Query 008957
Match_columns 547
No_of_seqs 468 out of 2430
Neff 11.1
Searched_HMMs 13730
Date Mon Mar 25 15:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008957.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008957hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 9.8E-41 7.2E-45 330.9 13.5 399 63-510 23-429 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.9 8E-29 5.8E-33 241.6 8.1 355 106-509 31-397 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.5 3.5E-15 2.5E-19 143.8 3.0 154 106-259 248-402 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.4 2.6E-13 1.9E-17 132.2 8.2 152 106-257 274-431 (447)
5 d1otsa_ f.20.1.1 (A:) Clc chlo 18.6 2E+02 0.015 25.0 8.7 36 195-230 146-183 (444)
6 d3proc1 d.52.1.1 (C:6-85) Alph 9.7 1E+02 0.0073 19.5 2.6 40 106-145 5-44 (80)
7 d1u7ga_ f.44.1.1 (A:) Ammonium 6.1 6.9E+02 0.051 20.8 8.8 49 178-226 283-331 (383)
8 d1v54g_ f.23.2.1 (G:) Mitochon 4.6 2.7E+02 0.019 17.6 2.6 22 235-256 16-37 (84)
9 d2iuba2 f.17.3.1 (A:286-349) M 4.2 2.9E+02 0.021 15.9 2.6 23 234-256 37-59 (64)
10 d2e74f1 f.23.25.1 (F:1-32) Pet 3.2 2.6E+02 0.019 13.2 1.2 14 208-221 13-26 (32)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=9.8e-41 Score=330.90 Aligned_cols=399 Identities=13% Similarity=0.077 Sum_probs=298.8
Q ss_pred chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957 63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK 142 (547)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d 142 (547)
+|.++..++++++..++++.+++.. .|.+. |+|+|.+|+|++.+++.+++.++++++|+++|
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D 84 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSD 84 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHH-----------------HHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888889999998888753 37665 58999999999999999999999999999999
Q ss_pred hcCCceehHHHHHHHHHHHHhhhcc----ccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhh
Q 008957 143 SHNPFRLIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG 218 (547)
Q Consensus 143 r~Grr~~l~~~~~~~~~~~~~~~~a----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 218 (547)
|+|||+++.++.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|
T Consensus 85 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 164 (447)
T d1pw4a_ 85 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 164 (447)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchh
Confidence 9999999999999999999998876 478899999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHhhcCC-CCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCccccccccc
Q 008957 219 VALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD 297 (547)
Q Consensus 219 ~~~g~~l~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (547)
.++++.+++.+... .+||+.|++.+++.++..++.+++.++.+.....+..++... +..+
T Consensus 165 ~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 225 (447)
T d1pw4a_ 165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-------------------DYPD 225 (447)
T ss_dssp HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-------------------C---
T ss_pred hhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-------------------hccc
Confidence 99999988876653 479999999999999888888888776544322211111100 0000
Q ss_pred chhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcc
Q 008957 298 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV 376 (547)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~ 376 (547)
...++.+ +.........+..++++.++......++.....+.+..+.|.|+.+..+.+.... ....+..+
T Consensus 226 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
T d1pw4a_ 226 DYNEKAE---------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 296 (447)
T ss_dssp -------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred chhhccc---------cccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchh
Confidence 0000000 0000111335667888999998888888888889999999999998888876444 45566778
Q ss_pred cccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCC
Q 008957 377 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF--CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP 454 (547)
Q Consensus 377 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (547)
+.+++.+++|++.||++++.......+. ..+.....+... ...+.+...+..++.+++.....+.......+..|+
T Consensus 297 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 374 (447)
T d1pw4a_ 297 AGIPGTLLCGWMSDKVFRGNRGATGVFF--MTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK 374 (447)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHH--HHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT
T ss_pred hhhhhhhhhhhhhhhccccccccccchh--HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 8899999999999999987532111111 111111111111 123455555666666666666666677778888899
Q ss_pred cchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 008957 455 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV 510 (547)
Q Consensus 455 ~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (547)
+.|+++.|+.+...+..|.+++|.+.|++.|..| +...+++.+++.+++.++...
T Consensus 375 ~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 375 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888787566778999999999876 667777777666665555443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.95 E-value=8e-29 Score=241.57 Aligned_cols=355 Identities=13% Similarity=0.012 Sum_probs=239.4
Q ss_pred cc-cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHH----HHHHHHh
Q 008957 106 SG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI----AICRMLV 180 (547)
Q Consensus 106 ~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l----~~~r~l~ 180 (547)
|. +.+++|+|++++|++.+++.+++.++++++|+++||+|||++++++.++..++.++..+..+.... ++.+++.
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG 110 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 44 677899999999999999999999999999999999999999999999999999888887766554 4455555
Q ss_pred hhhhhhhhhcccccccccCCC--CCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhcc
Q 008957 181 GVGEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP 258 (547)
Q Consensus 181 G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p 258 (547)
+.+.+...........+..++ +++.+..+........|..+++.+++.+.+. +|++.+........+..++.++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (417)
T d1pv7a_ 111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp TTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhc
Confidence 555555444444444433332 3456677888888899999999999988764 5666777776666666666666666
Q ss_pred CccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHH
Q 008957 259 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG 338 (547)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (547)
+.+....++++++... +. .........++++..+.....
T Consensus 190 ~~~~~~~~~~~~~~~~------------------------------~~-----------~~~~~~~~~~~~~~~~~~~~~ 228 (417)
T d1pv7a_ 190 DAPSSATVANAVGANH------------------------------SA-----------FSLKLALELFRQPKLWFLSLY 228 (417)
T ss_dssp CSCSSSCSSHHHHSCC------------------------------CC-----------CCHHHHHHHTTSSHHHHHHHH
T ss_pred ccccchhhhhhhhhhc------------------------------cc-----------ccccccccccccccccchhhh
Confidence 5443322111111000 00 000111222233333332222
Q ss_pred HHHHHHHHHH----HhhhccceeEeeccCch-hhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH
Q 008957 339 YIAYNFVIGA----YSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS 413 (547)
Q Consensus 339 ~~~~~~~~~~----~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 413 (547)
.......... ...+.+.+..+ .+.+. ..........++..++..+.+++.||.+++ +.+..+..+..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~~~~~ 302 (417)
T d1pv7a_ 229 VIGVSCTYDVFDQQFANFFTSFFAT-GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhccccccccccccc-cccchhhhcccccccccccccchhhhhhhhcccccc-----cchhhhHHHHHHh
Confidence 2222222222 22222222222 12222 122334555677888889999999999998 6777777777777
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHH
Q 008957 414 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT 493 (547)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 493 (547)
.+.....++.+..++..++.+++.+...+....+..+.+|++.|+++.|+.....+.+|.+++|.+.|++.|..| ++..
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~ 381 (417)
T d1pv7a_ 303 IIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGA 381 (417)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHH
T ss_pred hhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHH
Confidence 777777778888888888888888888888888899999999999999986544443488889999999999876 7788
Q ss_pred HHHHHHHHHHHHHHHH
Q 008957 494 TLALTSIFFLAAGIWF 509 (547)
Q Consensus 494 ~~~~~~~~~~~~~~~~ 509 (547)
+++.+++.++..++..
T Consensus 382 ~~~~~~~~~~~~~~~~ 397 (417)
T d1pv7a_ 382 YLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887777666555544
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.48 E-value=3.5e-15 Score=143.84 Aligned_cols=154 Identities=7% Similarity=-0.018 Sum_probs=139.6
Q ss_pred cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhh
Q 008957 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA 185 (547)
Q Consensus 106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~ 185 (547)
+...++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 327 (417)
T d1pv7a_ 248 TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP 327 (417)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHH
Confidence 33445556677788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccccCCCCCcchhhhHH-HHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccC
Q 008957 186 SFISLAAPFIDDNAPVPQKTAWLSMF-YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259 (547)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~ 259 (547)
...+...+++.|.+|+++|+++.++. +....+|..++|.++|++.+..||++.|++.+++.++..++.++++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999985 566779999999999999999999999999999998888888777754
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.37 E-value=2.6e-13 Score=132.19 Aligned_cols=152 Identities=11% Similarity=-0.038 Sum_probs=123.6
Q ss_pred cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHH---HHHhh--hccccHHHHHHHHHHh
Q 008957 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF---ATAGC--GSSFDFWSIAICRMLV 180 (547)
Q Consensus 106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~---~~~~~--~~a~~~~~l~~~r~l~ 180 (547)
..+.+.++.+..+.++..+.+.++..++.++.|++.||++||+......+...+ +.++. ....+.+..+++-++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (447)
T d1pw4a_ 274 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 353 (447)
T ss_dssp HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred hhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 456677899999999999999999999999999999999988754443333222 22222 2346778888888899
Q ss_pred hhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhh-hhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhc
Q 008957 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257 (547)
Q Consensus 181 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 257 (547)
|++.+...+....+..|.+|++.|+++.|+.+....+ |.+++|++.+++.++.||+..|++.++..++..++.+++.
T Consensus 354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888999999999999999999999887776 5677899999999999999999998888777777666655
No 5
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=18.61 E-value=2e+02 Score=25.04 Aligned_cols=36 Identities=11% Similarity=-0.043 Sum_probs=24.9
Q ss_pred ccccCCCC--CcchhhhHHHHhhhhhhhhhhhhHHhhc
Q 008957 195 IDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVG 230 (547)
Q Consensus 195 i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 230 (547)
+.++++.+ ++.+.+-...++.+++.+++.+++|.+.
T Consensus 146 l~~~~~~~~~~~~r~l~~~GaaAglaa~F~aPlaG~lF 183 (444)
T d1otsa_ 146 VLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILF 183 (444)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHhhhhHHhhHHHHHHHHHHHHhhccCCchhhhhh
Confidence 34555432 2345677788888899999999998654
No 6
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=9.66 E-value=1e+02 Score=19.48 Aligned_cols=40 Identities=13% Similarity=-0.032 Sum_probs=24.8
Q ss_pred cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcC
Q 008957 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN 145 (547)
Q Consensus 106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G 145 (547)
..|+.|||+|+.|..-=...-.-..-+-.-+-.-+.|+||
T Consensus 5 ~AmqRDLgLt~~qa~~RLa~E~~A~~~~~~lr~~lg~~fa 44 (80)
T d3proc1 5 FAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQFA 44 (80)
T ss_dssp HHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 5578899999988765555544444444444444444443
No 7
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=6.10 E-value=6.9e+02 Score=20.82 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=27.4
Q ss_pred HHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhH
Q 008957 178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG 226 (547)
Q Consensus 178 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 226 (547)
++.|+..+........++.+..+-++---+.++...+.-+|.+..++.+
T Consensus 283 ~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa 331 (383)
T d1u7ga_ 283 LIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFA 331 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhc
Confidence 3445545544444545554445545555567777776666666655543
No 8
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.63 E-value=2.7e+02 Score=17.60 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhh
Q 008957 235 WRYAFWGEAILMLPFAVLAFVI 256 (547)
Q Consensus 235 wr~~f~~~~~~~~~~~~~~~~~ 256 (547)
||-+-+..++++++++.+-.++
T Consensus 16 Wkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 16 WRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998988888877666554
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.21 E-value=2.9e+02 Score=15.95 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=8.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHhh
Q 008957 234 NWRYAFWGEAILMLPFAVLAFVI 256 (547)
Q Consensus 234 gwr~~f~~~~~~~~~~~~~~~~~ 256 (547)
+|.+.|+....+.+...++.+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~ 59 (64)
T d2iuba2 37 RWKWGYPVVLAVMGVIAVIMVVY 59 (64)
T ss_dssp -----CHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHHHH
Confidence 46655555544444444444443
No 10
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.17 E-value=2.6e+02 Score=13.20 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=0.0
Q ss_pred hhHHHHhhhhhhhh
Q 008957 208 LSMFYMCIPTGVAL 221 (547)
Q Consensus 208 ~~~~~~~~~~G~~~ 221 (547)
+|+...++++|..+
T Consensus 13 fglifvgwglgall 26 (32)
T d2e74f1 13 FGLIFVGWGLGVLL 26 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHH
Done!