+.+..+||+++..++...++.+..+..+|||+|. .+ .. +++.+
T Consensus 118 ~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~ 196 (1104)
T 4ddu_A 118 ARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKR 196 (1104)
T ss_dssp HTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSC
T ss_pred HhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccC
Confidence 35567999999999999999999987 25789999999998888889999999999999994 22 22 45667
Q ss_pred ccEEEEcCC
Q 008956 331 IRVVVNYDF 339 (547)
Q Consensus 331 v~~VI~~d~ 339 (547)
+.+||.-..
T Consensus 197 l~~lViDEa 205 (1104)
T 4ddu_A 197 FDFVFVDDV 205 (1104)
T ss_dssp CSEEEESCH
T ss_pred cCEEEEeCC
Confidence 888875443
No 198
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.37 E-value=0.8 Score=51.59 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
.++++++|+|+|||..+-
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 579999999999997544
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.08 E-value=0.65 Score=45.74 Aligned_cols=58 Identities=14% Similarity=0.025 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH-HHHHHHHHHHh
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL-ATQIQDEAVKF 113 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L-~~Q~~~~~~~~ 113 (547)
+.-+++.+++|+|||..++..+...... ......+.+++++.-...+ ..++.+.+..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~-~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLP-PEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSC-GGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcc-cccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999997655433322111 0000113478888754322 34444444443
No 200
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.83 E-value=0.42 Score=57.21 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=72.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 135 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 135 (547)
+-+.+.+|.|||||+.++-.+...... +..++++.+--+|-... +++++...
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~-------g~~~~~i~~e~~~~~~~---~~~~Gv~~------------------ 1483 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIY---ARKLGVDI------------------ 1483 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTTSCCCHHH---HHHTTCCG------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc-------CCeEEEEecCCCCCHHH---HHHcCCCH------------------
Confidence 568889999999998766554444333 66889988866665543 55665432
Q ss_pred HhhCCCcEEEECcHHHHHHHh--cCCcCCCCeeEEEEecccccccCC-----------------cHHHHHHHHHhCCCCc
Q 008956 136 DIDRGVDIVVATPGRLNDILE--MRRISLNQVSYLVLDEADRMLDMG-----------------FEPQIRKIVKEVPARR 196 (547)
Q Consensus 136 ~~~~~~~IlV~Tp~~L~~~l~--~~~~~l~~~~~lVlDEaH~ll~~g-----------------~~~~i~~i~~~l~~~~ 196 (547)
.+++|+.|+.-...|+ ...+.-..+++||||.+-.+.... +...++++...+.+..
T Consensus 1484 -----~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~ 1558 (1706)
T 3cmw_A 1484 -----DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1558 (1706)
T ss_dssp -----GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 1477777755433332 112223457899999998766421 2233555555555555
Q ss_pred eEEEEeccCcHHH
Q 008956 197 QTLMYTATWPREV 209 (547)
Q Consensus 197 q~l~~SAT~~~~~ 209 (547)
-+++|...+...+
T Consensus 1559 ~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1559 TLLIFINQIRMKI 1571 (1706)
T ss_dssp CEEEEEECBC---
T ss_pred cEEEEeecccccc
Confidence 5677776654433
No 201
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.07 E-value=0.79 Score=48.73 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
+..+++.+|+|+|||+.+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999754
No 202
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.93 E-value=0.54 Score=46.19 Aligned_cols=22 Identities=23% Similarity=-0.032 Sum_probs=16.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGF 77 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l 77 (547)
.-+++.+++|+|||..++-.+.
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578889999999976554333
No 203
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.91 E-value=9.1 Score=37.11 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~ 74 (547)
-+++.+++|+|||+.+..
T Consensus 106 vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHH
Confidence 366789999999975443
No 204
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=86.84 E-value=0.68 Score=41.32 Aligned_cols=121 Identities=11% Similarity=0.166 Sum_probs=70.2
Q ss_pred CcHHHHHHHHHHhCCC--cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCc
Q 008956 41 PTPIQAQSWPIALQSR--DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 118 (547)
Q Consensus 41 ~~~~Q~~~i~~il~g~--~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~ 118 (547)
..+-|..++..++... -.++.+.-|++||...+..++..... .|..+.+|+|+..-.....+...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~------~Gr~V~vLAp~~~s~~~l~~~~~------- 101 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE------QGREVQIIAADRRSQMNMKQDER------- 101 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH------TTCCEEEECSTTHHHHHHSCTTT-------
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh------cCeEEEEEcCchHHHHHHHhhcC-------
Confidence 3467888998887654 45667999999998755444443333 37799999999755444332211
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccccccCCcHHHHHHHHHh-CCCCce
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE-VPARRQ 197 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~-l~~~~q 197 (547)
+.- +++ |- ..+......+..=+++|||||-.|. .+++..++.. ...+.|
T Consensus 102 l~~--------------------~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 102 LSG--------------------ELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQ 151 (189)
T ss_dssp CSS--------------------CSS--ST----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCC
T ss_pred cCc--------------------cee--eh----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCE
Confidence 100 000 00 0111122223445689999999874 4455555543 334567
Q ss_pred EEEEecc
Q 008956 198 TLMYTAT 204 (547)
Q Consensus 198 ~l~~SAT 204 (547)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 7776544
No 205
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=86.84 E-value=2.5 Score=37.96 Aligned_cols=73 Identities=15% Similarity=0.309 Sum_probs=53.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH---HHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
++++||.|+++.-+..+++.+... ++.+..++|+....+.. ..+.. ...|+|+| +.+. ..+++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccC
Confidence 347999999999999999888775 46677888876654432 33333 58899999 3333 36788888
Q ss_pred eEEEEec
Q 008956 166 SYLVLDE 172 (547)
Q Consensus 166 ~~lVlDE 172 (547)
++||.=+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8888744
No 206
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.74 E-value=1.4 Score=42.13 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=19.1
Q ss_pred HHhCCCcEEEEcCCCchHHHHHHHH
Q 008956 51 IALQSRDIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 51 ~il~g~~vlv~a~TGsGKT~~~l~~ 75 (547)
-+..+.-+++.+++|+|||+.++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHH
Confidence 3556777899999999999765443
No 207
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.66 E-value=1.3 Score=43.41 Aligned_cols=90 Identities=9% Similarity=0.039 Sum_probs=52.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 136 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 136 (547)
-+++.+|+|+|||..++-.+...... ..+.+++++..-..+... .++.++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-----g~g~~vlyId~E~s~~~~---ra~~lGvd~------------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-----YPDAVCLFYDSEFGITPA---YLRSMGVDP------------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-----CTTCEEEEEESSCCCCHH---HHHHTTCCG-------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-----CCCceEEEEeccchhhHH---HHHHhCCCH-------------------
Confidence 57888999999998766554444322 114588998875544322 344544221
Q ss_pred hhCCCcEEEECcHHHHHH-H---hc-CCcCCCCeeEEEEecccccc
Q 008956 137 IDRGVDIVVATPGRLNDI-L---EM-RRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 137 ~~~~~~IlV~Tp~~L~~~-l---~~-~~~~l~~~~~lVlDEaH~ll 177 (547)
-++++..|..+... + .. ..+.-..+++||||-+..|.
T Consensus 83 ----d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ----ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ----GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ----HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 13555555444333 2 11 01334568999999999875
No 208
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.25 E-value=1.4 Score=48.94 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=33.3
Q ss_pred CccCCccCCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNA-GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~ 72 (547)
|...|++.+.-+++.+.|... -+...+|.+..-+ -+...+.+|+.+|+|+|||+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 456788888888888887754 2211111110000 0112357999999999999643
No 209
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.15 E-value=1 Score=50.04 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~ 72 (547)
+.+|+.+|+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999743
No 210
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=86.10 E-value=1.7 Score=37.70 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=53.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
+.++||.|+++..+.++++.+... ++.+..++++....+. +..+.. ...|+|+|. .+ ...+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcC
Confidence 348999999999999999888775 4677888887654433 334444 478999992 22 347778888
Q ss_pred eEEEEecc
Q 008956 166 SYLVLDEA 173 (547)
Q Consensus 166 ~~lVlDEa 173 (547)
++||.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88887544
No 211
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=85.86 E-value=0.54 Score=49.00 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=30.2
Q ss_pred CccCCccCCCCHHHHHHHHHC-C-CCCCcHHHHHHHHHH--hCCCcEEEEcCCCchHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNA-G-FSSPTPIQAQSWPIA--LQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~-g-~~~~~~~Q~~~i~~i--l~g~~vlv~a~TGsGKT~~~ 72 (547)
+...|+++.-.++..+.+... . +..+. .+..+ .-.+.+++.+|+|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 345788877677766666532 0 11111 11111 11356999999999999754
No 212
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=85.59 E-value=4 Score=37.02 Aligned_cols=72 Identities=19% Similarity=0.365 Sum_probs=51.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHhc------ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccc-c-----ccCCCCCC
Q 008956 263 GSKIIVFCSTKKMCDQLARNLTR------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-A-----ARGLDIKD 330 (547)
Q Consensus 263 ~~k~IVF~~s~~~~~~l~~~L~~------~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~-~-----~~GiDip~ 330 (547)
..++||.|+++..+..+++.+++ .+.+..++++.+....... +..+..+|+|+|.- + ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 34899999999999988887764 3568889999887655433 44567799999942 1 23456777
Q ss_pred ccEEEEc
Q 008956 331 IRVVVNY 337 (547)
Q Consensus 331 v~~VI~~ 337 (547)
+++||.-
T Consensus 159 ~~~lViD 165 (220)
T 1t6n_A 159 IKHFILD 165 (220)
T ss_dssp CCEEEEE
T ss_pred CCEEEEc
Confidence 8877753
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=85.44 E-value=4 Score=45.06 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
..++++.+|+|+|||..+-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4679999999999997543
No 214
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.39 E-value=1.1 Score=54.55 Aligned_cols=122 Identities=19% Similarity=0.239 Sum_probs=68.2
Q ss_pred HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCC-ceEEEEecCCCCC
Q 008956 52 ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPK 130 (547)
Q Consensus 52 il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~-~i~~~~~~g~~~~ 130 (547)
+..++.+++.+++|+|||..++..+...... +.+++|+.-. ++.++++ +..++... .+.+. . ...
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~-------Ge~~~Fit~e-e~~~~L~--a~~~G~dl~~l~~~--~--pd~ 1143 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAE-HALDPIY--ARKLGVDIDNLLCS--Q--PDT 1143 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTT-SCCCHHH--HHHTTCCTTTCEEE--C--CSS
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEcc-ccHHHHH--HHHcCCChhHheee--c--Ccc
Confidence 3456889999999999998776655555544 5578888654 5666666 33443322 12111 0 000
Q ss_pred hhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEEEeccccccc-------CC----------cHHHHHHHHHhCC
Q 008956 131 GPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-------MG----------FEPQIRKIVKEVP 193 (547)
Q Consensus 131 ~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ll~-------~g----------~~~~i~~i~~~l~ 193 (547)
.+ +...+.+.+. ....+++|||||.-.+.. ++ +...+.++...+.
T Consensus 1144 ~e--------------~~~~i~~~l~----~~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~ 1205 (2050)
T 3cmu_A 1144 GE--------------QALEICDALA----RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 1205 (2050)
T ss_dssp HH--------------HHHHHHHHHH----HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred hH--------------HHHHHHHHHH----HhCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 00 0011222222 134678999999886521 11 2244556666666
Q ss_pred CCceEEEEeccC
Q 008956 194 ARRQTLMYTATW 205 (547)
Q Consensus 194 ~~~q~l~~SAT~ 205 (547)
...-++++|...
T Consensus 1206 e~~stiI~tN~~ 1217 (2050)
T 3cmu_A 1206 QSNTLLIFINQI 1217 (2050)
T ss_dssp TTTCEEEEEECC
T ss_pred hCCeEEEEecCC
Confidence 666677776553
No 215
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=84.84 E-value=3 Score=42.25 Aligned_cols=28 Identities=11% Similarity=0.313 Sum_probs=22.7
Q ss_pred CCCccCCccCCCCHHHHHHHHHCCCCCC
Q 008956 14 PPPFMSFDATGFPPELLREVHNAGFSSP 41 (547)
Q Consensus 14 p~~~~~f~~~~l~~~l~~~l~~~g~~~~ 41 (547)
|.++..++..++++..++.|..+||...
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~tv 107 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLHTA 107 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCCBH
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCCcH
Confidence 4466778888999999999999997743
No 216
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=84.59 E-value=2.4 Score=37.81 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=45.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCCh---hhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKG---PQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~---~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
+.++||.|+++.-+..+++.+... ++.+..+.|+.+.. ..+..+.. ...|+|+|. . + ...+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~-~~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-V----A-ARGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-h----h-hcCCCcccC
Confidence 458999999999999998888774 46677777765433 33444443 488999992 2 2 236677888
Q ss_pred eEEEEe
Q 008956 166 SYLVLD 171 (547)
Q Consensus 166 ~~lVlD 171 (547)
++||.=
T Consensus 116 ~~VI~~ 121 (185)
T 2jgn_A 116 KHVINF 121 (185)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 888763
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.10 E-value=3.9 Score=45.21 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
.+++.+|||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999997544
No 218
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=83.73 E-value=2.1 Score=39.10 Aligned_cols=20 Identities=25% Similarity=0.084 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCchHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l 73 (547)
.+.-+.+.+|+|+|||+.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45567888999999997443
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=83.63 E-value=3.2 Score=43.40 Aligned_cols=19 Identities=32% Similarity=0.240 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~ 75 (547)
.+++++++|+|||+.+...
T Consensus 103 vI~ivG~~GvGKTTl~~kL 121 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKL 121 (504)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4677899999999865443
No 220
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.32 E-value=6.9 Score=39.91 Aligned_cols=18 Identities=28% Similarity=0.147 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~ 74 (547)
-++++++.|+|||+.+..
T Consensus 100 vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 356679999999986544
No 221
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=83.17 E-value=8.1 Score=35.97 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=52.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHhc-----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccc-----cc--cCCCC
Q 008956 261 EPGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-----AA--RGLDI 328 (547)
Q Consensus 261 ~~~~k~IVF~~s~~~~~~l~~~L~~-----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~-----~~--~GiDi 328 (547)
....++||.++++..+..+++.+++ .+.+..++++.+...+...+ ....+|+|+|.- +. ..+++
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCc
Confidence 3446899999999999988877764 25678889988866544333 246889999932 21 45677
Q ss_pred CCccEEEEc
Q 008956 329 KDIRVVVNY 337 (547)
Q Consensus 329 p~v~~VI~~ 337 (547)
..+++||.-
T Consensus 185 ~~~~~lViD 193 (249)
T 3ber_A 185 RALKYLVMD 193 (249)
T ss_dssp TTCCEEEEC
T ss_pred cccCEEEEc
Confidence 788887753
No 222
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.06 E-value=1.2 Score=44.19 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=29.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHH-HHHHHHHHHHh
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL-ATQIQDEAVKF 113 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L-~~Q~~~~~~~~ 113 (547)
.-+++.+++|+|||..++..+...... ......+.+++|+.-...+ ..++.+.+..+
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~-~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLP-GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSC-BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcc-cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 347888999999997555433322111 0000124578888754321 23444444443
No 223
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=83.04 E-value=4 Score=35.37 Aligned_cols=74 Identities=18% Similarity=0.359 Sum_probs=52.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
..++||.|+++.-+..+++.+.+. ++.+..++++.+..+. +..+.. ...|+|+|. .+ ...+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCcccC
Confidence 358999999999999998888774 4667788887664433 334444 478999992 22 346778888
Q ss_pred eEEEEecc
Q 008956 166 SYLVLDEA 173 (547)
Q Consensus 166 ~~lVlDEa 173 (547)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88887443
No 224
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=82.42 E-value=6.1 Score=34.50 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=53.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
..++||.|+++.-+..+++.+... ++.+..++++.+..+. +..+.. ...|+|+|.- ....+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhC
Confidence 358999999999999999888775 4667788887665443 334444 4899999931 2336777888
Q ss_pred eEEEEeccc
Q 008956 166 SYLVLDEAD 174 (547)
Q Consensus 166 ~~lVlDEaH 174 (547)
++||.-+..
T Consensus 101 ~~Vi~~d~p 109 (172)
T 1t5i_A 101 NIAFNYDMP 109 (172)
T ss_dssp SEEEESSCC
T ss_pred CEEEEECCC
Confidence 888875443
No 225
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=81.20 E-value=3.5 Score=36.14 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=52.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
..++||.|+++..+..+++.+.+. ++.+..++++.+..+. +..+.. ...|+|+|. . ....+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----V-CARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----S-CCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----c-hhcCCCcccC
Confidence 458999999999999988888764 4677888887665443 334444 489999993 2 2346788889
Q ss_pred eEEEEec
Q 008956 166 SYLVLDE 172 (547)
Q Consensus 166 ~~lVlDE 172 (547)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 9988543
No 226
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=80.92 E-value=2.3 Score=44.53 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=29.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
.+.-++|.+++|+|||..++-.+...... .+.++++++-- +-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh------cCCcEEEEecc-CCHHHHHHHH
Confidence 45568888999999997655444333221 13467777653 2234444443
No 227
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=80.56 E-value=2.6 Score=43.36 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=46.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEE
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYL 168 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~l 168 (547)
+.++||.||+++-++++++.+.+. ++.+..+++ ......+..+.. ..+|+|||. .+ ...+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg-~~R~~~~~~F~~g~~~vLVaT~-----v~-e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNR-KTFEREYPTIKQKKPDFILATD-----IA-EMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCS-SSCC--------CCCSEEEESS-----ST-TCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecc-hhHHHHHhhhcCCCceEEEECC-----hh-heeeccC-ceEE
Confidence 458999999999999999998876 466777777 445555556655 489999993 23 3467777 8887
Q ss_pred E
Q 008956 169 V 169 (547)
Q Consensus 169 V 169 (547)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 228
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=80.41 E-value=7.8 Score=35.79 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=52.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhc-----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-----cc-ccCCCCCC
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VA-ARGLDIKD 330 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~-----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-----~~-~~GiDip~ 330 (547)
.+.++||.+++++.+..+++.+++ .+.+..++++.+.......+.. ..+|+|+|. .+ ...+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999999988887765 3678889999887766554432 478999994 22 23457778
Q ss_pred ccEEEEcC
Q 008956 331 IRVVVNYD 338 (547)
Q Consensus 331 v~~VI~~d 338 (547)
+.+||.-.
T Consensus 177 ~~~lViDE 184 (242)
T 3fe2_A 177 TTYLVLDE 184 (242)
T ss_dssp CCEEEETT
T ss_pred ccEEEEeC
Confidence 88877533
No 229
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=80.26 E-value=5 Score=44.71 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~ 72 (547)
.++.+++++|+|+|||+.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3567999999999999743
No 230
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=80.23 E-value=7.6 Score=38.47 Aligned_cols=72 Identities=19% Similarity=0.377 Sum_probs=52.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhc------ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-cc-----ccCCCCC
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTR------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VA-----ARGLDIK 329 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~------~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~-----~~GiDip 329 (547)
.+.++||.|+++..+..+++.+++ .+.+..++++.+....... +..+..+|+|+|. .+ ...+++.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 345899999999999988887764 3668889999887665443 3456789999993 22 2345677
Q ss_pred CccEEEE
Q 008956 330 DIRVVVN 336 (547)
Q Consensus 330 ~v~~VI~ 336 (547)
.+++||.
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 7887774
No 231
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=80.10 E-value=4.7 Score=36.70 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=52.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH---HHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
+.++||.|+++.-++.+++.+.+. ++.+..++|+.+..+.. ..+.. ..+|+|+| +.+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVA-ARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTT-TCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chh-hcCCCCccC
Confidence 358999999999999999888775 46678888887655443 33444 48899999 222 346788888
Q ss_pred eEEEE
Q 008956 166 SYLVL 170 (547)
Q Consensus 166 ~~lVl 170 (547)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88885
No 232
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=80.09 E-value=7.9 Score=38.79 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=52.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
+.++||.|+++.-+..+++.+.+. ++.+..++++....+. +..+.. ..+|+|+|. .+. ..+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcccC
Confidence 568999999999999999888775 4667788887765443 233333 478999993 333 47888899
Q ss_pred eEEEE
Q 008956 166 SYLVL 170 (547)
Q Consensus 166 ~~lVl 170 (547)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98886
No 233
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.63 E-value=1.1 Score=42.68 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=24.3
Q ss_pred CCCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 008956 14 PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 14 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~ 71 (547)
|..+.+++++++++ +++.+ . +..+.-+++++|||||||+.
T Consensus 2 ~~~~~~l~~l~~~~-vl~~i----------------~-i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 2 PAEIPEFKKLGLPD-KVLEL----------------C-HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp ----CCGGGSSCCT-HHHHG----------------G-GCSSEEEEEECSTTCSHHHH
T ss_pred CCCCCChHHCCCHH-HHHHH----------------h-hCCCCEEEEECCCCccHHHH
Confidence 45556777777762 22211 1 34566788999999999974
No 234
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=79.43 E-value=1.9 Score=44.24 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELAT 104 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~ 104 (547)
...+++|.++||+|||... ..++..+.. .+..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH------CCCcEEEEeCCCchhH
Confidence 3578999999999999864 333333332 1558899999888764
No 235
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=78.82 E-value=5.5 Score=36.50 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=49.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhc------ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccc-c-----ccCCCCC
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTR------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-A-----ARGLDIK 329 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~------~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~-~-----~~GiDip 329 (547)
.+.++||.|++++.+..+++.+++ .+.+..++++.+..++...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 346899999999999998888764 35678899998876654433 25789999942 1 2345666
Q ss_pred CccEEEE
Q 008956 330 DIRVVVN 336 (547)
Q Consensus 330 ~v~~VI~ 336 (547)
.+++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6777664
No 236
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=78.80 E-value=2.1 Score=42.50 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.2
Q ss_pred CCeeEEEEecccccccC
Q 008956 163 NQVSYLVLDEADRMLDM 179 (547)
Q Consensus 163 ~~~~~lVlDEaH~ll~~ 179 (547)
.+.++|||||.-.+++.
T Consensus 230 ~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp SCEEEEEEETSSTTHHH
T ss_pred CCCCEEEEeCchHhhhh
Confidence 57899999999987653
No 237
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.69 E-value=8.5 Score=34.26 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=48.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhc------ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-c----ccc-CCCCC
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTR------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-V----AAR-GLDIK 329 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~------~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~----~~~-GiDip 329 (547)
.+.++||.++++..+..+++.+++ ...+..++++.+..+.... + ....+|+|+|. . +.. -+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 345899999999999988887754 3567788888876543322 2 35678999994 2 222 34566
Q ss_pred CccEEEE
Q 008956 330 DIRVVVN 336 (547)
Q Consensus 330 ~v~~VI~ 336 (547)
.+++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777774
No 238
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=78.60 E-value=7.8 Score=40.72 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=51.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc
Q 008956 263 GSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 320 (547)
Q Consensus 263 ~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~ 320 (547)
..++||.++++..+....+.|++. +.+..+|+..+..++..++..+..+..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 368999999999999999988764 7888999999999999999999999999999994
No 239
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=78.56 E-value=5.6 Score=42.54 Aligned_cols=58 Identities=12% Similarity=0.239 Sum_probs=51.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCCHHHHHHHHHHh--hcCCCcEEEEcc
Q 008956 263 GSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQF--RAGRSPVLVATD 320 (547)
Q Consensus 263 ~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~~~~R~~~l~~F--~~g~~~ILVaT~ 320 (547)
...+||.++++..+....+.|.+. +.+..++++++..++..++..+ ..+..+|||+|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 468999999999999999888764 7889999999999998888888 578899999996
No 240
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=78.40 E-value=1.7 Score=43.50 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=16.1
Q ss_pred ChHHHHHHHHHHHHhcccccHHHHHHHHc
Q 008956 370 DSRYASDLIKLLEGAKQQVPRELRDMASR 398 (547)
Q Consensus 370 ~~~~~~~l~~~l~~~~~~v~~~l~~l~~~ 398 (547)
+...+..+.+.+....+..+..|..+..-
T Consensus 230 t~~~l~~i~~~il~~y~~~~~~L~~i~~~ 258 (358)
T 2pk2_A 230 TLELLDELTHEFLQILEKTPNRLKRIWNW 258 (358)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCcccccchhcc
Confidence 34455555555555555566666665543
No 241
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=77.92 E-value=6.5 Score=37.96 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~ 74 (547)
-+++.+++|+|||+.+..
T Consensus 100 vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEECSSCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 356679999999986544
No 242
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=77.41 E-value=3.4 Score=48.21 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=28.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcH
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTR 100 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr 100 (547)
-+|.|..|||||.+.+--+...+.... .+.++|+|||..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~----~~~~il~lVP~q 42 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAP----FGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCT----TSSCEEEECCGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC----CCCcEEEEecCc
Confidence 378899999999877665555554421 246899999975
No 243
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=77.27 E-value=1.4 Score=52.75 Aligned_cols=44 Identities=20% Similarity=0.112 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI 106 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~ 106 (547)
+..+++.+++|+|||..++..+...... +.+++|+.-- +...|+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~-------g~~VlyiS~E-es~~ql 775 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAE-HALDPI 775 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTT-SCCCHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc-------CCCeEEEecc-chHHHH
Confidence 4568889999999998665544443322 4467777654 333444
No 244
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=76.28 E-value=1.2 Score=41.28 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 112 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~ 112 (547)
+.-+++.+++|+|||..++-.++...... +..++|++-. +-..++.+.+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~------~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY------GEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH------CCCEEEEESS-SCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc------CCCceeeccc-CCHHHHHHHHHH
Confidence 45688899999999976554444333221 3467777643 334455555443
No 245
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=76.14 E-value=9.7 Score=33.85 Aligned_cols=72 Identities=22% Similarity=0.256 Sum_probs=50.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcc---cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-----cc-ccCCCCCCcc
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQ---FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VA-ARGLDIKDIR 332 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~---~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-----~~-~~GiDip~v~ 332 (547)
.+.++||.|+++..+..+++.+++. +.+..++++.+.......+. ...+|+|+|. .+ ...+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999888754 56788888877554433332 2578999994 12 2345677788
Q ss_pred EEEEc
Q 008956 333 VVVNY 337 (547)
Q Consensus 333 ~VI~~ 337 (547)
+||.-
T Consensus 147 ~iViD 151 (207)
T 2gxq_A 147 VAVLD 151 (207)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77753
No 246
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=76.12 E-value=7.9 Score=39.31 Aligned_cols=71 Identities=30% Similarity=0.447 Sum_probs=52.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhccc-----ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-ccc-----cCCCCCC
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQF-----GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAA-----RGLDIKD 330 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~~-----~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~~-----~GiDip~ 330 (547)
.+.++||.|+++..+..+++.+.+.+ .+..+||+....++..... ..+|+|+|. .+. .-+++..
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 45799999999999999999887653 7889999998877655443 367999993 322 2456777
Q ss_pred ccEEEEc
Q 008956 331 IRVVVNY 337 (547)
Q Consensus 331 v~~VI~~ 337 (547)
+++||.-
T Consensus 126 ~~~vIiD 132 (494)
T 1wp9_A 126 VSLIVFD 132 (494)
T ss_dssp CSEEEEE
T ss_pred ceEEEEE
Confidence 8877753
No 247
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=75.51 E-value=2 Score=45.18 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=25.5
Q ss_pred HHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCchHHHH
Q 008956 31 REVHNAGFSSPTPIQAQSWPI-ALQSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 31 ~~l~~~g~~~~~~~Q~~~i~~-il~g~~vlv~a~TGsGKT~~ 71 (547)
..+...|. +++.+..-+.. +..+..+++++|||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44444442 34444444443 45677899999999999964
No 248
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=75.40 E-value=6.1 Score=41.53 Aligned_cols=50 Identities=20% Similarity=0.120 Sum_probs=28.3
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 53 LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
..|.-+++.+++|+|||+.....+. .... .+.+++++++... ..|+...+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g-~~~~------~G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVE-NACA------NKERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHH-HHHT------TTCCEEEEESSSC-HHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH-HHHh------CCCCEEEEEEeCC-HHHHHHHH
Confidence 3456788899999999975443222 2211 1346777765422 23544444
No 249
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=75.37 E-value=11 Score=36.87 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=34.8
Q ss_pred CeeEEEEecccccc-cCCcHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhc
Q 008956 164 QVSYLVLDEADRML-DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLL 217 (547)
Q Consensus 164 ~~~~lVlDEaH~ll-~~g~~~~i~~i~~~l~~~~q~l~~SAT~~~~~~~~~~~~l 217 (547)
..+++++|.+-++- +......+..+...+.+...++.+.++...+..+.+..+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 35678899987643 2234556666666666677788888887666666665543
No 250
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=74.35 E-value=5.7 Score=45.68 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHhcc-----c----ceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-ccccCCC-CC
Q 008956 261 EPGSKIIVFCSTKKMCDQLARNLTRQ-----F----GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VAARGLD-IK 329 (547)
Q Consensus 261 ~~~~k~IVF~~s~~~~~~l~~~L~~~-----~----~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~~~GiD-ip 329 (547)
..+.++||.++++..+..+++.+++. + .+..++|+.+..++....+.++. .+|+|+|. .+..-+. +.
T Consensus 97 ~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~ 174 (1054)
T 1gku_B 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG 174 (1054)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc
Confidence 34578999999999999988888642 3 67889999999888777777776 89999994 2222222 55
Q ss_pred CccEEEE
Q 008956 330 DIRVVVN 336 (547)
Q Consensus 330 ~v~~VI~ 336 (547)
.+++||.
T Consensus 175 ~l~~lVi 181 (1054)
T 1gku_B 175 HFDFIFV 181 (1054)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 7777774
No 251
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=74.33 E-value=3.3 Score=41.26 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCchHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~ 71 (547)
.+..+++.+|||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345688899999999964
No 252
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=73.46 E-value=24 Score=37.03 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=56.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
+.++||.|+++.-+..+++.+.+... .++.+..++++....+. +..+.. ..+|+|||. . ....+++.++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----h-hhcCCCcccC
Confidence 56999999999999999999987653 24677788887765443 233333 489999993 2 2347888889
Q ss_pred eEEEEeccc
Q 008956 166 SYLVLDEAD 174 (547)
Q Consensus 166 ~~lVlDEaH 174 (547)
++||.-..-
T Consensus 412 ~~VI~~~~p 420 (563)
T 3i5x_A 412 HEVLQIGVP 420 (563)
T ss_dssp CEEEEESCC
T ss_pred CEEEEECCC
Confidence 988866544
No 253
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=73.42 E-value=6.5 Score=35.85 Aligned_cols=71 Identities=13% Similarity=0.274 Sum_probs=46.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhc----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-cc-----ccCCCCCCc
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VA-----ARGLDIKDI 331 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~-----~~GiDip~v 331 (547)
.+.++||.++++..+..+++.+++ .+.+..++++.+...+...+ . ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999999888875 25677888877655433322 2 3478999994 11 235567778
Q ss_pred cEEEE
Q 008956 332 RVVVN 336 (547)
Q Consensus 332 ~~VI~ 336 (547)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87774
No 254
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=73.27 E-value=7.1 Score=37.30 Aligned_cols=19 Identities=37% Similarity=0.405 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
...+++.+|+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999997543
No 255
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=72.88 E-value=4.3 Score=37.49 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=43.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-----cccc-CCCCCC
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAAR-GLDIKD 330 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-----~~~~-GiDip~ 330 (547)
.+.++||.++++..+..+++.+++. +.+..++++.+... ..+.+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999998888642 45666777655332 23445567789999993 3333 356667
Q ss_pred ccEEEE
Q 008956 331 IRVVVN 336 (547)
Q Consensus 331 v~~VI~ 336 (547)
+.+||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 256
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=72.44 E-value=3.7 Score=38.05 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=19.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhh
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKR 82 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~ 82 (547)
++++.++.|+|||+.++-.+......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47888999999998766555544433
No 257
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=72.33 E-value=76 Score=34.16 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=57.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhH---HHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL---KDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
+.++||.|+|+.-++.+.+.+... ++.+..++++....+.. ..+.. ..+|+|+|. . ....+++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~-l~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----L-LREGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----C-CSTTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----h-hhCCcccCCC
Confidence 469999999999999999888876 35667777765544332 33333 488999993 2 2457888999
Q ss_pred eEEEEeccccc
Q 008956 166 SYLVLDEADRM 176 (547)
Q Consensus 166 ~~lVlDEaH~l 176 (547)
+++|+-|++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999999864
No 258
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.09 E-value=6 Score=35.87 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=43.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHhc-----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcccc------ccCCCCC
Q 008956 261 EPGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVA------ARGLDIK 329 (547)
Q Consensus 261 ~~~~k~IVF~~s~~~~~~l~~~L~~-----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~------~~GiDip 329 (547)
..+.++||.++++..+..+++.+++ .+.+..++++.+..+.... +. ..+|+|+|.-. ...+++.
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchh
Confidence 3456899999999999988887764 2567788887765443322 22 37899999421 2345666
Q ss_pred CccEEEE
Q 008956 330 DIRVVVN 336 (547)
Q Consensus 330 ~v~~VI~ 336 (547)
.+++||.
T Consensus 155 ~~~~iVi 161 (224)
T 1qde_A 155 KIKMFIL 161 (224)
T ss_dssp TCCEEEE
T ss_pred hCcEEEE
Confidence 7777774
No 259
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=71.93 E-value=5.8 Score=39.33 Aligned_cols=20 Identities=45% Similarity=0.464 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCchHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l 73 (547)
....+++.+|+|+|||+.+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999997543
No 260
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=71.34 E-value=31 Score=36.43 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=57.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
+.++||.|+++.-++.+++.+.+... .++.+..++++....+. +..+.. ..+|+|||. . ....+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~-~~~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----h-hhcCCCcccC
Confidence 45899999999999999999987653 24677788887665443 333333 488999993 2 2347888889
Q ss_pred eEEEEeccc
Q 008956 166 SYLVLDEAD 174 (547)
Q Consensus 166 ~~lVlDEaH 174 (547)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 998876654
No 261
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=71.33 E-value=5.4 Score=40.67 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=17.8
Q ss_pred HHHHHHHHhC--CCcEEEEcCCCchHHHH
Q 008956 45 QAQSWPIALQ--SRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 45 Q~~~i~~il~--g~~vlv~a~TGsGKT~~ 71 (547)
+..++..++. +.-+++.+|||||||+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3444444433 34578899999999974
No 262
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=71.24 E-value=7.5 Score=37.62 Aligned_cols=74 Identities=20% Similarity=0.337 Sum_probs=53.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHH---HhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK---DIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~---~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
+.++||.|+++.-++.+++.+... ++.+..++|+....+... .+.. ..+|+||| +.+ ...+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va-~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVA-ARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STT-TCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chh-hcCccccce
Confidence 358999999999988888877654 577888898877655433 3333 48899999 222 347788889
Q ss_pred eEEEEecc
Q 008956 166 SYLVLDEA 173 (547)
Q Consensus 166 ~~lVlDEa 173 (547)
++||.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 98885443
No 263
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=70.83 E-value=9.7 Score=34.83 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=47.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-cc----cc--CCCCC
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VA----AR--GLDIK 329 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~----~~--GiDip 329 (547)
.+.++||.++++..+..+++.+++. +.+..++++.+.......+ ...+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999988888652 5678888887654433322 3678999994 22 22 35666
Q ss_pred CccEEEE
Q 008956 330 DIRVVVN 336 (547)
Q Consensus 330 ~v~~VI~ 336 (547)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777764
No 264
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.36 E-value=19 Score=33.74 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=50.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-----cc--ccCCCCC
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VA--ARGLDIK 329 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-----~~--~~GiDip 329 (547)
.+.++||.++++..+..+++.+++. ..+..+.++.........+ ..+ .+|+|+|. .+ ...+++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3568999999999999998888752 4567788887765544333 233 78999993 22 2246777
Q ss_pred CccEEEE
Q 008956 330 DIRVVVN 336 (547)
Q Consensus 330 ~v~~VI~ 336 (547)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888774
No 265
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=70.34 E-value=16 Score=37.98 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=27.7
Q ss_pred CeeEEEEecccccccC-CcHHHHHHH---HHhC-C--CCceEEEEeccCcHHHHHHHHHh
Q 008956 164 QVSYLVLDEADRMLDM-GFEPQIRKI---VKEV-P--ARRQTLMYTATWPREVRKIAADL 216 (547)
Q Consensus 164 ~~~~lVlDEaH~ll~~-g~~~~i~~i---~~~l-~--~~~q~l~~SAT~~~~~~~~~~~~ 216 (547)
.++++|||-+=++-.. .....+..+ ...+ + +..-+|.+.||...+....++.+
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f 434 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLF 434 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHH
Confidence 4578899988654221 122233333 3323 2 22346788888765555555554
No 266
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=69.72 E-value=16 Score=37.26 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=15.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLPG 76 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~ 76 (547)
.+++++++|+|||+.+.-.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46667999999998665433
No 267
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=69.57 E-value=7.1 Score=36.40 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=28.8
Q ss_pred ccCCccCCCCHHHHHHHHHC-C-CCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 008956 17 FMSFDATGFPPELLREVHNA-G-FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 17 ~~~f~~~~l~~~l~~~l~~~-g-~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~ 72 (547)
...|+++.-.+.+.+.+... . +..+..++.. .....+.+++.+|+|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 35677777777776666531 0 0000000000 0112356999999999999754
No 268
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=69.52 E-value=4.6 Score=40.60 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=27.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRE 101 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~ 101 (547)
.+.++++.++||+|||...-..+...... +.+++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-------~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-------GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-------CCEEEEEeCCcC
Confidence 56789999999999997543322222221 457888888754
No 269
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=69.43 E-value=4.4 Score=36.91 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=27.4
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHH
Q 008956 38 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 38 ~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~ 71 (547)
+..-+.-|..++..+..|.-+.+.+|.|+|||+.
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3444556778888888888899999999999974
No 270
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=68.79 E-value=7.1 Score=42.48 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=48.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEE
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYL 168 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~l 168 (547)
+.++||.||+++-++++++.+.+. ++.+..+++. .....+..+.. ..+|+||| +.+. ..+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e-~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISE-MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGG-TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhh-cceeeC-CcEE
Confidence 468999999999999988888765 4677777773 34444455554 48999999 3333 366777 7776
Q ss_pred E
Q 008956 169 V 169 (547)
Q Consensus 169 V 169 (547)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 271
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=68.51 E-value=5.9 Score=41.39 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=26.2
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 008956 37 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 37 g~~~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~ 72 (547)
.+.--...=..++..+..+.++++.+|+|+|||..+
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 444444444555666778899999999999999643
No 272
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=68.37 E-value=12 Score=36.48 Aligned_cols=74 Identities=14% Similarity=0.240 Sum_probs=52.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
+.++||.|+++.-+..+++.+.+. ++.+..++++....+. ...+.. ..+|+|+|. .+. ..+++.++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCcccC
Confidence 458999999999999999888875 4567777777654433 333444 478999993 222 26778888
Q ss_pred eEEEEecc
Q 008956 166 SYLVLDEA 173 (547)
Q Consensus 166 ~~lVlDEa 173 (547)
++||.-+.
T Consensus 308 ~~Vi~~~~ 315 (367)
T 1hv8_A 308 NCVINYHL 315 (367)
T ss_dssp SEEEESSC
T ss_pred CEEEEecC
Confidence 88886443
No 273
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=67.83 E-value=3.8 Score=40.01 Aligned_cols=26 Identities=19% Similarity=0.052 Sum_probs=20.2
Q ss_pred HHHHHHhCCCcEEEEcCCCchHHHHH
Q 008956 47 QSWPIALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 47 ~~i~~il~g~~vlv~a~TGsGKT~~~ 72 (547)
.+...+..++++++.+|+|+|||..+
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 33445556889999999999999754
No 274
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=67.55 E-value=28 Score=37.60 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=56.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
+.++||.|+|+.-++.+.+.+.+.. +.+..++++....+. +..+.. ..+|+|+|. .+ ...+++.++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG----IRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC----CCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCC
Confidence 4599999999999999998888763 566667776554333 333444 488999992 22 347788899
Q ss_pred eEEEEeccccc
Q 008956 166 SYLVLDEADRM 176 (547)
Q Consensus 166 ~~lVlDEaH~l 176 (547)
+++|+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99999888753
No 275
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=67.21 E-value=13 Score=37.07 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=53.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
..++||.|+++.-+..+++.+.+. ++.+..++++....+. +..+.. ..+|+|+|. . ....+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----c-cccCCCccCC
Confidence 358999999999999999988876 3566777887664443 334444 478999993 2 2347888899
Q ss_pred eEEEEecc
Q 008956 166 SYLVLDEA 173 (547)
Q Consensus 166 ~~lVlDEa 173 (547)
++||.-..
T Consensus 336 ~~Vi~~~~ 343 (412)
T 3fht_A 336 SVVINFDL 343 (412)
T ss_dssp EEEEESSC
T ss_pred CEEEEECC
Confidence 99885443
No 276
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=67.20 E-value=46 Score=34.26 Aligned_cols=75 Identities=16% Similarity=0.090 Sum_probs=50.2
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeE
Q 008956 92 TVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSY 167 (547)
Q Consensus 92 ~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 167 (547)
..+|++....-+..+++.+.+.. ..+..+.|+....+. +..+.. ..+|+|+|+..+.. .+++.++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 44455555666666666665543 367778887664432 333333 47899999877754 788999999
Q ss_pred EEEecccc
Q 008956 168 LVLDEADR 175 (547)
Q Consensus 168 lVlDEaH~ 175 (547)
||+..+..
T Consensus 420 vi~~~~~~ 427 (510)
T 2oca_A 420 VVLAHGVK 427 (510)
T ss_dssp EEESSCCC
T ss_pred EEEeCCCC
Confidence 99988773
No 277
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=66.33 E-value=12 Score=35.58 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=28.9
Q ss_pred HHHHHHHHCCCCCCcHHHHHH-HHHHhCCC-----cEEEEcCCCchHHHHHH
Q 008956 28 ELLREVHNAGFSSPTPIQAQS-WPIALQSR-----DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 28 ~l~~~l~~~g~~~~~~~Q~~~-i~~il~g~-----~vlv~a~TGsGKT~~~l 73 (547)
.+.+-|...||. |++... +..+++++ .+++.+|+|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 566777766764 555333 45555543 37888999999997654
No 278
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=65.49 E-value=20 Score=36.34 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=52.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeE
Q 008956 92 TVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSY 167 (547)
Q Consensus 92 ~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 167 (547)
++||.|+++.-+..+++.+.+. ++.+..++|+....+. +..+.. .+.|+|||. +....+++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 4999999999999999888775 4667888887765443 334444 489999994 2345788888998
Q ss_pred EEEe
Q 008956 168 LVLD 171 (547)
Q Consensus 168 lVlD 171 (547)
||.-
T Consensus 372 VI~~ 375 (434)
T 2db3_A 372 VINY 375 (434)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8863
No 279
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=65.48 E-value=10 Score=36.03 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=30.3
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH-hCCCcEEEEcCCCchHHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQA-QSWPIA-LQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~i-l~g~~vlv~a~TGsGKT~~~l 73 (547)
+...|+++.-.+.+.+.|...=. .+... +.+..+ ...+.+++.+|+|+|||+.+-
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 34567777666777666653200 00000 000001 125689999999999997543
No 280
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=65.15 E-value=5.4 Score=36.16 Aligned_cols=71 Identities=11% Similarity=0.254 Sum_probs=46.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhc---------ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-----cccc-CC
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTR---------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VAAR-GL 326 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~---------~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-----~~~~-Gi 326 (547)
.+.++||.++++..+..+++.+++ .+.+..++++.+..+.. +.+ ....+|+|+|. .+.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 346899999999999888887654 24567778876543321 111 24678999994 2222 35
Q ss_pred CCCCccEEEE
Q 008956 327 DIKDIRVVVN 336 (547)
Q Consensus 327 Dip~v~~VI~ 336 (547)
++..+++||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 5667777664
No 281
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=65.05 E-value=31 Score=35.53 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=18.5
Q ss_pred HHhCCCcEEEEcCCCchHHHHHH
Q 008956 51 IALQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 51 ~il~g~~vlv~a~TGsGKT~~~l 73 (547)
.+.+|+.+++.++.|+|||..+.
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHH
Confidence 34568889999999999997543
No 282
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=64.81 E-value=16 Score=38.92 Aligned_cols=42 Identities=31% Similarity=0.433 Sum_probs=30.0
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
+.+.+++++||.-.-+|......+.+.+..+...+ ++++.+-
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNK-TVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 45678999999999888777777777777765544 4444443
No 283
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=64.77 E-value=18 Score=35.59 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=55.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
..++||.|+++.-+..+++.+.+. ++.+..++++....+. +..+.. ..+|+|+|. +....+++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccC
Confidence 468999999999999999888775 3566777777664433 344444 478999993 22457888999
Q ss_pred eEEEEecccc
Q 008956 166 SYLVLDEADR 175 (547)
Q Consensus 166 ~~lVlDEaH~ 175 (547)
++||.-+...
T Consensus 313 ~~Vi~~~~p~ 322 (395)
T 3pey_A 313 SMVVNYDLPT 322 (395)
T ss_dssp EEEEESSCCB
T ss_pred CEEEEcCCCC
Confidence 9999766554
No 284
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=64.29 E-value=21 Score=32.87 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=48.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-cc-----ccCCCCCCc
Q 008956 263 GSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VA-----ARGLDIKDI 331 (547)
Q Consensus 263 ~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~-----~~GiDip~v 331 (547)
+.++||.|++++.+..+++.+++. +.+..++++.+.......+ ....+|+|+|. .+ ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999988877642 4577788887655433222 34678999994 22 123567777
Q ss_pred cEEEEc
Q 008956 332 RVVVNY 337 (547)
Q Consensus 332 ~~VI~~ 337 (547)
.+||.-
T Consensus 176 ~~lViD 181 (253)
T 1wrb_A 176 KYIVLD 181 (253)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 877743
No 285
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=67.75 E-value=1.4 Score=38.55 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=47.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChh---hHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP---QLKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
+.++||.|+++..+..+++.+... ++.+..++|+....+ .+..+.. ...|+|+|. .+. ..+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA-RGIDIPDV 99 (170)
Confidence 358999999999999888877664 456666777654333 2333333 378999992 222 25667777
Q ss_pred eEEEEec
Q 008956 166 SYLVLDE 172 (547)
Q Consensus 166 ~~lVlDE 172 (547)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 7777643
No 286
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=63.13 E-value=23 Score=34.84 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=50.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhc-----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccc-c-----ccCCCCCC
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-A-----ARGLDIKD 330 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~-----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~-~-----~~GiDip~ 330 (547)
.+.++||.|+++..+..+++.+.+ .+.+..++++.+..+....+. ..+|+|+|.- + ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456999999999999988887764 256888899988766554443 4679999932 1 22455667
Q ss_pred ccEEEEc
Q 008956 331 IRVVVNY 337 (547)
Q Consensus 331 v~~VI~~ 337 (547)
+++||.-
T Consensus 163 ~~~vIiD 169 (394)
T 1fuu_A 163 IKMFILD 169 (394)
T ss_dssp CCEEEEE
T ss_pred CcEEEEE
Confidence 7777743
No 287
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=62.89 E-value=4.5 Score=35.62 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCchHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~ 71 (547)
.++-+++++|+|+|||+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788899999999974
No 288
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=62.88 E-value=15 Score=36.53 Aligned_cols=19 Identities=47% Similarity=0.543 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
...+++.+|+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 289
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=62.72 E-value=55 Score=32.11 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
.+++++++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47778999999997543
No 290
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=62.65 E-value=2.8 Score=39.22 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=31.7
Q ss_pred CCccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCchHHHHH
Q 008956 15 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIAL--QSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 15 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--~g~~vlv~a~TGsGKT~~~ 72 (547)
.|..+|+++.-.+.....+...-. .. -...++..+- -.+.+++.+|+|+|||+.+
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~--~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVE--FL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHH--HH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH--HH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 345678888777777666653211 00 0112222221 1245899999999999743
No 291
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=61.92 E-value=4.8 Score=36.06 Aligned_cols=20 Identities=25% Similarity=0.076 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCchHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l 73 (547)
.++.+++.+++|+|||+.+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 45678999999999998543
No 292
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=61.39 E-value=3 Score=49.30 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=30.0
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEe
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 202 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~S 202 (547)
+.+-++||+|||---+|..-+..+.+.+..+.+++-+|..+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 34567899999998888777777888777766666455444
No 293
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=61.12 E-value=21 Score=35.52 Aligned_cols=72 Identities=13% Similarity=0.309 Sum_probs=52.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCee
Q 008956 91 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQVS 166 (547)
Q Consensus 91 ~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 166 (547)
.++||.|+++.-+..+++.+.+. ++.+..++++....+. +..+.. ...|+|+|. . ....+++.+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----V-WARGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----G-GSSSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhCcCCcccCC
Confidence 48999999999999998888775 3566778887664433 333333 478999993 2 24478888999
Q ss_pred EEEEec
Q 008956 167 YLVLDE 172 (547)
Q Consensus 167 ~lVlDE 172 (547)
+||.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988644
No 294
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=61.08 E-value=4.4 Score=39.94 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
+-++|++|||+|||..++
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 457889999999997544
No 295
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=61.02 E-value=1.9 Score=41.24 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=27.3
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH--hCCCcEEEEcCCCchHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQA-QSWPIA--LQSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~i--l~g~~vlv~a~TGsGKT~~ 71 (547)
|-..|++++-.+++.+.|...= ..|+.. +++..+ .-.+.+++.+|+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 4467888887777777776421 122222 222221 1124599999999999974
No 296
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=60.93 E-value=7.9 Score=39.82 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
.+.+|+.+|+|+|||+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3679999999999997554
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=60.80 E-value=5.1 Score=35.15 Aligned_cols=20 Identities=30% Similarity=0.174 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~ 74 (547)
.+.+++.+++|||||+.+-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45788999999999986543
No 298
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=60.70 E-value=23 Score=35.06 Aligned_cols=74 Identities=12% Similarity=0.215 Sum_probs=53.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhh---HHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCe
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQ---LKDIDR-GVDIVVATPGRLNDILEMRRISLNQV 165 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 165 (547)
..++||.|+++.-+..+++.+.... +.+..++++....+. +..+.. ...|+|+|. +....+++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCC
Confidence 4589999999999999999888763 566777777664433 334444 478999993 22347788889
Q ss_pred eEEEEecc
Q 008956 166 SYLVLDEA 173 (547)
Q Consensus 166 ~~lVlDEa 173 (547)
++||.-+.
T Consensus 328 ~~Vi~~~~ 335 (400)
T 1s2m_A 328 NVVINFDF 335 (400)
T ss_dssp EEEEESSC
T ss_pred CEEEEeCC
Confidence 98886443
No 299
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=60.56 E-value=4.1 Score=35.46 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
++-+++++++|||||+++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345888999999999754
No 300
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=60.42 E-value=5.5 Score=39.68 Aligned_cols=21 Identities=43% Similarity=0.389 Sum_probs=17.4
Q ss_pred HHhCCCcEEEEcCCCchHHHH
Q 008956 51 IALQSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 51 ~il~g~~vlv~a~TGsGKT~~ 71 (547)
.+..+..+++++|||||||+.
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 345688999999999999973
No 301
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=60.33 E-value=11 Score=44.36 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=28.7
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEE
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMY 201 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~ 201 (547)
+.+.+++|+||+=--+|..-+..+.+.+..+.+.+-+|+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iii 609 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII 609 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEE
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567899999999999987777777777665444433433
No 302
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=60.11 E-value=6 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~ 72 (547)
....+++.+++|+|||+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999754
No 303
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=60.08 E-value=3.2 Score=39.49 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=31.3
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCchHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIAL--QSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il--~g~~vlv~a~TGsGKT~~~ 72 (547)
|...|+++.-.+.+.+.+...-.. .. ...++..+- -.+.+++.+|+|+|||+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456788887777777766643110 00 012222221 1245899999999999743
No 304
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=59.78 E-value=4.4 Score=35.46 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=17.0
Q ss_pred hCCCcEEEEcCCCchHHHHHH
Q 008956 53 LQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~~l 73 (547)
...+.+++.+++|+|||+.+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 345779999999999998544
No 305
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=59.48 E-value=4 Score=35.09 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
-+++.+++|||||+.+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999997543
No 306
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=59.38 E-value=4.4 Score=36.77 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
++-+++.+|||+|||..++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4568899999999996443
No 307
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=59.37 E-value=5.8 Score=39.50 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=18.3
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
++..+++|.++ ++-++||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 45667788874 44589999999753
No 308
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=59.23 E-value=22 Score=36.93 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=46.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHhc-----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-cc----ccC-C-CCCC
Q 008956 263 GSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VA----ARG-L-DIKD 330 (547)
Q Consensus 263 ~~k~IVF~~s~~~~~~l~~~L~~-----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~----~~G-i-Dip~ 330 (547)
+.++||.|+++..+..+++.+++ .+.+..++|+.+...+...+. ...+|+|+|. .+ ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 57899999999999888887765 467888999887655432222 1367999993 22 222 3 5677
Q ss_pred ccEEEEc
Q 008956 331 IRVVVNY 337 (547)
Q Consensus 331 v~~VI~~ 337 (547)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8877753
No 309
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=59.07 E-value=23 Score=39.05 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=53.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhc-------cCCceEEEEecCCCCChhhHHHhh--------C-CCcEEEECcHHHHH
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFG-------KSSRISCTCLYGGAPKGPQLKDID--------R-GVDIVVATPGRLND 153 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~-------~~~~i~~~~~~g~~~~~~~~~~~~--------~-~~~IlV~Tp~~L~~ 153 (547)
...+||.+|++.-+.++++.+.+.. ...++.+..++++....++...+. . ...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 4599999999999999988887522 235688888998877655443322 2 368999993
Q ss_pred HHhcCCcCCCCeeEEEE
Q 008956 154 ILEMRRISLNQVSYLVL 170 (547)
Q Consensus 154 ~l~~~~~~l~~~~~lVl 170 (547)
.+.. .+++..+.+||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 3332 677888887774
No 310
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=58.75 E-value=12 Score=38.21 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=46.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEE
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYL 168 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~l 168 (547)
+.++||+||+++-++.+++.+.+. ++.+..+++. .....+..+.. ..+|+||| +.+. ..+++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT-----~v~e-~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK-TFESEYPKCKSEKWDFVITT-----DISE-MGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT-THHHHTTHHHHSCCSEEEEC-----GGGG-TSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEEC-----chHH-cCcccC-CcEE
Confidence 357999999999999999998876 4667777775 33333444443 58999999 3333 356665 4444
No 311
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=58.29 E-value=13 Score=40.10 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=47.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhCCCcEEEECcHHHHHHHhcCCcCCCCeeEEE
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLV 169 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 169 (547)
+.++||.|++++-++++++.+.+. ++.+..++++....+. ...+.+|+|||. .+.. .+++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vaer-GIDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMT-GYTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHH-HCCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHc-cCCCC-CcEEE
Confidence 468999999999999998888764 4778888888765542 234569999993 3332 45554 77666
No 312
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=58.29 E-value=12 Score=38.35 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=47.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEE
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYL 168 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~l 168 (547)
..++||.||++.-++++++.+.+. ++.+..+.+... ...+..+.. ..+|+||| +.+. ..+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT-----~v~~-~GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTT-----DISE-MGANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEEC-----GGGG-SSCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEEC-----CHHH-hCcCCCC-CEE
Confidence 348999999999999988888764 466667766543 334444444 48999999 3333 4677777 665
Q ss_pred E
Q 008956 169 V 169 (547)
Q Consensus 169 V 169 (547)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 313
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=58.27 E-value=6 Score=35.76 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~ 72 (547)
.++-+++++|+|+|||+.+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3556788899999999743
No 314
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=58.11 E-value=5 Score=39.17 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
+-++|.+|||+|||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 346788999999997544
No 315
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=57.74 E-value=23 Score=36.20 Aligned_cols=10 Identities=0% Similarity=-0.091 Sum_probs=5.5
Q ss_pred cEEEEcCCCC
Q 008956 332 RVVVNYDFPT 341 (547)
Q Consensus 332 ~~VI~~d~p~ 341 (547)
..|+.-++|+
T Consensus 103 ~~lfV~nL~~ 112 (437)
T 3pgw_S 103 KTLFVARVNY 112 (437)
T ss_pred CEEEEeCCCC
Confidence 4555555665
No 316
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=57.61 E-value=5.3 Score=36.43 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=25.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhCC----CcEEEEcCCCchHHHHHH
Q 008956 28 ELLREVHNAGFSSPTPIQAQSWPIALQS----RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 28 ~l~~~l~~~g~~~~~~~Q~~~i~~il~g----~~vlv~a~TGsGKT~~~l 73 (547)
.+.+-|.-.+ ..+... ..++..++.+ +.+++.+|+|+|||..++
T Consensus 29 ~I~~~l~yq~-~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 29 PIVQFLRYQQ-IEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHHTT-CCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHcC-cCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 4444444333 233344 3444444443 348889999999997543
No 317
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=57.38 E-value=16 Score=42.51 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=38.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcc-----CCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCR-----NDPRLGPTVLVLSPTRELATQIQDEAVK 112 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~-----~~~~~~~~vLil~Ptr~L~~Q~~~~~~~ 112 (547)
...+|.|.-|||||.+...-++..+.... ..+-....+|+|+=|+.=+.++.+.+.+
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 34599999999999876655555554321 1112234799999998877777666554
No 318
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=57.28 E-value=5.6 Score=37.32 Aligned_cols=17 Identities=29% Similarity=0.044 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
-+++.++||||||+.+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36788999999997543
No 319
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=56.91 E-value=7 Score=38.32 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=18.4
Q ss_pred HHHHHHhCCCcE--EEEcCCCchHHHH
Q 008956 47 QSWPIALQSRDI--VAIAKTGSGKTLG 71 (547)
Q Consensus 47 ~~i~~il~g~~v--lv~a~TGsGKT~~ 71 (547)
..+..++.|.++ ++-++||||||.+
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceE
Confidence 345566788874 4458999999975
No 320
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=56.65 E-value=26 Score=37.02 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHhC-----CCcEEEEcCCCchHHHHHH
Q 008956 42 TPIQAQSWPIALQ-----SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 42 ~~~Q~~~i~~il~-----g~~vlv~a~TGsGKT~~~l 73 (547)
++-..+.+...+. .+-++|+++.|.|||..+.
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~ 165 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAA 165 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHH
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHH
Confidence 4445555555543 2457888999999997543
No 321
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=56.55 E-value=5.8 Score=38.59 Aligned_cols=17 Identities=35% Similarity=0.344 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
-++|++|||+|||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36778999999997544
No 322
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=56.05 E-value=5.1 Score=39.37 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.6
Q ss_pred HhCCCcEEEEcCCCchHHH
Q 008956 52 ALQSRDIVAIAKTGSGKTL 70 (547)
Q Consensus 52 il~g~~vlv~a~TGsGKT~ 70 (547)
+..+..++++++||||||+
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3468899999999999997
No 323
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=55.76 E-value=5.4 Score=35.02 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
+.-+++.+++|||||+.+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568889999999998543
No 324
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=55.57 E-value=5.1 Score=35.30 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=15.9
Q ss_pred HhCCCcEEEEcCCCchHHHH
Q 008956 52 ALQSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 52 il~g~~vlv~a~TGsGKT~~ 71 (547)
+..+.-+++.+++|||||+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34566788899999999974
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=55.37 E-value=7.4 Score=34.29 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCchHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l 73 (547)
.+..+++.+++|||||+++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999997543
No 326
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=55.35 E-value=18 Score=36.01 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=19.4
Q ss_pred cCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 62 AKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 62 a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
+.-|.|||+.++..+...... +.++|+|-
T Consensus 151 ~KGGvGKTT~a~nLA~~La~~-------g~rVlliD 179 (373)
T 3fkq_A 151 PCGGVGTSTVAAACAIAHANM-------GKKVFYLN 179 (373)
T ss_dssp SSTTSSHHHHHHHHHHHHHHH-------TCCEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHhC-------CCCEEEEE
Confidence 588999999776555544433 44677764
No 327
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=55.33 E-value=7 Score=34.81 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=16.0
Q ss_pred hCCCcEEEEcCCCchHHHHH
Q 008956 53 LQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~~ 72 (547)
..+.-+++.+++|||||+.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667888999999999743
No 328
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=54.83 E-value=8.4 Score=38.16 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=20.1
Q ss_pred HHHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 47 QSWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 47 ~~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
..+..+++|.++ ++-++||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 367778889875 44589999999764
No 329
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=54.72 E-value=7.7 Score=38.58 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=17.9
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLG 71 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~ 71 (547)
++..++.|.++ ++-++||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 45566788875 4458999999975
No 330
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=54.58 E-value=8 Score=37.97 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=19.9
Q ss_pred HHHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 47 QSWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 47 ~~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
..+..++.|.++ ++-++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 467778899874 44589999999753
No 331
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=54.42 E-value=11 Score=36.74 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~ 74 (547)
-+++.+++|+|||+.+..
T Consensus 107 vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 366779999999986543
No 332
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=54.35 E-value=8 Score=38.58 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=18.4
Q ss_pred HHHHHHhCCCcE--EEEcCCCchHHHH
Q 008956 47 QSWPIALQSRDI--VAIAKTGSGKTLG 71 (547)
Q Consensus 47 ~~i~~il~g~~v--lv~a~TGsGKT~~ 71 (547)
.++..+++|.++ ++-++||||||.+
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 345567788874 4458999999965
No 333
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=54.16 E-value=5.6 Score=34.49 Aligned_cols=16 Identities=38% Similarity=0.356 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHHH
Q 008956 57 DIVAIAKTGSGKTLGY 72 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~ 72 (547)
-+++.+++|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3678899999999754
No 334
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=54.11 E-value=7.3 Score=34.94 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.3
Q ss_pred hCCCcEEEEcCCCchHHHHH
Q 008956 53 LQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~~ 72 (547)
..++-+++++++|+|||+.+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 45677899999999999743
No 335
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=54.11 E-value=8.2 Score=38.33 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=17.7
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLG 71 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~ 71 (547)
.+..++.|.++ ++-++||||||.+
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceE
Confidence 34566788774 4458999999975
No 336
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=54.08 E-value=8.8 Score=38.86 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=18.8
Q ss_pred HHHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 47 QSWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 47 ~~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
.++..++.|.++ ++-++||||||.+.
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 345567788774 44589999999763
No 337
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=54.07 E-value=8 Score=38.31 Aligned_cols=25 Identities=32% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
++..++.|.++ ++-++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 44566788774 44589999999753
No 338
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=54.06 E-value=12 Score=39.96 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=29.0
Q ss_pred CCCeeEEEEecccccccCCcHHHHHHHHHhCCCCceEEEEecc
Q 008956 162 LNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT 204 (547)
Q Consensus 162 l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~l~~~~q~l~~SAT 204 (547)
+.+.+++++||+-.-+|......+.+.+..+...+ ++++.+-
T Consensus 495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~itH 536 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC-TTFIITQ 536 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTC-EEEEEES
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCC-EEEEEec
Confidence 34567999999998888766777777776665444 4444443
No 339
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=53.97 E-value=8.3 Score=38.20 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=17.8
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
.+..+++|.++ ++-++||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 34456788774 44589999999753
No 340
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=53.75 E-value=8.1 Score=38.16 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=17.5
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLG 71 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~ 71 (547)
.+..+++|.++ ++-++||||||.+
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 34556678774 4458999999976
No 341
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=53.75 E-value=8 Score=38.37 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=19.0
Q ss_pred HHHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 47 QSWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 47 ~~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
.++..+++|.++ ++-++||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 345667788875 44589999999753
No 342
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=53.74 E-value=8.8 Score=37.91 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=18.3
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
.+..+++|.++ ++-++||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 45566788874 44589999999763
No 343
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=53.62 E-value=8.4 Score=33.22 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
+..+++.+++|||||+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456889999999999743
No 344
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=53.62 E-value=9.6 Score=38.54 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=19.7
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
.+..++.|.++ ++-++||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 67778899875 44589999999764
No 345
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=53.39 E-value=8.4 Score=38.23 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=17.5
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLG 71 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~ 71 (547)
++..+++|.++ ++-++||||||.+
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 34556778774 4458999999975
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=53.28 E-value=8.3 Score=34.79 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.8
Q ss_pred hCCCcEEEEcCCCchHHHH
Q 008956 53 LQSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~ 71 (547)
..++-+++++|+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3567788999999999974
No 347
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=53.20 E-value=15 Score=33.72 Aligned_cols=73 Identities=19% Similarity=0.329 Sum_probs=45.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccc-----ccc---CCCC
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-----AAR---GLDI 328 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~-----~~~---GiDi 328 (547)
.+.++||.+++++.+..+++.+++. +.+..++++.... ...........+|+|+|.- +.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 4458999999999999999888753 3344444332111 1111223466789999931 222 4778
Q ss_pred CCccEEEEc
Q 008956 329 KDIRVVVNY 337 (547)
Q Consensus 329 p~v~~VI~~ 337 (547)
.++.+||.-
T Consensus 174 ~~~~~lViD 182 (245)
T 3dkp_A 174 ASVEWLVVD 182 (245)
T ss_dssp TTCCEEEES
T ss_pred ccCcEEEEe
Confidence 888887753
No 348
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=53.09 E-value=9.5 Score=34.39 Aligned_cols=32 Identities=16% Similarity=0.012 Sum_probs=22.2
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCchHHHHHH
Q 008956 41 PTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 41 ~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~l 73 (547)
.++.++... .+..+.-+++.+++|+|||+.+-
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHHH
Confidence 345555553 34556678889999999997543
No 349
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=52.91 E-value=9 Score=38.27 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=18.4
Q ss_pred HHHHHHhCCCcE--EEEcCCCchHHHH
Q 008956 47 QSWPIALQSRDI--VAIAKTGSGKTLG 71 (547)
Q Consensus 47 ~~i~~il~g~~v--lv~a~TGsGKT~~ 71 (547)
.++..++.|.++ ++-++||||||.+
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 345567788874 4458999999975
No 350
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=52.83 E-value=8 Score=38.47 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHHHHhCCCcE--EEEcCCCchHHHH
Q 008956 47 QSWPIALQSRDI--VAIAKTGSGKTLG 71 (547)
Q Consensus 47 ~~i~~il~g~~v--lv~a~TGsGKT~~ 71 (547)
.++..++.|.++ ++-++||||||.+
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceE
Confidence 355667788874 4458999999975
No 351
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=52.71 E-value=8.5 Score=38.08 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=19.6
Q ss_pred HHHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 47 QSWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 47 ~~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
..+..+++|.++ ++-++||||||.+.
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 356677888874 44589999999764
No 352
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=52.67 E-value=9.4 Score=38.05 Aligned_cols=24 Identities=29% Similarity=0.145 Sum_probs=17.7
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLG 71 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~ 71 (547)
.+..++.|.++ ++-++||||||.+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 44556788774 4458999999975
No 353
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=52.66 E-value=8.3 Score=34.50 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCchHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~ 71 (547)
.++-+++++|+|+|||+.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999974
No 354
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=52.28 E-value=8.1 Score=33.14 Aligned_cols=17 Identities=12% Similarity=-0.218 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
.+++.+++|||||+.+-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999997543
No 355
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=52.07 E-value=14 Score=32.32 Aligned_cols=19 Identities=26% Similarity=0.074 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
+..+++.+++|+|||+.+-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4457888999999997543
No 356
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=52.05 E-value=41 Score=34.71 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=46.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecC--------CCC---ChhhHHHhhC--CCcEEEECcHHHHHHHh
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYG--------GAP---KGPQLKDIDR--GVDIVVATPGRLNDILE 156 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g--------~~~---~~~~~~~~~~--~~~IlV~Tp~~L~~~l~ 156 (547)
..++||.|+++..+..+++.+........+.+..++| +.+ ....+..+.. ..+|+|||. .+
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~- 462 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VA- 462 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CT-
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hh-
Confidence 3589999999999999999998875433455555544 222 2233444554 378999993 22
Q ss_pred cCCcCCCCeeEEEEe
Q 008956 157 MRRISLNQVSYLVLD 171 (547)
Q Consensus 157 ~~~~~l~~~~~lVlD 171 (547)
...+++..+++||.=
T Consensus 463 ~~GlDlp~v~~VI~~ 477 (555)
T 3tbk_A 463 DEGIDIAECNLVILY 477 (555)
T ss_dssp TCCEETTSCSEEEEE
T ss_pred hcCCccccCCEEEEe
Confidence 346778888888763
No 357
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=51.75 E-value=7.6 Score=37.98 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
.+++++|||+|||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999997544
No 358
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=51.60 E-value=28 Score=37.31 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=46.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEE
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYL 168 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~l 168 (547)
..++||.|+++.-++.+++.+.+. ++.+..+++. .....+..+.. ..+|+|||. .+. ..+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~-rGiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISE-MGANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGG-TTCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHH-cCcccC-ceEE
Confidence 358999999999999999998876 4567777764 33333444443 588999993 333 356664 6666
Q ss_pred E
Q 008956 169 V 169 (547)
Q Consensus 169 V 169 (547)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 359
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=51.51 E-value=9.3 Score=34.45 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=13.9
Q ss_pred EEEEcCCCchHHHHHHH
Q 008956 58 IVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~ 74 (547)
.++.+++|||||+.+..
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 57889999999986543
No 360
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=51.39 E-value=8.3 Score=38.58 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=18.1
Q ss_pred HHHHHHhCCCcE--EEEcCCCchHHHH
Q 008956 47 QSWPIALQSRDI--VAIAKTGSGKTLG 71 (547)
Q Consensus 47 ~~i~~il~g~~v--lv~a~TGsGKT~~ 71 (547)
..+..++.|.++ ++-++||||||.+
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCccee
Confidence 344556778774 4458999999965
No 361
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=51.17 E-value=9.2 Score=34.00 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~ 72 (547)
.+.-+.+.+|+|+|||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566788899999999743
No 362
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=51.08 E-value=5.2 Score=37.59 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
.+.+++.+|+|+|||+.+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4568999999999997543
No 363
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=50.96 E-value=20 Score=31.11 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
-+++.+++|||||+.+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37788999999997543
No 364
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=50.76 E-value=10 Score=35.54 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=17.5
Q ss_pred hCCCcEEEEcCCCchHHHHHH
Q 008956 53 LQSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~~l 73 (547)
+.++.+++.+++|+|||+.+-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 348899999999999998543
No 365
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=50.67 E-value=22 Score=35.25 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=49.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-----cc-ccCCCCCC
Q 008956 262 PGSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-----VA-ARGLDIKD 330 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-----~~-~~GiDip~ 330 (547)
.+.++||.++++..+..+++.+++. ..+..++++...... .+.+..+..+|+|+|. .+ ...+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4568999999999999988888752 345556666654432 4455667889999993 22 22355666
Q ss_pred ccEEEE
Q 008956 331 IRVVVN 336 (547)
Q Consensus 331 v~~VI~ 336 (547)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777764
No 366
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=50.64 E-value=7.2 Score=38.99 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=15.6
Q ss_pred hCCCcEEEEcCCCchHHHH
Q 008956 53 LQSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~ 71 (547)
..+..+++++|||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3466788999999999974
No 367
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=50.58 E-value=10 Score=37.98 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=18.6
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
++..+++|.++ ++-++||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 45567788774 44589999999764
No 368
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=50.20 E-value=10 Score=38.91 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=17.9
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
++..++.|-++ ++-++||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34456788774 44589999999753
No 369
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=50.09 E-value=10 Score=38.69 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=15.5
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLLPG 76 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~ 76 (547)
.+++++++|+|||+.+...+
T Consensus 101 vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57888999999998655433
No 370
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=49.83 E-value=7.9 Score=34.53 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchHHHH
Q 008956 56 RDIVAIAKTGSGKTLG 71 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~ 71 (547)
+-+++++|.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999963
No 371
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=49.77 E-value=8.6 Score=38.38 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
.+..++.|.++ ++-++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 66778889875 44589999999753
No 372
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=49.63 E-value=20 Score=37.36 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
+.+++|.+.||||||.+.-
T Consensus 167 ~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp SCSEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997543
No 373
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=49.58 E-value=17 Score=34.74 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+++.+|+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999997544
No 374
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=49.50 E-value=23 Score=33.96 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=45.2
Q ss_pred CeEEEEcCChHHHHHHHHHHhc------ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcccc------c-cCCCCCC
Q 008956 264 SKIIVFCSTKKMCDQLARNLTR------QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVA------A-RGLDIKD 330 (547)
Q Consensus 264 ~k~IVF~~s~~~~~~l~~~L~~------~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~~------~-~GiDip~ 330 (547)
.++||.+++++.+..+++.+++ .+.+..++++...... .....+|||+|.-. . ..+++..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 4799999999999988777654 2456666665542211 13456899999421 1 3567888
Q ss_pred ccEEEEcC
Q 008956 331 IRVVVNYD 338 (547)
Q Consensus 331 v~~VI~~d 338 (547)
+.+||.-.
T Consensus 236 l~~lVlDE 243 (300)
T 3fmo_B 236 IKVFVLDE 243 (300)
T ss_dssp CSEEEETT
T ss_pred ceEEEEeC
Confidence 88887543
No 375
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=49.50 E-value=15 Score=35.74 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=22.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
+++.+..|.|||+++...++..... +.++|+|-.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~-------G~rVLlvD~ 50 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS-------GKKTLVIST 50 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC-------CCcEEEEeC
Confidence 3455899999999776655554433 456766654
No 376
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=49.47 E-value=5.8 Score=34.58 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~ 72 (547)
.+.-+.+++|+|||||+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3556788999999999743
No 377
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.32 E-value=17 Score=37.41 Aligned_cols=19 Identities=32% Similarity=0.268 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
..++|+.+|+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4589999999999997554
No 378
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=49.25 E-value=6.9 Score=33.95 Aligned_cols=18 Identities=28% Similarity=0.267 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
+..+++.+++|||||+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456788999999999754
No 379
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=49.15 E-value=18 Score=32.61 Aligned_cols=33 Identities=21% Similarity=0.041 Sum_probs=21.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 59 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 59 lv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
+....+|.|||++++-.+...... +.+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~-------G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAA-------GYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHT-------TCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC-------CCCEEEEcc
Confidence 334578999998776544443333 557887654
No 380
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=48.84 E-value=11 Score=34.23 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.5
Q ss_pred hCCCcEEEEcCCCchHHHH
Q 008956 53 LQSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~ 71 (547)
..++-+.+++|+|+|||+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567788999999999974
No 381
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=48.80 E-value=11 Score=33.72 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~ 72 (547)
.+.-+++.+++|||||+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567888999999999753
No 382
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=48.77 E-value=11 Score=33.12 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=13.3
Q ss_pred CcEEEEcCCCchHHHH
Q 008956 56 RDIVAIAKTGSGKTLG 71 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~ 71 (547)
+-+.+.+|+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4477899999999974
No 383
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=48.58 E-value=10 Score=37.86 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=17.9
Q ss_pred HHHHHhCCCcE--EEEcCCCchHHHH
Q 008956 48 SWPIALQSRDI--VAIAKTGSGKTLG 71 (547)
Q Consensus 48 ~i~~il~g~~v--lv~a~TGsGKT~~ 71 (547)
.+..+++|.++ ++-++||||||.+
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 45566788774 4458999999975
No 384
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=48.57 E-value=18 Score=34.09 Aligned_cols=52 Identities=17% Similarity=-0.022 Sum_probs=31.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhc
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 114 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~ 114 (547)
+..+++.+.+|+|||+.++--+...+.+ +-++++++-. +-..++...+..++
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~-------Ge~~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKS-------DNLVGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHT-------TCEEEEEECS-SCHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHC-------CCcEEEEEEe-CCHHHHHHHHHHcC
Confidence 3557777678888874433333344443 4578887754 44566666666664
No 385
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=48.53 E-value=9.3 Score=37.64 Aligned_cols=17 Identities=41% Similarity=0.331 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
-++|++|||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47788999999997554
No 386
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.38 E-value=13 Score=37.79 Aligned_cols=26 Identities=38% Similarity=0.413 Sum_probs=20.1
Q ss_pred HHHHHHhCCCcE--EEEcCCCchHHHHH
Q 008956 47 QSWPIALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 47 ~~i~~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
..+..++.|.++ ++-++||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 467788899875 44589999999753
No 387
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=48.33 E-value=8.7 Score=34.10 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=22.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEA 110 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~ 110 (547)
++|.+++|||||.-+.- +... +.++++++.....-..+.+.+
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~~------~~~~~yiaT~~~~d~e~~~rI 43 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIGD------APQVLYIATSQILDDEMAARI 43 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHCS------CSSEEEEECCCC------CHH
T ss_pred EEEECCCCCcHHHHHHH-----HHhc------CCCeEEEecCCCCCHHHHHHH
Confidence 68899999999964432 1111 235788887543333333333
No 388
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=48.02 E-value=18 Score=34.85 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
+.-+.+.+|+|+|||+..
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 345677899999999743
No 389
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=47.79 E-value=9.2 Score=38.41 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=21.6
Q ss_pred CcHHHHHHHH--------HHhCCCcE--EEEcCCCchHHHHH
Q 008956 41 PTPIQAQSWP--------IALQSRDI--VAIAKTGSGKTLGY 72 (547)
Q Consensus 41 ~~~~Q~~~i~--------~il~g~~v--lv~a~TGsGKT~~~ 72 (547)
+..-|.+++. .++.|.++ ++-++||||||.+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 3445666654 35678774 44589999999753
No 390
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.50 E-value=12 Score=33.70 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=15.7
Q ss_pred HHhCCCcEEEEcCCCchHHHH
Q 008956 51 IALQSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 51 ~il~g~~vlv~a~TGsGKT~~ 71 (547)
.+..|.-+.+.+|+|+|||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 556677788999999999974
No 391
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=47.46 E-value=8.1 Score=33.95 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
.-+++.+++|||||+.+-
T Consensus 6 ~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457888999999998543
No 392
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=47.26 E-value=2.1e+02 Score=27.80 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHCCCC
Q 008956 23 TGFPPELLREVHNAGFS 39 (547)
Q Consensus 23 ~~l~~~l~~~l~~~g~~ 39 (547)
.++++.+.+.+....+.
T Consensus 20 ~~~~~~v~~a~~~~~~~ 36 (416)
T 3isl_A 20 VEVDPRVLRVMSTPVVG 36 (416)
T ss_dssp CCCCHHHHHHTTSCCCC
T ss_pred cCcCHHHHHHhcccCCC
Confidence 44788888888765433
No 393
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=47.25 E-value=19 Score=45.36 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHH----HHHhCCCcEEEEcCCCchHHHHHHH
Q 008956 25 FPPELLREVHNAGFSSPTPIQAQSW----PIALQSRDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 25 l~~~l~~~l~~~g~~~~~~~Q~~~i----~~il~g~~vlv~a~TGsGKT~~~l~ 74 (547)
+.+.+.+.+...++ .+++.+..-+ ..+...+.+++++|||+|||.++-+
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 34556666667776 4556553333 3344567899999999999987643
No 394
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=47.14 E-value=24 Score=27.88 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCeEEEEcCChHHHHHHHHHHhcc-cceEEEcCCCC
Q 008956 253 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKS 297 (547)
Q Consensus 253 l~~~l~~~~~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~ihg~~~ 297 (547)
+...+.....+.++||||.+-..+...+..|++. +.+..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4445555667789999999988888888988764 77788887654
No 395
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=47.10 E-value=18 Score=35.73 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=22.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
+++.+..|.|||+++...++..... +.++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~-------G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK-------GLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS-------SCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC-------CCeEEEEe
Confidence 4556899999999776555544433 45677666
No 396
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=46.92 E-value=12 Score=32.47 Aligned_cols=17 Identities=41% Similarity=0.352 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
.+++.+++|||||+.+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999997544
No 397
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=46.70 E-value=18 Score=35.38 Aligned_cols=33 Identities=30% Similarity=0.229 Sum_probs=22.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
+++.+..|.|||+++...++..... +.+++++-
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~-------G~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKV-------RSSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTS-------SSCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC-------CCeEEEEE
Confidence 4556899999998776555544433 55777763
No 398
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=46.33 E-value=12 Score=32.20 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
+++++.+.+|||||+++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568899999999998654
No 399
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=46.32 E-value=8 Score=33.95 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
.-+++.+++|||||+.+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457888999999998653
No 400
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=46.32 E-value=8.7 Score=33.58 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
+..+++.+++|||||+.+-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457889999999998543
No 401
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=46.32 E-value=13 Score=36.24 Aligned_cols=14 Identities=29% Similarity=0.230 Sum_probs=12.1
Q ss_pred EEEEcCCCchHHHH
Q 008956 58 IVAIAKTGSGKTLG 71 (547)
Q Consensus 58 vlv~a~TGsGKT~~ 71 (547)
+++.++.|+|||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67889999999973
No 402
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=46.20 E-value=10 Score=38.33 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~ 74 (547)
-++|.+|||+|||..+..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 367789999999975543
No 403
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=45.97 E-value=46 Score=33.98 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
.+++++.+|+|+|||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999754
No 404
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=45.92 E-value=7.4 Score=42.28 Aligned_cols=77 Identities=9% Similarity=0.185 Sum_probs=49.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHh--ccCCceEEEEecCC--------CCChh---hHHHhhC-CCcEEEECcHHHHHHH
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKF--GKSSRISCTCLYGG--------APKGP---QLKDIDR-GVDIVVATPGRLNDIL 155 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~--~~~~~i~~~~~~g~--------~~~~~---~~~~~~~-~~~IlV~Tp~~L~~~l 155 (547)
+.++||.|+++..++.+++.+... ....++.+..++|+ ....+ .+..+.. ..+|+|+|. +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 458999999999999999988765 22235777788887 44333 3344444 478999993 2
Q ss_pred hcCCcCCCCeeEEEEec
Q 008956 156 EMRRISLNQVSYLVLDE 172 (547)
Q Consensus 156 ~~~~~~l~~~~~lVlDE 172 (547)
....+++.++++||.=+
T Consensus 474 ~~~GIDip~v~~VI~~d 490 (699)
T 4gl2_A 474 AEEGLDIKECNIVIRYG 490 (699)
T ss_dssp CCTTSCCCSCCCCEEES
T ss_pred cccCCccccCCEEEEeC
Confidence 23478888888888433
No 405
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=45.62 E-value=30 Score=35.92 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=29.2
Q ss_pred CccCCccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhC------CCcEEEEcCCCchHHHHH
Q 008956 16 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQ------SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 16 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~------g~~vlv~a~TGsGKT~~~ 72 (547)
+...|+++.-.++....+...- ....-+.++. .+.+++.+|+|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv-------~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIV-------EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHH-------HHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHH-------HHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 3457887776667666665320 0000011111 245899999999999743
No 406
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=45.49 E-value=25 Score=37.14 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHh
Q 008956 55 SRDIVAIAKTGSGKTLGYLLPGFIHL 80 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~~~l~~l 80 (547)
..+++|.+.||||||.+.-..++..+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 36799999999999975443333333
No 407
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=45.41 E-value=19 Score=34.78 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHHH
Q 008956 57 DIVAIAKTGSGKTLGY 72 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~ 72 (547)
-+.+.+++|+|||+..
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4667899999999743
No 408
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=45.25 E-value=11 Score=33.57 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=20.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCchHHHHH
Q 008956 40 SPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 40 ~~~~~Q~~~i~~il~g~~vlv~a~TGsGKT~~~ 72 (547)
..+..+...+ ....+.-+++.+++|+|||+.+
T Consensus 11 ~~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 11 SVEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred ccCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 3444444332 2234566788899999999754
No 409
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=45.21 E-value=19 Score=32.86 Aligned_cols=32 Identities=19% Similarity=0.022 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
+.+.+.-|.|||+.++..+...... +.++|+|
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~-------g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD-------YDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT-------CSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC-------CCeEEEE
Confidence 4557899999999776554444322 4567665
No 410
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=45.09 E-value=12 Score=33.35 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
.-+++.+++|||||+.+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997543
No 411
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=44.93 E-value=13 Score=36.15 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
...+++.+|+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999997543
No 412
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=44.71 E-value=12 Score=36.51 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~ 72 (547)
..+++.+|+|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57899999999999753
No 413
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=44.68 E-value=1.6e+02 Score=25.73 Aligned_cols=127 Identities=13% Similarity=0.010 Sum_probs=48.9
Q ss_pred hCCCcEEEEcCCCchHHHHHHHHHHHHhhhcc------CCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecC
Q 008956 53 LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCR------NDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYG 126 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~------~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g 126 (547)
+.|..+-+....|-|=|+.+.+|+........ .....+.++|||-........+...+..++.. .+
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~---~v----- 89 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVS---EV----- 89 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCS---EE-----
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ee-----
Confidence 34556777788899988888888643321111 11122457888888877766666666554210 11
Q ss_pred CCCChhhHHHhhCCCcEEEECcHHHHHHHhcC--------CcCCCCeeEEEEecccccccCCcHHHHHHHHHh---CCCC
Q 008956 127 GAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--------RISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE---VPAR 195 (547)
Q Consensus 127 ~~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~--------~~~l~~~~~lVlDEaH~ll~~g~~~~i~~i~~~---l~~~ 195 (547)
..+.+....+..+... ...-..+++||+|= .|-++.-...+..+... ....
T Consensus 90 ----------------~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~~ 151 (206)
T 3mm4_A 90 ----------------EQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGVR 151 (206)
T ss_dssp ----------------EEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTCC
T ss_pred ----------------eeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCCC
Confidence 1222333344444321 12223578899983 23444333344444332 2456
Q ss_pred ceEEEEeccC
Q 008956 196 RQTLMYTATW 205 (547)
Q Consensus 196 ~q~l~~SAT~ 205 (547)
..+|++|+..
T Consensus 152 ~piI~ls~~~ 161 (206)
T 3mm4_A 152 TPIIAVSGHD 161 (206)
T ss_dssp CCEEEEESSC
T ss_pred CcEEEEECCC
Confidence 6789999875
No 414
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=44.30 E-value=46 Score=36.74 Aligned_cols=70 Identities=13% Similarity=0.244 Sum_probs=45.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHhc-----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc-cc----ccC-C-CCCC
Q 008956 263 GSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD-VA----ARG-L-DIKD 330 (547)
Q Consensus 263 ~~k~IVF~~s~~~~~~l~~~L~~-----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~-~~----~~G-i-Dip~ 330 (547)
+.++||.|+++..+..+.+.+++ .+.+..+||+.+...+...+. ...+|+|+|. .+ ..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 67899999999999888887765 467899999987655433222 2578999993 22 222 3 4556
Q ss_pred ccEEEE
Q 008956 331 IRVVVN 336 (547)
Q Consensus 331 v~~VI~ 336 (547)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 415
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=44.30 E-value=26 Score=35.92 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=46.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCChhhHHHhhC-CCcEEEECcHHHHHHHhcCCcCCCCeeEE
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR-GVDIVVATPGRLNDILEMRRISLNQVSYL 168 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~l 168 (547)
+.++||.||++.-++.+++.+.+. ++.+..+.+. .....+..+.. ..+|+|||. .+. ..+++.. ++|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~-~R~~~~~~f~~g~~~iLVaT~-----v~~-~GiDip~-~~V 257 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISE-MGANFGA-SRV 257 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTT-CCCCCGGGSSSCCCSEEEESS-----CC----CCCSC-SEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHH-HHHHHHhhccCCCceEEEECC-----hHH-hCeecCC-CEE
Confidence 458999999999999999988876 4666777764 33444455544 478999993 222 2566666 555
Q ss_pred E
Q 008956 169 V 169 (547)
Q Consensus 169 V 169 (547)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 4
No 416
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=44.30 E-value=25 Score=30.72 Aligned_cols=15 Identities=27% Similarity=0.067 Sum_probs=12.3
Q ss_pred cEEEEcCCCchHHHH
Q 008956 57 DIVAIAKTGSGKTLG 71 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~ 71 (547)
-+.+.++.|||||+.
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367789999999974
No 417
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=44.16 E-value=15 Score=33.21 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 008956 58 IVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~ 74 (547)
+++.+|+||||++.+-.
T Consensus 3 Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67889999999986543
No 418
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=44.09 E-value=31 Score=39.04 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=42.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEec--------CCCC---ChhhHHHhhC--CCcEEEECcHHHHHHHh
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLY--------GGAP---KGPQLKDIDR--GVDIVVATPGRLNDILE 156 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~--------g~~~---~~~~~~~~~~--~~~IlV~Tp~~L~~~l~ 156 (547)
+.++||.|+++..+..+.+.+.+.....++++..+. ++.+ ....+..+.. ..+|+|+|- .+
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~- 704 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA- 704 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C--
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----ch-
Confidence 569999999999999999999886322233333332 3232 2233445554 378999993 22
Q ss_pred cCCcCCCCeeEEEEecc
Q 008956 157 MRRISLNQVSYLVLDEA 173 (547)
Q Consensus 157 ~~~~~l~~~~~lVlDEa 173 (547)
...+++..+++||+=+.
T Consensus 705 ~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 705 DEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp -----CCCCSEEEEESC
T ss_pred hcCCcchhCCEEEEeCC
Confidence 33778889999987554
No 419
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=44.08 E-value=13 Score=32.66 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHHH
Q 008956 57 DIVAIAKTGSGKTLGY 72 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~ 72 (547)
-+++.+++|+|||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3678899999999743
No 420
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=43.94 E-value=14 Score=32.35 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCchHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l 73 (547)
.+..+++.+++|||||+.+-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45668889999999998543
No 421
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=43.84 E-value=1.9e+02 Score=28.06 Aligned_cols=15 Identities=20% Similarity=0.394 Sum_probs=11.3
Q ss_pred cCCCCHHHHHHHHHC
Q 008956 22 ATGFPPELLREVHNA 36 (547)
Q Consensus 22 ~~~l~~~l~~~l~~~ 36 (547)
..++++++++++...
T Consensus 21 p~~~~~~v~~a~~~~ 35 (411)
T 3nnk_A 21 PINADPRVLRAMSSQ 35 (411)
T ss_dssp CCCCCHHHHHHHTSC
T ss_pred CCCCCHHHHHHhhcc
Confidence 345789999998764
No 422
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=43.70 E-value=8.8 Score=36.78 Aligned_cols=16 Identities=31% Similarity=0.245 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHHH
Q 008956 57 DIVAIAKTGSGKTLGY 72 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~ 72 (547)
-+++++++|||||+.+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999754
No 423
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=43.56 E-value=11 Score=34.43 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.1
Q ss_pred hCCCcEEEEcCCCchHHHH
Q 008956 53 LQSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 53 l~g~~vlv~a~TGsGKT~~ 71 (547)
..|+-+++++|.|+|||+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3566788899999999974
No 424
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=43.51 E-value=20 Score=38.17 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=23.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 56 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
+-+++.+..|.|||+++...++..... +.++|+|.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~-------G~rVLlvd 43 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQ-------GKRVLLVS 43 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHC-------CCcEEEEE
Confidence 346667999999999777655555433 44666644
No 425
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=43.28 E-value=93 Score=30.26 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=36.2
Q ss_pred cCCccCCCCHHHHHHHHHC---CCCCCcHHHHHH---HHHHhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCC
Q 008956 18 MSFDATGFPPELLREVHNA---GFSSPTPIQAQS---WPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGP 91 (547)
Q Consensus 18 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~---i~~il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~ 91 (547)
.+|....+++++++++... ++..+.+...+. +...+..+++++. ++| |.+ +..++..+.. ..+.
T Consensus 11 i~~~~p~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~---~~g-t~a-l~~~~~~~~~-----~~gd 80 (393)
T 1mdo_A 11 LPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAV---SSA-TAG-MHIALMALGI-----GEGD 80 (393)
T ss_dssp BCSCCCCCCHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHCCSEEEEE---SCH-HHH-HHHHHHHTTC-----CTTC
T ss_pred cccCCCCCCHHHHHHHHHHHhcCCcCCChHHHHHHHHHHHHhCCCcEEEe---cCh-HHH-HHHHHHHcCC-----CCCC
Confidence 3444445777777766432 333344443333 3333444555554 345 543 3333333311 1245
Q ss_pred EEEEEcCcHHH
Q 008956 92 TVLVLSPTREL 102 (547)
Q Consensus 92 ~vLil~Ptr~L 102 (547)
.+|+..|+-.-
T Consensus 81 ~Vl~~~~~~~~ 91 (393)
T 1mdo_A 81 EVITPSMTWVS 91 (393)
T ss_dssp EEEEESSSCHH
T ss_pred EEEeCCCccHh
Confidence 78888887543
No 426
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=43.14 E-value=15 Score=31.52 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
+.+++.+++|||||+.+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357889999999998543
No 427
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=43.12 E-value=19 Score=38.47 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=20.3
Q ss_pred HHHHHHhCCCcEEEEcCCCchHHHHH
Q 008956 47 QSWPIALQSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 47 ~~i~~il~g~~vlv~a~TGsGKT~~~ 72 (547)
.+-..+..+..+++.+|+|+|||+.+
T Consensus 52 ~l~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 52 VIKTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred hccccccCCCEEEEEeCCCCCHHHHH
Confidence 33345667889999999999999754
No 428
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=43.06 E-value=15 Score=36.49 Aligned_cols=22 Identities=32% Similarity=0.244 Sum_probs=15.8
Q ss_pred HHh-CCCc--EEEEcCCCchHHHHH
Q 008956 51 IAL-QSRD--IVAIAKTGSGKTLGY 72 (547)
Q Consensus 51 ~il-~g~~--vlv~a~TGsGKT~~~ 72 (547)
.++ .|.+ +++-++||||||.+.
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred hhccCCceeEEEeeCCCCCCCCEEE
Confidence 344 3776 466699999999753
No 429
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=43.00 E-value=13 Score=33.33 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
.+++.+++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998654
No 430
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=42.52 E-value=16 Score=31.78 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+++.+++|||||+.+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358899999999998653
No 431
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=42.40 E-value=15 Score=32.42 Aligned_cols=19 Identities=32% Similarity=0.155 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~ 72 (547)
.+..+++.+++|||||+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456888999999999854
No 432
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=42.28 E-value=16 Score=32.46 Aligned_cols=55 Identities=13% Similarity=0.226 Sum_probs=32.9
Q ss_pred CCCeEEEEcCChHHHHH-HHHHHhc----ccceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEcc
Q 008956 262 PGSKIIVFCSTKKMCDQ-LARNLTR----QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 320 (547)
Q Consensus 262 ~~~k~IVF~~s~~~~~~-l~~~L~~----~~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~ 320 (547)
...++||+|++...++. +.+.+.+ .+.+..++++.....+...+. ...+|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 35689999999988877 5555543 356777777654322211111 1467999984
No 433
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=42.11 E-value=12 Score=39.91 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHH
Q 008956 57 DIVAIAKTGSGKTLG 71 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~ 71 (547)
++|+.+|+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999963
No 434
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=42.07 E-value=14 Score=33.20 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
.+++.+++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998543
No 435
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.98 E-value=41 Score=43.10 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=32.6
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHH----HhCCCcEEEEcCCCchHHHHHHH
Q 008956 26 PPELLREVHNAGFSSPTPIQAQSWPI----ALQSRDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 26 ~~~l~~~l~~~g~~~~~~~Q~~~i~~----il~g~~vlv~a~TGsGKT~~~l~ 74 (547)
...+.+.+..+++ .+.+.|..-+-. +...+.+++++|||+|||.++-+
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 4556666777787 555555443322 34467799999999999987653
No 436
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=41.79 E-value=14 Score=32.20 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
-+++.+++|||||+.+-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47788999999998543
No 437
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=41.73 E-value=10 Score=33.74 Aligned_cols=19 Identities=26% Similarity=0.097 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
+.-+++.+++|||||+.+-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4557889999999998543
No 438
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=41.71 E-value=25 Score=32.62 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=20.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 59 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 59 lv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
++....|.|||++++..+...... +.+++++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~-------g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQL-------GHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhC-------CCcEEEEE
Confidence 445788999998766544444332 44677663
No 439
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=41.65 E-value=17 Score=33.23 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
+-+++.+|+||||++.+-
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456778999999998654
No 440
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=41.58 E-value=11 Score=32.82 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
+..+++.+++|||||+.+
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456788899999999754
No 441
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=41.56 E-value=22 Score=32.35 Aligned_cols=30 Identities=30% Similarity=0.251 Sum_probs=19.2
Q ss_pred EcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 61 IAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 61 ~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
....|.|||+.++..+...... +.+++++=
T Consensus 9 s~kgGvGKTt~a~~LA~~la~~-------g~~VlliD 38 (237)
T 1g3q_A 9 SGKGGTGKTTVTANLSVALGDR-------GRKVLAVD 38 (237)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHhc-------CCeEEEEe
Confidence 4688999998766544443332 44677664
No 442
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=41.48 E-value=22 Score=33.18 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=19.2
Q ss_pred EcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEc
Q 008956 61 IAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLS 97 (547)
Q Consensus 61 ~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~ 97 (547)
....|.|||+++...+...... +.++|+|=
T Consensus 25 s~kGGvGKTT~a~nLA~~la~~-------G~~VlliD 54 (262)
T 2ph1_A 25 SGKGGVGKSTVTALLAVHYARQ-------GKKVGILD 54 (262)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHT-------TCCEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHC-------CCeEEEEe
Confidence 3688999998766544444332 45677753
No 443
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=41.40 E-value=23 Score=34.73 Aligned_cols=35 Identities=31% Similarity=0.170 Sum_probs=23.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcC
Q 008956 57 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~P 98 (547)
-+++.+.-|.|||+++...++..... +.++|++--
T Consensus 18 i~~~sgkGGvGKTt~a~~lA~~la~~-------g~~vllid~ 52 (334)
T 3iqw_A 18 WIFVGGKGGVGKTTTSCSLAIQLAKV-------RRSVLLLST 52 (334)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTS-------SSCEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhC-------CCcEEEEEC
Confidence 35566899999998776555544332 556766653
No 444
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=41.37 E-value=47 Score=35.95 Aligned_cols=73 Identities=15% Similarity=0.234 Sum_probs=53.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCCh---hhHHHhhC---CCcEEEECcHHHHHHHhcCCcCCCCee
Q 008956 93 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKG---PQLKDIDR---GVDIVVATPGRLNDILEMRRISLNQVS 166 (547)
Q Consensus 93 vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~---~~~~~~~~---~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 166 (547)
.+|+|+++.-++++++.+.+. ++.+..++|+.... .+...+.. ..+|+|||. .+ ...+++ ++.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~-e~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AI-GMGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GG-GSSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HH-HCCcCc-Ccc
Confidence 366688888888888888774 46778899988765 44555554 379999993 33 346778 899
Q ss_pred EEEEeccccc
Q 008956 167 YLVLDEADRM 176 (547)
Q Consensus 167 ~lVlDEaH~l 176 (547)
+||+-.+.+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9999888664
No 445
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=41.28 E-value=16 Score=32.96 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
+..+++.+++|||||+.+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3468889999999998543
No 446
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=41.19 E-value=19 Score=30.55 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=12.7
Q ss_pred cEEEEcCCCchHHHH
Q 008956 57 DIVAIAKTGSGKTLG 71 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~ 71 (547)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368889999999975
No 447
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=41.14 E-value=20 Score=40.85 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=36.1
Q ss_pred ccCCccCC-C-CHHHHHHHHHCCCCCCcH----HHHHHHHHHhC---CCcEEEEcCCCchHHHHHHH
Q 008956 17 FMSFDATG-F-PPELLREVHNAGFSSPTP----IQAQSWPIALQ---SRDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 17 ~~~f~~~~-l-~~~l~~~l~~~g~~~~~~----~Q~~~i~~il~---g~~vlv~a~TGsGKT~~~l~ 74 (547)
+++|..++ + .++.++....+....+-| +=..|...++. .+.+||.+++|+|||.+.-+
T Consensus 97 VNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~ 163 (1052)
T 4anj_A 97 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 163 (1052)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH
T ss_pred ECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH
Confidence 34555554 3 677777776665444333 33444444443 35689999999999987644
No 448
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=40.97 E-value=17 Score=31.62 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=12.7
Q ss_pred cEEEEcCCCchHHHH
Q 008956 57 DIVAIAKTGSGKTLG 71 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~ 71 (547)
-.++++++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 467889999999974
No 449
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=40.95 E-value=1.3e+02 Score=34.59 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=25.5
Q ss_pred eEEEEecCCCCChhhHHHhhCCCcEEEECcHHHH
Q 008956 119 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLN 152 (547)
Q Consensus 119 i~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~L~ 152 (547)
-++..+..+....+++..+..++.|||+|-....
T Consensus 244 KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277 (1221)
T ss_dssp SSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHH
T ss_pred CCEEEEEeCcChHHHHHhhCCCeEEEEeccChHH
Confidence 3455666667777778777889999999987654
No 450
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=40.91 E-value=10 Score=34.71 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=11.3
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~ 72 (547)
.+.-+.+.+|+|+|||+..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566788999999999743
No 451
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=40.90 E-value=12 Score=31.97 Aligned_cols=17 Identities=29% Similarity=0.057 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
.+++.+++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47889999999997543
No 452
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=40.72 E-value=24 Score=34.96 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHHH
Q 008956 57 DIVAIAKTGSGKTLGY 72 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~ 72 (547)
-+.+++++|+|||+..
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4677899999999843
No 453
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=40.60 E-value=17 Score=32.91 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+++.+++|||||+.+-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568899999999998544
No 454
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=40.56 E-value=12 Score=33.19 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 008956 57 DIVAIAKTGSGKTLGY 72 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~ 72 (547)
-+++.+++|||||+.+
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999754
No 455
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=40.53 E-value=15 Score=32.53 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+++.+++|||||+.+-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457888999999998543
No 456
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=40.51 E-value=18 Score=33.44 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
...+++.+++|||||+.+-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3468889999999998654
No 457
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=40.45 E-value=15 Score=33.00 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=21.6
Q ss_pred eeEEEEecccccccCC--cHHHHHHHHHhC----CCCceEEEEecc
Q 008956 165 VSYLVLDEADRMLDMG--FEPQIRKIVKEV----PARRQTLMYTAT 204 (547)
Q Consensus 165 ~~~lVlDEaH~ll~~g--~~~~i~~i~~~l----~~~~q~l~~SAT 204 (547)
-.+|||||||.+.... ..+.+ .++..+ ....++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~-rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIP-ENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCC-HHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhH-HHHHHHHhcCcCCeEEEEECCC
Confidence 5689999999984321 11111 222332 234577777766
No 458
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=46.57 E-value=5.9 Score=35.48 Aligned_cols=11 Identities=9% Similarity=0.129 Sum_probs=4.2
Q ss_pred hHHHHHHHHHH
Q 008956 273 KKMCDQLARNL 283 (547)
Q Consensus 273 ~~~~~~l~~~L 283 (547)
.++++...+.|
T Consensus 67 ~rEIEma~KvL 77 (215)
T 2l6f_A 67 HREIEMAQKLL 77 (215)
Confidence 33344333333
No 459
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=40.36 E-value=15 Score=32.28 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
..-+++.+++|||||+.+-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568889999999997543
No 460
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=40.34 E-value=2.6e+02 Score=26.99 Aligned_cols=105 Identities=9% Similarity=-0.002 Sum_probs=48.6
Q ss_pred HhCCCcEEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecCCCCCh
Q 008956 52 ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKG 131 (547)
Q Consensus 52 il~g~~vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g~~~~~ 131 (547)
++...+.++. ++| |.+..+ ++..+.. .+..+|+..|+-.-... .+.......+..+..+-- .+.+
T Consensus 64 ~~~~~~~i~~---~sG-t~a~~~-~~~~~~~------~g~~vl~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~d~~ 128 (386)
T 1cs1_A 64 LEGGAGAVLT---NTG-MSAIHL-VTTVFLK------PGDLLVAPHDCYGGSYR---LFDSLAKRGCYRVLFVDQ-GDEQ 128 (386)
T ss_dssp HHTCSEEEEE---SSH-HHHHHH-HHHHHCC------TTCEEEEETTCCHHHHH---HHHHHHTTTSCEEEEECT-TCHH
T ss_pred HhCCCcEEEe---CCH-HHHHHH-HHHHHhC------CCCEEEEecCCcHhHHH---HHHHHHHhcCCEEEEeCC-CCHH
Confidence 3434455554 567 754333 3333321 24578888887432222 222222333454443322 1222
Q ss_pred hhHHHhhCCCcE-EEECcH----------HHHHHHhcCCcCCCCeeEEEEecccccc
Q 008956 132 PQLKDIDRGVDI-VVATPG----------RLNDILEMRRISLNQVSYLVLDEADRML 177 (547)
Q Consensus 132 ~~~~~~~~~~~I-lV~Tp~----------~L~~~l~~~~~~l~~~~~lVlDEaH~ll 177 (547)
.....+.....+ ++++|. .+.+++.+.. -+||+||+|...
T Consensus 129 ~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~------~~li~De~~~~~ 179 (386)
T 1cs1_A 129 ALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVG------AVSVVDNTFLSP 179 (386)
T ss_dssp HHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTT------CEEEEECTTTCT
T ss_pred HHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcC------CEEEEECCCccc
Confidence 223334444444 444442 2344444332 269999999754
No 461
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=40.10 E-value=15 Score=33.41 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
...+++.+++|||||+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356888999999999854
No 462
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=40.04 E-value=20 Score=31.66 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=20.3
Q ss_pred CcEEEECcHHHHHHHhcCCcCCCCeeEEEEecccc
Q 008956 141 VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 175 (547)
Q Consensus 141 ~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEaH~ 175 (547)
.+++-+.++.|...+..- ..++++||||=.-.
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~~ 86 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAGS 86 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCSS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCCC
Confidence 456666666666665531 23578999997654
No 463
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=40.00 E-value=22 Score=38.48 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=44.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccCCceEEEEecC--------CCCCh---hhHHHhhC--CCcEEEECcHHHHHHHh
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYG--------GAPKG---PQLKDIDR--GVDIVVATPGRLNDILE 156 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~~~i~~~~~~g--------~~~~~---~~~~~~~~--~~~IlV~Tp~~L~~~l~ 156 (547)
+.++||.|+++.-+..+++.+........+.+..++| +.+.. ..+..+.. ..+|+|+|. +.
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------v~ 471 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------VA 471 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------SS
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------hh
Confidence 4589999999999999999998865433456666644 33322 23344443 478999993 22
Q ss_pred cCCcCCCCeeEEEEeccc
Q 008956 157 MRRISLNQVSYLVLDEAD 174 (547)
Q Consensus 157 ~~~~~l~~~~~lVlDEaH 174 (547)
...+++.++++||.-+..
T Consensus 472 ~~GiDip~v~~VI~~d~p 489 (696)
T 2ykg_A 472 DEGIDIAQCNLVILYEYV 489 (696)
T ss_dssp CCC---CCCSEEEEESCC
T ss_pred hcCCcCccCCEEEEeCCC
Confidence 347788889988865443
No 464
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=39.85 E-value=41 Score=33.88 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=8.3
Q ss_pred EEEEeccccc
Q 008956 167 YLVLDEADRM 176 (547)
Q Consensus 167 ~lVlDEaH~l 176 (547)
+||+||+|-.
T Consensus 197 ~livD~a~~~ 206 (409)
T 3jzl_A 197 IVFVDNCYGE 206 (409)
T ss_dssp EEEEECTTCT
T ss_pred EEEEeCCccc
Confidence 6899999854
No 465
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=39.70 E-value=14 Score=33.02 Aligned_cols=20 Identities=20% Similarity=0.079 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCchHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l 73 (547)
.+.-+++.++.|||||+.+-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34568889999999998543
No 466
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=39.66 E-value=24 Score=32.58 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=18.8
Q ss_pred EcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 61 IAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 61 ~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
....|.|||+.++..+...... +.++|+|
T Consensus 9 s~kgGvGKTt~a~~LA~~la~~-------g~~Vlli 37 (260)
T 3q9l_A 9 SGKGGVGKTTSSAAIATGLAQK-------GKKTVVI 37 (260)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHT-------TCCEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHhC-------CCcEEEE
Confidence 4688999998766555444333 4466665
No 467
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=39.55 E-value=13 Score=33.19 Aligned_cols=15 Identities=33% Similarity=0.222 Sum_probs=12.6
Q ss_pred EEEEcCCCchHHHHH
Q 008956 58 IVAIAKTGSGKTLGY 72 (547)
Q Consensus 58 vlv~a~TGsGKT~~~ 72 (547)
+.+.+++|||||+.+
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999754
No 468
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=39.51 E-value=11 Score=32.76 Aligned_cols=19 Identities=32% Similarity=0.069 Sum_probs=11.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
..-+++.+++|||||+.+-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568889999999998543
No 469
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=39.43 E-value=25 Score=34.66 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=23.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh--hhccCCCCCCCEEEEEcC
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHL--KRCRNDPRLGPTVLVLSP 98 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l--~~~~~~~~~~~~vLil~P 98 (547)
+++.+..|.|||+++...++... .. +.++|+|-.
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~~~~-------G~rVLLvD~ 56 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMALSQP-------NKQFLLIST 56 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCT-------TSCEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhcC-------CCeEEEEEC
Confidence 45568999999997776555544 33 557777654
No 470
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=39.34 E-value=8 Score=34.65 Aligned_cols=19 Identities=32% Similarity=0.045 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCchHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~ 72 (547)
.+.-+.+.+++|||||+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3445778899999999743
No 471
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=39.34 E-value=13 Score=32.49 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=12.8
Q ss_pred cEEEEcCCCchHHHHH
Q 008956 57 DIVAIAKTGSGKTLGY 72 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~ 72 (547)
-+.+++++|||||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999743
No 472
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=39.20 E-value=17 Score=31.85 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.7
Q ss_pred cEEEEcCCCchHHHH
Q 008956 57 DIVAIAKTGSGKTLG 71 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~ 71 (547)
.+.+.+|.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999974
No 473
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=39.13 E-value=46 Score=35.14 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=51.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhccC----CceEEEEecCCCCC--hhhHHHhhCC-Cc---EEEECcHHHHHHHhcCC
Q 008956 90 GPTVLVLSPTRELATQIQDEAVKFGKS----SRISCTCLYGGAPK--GPQLKDIDRG-VD---IVVATPGRLNDILEMRR 159 (547)
Q Consensus 90 ~~~vLil~Ptr~L~~Q~~~~~~~~~~~----~~i~~~~~~g~~~~--~~~~~~~~~~-~~---IlV~Tp~~L~~~l~~~~ 159 (547)
..++||.|+++.-+..+++.+.+.... ..-.+..++|.... ...+..+..+ .+ |+|+| +.+ ...
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-~~l-----~~G 512 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-QLL-----TTG 512 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-STT-----TTT
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-Chh-----hcC
Confidence 469999999999999999999876432 12224556665542 2334555543 22 66666 222 237
Q ss_pred cCCCCeeEEEEeccc
Q 008956 160 ISLNQVSYLVLDEAD 174 (547)
Q Consensus 160 ~~l~~~~~lVlDEaH 174 (547)
+++..+++||++..-
T Consensus 513 iDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 513 VDAPTCKNVVLARVV 527 (590)
T ss_dssp CCCTTEEEEEEESCC
T ss_pred ccchheeEEEEEecC
Confidence 889999999997764
No 474
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=38.90 E-value=18 Score=33.01 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l 73 (547)
...+++.+++|||||+.+-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568889999999998544
No 475
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=38.81 E-value=19 Score=35.70 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
-.++++|+|+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999997653
No 476
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=38.66 E-value=14 Score=32.38 Aligned_cols=16 Identities=38% Similarity=0.252 Sum_probs=13.3
Q ss_pred EEEEcCCCchHHHHHH
Q 008956 58 IVAIAKTGSGKTLGYL 73 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l 73 (547)
+++.+++|||||+.+-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999998543
No 477
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=38.58 E-value=13 Score=33.00 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHHH
Q 008956 57 DIVAIAKTGSGKTLGY 72 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~ 72 (547)
.+.+.+++|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4778899999999754
No 478
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=38.56 E-value=17 Score=32.03 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
.+++.+++|||||+.+-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36788999999997543
No 479
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=38.48 E-value=17 Score=32.81 Aligned_cols=18 Identities=22% Similarity=0.097 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+.+.+++|||||+.+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357788999999997543
No 480
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=38.24 E-value=29 Score=32.04 Aligned_cols=17 Identities=35% Similarity=0.292 Sum_probs=13.3
Q ss_pred EEEEcCCCchHHHHHHH
Q 008956 58 IVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~ 74 (547)
+++.+..|+|||+.+.-
T Consensus 17 ~~~~GkgGvGKTTl~~~ 33 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGE 33 (262)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHH
Confidence 56779999999975443
No 481
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=38.21 E-value=14 Score=36.09 Aligned_cols=22 Identities=27% Similarity=0.123 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYLLP 75 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l~~ 75 (547)
.+..+++.+|+|+|||..++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlql 143 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHAL 143 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3455788999999999765543
No 482
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=38.18 E-value=14 Score=32.42 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=13.3
Q ss_pred EEEEcCCCchHHHHHH
Q 008956 58 IVAIAKTGSGKTLGYL 73 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l 73 (547)
+++.++.|||||+.+-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999998644
No 483
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=37.96 E-value=19 Score=32.03 Aligned_cols=20 Identities=25% Similarity=0.120 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCchHHHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~~l 73 (547)
.+.-+++.+++|||||+.+-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 34568889999999998543
No 484
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=37.58 E-value=18 Score=32.56 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 008956 57 DIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~l 73 (547)
.+++.+++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998543
No 485
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=37.48 E-value=13 Score=33.19 Aligned_cols=18 Identities=33% Similarity=0.047 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGY 72 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~ 72 (547)
+.-+.+.+++|||||+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 334677899999999743
No 486
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=37.34 E-value=18 Score=34.97 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCchHHHH
Q 008956 54 QSRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~~ 71 (547)
.|.-+.+++|+|+|||+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 466788899999999963
No 487
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=37.23 E-value=60 Score=30.79 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=48.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHhcc-----cceEEEcCCCCHHHHHHHHHHhhcCCCcEEEEccc-c-----ccCCCCCCc
Q 008956 263 GSKIIVFCSTKKMCDQLARNLTRQ-----FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV-A-----ARGLDIKDI 331 (547)
Q Consensus 263 ~~k~IVF~~s~~~~~~l~~~L~~~-----~~~~~ihg~~~~~~R~~~l~~F~~g~~~ILVaT~~-~-----~~GiDip~v 331 (547)
+.++||.++++..+..+++.+++. ..+..++++.+....... +. ..+|+|+|.- + ..-+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 568999999999999999888742 567888998887654332 22 3789999932 1 123456667
Q ss_pred cEEEE
Q 008956 332 RVVVN 336 (547)
Q Consensus 332 ~~VI~ 336 (547)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77664
No 488
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=36.95 E-value=32 Score=32.95 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=20.2
Q ss_pred cEEEE-cCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 57 DIVAI-AKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 57 ~vlv~-a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
-+++. ...|.|||+++...+...... +.+||+|
T Consensus 106 vI~vts~kgG~GKTtva~nLA~~lA~~-------G~rVLLI 139 (299)
T 3cio_A 106 ILMITGATPDSGKTFVSSTLAAVIAQS-------DQKVLFI 139 (299)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHT-------TCCEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHhC-------CCcEEEE
Confidence 34444 457999998766544444332 4577776
No 489
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=36.90 E-value=16 Score=32.78 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=13.3
Q ss_pred CCcEEEEcCCCchHHHH
Q 008956 55 SRDIVAIAKTGSGKTLG 71 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~ 71 (547)
+.-+.|.+|+|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34567789999999974
No 490
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=36.87 E-value=33 Score=30.70 Aligned_cols=21 Identities=33% Similarity=0.164 Sum_probs=14.7
Q ss_pred EEEcCCCchHHHHHHHHHHHH
Q 008956 59 VAIAKTGSGKTLGYLLPGFIH 79 (547)
Q Consensus 59 lv~a~TGsGKT~~~l~~~l~~ 79 (547)
++...-|.|||+.++..+...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~l 25 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYL 25 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHH
Confidence 445788999998766544444
No 491
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=36.71 E-value=23 Score=38.93 Aligned_cols=20 Identities=30% Similarity=0.182 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008956 55 SRDIVAIAKTGSGKTLGYLL 74 (547)
Q Consensus 55 g~~vlv~a~TGsGKT~~~l~ 74 (547)
..++|+.+|+|+|||+.+-.
T Consensus 201 ~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 45899999999999986543
No 492
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=36.69 E-value=22 Score=31.52 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=24.8
Q ss_pred CCCeeEEEEeccccc--ccCCcHHHHHHHHHhCCCCceEEEEeccC
Q 008956 162 LNQVSYLVLDEADRM--LDMGFEPQIRKIVKEVPARRQTLMYTATW 205 (547)
Q Consensus 162 l~~~~~lVlDEaH~l--l~~g~~~~i~~i~~~l~~~~q~l~~SAT~ 205 (547)
..+.++||+||+..| .+..|...+..++... ..+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeec
Confidence 467889999998777 3344555566555532 2244435554
No 493
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=36.46 E-value=53 Score=31.85 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=12.1
Q ss_pred EEEEcCCCchHHHHH
Q 008956 58 IVAIAKTGSGKTLGY 72 (547)
Q Consensus 58 vlv~a~TGsGKT~~~ 72 (547)
+.+.+++|||||+.+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999753
No 494
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=36.41 E-value=35 Score=30.23 Aligned_cols=16 Identities=25% Similarity=-0.049 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHHH
Q 008956 57 DIVAIAKTGSGKTLGY 72 (547)
Q Consensus 57 ~vlv~a~TGsGKT~~~ 72 (547)
-+.+.+++|||||+.+
T Consensus 24 ~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999754
No 495
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=36.31 E-value=36 Score=27.62 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=30.7
Q ss_pred HHHHhcCCC-CeEEEEc-CChHHHHHHHHHHhcc-cceEEEcCCCCH
Q 008956 255 QILRSQEPG-SKIIVFC-STKKMCDQLARNLTRQ-FGAAAIHGDKSQ 298 (547)
Q Consensus 255 ~~l~~~~~~-~k~IVF~-~s~~~~~~l~~~L~~~-~~~~~ihg~~~~ 298 (547)
..+...... .++|||| .+-..+..++..|+.. +.+..+.|++..
T Consensus 80 ~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 80 LQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 333333445 7999999 5777777888888754 678888887653
No 496
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=36.27 E-value=15 Score=34.35 Aligned_cols=18 Identities=22% Similarity=0.086 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
.-+++++++|||||+.+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 347888999999998543
No 497
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=36.21 E-value=33 Score=32.41 Aligned_cols=23 Identities=17% Similarity=-0.062 Sum_probs=15.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHL 80 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l 80 (547)
+.+....|.|||+.++..+....
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La 27 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALA 27 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEeCCCcCcHHHHHHHHHHHHH
Confidence 44467899999987665544443
No 498
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=36.11 E-value=20 Score=32.27 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008956 56 RDIVAIAKTGSGKTLGYL 73 (547)
Q Consensus 56 ~~vlv~a~TGsGKT~~~l 73 (547)
..+++.+++|||||+.+-
T Consensus 6 ~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458889999999998543
No 499
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=35.86 E-value=15 Score=33.87 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.3
Q ss_pred CCCcEEEEcCCCchHHH
Q 008956 54 QSRDIVAIAKTGSGKTL 70 (547)
Q Consensus 54 ~g~~vlv~a~TGsGKT~ 70 (547)
.|.-+.+.+|.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45667889999999996
No 500
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=35.81 E-value=34 Score=31.78 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhccCCCCCCCEEEEE
Q 008956 58 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 96 (547)
Q Consensus 58 vlv~a~TGsGKT~~~l~~~l~~l~~~~~~~~~~~~vLil 96 (547)
+.+...-|.|||+.+...+...... +.++|+|
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~-------G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAM-------GKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTT-------TCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHC-------CCcEEEE
Done!