Query 008957
Match_columns 547
No_of_seqs 468 out of 2430
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 15:34:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 4.9E-40 1.7E-44 328.6 14.7 396 63-510 26-432 (451)
2 3o7q_A L-fucose-proton symport 100.0 9.2E-39 3.2E-43 318.1 16.8 367 63-501 24-422 (438)
3 4gc0_A D-xylose-proton symport 100.0 1.9E-37 6.6E-42 313.2 8.5 423 67-532 14-482 (491)
4 2gfp_A EMRD, multidrug resista 100.0 1.1E-35 3.6E-40 289.5 8.6 355 69-497 4-362 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 4E-34 1.4E-38 288.9 13.3 395 111-509 48-469 (491)
6 2cfq_A Lactose permease; trans 100.0 1.3E-30 4.6E-35 256.6 0.3 353 107-508 33-396 (417)
7 2xut_A Proton/peptide symporte 100.0 8.5E-29 2.9E-33 251.9 12.2 153 106-258 37-200 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 2.5E-14 8.5E-19 142.2 8.0 150 108-257 279-434 (451)
9 2cfq_A Lactose permease; trans 99.4 4.3E-13 1.5E-17 131.6 6.1 145 115-259 257-402 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.3 8.4E-12 2.9E-16 125.4 14.3 151 108-259 310-474 (491)
11 3o7q_A L-fucose-proton symport 99.3 6.7E-12 2.3E-16 124.1 11.2 138 108-248 286-424 (438)
12 4gc0_A D-xylose-proton symport 99.1 8.5E-11 2.9E-15 118.0 9.5 156 106-262 301-468 (491)
13 2xut_A Proton/peptide symporte 99.1 4.9E-11 1.7E-15 120.9 6.2 173 329-508 11-195 (524)
14 2gfp_A EMRD, multidrug resista 99.0 5.4E-11 1.8E-15 114.9 -0.9 163 335-505 5-168 (375)
15 2g9p_A Antimicrobial peptide l 37.8 9.8 0.00033 18.4 0.5 14 136-149 2-15 (26)
16 2knc_B Integrin beta-3; transm 24.6 68 0.0023 21.9 3.2 17 496-512 17-33 (79)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=4.9e-40 Score=328.64 Aligned_cols=396 Identities=13% Similarity=0.085 Sum_probs=307.2
Q ss_pred chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957 63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK 142 (547)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d 142 (547)
.++.+..+++..+..+++...++. .+|.+.+++ .+..+.|++.+++.++..++++++|+++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d 87 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFAL-----------------AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD 87 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHH-----------------HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 355677777788888887777764 448999999 99999999999999999999999999999
Q ss_pred hcCCceehHHHHHHHHHHHHhhhc----cccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhh
Q 008957 143 SHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG 218 (547)
Q Consensus 143 r~Grr~~l~~~~~~~~~~~~~~~~----a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 218 (547)
|+|||++++++.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|
T Consensus 88 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 167 (451)
T 1pw4_A 88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 167 (451)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHhhcCCCC-chhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCccccccccc
Q 008957 219 VALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD 297 (547)
Q Consensus 219 ~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (547)
.+++|++++++.+..| ||+.|++.++++++..++.++..||+++....+++++... . .+ ++.
T Consensus 168 ~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~--~~~-- 230 (451)
T 1pw4_A 168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN------D-------YP--DDY-- 230 (451)
T ss_dssp HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC------C----------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc------c-------cc--ccc--
Confidence 9999999999888888 9999999999988888877777777544322111110000 0 00 000
Q ss_pred chhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcc
Q 008957 298 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV 376 (547)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~ 376 (547)
+.+.++.. ..++ ...+.++++|.++...+..++.......+..+.|.|+++..+.+.... .+..+..+
T Consensus 231 --~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 299 (451)
T 1pw4_A 231 --NEKAEQEL-------TAKQ--IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299 (451)
T ss_dssp -----------------CCTH--HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred --hhhhhccc-------cccc--chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 00000000 0000 114677889999999998999888889999999999998777776443 45566778
Q ss_pred cccccceeeeeeeecc--cccchhHHHHHHHHHHHHH-HHHHHHHHh--hhHHHHHHHHHHHHHHHhhcCccceeeeecc
Q 008957 377 CGIVGTISGGFILDQM--GATISNAFKLLSAATFLGA-ISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHS 451 (547)
Q Consensus 377 ~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (547)
+.+++.++.+++.||+ ++| +.+..+..+.. +.+++.... .+.+...+..++.+++.+...+.......+.
T Consensus 300 ~~~~~~~~~g~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 374 (451)
T 1pw4_A 300 AGIPGTLLCGWMSDKVFRGNR-----GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 374 (451)
T ss_dssp HHHHHHHHHHHHHHHTSTTCH-----HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 8999999999999999 887 55554444444 333333332 2455555666666676666666677788888
Q ss_pred cCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 008957 452 VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV 510 (547)
Q Consensus 452 ~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (547)
.|++.|+++.|+.+...+.+|..++|.+.|++.+..| +...+++.+++.+++.++.+.
T Consensus 375 ~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 375 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877776477889999999999876 778888888777766665553
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=9.2e-39 Score=318.09 Aligned_cols=367 Identities=17% Similarity=0.207 Sum_probs=291.0
Q ss_pred chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957 63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK 142 (547)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d 142 (547)
.++.+..+++.++...++....+. .+|.+.+++|++..+.|++.+++.+++.++++++|+++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d 86 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDI-----------------LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK 86 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHH-----------------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345666667777777777666653 448899999999999999999999999999999999999
Q ss_pred hcCCceehHHHHHHHHHHHHhh---hccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhh
Q 008957 143 SHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV 219 (547)
Q Consensus 143 r~Grr~~l~~~~~~~~~~~~~~---~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 219 (547)
|+|||++++++.++.+++.+++ ++++|++.++++|++.|++.+...+...++++|++|+++|++++++.+.+.++|.
T Consensus 87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHhhc-CCCC-------------------------chhHHHHHHHHHHHHHHHHHhhc-cCccCCCCCCCcccc
Q 008957 220 ALGYVYGGVVG-SHLN-------------------------WRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKA 272 (547)
Q Consensus 220 ~~g~~l~~~l~-~~~g-------------------------wr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~ 272 (547)
++++++++.+. +..+ ||+.|++.+++.++..++.++.. ||..+..+++++
T Consensus 167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--- 243 (438)
T 3o7q_A 167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK--- 243 (438)
T ss_dssp HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS---
T ss_pred HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc---
Confidence 99999999988 6655 99999988887777666555432 332111000000
Q ss_pred ccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhh
Q 008957 273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW 352 (547)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (547)
.++...++++++++|.++...+..++.......+..+
T Consensus 244 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (438)
T 3o7q_A 244 -------------------------------------------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSY 280 (438)
T ss_dssp -------------------------------------------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011145677889999999999888888888889999
Q ss_pred ccce-eEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008957 353 GPKA-GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALF 430 (547)
Q Consensus 353 ~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (547)
.|.| +++..+.+.... ....+..++.+++.++.+++.||+++| +.+..+.++..+.+++....++.+. .+..
T Consensus 281 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 354 (438)
T 3o7q_A 281 LIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGHVG-LIAL 354 (438)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCCHHHH-HHHH
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHcCCcHH-HHHH
Confidence 9999 888777775443 455666788899999999999999998 6666666666666555555555443 3444
Q ss_pred HHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHH
Q 008957 431 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF 501 (547)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 501 (547)
.+.+++.+..++.......+.+|++ ++.+.++.. ... +|..++|.+.|++.|..|+++..+++.+++.
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 422 (438)
T 3o7q_A 355 TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 6666777777777777778888766 888888775 444 4888999999999998776777777655443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.9e-37 Score=313.24 Aligned_cols=423 Identities=14% Similarity=0.098 Sum_probs=269.7
Q ss_pred HHHHHHHHHHHhhcccccccccccCCccccCCCCcccccccccccccc--------CccchhHHHHHHHHHHhhhhhhhh
Q 008957 67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKL--------NNFQDGVLSSAFMVGLLVASPIFA 138 (547)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~--------s~~~~g~~~s~~~~~~~~~~~~~g 138 (547)
.++.+++.+..++|...++. ++|.+.++++. ++.+.|++.+++.+|..+|++++|
T Consensus 14 ~~~a~lg~~~~Gyd~~~i~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G 76 (491)
T 4gc0_A 14 TLVATLGGLLFGYDTAVISG-----------------TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGG 76 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGG-----------------THHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777889888875 34777776643 345679999999999999999999
Q ss_pred hhhhhcCCceehHHHHHHHHHHHHhhh------------------ccccHHHHHHHHHHhhhhhhhhhhcccccccccCC
Q 008957 139 SLAKSHNPFRLIGVGLSVWTFATAGCG------------------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP 200 (547)
Q Consensus 139 ~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 200 (547)
+++||+|||++++++.+++.+++++++ +++|+++++++|+++|++.|...+....+++|+.|
T Consensus 77 ~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p 156 (491)
T 4gc0_A 77 YCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP 156 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999988 47899999999999999999999999999999999
Q ss_pred CCCcchhhhHHHHhhhhhhhhhhhhHHhhcC--------CCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCcccc
Q 008957 201 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA 272 (547)
Q Consensus 201 ~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~--------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 272 (547)
+++|++..++.+.+..+|.++++.++..+.. ..+||+.+.+..++.++..+ ..+..||+++....+.+.+.
T Consensus 157 ~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~ 235 (491)
T 4gc0_A 157 AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQ 235 (491)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHH
T ss_pred HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhH
Confidence 9999999999999999999999988876653 23588888877766655444 34455776654322211111
Q ss_pred ccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHH-HHHHHHHHHHHHHHhh
Q 008957 273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VLGYIAYNFVIGAYSY 351 (547)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 351 (547)
..+..+ ........++........ ....++. ......++.+..... ....+......+.+..
T Consensus 236 a~~~l~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
T 4gc0_A 236 AEGILR---------------KIMGNTLATQAVQEIKHS-LDHGRKT-GGRLLMFGVGVIVIGVMLSIFQQFVGINVVLY 298 (491)
T ss_dssp HHHHHH---------------HHHHHHHHHHHHHHHHHH-HHHHHHH-TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhHH---------------HhcCCchhHHHHHHHHHH-HHhhhhh-hhHHHHhcccHHHHHHHHHHHHHHhhhhHHHh
Confidence 100000 000000000000000000 0000000 111222333333333 3333333444556667
Q ss_pred hccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh----hhHHHHH
Q 008957 352 WGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SSLYGFL 427 (547)
Q Consensus 352 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 427 (547)
|.|.+.+.....+........+..+..+++.++++++.||+||| +.++.+.....+.++..... ...+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----chhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 77766665444443334445566778888999999999999999 55544444433333222111 1223333
Q ss_pred HHHHHHHHHHhhcCccc-eeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccc-----hhHHHHHHHHHHH
Q 008957 428 ALFTVGELLVFATQAPV-NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN-----NWRKTTLALTSIF 501 (547)
Q Consensus 428 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~-----~~~~~~~~~~~~~ 501 (547)
+..++...+....+.+. +.+..|.+|++.|+++.|+.+...++ ++++++.+.+.+.+... .+...+++++++.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~-~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 374 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWL-ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHH-HHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33344444444444443 45667778889999999999888877 77777877777654321 1224566666665
Q ss_pred HHHHHHHHHHHhhcc-cccccchhhhhhcccc
Q 008957 502 FLAAGIWFVGIFLKS-IDKFNEDGENQISLDS 532 (547)
Q Consensus 502 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 532 (547)
+++.++.+ .++|| |+|++||+++..+++.
T Consensus 453 ~~~~i~~~--~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 453 VLAALFMW--KFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHHHHH--HHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHHH--heecCCCCCCHHHHHHHhCCCC
Confidence 55544332 35677 8999999887765433
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1.1e-35 Score=289.47 Aligned_cols=355 Identities=13% Similarity=0.077 Sum_probs=274.8
Q ss_pred HHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCce
Q 008957 69 IFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR 148 (547)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~ 148 (547)
.+++..+...++...... .+|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 66 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIP-----------------AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP 66 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------HHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHhh-----------------hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 445555555555555543 448899999999999999999999999999999999999999999
Q ss_pred ehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHh
Q 008957 149 LIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 228 (547)
Q Consensus 149 ~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~ 228 (547)
+++++.++.+++.++.++++|++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 146 (375)
T 2gfp_A 67 VILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL 146 (375)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhccccc
Q 008957 229 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG 308 (547)
Q Consensus 229 l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (547)
+.++.|||+.|++.+++.++..+..++..||+++..++ +++
T Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------------------------- 187 (375)
T 2gfp_A 147 LDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP--RTR------------------------------------- 187 (375)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC--CCC-------------------------------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc--ccc-------------------------------------
Confidence 99988999999999888777666555555653322100 000
Q ss_pred chhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeee
Q 008957 309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGF 387 (547)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 387 (547)
..+++++++++|.++...+..++.......+..+.|.|+++..+.+.... .......++.+++.++.++
T Consensus 188 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 257 (375)
T 2gfp_A 188 ----------LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR 257 (375)
T ss_dssp ----------TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00223456678888888888888888888999999999988767665433 4455666788888888888
Q ss_pred eeecccccchhHHHHHHHHH-HHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHH
Q 008957 388 ILDQMGATISNAFKLLSAAT-FLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS 464 (547)
Q Consensus 388 l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~ 464 (547)
+.||.+++ ....... .......+.... .++.+...+..++.+++.+...+.......+..| +.|+++.|+.
T Consensus 258 l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~ 331 (375)
T 2gfp_A 258 PNKRFSTL-----MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALV 331 (375)
T ss_dssp TTTHHHHH-----HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHH
Confidence 88887763 2222211 111111111111 2345555566677777788888888888888876 8999999999
Q ss_pred HHHHHhhcCCCccchhhhhhcccchhHHHHHHH
Q 008957 465 TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL 497 (547)
Q Consensus 465 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 497 (547)
+...+. |..++|.+.|.+.+. +++...+++.
T Consensus 332 ~~~~~~-g~~~~~~~~g~l~~~-~~~~~~~~~~ 362 (375)
T 2gfp_A 332 GGLQNI-GSGVLASLSAMLPQT-GQGSLGLLMT 362 (375)
T ss_dssp HHHHHH-HHHCCSTTCTHHHHH-HHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHhcC-CcccHHHHHH
Confidence 887777 888899999999875 3465555543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=4e-34 Score=288.86 Aligned_cols=395 Identities=10% Similarity=-0.014 Sum_probs=258.3
Q ss_pred ccccCccchhHHHHHHHHHHhhhhhhhhhhhhh-cCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhh
Q 008957 111 DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS 189 (547)
Q Consensus 111 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~ 189 (547)
|+|++..+.+++.+++.++..++++++|+++|| +|||++++++.++.+++.+++++++|++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 399999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCC--cchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCC
Q 008957 190 LAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 267 (547)
Q Consensus 190 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 267 (547)
...++++|++|+++ |+.++++++.+.++|..++|.+++.+.+..|||+.|++.++..++..++.++..|+..+...++
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 99999999999988 7778888999999999999999999999899999999998877776666655544433221111
Q ss_pred CccccccccccccCCcCCCC------------Ccccccccccchhh--hhcccccchhhhhhhhhhhhhhHhhcccchhH
Q 008957 268 ESGKAQVVASVSEGSEASNL------------NDHVSEDISDQASE--RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV 333 (547)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (547)
++.+.. .++..+..+.... ......+..+.... ...............++.........+....+
T Consensus 208 ~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (491)
T 4aps_A 208 PTDPLA-PEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI 286 (491)
T ss_dssp CSCCCS-HHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred CCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 110000 0000000000000 00000000000000 00000000000000000000011111222334
Q ss_pred HHHHHHHHHHHHHHHHhhhccceeEeeccCch-hhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHH
Q 008957 334 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI 412 (547)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 412 (547)
...+..++..........+.|.|.++..+.+. ..........++.+++.++.+++.||++||+......+..+..+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~ 366 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGL 366 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 44444555555566666777777776655552 23344456667777888889999999999854332333344444444
Q ss_pred HHHHHHHhh---------hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhh
Q 008957 413 SCLTAFCLS---------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL 483 (547)
Q Consensus 413 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l 483 (547)
.+++..... +.+...+..++.+++.+...+....+..+..|++.|+++.|+.+...++ |.+++|.+.+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~i~~~~~~~~ 445 (491)
T 4aps_A 367 SFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSV-GSALNAQLVTLY 445 (491)
T ss_dssp HHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHH-HHHHHHHHGGGG
T ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 433333221 4455666667777777777888888889999999999999999877777 888999999988
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHH
Q 008957 484 QDHVNNWRKTTLALTSIFFLAAGIWF 509 (547)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (547)
.+. ++...+.+.+++.+++.++.+
T Consensus 446 ~~~--~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 446 NAK--SEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp GGS--STTHHHHHTHHHHHHHHHHHH
T ss_pred hcc--cHHHHHHHHHHHHHHHHHHHH
Confidence 875 355667776666655555444
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=1.3e-30 Score=256.58 Aligned_cols=353 Identities=13% Similarity=0.031 Sum_probs=226.9
Q ss_pred ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHH---HhhhccccHH-HHHHHHHHhhh
Q 008957 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW-SIAICRMLVGV 182 (547)
Q Consensus 107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~a~~~~-~l~~~r~l~G~ 182 (547)
.+++++|++..+.|++.+.+.+++.++++++|+++||+|||++++++.++++++. ....+++... .++..+++.|+
T Consensus 33 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (417)
T 2cfq_A 33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI 112 (417)
T ss_dssp HHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667799999999999999999999999999999999999999999888776532 2123332221 23456777777
Q ss_pred hhhhhhhcccccccccCCC--CCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCc
Q 008957 183 GEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ 260 (547)
Q Consensus 183 ~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~ 260 (547)
+.+...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+ .+||+.|++.+++.++..+..++..||+
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 6666555555555555543 356778888888899999999999998876 5899999988776544433333332332
Q ss_pred cCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHH
Q 008957 261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI 340 (547)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (547)
++. .++++.. +. + .++ ....++++++++|.++...+..+
T Consensus 192 ~~~---~~~~~~~------------~~-----~----------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 230 (417)
T 2cfq_A 192 PSS---ATVANAV------------GA-----N----------HSA-----------FSLKLALELFRQPKLWFLSLYVI 230 (417)
T ss_dssp SCS---SCSSSSS------------SS-----C----------CCC-----------CCHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccc---ccccccc------------cc-----c----------ccc-----------ccHHHHHHHhcCCchhhHHHHHH
Confidence 110 0000000 00 0 000 00123456778888877666555
Q ss_pred HHHHHHHHHhhhccceeEeeccCc---hhh-HhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHH
Q 008957 341 AYNFVIGAYSYWGPKAGYNIYHMS---NAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT 416 (547)
Q Consensus 341 ~~~~~~~~~~~~~p~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (547)
.....+..+..+.|.|+.+.++.. ... .....+..++.+++.++.+++.||++|| +.+..+..+..+..++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~~~~~~~~~~~~ 305 (417)
T 2cfq_A 231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHH
Confidence 544455555556676665443321 111 2333455567788889999999999998 5555555444444333
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHH-HHHHHhhcCCCccchhhhhhcccchhHHHHH
Q 008957 417 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS-TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL 495 (547)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~-~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 495 (547)
....++.+..++..++.+++.....+....+..+..|++.|+++.+.. +...++ |.+++|.+.|++.+..| +...|.
T Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l-g~~~gp~l~G~l~~~~g-~~~~f~ 383 (417)
T 2cfq_A 306 SSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL-AMIFMSVLAGNMYESIG-FQGAYL 383 (417)
T ss_dssp HTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH-HHHHHTHHHHTHHHHSH-HHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH-HHHHhhhhHHHHHHhcC-cHHHHH
Confidence 333344444444444444444444444556777888889999999985 555555 88889999999998765 667777
Q ss_pred HHHHHHHHHHHHH
Q 008957 496 ALTSIFFLAAGIW 508 (547)
Q Consensus 496 ~~~~~~~~~~~~~ 508 (547)
+.+++.+++.++.
T Consensus 384 ~~~~~~l~~~~~~ 396 (417)
T 2cfq_A 384 VLGLVALGFTLIS 396 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777666555443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=8.5e-29 Score=251.93 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=139.1
Q ss_pred cccccccc------cCccchhHHHHHHHHHHhhhhhhhhhhhhhc-CCceehHHHHHHHHHHHHhhhccc-cHHHHHHHH
Q 008957 106 SGIQGDFK------LNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICR 177 (547)
Q Consensus 106 ~~i~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r 177 (547)
+.+.+++| ++..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+++.++.++++ +++.++++|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45677888 9999999999999999999999999999999 999999999999999999999999 999999999
Q ss_pred HHhhhhhhhhhhcccccccccCCCCCcchhhhH---HHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 008957 178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM---FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF 254 (547)
Q Consensus 178 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~ 254 (547)
++.|++.+...+...+++.|++|+++|+++.+. ++.+.++|.+++|.+++++.+..|||+.|++.+++.++..++.+
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877666 99999999999999999999888999999999888766555544
Q ss_pred hhcc
Q 008957 255 VIKP 258 (547)
Q Consensus 255 ~~~p 258 (547)
+..|
T Consensus 197 ~~~~ 200 (524)
T 2xut_A 197 LGRK 200 (524)
T ss_dssp SSSS
T ss_pred Hhcc
Confidence 4333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.49 E-value=2.5e-14 Score=142.21 Aligned_cols=150 Identities=11% Similarity=-0.036 Sum_probs=133.6
Q ss_pred cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc--CCceehHHHHHHHH-HHHHhhhcc--ccHHHHHHHHHHhhh
Q 008957 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGVGLSVWT-FATAGCGSS--FDFWSIAICRMLVGV 182 (547)
Q Consensus 108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~a--~~~~~l~~~r~l~G~ 182 (547)
+.+.+|.+..+.+++.+.+.++..++.++.|++.||+ |||+.+.++.++.. ++.++..+. .+.+.+.+..++.|+
T Consensus 279 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 358 (451)
T 1pw4_A 279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 358 (451)
T ss_dssp BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 4445899999999999999999999999999999999 99999888887776 777777766 478888888999999
Q ss_pred hhhhhhhcccccccccCCCCCcchhhhHHHHhhhh-hhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhc
Q 008957 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (547)
Q Consensus 183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 257 (547)
+.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||++.|++.+++.++..++.++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888899999999999999999999999999 9999999999999999999999999988887777666554
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.36 E-value=4.3e-13 Score=131.57 Aligned_cols=145 Identities=8% Similarity=0.010 Sum_probs=126.1
Q ss_pred CccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhccccc
Q 008957 115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF 194 (547)
Q Consensus 115 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~ 194 (547)
+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888999999999999999999999999999998888888888888888888888888877777777889
Q ss_pred ccccCCCCCcchhhhH-HHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccC
Q 008957 195 IDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259 (547)
Q Consensus 195 i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~ 259 (547)
+.|.+|++.|+.+.++ ++....+|..++|.++|++.+..|++..|.+.++++++..++.+++.||
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999998 5888889999999999999988889999999988888777766655554
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.34 E-value=8.4e-12 Score=125.37 Aligned_cols=151 Identities=14% Similarity=0.054 Sum_probs=125.6
Q ss_pred cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehH-----HHHHHHHHHHHhhhccc---------cHHHH
Q 008957 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-----VGLSVWTFATAGCGSSF---------DFWSI 173 (547)
Q Consensus 108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~a~---------~~~~l 173 (547)
..+.++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++..+.. +.+.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4aps_A 310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL 389 (491)
T ss_dssp HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence 34446666678899999999999999999999999999998766 78888888877776643 77888
Q ss_pred HHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHH
Q 008957 174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA 253 (547)
Q Consensus 174 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 253 (547)
++.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+ .++.+.|++.++.+++..++.
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999899999999999999999999999999999999999999988875 467888999988888877777
Q ss_pred HhhccC
Q 008957 254 FVIKPL 259 (547)
Q Consensus 254 ~~~~p~ 259 (547)
+++.++
T Consensus 469 ~~~~~~ 474 (491)
T 4aps_A 469 VFLSKR 474 (491)
T ss_dssp HHC---
T ss_pred HHHHHH
Confidence 766554
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.31 E-value=6.7e-12 Score=124.07 Aligned_cols=138 Identities=9% Similarity=-0.127 Sum_probs=121.2
Q ss_pred cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhh
Q 008957 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF 187 (547)
Q Consensus 108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~ 187 (547)
+.+.+|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++.. ++.|++.+..
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 364 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ 364 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence 455569999999999999999999999999999999999999999999999999999988887765554 8889999999
Q ss_pred hhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC-chhHHHHHHHHHHH
Q 008957 188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLP 248 (547)
Q Consensus 188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~ 248 (547)
.+...++..|.+|++ |+.+.++.. ...+|..++|.+.+++.+..| ++..|++.++..++
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999999976 888888877 566999999999999999888 99999987654443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.14 E-value=8.5e-11 Score=118.03 Aligned_cols=156 Identities=8% Similarity=-0.031 Sum_probs=118.8
Q ss_pred cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc-----ccHHHHHH-HHHH
Q 008957 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAI-CRML 179 (547)
Q Consensus 106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~-~r~l 179 (547)
+.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+.. .-+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 56677777777777777888889999999999999999999999999988888777665432 22222222 2222
Q ss_pred hhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcC------CCCchhHHHHHHHHHHHHHHHH
Q 008957 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLA 253 (547)
Q Consensus 180 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~------~~gwr~~f~~~~~~~~~~~~~~ 253 (547)
.+.+. ...+....+.+|.+|.+.|+.++++......+|..+++.+.+.+.+ ..++.+.|++.++++++..++.
T Consensus 381 ~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 381 AAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp HHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22222 2446677899999999999999999999999999988887766543 3467788999999999999999
Q ss_pred HhhccCccC
Q 008957 254 FVIKPLQLK 262 (547)
Q Consensus 254 ~~~~p~~~~ 262 (547)
+++.||+..
T Consensus 460 ~~~~PETkg 468 (491)
T 4gc0_A 460 WKFVPETKG 468 (491)
T ss_dssp HHHCCCCTT
T ss_pred HheecCCCC
Confidence 999998643
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.11 E-value=4.9e-11 Score=120.86 Aligned_cols=173 Identities=12% Similarity=0.015 Sum_probs=131.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhccceeEeecc------CchhhH-hhhhhhcccccccceeeeeeeecc-cccchhHH
Q 008957 329 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH------MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAF 400 (547)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~ 400 (547)
++.++...+..++..+.++.+..++|.|+.+..+ .+.... .+.....++..++.++.|+++||+ |||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----- 85 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY----- 85 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 3566667777777788888888888888877666 665443 555677788899999999999999 998
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHH---HHHHHHhhcCCCc
Q 008957 401 KLLSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI---STVSIHIFGDVPS 476 (547)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~---~~~~~~~~g~~~~ 476 (547)
+.+..+.++..+..++....+ +.+..++..++.+++.+...+....++.+.+|++.|+++.+. .+...++ |.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~~g 164 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF-GSFFA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH-HHHHH
Confidence 677666666666666666666 777777777888888888888888899999999999776665 7666666 88889
Q ss_pred cchhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008957 477 SPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW 508 (547)
Q Consensus 477 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (547)
|.+.+++.+..+ |+..|++.+++.++..++.
T Consensus 165 ~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 165 SLSMPLLLKNFG-AAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc-HHHHHHHHHHHHHHHHHHH
Confidence 999999988765 8888887777655544443
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.95 E-value=5.4e-11 Score=114.92 Aligned_cols=163 Identities=14% Similarity=0.064 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH
Q 008957 335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS 413 (547)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 413 (547)
..+..++.......+....|.+.++ .+.+.... .......++..++.++.|+++||+||| +.+..+..+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR-----PVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC-----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHH
Confidence 3444455555555566666665554 55554433 555677888899999999999999999 5565666666666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHH
Q 008957 414 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT 493 (547)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 493 (547)
.++....++.+..++..++.+++.+...+....+..+..|+++|+++.+..+..... |..++|.+.+++.+..+ |+..
T Consensus 79 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~ 156 (375)
T 2gfp_A 79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILV-SPLLAPLIGGLLDTMWN-WRAC 156 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHH-HHHHHHHHHHHSSCHHH-HHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhcc-HHHH
Confidence 666666677777777788888888888888888888888889999999999877776 88999999999988754 8888
Q ss_pred HHHHHHHHHHHH
Q 008957 494 TLALTSIFFLAA 505 (547)
Q Consensus 494 ~~~~~~~~~~~~ 505 (547)
+.+.++..++..
T Consensus 157 ~~~~~~~~~~~~ 168 (375)
T 2gfp_A 157 YLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877666654443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=37.82 E-value=9.8 Score=18.39 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=10.6
Q ss_pred hhhhhhhhcCCcee
Q 008957 136 IFASLAKSHNPFRL 149 (547)
Q Consensus 136 ~~g~l~dr~Grr~~ 149 (547)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788889998853
No 16
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.59 E-value=68 Score=21.90 Aligned_cols=17 Identities=6% Similarity=0.217 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008957 496 ALTSIFFLAAGIWFVGI 512 (547)
Q Consensus 496 ~~~~~~~~~~~~~~~~~ 512 (547)
+.+++.+++++++++++
T Consensus 17 vi~gilliGllllliwk 33 (79)
T 2knc_B 17 VMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555555554
Done!