Query 008959
Match_columns 547
No_of_seqs 605 out of 3405
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 18:41:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02964 phosphatidylserine de 100.0 2E-125 5E-130 1029.6 39.8 539 1-543 1-567 (644)
2 KOG2419 Phosphatidylserine dec 100.0 4E-101 8E-106 800.2 16.2 535 1-542 206-897 (975)
3 PRK00723 phosphatidylserine de 100.0 2.5E-60 5.3E-65 481.4 18.3 233 301-542 1-233 (297)
4 PRK03140 phosphatidylserine de 100.0 5.2E-52 1.1E-56 414.5 16.6 189 348-542 17-205 (259)
5 PTZ00403 phosphatidylserine de 100.0 7.1E-52 1.5E-56 424.8 16.6 190 347-542 63-260 (353)
6 PLN02938 phosphatidylserine de 100.0 1.1E-51 2.5E-56 430.2 15.6 210 324-542 77-331 (428)
7 PRK00044 psd phosphatidylserin 100.0 4.1E-51 9E-56 414.3 16.8 190 347-542 16-210 (288)
8 PRK03934 phosphatidylserine de 100.0 2.3E-49 5E-54 396.7 17.9 189 346-542 4-196 (265)
9 PRK09629 bifunctional thiosulf 100.0 2.6E-47 5.7E-52 421.6 16.5 190 347-542 339-533 (610)
10 TIGR00163 PS_decarb phosphatid 100.0 3.4E-45 7.3E-50 361.7 14.5 159 379-541 1-162 (238)
11 PF02666 PS_Dcarbxylase: Phosp 100.0 4.1E-40 8.9E-45 318.8 14.1 148 392-543 1-149 (202)
12 KOG2420 Phosphatidylserine dec 100.0 6.6E-38 1.4E-42 309.4 11.1 185 346-542 87-306 (382)
13 COG0688 Psd Phosphatidylserine 100.0 7.3E-38 1.6E-42 306.9 9.9 172 347-542 13-185 (239)
14 TIGR00164 PS_decarb_rel phosph 99.9 3.8E-23 8.3E-28 197.8 12.5 116 389-541 15-132 (189)
15 PRK05305 phosphatidylserine de 99.9 1.4E-21 3.1E-26 189.4 12.4 117 392-542 37-153 (206)
16 KOG0027 Calmodulin and related 99.5 1.2E-13 2.6E-18 127.8 12.3 118 122-247 10-136 (151)
17 COG5126 FRQ1 Ca2+-binding prot 99.5 5.9E-13 1.3E-17 122.6 12.2 122 116-246 15-142 (160)
18 KOG0028 Ca2+-binding protein ( 99.3 1.1E-11 2.4E-16 112.0 11.8 127 112-246 24-156 (172)
19 COG5126 FRQ1 Ca2+-binding prot 99.3 1.7E-11 3.8E-16 112.9 9.9 98 119-220 55-156 (160)
20 KOG0027 Calmodulin and related 99.2 4.4E-11 9.5E-16 110.6 10.8 102 119-220 43-149 (151)
21 PTZ00183 centrin; Provisional 99.1 1E-09 2.2E-14 101.2 13.1 115 122-244 19-138 (158)
22 PTZ00183 centrin; Provisional 99.1 1.3E-09 2.7E-14 100.6 11.6 97 122-221 55-155 (158)
23 PTZ00184 calmodulin; Provision 99.0 2.7E-09 5.9E-14 97.1 12.6 114 122-243 13-131 (149)
24 KOG0030 Myosin essential light 99.0 2.3E-09 5E-14 94.8 10.1 113 121-241 12-133 (152)
25 KOG0028 Ca2+-binding protein ( 99.0 2.5E-09 5.3E-14 96.9 9.8 95 122-220 71-170 (172)
26 PF13499 EF-hand_7: EF-hand do 99.0 1.9E-09 4.1E-14 85.0 7.5 61 158-218 2-66 (66)
27 PTZ00184 calmodulin; Provision 99.0 3.8E-09 8.2E-14 96.1 10.5 99 121-219 48-147 (149)
28 KOG0031 Myosin regulatory ligh 98.9 1.3E-08 2.9E-13 91.6 11.4 101 119-227 30-136 (171)
29 cd05022 S-100A13 S-100A13: S-1 98.9 6.2E-09 1.4E-13 87.4 8.3 67 155-221 7-76 (89)
30 KOG0034 Ca2+/calmodulin-depend 98.9 8.7E-09 1.9E-13 98.1 10.0 101 122-222 68-177 (187)
31 KOG0044 Ca2+ sensor (EF-Hand s 98.8 1.4E-08 3E-13 96.9 8.1 98 122-221 66-176 (193)
32 cd05027 S-100B S-100B: S-100B 98.7 5.3E-08 1.2E-12 81.7 8.9 66 156-221 8-80 (88)
33 KOG0044 Ca2+ sensor (EF-Hand s 98.7 8.1E-08 1.8E-12 91.6 10.4 124 122-248 28-163 (193)
34 KOG0037 Ca2+-binding protein, 98.7 1.6E-07 3.4E-12 89.7 10.9 97 122-227 59-159 (221)
35 cd05026 S-100Z S-100Z: S-100Z 98.7 1.3E-07 2.8E-12 80.2 9.3 66 156-221 10-82 (93)
36 smart00027 EH Eps15 homology d 98.7 1.4E-07 3E-12 80.4 9.2 70 150-221 4-73 (96)
37 KOG0037 Ca2+-binding protein, 98.6 1.9E-07 4.1E-12 89.2 10.3 91 122-222 96-190 (221)
38 cd05031 S-100A10_like S-100A10 98.6 1.8E-07 3.9E-12 79.4 8.7 65 157-221 9-80 (94)
39 cd05029 S-100A6 S-100A6: S-100 98.6 2.2E-07 4.8E-12 77.9 8.5 68 155-222 9-81 (88)
40 cd05025 S-100A1 S-100A1: S-100 98.6 2.6E-07 5.6E-12 78.1 8.9 66 156-221 9-81 (92)
41 PF13833 EF-hand_8: EF-hand do 98.6 1.6E-07 3.6E-12 71.0 6.4 52 169-220 1-53 (54)
42 cd00213 S-100 S-100: S-100 dom 98.6 2.9E-07 6.3E-12 77.0 8.4 69 153-221 5-80 (88)
43 KOG0036 Predicted mitochondria 98.6 6.6E-07 1.4E-11 92.4 12.5 93 122-220 53-146 (463)
44 cd00052 EH Eps15 homology doma 98.6 2.9E-07 6.3E-12 72.3 7.8 61 159-221 2-62 (67)
45 KOG1030 Predicted Ca2+-depende 98.5 1E-07 2.2E-12 87.9 4.5 52 50-101 2-59 (168)
46 cd04016 C2_Tollip C2 domain pr 98.5 1E-07 2.2E-12 84.9 4.3 51 53-103 1-57 (121)
47 cd00051 EFh EF-hand, calcium b 98.5 4.7E-07 1E-11 68.6 7.4 61 158-218 2-62 (63)
48 cd05023 S-100A11 S-100A11: S-1 98.4 1.1E-06 2.5E-11 73.8 8.7 67 155-221 8-81 (89)
49 PF13499 EF-hand_7: EF-hand do 98.4 7.8E-07 1.7E-11 70.0 6.2 61 122-182 2-66 (66)
50 KOG0036 Predicted mitochondria 98.3 1.4E-06 3E-11 90.0 8.8 149 122-282 16-192 (463)
51 KOG0034 Ca2+/calmodulin-depend 98.3 2.8E-06 6E-11 81.1 10.3 121 122-247 35-162 (187)
52 cd04039 C2_PSD C2 domain prese 98.3 5.5E-07 1.2E-11 78.5 4.6 48 54-101 1-58 (108)
53 cd00252 SPARC_EC SPARC_EC; ext 98.3 2.4E-06 5.3E-11 75.3 8.3 60 155-218 47-106 (116)
54 KOG0031 Myosin regulatory ligh 98.3 4.3E-06 9.3E-11 75.6 9.7 66 152-221 28-93 (171)
55 cd08375 C2_Intersectin C2 doma 98.3 6.7E-07 1.4E-11 81.3 4.5 51 53-103 14-70 (136)
56 cd04032 C2_Perforin C2 domain 98.3 1E-06 2.2E-11 79.1 5.3 60 42-101 16-80 (127)
57 cd08379 C2D_MCTP_PRT_plant C2 98.1 1.6E-06 3.4E-11 77.8 3.3 49 55-103 1-58 (126)
58 cd05030 calgranulins Calgranul 98.1 1.4E-05 3.1E-10 67.0 8.0 66 156-221 8-80 (88)
59 PF00036 EF-hand_1: EF hand; 98.1 3.8E-06 8.3E-11 55.2 3.4 27 194-220 2-28 (29)
60 cd05022 S-100A13 S-100A13: S-1 98.1 7.4E-06 1.6E-10 68.8 5.9 60 122-185 10-76 (89)
61 PF14658 EF-hand_9: EF-hand do 98.0 1.2E-05 2.6E-10 63.0 6.3 61 160-220 2-64 (66)
62 cd08391 C2A_C2C_Synaptotagmin_ 98.0 4.6E-06 9.9E-11 73.5 3.9 50 54-103 1-62 (121)
63 cd04038 C2_ArfGAP C2 domain pr 98.0 5.6E-06 1.2E-10 76.1 4.2 51 53-103 1-56 (145)
64 cd04050 C2B_Synaptotagmin-like 98.0 4.7E-06 1E-10 72.0 3.4 50 55-104 1-56 (105)
65 cd05027 S-100B S-100B: S-100B 98.0 1.7E-05 3.7E-10 66.5 6.6 59 122-184 10-79 (88)
66 cd04024 C2A_Synaptotagmin-like 98.0 5.8E-06 1.2E-10 73.7 3.9 50 54-103 1-58 (128)
67 KOG0038 Ca2+-binding kinase in 98.0 1.9E-05 4.1E-10 70.7 7.0 98 122-222 73-179 (189)
68 cd08682 C2_Rab11-FIP_classI C2 98.0 5.7E-06 1.2E-10 73.9 3.8 48 56-103 1-54 (126)
69 cd04041 C2A_fungal C2 domain f 98.0 6E-06 1.3E-10 72.1 3.8 49 54-102 1-59 (111)
70 KOG0046 Ca2+-binding actin-bun 98.0 2.8E-05 6.2E-10 82.5 9.1 125 149-289 12-140 (627)
71 cd08681 C2_fungal_Inn1p-like C 98.0 5.7E-06 1.2E-10 72.8 3.4 50 54-103 1-57 (118)
72 KOG0041 Predicted Ca2+-binding 97.9 2.7E-05 5.8E-10 73.3 7.8 71 153-223 96-166 (244)
73 cd04046 C2_Calpain C2 domain p 97.9 1.4E-05 3E-10 71.5 4.6 49 53-101 2-56 (126)
74 KOG4223 Reticulocalbin, calume 97.9 4.2E-05 9.2E-10 77.2 8.5 98 123-220 166-269 (325)
75 PF00036 EF-hand_1: EF hand; 97.9 1.7E-05 3.7E-10 52.1 3.6 28 158-185 2-29 (29)
76 cd05026 S-100Z S-100Z: S-100Z 97.9 3.2E-05 7E-10 65.5 6.1 61 122-185 12-82 (93)
77 KOG4223 Reticulocalbin, calume 97.9 3.6E-05 7.9E-10 77.7 7.4 95 122-216 202-301 (325)
78 cd04019 C2C_MCTP_PRT_plant C2 97.8 1.4E-05 3E-10 74.0 3.8 49 55-103 1-56 (150)
79 PLN02964 phosphatidylserine de 97.8 6.7E-05 1.5E-09 83.9 9.9 88 150-245 137-228 (644)
80 cd08376 C2B_MCTP_PRT C2 domain 97.8 1.5E-05 3.2E-10 69.9 3.2 49 55-103 1-55 (116)
81 cd04015 C2_plant_PLD C2 domain 97.8 2.3E-05 4.9E-10 73.2 4.4 37 67-103 56-93 (158)
82 cd05025 S-100A1 S-100A1: S-100 97.7 7.1E-05 1.5E-09 63.1 6.5 61 122-185 11-81 (92)
83 cd08378 C2B_MCTP_PRT_plant C2 97.7 1.9E-05 4.1E-10 70.3 3.1 61 56-116 2-64 (121)
84 cd04044 C2A_Tricalbin-like C2 97.7 2.4E-05 5.3E-10 69.1 3.6 51 53-103 1-60 (124)
85 smart00027 EH Eps15 homology d 97.7 5.7E-05 1.2E-09 64.3 5.7 57 122-184 12-72 (96)
86 cd08686 C2_ABR C2 domain in th 97.7 2.2E-05 4.8E-10 69.2 3.1 61 56-118 1-67 (118)
87 cd05031 S-100A10_like S-100A10 97.7 5.5E-05 1.2E-09 64.1 5.4 61 122-186 10-81 (94)
88 cd04022 C2A_MCTP_PRT_plant C2 97.7 3.2E-05 6.9E-10 69.1 3.9 48 56-103 2-55 (127)
89 cd08677 C2A_Synaptotagmin-13 C 97.7 4.4E-05 9.5E-10 67.5 4.6 55 47-101 7-68 (118)
90 cd04025 C2B_RasA1_RasA4 C2 dom 97.7 3.6E-05 7.8E-10 68.3 3.9 48 56-103 2-55 (123)
91 KOG0377 Protein serine/threoni 97.7 0.00018 3.8E-09 75.1 9.4 66 156-221 547-616 (631)
92 cd08395 C2C_Munc13 C2 domain t 97.7 4.5E-05 9.7E-10 67.8 4.4 48 56-103 2-61 (120)
93 PF14658 EF-hand_9: EF-hand do 97.6 0.00011 2.4E-09 57.7 5.6 58 124-184 2-64 (66)
94 cd04036 C2_cPLA2 C2 domain pre 97.6 2.9E-05 6.2E-10 68.6 2.7 49 55-103 1-58 (119)
95 KOG0030 Myosin essential light 97.6 0.00022 4.7E-09 63.7 7.9 94 152-246 7-102 (152)
96 cd05029 S-100A6 S-100A6: S-100 97.6 0.00015 3.2E-09 60.9 6.3 60 122-185 12-80 (88)
97 KOG0038 Ca2+-binding kinase in 97.6 7.1E-05 1.5E-09 67.1 4.5 97 152-248 67-165 (189)
98 cd08381 C2B_PI3K_class_II C2 d 97.6 5.9E-05 1.3E-09 67.1 4.0 49 53-101 12-70 (122)
99 cd04011 C2B_Ferlin C2 domain s 97.6 6.5E-05 1.4E-09 65.5 4.1 47 55-101 5-53 (111)
100 cd08377 C2C_MCTP_PRT C2 domain 97.6 7.1E-05 1.5E-09 65.8 4.2 49 54-102 1-55 (119)
101 cd08382 C2_Smurf-like C2 domai 97.6 5.2E-05 1.1E-09 67.5 3.4 48 56-103 2-56 (123)
102 cd04042 C2A_MCTP_PRT C2 domain 97.6 6.3E-05 1.4E-09 66.6 3.9 48 56-103 2-56 (121)
103 cd04037 C2E_Ferlin C2 domain f 97.6 5.3E-05 1.1E-09 67.6 3.3 48 55-102 1-56 (124)
104 cd00052 EH Eps15 homology doma 97.6 0.00017 3.7E-09 56.4 5.8 56 123-184 2-61 (67)
105 cd05024 S-100A10 S-100A10: A s 97.5 0.00069 1.5E-08 56.9 8.9 65 157-222 9-78 (91)
106 cd04031 C2A_RIM1alpha C2 domai 97.5 8.8E-05 1.9E-09 65.8 3.8 53 49-101 11-74 (125)
107 cd04045 C2C_Tricalbin-like C2 97.5 0.00012 2.6E-09 65.0 4.7 48 54-101 1-55 (120)
108 PRK12309 transaldolase/EF-hand 97.5 0.00019 4.2E-09 76.1 6.9 52 156-220 334-385 (391)
109 cd08387 C2A_Synaptotagmin-8 C2 97.5 0.00011 2.4E-09 65.3 4.3 55 47-101 9-72 (124)
110 cd04014 C2_PKC_epsilon C2 doma 97.5 0.00014 3E-09 65.5 5.0 52 52-103 2-70 (132)
111 cd08676 C2A_Munc13-like C2 dom 97.5 0.00012 2.5E-09 68.0 4.2 54 50-103 24-112 (153)
112 cd08394 C2A_Munc13 C2 domain f 97.5 0.00011 2.4E-09 65.7 3.8 50 53-103 1-53 (127)
113 cd08388 C2A_Synaptotagmin-4-11 97.4 0.00012 2.5E-09 65.8 4.0 52 50-101 12-73 (128)
114 cd08384 C2B_Rabphilin_Doc2 C2 97.4 5.8E-05 1.3E-09 67.9 1.8 54 50-103 9-73 (133)
115 cd08405 C2B_Synaptotagmin-7 C2 97.4 5.7E-05 1.2E-09 68.4 1.7 54 48-101 9-73 (136)
116 cd08688 C2_KIAA0528-like C2 do 97.4 0.00012 2.6E-09 63.7 3.7 48 56-103 1-56 (110)
117 cd04049 C2_putative_Elicitor-r 97.4 0.00018 3.8E-09 63.9 4.6 50 54-103 1-57 (124)
118 PF13405 EF-hand_6: EF-hand do 97.4 0.00017 3.7E-09 48.0 3.3 26 158-183 2-27 (31)
119 PF13405 EF-hand_6: EF-hand do 97.4 0.0002 4.4E-09 47.6 3.7 30 193-222 1-31 (31)
120 cd04018 C2C_Ferlin C2 domain t 97.4 0.00014 3.1E-09 67.2 3.9 48 55-102 1-68 (151)
121 cd04020 C2B_SLP_1-2-3-4 C2 dom 97.4 0.00015 3.3E-09 67.9 4.1 50 51-100 24-84 (162)
122 cd04029 C2A_SLP-4_5 C2 domain 97.4 0.00015 3.3E-09 64.8 3.9 57 47-103 8-76 (125)
123 cd00213 S-100 S-100: S-100 dom 97.4 0.00031 6.7E-09 58.6 5.5 61 122-185 10-80 (88)
124 cd04027 C2B_Munc13 C2 domain s 97.4 0.00016 3.5E-09 64.7 4.0 47 55-101 2-54 (127)
125 cd08406 C2B_Synaptotagmin-12 C 97.4 6.8E-05 1.5E-09 68.2 1.5 52 50-101 11-73 (136)
126 cd00051 EFh EF-hand, calcium b 97.4 0.0006 1.3E-08 51.2 6.6 57 122-182 2-62 (63)
127 PF12763 EF-hand_4: Cytoskelet 97.4 0.00058 1.2E-08 59.1 6.9 67 151-220 5-71 (104)
128 cd04054 C2A_Rasal1_RasA4 C2 do 97.4 0.00021 4.7E-09 63.3 4.4 47 56-102 2-55 (121)
129 cd04017 C2D_Ferlin C2 domain f 97.3 0.00026 5.6E-09 64.0 5.0 45 56-100 3-53 (135)
130 cd04010 C2B_RasA3 C2 domain se 97.3 0.00014 2.9E-09 67.2 3.1 48 56-103 2-58 (148)
131 cd08401 C2A_RasA2_RasA3 C2 dom 97.3 0.00021 4.6E-09 63.5 4.3 48 56-103 2-57 (121)
132 cd08400 C2_Ras_p21A1 C2 domain 97.3 0.00026 5.6E-09 63.3 4.7 47 54-101 4-54 (126)
133 PF14788 EF-hand_10: EF hand; 97.3 0.00064 1.4E-08 50.5 5.7 50 172-221 1-50 (51)
134 PF13202 EF-hand_5: EF hand; P 97.3 0.00023 5E-09 45.1 2.9 23 195-217 2-24 (25)
135 cd08385 C2A_Synaptotagmin-1-5- 97.3 0.00027 5.8E-09 62.7 4.2 54 50-103 12-74 (124)
136 cd05023 S-100A11 S-100A11: S-1 97.2 0.00056 1.2E-08 57.5 5.5 61 122-185 11-81 (89)
137 cd04030 C2C_KIAA1228 C2 domain 97.2 0.00028 6.1E-09 62.7 3.9 54 50-103 12-76 (127)
138 KOG0040 Ca2+-binding actin-bun 97.2 0.00041 8.8E-09 81.1 6.0 135 84-219 2210-2360(2399)
139 cd08393 C2A_SLP-1_2 C2 domain 97.2 0.00026 5.7E-09 63.2 3.6 53 50-102 11-75 (125)
140 PF13833 EF-hand_8: EF-hand do 97.2 0.00074 1.6E-08 50.7 5.6 48 134-184 2-53 (54)
141 cd08386 C2A_Synaptotagmin-7 C2 97.2 0.00035 7.7E-09 62.0 4.3 51 51-101 13-72 (125)
142 cd04013 C2_SynGAP_like C2 doma 97.2 0.00031 6.8E-09 64.5 4.0 49 53-101 10-60 (146)
143 cd04043 C2_Munc13_fungal C2 do 97.2 0.00034 7.3E-09 62.2 4.0 49 55-103 2-59 (126)
144 cd04009 C2B_Munc13-like C2 dom 97.2 0.00031 6.6E-09 63.4 3.7 54 50-103 12-78 (133)
145 cd08407 C2B_Synaptotagmin-13 C 97.2 0.00018 3.9E-09 65.5 2.2 55 47-101 8-75 (138)
146 cd04021 C2_E3_ubiquitin_ligase 97.2 0.00041 8.9E-09 61.9 4.4 49 55-103 3-57 (125)
147 cd04052 C2B_Tricalbin-like C2 97.2 0.00026 5.5E-09 61.8 2.7 40 64-103 8-48 (111)
148 cd08685 C2_RGS-like C2 domain 97.1 0.00045 9.8E-09 61.2 4.2 50 52-101 10-69 (119)
149 cd00252 SPARC_EC SPARC_EC; ext 97.1 0.0011 2.3E-08 58.6 6.4 56 122-182 50-106 (116)
150 cd08678 C2_C21orf25-like C2 do 97.1 0.00057 1.2E-08 60.9 4.4 47 56-102 1-53 (126)
151 cd08392 C2A_SLP-3 C2 domain fi 97.1 0.00053 1.1E-08 61.6 4.2 53 50-102 11-75 (128)
152 cd04033 C2_NEDD4_NEDD4L C2 dom 97.1 0.00047 1E-08 61.9 3.9 47 55-101 1-60 (133)
153 PF13202 EF-hand_5: EF hand; P 97.1 0.00059 1.3E-08 43.2 3.1 25 158-182 1-25 (25)
154 cd08408 C2B_Synaptotagmin-14_1 97.1 0.00026 5.7E-09 64.5 1.9 57 47-103 8-76 (138)
155 cd04040 C2D_Tricalbin-like C2 97.0 0.00054 1.2E-08 59.8 3.4 48 56-103 1-55 (115)
156 cd08383 C2A_RasGAP C2 domain ( 97.0 0.00056 1.2E-08 59.8 3.4 47 56-103 2-52 (117)
157 KOG4666 Predicted phosphate ac 97.0 0.0011 2.4E-08 66.9 5.6 97 122-223 261-362 (412)
158 cd08402 C2B_Synaptotagmin-1 C2 97.0 0.00069 1.5E-08 61.2 3.8 51 50-100 11-72 (136)
159 cd08410 C2B_Synaptotagmin-17 C 97.0 0.00075 1.6E-08 61.1 4.1 51 51-101 11-72 (135)
160 PF12588 PSDC: Phophatidylseri 97.0 0.00051 1.1E-08 62.4 2.7 50 318-367 69-123 (141)
161 PLN03200 cellulose synthase-in 96.9 0.00059 1.3E-08 84.4 4.0 57 50-106 1976-2037(2102)
162 cd04028 C2B_RIM1alpha C2 domai 96.9 0.00087 1.9E-08 61.7 4.1 52 52-103 27-90 (146)
163 cd05030 calgranulins Calgranul 96.9 0.0016 3.5E-08 54.5 5.3 61 122-185 10-80 (88)
164 cd08409 C2B_Synaptotagmin-15 C 96.9 0.00046 9.9E-09 62.7 2.1 54 50-103 11-74 (137)
165 cd04051 C2_SRC2_like C2 domain 96.9 0.00086 1.9E-08 59.5 3.7 49 55-103 1-57 (125)
166 cd08521 C2A_SLP C2 domain firs 96.9 0.0012 2.5E-08 58.4 4.5 53 49-101 9-73 (123)
167 cd08390 C2A_Synaptotagmin-15-1 96.9 0.0013 2.7E-08 58.2 4.5 53 49-101 9-71 (123)
168 PF00168 C2: C2 domain; Inter 96.8 0.00066 1.4E-08 55.0 1.7 48 56-103 1-57 (85)
169 cd08403 C2B_Synaptotagmin-3-5- 96.8 0.0015 3.2E-08 58.9 4.1 52 50-101 10-72 (134)
170 cd04035 C2A_Rabphilin_Doc2 C2 96.7 0.002 4.3E-08 57.1 4.4 54 48-101 9-73 (123)
171 cd08404 C2B_Synaptotagmin-4 C2 96.7 0.0016 3.6E-08 58.8 3.9 53 50-102 11-74 (136)
172 cd04026 C2_PKC_alpha_gamma C2 96.6 0.002 4.4E-08 57.7 4.0 50 54-103 13-73 (131)
173 cd08675 C2B_RasGAP C2 domain s 96.6 0.0014 3.1E-08 59.5 2.9 48 56-103 1-57 (137)
174 cd08691 C2_NEDL1-like C2 domai 96.6 0.0026 5.5E-08 57.9 4.3 48 56-103 3-69 (137)
175 cd08373 C2A_Ferlin C2 domain f 96.5 0.0019 4.1E-08 57.6 3.1 39 65-103 11-49 (127)
176 cd08680 C2_Kibra C2 domain fou 96.5 0.002 4.3E-08 57.6 3.1 55 49-103 9-75 (124)
177 KOG2643 Ca2+ binding protein, 96.5 0.004 8.7E-08 65.4 5.6 101 119-221 316-454 (489)
178 KOG0041 Predicted Ca2+-binding 96.5 0.013 2.9E-07 55.5 8.3 93 122-218 101-201 (244)
179 KOG2562 Protein phosphatase 2 96.4 0.0038 8.3E-08 66.0 5.2 95 126-223 284-382 (493)
180 cd08389 C2A_Synaptotagmin-14_1 96.4 0.0025 5.5E-08 56.8 3.3 52 49-101 11-71 (124)
181 PF10591 SPARC_Ca_bdg: Secrete 96.4 0.0017 3.7E-08 57.1 2.0 60 155-216 53-112 (113)
182 KOG2643 Ca2+ binding protein, 96.4 0.0027 5.9E-08 66.6 3.6 67 158-224 235-318 (489)
183 cd04048 C2A_Copine C2 domain f 96.2 0.0025 5.3E-08 56.3 2.0 36 66-101 18-60 (120)
184 cd00275 C2_PLC_like C2 domain 96.1 0.005 1.1E-07 54.6 3.3 49 55-103 3-66 (128)
185 cd08690 C2_Freud-1 C2 domain f 96.1 0.0075 1.6E-07 56.0 4.6 50 54-103 4-64 (155)
186 PF12763 EF-hand_4: Cytoskelet 96.1 0.014 3E-07 50.5 5.8 62 115-183 4-70 (104)
187 cd00276 C2B_Synaptotagmin C2 d 96.1 0.0056 1.2E-07 54.7 3.5 49 52-100 12-71 (134)
188 smart00054 EFh EF-hand, calciu 95.7 0.012 2.7E-07 36.6 3.0 26 194-219 2-27 (29)
189 cd04047 C2B_Copine C2 domain s 95.6 0.018 3.9E-07 49.7 4.9 32 66-97 18-55 (110)
190 KOG0040 Ca2+-binding actin-bun 95.6 0.041 8.8E-07 65.3 8.5 72 150-221 2247-2325(2399)
191 PLN03008 Phospholipase D delta 95.4 0.0097 2.1E-07 68.0 2.7 38 66-103 74-112 (868)
192 KOG4065 Uncharacterized conser 95.3 0.041 8.9E-07 47.7 5.7 58 160-217 71-142 (144)
193 PRK12309 transaldolase/EF-hand 95.3 0.03 6.5E-07 59.7 6.1 49 122-184 336-385 (391)
194 KOG4251 Calcium binding protei 95.2 0.053 1.2E-06 53.0 6.8 96 122-217 238-342 (362)
195 smart00239 C2 Protein kinase C 95.0 0.023 5E-07 46.8 3.5 46 56-101 2-56 (101)
196 smart00054 EFh EF-hand, calciu 95.0 0.03 6.5E-07 34.7 3.1 27 158-184 2-28 (29)
197 KOG0377 Protein serine/threoni 94.9 0.11 2.5E-06 54.8 8.5 96 122-223 466-578 (631)
198 cd05024 S-100A10 S-100A10: A s 94.8 0.1 2.2E-06 43.9 6.6 59 122-185 10-77 (91)
199 COG5038 Ca2+-dependent lipid-b 94.7 0.023 4.9E-07 66.4 3.3 51 53-103 1039-1096(1227)
200 KOG4251 Calcium binding protei 94.5 0.067 1.5E-06 52.3 5.5 66 156-221 101-169 (362)
201 cd08692 C2B_Tac2-N C2 domain s 94.3 0.042 9.2E-07 49.8 3.6 54 48-101 8-73 (135)
202 KOG1011 Neurotransmitter relea 94.3 0.039 8.5E-07 60.4 3.7 67 53-121 294-367 (1283)
203 KOG0751 Mitochondrial aspartat 94.3 0.14 3.1E-06 54.7 7.7 46 172-221 163-208 (694)
204 cd00030 C2 C2 domain. The C2 d 94.1 0.071 1.5E-06 43.4 4.3 48 56-103 1-55 (102)
205 KOG0696 Serine/threonine prote 93.7 0.027 5.9E-07 59.2 1.3 65 54-118 180-256 (683)
206 KOG0751 Mitochondrial aspartat 93.2 0.44 9.6E-06 51.1 9.2 54 165-220 83-136 (694)
207 PF09279 EF-hand_like: Phospho 93.2 0.17 3.6E-06 41.6 4.9 62 158-220 2-69 (83)
208 PF10591 SPARC_Ca_bdg: Secrete 93.1 0.11 2.4E-06 45.6 3.9 53 122-180 56-112 (113)
209 PF14788 EF-hand_10: EF hand; 92.9 0.23 5E-06 37.0 4.7 44 138-185 7-50 (51)
210 COG5038 Ca2+-dependent lipid-b 92.4 0.094 2E-06 61.5 3.1 54 50-103 432-494 (1227)
211 KOG0169 Phosphoinositide-speci 91.6 1.1 2.3E-05 50.9 10.0 93 122-222 138-234 (746)
212 cd08689 C2_fungal_Pkc1p C2 dom 91.2 0.19 4.1E-06 43.5 3.0 64 56-137 1-74 (109)
213 KOG4666 Predicted phosphate ac 90.5 0.44 9.5E-06 48.7 5.3 65 156-220 259-324 (412)
214 PF05042 Caleosin: Caleosin re 90.3 0.9 1.9E-05 42.6 6.8 35 189-223 93-127 (174)
215 KOG1326 Membrane-associated pr 90.2 0.33 7.1E-06 56.1 4.5 78 38-115 596-682 (1105)
216 KOG1955 Ral-GTPase effector RA 89.2 0.88 1.9E-05 48.9 6.5 71 149-221 224-294 (737)
217 KOG2562 Protein phosphatase 2 88.6 1 2.2E-05 48.3 6.5 91 122-216 313-420 (493)
218 KOG1028 Ca2+-dependent phospho 87.9 0.48 1E-05 51.2 3.7 53 50-102 163-224 (421)
219 KOG3555 Ca2+-binding proteogly 87.4 0.9 2E-05 46.8 5.0 61 158-222 252-312 (434)
220 KOG0046 Ca2+-binding actin-bun 86.4 1.4 2.9E-05 48.0 5.9 63 122-186 21-87 (627)
221 KOG4578 Uncharacterized conser 85.5 0.57 1.2E-05 47.9 2.5 67 157-223 334-401 (421)
222 PF05042 Caleosin: Caleosin re 85.1 4.9 0.00011 37.8 8.3 62 156-218 96-164 (174)
223 KOG0169 Phosphoinositide-speci 84.3 2.7 5.9E-05 47.7 7.3 72 152-223 132-203 (746)
224 PLN02223 phosphoinositide phos 84.0 1 2.2E-05 49.8 3.7 49 53-101 408-472 (537)
225 KOG0042 Glycerol-3-phosphate d 83.2 2.5 5.4E-05 46.5 6.2 75 150-224 587-661 (680)
226 KOG1707 Predicted Ras related/ 82.4 5.6 0.00012 44.2 8.5 103 122-224 197-347 (625)
227 KOG1029 Endocytic adaptor prot 81.3 1.9 4.1E-05 48.8 4.6 59 158-218 197-255 (1118)
228 KOG1955 Ral-GTPase effector RA 80.9 2.2 4.8E-05 46.0 4.7 63 116-184 226-293 (737)
229 PRK09439 PTS system glucose-sp 80.4 3.3 7.1E-05 39.0 5.3 52 414-488 21-72 (169)
230 KOG3866 DNA-binding protein of 80.1 2.4 5.2E-05 43.1 4.5 60 159-218 247-322 (442)
231 PLN02952 phosphoinositide phos 77.8 2.1 4.5E-05 48.2 3.7 48 53-100 469-533 (599)
232 KOG4065 Uncharacterized conser 77.6 3.5 7.6E-05 36.1 4.1 60 122-181 69-142 (144)
233 KOG1328 Synaptic vesicle prote 76.5 3 6.6E-05 47.0 4.3 38 84-121 181-218 (1103)
234 PF05517 p25-alpha: p25-alpha 76.3 9.4 0.0002 35.4 7.0 59 165-223 11-72 (154)
235 PLN02270 phospholipase D alpha 75.7 3.6 7.8E-05 47.6 4.8 37 67-103 45-83 (808)
236 PF00358 PTS_EIIA_1: phosphoen 75.6 2.7 5.8E-05 38.0 3.1 51 414-487 3-53 (132)
237 PLN02222 phosphoinositide phos 75.4 2.7 6E-05 47.1 3.7 49 53-101 451-516 (581)
238 KOG1031 Predicted Ca2+-depende 74.6 2 4.4E-05 47.0 2.4 44 54-97 3-53 (1169)
239 cd00210 PTS_IIA_glc PTS_IIA, P 73.1 5.2 0.00011 35.7 4.3 50 416-488 1-50 (124)
240 KOG4347 GTPase-activating prot 73.1 3.9 8.4E-05 45.7 4.1 59 155-214 554-612 (671)
241 KOG1028 Ca2+-dependent phospho 68.6 5.5 0.00012 43.1 4.1 53 47-99 291-354 (421)
242 PLN02228 Phosphoinositide phos 68.2 4.4 9.5E-05 45.4 3.3 49 52-100 429-495 (567)
243 TIGR00830 PTBA PTS system, glu 65.9 9.1 0.0002 34.0 4.2 50 416-488 1-50 (121)
244 PF09069 EF-hand_3: EF-hand; 64.8 40 0.00087 28.4 7.6 63 157-222 4-77 (90)
245 KOG1029 Endocytic adaptor prot 63.5 6.7 0.00015 44.6 3.5 59 122-183 197-256 (1118)
246 COG0688 Psd Phosphatidylserine 61.3 6.4 0.00014 39.3 2.6 39 391-432 62-100 (239)
247 KOG1328 Synaptic vesicle prote 59.7 3.7 8E-05 46.4 0.7 48 56-103 949-1009(1103)
248 KOG2243 Ca2+ release channel ( 58.4 15 0.00033 44.3 5.1 60 160-220 4061-4120(5019)
249 KOG2419 Phosphatidylserine dec 58.1 5.6 0.00012 44.3 1.7 145 50-221 381-579 (975)
250 KOG0035 Ca2+-binding actin-bun 55.5 37 0.0008 39.9 7.7 94 122-216 749-848 (890)
251 PLN02952 phosphoinositide phos 55.3 26 0.00056 39.7 6.4 55 169-224 13-69 (599)
252 PRK10255 PTS system N-acetyl g 54.7 15 0.00033 41.9 4.6 53 413-488 498-550 (648)
253 KOG4578 Uncharacterized conser 52.5 8.5 0.00018 39.7 1.8 57 122-184 335-398 (421)
254 KOG3555 Ca2+-binding proteogly 51.5 17 0.00037 37.8 3.8 64 119-186 249-312 (434)
255 KOG2059 Ras GTPase-activating 50.0 10 0.00022 42.9 2.1 46 56-101 7-59 (800)
256 PF09279 EF-hand_like: Phospho 49.9 37 0.00081 27.4 5.0 45 193-240 1-45 (83)
257 KOG0035 Ca2+-binding actin-bun 49.3 39 0.00084 39.7 6.7 72 153-224 744-820 (890)
258 PF08726 EFhand_Ca_insen: Ca2+ 48.0 16 0.00035 29.1 2.4 29 189-218 3-31 (69)
259 KOG1264 Phospholipase C [Lipid 47.8 19 0.00042 41.4 3.8 43 55-97 1066-1120(1267)
260 PLN02230 phosphoinositide phos 46.8 16 0.00035 41.3 3.1 63 55-117 470-549 (598)
261 cd08374 C2F_Ferlin C2 domain s 44.3 20 0.00044 32.4 2.8 44 56-99 2-60 (133)
262 KOG3866 DNA-binding protein of 43.5 36 0.00078 34.9 4.6 91 122-220 246-354 (442)
263 KOG0042 Glycerol-3-phosphate d 40.6 48 0.001 36.9 5.4 74 110-186 582-659 (680)
264 PF12174 RST: RCD1-SRO-TAF4 (R 40.5 26 0.00057 28.0 2.6 48 172-222 8-55 (70)
265 KOG0998 Synaptic vesicle prote 40.2 15 0.00032 43.5 1.5 68 152-221 279-346 (847)
266 PLN02352 phospholipase D epsil 36.3 41 0.00089 39.0 4.3 49 52-103 8-68 (758)
267 PF05517 p25-alpha: p25-alpha 34.8 1E+02 0.0022 28.5 6.0 44 138-184 24-69 (154)
268 COG3078 Uncharacterized protei 34.7 1.3E+02 0.0028 27.6 6.2 25 180-204 140-166 (169)
269 KOG4004 Matricellular protein 33.5 15 0.00034 35.2 0.3 55 162-218 193-248 (259)
270 PRK05889 putative acetyl-CoA c 33.0 2.1E+02 0.0047 22.3 6.9 24 473-496 39-62 (71)
271 PF14513 DAG_kinase_N: Diacylg 32.3 67 0.0014 29.3 4.2 48 158-205 27-82 (138)
272 KOG4347 GTPase-activating prot 32.2 82 0.0018 35.6 5.6 55 122-178 557-612 (671)
273 cd06850 biotinyl_domain The bi 31.9 2.1E+02 0.0045 21.2 6.5 23 473-495 36-58 (67)
274 COG2190 NagE Phosphotransferas 28.0 1E+02 0.0023 28.6 4.7 52 413-487 5-56 (156)
275 PLN02228 Phosphoinositide phos 25.4 2.1E+02 0.0046 32.3 7.5 61 158-220 26-92 (567)
276 TIGR01848 PHA_reg_PhaR polyhyd 25.2 2.3E+02 0.0049 24.7 5.9 62 163-224 10-81 (107)
277 PF09068 EF-hand_2: EF hand; 24.9 2.3E+02 0.0049 25.4 6.2 63 158-220 43-125 (127)
278 PRK09824 PTS system beta-gluco 24.8 77 0.0017 36.2 4.0 51 415-488 480-530 (627)
279 TIGR01995 PTS-II-ABC-beta PTS 24.8 89 0.0019 35.7 4.4 52 414-488 463-514 (610)
280 PRK06549 acetyl-CoA carboxylas 24.6 3.5E+02 0.0077 24.3 7.4 61 412-495 60-120 (130)
281 PF08414 NADPH_Ox: Respiratory 23.8 2.9E+02 0.0063 23.7 6.2 61 157-222 31-94 (100)
282 PLN02222 phosphoinositide phos 23.7 2.4E+02 0.0052 32.0 7.4 61 158-220 27-90 (581)
283 PF11116 DUF2624: Protein of u 23.5 3.4E+02 0.0073 22.7 6.4 52 171-222 13-64 (85)
284 PF14513 DAG_kinase_N: Diacylg 23.5 92 0.002 28.4 3.5 62 171-238 6-75 (138)
285 PF08672 APC2: Anaphase promot 23.1 1.9E+02 0.004 22.4 4.6 43 179-223 3-47 (60)
286 TIGR03573 WbuX N-acetyl sugar 22.9 1.4E+02 0.0031 31.2 5.4 14 207-220 301-314 (343)
287 PF00404 Dockerin_1: Dockerin 22.4 1.2E+02 0.0027 18.3 2.7 14 202-215 1-14 (21)
288 KOG4286 Dystrophin-like protei 22.2 2.6E+02 0.0055 32.5 7.1 93 122-221 472-581 (966)
289 KOG1707 Predicted Ras related/ 20.9 2E+02 0.0043 32.5 5.9 70 150-219 189-264 (625)
290 cd06663 Biotinyl_lipoyl_domain 20.8 2.6E+02 0.0057 21.6 5.3 25 470-494 39-63 (73)
291 KOG1326 Membrane-associated pr 20.4 22 0.00047 41.9 -1.5 33 65-97 223-255 (1105)
292 PF08349 DUF1722: Protein of u 20.3 4.3E+02 0.0094 23.0 7.1 45 179-223 56-100 (117)
No 1
>PLN02964 phosphatidylserine decarboxylase
Probab=100.00 E-value=2.5e-125 Score=1029.63 Aligned_cols=539 Identities=74% Similarity=1.177 Sum_probs=509.0
Q ss_pred CCCCCCCCcccchhhhHHHHHhhhhhhhhc----cCCCCCCCCCCccccccccccceeEEEEEEeecccccCCceEEEEE
Q 008959 1 MGHGSSKEDESVSRTSRFRKKFHLHRERRR----SRGNGSNSGSHHHNRVLNEEDFAGIALLTLISAEMKFKDKWLACVS 76 (547)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~gi~~i~~~~A~~~~~dd~~~~v~ 76 (547)
||||+|++. ++||+|++++||+.+|+|+| +.++ ++++.++|.+++|+|+||++|+|++|+|.++|+|++|++
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (644)
T PLN02964 1 MGNGNSREA-KESRRSKLRQKLQKFRIRRRHLRCSRGS---SSGSVSQRAVSAEDFSGIALLTLVGAEMKFKDKWLACVS 76 (644)
T ss_pred CCCCCCCcc-ccCCcchHHHHHHHHHHHHHhhhhccCC---CCccccccceecccccCeEEEEeehhhhccCCcEEEEEE
Confidence 999999977 88999999999999666665 3333 445789999999999999999999999999999999999
Q ss_pred cccceEeeeecCCCCCCCchhhHHHHHhcCCCcccceecccC----------------------hHH-HHHHHHhhCCCC
Q 008959 77 LGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFED----------------------SDA-DSEVFDLLDPSS 133 (547)
Q Consensus 77 ~g~~~frT~vi~~tLnP~Wne~~kll~e~~~~~~~~isl~e~----------------------~~e-l~~~F~~~D~d~ 133 (547)
+|.|+|||+++++|+||+||+.++++++.+..+.+.++++|+ |.+ ++++|+.+|+|+
T Consensus 77 ~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dg 156 (644)
T PLN02964 77 FGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSS 156 (644)
T ss_pred ecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999988888777777665 222 788999999999
Q ss_pred CchhHHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHH
Q 008959 134 SNKIVGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDE 213 (547)
Q Consensus 134 dG~Il~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~E 213 (547)
+|.+++.++..++...+++++..+++++|+.+|.|++|.|+++||..++..++...++++++++|+.+|.|++|+|+++|
T Consensus 157 dG~iLg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dE 236 (644)
T PLN02964 157 SNKVVGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDE 236 (644)
T ss_pred CCcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHH
Confidence 99999999999984478888888899999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHhhhccCcccccchhHHHHHhhhcccCcccccccccccCCCccccccCcccccchhhHHHhhhcccccccccccc
Q 008959 214 LAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEGTGNQVMTGGFLTDKQASNVWMFKLSEWGHFSSYDVG 293 (547)
Q Consensus 214 f~~~l~~l~~~~~~~~~~~~~~~~l~~~D~~~~l~~~a~c~~~~~~~~i~~~gf~~~~~a~~~w~~k~l~~~~~~~y~~~ 293 (547)
|.++|....+....+.+||.|++.+...++.++|+|+|+|++|++++++|+++|+|++||+++|++|+++|++||+|++|
T Consensus 237 L~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~~~c~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~~~~~y~~g 316 (644)
T PLN02964 237 LAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHMTLCFDEGTGNQVMTGGFLTDKQASYGWMFKLSEWAHLSTYDVG 316 (644)
T ss_pred HHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHHHHhhcccccceeeccCccchhHHhHHHHHHHHHHHhccccccc
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCce-EEEEEeccCcceeeeeehhhhhhhhhhhccCcccccccchhHHHHHHHHHHHHHHhhCCccccccHHHHHHH
Q 008959 294 LNSGSRA-HILVFDRRTKRLVEELIDVKIVMSMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSVESSKEIPKFVNF 372 (547)
Q Consensus 294 ~~~~~~~-~i~~~~r~~~~~~~e~~~~~~~~~~~~~y~~~~g~~~l~~~~~~~~~~~s~~~g~~~~s~~S~~~I~~fi~~ 372 (547)
++.|+++ +|+|+||.||++++|++++++.++|+|||++++|+.+++++++++|+.+|+++|+++|||+|+..|++||+.
T Consensus 317 ~~~~~~~~~i~~~dR~t~~~~~E~v~~~~~~~~~~lY~~~~G~~~l~~~~~~~l~~~S~~~G~~~dsp~S~~~I~~Fi~~ 396 (644)
T PLN02964 317 LNTGSSASHILVFDRKSKRLVEELIDSKIVLSMRAIYQSKIGLRLMDQGAKEILQRLSEKQGKKMNSVESAQDIPKFLEF 396 (644)
T ss_pred cccCCCcCceEEEECCCCcEEEEEeeeeehhhHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhHcCChhhHHHHHHHHHH
Confidence 9988888 999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccCCCccccCCCCCCCCChhhhhccccCCCCCcCCCCCCCceeeecCCceeeeeeecCCCceEEEcCcccccccccCCC
Q 008959 373 FKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGND 452 (547)
Q Consensus 373 ~~~~i~~~e~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~ 452 (547)
|+++|||+|+++|+.+|+||||||+|+|||++|||+.|+++.++||||||++++|+.|+++..|||||++|||.+|||++
T Consensus 397 ~~~~id~~E~~~p~~~y~SfNdFFtRkLKp~aRPi~~~~~~~~iVSPaDg~v~~~~~i~~~~~~~IKG~~Ysl~~LLg~~ 476 (644)
T PLN02964 397 FKDQINMDEVKYPLEHFKTFNEFFIRELKPGARPIACMDNDDVAVCAADCRLMAFQSVDDSTRFWIKGRKFSIKGLLGKK 476 (644)
T ss_pred hhcCcCHHHhhcCcccCCCHHHcceecCCCCCCCCCCCCCCCEEEECCCceeEEeeeecCCcEEEECCCcccHHHHcCCc
Confidence 87789999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred cccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEEEecCceeccChhhhhccCCCCccceeEEEEEEeecCcceEEEEe
Q 008959 453 ICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYS 532 (547)
Q Consensus 453 ~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a~~~~~~~~~~~N~R~v~~~~t~~~G~v~~v~ 532 (547)
++|++|.||+++++||||.||||||+|++|+|.+.++|||.||||||+|++..++++|++|+|++++|+|+++|+|++|+
T Consensus 477 ~~a~~f~gG~~~i~rLsP~DYHR~HsPv~G~v~~~~~I~G~l~sVnp~al~~~~~~~f~~NeR~v~~iet~~~G~V~~v~ 556 (644)
T PLN02964 477 VHSDAFLDGSLVIFRLAPQDYHRFHVPVSGVIEKFVDVPGSLYTVNPIAVNSKYCNVFTENKRAVCIISTAEFGKVAFVA 556 (644)
T ss_pred hhHHhcCCCEEEEEEECCceeceeecCCCCEEEEEEEECCeeEecChhhhcccccchhhcCeeEEEEEEcCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999765679999999999999999999999999
Q ss_pred ccccccccccc
Q 008959 533 RSHSHSHSRFG 543 (547)
Q Consensus 533 VGa~~v~~~~~ 543 (547)
|||++|||++-
T Consensus 557 VGA~~VgsI~~ 567 (644)
T PLN02964 557 IGATMVGSITF 567 (644)
T ss_pred EeeeEeeEEEE
Confidence 99999999863
No 2
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-101 Score=800.23 Aligned_cols=535 Identities=59% Similarity=0.929 Sum_probs=457.3
Q ss_pred CCCCCCCCcccchhhhHHHHHhhh---hhhhhccCC----CCCCCCCCccccccc--------------cccceeEEEEE
Q 008959 1 MGHGSSKEDESVSRTSRFRKKFHL---HRERRRSRG----NGSNSGSHHHNRVLN--------------EEDFAGIALLT 59 (547)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~--------------~~~~~gi~~i~ 59 (547)
||++++--...++|++..+++.+- +||.++... +.++..++..+++.+ +|++.||+.++
T Consensus 206 M~n~S~s~~~~E~rr~e~~~~~~sf~~err~sip~~~~~~sis~~~gl~~~~s~s~~~~~e~~~~~~~~~dd~~gi~ll~ 285 (975)
T KOG2419|consen 206 MGNGSNSVEGKESRRSEDRNKSQSFRTERRYSIPNDTIFDSISEVVGLNDQRSVSLNDFEEADHPNVHDADDFTGIALLT 285 (975)
T ss_pred hcCcccccchhhhhhhhhhccccceeecccccCCcccccccccccccccccccccccccccccCccccccchhhhhHHHH
Confidence 899855554478999999999887 444444321 334466788999999 89999999999
Q ss_pred Eeecccc----------cCCceEEEEEcccceEeeeecCCCCCCCchhh---------HHHHHhcCCCcccceeccc---
Q 008959 60 LISAEMK----------FKDKWLACVSLGEQTCRTAISDNTDKPIWNSE---------KKLLLETNGPHVARISVFE--- 117 (547)
Q Consensus 60 ~~~A~~~----------~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~---------~kll~e~~~~~~~~isl~e--- 117 (547)
+|+|+|. ++|+|++|+++|+++|||++.+++++|+||+. .+.+. ....+....++.+
T Consensus 286 lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~~~E~~~Fqsn~~l~-~kiv~~~~~~lndS~A 364 (975)
T KOG2419|consen 286 LIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNEDEREDSDFQSNRYLG-NKIVGYCELDLNDSYA 364 (975)
T ss_pred HhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhcccccccccccccccccchhhHHHh-hhccccccccccchhh
Confidence 9999876 99999999999999999999999999999992 22222 0000111111111
Q ss_pred -------------ChHH-HHHHHHhhCCCCCc-----------------hh---HHHHhhhcCCCCCChHHHHHHHHHHH
Q 008959 118 -------------DSDA-DSEVFDLLDPSSSN-----------------KI---VGKISLSCSVEDPIETEKSFARRILS 163 (547)
Q Consensus 118 -------------~~~e-l~~~F~~~D~d~dG-----------------~I---l~~ll~~l~~~~~~~~e~~~l~~~f~ 163 (547)
.+.+ -...|.+.|+.... .+ ++..+..+..+++.+.+..+..+++.
T Consensus 365 ~f~vq~~~sn~~~~~pE~~~~sfnl~~~a~sn~~a~r~~~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s 444 (975)
T KOG2419|consen 365 NFVVQRAKSNFFISEPESTCKSFNLLDPASSNLPALRNRLSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILS 444 (975)
T ss_pred hhhhhhhhccccccCccccceEEEeecCCcccchhhhhccCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhccc
Confidence 0111 23334444433222 11 55555666666777777777888999
Q ss_pred hhcCCCCCcccHHHHHHHHHhcCCcchHHH---------HHHHHHHhcCCCC-----------------------CCcCH
Q 008959 164 IVDYNQDGQLSFKEFSDLISAFGNQVAANK---------KEELFKAADKNGD-----------------------GVVSV 211 (547)
Q Consensus 164 ~~D~d~dG~Is~~Ef~~~l~~lg~~~~~ee---------l~~~F~~~D~d~d-----------------------G~Is~ 211 (547)
.+|.+.++.+++.+|.++..+++..+...+ ...+|..+|.+++ |.++.
T Consensus 445 ~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~~~vtV 524 (975)
T KOG2419|consen 445 IVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSFGVVTV 524 (975)
T ss_pred ccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccccCeeEH
Confidence 999999999999999999888775444333 5678999999999 99999
Q ss_pred HHHHHHHHh-------------hhccCcc----------------------------------cccchhHHHHHhh-hcc
Q 008959 212 DELAALLAL-------------QQEKEPL----------------------------------MNCCPVCGETLEV-ADM 243 (547)
Q Consensus 212 ~Ef~~~l~~-------------l~~~~~~----------------------------------~~~~~~~~~~l~~-~D~ 243 (547)
||+..+++. +.++.+. +..||.|.+.+.. .+.
T Consensus 525 De~v~ll~~~i~~V~~~~er~tq~~q~p~~n~~n~~~~~~Qs~~r~q~~E~~qs~~~~~~~~~i~nCP~C~~~~~~~~~~ 604 (975)
T KOG2419|consen 525 DELVALLALDIIQVMLYLERLTQQEQEPIINHFNKSAWAGQSITRSQLVEGLQSWRKSTNFKRIWNCPVCGEALQPTRDK 604 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchhhcccCCCCCccccchhhhhhhhhcccccccceeecCCccHHhhhccchhh
Confidence 999998882 2222222 3489999998654 478
Q ss_pred cCcccccccccccCCCccccccCcccccchhhHHHhhhccccccccccccCCCCCceEEEEEeccCcceeeeeehhhhhh
Q 008959 244 VNTMIHLTLCFDEGTGNQVMTGGFLTDKQASNVWMFKLSEWGHFSSYDVGLNSGSRAHILVFDRRTKRLVEELIDVKIVM 323 (547)
Q Consensus 244 ~~~l~~~a~c~~~~~~~~i~~~gf~~~~~a~~~w~~k~l~~~~~~~y~~~~~~~~~~~i~~~~r~~~~~~~e~~~~~~~~ 323 (547)
.+-++|+|+|++|+++|+.|+++|++..||+++||+|+++|++||+|++| .++|+|+|+||+||+++||+++.++.+
T Consensus 605 ~~a~iH~a~C~~~~~~~~~m~~syvs~~qAs~rWfsK~~~k~~ygty~vG---Ss~a~ilVqdR~Tg~ivEEki~a~V~l 681 (975)
T KOG2419|consen 605 LNAMIHMALCFDEGTGNQTMTGSYVSDRQASYRWFSKLSEKTHYGTYDVG---SSAANILVQDRKTGRIVEEKIDAKVVL 681 (975)
T ss_pred hhhheeeeeeeccccCceeeeccccchhhHHHHHHHHHHHHhhccceecC---CCcceEEEEecccchHHHHhhcceeee
Confidence 88899999999999999999999999999999999999999999999999 456699999999999999999999999
Q ss_pred hhhhhccCcccccccchhHHHHHHHHHHHHHHhhCCccccccHHHHHHHhccCCCccccCCCCCCCCChhhhhccccCCC
Q 008959 324 SMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSVESSKEIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPG 403 (547)
Q Consensus 324 ~~~~~y~~~~g~~~l~~~~~~~~~~~s~~~g~~~~s~~S~~~I~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~lk~~ 403 (547)
+||+||++..|+.+++..++.+|+.+|.++|++|||++|++.|++||++| .+||+|...|+.+|+||||||+|+||||
T Consensus 682 gmR~iY~gk~~~r~~~~k~k~iL~~Ls~kQGkK~dS~~Sak~I~pFi~Ff--~lnm~ev~~p~~~FKTFNEFFyRkLKPG 759 (975)
T KOG2419|consen 682 GMRAIYQGKIGLRLMDQKAKEILQTLSEKQGKKMDSVESAKQIPPFIEFF--KLNMAEVKYPLKHFKTFNEFFYRKLKPG 759 (975)
T ss_pred ehhhhhcccccchhhhhhHHHHHHHHHHHhccccCchhhhhhcchHHhhh--hcchhhhcCccccchhHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999 6999999999999999999999999999
Q ss_pred CCcCCCCCCCceeeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCCCceeeecCcCeE
Q 008959 404 ARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGI 483 (547)
Q Consensus 404 ~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~ 483 (547)
+||++.+++++++|||||||+++|+.|++.+.|||||..|||+.|||...-+++|.+|+++|+||+|+||||||+||+|.
T Consensus 760 sRp~a~~nn~dIlvspADsR~~af~~Ie~st~~WIKGrkFsik~Llg~n~n~~~F~dgSi~IfRLAPQDYHRFHsPvnG~ 839 (975)
T KOG2419|consen 760 SRPIACMNNKDILVSPADSRLMAFQSIEDSTRFWIKGRKFSIKGLLGYNVNPEAFLDGSIVIFRLAPQDYHRFHSPVNGV 839 (975)
T ss_pred CcccCCCCCCceeecccccceEeeeeecccceEEEeccEEehhHhhCCCCCchhccCCcEEEEEeccchhhhccCccccc
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred EeEEEEecCceeccChhhhhccCCCCccceeEEEEEEeecCcceEEEEecccccccccc
Q 008959 484 IEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 542 (547)
Q Consensus 484 v~~~~~i~G~~~~v~p~a~~~~~~~~~~~N~R~v~~~~t~~~G~v~~v~VGa~~v~~~~ 542 (547)
|.+..++.|.||+|||+|+++ |.+||+||.|+++.|++.+||+|++|+||||+|||.+
T Consensus 840 Igk~v~v~G~yYTVNPmAvrS-yldVFgEN~RviipIds~eFGKv~~VaiGAmMVGSi~ 897 (975)
T KOG2419|consen 840 IGKFVYVSGSYYTVNPMAVRS-YLDVFGENKRVIIPIDSAEFGKVAFVAIGAMMVGSIL 897 (975)
T ss_pred ccCceEecceEEEechHHHHh-hhhhhcCceEEEEEecchhhccEEEEeecceeeeeEE
Confidence 999999999999999999986 7999999999999999999999999999999999974
No 3
>PRK00723 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=2.5e-60 Score=481.40 Aligned_cols=233 Identities=37% Similarity=0.614 Sum_probs=218.8
Q ss_pred EEEEEeccCcceeeeeehhhhhhhhhhhccCcccccccchhHHHHHHHHHHHHHHhhCCccccccHHHHHHHhccCCCcc
Q 008959 301 HILVFDRRTKRLVEELIDVKIVMSMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSVESSKEIPKFVNFFKDQINLA 380 (547)
Q Consensus 301 ~i~~~~r~~~~~~~e~~~~~~~~~~~~~y~~~~g~~~l~~~~~~~~~~~s~~~g~~~~s~~S~~~I~~fi~~~~~~i~~~ 380 (547)
+|+|+||.||+.++|+++++. .++|+|+++.|+.+|..++. .+.+|+++|+++++|.|+..|++|++.| +|||+
T Consensus 1 ~~~~~~r~~~~~~~e~~~~~~--~~~~~y~~~~gr~~l~~l~~--~~~~S~~~G~~~~~~~s~~~I~~f~~~~--~id~~ 74 (297)
T PRK00723 1 MIKYYNRKTKKYEIEKVAGEK--YLKWLYSSPIGKNLLELLIK--KKIFSKIYGWYCDSRLSRKKIKPFVNDF--NIDMS 74 (297)
T ss_pred CcEEEECCCCceEEEeccHHH--HHHHHhcCHHHHHHHHHhcC--cHHHHHHHHHHhCCcchHHHHHHHHHHh--CCCHH
Confidence 378999999999999988876 48999999999988877554 1459999999999999999999999998 89999
Q ss_pred ccCCCCCCCCChhhhhccccCCCCCcCCCCCCCceeeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCC
Q 008959 381 DVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLN 460 (547)
Q Consensus 381 e~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~ 460 (547)
|++.|+++|+||||||+|+|||++|||+. ++.++||||||+|+++++|+++..+||||++|||.+|||++++|++|.+
T Consensus 75 e~~~~~~~y~sfn~FFtR~lk~~~Rpi~~--~~~~ivSPaDg~v~~~~~i~~~~~~~vKG~~Ysl~~LLg~~~~a~~f~~ 152 (297)
T PRK00723 75 ESEKPLSDFKSFNDFFTRKLKPEARPIDQ--GENILISPGDGRLLAYENIDLNSLFQVKGKTYSLKELLGDPELAKKYAG 152 (297)
T ss_pred HhhcChhhCCCHHHceeecCCCCCCCCCC--CCCEEEECCCcEEEEEEEEcCCCeEEEcCceeeHHHHcCChhHHHhcCC
Confidence 99999999999999999999999999975 5688999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCceeeecCcCeEEeEEEEecCceeccChhhhhccCCCCccceeEEEEEEeecCcceEEEEecccccccc
Q 008959 461 GTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHS 540 (547)
Q Consensus 461 G~~~~~~Lsp~dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a~~~~~~~~~~~N~R~v~~~~t~~~G~v~~v~VGa~~v~~ 540 (547)
|+++++||||.||||||+|++|+|.+.++|||.||+|||.++... +++|++|||.+++++|+++|+|++|+|||++||+
T Consensus 153 G~~~~~yLsp~DYHR~HsPv~G~v~~~~~i~G~l~~V~p~~l~~~-~~~f~~NeR~v~~i~t~~~G~v~~v~VGa~~Vgs 231 (297)
T PRK00723 153 GTCLILRLCPTDYHRFHFPDSGICEETRKIKGHYYSVNPIALKKI-FELFCENKREWSIFKSENFGDILYVEVGATCVGS 231 (297)
T ss_pred CEEEEEEECCCeEEEEEccCCcEEEEEEEECCeEeecChHHhhcc-ccccccceeEEEEEEcCCCCEEEEEEEhheEeeE
Confidence 999999999999999999999999999999999999999998754 7899999999999999889999999999999999
Q ss_pred cc
Q 008959 541 RF 542 (547)
Q Consensus 541 ~~ 542 (547)
+.
T Consensus 232 I~ 233 (297)
T PRK00723 232 II 233 (297)
T ss_pred EE
Confidence 75
No 4
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=5.2e-52 Score=414.46 Aligned_cols=189 Identities=27% Similarity=0.422 Sum_probs=180.0
Q ss_pred HHHHHHHHhhCCccccccHHHHHHHhccCCCccccCCCCCCCCChhhhhccccCCCCCcCCCCCCCceeeecCCceeeee
Q 008959 348 SISEKQGRKMNSVESSKEIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAF 427 (547)
Q Consensus 348 ~~s~~~g~~~~s~~S~~~I~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~ 427 (547)
.+|+++|+++++|.|+..|++|++.| +|||+|++.|+++|+||||||+|+|||++|||+. ++.++||||||++.++
T Consensus 17 ~~s~~~g~~~~~~~s~~~i~~f~~~~--~i~~~e~~~~~~~y~sfn~FF~R~lk~~~Rpi~~--~~~~vvSPaDg~v~~~ 92 (259)
T PRK03140 17 FTSYLLRKFAQSRLSSILIPSYAKVY--QINQDEMEKGLKEYRTLHELFTRKLKEGKRPIDT--DASSIVSPVDGVFADV 92 (259)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHh--CCChHHhccChhcCCCHHHhceecCCCCCCCCCC--CCCEEEeCCCcEEEEE
Confidence 48999999999999999999999999 8999999999999999999999999999999975 5678999999999999
Q ss_pred eecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEEEecCceeccChhhhhccCC
Q 008959 428 KSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYC 507 (547)
Q Consensus 428 ~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a~~~~~~ 507 (547)
++|+++..+||||++|||.+||+++.++++|.||+++++||||.||||||+|++|+|.+.++++|.||||||.++... +
T Consensus 93 ~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~i~Lsp~DYHr~h~Pv~G~v~~~~~i~G~l~~V~~~~~~~~-~ 171 (259)
T PRK03140 93 GPIEDDKTFDVKGKRYSIAEMLGNEERAQRYAGGTYMVLYLSPSHYHRIHSPISGTVTEQFVLGRKSYPVNALGLEYG-K 171 (259)
T ss_pred eecCCCCEEEECCceeeHHHhcCChhHHhhhcCCeEEEEEECccceEEEeccCCcEEEEEEECCCceeccCHHHhhcC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987643 6
Q ss_pred CCccceeEEEEEEeecCcceEEEEecccccccccc
Q 008959 508 NVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 542 (547)
Q Consensus 508 ~~~~~N~R~v~~~~t~~~G~v~~v~VGa~~v~~~~ 542 (547)
++|++|||.++.+++ ++|.|++|+|||++||++.
T Consensus 172 ~~~~~NeR~v~~i~~-~~G~v~~v~Vga~~Vg~I~ 205 (259)
T PRK03140 172 RPLSKNYRSVTEVNS-DGEHMALVKVGAMFVNSIE 205 (259)
T ss_pred ccccccceEEEEEEe-CCceEEEEEEeeEEeeEEE
Confidence 899999999999976 6899999999999999986
No 5
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=7.1e-52 Score=424.75 Aligned_cols=190 Identities=26% Similarity=0.386 Sum_probs=176.9
Q ss_pred HHHHHHHHHhhCCccccc----cHHHHHHHhccCCCccccCCCCCCCCChhhhhccccCCCCCcCCCCCCCceeeecCCc
Q 008959 347 KSISEKQGRKMNSVESSK----EIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADS 422 (547)
Q Consensus 347 ~~~s~~~g~~~~s~~S~~----~I~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg 422 (547)
+.+|+++|++++++.++. .|++|++.| +|||+|++.|+++|+||||||+|+|||++|||+++ ++.++||||||
T Consensus 63 ~~~Srl~G~~a~~~~p~~lr~~ii~~fik~y--~Inl~E~~~~~~~Y~SfndFFtR~lk~~~RPi~~~-~~~~iVSPaDg 139 (353)
T PTZ00403 63 RTRSRITGSIFNIEIPNTYRLPIYNFLIKYM--GINKEEIKYPIESYKSIGDFFSRYIREETRPIGDV-SDYSIVSPCDS 139 (353)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH--CCCHHHhhCChhcCCCHHHceeecccCCCCCCCCC-CCCeEEeCCCc
Confidence 349999999999988764 789999998 89999999889999999999999999999999764 45789999999
Q ss_pred eeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCC----eEEEEEeCCCCceeeecCcCeEEeEEEEecCceeccC
Q 008959 423 RLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNG----TMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVN 498 (547)
Q Consensus 423 ~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G----~~~~~~Lsp~dYHr~h~P~~G~v~~~~~i~G~~~~v~ 498 (547)
+|++++.|+++..+||||++|||.+|||++ ++++|.+| +++++||||.||||||+|++|+|.+.++|||+|||||
T Consensus 140 ~v~~~g~I~~~~~~qvKG~~Ysl~~LLg~~-~a~~~~~g~~~~~~~v~yLsP~DYHR~HsP~~g~v~~~~~IpG~L~pVn 218 (353)
T PTZ00403 140 ELTDYGELSSEYLENVKGVKFNVNTFLGSD-MQKKYNDGSTKFFYAIFYLSPKKYHHFHAPFNFKYKIRRHISGELFPVF 218 (353)
T ss_pred eeEeeeEecCCCEEEeCCCcccHHHHhCch-hHHhhcCCCCcEEEEEEEECcceeeEEeccCceEEEEEEEeCCeEeeeC
Confidence 999999999999999999999999999965 78899998 5999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCccceeEEEEEEeecCcceEEEEecccccccccc
Q 008959 499 PIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 542 (547)
Q Consensus 499 p~a~~~~~~~~~~~N~R~v~~~~t~~~G~v~~v~VGa~~v~~~~ 542 (547)
|.+++. ++++|++|||+|+.++| ++|.|++|+|||++||++.
T Consensus 219 p~~l~~-~~~lf~~NERvv~~~~~-~~G~~~~v~VGA~~VGsI~ 260 (353)
T PTZ00403 219 QGMFKI-INNLFNINERVILSGEW-KGGNVYYAAISAYNVGNIK 260 (353)
T ss_pred HHHHhc-CcccccceEEEEEEeec-CCceEEEEEEeeEEEEEEE
Confidence 999975 58999999999999887 6999999999999999985
No 6
>PLN02938 phosphatidylserine decarboxylase
Probab=100.00 E-value=1.1e-51 Score=430.23 Aligned_cols=210 Identities=26% Similarity=0.373 Sum_probs=189.8
Q ss_pred hhhhhccCcccccccchhHHHHHHHHHHHHHHhhCCc---cccccH-HHHHHHhccCCCccccCCCCCCCCChhhhhccc
Q 008959 324 SMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSV---ESSKEI-PKFVNFFKDQINLADVKYPLEHFKTFNEFFIRE 399 (547)
Q Consensus 324 ~~~~~y~~~~g~~~l~~~~~~~~~~~s~~~g~~~~s~---~S~~~I-~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~ 399 (547)
+++++|+++++..++..+. ++.+|++||++.+++ +++..| +.|++.| +|||+|+++|+++|+||||||+|+
T Consensus 77 g~~~~~~~~~~~~ll~lLP---~r~iSrl~G~~a~~~~P~~lr~~i~~~fa~~f--~inl~E~~~p~~~Y~SfndFFtRk 151 (428)
T PLN02938 77 GIEPEFSPDTKASFLRLLP---LRSISRLWGSLTSVELPVWMRPYVYKAWARAF--HSNLEEAALPLEEYASLREFFVRS 151 (428)
T ss_pred CcccccCCHHHHHHHHHcc---HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--CcCHHHhhcchhhCCCHHHhheec
Confidence 3578999999888777765 456999999999998 677666 9999998 899999999999999999999999
Q ss_pred cCCCCCcCCCCCCCceeeecCCceeeeeeecCC--CceEEEcCcccccccccCCCcc-----------------------
Q 008959 400 LKPGARPIDCMEREEVAVCAADSRLMAFKSVED--SLRFWIKGQKFSIQGLLGNDIC----------------------- 454 (547)
Q Consensus 400 lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~--~~~~~iKg~~ysl~~lL~~~~~----------------------- 454 (547)
|||++|||+. ++.++||||||+|++++.|++ +..++|||++|||.+|||++..
T Consensus 152 LKpgaRPid~--d~~~iVSPaDG~v~~~g~I~~~~~~~~qVKG~~YSL~~LLG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (428)
T PLN02938 152 LKEGARPIDP--DPNCLVSPVDGIVLRFGELKGPGTMIEQVKGFSYSVSALLGANSLLPMTAEGKEEKEEETLKDKSSKS 229 (428)
T ss_pred cCCCCCcCCC--CCCeEEeccCCceEEeeeecCCCceEEEecCCcccHHHHcCCCcccccccccccchhhccccccccch
Confidence 9999999984 678899999999999999975 4689999999999999996543
Q ss_pred ----------------cCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEEEecCceeccChhhhhccCCCCccceeEEEE
Q 008959 455 ----------------SNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVS 518 (547)
Q Consensus 455 ----------------a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a~~~~~~~~~~~N~R~v~ 518 (547)
++.+.||+++++||||.||||||+|++|+|.+.+||||+||||||.+++. ++++|++|||+|+
T Consensus 230 ~~~~~~~~~~~~~~~~a~~~~g~~~~ViYLsP~DYHR~HsP~dg~v~~~rhipG~L~sVnp~~~~~-i~~LF~~NERvVl 308 (428)
T PLN02938 230 WLRVSLASPKLRDPVSASPMKGLFYCVIYLGPGDYHRIHSPSDWNIEVRRHFSGRLFPVNERATRT-IRNLYVENERVVL 308 (428)
T ss_pred hhhhhhccccccccccccccCCcEEEEEEeCccccceEeecCCcEEEEEEEcCCcccccCHHHHhh-CCCccccceEEEE
Confidence 36688999999999999999999999999999999999999999999874 5899999999999
Q ss_pred EEeecCcceEEEEecccccccccc
Q 008959 519 IISTAHFGKVCHYSRSHSHSHSRF 542 (547)
Q Consensus 519 ~~~t~~~G~v~~v~VGa~~v~~~~ 542 (547)
..++ ++|.|++|+|||++|||+.
T Consensus 309 ~g~w-~~G~~a~v~VGAtnVGsI~ 331 (428)
T PLN02938 309 EGEW-QEGFMAMAAVGATNIGSIE 331 (428)
T ss_pred Eeec-CCceEEEEEEeeeEEEEEE
Confidence 8887 7999999999999999976
No 7
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=100.00 E-value=4.1e-51 Score=414.29 Aligned_cols=190 Identities=32% Similarity=0.595 Sum_probs=179.1
Q ss_pred HHHHHHHHHhhCCc---cccccHHHHHHHhccCCCccccCCC-CCCCCChhhhhccccCCCCCcCCCCCCCceeeecCCc
Q 008959 347 KSISEKQGRKMNSV---ESSKEIPKFVNFFKDQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADS 422 (547)
Q Consensus 347 ~~~s~~~g~~~~s~---~S~~~I~~fi~~~~~~i~~~e~~~p-~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg 422 (547)
+.+|+++|++++++ .|+..|++|++.| +|||+|+++| +++|+||||||+|+|||++|||+. ++.++||||||
T Consensus 16 ~~~Sr~~g~~~~~~~~~~~~~~i~~f~~~~--~i~~~E~~~~~~~~y~s~~~FF~R~lk~~~Rpi~~--~~~~ivSPaDG 91 (288)
T PRK00044 16 HLLTRLAGWLASSRAGWLTTAVIRLFIKKY--KVDMSEAQKPDPAAYKTFNDFFTRALKDGARPIDE--DPNALVSPADG 91 (288)
T ss_pred HHHHHHHHHHHcCCCccchHHHHHHHHHHh--CCCHHHHccCChhhCCCHHHhceecccCCCCCCCC--CCCEEEeCCCc
Confidence 45999999999999 8999999999999 8999998865 899999999999999999999985 56789999999
Q ss_pred eeeeeeecCCCceEEEcCcccccccccC-CCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEEEecCceeccChhh
Q 008959 423 RLMAFKSVEDSLRFWIKGQKFSIQGLLG-NDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIA 501 (547)
Q Consensus 423 ~~~~~~~i~~~~~~~iKg~~ysl~~lL~-~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a 501 (547)
+|+++++|+++..+||||++|||++||| ++.++++|.||+++++||||.||||||+|++|+|.+.+||||.||+|||.+
T Consensus 92 ~v~~~~~i~~~~~~~vKG~~Ysl~~lL~~~~~~~~~~~~G~~i~iyLsp~DYHr~HsPv~G~v~~~~~i~G~~~~v~~~~ 171 (288)
T PRK00044 92 AISQLGPIEDGQIFQAKGHSYSLEALLGGDAALADPFRNGSFATIYLSPRDYHRVHMPCDGTLREMIYVPGDLFSVNPLT 171 (288)
T ss_pred eEEeEEeecCCCEEEECCceeeHHHHcCCChHHHHhcCCCEEEEEEECcceeeEEeccCCcEEEEEEEeCCcccccCHHH
Confidence 9999999999999999999999999998 678899999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCccceeEEEEEEeecCcceEEEEecccccccccc
Q 008959 502 VNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 542 (547)
Q Consensus 502 ~~~~~~~~~~~N~R~v~~~~t~~~G~v~~v~VGa~~v~~~~ 542 (547)
++. ++++|++|||+++.++|+ +|.|++|+|||++|||+.
T Consensus 172 ~~~-~~~lf~~NeR~v~~i~t~-~G~v~~v~VGA~~VGsI~ 210 (288)
T PRK00044 172 ARN-VPNLFARNERVVCLFDTE-FGPMAQVLVGATIVGSIE 210 (288)
T ss_pred hcc-CCCccceeeEEEEEEECC-CCcEEEEEEeeEeecceE
Confidence 864 589999999999999995 899999999999999864
No 8
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=2.3e-49 Score=396.72 Aligned_cols=189 Identities=28% Similarity=0.378 Sum_probs=173.6
Q ss_pred HHHHHHHHHHhhCCccccc----cHHHHHHHhccCCCccccCCCCCCCCChhhhhccccCCCCCcCCCCCCCceeeecCC
Q 008959 346 LKSISEKQGRKMNSVESSK----EIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAAD 421 (547)
Q Consensus 346 ~~~~s~~~g~~~~s~~S~~----~I~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaD 421 (547)
++.+|+++|++++++.|+. .|++|++.| +|||+|++ ++++|+||||||+|+|||+ |||+. ++.++|||||
T Consensus 4 ~~~~S~~~g~~~~~~~~~~~~~~~i~~f~~~~--~i~~~e~~-~~~~y~sfn~FF~R~lk~~-Rpi~~--~~~~ivSPaD 77 (265)
T PRK03934 4 SNALSRIFGKFAGYKFPKFIQKFINASYVKIF--KIDMSEFK-PPENYKSLNALFTRSLKKP-REFDE--DPNIFISPCD 77 (265)
T ss_pred hHHHHHHHHHHhcCCCCccchHHHHHHHHHHH--CCCHHHhc-CcccCCCHHHhccccCCCC-CCCCC--CCCEEEECCC
Confidence 4569999999999997654 679999998 89999997 6899999999999999985 99964 5788999999
Q ss_pred ceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEEEecCceeccChhh
Q 008959 422 SRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIA 501 (547)
Q Consensus 422 g~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a 501 (547)
|+|++++.|+++..+||||++|+|.+|||++. +++|.+|+++++||||.||||||+|++|+|.+.+||||.||+|||.+
T Consensus 78 G~v~~~~~i~~~~~~~vKg~~y~l~~lL~~~~-~~~~~~g~~~~iyLsp~dYHr~hsP~~G~v~~~~~ipG~~~~vn~~~ 156 (265)
T PRK03934 78 SLITECGSLEEDKALQIKGMEYSIEELLGESN-SELVNGFDYINFYLSPKDYHRYHAPCDLEILEARYIPGKLYPVNLPS 156 (265)
T ss_pred cEEEEEEEECCCCEEEECCccccHHHHcCCcc-hhhcCCcEEEEEEECcceEEEEeccCCcEEEEEEEcCCeeeccCHHH
Confidence 99999999999999999999999999999874 59999999999999999999999999999999999999999999998
Q ss_pred hhccCCCCccceeEEEEEEeecCcceEEEEecccccccccc
Q 008959 502 VNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 542 (547)
Q Consensus 502 ~~~~~~~~~~~N~R~v~~~~t~~~G~v~~v~VGa~~v~~~~ 542 (547)
+.. .+++|++|||+++.++|+..|.|++|+|||++||++.
T Consensus 157 ~~~-~~~lf~~NeR~v~~~et~~g~~v~~v~VgA~~Vg~I~ 196 (265)
T PRK03934 157 LEK-NKNLFVKNERVVLKCKDKKGKRLYFVFVGALNVGKMR 196 (265)
T ss_pred Hhh-cCccccceeEEEEEEEcCCCCEEEEEEEeeEEeeEEE
Confidence 864 4789999999999999976559999999999999875
No 9
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=2.6e-47 Score=421.61 Aligned_cols=190 Identities=27% Similarity=0.469 Sum_probs=177.8
Q ss_pred HHHHHHHHHhhCCcc---ccccHHHHHHHhccCCCccccC-CCCCCCCChhhhhccccCCCCCcCCCCCCCceeeecCCc
Q 008959 347 KSISEKQGRKMNSVE---SSKEIPKFVNFFKDQINLADVK-YPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADS 422 (547)
Q Consensus 347 ~~~s~~~g~~~~s~~---S~~~I~~fi~~~~~~i~~~e~~-~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg 422 (547)
+.+|+++|++.+++. ++..|++|++.| +|||+|++ +|+++|+||||||+|+|||++|||+. ++.++||||||
T Consensus 339 ~~~S~~~g~~a~~~~~~~~~~~i~~fi~~y--~i~l~E~~~~~~~~y~sfn~FF~R~lk~~~Rpi~~--~~~~ivSPaDg 414 (610)
T PRK09629 339 HLLSRLAGCVAECRVRWFKNAFTAWFARRY--QVDMSQALVEDLTSYEHFNAFFTRALKADARPLDT--TPGAILSPADG 414 (610)
T ss_pred HHHHHHHHHHHhCccHhhHHHHHHHHHHHh--CCCHHHhhccCcccCCCHHHhcccccCCCCCCCCC--CCCeEEecCcc
Confidence 349999999988874 777799999999 89999987 57999999999999999999999975 57889999999
Q ss_pred eeeeeeecCCCceEEEcCcccccccccC-CCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEEEecCceeccChhh
Q 008959 423 RLMAFKSVEDSLRFWIKGQKFSIQGLLG-NDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIA 501 (547)
Q Consensus 423 ~~~~~~~i~~~~~~~iKg~~ysl~~lL~-~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a 501 (547)
+|++++.|+++..|||||++|||.+||| ++.++++|.||+++++||||.||||||+|++|+|.+.+||||+||+|||.+
T Consensus 415 ~v~~~g~i~~~~~~~vKG~~Ysl~eLL~~~~~~~~~~~~G~~~~iyLsP~DYHR~H~Pv~G~v~~~~~ipG~l~sV~~~~ 494 (610)
T PRK09629 415 AISQLGPIDHGRIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLREMVYVPGRIFSVNQTT 494 (610)
T ss_pred ceeeeccccCCcEEEECCCcccHHHHhCCCHHHHhhcCCCeEEEEEECCCeeEEEeecCCcEEEEEEEECCeEEeccHHH
Confidence 9999999999999999999999999998 778899999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCccceeEEEEEEeecCcceEEEEecccccccccc
Q 008959 502 VNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 542 (547)
Q Consensus 502 ~~~~~~~~~~~N~R~v~~~~t~~~G~v~~v~VGa~~v~~~~ 542 (547)
++. .+++|++|||++++++| ++|.|++|+|||++|||+.
T Consensus 495 ~~~-~~~lf~~NeR~v~~i~t-~~G~~~~v~VGA~~VgsI~ 533 (610)
T PRK09629 495 AEN-VPELFARNERVVCLFDT-ERGPMAVVLVGAMIVASVE 533 (610)
T ss_pred hhc-cCccchhceeEEEEEEe-CCCeEEEEEeceEeeeeEE
Confidence 874 48999999999999999 5899999999999999985
No 10
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=100.00 E-value=3.4e-45 Score=361.69 Aligned_cols=159 Identities=32% Similarity=0.566 Sum_probs=149.2
Q ss_pred ccccCC-CCCCCCChhhhhccccCCCCCcCCCCCCCceeeecCCceeeeeeecCCCceEEEcCcccccccccCCC-cccC
Q 008959 379 LADVKY-PLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGND-ICSN 456 (547)
Q Consensus 379 ~~e~~~-p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~-~~a~ 456 (547)
|+|+++ ++.+|+||||||+|+|||++|||+. ++.++||||||+|+.++.|++...+||||++|||.+||+++ .+++
T Consensus 1 ~~e~~~~~~~~y~s~n~FF~R~lk~~~Rpi~~--~~~~ivSPaDG~v~~~~~i~~~~~~~vKG~~ysl~~lL~~~~~~~~ 78 (238)
T TIGR00163 1 LDEAEKPDLADYRSLNEFFIRPLKLERRPVDK--EPNALVSPADGVISEVGIINPNQILQVKGMDYSLEELLGEKNPLSP 78 (238)
T ss_pred CchhccCCcccCCCHHHheeecCCCCCCCCCC--CCCEEEECCCceeEEEEEecCCcEEEEcCCcccHHHHcCCChhHHH
Confidence 578875 5899999999999999999999975 57889999999999999999999999999999999999865 7899
Q ss_pred CcCCCe-EEEEEeCCCCceeeecCcCeEEeEEEEecCceeccChhhhhccCCCCccceeEEEEEEeecCcceEEEEeccc
Q 008959 457 SFLNGT-MVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSH 535 (547)
Q Consensus 457 ~f~~G~-~~~~~Lsp~dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a~~~~~~~~~~~N~R~v~~~~t~~~G~v~~v~VGa 535 (547)
+|.||. ++++||||.||||||+|++|+|.+++||||+||+|||.++.. .+++|++|||+++.++| .+|.|++|+|||
T Consensus 79 ~f~~G~~~i~iyLsp~DYHr~hsPv~G~v~~~~~ipG~~~~v~~~~~~~-~~~lf~~NeR~v~~i~~-~~G~v~~v~VGA 156 (238)
T TIGR00163 79 YFRNGGFFVVTYLSPRDYHRFHSPCDCRLRKMRYFPGDLFSVNPLGLQN-VPNLFVRNERVILVFDT-EFGNMLMIPVGA 156 (238)
T ss_pred hccCCeEEEEEEECccceeEEeccCCcEEEEEEEcCccEeccCHHHHhc-CCCcceeeeEEEEEEEe-CCceEEEEEEee
Confidence 999998 889999999999999999999999999999999999999864 48899999999999998 699999999999
Q ss_pred cccccc
Q 008959 536 SHSHSR 541 (547)
Q Consensus 536 ~~v~~~ 541 (547)
++||++
T Consensus 157 ~~Vg~I 162 (238)
T TIGR00163 157 TNVGSI 162 (238)
T ss_pred eEeeEE
Confidence 999988
No 11
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=100.00 E-value=4.1e-40 Score=318.85 Aligned_cols=148 Identities=39% Similarity=0.597 Sum_probs=140.3
Q ss_pred hhhhhccccCCCCCcCCCCCCCceeeecCCceeeeeeecCCCceEEEcCcccccccccCC-CcccCCcCCCeEEEEEeCC
Q 008959 392 FNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGN-DICSNSFLNGTMVIFRLAP 470 (547)
Q Consensus 392 fn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~-~~~a~~f~~G~~~~~~Lsp 470 (547)
||+||+|+||+++|||+.+ +++++|||||+++++++|+++..+||||++|++.+||++ .++++.|.+|+++++||||
T Consensus 1 f~~FF~r~~r~~~R~i~~~--~~~ivSPaDG~v~~~~~i~~~~~~~iKg~~y~l~~ll~~~~~~~~~~~~g~~i~i~Lsp 78 (202)
T PF02666_consen 1 FNDFFTRFFRDPARPIPDD--PDAIVSPADGKVLVIGEIEEDSLFQIKGQPYSLRELLGDPSPLAEPFQGGTFIVIYLSP 78 (202)
T ss_pred ChhHeehhcCCCCCCCCCC--CCEEEeCcCcEEEeeEEECCCceEEEecCcCCHHHHhCccccceeccCCceEEEEEcCC
Confidence 8999999999999999874 558999999999999999999999999999999999998 7899999999999999999
Q ss_pred CCceeeecCcCeEEeEEEEecCceeccChhhhhccCCCCccceeEEEEEEeecCcceEEEEeccccccccccc
Q 008959 471 QDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRFG 543 (547)
Q Consensus 471 ~dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a~~~~~~~~~~~N~R~v~~~~t~~~G~v~~v~VGa~~v~~~~~ 543 (547)
.||||||+|++|+|.+.++|||.+|+|+|.++... +++|++|||+++++++ ++|+|++++|||++|++++-
T Consensus 79 ~DyHr~haPv~G~v~~~~~i~G~~~~v~~~~~~~~-~~~~~~NeR~~~~i~~-~~G~v~~v~Vga~~v~~I~~ 149 (202)
T PF02666_consen 79 FDYHRNHAPVDGRVEEVRYIPGKLLPVNPPALSHI-PGLFAENERVVLVIET-KFGKVAVVQVGALLVGSIVL 149 (202)
T ss_pred CcceEEEecCCEEEEEEEEECccccccChHHhhcc-CCeeEEeeEEEEEEEE-CCCEEEEEEeccceeceeEE
Confidence 99999999999999999999999999999998754 8999999999999996 79999999999999999753
No 12
>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=6.6e-38 Score=309.35 Aligned_cols=185 Identities=32% Similarity=0.507 Sum_probs=158.9
Q ss_pred HHHHHHHHHHhhCCccccccHHHHHH---------HhccCCCccccCCC-CCCCCChhhhhccccCCCCCcCCCCCCCce
Q 008959 346 LKSISEKQGRKMNSVESSKEIPKFVN---------FFKDQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEV 415 (547)
Q Consensus 346 ~~~~s~~~g~~~~s~~S~~~I~~fi~---------~~~~~i~~~e~~~p-~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~ 415 (547)
|+.+|++||.+.. ..||.|++ .| ++||+|+..| +.+|+||.|||+|+|||++|||++ ...
T Consensus 87 lrtlSR~WG~~n~-----~elP~wlR~~~y~lys~~F--g~NL~Ea~~pDl~hY~nlaeFF~RkLKpg~RpIdp---~~p 156 (382)
T KOG2420|consen 87 LRTLSRVWGQLNS-----LELPVWLRPPGYGLYARTF--GCNLDEAADPDLTHYRNLAEFFTRKLKPGTRPIDP---ASP 156 (382)
T ss_pred hHHHHHHHHhhhh-----eeccchhcchhhhhhhHhh--ccCchhccCchhhhhhhHHHHHhhccCCCCcccCC---CCc
Confidence 6779999998764 34555444 44 8999999988 899999999999999999999986 467
Q ss_pred eeecCCceeeeeeecCCCceEEEcCcccccccccCCC--------cccC--Cc------------CCC---eEEEEEeCC
Q 008959 416 AVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGND--------ICSN--SF------------LNG---TMVIFRLAP 470 (547)
Q Consensus 416 ~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~--------~~a~--~f------------~~G---~~~~~~Lsp 470 (547)
+||||||+|+.|+.|+++..-||||.+|||++|||.. .+.+ +. ..+ +..++||+|
T Consensus 157 iVSPaDGkIL~fG~v~~~~IEqVKG~tYSleafLG~~~~P~~~~~d~~~f~~~~as~~~lk~~~s~~~~~Ly~~VIYLaP 236 (382)
T KOG2420|consen 157 LVSPADGKILHFGVVEDNEIEQVKGHTYSLEAFLGTHSHPSCASVDLPQFARVSASCDELKPSVSRPGTELYQCVIYLAP 236 (382)
T ss_pred eecCCCCcEEEEEEecCceeeEecCeeeeHHHHcCCCCCCccccccccccccccCchhhhhhcCCCcccceeEEEEEccC
Confidence 8999999999999999999999999999999999921 1111 01 112 577889999
Q ss_pred CCceeeecCcCeEEeEEEEecCceeccChhhhhccCCCCccceeEEEEEEeecCcceEEEEecccccccccc
Q 008959 471 QDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 542 (547)
Q Consensus 471 ~dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a~~~~~~~~~~~N~R~v~~~~t~~~G~v~~v~VGa~~v~~~~ 542 (547)
.||||||+|++++++..+|++|.+++|+|.... ..+++|+.|||+++..+. ..|.+.+++|||++|||+.
T Consensus 237 GDYH~fHSP~dWv~t~rRHf~G~l~svsp~~~~-~l~~lf~LnerV~l~G~w-khGFfs~taVGATNvGsI~ 306 (382)
T KOG2420|consen 237 GDYHRFHSPADWVATVRRHFPGLLLSVSPTLAR-WLPNLFCLNERVVLLGSW-KHGFFSMTAVGATNVGSIV 306 (382)
T ss_pred CcccccCChHHhhhhhhhcccCcccccChhhhc-cCCceEEEEEEeeeccee-eeceeeeeeeccCccceEE
Confidence 999999999999999999999999999998765 569999999999988776 7899999999999999975
No 13
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=100.00 E-value=7.3e-38 Score=306.86 Aligned_cols=172 Identities=34% Similarity=0.474 Sum_probs=160.2
Q ss_pred HHHHHHHHHhhCCccccccHHHHHHHhccCCCccccCCCCCCCCChhhhhccccCCCCCcCCCCCCCceeeecCCceeee
Q 008959 347 KSISEKQGRKMNSVESSKEIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMA 426 (547)
Q Consensus 347 ~~~s~~~g~~~~s~~S~~~I~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~ 426 (547)
+.++...|.++.++.++..|.+|+..| .+||+|+..|...|.|||+||+|.+++..||+++ + .++|+||++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~fi~~~--~v~~~e~~~~~~~~~~~~~~f~r~l~~~~Rp~dp----~-~v~P~D~~i~~ 85 (239)
T COG0688 13 RLFGLLAGVRSPSPIIKREIYPFIAAF--LVDMSEAEKPLEPYASLNEFFTRFLKYFFRPIDP----E-RVSPADGRIVV 85 (239)
T ss_pred hhHHHHhhhcCCCceeehhhhhHHHHH--HhhHHHhhhhhhHHHHHHHHHHHHHhcccccCCC----C-ccCCCCCcEEE
Confidence 347788888899999999999999998 8999999988899999999999999999999985 2 79999999999
Q ss_pred eeecCCCceEEEcCcccccccccC-CCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEEEecCceeccChhhhhcc
Q 008959 427 FKSVEDSLRFWIKGQKFSIQGLLG-NDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSK 505 (547)
Q Consensus 427 ~~~i~~~~~~~iKg~~ysl~~lL~-~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a~~~~ 505 (547)
++ +||+.|++++||+ +++++..|.+|+++++||||.||||+|+||+|+|.+++|+||.+++|||.+
T Consensus 86 ~p---------akG~~~sv~~ll~~~~el~~~~~~g~~v~i~Lsp~DyHr~haP~~G~i~~~~~~~G~~~~v~~~~---- 152 (239)
T COG0688 86 SP---------ADGRVYSVEELLGPDDELAYGDRDGTRVSIFLSPFDYHRNHAPVDGTIIEVRYVPGKFFSANLDK---- 152 (239)
T ss_pred ec---------CCCeEEEHHHhcCChhhhccccCCceEEEEEeCcceeeeEeCCCCCEEEEEEEECCceeccChhh----
Confidence 98 8999999999998 558889999999999999999999999999999999999999999999965
Q ss_pred CCCCccceeEEEEEEeecCcceEEEEecccccccccc
Q 008959 506 YCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 542 (547)
Q Consensus 506 ~~~~~~~N~R~v~~~~t~~~G~v~~v~VGa~~v~~~~ 542 (547)
+|++|||++++++|+ .|+|++|+|||++|++.+
T Consensus 153 ---~~~~NER~~~~i~t~-~g~v~~v~Vga~~v~~Iv 185 (239)
T COG0688 153 ---AFTENERNSVLIETE-QGKVVVVQVAGLVARRIV 185 (239)
T ss_pred ---hhcccceEEEEEEcC-CCcEEEEEEhhheeeEEE
Confidence 788999999999995 669999999999999875
No 14
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=99.89 E-value=3.8e-23 Score=197.80 Aligned_cols=116 Identities=24% Similarity=0.293 Sum_probs=97.2
Q ss_pred CCChhhhhccccCCCCCcCCCCCCCceeeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCC--eEEEE
Q 008959 389 FKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNG--TMVIF 466 (547)
Q Consensus 389 y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G--~~~~~ 466 (547)
+..|+.||.|. +.||++. ++++++|||||+|..++++ ++.|.+| .++++
T Consensus 15 ~~~~~~~ffR~---p~R~~~~--~~~~ivSPaDG~v~~i~~~------------------------~~~~~~g~~~~i~I 65 (189)
T TIGR00164 15 FTLFTLQFFRD---PDREIPQ--GPEAVLSPADGRIDVVERA------------------------RRPFPDGDGLKISI 65 (189)
T ss_pred HHHHHHHhcCC---CCCCCCC--CCCEEEeCCCcEEEEEEee------------------------ccccCCCcEEEEEE
Confidence 44588899887 7899864 6788999999999987652 2345555 67888
Q ss_pred EeCCCCceeeecCcCeEEeEEEEecCceeccChhhhhccCCCCccceeEEEEEEeecCcceEEEEeccccccccc
Q 008959 467 RLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSR 541 (547)
Q Consensus 467 ~Lsp~dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a~~~~~~~~~~~N~R~v~~~~t~~~G~v~~v~VGa~~v~~~ 541 (547)
||||.||||+|+|++|+|.+.+++||.+++++- ..++.+|||+++.++|+ .|+|++++||++.+++.
T Consensus 66 ~Lsp~DyHr~haP~~G~v~~~~~~~G~~~~~~~-------~~~~~~NeR~~~~~~t~-~G~v~~v~v~~~~~~~i 132 (189)
T TIGR00164 66 FMSPFDVHVNRAPAGGKVTYVKHIDGSFVPAFL-------RKASTENERNAVLIKTA-SGEVGVVQIAGFVARRI 132 (189)
T ss_pred EcCCcccceEEcccccEEEEEEEECCeEeeccc-------CcccccceeEEEEEEcC-CCCEEEEEECeEEccEE
Confidence 999999999999999999999999999998641 35788999999999995 89999999999876654
No 15
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=99.86 E-value=1.4e-21 Score=189.45 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=99.0
Q ss_pred hhhhhccccCCCCCcCCCCCCCceeeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCC
Q 008959 392 FNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQ 471 (547)
Q Consensus 392 fn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~ 471 (547)
|..||.|. +.||++. +++.++|||||++..++++++. ++++ +...+.+||+|.
T Consensus 37 ~~~~ffRd---p~R~~~~--~~~~i~SPaDG~v~~i~~v~d~--------------~~~~--------~~~~i~i~lsp~ 89 (206)
T PRK05305 37 FCLYFFRD---PERVIPT--DDGLVVSPADGKVVVIEEVVPP--------------YGDE--------PRLRISIFMSVF 89 (206)
T ss_pred HHHheecC---CCCCCCC--CCCEEEeCCCcEEEEEEEECCC--------------ccCC--------ceEEEEEEECcc
Confidence 77888888 6899864 6788999999999999998761 2332 234689999999
Q ss_pred CceeeecCcCeEEeEEEEecCceeccChhhhhccCCCCccceeEEEEEEeecCcceEEEEecccccccccc
Q 008959 472 DYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 542 (547)
Q Consensus 472 dYHr~h~P~~G~v~~~~~i~G~~~~v~p~a~~~~~~~~~~~N~R~v~~~~t~~~G~v~~v~VGa~~v~~~~ 542 (547)
||||+|+|++|+|.+.+|+||.+++++. +..+++|||+++.++|++.|.+++++|||+.+++.+
T Consensus 90 d~H~~~aP~~G~V~~~~~~~G~~~~~~~-------~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~ 153 (206)
T PRK05305 90 NVHVNRAPVSGTVTKVEYRPGKFLNAFL-------DKASEENERNAVVIETADGGEIGVVQIAGLIARRIV 153 (206)
T ss_pred cCCEEEeCccCEEEEEEEECCeEEecCC-------CcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE
Confidence 9999999999999999999999999863 346789999999999977889999999998877553
No 16
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-13 Score=127.82 Aligned_cols=118 Identities=31% Similarity=0.524 Sum_probs=104.2
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcc-----hHH
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQV-----AAN 192 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~-----~~e 192 (547)
++++|+.||.|++|.| ++.+++.++. .|++.+ +..+++.+|.|++|.|+++||..++...+... ..+
T Consensus 10 l~~~F~~fD~d~~G~i~~~el~~~lr~lg~-~~t~~e---l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 10 LKEAFQLFDKDGDGKISVEELGAVLRSLGQ-NPTEEE---LRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCC-CCCHHH---HHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 8999999999999999 8889999987 688888 99999999999999999999999998754432 345
Q ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHhhhccCcccccchhHHHHHhhhcccCcc
Q 008959 193 KKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTM 247 (547)
Q Consensus 193 el~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~~~~~~~~~~~~~~l~~~D~~~~l 247 (547)
+++++|+.||.|++|+||.+||..+|..+++.... ..|.++++..|.+++.
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~----~e~~~mi~~~d~d~dg 136 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTD----EECKEMIREVDVDGDG 136 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCH----HHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999998763 5689999888875554
No 17
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.46 E-value=5.9e-13 Score=122.57 Aligned_cols=122 Identities=27% Similarity=0.342 Sum_probs=105.4
Q ss_pred ccChHH-HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCcc
Q 008959 116 FEDSDA-DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQV 189 (547)
Q Consensus 116 ~e~~~e-l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~-lg~~~ 189 (547)
.+.+.+ ++++|.++|+|++|.| +..+++.++. .+++.+ +.++|..+|. ++|.|++.+|..+|.. +....
T Consensus 15 t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~-~~s~~e---i~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 15 TEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGF-NPSEAE---INKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred CHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCC-CCcHHH---HHHHHHhccC-CCCccCHHHHHHHHHHHhccCC
Confidence 333444 9999999999999999 8888888887 677777 9999999999 9999999999999987 45667
Q ss_pred hHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhccCcccccchhHHHHHhhhcccCc
Q 008959 190 AANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNT 246 (547)
Q Consensus 190 ~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~~~~~~~~~~~~~~l~~~D~~~~ 246 (547)
+.++++.+|+.||+|+||+|+..|++.+++.+++..++ ..+.++|+..|.+++
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~d----eev~~ll~~~d~d~d 142 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSD----EEVEKLLKEYDEDGD 142 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCH----HHHHHHHHhcCCCCC
Confidence 78999999999999999999999999999999998776 467788887775444
No 18
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.1e-11 Score=111.95 Aligned_cols=127 Identities=21% Similarity=0.334 Sum_probs=108.3
Q ss_pred ceecccChHH-HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-c
Q 008959 112 RISVFEDSDA-DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-F 185 (547)
Q Consensus 112 ~isl~e~~~e-l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~-l 185 (547)
...+.+.+.+ +++.|++||++++|+| +.-.++++++ .+..++ +.++...+|.++.|.|++++|...+.. +
T Consensus 24 ~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGF-E~~k~e---i~kll~d~dk~~~g~i~fe~f~~~mt~k~ 99 (172)
T KOG0028|consen 24 KSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGF-EPKKEE---ILKLLADVDKEGSGKITFEDFRRVMTVKL 99 (172)
T ss_pred CccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCC-CcchHH---HHHHHHhhhhccCceechHHHHHHHHHHH
Confidence 3445556666 9999999999999999 5566788887 555666 889999999999999999999999876 7
Q ss_pred CCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhccCcccccchhHHHHHhhhcccCc
Q 008959 186 GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNT 246 (547)
Q Consensus 186 g~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~~~~~~~~~~~~~~l~~~D~~~~ 246 (547)
++..+.+++..+|+.+|.|++|.||..+|+.++.++++...+ ..+.++|.+.|..++
T Consensus 100 ~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD----~El~eMIeEAd~d~d 156 (172)
T KOG0028|consen 100 GERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTD----EELMEMIEEADRDGD 156 (172)
T ss_pred hccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccH----HHHHHHHHHhccccc
Confidence 887899999999999999999999999999999999997765 568888888776544
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.28 E-value=1.7e-11 Score=112.88 Aligned_cols=98 Identities=22% Similarity=0.438 Sum_probs=84.7
Q ss_pred hHHHHHHHHhhCCCCCchh-HHHHhhhcCCC---CCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHH
Q 008959 119 SDADSEVFDLLDPSSSNKI-VGKISLSCSVE---DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKK 194 (547)
Q Consensus 119 ~~el~~~F~~~D~d~dG~I-l~~ll~~l~~~---~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel 194 (547)
+.++.++|..+|. +.+.| +.+++..++.. ....++ ++.+|+.||.|+||+|+..|+..+++.+|+.++++++
T Consensus 55 ~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Ee---l~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev 130 (160)
T COG5126 55 EAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEE---LREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEV 130 (160)
T ss_pred HHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHH---HHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHH
Confidence 4448999999999 88888 77766655432 223444 9999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008959 195 EELFKAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 195 ~~~F~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
+.+++.+|.|+||+|+++||.+++..
T Consensus 131 ~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 131 EKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999999999999999998743
No 20
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.24 E-value=4.4e-11 Score=110.64 Aligned_cols=102 Identities=17% Similarity=0.343 Sum_probs=84.2
Q ss_pred hHHHHHHHHhhCCCCCchh-HHH---HhhhcCCCCCChH-HHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHH
Q 008959 119 SDADSEVFDLLDPSSSNKI-VGK---ISLSCSVEDPIET-EKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANK 193 (547)
Q Consensus 119 ~~el~~~F~~~D~d~dG~I-l~~---ll~~l~~~~~~~~-e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~ee 193 (547)
+.++..+++.+|.|++|.| +.+ ++........... ..+.++++|+.||.|++|+|+.+||..+|..+|...+.++
T Consensus 43 ~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e 122 (151)
T KOG0027|consen 43 EEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEE 122 (151)
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHH
Confidence 4559999999999999999 444 4433332111111 1234999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008959 194 KEELFKAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 194 l~~~F~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
+..+++.+|.|+||.|+|+||.++|..
T Consensus 123 ~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 123 CKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 999999999999999999999998853
No 21
>PTZ00183 centrin; Provisional
Probab=99.11 E-value=1e-09 Score=101.23 Aligned_cols=115 Identities=23% Similarity=0.340 Sum_probs=88.8
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCcchHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-GNQVAANKKEE 196 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l-g~~~~~eel~~ 196 (547)
+..+|..+|.+++|.| +..++..++. .+.... +..+|+.+|.+++|.|+++||..++... ......++++.
T Consensus 19 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~---~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 94 (158)
T PTZ00183 19 IREAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEE---IKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK 94 (158)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHH---HHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHH
Confidence 8889999999999998 5555666554 344444 8899999999999999999999987653 44456678999
Q ss_pred HHHHhcCCCCCCcCHHHHHHHHHhhhccCcccccchhHHHHHhhhccc
Q 008959 197 LFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMV 244 (547)
Q Consensus 197 ~F~~~D~d~dG~Is~~Ef~~~l~~l~~~~~~~~~~~~~~~~l~~~D~~ 244 (547)
+|+.+|.|++|.|+.+||..++...+..... ..+..++...|..
T Consensus 95 ~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~----~~~~~~~~~~d~~ 138 (158)
T PTZ00183 95 AFRLFDDDKTGKISLKNLKRVAKELGETITD----EELQEMIDEADRN 138 (158)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHhCCCCCH----HHHHHHHHHhCCC
Confidence 9999999999999999999999877654332 3455566555543
No 22
>PTZ00183 centrin; Provisional
Probab=99.06 E-value=1.3e-09 Score=100.60 Aligned_cols=97 Identities=20% Similarity=0.330 Sum_probs=81.7
Q ss_pred HHHHHHhhCCCCCchh-HHHHhhhcC---CCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI-VGKISLSCS---VEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEEL 197 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~~ll~~l~---~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~ 197 (547)
+..+|..+|.+++|.| +.++...+. ....... .++.+|+.+|.+++|.|+.+||..++..++..++.+++..+
T Consensus 55 ~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~---~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~ 131 (158)
T PTZ00183 55 IKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPRE---EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEM 131 (158)
T ss_pred HHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHH---HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 7889999999999999 555433221 1122233 38999999999999999999999999999988999999999
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 198 FKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 198 F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
|..+|.|++|.|+++||..++...
T Consensus 132 ~~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 132 IDEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHhcc
Confidence 999999999999999999998653
No 23
>PTZ00184 calmodulin; Provisional
Probab=99.04 E-value=2.7e-09 Score=97.05 Aligned_cols=114 Identities=27% Similarity=0.429 Sum_probs=87.9
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCcchHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-GNQVAANKKEE 196 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l-g~~~~~eel~~ 196 (547)
+...|..+|.+++|.| +..++..++. .+...+ +..+|+.+|.+++|.|+++||..++... ......+.+..
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 88 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQ-NPTEAE---LQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKE 88 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHhCC-CCCHHH---HHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHH
Confidence 8889999999999999 5555555544 444444 8999999999999999999999998763 33455678899
Q ss_pred HHHHhcCCCCCCcCHHHHHHHHHhhhccCcccccchhHHHHHhhhcc
Q 008959 197 LFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADM 243 (547)
Q Consensus 197 ~F~~~D~d~dG~Is~~Ef~~~l~~l~~~~~~~~~~~~~~~~l~~~D~ 243 (547)
+|+.+|.|++|.|+.+||..++...+..... .....++...|.
T Consensus 89 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~----~~~~~~~~~~d~ 131 (149)
T PTZ00184 89 AFKVFDRDGNGFISAAELRHVMTNLGEKLTD----EEVDEMIREADV 131 (149)
T ss_pred HHHhhCCCCCCeEeHHHHHHHHHHHCCCCCH----HHHHHHHHhcCC
Confidence 9999999999999999999999876543322 335555555543
No 24
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.00 E-value=2.3e-09 Score=94.84 Aligned_cols=113 Identities=25% Similarity=0.289 Sum_probs=96.7
Q ss_pred HHHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCC--CCCcccHHHHHHHHHhcCC---cchH
Q 008959 121 ADSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYN--QDGQLSFKEFSDLISAFGN---QVAA 191 (547)
Q Consensus 121 el~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d--~dG~Is~~Ef~~~l~~lg~---~~~~ 191 (547)
+++++|.+||..+||+| .++++++++. +|++.+ +.+....++.+ +--.|+|++|.-++..+++ ..+-
T Consensus 12 e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~-nPT~ae---V~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 12 EFKEAFLLFDRTGDGKISGSQVGDVLRALGQ-NPTNAE---VLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHhcC-CCcHHH---HHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 39999999999999999 7889999986 899988 88888888887 5578999999999998754 3566
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhccCcccccchhHHHHHhhh
Q 008959 192 NKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVA 241 (547)
Q Consensus 192 eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~~~~~~~~~~~~~~l~~~ 241 (547)
++.-+-++.||++++|+|...||+++|..+|+...+ ..+.+.+...
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~e----eEVe~Llag~ 133 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTE----EEVEELLAGQ 133 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccH----HHHHHHHccc
Confidence 788889999999999999999999999999998776 3455555433
No 25
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=2.5e-09 Score=96.91 Aligned_cols=95 Identities=18% Similarity=0.367 Sum_probs=83.0
Q ss_pred HHHHHHhhCCCCCchh-HHHHh----hhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI-VGKIS----LSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEE 196 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~~ll----~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~ 196 (547)
+.++...+|.++.|.| +.++. ..++. ..+.++ ++.+|+.+|.|++|.|++.+|..++..||++++++++++
T Consensus 71 i~kll~d~dk~~~g~i~fe~f~~~mt~k~~e-~dt~eE---i~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~e 146 (172)
T KOG0028|consen 71 ILKLLADVDKEGSGKITFEDFRRVMTVKLGE-RDTKEE---IKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELME 146 (172)
T ss_pred HHHHHHhhhhccCceechHHHHHHHHHHHhc-cCcHHH---HHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHH
Confidence 7888999999999999 44433 33333 335666 999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCcCHHHHHHHHHh
Q 008959 197 LFKAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 197 ~F~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
|++.+|.|+||.|+-+||.++|+.
T Consensus 147 MIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 147 MIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHhcccccccccHHHHHHHHhc
Confidence 999999999999999999999865
No 26
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.97 E-value=1.9e-09 Score=85.04 Aligned_cols=61 Identities=23% Similarity=0.490 Sum_probs=54.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchH----HHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008959 158 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAA----NKKEELFKAADKNGDGVVSVDELAALL 218 (547)
Q Consensus 158 l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~----eel~~~F~~~D~d~dG~Is~~Ef~~~l 218 (547)
++++|+.+|.|++|+|+.+||..++..++...+. +.+..+|+.+|.|+||.|+++||.+++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 7899999999999999999999999998865544 456666999999999999999999875
No 27
>PTZ00184 calmodulin; Provisional
Probab=98.96 E-value=3.8e-09 Score=96.08 Aligned_cols=99 Identities=14% Similarity=0.323 Sum_probs=80.5
Q ss_pred HHHHHHHhhCCCCCchh-HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHH
Q 008959 121 ADSEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFK 199 (547)
Q Consensus 121 el~~~F~~~D~d~dG~I-l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~ 199 (547)
.+..+|..+|.+++|.+ +.+++..+............++.+|+.+|.+++|.|+.+||..++..++..++.+++..+|.
T Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 127 (149)
T PTZ00184 48 ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 127 (149)
T ss_pred HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 38899999999999999 55554433211010111233899999999999999999999999999888889999999999
Q ss_pred HhcCCCCCCcCHHHHHHHHH
Q 008959 200 AADKNGDGVVSVDELAALLA 219 (547)
Q Consensus 200 ~~D~d~dG~Is~~Ef~~~l~ 219 (547)
.+|.+++|.|+++||..++.
T Consensus 128 ~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 128 EADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred hcCCCCCCcCcHHHHHHHHh
Confidence 99999999999999998874
No 28
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.91 E-value=1.3e-08 Score=91.56 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=75.6
Q ss_pred hHH-HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCcchHH
Q 008959 119 SDA-DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVAAN 192 (547)
Q Consensus 119 ~~e-l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~-lg~~~~~e 192 (547)
|.+ +++.|+.+|.|+||.| +...+.+++. .+++++ +..+++ ...|-|+|.-|+.++-. |....+++
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk-~~~d~e---lDaM~~----Ea~gPINft~FLTmfGekL~gtdpe~ 101 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGK-IASDEE---LDAMMK----EAPGPINFTVFLTMFGEKLNGTDPEE 101 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCC-CCCHHH---HHHHHH----hCCCCeeHHHHHHHHHHHhcCCCHHH
Confidence 455 8999999999999999 8888888886 466666 666664 35677777777777755 55556667
Q ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHhhhccCcc
Q 008959 193 KKEELFKAADKNGDGVVSVDELAALLALQQEKEPL 227 (547)
Q Consensus 193 el~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~~~~ 227 (547)
.+..+|+.||.+++|.|.-+.|+++|...+++...
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~ 136 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTD 136 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCH
Confidence 77777777777777777777777777777766554
No 29
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.89 E-value=6.2e-09 Score=87.38 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhcC-CCCCcccHHHHHHHHHh-cCCcchH-HHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 155 KSFARRILSIVDY-NQDGQLSFKEFSDLISA-FGNQVAA-NKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 155 ~~~l~~~f~~~D~-d~dG~Is~~Ef~~~l~~-lg~~~~~-eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
...+..+|+.||. +++|+|+.+||..++.. +|..++. ++++++++.+|.|+||.|+|+||..++..+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3458999999999 99999999999999999 9988887 899999999999999999999999999775
No 30
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.88 E-value=8.7e-09 Score=98.10 Aligned_cols=101 Identities=21% Similarity=0.385 Sum_probs=80.7
Q ss_pred HHHHHHhhCCCCCch-h-HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCcch--HHH---
Q 008959 122 DSEVFDLLDPSSSNK-I-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVA--ANK--- 193 (547)
Q Consensus 122 l~~~F~~~D~d~dG~-I-l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~-lg~~~~--~ee--- 193 (547)
..++++.+|++++|. | +++++..+....+.......++-+|++||.+++|+|+.+|+..++.. ++...+ ++.
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 577889999988888 8 88777766654454444445899999999999999999999999988 454444 433
Q ss_pred -HHHHHHHhcCCCCCCcCHHHHHHHHHhhh
Q 008959 194 -KEELFKAADKNGDGVVSVDELAALLALQQ 222 (547)
Q Consensus 194 -l~~~F~~~D~d~dG~Is~~Ef~~~l~~l~ 222 (547)
++..|..+|.|+||+|+++||..++.+.+
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 56678999999999999999999997653
No 31
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.79 E-value=1.4e-08 Score=96.88 Aligned_cols=98 Identities=19% Similarity=0.326 Sum_probs=74.6
Q ss_pred HHHHHHhhCCCCCchh-HHHHhhhcCCCC-CChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc----CC-------c
Q 008959 122 DSEVFDLLDPSSSNKI-VGKISLSCSVED-PIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF----GN-------Q 188 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~~ll~~l~~~~-~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l----g~-------~ 188 (547)
...+|..+|.|+||.| +.+++.++..-. -+.++ .++-+|+++|.|++|+|+.+|+..++..+ +. .
T Consensus 66 ~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~ee--kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~ 143 (193)
T KOG0044|consen 66 AELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEE--KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEE 143 (193)
T ss_pred HHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHH--HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccc
Confidence 6789999999999999 666555443211 12222 26777999999999999999999988763 31 1
Q ss_pred chHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 189 VAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 189 ~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
.+++.+..+|+.+|.|+||.||++||.......
T Consensus 144 ~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 144 TPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred cHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 244568889999999999999999999887553
No 32
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.74 E-value=5.3e-08 Score=81.70 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=60.8
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-----cCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 156 SFARRILSIVD-YNQDG-QLSFKEFSDLISA-----FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 156 ~~l~~~f~~~D-~d~dG-~Is~~Ef~~~l~~-----lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
..++++|+.|| .|++| .|+.+||..+|.. +|...++++++++++.+|.|+||.|+|+||..++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34899999998 79999 5999999999999 8888899999999999999999999999999998664
No 33
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.71 E-value=8.1e-08 Score=91.64 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=90.8
Q ss_pred HHHHHHhhCCCC-Cchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHH
Q 008959 122 DSEVFDLLDPSS-SNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEE 196 (547)
Q Consensus 122 l~~~F~~~D~d~-dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~ 196 (547)
++..+.-|=.+- .|.+ +..+...... ......+.+.+|+.+|.|+||.|++.||..++..+-....++.++.
T Consensus 28 i~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp---~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w 104 (193)
T KOG0044|consen 28 IQQWYRGFKNECPSGRLTLEEFREIYASFFP---DGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKW 104 (193)
T ss_pred HHHHHHHhcccCCCCccCHHHHHHHHHHHCC---CCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhh
Confidence 555555554332 5555 6666665542 2333445889999999999999999999999988766678889999
Q ss_pred HHHHhcCCCCCCcCHHHHHHHHHhhhccCc-------ccccchhHHHHHhhhcccCccc
Q 008959 197 LFKAADKNGDGVVSVDELAALLALQQEKEP-------LMNCCPVCGETLEVADMVNTMI 248 (547)
Q Consensus 197 ~F~~~D~d~dG~Is~~Ef~~~l~~l~~~~~-------~~~~~~~~~~~l~~~D~~~~l~ 248 (547)
+|+.+|.|+||+|+++|+..++...-.... +......+.+++++.|.+++..
T Consensus 105 ~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~ 163 (193)
T KOG0044|consen 105 AFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGK 163 (193)
T ss_pred hheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999988633221 2222234677788888776644
No 34
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.67 E-value=1.6e-07 Score=89.70 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=71.9
Q ss_pred HHHHHHhhCCCCCchh-HHHHhhhc---CCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI-VGKISLSC---SVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEEL 197 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~~ll~~l---~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~ 197 (547)
+...|+..|.|..|.| -.++..++ .....+.+ .++.+..+||.+.+|+|.++||..++..+. +++.+
T Consensus 59 ~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~---TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~------~Wr~v 129 (221)
T KOG0037|consen 59 LAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIE---TCRLMISMFDRDNSGTIGFKEFKALWKYIN------QWRNV 129 (221)
T ss_pred HHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHH---HHHHHHHHhcCCCCCccCHHHHHHHHHHHH------HHHHH
Confidence 7778888888888888 33333333 22223333 378888888888888888888888887644 78888
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhhhccCcc
Q 008959 198 FKAADKNGDGVVSVDELAALLALQQEKEPL 227 (547)
Q Consensus 198 F~~~D~d~dG~Is~~Ef~~~l~~l~~~~~~ 227 (547)
|+.+|+|++|.|+..||.+.+..+|...+.
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~Gy~Lsp 159 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQLGYRLSP 159 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHcCcCCCH
Confidence 888888888888888888888888877654
No 35
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.66 E-value=1.3e-07 Score=80.24 Aligned_cols=66 Identities=23% Similarity=0.281 Sum_probs=57.2
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-c----CCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 156 SFARRILSIVD-YNQDG-QLSFKEFSDLISA-F----GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 156 ~~l~~~f~~~D-~d~dG-~Is~~Ef~~~l~~-l----g~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
..+.++|+.|| .|++| +|+.+||..++.. + ....+..+++++++.+|.|+||.|+++||..++..+
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45788899999 78998 5999999999976 3 334467799999999999999999999999999775
No 36
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.65 E-value=1.4e-07 Score=80.42 Aligned_cols=70 Identities=23% Similarity=0.313 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 150 PIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 150 ~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
.+.++...++.+|+.+|.|++|.|+.+|+..++...+ .+.++++++|..+|.+++|.|+++||..++...
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 3456667799999999999999999999999998876 688899999999999999999999999988664
No 37
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.63 E-value=1.9e-07 Score=89.15 Aligned_cols=91 Identities=15% Similarity=0.259 Sum_probs=81.0
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEEL 197 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~ 197 (547)
.+.+..+||.+.+|+| |..+...+. .|+.+|+.+|.|++|.|+..||.++|..+|-.++++-..-+
T Consensus 96 crlmI~mfd~~~~G~i~f~EF~~Lw~~i~----------~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~l 165 (221)
T KOG0037|consen 96 CRLMISMFDRDNSGTIGFKEFKALWKYIN----------QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLL 165 (221)
T ss_pred HHHHHHHhcCCCCCccCHHHHHHHHHHHH----------HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHH
Confidence 6788899999999999 444544432 29999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhhh
Q 008959 198 FKAADKNGDGVVSVDELAALLALQQ 222 (547)
Q Consensus 198 F~~~D~d~dG~Is~~Ef~~~l~~l~ 222 (547)
++++|..++|.|.+++|.+++..+.
T Consensus 166 v~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 166 VRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHhccccCCceeHHHHHHHHHHHH
Confidence 9999998899999999999986653
No 38
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.61 E-value=1.8e-07 Score=79.44 Aligned_cols=65 Identities=25% Similarity=0.267 Sum_probs=58.4
Q ss_pred HHHHHHHhhcC-CC-CCcccHHHHHHHHHh-----cCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 157 FARRILSIVDY-NQ-DGQLSFKEFSDLISA-----FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 157 ~l~~~f~~~D~-d~-dG~Is~~Ef~~~l~~-----lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
.+..+|..+|. |+ +|.|+.+||..++.. +|...++++++.+|+.+|.|++|.|+++||.+++...
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 48899999997 97 699999999999986 4567788999999999999999999999999998664
No 39
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.59 E-value=2.2e-07 Score=77.94 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhcC-CC-CCcccHHHHHHHHH---hcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhh
Q 008959 155 KSFARRILSIVDY-NQ-DGQLSFKEFSDLIS---AFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQ 222 (547)
Q Consensus 155 ~~~l~~~f~~~D~-d~-dG~Is~~Ef~~~l~---~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~ 222 (547)
...+-.+|..||. |+ +|+|+.+||..++. .+|...+++++.++|+.+|.|++|.|+|+||..++..+.
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 3457789999998 77 89999999999996 368889999999999999999999999999999997753
No 40
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.59 E-value=2.6e-07 Score=78.13 Aligned_cols=66 Identities=29% Similarity=0.426 Sum_probs=58.3
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-cCC----cchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 156 SFARRILSIVD-YNQDG-QLSFKEFSDLISA-FGN----QVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 156 ~~l~~~f~~~D-~d~dG-~Is~~Ef~~~l~~-lg~----~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
+.++++|+.|| .+++| .|+..||..++.. +|. ..++++++++|+.+|.|++|.|+++||..++..+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 44899999997 99999 5999999999975 543 4578899999999999999999999999999765
No 41
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.56 E-value=1.6e-07 Score=70.95 Aligned_cols=52 Identities=29% Similarity=0.630 Sum_probs=48.7
Q ss_pred CCCcccHHHHHHHHHhcCCc-chHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008959 169 QDGQLSFKEFSDLISAFGNQ-VAANKKEELFKAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 169 ~dG~Is~~Ef~~~l~~lg~~-~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
.+|.|+.+||..++..+|.. ++++++..+|..+|.|++|+|+++||.+++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999878988 99999999999999999999999999999864
No 42
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.56 E-value=2.9e-07 Score=77.01 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhcC--CCCCcccHHHHHHHHHh-cCCcc----hHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 153 TEKSFARRILSIVDY--NQDGQLSFKEFSDLISA-FGNQV----AANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 153 ~e~~~l~~~f~~~D~--d~dG~Is~~Ef~~~l~~-lg~~~----~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
++.+.++.+|..+|. |++|.|+.+||..++.. +|... +.++++.++..+|.+++|.|+++||..++...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 344558999999999 89999999999999976 55443 48899999999999999999999999998764
No 43
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.56 E-value=6.6e-07 Score=92.37 Aligned_cols=93 Identities=22% Similarity=0.393 Sum_probs=53.6
Q ss_pred HHHHHHhhCCCCCchh-HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKA 200 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~ 200 (547)
...+|...|.|.||.+ +.++...+.. .+.+ +.++|+..|.++||.|+.+|+...+..+|.+++++++..+|+.
T Consensus 53 ~~~l~~~~d~~~dg~vDy~eF~~Y~~~---~E~~---l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~ 126 (463)
T KOG0036|consen 53 AKMLFSAMDANRDGRVDYSEFKRYLDN---KELE---LYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEH 126 (463)
T ss_pred HHHHHHhcccCcCCcccHHHHHHHHHH---hHHH---HHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHH
Confidence 4455555555555555 4444443321 1222 5556666666666666666666666666666666666666666
Q ss_pred hcCCCCCCcCHHHHHHHHHh
Q 008959 201 ADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 201 ~D~d~dG~Is~~Ef~~~l~~ 220 (547)
+|+|+++.|+++|+++.+.-
T Consensus 127 ~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 127 MDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred hccCCCeeeccHHHHhhhhc
Confidence 66666666666666665543
No 44
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.55 E-value=2.9e-07 Score=72.27 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=55.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 159 RRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 159 ~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
+.+|+.+|.|++|.|+.+|+..++..+| .+.++++++|+.+|.+++|.|+++||..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5689999999999999999999999887 478899999999999999999999999988653
No 45
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.50 E-value=1e-07 Score=87.89 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=46.4
Q ss_pred ccceeEEEEEEeecc------cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHH
Q 008959 50 EDFAGIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kl 101 (547)
..++|+|+|+|+.|. +..++|||+++..|+|.-||+++++++||+||+.+.+
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf 59 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTF 59 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEE
Confidence 357899999999993 5699999999999999999999999999999994433
No 46
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=98.50 E-value=1e-07 Score=84.88 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=45.0
Q ss_pred eeEEEEEEeeccc-----ccCCceEEEEEcccceEeeeecCC-CCCCCchhhHHHHH
Q 008959 53 AGIALLTLISAEM-----KFKDKWLACVSLGEQTCRTAISDN-TDKPIWNSEKKLLL 103 (547)
Q Consensus 53 ~gi~~i~~~~A~~-----~~~dd~~~~v~~g~~~frT~vi~~-tLnP~Wne~~kll~ 103 (547)
.|.|+|+|++|+. .+++||||++++|++.+||+++.+ ++||+|||.+.+.+
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v 57 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTL 57 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEe
Confidence 4899999999962 378999999999999999999876 79999999777765
No 47
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.49 E-value=4.7e-07 Score=68.65 Aligned_cols=61 Identities=25% Similarity=0.561 Sum_probs=57.5
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008959 158 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 218 (547)
Q Consensus 158 l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l 218 (547)
+..+|..+|.+++|.|+++||..++..++...+.+.+..+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5778999999999999999999999999988999999999999999999999999998865
No 48
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.43 E-value=1.1e-06 Score=73.78 Aligned_cols=67 Identities=22% Similarity=0.251 Sum_probs=57.8
Q ss_pred HHHHHHHHHh-hcCCCCC-cccHHHHHHHHHhc-----CCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 155 KSFARRILSI-VDYNQDG-QLSFKEFSDLISAF-----GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 155 ~~~l~~~f~~-~D~d~dG-~Is~~Ef~~~l~~l-----g~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
...|..+|+. +|.+++| .|+.+||..++... +....+.++.++++.+|.|+||.|+|+||.+++..+
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3458889998 7888986 99999999999874 345567899999999999999999999999999765
No 49
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.38 E-value=7.8e-07 Score=69.96 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=48.5
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLI 182 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l 182 (547)
++++|+.+|.|++|.| +..++..+....+...-...++.+|+.+|.|+||.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5789999999999999 666666665422233334568888999999999999999999875
No 50
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.35 E-value=1.4e-06 Score=90.05 Aligned_cols=149 Identities=19% Similarity=0.205 Sum_probs=107.9
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEEL 197 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~ 197 (547)
++.+|+.+|.+++|.+ +.+.+.++....+...- ...+|+..|.|.||.++++||...+.. .+.++..+
T Consensus 16 ~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~---~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~ 87 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEA---AKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRI 87 (463)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHH---HHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHH
Confidence 8999999999999999 44455666653333333 788999999999999999999999964 66789999
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhhhccCcccccchhHHHHHhhhcccCccc-ccccccc------cC----C--------
Q 008959 198 FKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMI-HLTLCFD------EG----T-------- 258 (547)
Q Consensus 198 F~~~D~d~dG~Is~~Ef~~~l~~l~~~~~~~~~~~~~~~~l~~~D~~~~l~-~~a~c~~------~~----~-------- 258 (547)
|+..|.+.||.|+.+|+.+.+.+++.+..++ ...++++.+|..+..+ ++..+.+ +. +
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de----~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~~W~h~~ 163 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLGIQLSDE----KAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYDFWRHVL 163 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhCCccCHH----HHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHHHHhhhhhe
Confidence 9999999999999999999999998876653 3344555555443332 2111110 00 0
Q ss_pred -----CccccccCcccccchhhHHHhhhc
Q 008959 259 -----GNQVMTGGFLTDKQASNVWMFKLS 282 (547)
Q Consensus 259 -----~~~i~~~gf~~~~~a~~~w~~k~l 282 (547)
.+.....|+......+-.|..-++
T Consensus 164 ~idigE~~~iPdg~s~~e~~~g~ww~~li 192 (463)
T KOG0036|consen 164 LIDIGEDAVLPDGDSKLENDSGRWWGFLI 192 (463)
T ss_pred EEEccccccCCcchHHHHhcccchhhhhc
Confidence 123344777777777888877766
No 51
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.35 E-value=2.8e-06 Score=81.08 Aligned_cols=121 Identities=24% Similarity=0.303 Sum_probs=89.6
Q ss_pred HHHHHHhhCCC-CCchh-HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCc-ccHHHHHHHHHhcCCcc-hHHHHHHH
Q 008959 122 DSEVFDLLDPS-SSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQ-LSFKEFSDLISAFGNQV-AANKKEEL 197 (547)
Q Consensus 122 l~~~F~~~D~d-~dG~I-l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~-Is~~Ef~~~l~~lg~~~-~~eel~~~ 197 (547)
+...|..+|.+ ++|.+ ..++.... ......+..+++..+|.+++|. |+++||..++...-... ..++++-+
T Consensus 35 L~~rF~kl~~~~~~g~lt~eef~~i~-----~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~fa 109 (187)
T KOG0034|consen 35 LYERFKKLDRNNGDGYLTKEEFLSIP-----ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFA 109 (187)
T ss_pred HHHHHHHhccccccCccCHHHHHHHH-----HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHH
Confidence 88999999999 89988 44443322 1122233678899999999998 99999999999865544 44599999
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhhhcc-Cc--ccccchhHHHHHhhhcccCcc
Q 008959 198 FKAADKNGDGVVSVDELAALLALQQEK-EP--LMNCCPVCGETLEVADMVNTM 247 (547)
Q Consensus 198 F~~~D~d~dG~Is~~Ef~~~l~~l~~~-~~--~~~~~~~~~~~l~~~D~~~~l 247 (547)
|+.||.+++|+|+.+|+.+++..+-.. .. +......+.+.+.+.|.+++.
T Consensus 110 F~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG 162 (187)
T KOG0034|consen 110 FRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDG 162 (187)
T ss_pred HHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999887542 22 111113466677788876654
No 52
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=98.33 E-value=5.5e-07 Score=78.51 Aligned_cols=48 Identities=21% Similarity=0.410 Sum_probs=42.1
Q ss_pred eEEEEEEeecc-c---------ccCCceEEEEEcccceEeeeecCCCCCCCchhhHHH
Q 008959 54 GIALLTLISAE-M---------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 54 gi~~i~~~~A~-~---------~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kl 101 (547)
|||.|+|++|+ + +++.|||+++.+|.+.+||+++++++||+|||.+..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f 58 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAF 58 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEE
Confidence 89999999995 1 135799999999999999999999999999996544
No 53
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.31 E-value=2.4e-06 Score=75.30 Aligned_cols=60 Identities=25% Similarity=0.377 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008959 155 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 218 (547)
Q Consensus 155 ~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l 218 (547)
...+..+|..+|.|+||.|+.+|+..+. ++ ..+..+..+|+.+|.|+||.||++||...+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~--~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LD--PNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc--chHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3448999999999999999999999876 22 456678899999999999999999999998
No 54
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.30 E-value=4.3e-06 Score=75.61 Aligned_cols=66 Identities=14% Similarity=0.377 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 152 ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 152 ~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
..+..+++++|.++|.|+||.|+.+++..++.++|...+++++..|++.. .|-|+|--|..++.+-
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGek 93 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEK 93 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHH
Confidence 44556699999999999999999999999999999999999999999864 5789999998888653
No 55
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=98.29 E-value=6.7e-07 Score=81.30 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=45.4
Q ss_pred eeEEEEEEeecc------cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHH
Q 008959 53 AGIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 53 ~gi~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+|.|+|+|++|+ ..+..|||+++.+|.+.+||+++++++||.||+.+...+
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v 70 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFV 70 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEe
Confidence 599999999995 367899999999999999999999999999999655544
No 56
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=98.28 E-value=1e-06 Score=79.15 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=52.0
Q ss_pred ccccccccccceeEEEEEEeecc-----cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHH
Q 008959 42 HHNRVLNEEDFAGIALLTLISAE-----MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 42 ~~~~~~~~~~~~gi~~i~~~~A~-----~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kl 101 (547)
..+.-.+++.-+|.|+|+|++|+ ..+..|||+.+.++++..||+++++++||+|||.+.+
T Consensus 16 ~~~~~~~~~~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f 80 (127)
T cd04032 16 VNSNCCPTRRGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDF 80 (127)
T ss_pred cCCCcCcCcCCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEE
Confidence 44566778999999999999996 2457899999999999999999999999999996654
No 57
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.13 E-value=1.6e-06 Score=77.80 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=43.4
Q ss_pred EEEEEEeecc----c-----ccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHH
Q 008959 55 IALLTLISAE----M-----KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 55 i~~i~~~~A~----~-----~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+|.|+|++|+ + .+++||||++.+|.+.+||+++++++||+|||.+.+.+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v 58 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPV 58 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEe
Confidence 5788889886 3 57889999999999999999999999999999777765
No 58
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.08 E-value=1.4e-05 Score=66.96 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCC--CCCcccHHHHHHHHH-hcCCcch----HHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 156 SFARRILSIVDYN--QDGQLSFKEFSDLIS-AFGNQVA----ANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 156 ~~l~~~f~~~D~d--~dG~Is~~Ef~~~l~-~lg~~~~----~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
..+...|..++.. .+|.|+.+||..++. .++..++ ++++..+|+.+|.|++|.|+++||..++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3477889999866 479999999999997 4666566 8899999999999999999999999999764
No 59
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.07 E-value=3.8e-06 Score=55.24 Aligned_cols=27 Identities=30% Similarity=0.617 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008959 194 KEELFKAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 194 l~~~F~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
++++|+.+|+|+||+|+++||.++|++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455555555555555555555555543
No 60
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.07 E-value=7.4e-06 Score=68.82 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=50.0
Q ss_pred HHHHHHhhCC-CCCchh----HHHHhhh-cCCCCCCh-HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008959 122 DSEVFDLLDP-SSSNKI----VGKISLS-CSVEDPIE-TEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 185 (547)
Q Consensus 122 l~~~F~~~D~-d~dG~I----l~~ll~~-l~~~~~~~-~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l 185 (547)
+..+|..||. +++|.| ++.++.. ++. ..+. .+ ++.+++.+|.|+||.|+|+||..++..+
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~-~ls~~~~---v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPH-LLKDVEG---LEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhh-hccCHHH---HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 8899999999 999999 6677766 543 2333 44 9999999999999999999999998764
No 61
>PF14658 EF-hand_9: EF-hand domain
Probab=98.05 E-value=1.2e-05 Score=63.03 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=55.4
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCC-cchHHHHHHHHHHhcCCCC-CCcCHHHHHHHHHh
Q 008959 160 RILSIVDYNQDGQLSFKEFSDLISAFGN-QVAANKKEELFKAADKNGD-GVVSVDELAALLAL 220 (547)
Q Consensus 160 ~~f~~~D~d~dG~Is~~Ef~~~l~~lg~-~~~~eel~~~F~~~D~d~d-G~Is~~Ef~~~l~~ 220 (547)
.+|.+||.++.|.|...++..+|++++. ..++.+++.+.+.+|+++. |.|+++.|..+|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999887 7788899999999999997 99999999999875
No 62
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=98.01 E-value=4.6e-06 Score=73.51 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=43.8
Q ss_pred eEEEEEEeecc-c-----------ccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHH
Q 008959 54 GIALLTLISAE-M-----------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 54 gi~~i~~~~A~-~-----------~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|+|+|+|++|+ + .+..|||+++.++++.+||++++++++|+||+.+...+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v 62 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEe
Confidence 89999999995 1 24789999999999999999999999999999766554
No 63
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=97.99 E-value=5.6e-06 Score=76.10 Aligned_cols=51 Identities=20% Similarity=0.402 Sum_probs=44.4
Q ss_pred eeEEEEEEeecc-c----ccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHH
Q 008959 53 AGIALLTLISAE-M----KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 53 ~gi~~i~~~~A~-~----~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+|.|+|+|++|+ + ...+|||+++++|++..||+++++++||+|||.+.+.+
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i 56 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSV 56 (145)
T ss_pred CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEe
Confidence 499999999994 1 36889999999999999999999999999999555544
No 64
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.99 E-value=4.7e-06 Score=72.00 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=44.1
Q ss_pred EEEEEEeecc------cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHHh
Q 008959 55 IALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLE 104 (547)
Q Consensus 55 i~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~e 104 (547)
.|.|+|++|+ ..+..||||++.+|++..||+++++++||+|||.+...+.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~ 56 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVR 56 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeC
Confidence 3789999994 4678999999999999999999999999999997766663
No 65
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.98 E-value=1.7e-05 Score=66.50 Aligned_cols=59 Identities=15% Similarity=0.298 Sum_probs=50.4
Q ss_pred HHHHHHhhC-CCCCc-hh----HHHHhhh-----cCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 008959 122 DSEVFDLLD-PSSSN-KI----VGKISLS-----CSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 184 (547)
Q Consensus 122 l~~~F~~~D-~d~dG-~I----l~~ll~~-----l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~ 184 (547)
+.++|+.|| .|++| .| ++.++.. ++. .+++++ +.++++.+|.|++|.|+|+||..++..
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~-~~~~~~---v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE-IKEQEV---VDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC-CCCHHH---HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 889999998 79999 58 7777776 554 566666 899999999999999999999998865
No 66
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=97.98 E-value=5.8e-06 Score=73.68 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=44.3
Q ss_pred eEEEEEEeecc------c--ccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHH
Q 008959 54 GIALLTLISAE------M--KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 54 gi~~i~~~~A~------~--~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|+|+|+|++|+ . .+..|||+++.+|.+.+||++++++++|+||+.+...+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~ 58 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPI 58 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEe
Confidence 89999999995 3 46789999999999999999999999999999666544
No 67
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.98 E-value=1.9e-05 Score=70.74 Aligned_cols=98 Identities=14% Similarity=0.331 Sum_probs=72.1
Q ss_pred HHHHHHhhCCCCCchh-HHHHh---hhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC-CcchHHH---
Q 008959 122 DSEVFDLLDPSSSNKI-VGKIS---LSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG-NQVAANK--- 193 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~~ll---~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg-~~~~~ee--- 193 (547)
-+++.+.|-.||.|.+ +..++ .-+....|-+.. +..+|+.+|-|+|+.|.-.++...+..+. ..+++++
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK---~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~ 149 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLK---AKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVEL 149 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhh---hhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHH
Confidence 3456677888999988 44333 222211232333 77899999999999999999999998864 3466665
Q ss_pred -HHHHHHHhcCCCCCCcCHHHHHHHHHhhh
Q 008959 194 -KEELFKAADKNGDGVVSVDELAALLALQQ 222 (547)
Q Consensus 194 -l~~~F~~~D~d~dG~Is~~Ef~~~l~~l~ 222 (547)
++.+++.+|.|+||+|++.||..++...+
T Consensus 150 i~ekvieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 150 ICEKVIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 46678889999999999999999886644
No 68
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=97.97 E-value=5.7e-06 Score=73.91 Aligned_cols=48 Identities=21% Similarity=0.426 Sum_probs=41.9
Q ss_pred EEEEEeecc------cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|+|+|++|+ ..+.+||||.+.+|.+.+||+++++++||+|||.+...+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v 54 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFEL 54 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEe
Confidence 589999995 366889999999999999999999999999999655444
No 69
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=97.97 E-value=6e-06 Score=72.11 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=41.3
Q ss_pred eEEEEEEeecc------cc-cCCceEEEEEc---ccceEeeeecCCCCCCCchhhHHHH
Q 008959 54 GIALLTLISAE------MK-FKDKWLACVSL---GEQTCRTAISDNTDKPIWNSEKKLL 102 (547)
Q Consensus 54 gi~~i~~~~A~------~~-~~dd~~~~v~~---g~~~frT~vi~~tLnP~Wne~~kll 102 (547)
|+|+|+|++|+ .. ++.|||+++.+ |...+||+++++++||+||+.+...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~ 59 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVL 59 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEE
Confidence 89999999995 23 68899999987 4568999999999999999966543
No 70
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.96 E-value=2.8e-05 Score=82.50 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=95.3
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCc---chHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhccC
Q 008959 149 DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQ---VAANKKEELFKAADKNGDGVVSVDELAALLALQQEKE 225 (547)
Q Consensus 149 ~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~---~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~~ 225 (547)
..+.+|...+++.|...| |++|+|+..|+..++...+.. ...+++++++...+.|.+|.|+++||..++..+....
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~~ 90 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSKD 90 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhhh
Confidence 456777778999999999 999999999999999886543 4578999999999999999999999999886654432
Q ss_pred cccccchhHHHHHhhhcccCcccccccccccCCCccccccCcccccchhhHHHhhhcc-cccccc
Q 008959 226 PLMNCCPVCGETLEVADMVNTMIHLTLCFDEGTGNQVMTGGFLTDKQASNVWMFKLSE-WGHFSS 289 (547)
Q Consensus 226 ~~~~~~~~~~~~l~~~D~~~~l~~~a~c~~~~~~~~i~~~gf~~~~~a~~~w~~k~l~-~~~~~~ 289 (547)
.. + +. ........+...+++++.|.+ ..+++.+|.+|+|+.|+ ..-...
T Consensus 91 ~~--------k-~~--~g~~~~~~~~~~sst~~~Hti----~eeEk~~fv~hIN~~L~~Dpdl~~ 140 (627)
T KOG0046|consen 91 IA--------K-IG--EGIKAASGTLKGSSTGTQHTI----NEEEKRAFVNHINSYLEGDPDLKH 140 (627)
T ss_pred hh--------h-hc--CCcccccceeecccccceeee----cHHHHHHHHHHHHHHhcCCcchhh
Confidence 11 0 11 111122344555677889999 89999999999999996 433333
No 71
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=97.95 E-value=5.7e-06 Score=72.82 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=42.9
Q ss_pred eEEEEEEeecc------cccCCceEEEEEcccceEeeeecC-CCCCCCchhhHHHHH
Q 008959 54 GIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISD-NTDKPIWNSEKKLLL 103 (547)
Q Consensus 54 gi~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~-~tLnP~Wne~~kll~ 103 (547)
|.|+|+|++|+ ..+++|||+++.++.+..||+++. +++||+|||.+...+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v 57 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEI 57 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEe
Confidence 78999999995 366889999999999999999885 579999999665544
No 72
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.95 E-value=2.7e-05 Score=73.34 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008959 153 TEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQE 223 (547)
Q Consensus 153 ~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~ 223 (547)
.+.+.+..+|+.+|.+.||+|++.|+..+|..+|.+.+.--++.|++..|.|.||+||+-||.=+++....
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 34455788999999999999999999999999999888888999999999999999999999998877543
No 73
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=97.88 E-value=1.4e-05 Score=71.51 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=43.3
Q ss_pred eeEEEEEEeecc------cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHH
Q 008959 53 AGIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 53 ~gi~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kl 101 (547)
.+||+|+|++|+ ..+..|||+++..+.+.+||++++++++|+||+.+..
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f 56 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIF 56 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEE
Confidence 368999999995 3468999999999999999999999999999996544
No 74
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=4.2e-05 Score=77.23 Aligned_cols=98 Identities=24% Similarity=0.348 Sum_probs=71.7
Q ss_pred HHHHHhhCCCCCchh-HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCcc-h---HHHHHH
Q 008959 123 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQV-A---ANKKEE 196 (547)
Q Consensus 123 ~~~F~~~D~d~dG~I-l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~-lg~~~-~---~eel~~ 196 (547)
++.|+..|.|+||.+ +.++...+..+.......-.++..+.-.|+|+||+|+++||..=|.. -+... + ..+-.+
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~ 245 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQ 245 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHH
Confidence 678999999999998 66666655433222222334677888899999999999999886655 33111 1 124557
Q ss_pred HHHHhcCCCCCCcCHHHHHHHHHh
Q 008959 197 LFKAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 197 ~F~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
++...|+|+||+++-+|+.+.+.-
T Consensus 246 F~~~~DknkDG~L~~dEl~~WI~P 269 (325)
T KOG4223|consen 246 FFEFRDKNKDGKLDGDELLDWILP 269 (325)
T ss_pred HHHHhhcCCCCccCHHHHhcccCC
Confidence 888899999999999999987743
No 75
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.87 E-value=1.7e-05 Score=52.14 Aligned_cols=28 Identities=21% Similarity=0.581 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008959 158 ARRILSIVDYNQDGQLSFKEFSDLISAF 185 (547)
Q Consensus 158 l~~~f~~~D~d~dG~Is~~Ef~~~l~~l 185 (547)
++.+|+.+|.|+||+|+++||..++..+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 7899999999999999999999999764
No 76
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.85 E-value=3.2e-05 Score=65.51 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=47.0
Q ss_pred HHHHHHhhC-CCCCc-hh----HHHHhhhcC----CCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008959 122 DSEVFDLLD-PSSSN-KI----VGKISLSCS----VEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 185 (547)
Q Consensus 122 l~~~F~~~D-~d~dG-~I----l~~ll~~l~----~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l 185 (547)
+.++|+.|| .|++| +| +..++.... ....+..+ +.++++.+|.|++|.|+++||..++..+
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~---v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPML---VDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHH---HHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 778899999 78998 47 666654421 11233444 9999999999999999999999999764
No 77
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=3.6e-05 Score=77.70 Aligned_cols=95 Identities=22% Similarity=0.259 Sum_probs=73.9
Q ss_pred HHHHHHhhCCCCCchh-HHHHhhhcCCCC---CC-hHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI-VGKISLSCSVED---PI-ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEE 196 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~~ll~~l~~~~---~~-~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~ 196 (547)
+.+.....|+|+||+| +.+++.-+.... .. +.-..+-.+.+...|.|+||+++-+|+...+..-+......+.+.
T Consensus 202 i~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~h 281 (325)
T KOG4223|consen 202 IAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARH 281 (325)
T ss_pred HHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHH
Confidence 6778889999999999 555444332211 11 111223457888999999999999999988877677788899999
Q ss_pred HHHHhcCCCCCCcCHHHHHH
Q 008959 197 LFKAADKNGDGVVSVDELAA 216 (547)
Q Consensus 197 ~F~~~D~d~dG~Is~~Ef~~ 216 (547)
++...|.|+||++|++|+..
T Consensus 282 L~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 282 LLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HhhhhccCccccccHHHHhh
Confidence 99999999999999999875
No 78
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=97.83 E-value=1.4e-05 Score=73.98 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=42.6
Q ss_pred EEEEEEeecc------cccCCceEEEEEcccceEeeeecCC-CCCCCchhhHHHHH
Q 008959 55 IALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDN-TDKPIWNSEKKLLL 103 (547)
Q Consensus 55 i~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~-tLnP~Wne~~kll~ 103 (547)
.|+|+|++|+ ..+++||||++.+|.+..||+++.+ ++||+|||.+.+.+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v 56 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVA 56 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEe
Confidence 4899999995 3678999999999999999999977 69999999766654
No 79
>PLN02964 phosphatidylserine decarboxylase
Probab=97.83 E-value=6.7e-05 Score=83.88 Aligned_cols=88 Identities=14% Similarity=0.202 Sum_probs=68.5
Q ss_pred CChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC-CcchHHH---HHHHHHHhcCCCCCCcCHHHHHHHHHhhhccC
Q 008959 150 PIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG-NQVAANK---KEELFKAADKNGDGVVSVDELAALLALQQEKE 225 (547)
Q Consensus 150 ~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg-~~~~~ee---l~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~~ 225 (547)
.+..+.+.++++|..+|.|++|.+ +..++..+| ...++++ ++++|+.+|.|++|.|+++||..+|..++...
T Consensus 137 f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~ 212 (644)
T PLN02964 137 FVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLV 212 (644)
T ss_pred ccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCC
Confidence 344455669999999999999997 777888888 4666666 89999999999999999999999999876533
Q ss_pred cccccchhHHHHHhhhcccC
Q 008959 226 PLMNCCPVCGETLEVADMVN 245 (547)
Q Consensus 226 ~~~~~~~~~~~~l~~~D~~~ 245 (547)
.+ ..+.++++..|.++
T Consensus 213 se----EEL~eaFk~fDkDg 228 (644)
T PLN02964 213 AA----NKKEELFKAADLNG 228 (644)
T ss_pred CH----HHHHHHHHHhCCCC
Confidence 32 34666666556443
No 80
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=97.80 E-value=1.5e-05 Score=69.93 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=42.2
Q ss_pred EEEEEEeecc------cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHH
Q 008959 55 IALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 55 i~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
||+|+|++|+ ..+..|||+.+.++++..||+++++++||+||+.+...+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~ 55 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHL 55 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEe
Confidence 6899999995 246789999999999999999999999999999655433
No 81
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=97.78 E-value=2.3e-05 Score=73.16 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=31.4
Q ss_pred cCCceEEEEEcccc-eEeeeecCCCCCCCchhhHHHHH
Q 008959 67 FKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 67 ~~dd~~~~v~~g~~-~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+++||||.+.+++. ..||+++++++||+|||.+.+.+
T Consensus 56 g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE~F~~~~ 93 (158)
T cd04015 56 ITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYC 93 (158)
T ss_pred CCcCeEEEEEECCeEeeEEEEeCCCCCCccceEEEEEc
Confidence 34699999999974 57999999999999999777654
No 82
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.75 E-value=7.1e-05 Score=63.14 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=48.5
Q ss_pred HHHHHHhhC-CCCCch-h----HHHHhhh-cCC---CCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008959 122 DSEVFDLLD-PSSSNK-I----VGKISLS-CSV---EDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 185 (547)
Q Consensus 122 l~~~F~~~D-~d~dG~-I----l~~ll~~-l~~---~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l 185 (547)
+.++|+.|| .|++|. | +..++.. ++. ..+++.+ ++.+|+.+|.|++|.|+++||..++..+
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~---v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADA---VDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 899999997 999994 8 5566643 321 1345555 9999999999999999999999998764
No 83
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=97.75 E-value=1.9e-05 Score=70.25 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=46.2
Q ss_pred EEEEEeecc-c-ccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHHhcCCCcccceecc
Q 008959 56 ALLTLISAE-M-KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVF 116 (547)
Q Consensus 56 ~~i~~~~A~-~-~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~e~~~~~~~~isl~ 116 (547)
|.|.|++|+ + ....||||++.++++..||+++++++||+|||.+.............+.++
T Consensus 2 L~V~Vi~a~~L~~~~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~ 64 (121)
T cd08378 2 LYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVW 64 (121)
T ss_pred EEEEEEEecCCCcccCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEE
Confidence 789999996 2 118999999999999999999999999999996655543222333444433
No 84
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.73 E-value=2.4e-05 Score=69.14 Aligned_cols=51 Identities=25% Similarity=0.443 Sum_probs=43.1
Q ss_pred eeEEEEEEeecc-c------ccCCceEEEEEccc--ceEeeeecCCCCCCCchhhHHHHH
Q 008959 53 AGIALLTLISAE-M------KFKDKWLACVSLGE--QTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 53 ~gi~~i~~~~A~-~------~~~dd~~~~v~~g~--~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+|+|+|+|++|+ + .+..|||+++.++. +.+||++++++++|.||+.+...+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v 60 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILV 60 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEe
Confidence 599999999995 1 24579999999988 899999999999999999655443
No 85
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.73 E-value=5.7e-05 Score=64.28 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=48.0
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 184 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~ 184 (547)
+.++|..+|.|++|.| +..++... ..++.+ +..+|+.+|.+++|.|+++||..++..
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~e---v~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTL---LAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHH---HHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 8999999999999999 55555554 344555 889999999999999999999998865
No 86
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=97.72 E-value=2.2e-05 Score=69.21 Aligned_cols=61 Identities=25% Similarity=0.424 Sum_probs=46.3
Q ss_pred EEEEEeecc-cccCCceEEEEEcc-----cceEeeeecCCCCCCCchhhHHHHHhcCCCcccceecccC
Q 008959 56 ALLTLISAE-MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFED 118 (547)
Q Consensus 56 ~~i~~~~A~-~~~~dd~~~~v~~g-----~~~frT~vi~~tLnP~Wne~~kll~e~~~~~~~~isl~e~ 118 (547)
|.|+|.+|+ +.+..|||+++.+. ...+||+++++++||+|||.+.+-++ ......+.+++.
T Consensus 1 L~V~V~~A~~L~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~ 67 (118)
T cd08686 1 LNVIVHSAQGFKQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEK 67 (118)
T ss_pred CEEEEEeCCCCCCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEc
Confidence 578999995 67778999999774 24699999999999999997776653 233455555553
No 87
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.71 E-value=5.5e-05 Score=64.11 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=48.8
Q ss_pred HHHHHHhhCC-CC-Cchh----HHHHhhh-----cCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 008959 122 DSEVFDLLDP-SS-SNKI----VGKISLS-----CSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG 186 (547)
Q Consensus 122 l~~~F~~~D~-d~-dG~I----l~~ll~~-----l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg 186 (547)
+..+|..||. |+ +|.| +..++.. ++. .+++.+ ++.+++.+|.+++|.|+++||..++..++
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~-~~s~~e---i~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKN-QKDPMA---VDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhc-cccHHH---HHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 8899999997 97 6999 5555544 232 445555 89999999999999999999999987654
No 88
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=97.70 E-value=3.2e-05 Score=69.13 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=41.5
Q ss_pred EEEEEeecc------cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|+|+|++|+ ..+.+||||++.++++..||+++++++||+|||.+...+
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~ 55 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNV 55 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEc
Confidence 789999994 356789999999999999999999999999999555433
No 89
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=97.69 E-value=4.4e-05 Score=67.49 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=45.1
Q ss_pred cccccceeEEEEEEeecc---cccCCceEEEEEccc----ceEeeeecCCCCCCCchhhHHH
Q 008959 47 LNEEDFAGIALLTLISAE---MKFKDKWLACVSLGE----QTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 47 ~~~~~~~gi~~i~~~~A~---~~~~dd~~~~v~~g~----~~frT~vi~~tLnP~Wne~~kl 101 (547)
++=+...|-|.|+|++|+ +.+.+|||+.+.+.. ...+|++.++++||+|||.+..
T Consensus 7 L~Y~~~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F 68 (118)
T cd08677 7 LSYDKQKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVF 68 (118)
T ss_pred EEEcCcCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEE
Confidence 344677899999999995 455689999999864 5889999999999999995433
No 90
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=97.68 E-value=3.6e-05 Score=68.30 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=41.4
Q ss_pred EEEEEeecc------cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|+|+|++|+ ..+..|||+.+.++++..+|+++++++||+||+.+...+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~ 55 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFEL 55 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEc
Confidence 789999995 245679999999999999999999999999999666554
No 91
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.68 E-value=0.00018 Score=75.07 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=57.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcC----CcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 156 SFARRILSIVDYNQDGQLSFKEFSDLISAFG----NQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 156 ~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg----~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
.-++.+|..+|.|++|.|+.+||.+++.-++ ..++.+++-++=+.+|.|+||.|++.||.+.++-.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 3466899999999999999999999987654 45788899999999999999999999999988653
No 92
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=97.67 E-value=4.5e-05 Score=67.81 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=39.3
Q ss_pred EEEEEeecc-c----ccCCceEEEEEc-c------cceEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE-M----KFKDKWLACVSL-G------EQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~-~----~~~dd~~~~v~~-g------~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|+|.|++|+ + .+.+|||+++.+ | .+.+||+++++++||+|||.+...+
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v 61 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFIL 61 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEe
Confidence 789999995 1 367899999996 4 2478999999999999999666554
No 93
>PF14658 EF-hand_9: EF-hand domain
Probab=97.65 E-value=0.00011 Score=57.70 Aligned_cols=58 Identities=17% Similarity=0.372 Sum_probs=51.8
Q ss_pred HHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHh
Q 008959 124 EVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQD-GQLSFKEFSDLISA 184 (547)
Q Consensus 124 ~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~d-G~Is~~Ef~~~l~~ 184 (547)
.+|++||+++.|.+ +..++++++...|++.+ ++.+.+.+|+++. |.|+++.|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~---Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESE---LQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHH---HHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 36899999999999 77788999887788887 9999999999988 99999999999864
No 94
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=97.64 E-value=2.9e-05 Score=68.56 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=40.5
Q ss_pred EEEEEEeecc------cccCCceEEEEEcc---cceEeeeecCCCCCCCchhhHHHHH
Q 008959 55 IALLTLISAE------MKFKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 55 i~~i~~~~A~------~~~~dd~~~~v~~g---~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
.|.|+|++|+ ..++.|||+++.++ .+..||+++++++||+||+.+...+
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i 58 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRI 58 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEe
Confidence 3789999995 24578999999986 4789999999999999999666544
No 95
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.63 E-value=0.00022 Score=63.73 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCC--CCCCcCHHHHHHHHHhhhccCcccc
Q 008959 152 ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKN--GDGVVSVDELAALLALQQEKEPLMN 229 (547)
Q Consensus 152 ~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d--~dG~Is~~Ef~~~l~~l~~~~~~~~ 229 (547)
.+....++++|..||..+||+|+....-+.|+.+|.+.+++++.+....++.+ +-..|+|++|.-++..+........
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t 86 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGT 86 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCc
Confidence 33445599999999999999999999999999999999999999999999888 4568999999999988876543321
Q ss_pred cchhHHHHHhhhcccCc
Q 008959 230 CCPVCGETLEVADMVNT 246 (547)
Q Consensus 230 ~~~~~~~~l~~~D~~~~ 246 (547)
. ..+-+-|+..|..+.
T Consensus 87 ~-edfvegLrvFDkeg~ 102 (152)
T KOG0030|consen 87 Y-EDFVEGLRVFDKEGN 102 (152)
T ss_pred H-HHHHHHHHhhcccCC
Confidence 1 345555666665443
No 96
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.60 E-value=0.00015 Score=60.86 Aligned_cols=60 Identities=15% Similarity=0.340 Sum_probs=48.9
Q ss_pred HHHHHHhhCC-CC-Cchh----HHHHhhh---cCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008959 122 DSEVFDLLDP-SS-SNKI----VGKISLS---CSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 185 (547)
Q Consensus 122 l~~~F~~~D~-d~-dG~I----l~~ll~~---l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l 185 (547)
+..+|..||. |+ +|.| +..++.. ++ ..+++++ +.++++.+|.|++|.|+++||..++..+
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg-~k~t~~e---v~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIG-SKLQDAE---IAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC-CCCCHHH---HHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 7889999998 77 7888 6666642 34 3566766 8999999999999999999999988754
No 97
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.60 E-value=7.1e-05 Score=67.09 Aligned_cols=97 Identities=27% Similarity=0.377 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchH-HHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhcc-Ccccc
Q 008959 152 ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAA-NKKEELFKAADKNGDGVVSVDELAALLALQQEK-EPLMN 229 (547)
Q Consensus 152 ~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~-eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~-~~~~~ 229 (547)
-.+.++-+++-+.|..||.|.+++++|.+++.-+.+.-+. -++.-+|+.+|-|+|++|..+++...++.+... ....+
T Consensus 67 Lkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eE 146 (189)
T KOG0038|consen 67 LKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEE 146 (189)
T ss_pred hhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHH
Confidence 3344566788889999999999999999999876554333 356678999999999999999999999988543 22223
Q ss_pred cchhHHHHHhhhcccCccc
Q 008959 230 CCPVCGETLEVADMVNTMI 248 (547)
Q Consensus 230 ~~~~~~~~l~~~D~~~~l~ 248 (547)
...+|.++|++.|.+++..
T Consensus 147 v~~i~ekvieEAD~DgDgk 165 (189)
T KOG0038|consen 147 VELICEKVIEEADLDGDGK 165 (189)
T ss_pred HHHHHHHHHHHhcCCCCCc
Confidence 3357999999999877653
No 98
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=97.59 E-value=5.9e-05 Score=67.14 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=41.9
Q ss_pred eeEEEEEEeecc-c----ccCCceEEEEEcc-----cceEeeeecCCCCCCCchhhHHH
Q 008959 53 AGIALLTLISAE-M----KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 53 ~gi~~i~~~~A~-~----~~~dd~~~~v~~g-----~~~frT~vi~~tLnP~Wne~~kl 101 (547)
.|.|.|+|++|+ + ++..||||.+.++ .+..||+++++++||+|||.+..
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f 70 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVY 70 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEE
Confidence 689999999994 2 6678999999997 45789999999999999995543
No 99
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=97.59 E-value=6.5e-05 Score=65.47 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=41.8
Q ss_pred EEEEEEeecc-c-ccCCceEEEEEcccceEeeeecCCCCCCCchhhHHH
Q 008959 55 IALLTLISAE-M-KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 55 i~~i~~~~A~-~-~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kl 101 (547)
-|+|+|++|+ + ++..||||.+.++++..||++++++++|+|||.+..
T Consensus 5 ~l~V~v~~a~~L~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f 53 (111)
T cd04011 5 QVRVRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFF 53 (111)
T ss_pred EEEEEEEEcccCCCCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEE
Confidence 4799999996 3 788999999999999999999999999999995443
No 100
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=97.58 E-value=7.1e-05 Score=65.79 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=42.8
Q ss_pred eEEEEEEeecc------cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHH
Q 008959 54 GIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLL 102 (547)
Q Consensus 54 gi~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll 102 (547)
|-|+|+|++|+ .....|||+.+.++.+..||+++++++||.||+.+.+-
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~ 55 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFP 55 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEE
Confidence 78999999995 45678999999999999999999999999999955443
No 101
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=97.58 E-value=5.2e-05 Score=67.49 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=41.1
Q ss_pred EEEEEeecc------cccCCceEEEEEcc-cceEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLG-EQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g-~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|+|+|++|+ ..+..|||+++.++ .+.+||+++++++||+|||.+.+.+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~ 56 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTV 56 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEe
Confidence 789999995 24578999999995 8899999999999999999666655
No 102
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=97.57 E-value=6.3e-05 Score=66.57 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=40.5
Q ss_pred EEEEEeecc------cccCCceEEEEEccc-ceEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g~-~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|+|+|++|+ ..++.|||+.+.++. +.+||+++++++||+|||.+...+
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v 56 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPI 56 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEe
Confidence 789999994 356889999999987 789999999999999999665543
No 103
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.57 E-value=5.3e-05 Score=67.61 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=40.6
Q ss_pred EEEEEEeecc------cccCCceEEEEEcccce--EeeeecCCCCCCCchhhHHHH
Q 008959 55 IALLTLISAE------MKFKDKWLACVSLGEQT--CRTAISDNTDKPIWNSEKKLL 102 (547)
Q Consensus 55 i~~i~~~~A~------~~~~dd~~~~v~~g~~~--frT~vi~~tLnP~Wne~~kll 102 (547)
+|||.|++|+ ..++.|||+.+..|.+. .||+++++++||+|||.+.+.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~ 56 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELE 56 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEE
Confidence 5899999995 35789999999999986 578889999999999965553
No 104
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.57 E-value=0.00017 Score=56.36 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=45.5
Q ss_pred HHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 008959 123 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 184 (547)
Q Consensus 123 ~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~ 184 (547)
+++|..+|.|++|.| +..++..++ .+.++ ++.+|+.+|.+++|.|+++||..++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~---~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSV---LAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHH---HHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 578999999999999 555555543 24444 899999999999999999999998864
No 105
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.51 E-value=0.00069 Score=56.88 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHh-c----CCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhh
Q 008959 157 FARRILSIVDYNQDGQLSFKEFSDLISA-F----GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQ 222 (547)
Q Consensus 157 ~l~~~f~~~D~d~dG~Is~~Ef~~~l~~-l----g~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~ 222 (547)
.+...|..+- .+.++++..||..++.. + .....++.++++++..|.|+||.|+|.||..++..+.
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4677888887 34579999999999965 4 3445677899999999999999999999999997753
No 106
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=97.50 E-value=8.8e-05 Score=65.77 Aligned_cols=53 Identities=19% Similarity=0.143 Sum_probs=44.6
Q ss_pred cccceeEEEEEEeecc------cccCCceEEEEEccc-----ceEeeeecCCCCCCCchhhHHH
Q 008959 49 EEDFAGIALLTLISAE------MKFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 49 ~~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g~-----~~frT~vi~~tLnP~Wne~~kl 101 (547)
-+...|.|.|+|++|+ ..+..|||+.+.++. +..||++++++++|+||+.+..
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f 74 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEY 74 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEE
Confidence 3667789999999995 356789999999864 7889999999999999996544
No 107
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.50 E-value=0.00012 Score=64.96 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=41.5
Q ss_pred eEEEEEEeecc------cccCCceEEEEEccc-ceEeeeecCCCCCCCchhhHHH
Q 008959 54 GIALLTLISAE------MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 54 gi~~i~~~~A~------~~~~dd~~~~v~~g~-~~frT~vi~~tLnP~Wne~~kl 101 (547)
|+|+|+|++|+ ..++.|||+++.+++ +..+|++.+++++|+||+.+..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~ 55 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYV 55 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEE
Confidence 89999999994 467899999999976 5799999999999999995433
No 108
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.49 E-value=0.00019 Score=76.14 Aligned_cols=52 Identities=29% Similarity=0.462 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008959 156 SFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 156 ~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
..++.+|+.+|.|+||.|+.+||.. ++.+|+.+|.|+||.|+++||.+.+..
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3489999999999999999999942 578999999999999999999998865
No 109
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=97.49 E-value=0.00011 Score=65.28 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=45.2
Q ss_pred cccccceeEEEEEEeecc------cccCCceEEEEEcc---cceEeeeecCCCCCCCchhhHHH
Q 008959 47 LNEEDFAGIALLTLISAE------MKFKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 47 ~~~~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g---~~~frT~vi~~tLnP~Wne~~kl 101 (547)
+.-+.-.|.|+|+|++|+ ..+..|||+.+.++ .+.+||++++++++|+|||.+..
T Consensus 9 l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f 72 (124)
T cd08387 9 LEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72 (124)
T ss_pred EEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEE
Confidence 444666899999999994 46678999999973 56899999999999999995444
No 110
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=97.49 E-value=0.00014 Score=65.46 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=43.5
Q ss_pred ceeEEEEEEeecc-c---c------------cCCceEEEEEcccce-EeeeecCCCCCCCchhhHHHHH
Q 008959 52 FAGIALLTLISAE-M---K------------FKDKWLACVSLGEQT-CRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 52 ~~gi~~i~~~~A~-~---~------------~~dd~~~~v~~g~~~-frT~vi~~tLnP~Wne~~kll~ 103 (547)
+.|+|+|+|++|+ + . +..||||.+.++++. .||++.+++++|.|||.+...+
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v 70 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEV 70 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEc
Confidence 4699999999994 1 1 468999999999865 6999999999999999776655
No 111
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=97.47 E-value=0.00012 Score=68.00 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=44.6
Q ss_pred ccceeEEEEEEeecc------cccCCceEEEEEccc-----------------------------ceEeeeecCCCCCCC
Q 008959 50 EDFAGIALLTLISAE------MKFKDKWLACVSLGE-----------------------------QTCRTAISDNTDKPI 94 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g~-----------------------------~~frT~vi~~tLnP~ 94 (547)
..-.++|+|+|++|+ ..+.+||||.+.++. +..||++++++++|+
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 455899999999995 357899999998863 358999999999999
Q ss_pred chhhHHHHH
Q 008959 95 WNSEKKLLL 103 (547)
Q Consensus 95 Wne~~kll~ 103 (547)
||+.+.+.+
T Consensus 104 WnE~F~f~v 112 (153)
T cd08676 104 WNETFRFEV 112 (153)
T ss_pred cccEEEEEe
Confidence 999666554
No 112
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=97.46 E-value=0.00011 Score=65.70 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=40.9
Q ss_pred eeEEEEEEeecc-c--ccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHH
Q 008959 53 AGIALLTLISAE-M--KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 53 ~gi~~i~~~~A~-~--~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
||-|.|.|++|+ + ...-+|||++.+|++..+|++.+.+ ||.|||.+..-.
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~ 53 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEI 53 (127)
T ss_pred CceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEE
Confidence 688999999996 2 2233899999999999999999885 999999554444
No 113
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=97.45 E-value=0.00012 Score=65.80 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=42.5
Q ss_pred ccceeEEEEEEeecc------c-ccCCceEEEEEcc---cceEeeeecCCCCCCCchhhHHH
Q 008959 50 EDFAGIALLTLISAE------M-KFKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~------~-~~~dd~~~~v~~g---~~~frT~vi~~tLnP~Wne~~kl 101 (547)
+.-.+.|.|+|++|+ . ++..||||.+.++ .+..||+++++++||+|||.+..
T Consensus 12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f 73 (128)
T cd08388 12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTF 73 (128)
T ss_pred ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEE
Confidence 334578999999995 1 3678999999875 56889999999999999996654
No 114
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=97.43 E-value=5.8e-05 Score=67.90 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=43.9
Q ss_pred ccceeEEEEEEeecc------cccCCceEEEEEcc-----cceEeeeecCCCCCCCchhhHHHHH
Q 008959 50 EDFAGIALLTLISAE------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g-----~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+...|.|.|+|++|+ ..+..|||+.+.++ .+..||++++++++|+||+.+..-+
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~ 73 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDI 73 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEEC
Confidence 566899999999995 35578999999885 3578999999999999999555433
No 115
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=97.43 E-value=5.7e-05 Score=68.36 Aligned_cols=54 Identities=19% Similarity=0.111 Sum_probs=43.2
Q ss_pred ccccceeEEEEEEeecc------cccCCceEEEEEcc-----cceEeeeecCCCCCCCchhhHHH
Q 008959 48 NEEDFAGIALLTLISAE------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 48 ~~~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g-----~~~frT~vi~~tLnP~Wne~~kl 101 (547)
+-+...|.|.|+|++|+ ..++.|||+.+.+. ....||++++++++|+||+.+..
T Consensus 9 ~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f 73 (136)
T cd08405 9 CYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIF 73 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEE
Confidence 33566789999999995 46678999998872 24679999999999999995543
No 116
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=97.43 E-value=0.00012 Score=63.71 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=40.2
Q ss_pred EEEEEeecc----c---ccCCceEEEEEcccceEeeeecCCCCCCCc-hhhHHHHH
Q 008959 56 ALLTLISAE----M---KFKDKWLACVSLGEQTCRTAISDNTDKPIW-NSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~----~---~~~dd~~~~v~~g~~~frT~vi~~tLnP~W-ne~~kll~ 103 (547)
|.|+|++|+ + .+..|||+++.+|.+..||++++++++|+| ||.+...+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i 56 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEV 56 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEc
Confidence 578999995 2 356799999999999999999999999999 88554444
No 117
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=97.41 E-value=0.00018 Score=63.95 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=43.0
Q ss_pred eEEEEEEeecc------cccCCceEEEEEcccceEeeeecCC-CCCCCchhhHHHHH
Q 008959 54 GIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDN-TDKPIWNSEKKLLL 103 (547)
Q Consensus 54 gi~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~-tLnP~Wne~~kll~ 103 (547)
|.|.|+|++|+ ...+.|||++++++++..+|++.++ +++|.||+.+...+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v 57 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTV 57 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEe
Confidence 78999999995 3568999999999999999999985 99999999555444
No 118
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.40 E-value=0.00017 Score=48.03 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=14.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHH
Q 008959 158 ARRILSIVDYNQDGQLSFKEFSDLIS 183 (547)
Q Consensus 158 l~~~f~~~D~d~dG~Is~~Ef~~~l~ 183 (547)
++.+|+.+|.|++|+|+.+||..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45555555555555555555555555
No 119
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.40 E-value=0.0002 Score=47.65 Aligned_cols=30 Identities=40% Similarity=0.623 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHH-hhh
Q 008959 193 KKEELFKAADKNGDGVVSVDELAALLA-LQQ 222 (547)
Q Consensus 193 el~~~F~~~D~d~dG~Is~~Ef~~~l~-~l~ 222 (547)
+++++|+.+|.|+||+|+.+||.++++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999998 454
No 120
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.39 E-value=0.00014 Score=67.24 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=39.9
Q ss_pred EEEEEEeecc----c--c--------------cCCceEEEEEcccceEeeeecCCCCCCCchhhHHHH
Q 008959 55 IALLTLISAE----M--K--------------FKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLL 102 (547)
Q Consensus 55 i~~i~~~~A~----~--~--------------~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll 102 (547)
+|.|+|++|+ | . ...|||+++.++++..||+++++++||+|||.+.+-
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~ 68 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFP 68 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEE
Confidence 3678889995 1 1 357999999999999999999999999999965543
No 121
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=97.39 E-value=0.00015 Score=67.87 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=42.0
Q ss_pred cceeEEEEEEeecc------cccCCceEEEEEc-----ccceEeeeecCCCCCCCchhhHH
Q 008959 51 DFAGIALLTLISAE------MKFKDKWLACVSL-----GEQTCRTAISDNTDKPIWNSEKK 100 (547)
Q Consensus 51 ~~~gi~~i~~~~A~------~~~~dd~~~~v~~-----g~~~frT~vi~~tLnP~Wne~~k 100 (547)
...|.|.|+|++|+ ..+..||||.+.+ +.+..||+++++++||+||+.+.
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~ 84 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFV 84 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEE
Confidence 35799999999995 2467799999887 56789999999999999999544
No 122
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=97.39 E-value=0.00015 Score=64.80 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=45.0
Q ss_pred cccccceeEEEEEEeecc-------cccCCceEEEEEcc-----cceEeeeecCCCCCCCchhhHHHHH
Q 008959 47 LNEEDFAGIALLTLISAE-------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 47 ~~~~~~~gi~~i~~~~A~-------~~~~dd~~~~v~~g-----~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+.-+...|.|.|+|++|+ ..+..|||+.+.+. ....||++.++++||+|||.+..-+
T Consensus 8 l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i 76 (125)
T cd04029 8 LSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSI 76 (125)
T ss_pred EEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEEC
Confidence 344667899999999995 14679999998885 3467999999999999999654433
No 123
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.38 E-value=0.00031 Score=58.58 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=47.6
Q ss_pred HHHHHHhhCC--CCCchh----HHHHhhh-cCC---CCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008959 122 DSEVFDLLDP--SSSNKI----VGKISLS-CSV---EDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 185 (547)
Q Consensus 122 l~~~F~~~D~--d~dG~I----l~~ll~~-l~~---~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l 185 (547)
++++|..||. |++|.| +..++.. ++. ..++..+ +..++..+|.+++|.|+++||..++..+
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~e---i~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEA---VDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHH---HHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 8889999999 899999 5555543 221 1123444 8999999999999999999999998754
No 124
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=97.38 E-value=0.00016 Score=64.70 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=40.8
Q ss_pred EEEEEEeecc------cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHH
Q 008959 55 IALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 55 i~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kl 101 (547)
-|+|+|++|+ ..++.|||+++.++.+..||++++++++|.||+.+..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f 54 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHF 54 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEE
Confidence 4789999995 3457799999999999999999999999999996654
No 125
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=97.37 E-value=6.8e-05 Score=68.15 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=41.4
Q ss_pred ccceeEEEEEEeecc------cccCCceEEEEEc---ccc--eEeeeecCCCCCCCchhhHHH
Q 008959 50 EDFAGIALLTLISAE------MKFKDKWLACVSL---GEQ--TCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~------~~~~dd~~~~v~~---g~~--~frT~vi~~tLnP~Wne~~kl 101 (547)
+...+.|.|+|++|+ ..+.+|||+.+.+ +.+ ..||++.++++||+|||.+..
T Consensus 11 ~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F 73 (136)
T cd08406 11 LPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIF 73 (136)
T ss_pred cCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEE
Confidence 455678999999995 3567899999988 333 668999999999999995443
No 126
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.37 E-value=0.0006 Score=51.17 Aligned_cols=57 Identities=28% Similarity=0.415 Sum_probs=45.4
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLI 182 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l 182 (547)
+..+|..+|.+++|.+ +..++..++. ..+... +..+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~---~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE-GLSEEE---IDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHH---HHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4578999999999998 5555555543 444555 8889999999999999999998765
No 127
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.36 E-value=0.00058 Score=59.07 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008959 151 IETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 151 ~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
+++|......+|+..|. ++|.|+-++...++...+ ++.+.+.+++...|.|+||+++++||.-+|+-
T Consensus 5 s~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 45556668899999885 689999999999998766 88899999999999999999999999988854
No 128
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=97.35 E-value=0.00021 Score=63.31 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=39.2
Q ss_pred EEEEEeecc------cccCCceEEEEEcccc-eEeeeecCCCCCCCchhhHHHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLL 102 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g~~-~frT~vi~~tLnP~Wne~~kll 102 (547)
|.|.|++|+ ..++.|||+++.++++ .+||+++++++||+||+.+..-
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~ 55 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVH 55 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEe
Confidence 678999995 3568899999999776 5799999999999999965543
No 129
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=97.35 E-value=0.00026 Score=64.04 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=40.2
Q ss_pred EEEEEeecc------cccCCceEEEEEcccceEeeeecCCCCCCCchhhHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKK 100 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~k 100 (547)
|+|+|++|+ ..+..|||+.+.++.+..||+++++++||+||+.+.
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~ 53 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLI 53 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEE
Confidence 789999995 366889999999999999999999999999999543
No 130
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=97.34 E-value=0.00014 Score=67.17 Aligned_cols=48 Identities=19% Similarity=0.136 Sum_probs=40.5
Q ss_pred EEEEEeecc----cccCCceEEEEEccc-----ceEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE----MKFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~----~~~~dd~~~~v~~g~-----~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|.|+|++|+ ..+..||||.+.++. +..||+++++++||+|||.+..-+
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v 58 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDV 58 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEE
Confidence 789999995 246789999999987 789999999999999999655443
No 131
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=97.34 E-value=0.00021 Score=63.49 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=39.2
Q ss_pred EEEEEeecc----c---ccCCceEEEEEcccc-eEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE----M---KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~----~---~~~dd~~~~v~~g~~-~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|+|.|++|+ + .+..||||.+.++.+ .+||+++++++||+|||.+..-+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v 57 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEI 57 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEc
Confidence 678899994 1 246799999999876 79999999999999999665544
No 132
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=97.33 E-value=0.00026 Score=63.31 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=37.9
Q ss_pred eEEEEEEeecc---cccCCceEEEEEccc-ceEeeeecCCCCCCCchhhHHH
Q 008959 54 GIALLTLISAE---MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 54 gi~~i~~~~A~---~~~~dd~~~~v~~g~-~~frT~vi~~tLnP~Wne~~kl 101 (547)
..|+|+|++|+ .....||||.+.+++ +..||++ ++++||+|||.+..
T Consensus 4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f 54 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVF 54 (126)
T ss_pred eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEE
Confidence 46999999995 244679999999987 4589997 56899999995544
No 133
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.31 E-value=0.00064 Score=50.45 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=41.7
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 172 QLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 172 ~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
+++++|...+|+.+...++++-+..+|+..|++++|.+..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999988764
No 134
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.30 E-value=0.00023 Score=45.06 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=13.0
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHH
Q 008959 195 EELFKAADKNGDGVVSVDELAAL 217 (547)
Q Consensus 195 ~~~F~~~D~d~dG~Is~~Ef~~~ 217 (547)
+++|+.+|.|+||.||.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 44555555555555555555553
No 135
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=97.28 E-value=0.00027 Score=62.74 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=43.6
Q ss_pred ccceeEEEEEEeecc------cccCCceEEEEEcc---cceEeeeecCCCCCCCchhhHHHHH
Q 008959 50 EDFAGIALLTLISAE------MKFKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g---~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+.-.|.|.|+|++|+ ..+..|||+.+.+. .+.+||+++++++||+|||.+...+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i 74 (124)
T cd08385 12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKV 74 (124)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeC
Confidence 455688999999995 35678999998874 4689999999999999999555443
No 136
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.25 E-value=0.00056 Score=57.48 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=44.9
Q ss_pred HHHHHHh-hCCCCCc-hh----HHHHhhhcC----CCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008959 122 DSEVFDL-LDPSSSN-KI----VGKISLSCS----VEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 185 (547)
Q Consensus 122 l~~~F~~-~D~d~dG-~I----l~~ll~~l~----~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l 185 (547)
+..+|.. +|.|++| .| +..++.... .....+.+ +..+++.+|.|+||.|+++||..++..+
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~---~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGV---LDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHH---HHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 7889998 7788986 77 444444321 11222344 8999999999999999999999988764
No 137
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=97.24 E-value=0.00028 Score=62.73 Aligned_cols=54 Identities=7% Similarity=0.055 Sum_probs=44.6
Q ss_pred ccceeEEEEEEeecc------cccCCceEEEEEcc-----cceEeeeecCCCCCCCchhhHHHHH
Q 008959 50 EDFAGIALLTLISAE------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g-----~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+.-.|.|.|+|++|+ .....|||+.+.+. ...+||+++++++||+|||.+...+
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i 76 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPV 76 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEec
Confidence 455788999999995 24788999999986 5789999999999999999655444
No 138
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.23 E-value=0.00041 Score=81.09 Aligned_cols=135 Identities=22% Similarity=0.289 Sum_probs=97.4
Q ss_pred eeecCCCCCCCchhhHHHHHhc------CCCcccceecccChHH-HHHHHHhhCCCCCchh----HHHHhhhcCCCCCCh
Q 008959 84 TAISDNTDKPIWNSEKKLLLET------NGPHVARISVFEDSDA-DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIE 152 (547)
Q Consensus 84 T~vi~~tLnP~Wne~~kll~e~------~~~~~~~isl~e~~~e-l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~ 152 (547)
|..+.+.+-..|++.+++.... ....-..-+++|.+.. +.-+|+.||.+.+|.+ |..+++++++.-|..
T Consensus 2210 t~~st~GlaqqwdQl~qL~~rMqhnlEQqIqarn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmv 2289 (2399)
T KOG0040|consen 2210 TEHSTVGLAQQWDQLDQLMMRMQHNLEQQIQARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMV 2289 (2399)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCccc
Confidence 3445566777899988876621 1111222233444443 7789999999999998 888889988865543
Q ss_pred HH---HHHHHHHHHhhcCCCCCcccHHHHHHHHHhc--CCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 008959 153 TE---KSFARRILSIVDYNQDGQLSFKEFSDLISAF--GNQVAANKKEELFKAADKNGDGVVSVDELAALLA 219 (547)
Q Consensus 153 ~e---~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l--g~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~ 219 (547)
++ .+.++.++..+|++.+|+|+..|+..+|..- ..-.+.++++.+|+.+|. +.-+|+.+|+.+-|.
T Consensus 2290 Ee~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~lt 2360 (2399)
T KOG0040|consen 2290 EEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNLT 2360 (2399)
T ss_pred ccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhcCC
Confidence 33 3458899999999999999999999988663 223566789999999998 778899988876653
No 139
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=97.23 E-value=0.00026 Score=63.19 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=42.5
Q ss_pred ccceeEEEEEEeecc----c---ccCCceEEEEEcc-----cceEeeeecCCCCCCCchhhHHHH
Q 008959 50 EDFAGIALLTLISAE----M---KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLL 102 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~----~---~~~dd~~~~v~~g-----~~~frT~vi~~tLnP~Wne~~kll 102 (547)
+.-.|.|.|+|++|+ + ++..|||+.+.+. ....||+++++++||+|||.+..-
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~ 75 (125)
T cd08393 11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK 75 (125)
T ss_pred ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE
Confidence 444678999999995 2 3678999999884 346899999999999999955443
No 140
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.23 E-value=0.00074 Score=50.74 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=38.1
Q ss_pred Cchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 008959 134 SNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 184 (547)
Q Consensus 134 dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~ 184 (547)
+|.| +..++..++...+++++ +..+|..+|.|++|.|+++||..++..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e---~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEE---VDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHH---HHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHH---HHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 5666 55666555552277777 999999999999999999999999864
No 141
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=97.22 E-value=0.00035 Score=61.97 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=42.0
Q ss_pred cceeEEEEEEeecc------cccCCceEEEEEc---ccceEeeeecCCCCCCCchhhHHH
Q 008959 51 DFAGIALLTLISAE------MKFKDKWLACVSL---GEQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 51 ~~~gi~~i~~~~A~------~~~~dd~~~~v~~---g~~~frT~vi~~tLnP~Wne~~kl 101 (547)
.-.+.|+|+|++|+ ..++.|||+.+.+ +.+..||++++++++|+|||.+..
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f 72 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 72 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEE
Confidence 34568999999995 2567899999988 567899999999999999995543
No 142
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=97.22 E-value=0.00031 Score=64.52 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=42.8
Q ss_pred eeEEEEEEeecc-cccCCceEEEEEcccceE-eeeecCCCCCCCchhhHHH
Q 008959 53 AGIALLTLISAE-MKFKDKWLACVSLGEQTC-RTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 53 ~gi~~i~~~~A~-~~~~dd~~~~v~~g~~~f-rT~vi~~tLnP~Wne~~kl 101 (547)
..-|.|.|+||+ +.-+++|||.+.++++.+ ||+++.++.||.|+|.|.+
T Consensus 10 ~~sL~v~V~EAk~Lp~~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f 60 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEF 60 (146)
T ss_pred EEEEEEEEEEccCCCCcCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEe
Confidence 345899999996 567789999999999985 9999999999999996665
No 143
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=97.21 E-value=0.00034 Score=62.21 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=39.9
Q ss_pred EEEEEEeecc------cccCCceEEEEEccc---ceEeeeecCCCCCCCchhhHHHHH
Q 008959 55 IALLTLISAE------MKFKDKWLACVSLGE---QTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 55 i~~i~~~~A~------~~~~dd~~~~v~~g~---~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
.+.|+|++|+ ..++.|||+.+..+. +.+||++++++++|+|||.+...+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i 59 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEV 59 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEc
Confidence 5789999995 356789999998764 478999999999999999665544
No 144
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=97.20 E-value=0.00031 Score=63.41 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=43.7
Q ss_pred ccceeEEEEEEeecc------cccCCceEEEEEcc-------cceEeeeecCCCCCCCchhhHHHHH
Q 008959 50 EDFAGIALLTLISAE------MKFKDKWLACVSLG-------EQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g-------~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+.-.+.|+|+|++|+ ..+..|||+.+.+. ....||+++++++||+|||.+..-+
T Consensus 12 ~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i 78 (133)
T cd04009 12 RASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNV 78 (133)
T ss_pred cCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEe
Confidence 444578999999995 34678999999885 5689999999999999999655544
No 145
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=97.19 E-value=0.00018 Score=65.52 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=42.0
Q ss_pred cccccceeEEEEEEeecc----c----ccCCceEEEEEcccc-----eEeeeecCCCCCCCchhhHHH
Q 008959 47 LNEEDFAGIALLTLISAE----M----KFKDKWLACVSLGEQ-----TCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 47 ~~~~~~~gi~~i~~~~A~----~----~~~dd~~~~v~~g~~-----~frT~vi~~tLnP~Wne~~kl 101 (547)
++-..-.|-|.|.|++|+ + .+..|||+++.+..+ .-||++.++++||+|||.+..
T Consensus 8 L~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F 75 (138)
T cd08407 8 ISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMF 75 (138)
T ss_pred EEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEE
Confidence 333556788999999995 2 144799999987763 458999999999999994433
No 146
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=97.19 E-value=0.00041 Score=61.94 Aligned_cols=49 Identities=29% Similarity=0.413 Sum_probs=41.4
Q ss_pred EEEEEEeeccc-----ccCCceEEEEEcccc-eEeeeecCCCCCCCchhhHHHHH
Q 008959 55 IALLTLISAEM-----KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 55 i~~i~~~~A~~-----~~~dd~~~~v~~g~~-~frT~vi~~tLnP~Wne~~kll~ 103 (547)
.|+|+|++|++ .++.|||+.+.++++ ..||++++++++|+||+.+.+.+
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~ 57 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLV 57 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEe
Confidence 47899999964 456899999999988 99999999999999999665543
No 147
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.16 E-value=0.00026 Score=61.82 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=35.0
Q ss_pred ccccCCceEEEEEcccc-eEeeeecCCCCCCCchhhHHHHH
Q 008959 64 EMKFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 64 ~~~~~dd~~~~v~~g~~-~frT~vi~~tLnP~Wne~~kll~ 103 (547)
++.+++||||.+.++++ .+||+++++++||+||+.+...+
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v 48 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLV 48 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEe
Confidence 46788999999999875 68999999999999999777665
No 148
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=97.15 E-value=0.00045 Score=61.22 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=41.1
Q ss_pred ceeEEEEEEeecc----c-ccCCceEEEEEccc-----ceEeeeecCCCCCCCchhhHHH
Q 008959 52 FAGIALLTLISAE----M-KFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 52 ~~gi~~i~~~~A~----~-~~~dd~~~~v~~g~-----~~frT~vi~~tLnP~Wne~~kl 101 (547)
-.|.|.|+|++|+ + .+.+||||.+.++. ...||++.++++||+|||.+..
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f 69 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSF 69 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEE
Confidence 3578999999995 2 45789999999874 4779999999999999995544
No 149
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.14 E-value=0.0011 Score=58.55 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=44.1
Q ss_pred HHHHHHhhCCCCCchh-HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLI 182 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l 182 (547)
+.-.|..+|.|+||.| ..++.... . .+.+.. +..+|+.+|.|+||.||++||...+
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~-l-~~~e~~---~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR-L-DPNEHC---IKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH-c-cchHHH---HHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 8889999999999999 33333221 1 233344 7889999999999999999999988
No 150
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=97.10 E-value=0.00057 Score=60.95 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=38.9
Q ss_pred EEEEEeecc----cccCCceEEEEEcc--cceEeeeecCCCCCCCchhhHHHH
Q 008959 56 ALLTLISAE----MKFKDKWLACVSLG--EQTCRTAISDNTDKPIWNSEKKLL 102 (547)
Q Consensus 56 ~~i~~~~A~----~~~~dd~~~~v~~g--~~~frT~vi~~tLnP~Wne~~kll 102 (547)
|.|+|++|+ ..+++|||+++.++ .+.+||+++++++||+||+.+...
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~ 53 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFE 53 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEE
Confidence 568889995 24789999999998 467999999999999999965443
No 151
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=97.10 E-value=0.00053 Score=61.64 Aligned_cols=53 Identities=21% Similarity=0.178 Sum_probs=43.1
Q ss_pred ccceeEEEEEEeecc-c------ccCCceEEEEEcc-----cceEeeeecCCCCCCCchhhHHHH
Q 008959 50 EDFAGIALLTLISAE-M------KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLL 102 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~-~------~~~dd~~~~v~~g-----~~~frT~vi~~tLnP~Wne~~kll 102 (547)
+.-.+.|.|+|++|+ + ++..||||.+.+. .+..||++.++++||+|||.+..-
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~ 75 (128)
T cd08392 11 NFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV 75 (128)
T ss_pred eCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE
Confidence 556689999999995 1 3778999999885 347899999999999999955443
No 152
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.09 E-value=0.00047 Score=61.86 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=39.1
Q ss_pred EEEEEEeecc------cccCCceEEEEEcccc-------eEeeeecCCCCCCCchhhHHH
Q 008959 55 IALLTLISAE------MKFKDKWLACVSLGEQ-------TCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 55 i~~i~~~~A~------~~~~dd~~~~v~~g~~-------~frT~vi~~tLnP~Wne~~kl 101 (547)
+|+|+|++|+ ..++.|||+++.++.+ ..||++++++++|+||+.+..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f 60 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEE
Confidence 4899999994 3567899999999765 579999999999999995443
No 153
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.09 E-value=0.00059 Score=43.19 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHH
Q 008959 158 ARRILSIVDYNQDGQLSFKEFSDLI 182 (547)
Q Consensus 158 l~~~f~~~D~d~dG~Is~~Ef~~~l 182 (547)
++++|+.+|.|+||.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999864
No 154
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=97.06 E-value=0.00026 Score=64.46 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=45.3
Q ss_pred cccccceeEEEEEEeecc------cccCCceEEEEEccc------ceEeeeecCCCCCCCchhhHHHHH
Q 008959 47 LNEEDFAGIALLTLISAE------MKFKDKWLACVSLGE------QTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 47 ~~~~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g~------~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
++-+...|.|.|+|++|+ ..+..|||+.+.+.. ...||++.++++||+|||.+..-+
T Consensus 8 L~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i 76 (138)
T cd08408 8 LEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQV 76 (138)
T ss_pred eEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEEC
Confidence 334667899999999994 467889999998853 257999999999999999655444
No 155
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.02 E-value=0.00054 Score=59.78 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=38.4
Q ss_pred EEEEEeecc------cccCCceEEEEEccc-ceEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g~-~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|+|+|++|+ ..++.|||+++.+++ +.++|++..++++|+||+.+...+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~ 55 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV 55 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEe
Confidence 578999995 245788999998864 668999999999999999554443
No 156
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=97.01 E-value=0.00056 Score=59.78 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=38.8
Q ss_pred EEEEEeecc-c--ccCCceEEEEEcccc-eEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE-M--KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~-~--~~~dd~~~~v~~g~~-~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|+|+|++|+ + .+.+||||++.++++ .+||++.++ ++|+|||.+...+
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v 52 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDD 52 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEec
Confidence 678999995 1 278999999999985 589999999 9999999655544
No 157
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.98 E-value=0.0011 Score=66.91 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=76.1
Q ss_pred HHHHHHhhCCCCCchh-HHHHhhhcCC--C-CCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCcchHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI-VGKISLSCSV--E-DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVAANKKEE 196 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~~ll~~l~~--~-~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~-lg~~~~~eel~~ 196 (547)
+..+|.+||.+++|.+ +.+....+.. . .-+.+- ++.+|++|+.+.||.+.-.+|..+++. +| ...-++-.
T Consensus 261 l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~i---iq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~ 335 (412)
T KOG4666|consen 261 LAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVI---IQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPV 335 (412)
T ss_pred hhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHH---HHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccc
Confidence 8899999999999998 5554433321 1 222333 889999999999999999999998876 55 44446778
Q ss_pred HHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008959 197 LFKAADKNGDGVVSVDELAALLALQQE 223 (547)
Q Consensus 197 ~F~~~D~d~dG~Is~~Ef~~~l~~l~~ 223 (547)
+|...+...||+|++++|++++...++
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~~p~ 362 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAATEPN 362 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHhCch
Confidence 899999999999999999999976554
No 158
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=96.98 E-value=0.00069 Score=61.22 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=41.5
Q ss_pred ccceeEEEEEEeecc------cccCCceEEEEEccc-----ceEeeeecCCCCCCCchhhHH
Q 008959 50 EDFAGIALLTLISAE------MKFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKK 100 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g~-----~~frT~vi~~tLnP~Wne~~k 100 (547)
..-.|.|+|+|++|+ ..+..|||+.+.++. +..||++++++++|+||+.+.
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~ 72 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFS 72 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEE
Confidence 445689999999995 356789999999842 467899999999999999443
No 159
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=96.98 E-value=0.00075 Score=61.07 Aligned_cols=51 Identities=24% Similarity=0.250 Sum_probs=40.6
Q ss_pred cceeEEEEEEeecc------cccCCceEEEEEc--cc---ceEeeeecCCCCCCCchhhHHH
Q 008959 51 DFAGIALLTLISAE------MKFKDKWLACVSL--GE---QTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 51 ~~~gi~~i~~~~A~------~~~~dd~~~~v~~--g~---~~frT~vi~~tLnP~Wne~~kl 101 (547)
.-.|.|.|+|++|+ ..+..|||+.+.+ |. ++.+|+++++++||+|||.+..
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f 72 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSF 72 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEE
Confidence 34588999999995 3567899999987 32 3578999999999999995543
No 160
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=96.96 E-value=0.00051 Score=62.41 Aligned_cols=50 Identities=22% Similarity=0.194 Sum_probs=43.6
Q ss_pred hhhhhhhhhhhccCcccc-----cccchhHHHHHHHHHHHHHHhhCCccccccHH
Q 008959 318 DVKIVMSMRAIYQSKIGL-----GLMDIGTKELLKSISEKQGRKMNSVESSKEIP 367 (547)
Q Consensus 318 ~~~~~~~~~~~y~~~~g~-----~~l~~~~~~~~~~~s~~~g~~~~s~~S~~~I~ 367 (547)
.+.+++||+++..+++|. +|+++.||..+|.|.+.||.|+.||.|+.++.
T Consensus 69 ~glvG~P~naiLdwpM~T~sG~a~F~~p~vN~~lK~ILn~W~~fL~sp~S~~vL~ 123 (141)
T PF12588_consen 69 VGLVGFPMNAILDWPMGTPSGYAFFLDPDVNAQLKKILNEWGEFLSSPASRSVLN 123 (141)
T ss_pred CCccccChHHHHHhhccChHHHHHHcCHHHHHHHHHHHHHHHHHcCChhhhcccc
Confidence 456678999999888874 78999999999999999999999999998653
No 161
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.94 E-value=0.00059 Score=84.43 Aligned_cols=57 Identities=12% Similarity=0.234 Sum_probs=49.1
Q ss_pred ccceeEEEEEEeecc----cccCCceEEEEEcccc-eEeeeecCCCCCCCchhhHHHHHhcC
Q 008959 50 EDFAGIALLTLISAE----MKFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETN 106 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~----~~~~dd~~~~v~~g~~-~frT~vi~~tLnP~Wne~~kll~e~~ 106 (547)
+...|.|+|+|++|+ ..+++|||+++.+|++ .-||++++++.||+||+.+...++..
T Consensus 1976 ~~~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p 2037 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSP 2037 (2102)
T ss_pred hhCCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCC
Confidence 678999999999995 3467899999999977 78999999999999999777766443
No 162
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.94 E-value=0.00087 Score=61.67 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=41.8
Q ss_pred ceeEEEEEEeecc-c------ccCCceEEEEEccc-----ceEeeeecCCCCCCCchhhHHHHH
Q 008959 52 FAGIALLTLISAE-M------KFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 52 ~~gi~~i~~~~A~-~------~~~dd~~~~v~~g~-----~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
-.|.|.|+|++|+ + .+..||||.+.+.. ..-||++.++++||+|||.+..-+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v 90 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDV 90 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEE
Confidence 4699999999994 2 24579999999843 267999999999999999665544
No 163
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.92 E-value=0.0016 Score=54.50 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=45.6
Q ss_pred HHHHHHhhCCC--CCchh----HHHHhhhcCCCCCC----hHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008959 122 DSEVFDLLDPS--SSNKI----VGKISLSCSVEDPI----ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 185 (547)
Q Consensus 122 l~~~F~~~D~d--~dG~I----l~~ll~~l~~~~~~----~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l 185 (547)
+..+|..|+.. .+|.| +..++.......++ +.+ +..+|+.+|.|++|.|+++||..++..+
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~---v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKA---IDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHH---HHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 67889999876 36777 66666432222232 444 9999999999999999999999998754
No 164
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=96.92 E-value=0.00046 Score=62.71 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=41.9
Q ss_pred ccceeEEEEEEeecc-c----ccCCceEEEEEccc-----ceEeeeecCCCCCCCchhhHHHHH
Q 008959 50 EDFAGIALLTLISAE-M----KFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~-~----~~~dd~~~~v~~g~-----~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+...+-|.|+|++|+ + ....||||.+.+.. +..||++.++++||+|||.+..-+
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i 74 (137)
T cd08409 11 NPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKV 74 (137)
T ss_pred CCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEEC
Confidence 455678999999995 2 35589999998754 366999999999999999554433
No 165
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=96.90 E-value=0.00086 Score=59.53 Aligned_cols=49 Identities=29% Similarity=0.341 Sum_probs=40.9
Q ss_pred EEEEEEeecc------cccCCceEEEEEccc-ceEeeeecC-CCCCCCchhhHHHHH
Q 008959 55 IALLTLISAE------MKFKDKWLACVSLGE-QTCRTAISD-NTDKPIWNSEKKLLL 103 (547)
Q Consensus 55 i~~i~~~~A~------~~~~dd~~~~v~~g~-~~frT~vi~-~tLnP~Wne~~kll~ 103 (547)
.|+|+|++|+ ..++.||||++.++. +.++|++.. .+.+|.||+.+.+.+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v 57 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPL 57 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEc
Confidence 3789999995 357899999999988 999999985 589999999655544
No 166
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=96.89 E-value=0.0012 Score=58.37 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=42.2
Q ss_pred cccceeEEEEEEeecc-------cccCCceEEEEEcc-----cceEeeeecCCCCCCCchhhHHH
Q 008959 49 EEDFAGIALLTLISAE-------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 49 ~~~~~gi~~i~~~~A~-------~~~~dd~~~~v~~g-----~~~frT~vi~~tLnP~Wne~~kl 101 (547)
-+.-.|.|.|+|++|+ ..+..|||+.+.+. ....||++.+++++|+|||.+..
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f 73 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEE
Confidence 3566789999999994 24678999998773 14689999999999999995544
No 167
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=96.87 E-value=0.0013 Score=58.16 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=42.5
Q ss_pred cccceeEEEEEEeecc-------cccCCceEEEEEc---ccceEeeeecCCCCCCCchhhHHH
Q 008959 49 EEDFAGIALLTLISAE-------MKFKDKWLACVSL---GEQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 49 ~~~~~gi~~i~~~~A~-------~~~~dd~~~~v~~---g~~~frT~vi~~tLnP~Wne~~kl 101 (547)
-+.-.+.|.|+|++|+ ..+..|||+.+.+ +.+..||++++++++|+|||.+..
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f 71 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVF 71 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEE
Confidence 3556788999999994 2456799999887 456789999999999999995443
No 168
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=96.77 E-value=0.00066 Score=54.96 Aligned_cols=48 Identities=29% Similarity=0.378 Sum_probs=41.5
Q ss_pred EEEEEeecc------cccCCceEEEEEccc---ceEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLGE---QTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g~---~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|.|+|++|+ ...+.+||+.+.++. ..++|++..++.+|.||+.+.+.+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~ 57 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPL 57 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeee
Confidence 689999995 456888999999999 889999999999999999666654
No 169
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=96.76 E-value=0.0015 Score=58.92 Aligned_cols=52 Identities=27% Similarity=0.196 Sum_probs=41.7
Q ss_pred ccceeEEEEEEeecc------cccCCceEEEEEccc-----ceEeeeecCCCCCCCchhhHHH
Q 008959 50 EDFAGIALLTLISAE------MKFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g~-----~~frT~vi~~tLnP~Wne~~kl 101 (547)
....|.|+|+|++|+ ..++.|||+.+.++. +..||++++++++|+||+.+..
T Consensus 10 ~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f 72 (134)
T cd08403 10 LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVF 72 (134)
T ss_pred cCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEE
Confidence 445789999999995 356789999998742 3679999999999999995443
No 170
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=96.70 E-value=0.002 Score=57.07 Aligned_cols=54 Identities=17% Similarity=0.053 Sum_probs=42.7
Q ss_pred ccccceeEEEEEEeecc------cccCCceEEEEEcc-----cceEeeeecCCCCCCCchhhHHH
Q 008959 48 NEEDFAGIALLTLISAE------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 48 ~~~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g-----~~~frT~vi~~tLnP~Wne~~kl 101 (547)
.-+...+.|+|+|++|+ .....|||+.+.+. .+..||++++++++|+||+.+..
T Consensus 9 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f 73 (123)
T cd04035 9 LYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTY 73 (123)
T ss_pred EEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEE
Confidence 33556688999999995 24577899988862 35789999999999999995543
No 171
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=96.69 E-value=0.0016 Score=58.79 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=41.2
Q ss_pred ccceeEEEEEEeecc------cccCCceEEEEEcc--c---ceEeeeecCCCCCCCchhhHHHH
Q 008959 50 EDFAGIALLTLISAE------MKFKDKWLACVSLG--E---QTCRTAISDNTDKPIWNSEKKLL 102 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g--~---~~frT~vi~~tLnP~Wne~~kll 102 (547)
+...+.|.|+|++|+ ..+..|||+.+.+. . ...||+++++++||+|||.+..-
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~ 74 (136)
T cd08404 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD 74 (136)
T ss_pred eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE
Confidence 445678999999995 35678999999873 2 25789999999999999955443
No 172
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=96.61 E-value=0.002 Score=57.66 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=41.5
Q ss_pred eEEEEEEeecc------cccCCceEEEEEcc-----cceEeeeecCCCCCCCchhhHHHHH
Q 008959 54 GIALLTLISAE------MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 54 gi~~i~~~~A~------~~~~dd~~~~v~~g-----~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|.|+|+|++|+ .....|||+.+.++ .+.+||++++++++|.||+.+..-+
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~ 73 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDL 73 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeC
Confidence 88999999995 23468999999986 3789999999999999999655543
No 173
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=96.61 E-value=0.0014 Score=59.54 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=40.2
Q ss_pred EEEEEeecc----c-ccCCceEEEEEcc----cceEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE----M-KFKDKWLACVSLG----EQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~----~-~~~dd~~~~v~~g----~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|+|+|++|+ + .++.|||+.+.++ .+..||++++++++|+||+.+..-+
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~ 57 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFEL 57 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEc
Confidence 578899995 2 4688999999999 8999999999999999999544433
No 174
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=96.57 E-value=0.0026 Score=57.94 Aligned_cols=48 Identities=29% Similarity=0.436 Sum_probs=38.6
Q ss_pred EEEEEeecc-----cccCCceEEEEEcc-------------cceEeeeecCCCCCCCc-hhhHHHHH
Q 008959 56 ALLTLISAE-----MKFKDKWLACVSLG-------------EQTCRTAISDNTDKPIW-NSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~-----~~~~dd~~~~v~~g-------------~~~frT~vi~~tLnP~W-ne~~kll~ 103 (547)
..|.+++|+ +.++.|||+.+.+. .+..||+++++++||+| ||.+...+
T Consensus 3 ~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v 69 (137)
T cd08691 3 FSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVG 69 (137)
T ss_pred EEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEc
Confidence 457788884 35789999999884 25799999999999999 99666655
No 175
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.53 E-value=0.0019 Score=57.60 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=34.1
Q ss_pred cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHH
Q 008959 65 MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 65 ~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
..++.|||+++.++.+..||++++++++|+||+.+...+
T Consensus 11 ~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~ 49 (127)
T cd08373 11 LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPL 49 (127)
T ss_pred cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEe
Confidence 456899999999999999999999999999999655544
No 176
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=96.50 E-value=0.002 Score=57.59 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=43.5
Q ss_pred cccceeEEEEEEeecc------cccCCceEEEEEcc------cceEeeeecCCCCCCCchhhHHHHH
Q 008959 49 EEDFAGIALLTLISAE------MKFKDKWLACVSLG------EQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 49 ~~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g------~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
=+.-.|.|.|+|++|+ ..+..|||+.+.+= ...+||++.++++||+|||.+..-+
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v 75 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPI 75 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEEC
Confidence 3666789999999995 25678999888842 3589999999999999999655443
No 177
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.004 Score=65.41 Aligned_cols=101 Identities=18% Similarity=0.315 Sum_probs=69.0
Q ss_pred hHH-HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc--------
Q 008959 119 SDA-DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-------- 185 (547)
Q Consensus 119 ~~e-l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l-------- 185 (547)
+.+ ++..|..+|+...|.| |.+++..... -..+.....+++.-+.++.+ +-.||++||.+...-+
T Consensus 316 q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~-~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~ 393 (489)
T KOG2643|consen 316 QEEILELEFERFDKGDSGAISEVDFAELLLAYAG-VNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDI 393 (489)
T ss_pred HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcc-cchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHH
Confidence 444 6778999999988988 6665554432 22333344577777777766 4568888888765422
Q ss_pred --------CCcchHH-----------------HHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 186 --------GNQVAAN-----------------KKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 186 --------g~~~~~e-----------------el~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
|..++.. -++-+|..||.|+||.|+.+||..+|++-
T Consensus 394 Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 394 ALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 1122222 23446888999999999999999999874
No 178
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=96.46 E-value=0.013 Score=55.54 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=66.4
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCcchH-HHHH
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVAA-NKKE 195 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~-lg~~~~~-eel~ 195 (547)
...+|..||.|.||.| ++.++..++. +.+..- ++.+.+.+|.|.||+|+|.||.-++.. ....+.. ..+.
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga-pQTHL~---lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~ 176 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGA-PQTHLG---LKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLL 176 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCC-chhhHH---HHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHH
Confidence 7789999999999999 5566777775 333333 899999999999999999999998876 2223333 3333
Q ss_pred HHH--HHhcCCCCCCcCHHHHHHHH
Q 008959 196 ELF--KAADKNGDGVVSVDELAALL 218 (547)
Q Consensus 196 ~~F--~~~D~d~dG~Is~~Ef~~~l 218 (547)
.+= ...|....|.--...|-+.-
T Consensus 177 ~LAr~~eVDVskeGV~GAknFFeAK 201 (244)
T KOG0041|consen 177 RLARLSEVDVSKEGVSGAKNFFEAK 201 (244)
T ss_pred HHHHhcccchhhhhhhhHHHHHHHH
Confidence 332 33677777777666665543
No 179
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.44 E-value=0.0038 Score=66.01 Aligned_cols=95 Identities=23% Similarity=0.313 Sum_probs=72.7
Q ss_pred HHhhCCCCCchhHHHHhhhcCCCCCChHHHHHHHHHHH----hhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHh
Q 008959 126 FDLLDPSSSNKIVGKISLSCSVEDPIETEKSFARRILS----IVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAA 201 (547)
Q Consensus 126 F~~~D~d~dG~Il~~ll~~l~~~~~~~~e~~~l~~~f~----~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~ 201 (547)
|-.+|.|.||.+-++-+..-+....+ ..+++++|. .+=.-.+|++++++|..++.++....+..-++-.|+.+
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~tlt---~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrcl 360 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDHTLT---ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCL 360 (493)
T ss_pred HhhhccccccccCHHHHHHHhccchh---hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeee
Confidence 55779999998833333322222333 234888998 34445789999999999999887777888899999999
Q ss_pred cCCCCCCcCHHHHHHHHHhhhc
Q 008959 202 DKNGDGVVSVDELAALLALQQE 223 (547)
Q Consensus 202 D~d~dG~Is~~Ef~~~l~~l~~ 223 (547)
|.+++|.|+.+|+.-+......
T Consensus 361 Dld~~G~Lt~~el~~fyeeq~~ 382 (493)
T KOG2562|consen 361 DLDGDGILTLNELRYFYEEQLQ 382 (493)
T ss_pred eccCCCcccHHHHHHHHHHHHH
Confidence 9999999999999988877543
No 180
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.43 E-value=0.0025 Score=56.77 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=40.3
Q ss_pred cccceeEEEEEEeecc------cccCCceEEEEE---cccceEeeeecCCCCCCCchhhHHH
Q 008959 49 EEDFAGIALLTLISAE------MKFKDKWLACVS---LGEQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 49 ~~~~~gi~~i~~~~A~------~~~~dd~~~~v~---~g~~~frT~vi~~tLnP~Wne~~kl 101 (547)
=+...+.|.|+|++|+ .++.+|||+.+. ...+..||++.+. +||+|||.+..
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f 71 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTF 71 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEE
Confidence 3566788999999995 357788886643 3457899999888 99999995555
No 181
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.40 E-value=0.0017 Score=57.07 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHH
Q 008959 155 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAA 216 (547)
Q Consensus 155 ~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~ 216 (547)
...+.-.|..+|.|+||.|+..|+..+...+ ...+.-++.+|+..|.|+||.||..|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3447888999999999999999999886654 24445688899999999999999999864
No 182
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.0027 Score=66.61 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=48.5
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhc------CC--------cch-HHHHHHHH--HHhcCCCCCCcCHHHHHHHHHh
Q 008959 158 ARRILSIVDYNQDGQLSFKEFSDLISAF------GN--------QVA-ANKKEELF--KAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 158 l~~~f~~~D~d~dG~Is~~Ef~~~l~~l------g~--------~~~-~eel~~~F--~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
.+-+|++||.|+||.|+.+||..+++-+ |. ..+ .-++...+ .-|.++++++++++||.++++.
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 6789999999999999999999887432 11 000 01222222 3479999999999999999998
Q ss_pred hhcc
Q 008959 221 QQEK 224 (547)
Q Consensus 221 l~~~ 224 (547)
+.+.
T Consensus 315 Lq~E 318 (489)
T KOG2643|consen 315 LQEE 318 (489)
T ss_pred HHHH
Confidence 8653
No 183
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=96.22 E-value=0.0025 Score=56.28 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=30.5
Q ss_pred ccCCceEEEEEcccce-------EeeeecCCCCCCCchhhHHH
Q 008959 66 KFKDKWLACVSLGEQT-------CRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 66 ~~~dd~~~~v~~g~~~-------frT~vi~~tLnP~Wne~~kl 101 (547)
.++.|||+.+.++... .||++++++++|+||+.+..
T Consensus 18 ~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f 60 (120)
T cd04048 18 LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTV 60 (120)
T ss_pred CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEE
Confidence 4678999999998764 99999999999999995444
No 184
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=96.08 E-value=0.005 Score=54.56 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=38.7
Q ss_pred EEEEEEeecc-c-------ccCCceEEEEEc------ccceEeeeecCCCC-CCCchhhHHHHH
Q 008959 55 IALLTLISAE-M-------KFKDKWLACVSL------GEQTCRTAISDNTD-KPIWNSEKKLLL 103 (547)
Q Consensus 55 i~~i~~~~A~-~-------~~~dd~~~~v~~------g~~~frT~vi~~tL-nP~Wne~~kll~ 103 (547)
.|+|+|++|+ + .++.|||+.+.+ +.+.+||+++.++. +|+|||.+....
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~ 66 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDV 66 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEE
Confidence 4789999995 1 457899999998 56789999988775 999999554443
No 185
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=96.08 E-value=0.0075 Score=56.02 Aligned_cols=50 Identities=14% Similarity=0.016 Sum_probs=37.5
Q ss_pred eEEEEEEeecc------cccCCceEEEEEc-----ccceEeeeecCCCCCCCchhhHHHHH
Q 008959 54 GIALLTLISAE------MKFKDKWLACVSL-----GEQTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 54 gi~~i~~~~A~------~~~~dd~~~~v~~-----g~~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
|-|.|..+.+. -.++.|||+.+.+ +.+..||+++++|+||+|||.+.+.+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I 64 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNI 64 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEe
Confidence 44555555552 2667899999975 56899999999999999999655433
No 186
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.06 E-value=0.014 Score=50.53 Aligned_cols=62 Identities=23% Similarity=0.420 Sum_probs=45.8
Q ss_pred cccChHH-HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 008959 115 VFEDSDA-DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLIS 183 (547)
Q Consensus 115 l~e~~~e-l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~ 183 (547)
+++.+.+ ...+|+.+|+ ++|.+ ...++... ....+. +..+|...|.|++|+++++||.-+|.
T Consensus 4 ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~---L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDV---LAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHH---HHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHH---HHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 3445555 8999999886 57888 33444433 344555 99999999999999999999999885
No 187
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=96.05 E-value=0.0056 Score=54.70 Aligned_cols=49 Identities=20% Similarity=0.121 Sum_probs=40.2
Q ss_pred ceeEEEEEEeecc------cccCCceEEEEEcccc-----eEeeeecCCCCCCCchhhHH
Q 008959 52 FAGIALLTLISAE------MKFKDKWLACVSLGEQ-----TCRTAISDNTDKPIWNSEKK 100 (547)
Q Consensus 52 ~~gi~~i~~~~A~------~~~~dd~~~~v~~g~~-----~frT~vi~~tLnP~Wne~~k 100 (547)
-.|.|.|.|++|+ .....|||+.+.+... ..||++++++.+|.||+.+.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~ 71 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFS 71 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEE
Confidence 3578999999995 2557899999988653 77999999999999999543
No 188
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.68 E-value=0.012 Score=36.56 Aligned_cols=26 Identities=38% Similarity=0.678 Sum_probs=13.6
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHH
Q 008959 194 KEELFKAADKNGDGVVSVDELAALLA 219 (547)
Q Consensus 194 l~~~F~~~D~d~dG~Is~~Ef~~~l~ 219 (547)
++.+|+.+|.+++|.|+++||..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34455555555555555555555543
No 189
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=95.64 E-value=0.018 Score=49.74 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=27.0
Q ss_pred ccCCceEEEEEcccc------eEeeeecCCCCCCCchh
Q 008959 66 KFKDKWLACVSLGEQ------TCRTAISDNTDKPIWNS 97 (547)
Q Consensus 66 ~~~dd~~~~v~~g~~------~frT~vi~~tLnP~Wne 97 (547)
.++.|||+++..+.. .+||+++++++||+||+
T Consensus 18 ~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn~ 55 (110)
T cd04047 18 FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP 55 (110)
T ss_pred CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceEE
Confidence 457899999887543 69999999999999994
No 190
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.56 E-value=0.041 Score=65.29 Aligned_cols=72 Identities=21% Similarity=0.372 Sum_probs=62.9
Q ss_pred CChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcc--hHH-----HHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 150 PIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQV--AAN-----KKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 150 ~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~--~~e-----el~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
.+++...++..+|+.||.+.+|.++..+|...|+.+|-.+ .++ ++++++...|++.+|+|+..|+.++|-..
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 4566667788999999999999999999999999988654 233 79999999999999999999999999664
No 191
>PLN03008 Phospholipase D delta
Probab=95.35 E-value=0.0097 Score=67.97 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=34.1
Q ss_pred ccCCceEEEEEcccc-eEeeeecCCCCCCCchhhHHHHH
Q 008959 66 KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 66 ~~~dd~~~~v~~g~~-~frT~vi~~tLnP~Wne~~kll~ 103 (547)
..++||||+|.+|++ ..||+++++++||+|||.+.+.+
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~v 112 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISI 112 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEe
Confidence 578899999999987 67999999999999999877766
No 192
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.041 Score=47.73 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=45.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhc------CC----cchHHHHHHHHH----HhcCCCCCCcCHHHHHHH
Q 008959 160 RILSIVDYNQDGQLSFKEFSDLISAF------GN----QVAANKKEELFK----AADKNGDGVVSVDELAAL 217 (547)
Q Consensus 160 ~~f~~~D~d~dG~Is~~Ef~~~l~~l------g~----~~~~eel~~~F~----~~D~d~dG~Is~~Ef~~~ 217 (547)
-.|++.|.|++|.|+=-|+..++... |. -.++.+++.++. .-|.|+||+|+|.||...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 47999999999999999999998753 22 135566666554 458899999999999764
No 193
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.30 E-value=0.03 Score=59.68 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=42.2
Q ss_pred HHHHHHhhCCCCCchh-HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 008959 122 DSEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 184 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~ 184 (547)
+..+|..+|.|+||.| ..+++. ...+|+.+|.|+||.|+++||..++..
T Consensus 336 l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 336 AQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 7889999999999998 555531 467899999999999999999998864
No 194
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=95.18 E-value=0.053 Score=53.00 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=69.7
Q ss_pred HHHHHHhhCCCCCchh-HHHHhhh-------cCCCCCChHH-HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHH
Q 008959 122 DSEVFDLLDPSSSNKI-VGKISLS-------CSVEDPIETE-KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAAN 192 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~~ll~~-------l~~~~~~~~e-~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~e 192 (547)
++++...+|+|+|..+ ..++..- ..+++....+ ....++.=..+|.|.||.++++|+..++..+.......
T Consensus 238 VkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~aln 317 (362)
T KOG4251|consen 238 VKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALN 317 (362)
T ss_pred HHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHH
Confidence 4667788999999887 3333221 1122222222 22344555678999999999999999987777677778
Q ss_pred HHHHHHHHhcCCCCCCcCHHHHHHH
Q 008959 193 KKEELFKAADKNGDGVVSVDELAAL 217 (547)
Q Consensus 193 el~~~F~~~D~d~dG~Is~~Ef~~~ 217 (547)
++..++...|.+++.+++.+|+.+-
T Consensus 318 e~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 318 EVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHHhhhccCCCcccCHHHHHHH
Confidence 8889999999999999999998763
No 195
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=95.03 E-value=0.023 Score=46.77 Aligned_cols=46 Identities=30% Similarity=0.368 Sum_probs=37.8
Q ss_pred EEEEEeecc------cccCCceEEEEEcccc---eEeeeecCCCCCCCchhhHHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLGEQ---TCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g~~---~frT~vi~~tLnP~Wne~~kl 101 (547)
+.|+|++|+ .....+||+.+.++.. ..+|+++.++.+|.||+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~ 56 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEF 56 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEE
Confidence 678999994 1246889999999885 899999999999999994433
No 196
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.97 E-value=0.03 Score=34.72 Aligned_cols=27 Identities=33% Similarity=0.724 Sum_probs=24.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHh
Q 008959 158 ARRILSIVDYNQDGQLSFKEFSDLISA 184 (547)
Q Consensus 158 l~~~f~~~D~d~dG~Is~~Ef~~~l~~ 184 (547)
++.+|+.+|.+++|.|++.||..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 678999999999999999999998864
No 197
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=94.86 E-value=0.11 Score=54.76 Aligned_cols=96 Identities=20% Similarity=0.260 Sum_probs=56.2
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHH-HHhhcCCCCCcccHHHHHHHHHhcC------Ccc-
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRI-LSIVDYNQDGQLSFKEFSDLISAFG------NQV- 189 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~-f~~~D~d~dG~Is~~Ef~~~l~~lg------~~~- 189 (547)
+...|+.+|+++.|++ ...++.....-... |+.+ =+....+.||.+.+.+..+.+..-+ ..+
T Consensus 466 L~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LP------Wr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slv 539 (631)
T KOG0377|consen 466 LEDEFRKYDPKKSGKLSISHWAKCMENITGLNLP------WRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLV 539 (631)
T ss_pred HHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCc------HHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHH
Confidence 5666777777777776 22344443332211 2211 1223344556666666555543211 001
Q ss_pred -----hHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008959 190 -----AANKKEELFKAADKNGDGVVSVDELAALLALQQE 223 (547)
Q Consensus 190 -----~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~ 223 (547)
....++.+|..+|.|++|.||.+||+++..-+..
T Consensus 540 etLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~s 578 (631)
T KOG0377|consen 540 ETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSS 578 (631)
T ss_pred HHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHh
Confidence 1124678899999999999999999998877654
No 198
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.79 E-value=0.1 Score=43.95 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhh-----cCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLS-----CSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 185 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~-----l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l 185 (547)
+..+|..|-.+ ++.+ +..++.. +.. ...+ ..+..+++.+|.|+||.|+|.||..++..+
T Consensus 10 lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~-~~d~---~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 10 MMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKN-QNDP---MAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcC-CCCH---HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 67788888733 3355 4444321 111 1122 348999999999999999999999998764
No 199
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=94.70 E-value=0.023 Score=66.38 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=42.8
Q ss_pred eeEEEEEEeecc------cccCCceEEEEEcccc-eEeeeecCCCCCCCchhhHHHHH
Q 008959 53 AGIALLTLISAE------MKFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 53 ~gi~~i~~~~A~------~~~~dd~~~~v~~g~~-~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+|=|.|.+.+|+ ..+.+|||+++.+.++ .|||++.+++|||+|||.+..-+
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v 1096 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEV 1096 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEee
Confidence 688888888884 5777888888888887 99999999999999999555444
No 200
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=94.51 E-value=0.067 Score=52.31 Aligned_cols=66 Identities=32% Similarity=0.372 Sum_probs=50.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCcc--hHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 156 SFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQV--AANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 156 ~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~-lg~~~--~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
+.+..+|+..|.|.||+|+-.|+++.+.. ..+-+ .-++-+-.|+..|.|+||.|+++||.--+...
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 34889999999999999999999997765 22211 12344556888999999999999998755444
No 201
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=94.34 E-value=0.042 Score=49.79 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=38.9
Q ss_pred ccccceeEEEEEEeecc-c-----ccCCceEEEEEcc---c--ceEeeeecCCCC-CCCchhhHHH
Q 008959 48 NEEDFAGIALLTLISAE-M-----KFKDKWLACVSLG---E--QTCRTAISDNTD-KPIWNSEKKL 101 (547)
Q Consensus 48 ~~~~~~gi~~i~~~~A~-~-----~~~dd~~~~v~~g---~--~~frT~vi~~tL-nP~Wne~~kl 101 (547)
+=-...|.|.|.|++|+ + ....||||.+.+- . ..-||++.++++ +|+|||.+-.
T Consensus 8 ~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~F 73 (135)
T cd08692 8 CFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIF 73 (135)
T ss_pred eecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEE
Confidence 33566789999999995 2 3444679887553 2 367888999996 6999994433
No 202
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=0.039 Score=60.39 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=49.3
Q ss_pred eeEEEEEEeecc------cccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHHhcCCCc-ccceecccChHH
Q 008959 53 AGIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPH-VARISVFEDSDA 121 (547)
Q Consensus 53 ~gi~~i~~~~A~------~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~e~~~~~-~~~isl~e~~~e 121 (547)
...+.|+|+-|+ -.+++|||+-..+|+..=||+.|-.+|||+||| +.-+|..+.. ..++-++++++.
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~e--kfhfechnstdrikvrvwded~d 367 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNE--KFHFECHNSTDRIKVRVWDEDND 367 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhh--heeeeecCCCceeEEEEecCccc
Confidence 345667777774 478999999999999999999999999999999 4444333332 234455666555
No 203
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=94.25 E-value=0.14 Score=54.74 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=32.4
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 172 QLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 172 ~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
.+++.||.+++.. ...|..+++|+..|+.++|.||.-+|..+|...
T Consensus 163 ~~ny~~f~Q~lh~----~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 163 HLNYAEFTQFLHE----FQLEHAEQAFREKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred hccHHHHHHHHHH----HHHHHHHHHHHHhcccCCCeeeeechHhhhhhh
Confidence 3444444444433 334557788999999999999998888888764
No 204
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=94.09 E-value=0.071 Score=43.41 Aligned_cols=48 Identities=31% Similarity=0.423 Sum_probs=38.6
Q ss_pred EEEEEeecc------cccCCceEEEEEccc-ceEeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g~-~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
+.|+|++|+ .....++|+.+.+.. +.++|+++..+++|.||+.+..-.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~ 55 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPV 55 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEc
Confidence 457888884 345788999999988 999999999999999999544433
No 205
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.73 E-value=0.027 Score=59.24 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=44.4
Q ss_pred eEEEEEEeecc----c--ccCCceEEEEEc-----ccceEeeeecCCCCCCCchhhHHHHH-hcCCCcccceecccC
Q 008959 54 GIALLTLISAE----M--KFKDKWLACVSL-----GEQTCRTAISDNTDKPIWNSEKKLLL-ETNGPHVARISVFED 118 (547)
Q Consensus 54 gi~~i~~~~A~----~--~~~dd~~~~v~~-----g~~~frT~vi~~tLnP~Wne~~kll~-e~~~~~~~~isl~e~ 118 (547)
..|.|.|.+|+ | .+-+|||+.+.+ +...-||++|+.+|||+|||++..-+ ..+.+....+.+|+|
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 45778888885 3 666777777764 44567889999999999999765433 233333445555666
No 206
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=93.23 E-value=0.44 Score=51.15 Aligned_cols=54 Identities=30% Similarity=0.473 Sum_probs=24.4
Q ss_pred hcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008959 165 VDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 165 ~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
.|.-+||-|+++||+.+=.-+- .++...+.+|+.||+.++|.+|++++.+++.+
T Consensus 83 aD~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred hhhcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 3444555555555544322111 12333344455555555555555555555444
No 207
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.16 E-value=0.17 Score=41.58 Aligned_cols=62 Identities=13% Similarity=0.304 Sum_probs=51.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHh-cCC-cchHHHHHHHHHHhcCC----CCCCcCHHHHHHHHHh
Q 008959 158 ARRILSIVDYNQDGQLSFKEFSDLISA-FGN-QVAANKKEELFKAADKN----GDGVVSVDELAALLAL 220 (547)
Q Consensus 158 l~~~f~~~D~d~dG~Is~~Ef~~~l~~-lg~-~~~~eel~~~F~~~D~d----~dG~Is~~Ef~~~l~~ 220 (547)
++.+|..+-. +.+.|+.++|...|.. .+. ..+.+++++++..+..+ ..+.+|+++|..+|..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 7889999955 7899999999999977 444 46889999999998655 4789999999999955
No 208
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=93.08 E-value=0.11 Score=45.62 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=35.3
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSD 180 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~ 180 (547)
+.=.|..+|.|+||.+ +..+...+ .+.+.- ++..|+..|.|+||.||+.|+..
T Consensus 56 ~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C---~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 56 VHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHC---ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGG---HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHH---HHHHHHHcCCCCCCCCCHHHHcc
Confidence 6778999999999998 33333323 233434 67889999999999999999864
No 209
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=92.89 E-value=0.23 Score=37.01 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=30.8
Q ss_pred HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008959 138 VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 185 (547)
Q Consensus 138 l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l 185 (547)
+..+++.++. ..++.. +..+|+..|.+++|.+..+||..++..+
T Consensus 7 vk~lLk~~NI-~~~~~y---A~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 7 VKKLLKMMNI-EMDDEY---ARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHTT-----HHH---HHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHcc-CcCHHH---HHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 3445565654 344444 8889999999999999999999988653
No 210
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=92.40 E-value=0.094 Score=61.47 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=42.6
Q ss_pred ccceeEEEEEEeecc--------cccCCceEEEEEccc-ceEeeeecCCCCCCCchhhHHHHH
Q 008959 50 EDFAGIALLTLISAE--------MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~--------~~~~dd~~~~v~~g~-~~frT~vi~~tLnP~Wne~~kll~ 103 (547)
-..+|||-|+|.+|+ +..+-|||..+.+.. -.=||++.++++||+|||++-+++
T Consensus 432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~l 494 (1227)
T COG5038 432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILL 494 (1227)
T ss_pred CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEe
Confidence 356899999999995 477778887777322 233999999999999999877666
No 211
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=91.58 E-value=1.1 Score=50.89 Aligned_cols=93 Identities=23% Similarity=0.274 Sum_probs=73.1
Q ss_pred HHHHHHhhCCCCCchh-HH---HHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI-VG---KISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEEL 197 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~---~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~ 197 (547)
+..+|+..|.+++|.+ +. .++..+.. .... ..++.+|+..|..++|++...++..+...+.... ++..+
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l~~---~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~ 210 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQLNV-QLSE---SKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFL 210 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHH-hhhH---HHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHH
Confidence 8899999999999998 33 34444432 2222 2378889999999999999999999988766443 88888
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhhh
Q 008959 198 FKAADKNGDGVVSVDELAALLALQQ 222 (547)
Q Consensus 198 F~~~D~d~dG~Is~~Ef~~~l~~l~ 222 (547)
|..+-.+ .++++.+++..++...+
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHHHHhc
Confidence 8887655 89999999999998874
No 212
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=91.25 E-value=0.19 Score=43.48 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=44.9
Q ss_pred EEEEEeecc---------cccCCceEEEEEcccc-eEeeeecCCCCCCCchhhHHHHHhcCCCcccceecccChHHHHHH
Q 008959 56 ALLTLISAE---------MKFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFEDSDADSEV 125 (547)
Q Consensus 56 ~~i~~~~A~---------~~~~dd~~~~v~~g~~-~frT~vi~~tLnP~Wne~~kll~e~~~~~~~~isl~e~~~el~~~ 125 (547)
|.|.|.+|+ ...+.++|+++.++.. ..||++. .||+||+.|..-++ ......+.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd--k~nEiel~----------- 64 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE--KNNEEEVI----------- 64 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec--CCcEEEEE-----------
Confidence 356666662 4778899999999999 8999885 79999996655552 23333333
Q ss_pred HHhhCCCCCchh
Q 008959 126 FDLLDPSSSNKI 137 (547)
Q Consensus 126 F~~~D~d~dG~I 137 (547)
.||..++-.+
T Consensus 65 --VyDk~~~~~~ 74 (109)
T cd08689 65 --VYDKGGDQPV 74 (109)
T ss_pred --EEeCCCCeec
Confidence 6777766654
No 213
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=90.53 E-value=0.44 Score=48.69 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=57.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008959 156 SFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 156 ~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~-lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
+.++.+|..||.+++|.+++.|-...+.- .+...+.+.++-+|+.|+.+.||.+.-.+|.-+++.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 34889999999999999999998877765 577788899999999999999999999988887755
No 214
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=90.33 E-value=0.9 Score=42.65 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008959 189 VAANKKEELFKAADKNGDGVVSVDELAALLALQQE 223 (547)
Q Consensus 189 ~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~ 223 (547)
..++..+++|..+++.+.+.+|..|+.++++...+
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 45568999999999999999999999999976443
No 215
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=90.18 E-value=0.33 Score=56.11 Aligned_cols=78 Identities=15% Similarity=0.037 Sum_probs=58.0
Q ss_pred CCCCcccccccc-ccceeEEEEEEeecc------cccCCceEEEEEcccce--EeeeecCCCCCCCchhhHHHHHhcCCC
Q 008959 38 SGSHHHNRVLNE-EDFAGIALLTLISAE------MKFKDKWLACVSLGEQT--CRTAISDNTDKPIWNSEKKLLLETNGP 108 (547)
Q Consensus 38 ~~~~~~~~~~~~-~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g~~~--frT~vi~~tLnP~Wne~~kll~e~~~~ 108 (547)
++.+...+-+.+ +++--.+||.|++|- -.++.|||+++++|.+. -+++-+.+++||++++.+++-..-...
T Consensus 596 p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~e 675 (1105)
T KOG1326|consen 596 PAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFE 675 (1105)
T ss_pred CCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchh
Confidence 334455555555 599999999999992 48889999999999998 455679999999999977765533333
Q ss_pred cccceec
Q 008959 109 HVARISV 115 (547)
Q Consensus 109 ~~~~isl 115 (547)
+.-.+.+
T Consensus 676 k~l~v~v 682 (1105)
T KOG1326|consen 676 KDLIVEV 682 (1105)
T ss_pred hcceeEE
Confidence 3444443
No 216
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.18 E-value=0.88 Score=48.85 Aligned_cols=71 Identities=13% Similarity=0.273 Sum_probs=59.2
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 149 DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 149 ~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
..++++.+....-|+.+..|-.|+|+=.--..++.. ..++-+|+..+++..|.|.||-++++||+..|.-.
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 456777777888899999999999998766666654 34778899999999999999999999999988764
No 217
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=88.60 E-value=1 Score=48.29 Aligned_cols=91 Identities=10% Similarity=0.191 Sum_probs=64.4
Q ss_pred HHHHHH----hhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc-------C
Q 008959 122 DSEVFD----LLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-------G 186 (547)
Q Consensus 122 l~~~F~----~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l-------g 186 (547)
+.++|+ .+-.-.+|.+ +-.++.++.. ..+..- ++-.|+.+|.+++|.|+..|+..+.... +
T Consensus 313 vdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~-k~t~~S---leYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~ 388 (493)
T KOG2562|consen 313 VDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED-KDTPAS---LEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMG 388 (493)
T ss_pred HHHHHhhccccceeeecCcccHHHHHHHHHHhcc-CCCccc---hhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 567777 3334456777 4455566554 233333 7889999999999999999998877542 2
Q ss_pred -Ccch-HHHHHHHHHHhcCCCCCCcCHHHHHH
Q 008959 187 -NQVA-ANKKEELFKAADKNGDGVVSVDELAA 216 (547)
Q Consensus 187 -~~~~-~eel~~~F~~~D~d~dG~Is~~Ef~~ 216 (547)
+.++ ++-+.+++........++||..+|..
T Consensus 389 ~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 389 QEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 1222 34567888888888899999999987
No 218
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.88 E-value=0.48 Score=51.24 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=40.6
Q ss_pred ccceeEEEEEEeecc------cccCCceEEEEEccc---ceEeeeecCCCCCCCchhhHHHH
Q 008959 50 EDFAGIALLTLISAE------MKFKDKWLACVSLGE---QTCRTAISDNTDKPIWNSEKKLL 102 (547)
Q Consensus 50 ~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g~---~~frT~vi~~tLnP~Wne~~kll 102 (547)
|-=..-|.|+|++|. .++.+|||+.+.+-. ..++|++.++++||+|||.+..-
T Consensus 163 d~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~ 224 (421)
T KOG1028|consen 163 DFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFE 224 (421)
T ss_pred cccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEee
Confidence 444567889999994 245578998877654 57999999999999999955443
No 219
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=87.40 E-value=0.9 Score=46.79 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=53.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhh
Q 008959 158 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQ 222 (547)
Q Consensus 158 l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~ 222 (547)
+.-||..+|.|.||.++..|+..+-.. -.+.-++.+|...|...||.|+-+|+...+...+
T Consensus 252 ~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 252 LGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 889999999999999999999887632 4556789999999999999999999999986643
No 220
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=86.38 E-value=1.4 Score=47.97 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=47.3
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG 186 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg 186 (547)
+++.|...| |++|++ +..++...+.-. .....++++.++...+.|.+|.|+|+||..++..+.
T Consensus 21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 21 LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHhhc-CCCCeeehHHhHHHHHHhcccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 889999999 999998 555555544311 111223389999999999999999999999876643
No 221
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=85.52 E-value=0.57 Score=47.87 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=52.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcC-CcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008959 157 FARRILSIVDYNQDGQLSFKEFSDLISAFG-NQVAANKKEELFKAADKNGDGVVSVDELAALLALQQE 223 (547)
Q Consensus 157 ~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg-~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~ 223 (547)
.+.-.|..+|.|.++.|...|+..+=.-+- ......-.+.+|+..|.|+|-.||++|++..+....+
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 466789999999999999999665443322 2234456788999999999999999999998866544
No 222
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=85.12 E-value=4.9 Score=37.80 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCc-------chHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008959 156 SFARRILSIVDYNQDGQLSFKEFSDLISAFGNQ-------VAANKKEELFKAADKNGDGVVSVDELAALL 218 (547)
Q Consensus 156 ~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~-------~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l 218 (547)
+.++++|..++..+.+.+++.|+..|+..-... -..-|...++.. -.|.||.+..|+++.+.
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L-~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYIL-AKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHH-HcCcCCcEeHHHHhhhc
Confidence 448899999999999999999999999763221 122344444444 46779999999998876
No 223
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=84.29 E-value=2.7 Score=47.73 Aligned_cols=72 Identities=24% Similarity=0.426 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008959 152 ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQE 223 (547)
Q Consensus 152 ~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~ 223 (547)
......+..+|+..|++.+|.+++.|...++..+...+.+..+..+|+..|..+++.+..+++.++......
T Consensus 132 ~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~ 203 (746)
T KOG0169|consen 132 SRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK 203 (746)
T ss_pred chHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc
Confidence 344456889999999999999999999999999988899999999999999889999999999988877643
No 224
>PLN02223 phosphoinositide phospholipase C
Probab=83.99 E-value=1 Score=49.77 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=36.7
Q ss_pred eeEEEEEEeeccc---c--------cCCceEEEEEccc-----ceEeeeecCCCCCCCchhhHHH
Q 008959 53 AGIALLTLISAEM---K--------FKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 53 ~gi~~i~~~~A~~---~--------~~dd~~~~v~~g~-----~~frT~vi~~tLnP~Wne~~kl 101 (547)
..+|.|+|++|+. . ...|||+.|.+.+ ...||.+..++.||+||+.++.
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F 472 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTF 472 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEE
Confidence 4679999999962 1 2346888887654 3568888899999999996544
No 225
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=83.16 E-value=2.5 Score=46.54 Aligned_cols=75 Identities=12% Similarity=0.173 Sum_probs=66.2
Q ss_pred CChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhcc
Q 008959 150 PIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEK 224 (547)
Q Consensus 150 ~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~ 224 (547)
.+.++....+..|..+|.|+.|.++..+...+|.+.+...+++.+.+..+..|.+-+|++...||.+++......
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 345666667789999999999999999999999998888999999999999999999999999999999776543
No 226
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=82.38 E-value=5.6 Score=44.17 Aligned_cols=103 Identities=17% Similarity=0.280 Sum_probs=64.7
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCC--CCcccHHHHHHHHHh-----------
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQ--DGQLSFKEFSDLISA----------- 184 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~--dG~Is~~Ef~~~l~~----------- 184 (547)
+.++|.+.|.|.||.+ +..+...+-..+.+..+.+.++...+..-.+| ++.++..-|+.+-..
T Consensus 197 l~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW 276 (625)
T KOG1707|consen 197 LKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHETTW 276 (625)
T ss_pred HHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccchh
Confidence 7889999999999987 55555555544555555444444444333332 334455445443221
Q ss_pred -----cCC-----------------------cchH---HHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhcc
Q 008959 185 -----FGN-----------------------QVAA---NKKEELFKAADKNGDGVVSVDELAALLALQQEK 224 (547)
Q Consensus 185 -----lg~-----------------------~~~~---eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~ 224 (547)
.|. .++. +-+..+|..+|.|+||.++-.||..++...+..
T Consensus 277 ~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~ 347 (625)
T KOG1707|consen 277 TILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGS 347 (625)
T ss_pred hhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCC
Confidence 111 0111 236788999999999999999999999887654
No 227
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.33 E-value=1.9 Score=48.81 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008959 158 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 218 (547)
Q Consensus 158 l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l 218 (547)
.+.+|..+|+..+|+++=..=..+|...+ ++...+..++..-|.|+||.++.+||.-.|
T Consensus 197 Y~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred HHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 45556666666666666555555553322 555556666666666666666666665444
No 228
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.93 E-value=2.2 Score=45.96 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=47.9
Q ss_pred ccChHH-HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 008959 116 FEDSDA-DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 184 (547)
Q Consensus 116 ~e~~~e-l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~ 184 (547)
++++.+ +..-|....+|-.|.| -+.++.+- ...-+| +..+|++.|.|.||.+++.||..++.-
T Consensus 226 T~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS---klpi~E---LshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 226 TPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS---KLPIEE---LSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred CHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc---cCchHH---HHHHHhhcccCccccccHHHHHhhHhh
Confidence 344555 7778999999999998 33344332 233455 899999999999999999999999865
No 229
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=80.36 E-value=3.3 Score=39.04 Aligned_cols=52 Identities=21% Similarity=0.482 Sum_probs=34.8
Q ss_pred ceeeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEE
Q 008959 414 EVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 488 (547)
Q Consensus 414 ~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~ 488 (547)
..+.||++|++....++.+. .| + ..++|+ |. ++ -|.+ +..+||++|+|..+.
T Consensus 21 ~~i~aP~~G~vi~L~~V~D~-vF-------s-~k~mGd---------Gv-AI---~P~~-~~v~AP~dG~V~~vf 72 (169)
T PRK09439 21 IEIIAPLSGEIVNIEDVPDV-VF-------A-EKIVGD---------GI-AI---KPTG-NKMVAPVDGTIGKIF 72 (169)
T ss_pred eEEEecCCeEEEEhHHCCCh-Hh-------c-ccCccc---------eE-EE---EccC-CEEEecCCeEEEEEc
Confidence 45789999999998887642 11 1 124443 22 22 3566 789999999997654
No 230
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=80.15 E-value=2.4 Score=43.11 Aligned_cols=60 Identities=22% Similarity=0.388 Sum_probs=44.5
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHh-c----CCcchHHHHH-----------HHHHHhcCCCCCCcCHHHHHHHH
Q 008959 159 RRILSIVDYNQDGQLSFKEFSDLISA-F----GNQVAANKKE-----------ELFKAADKNGDGVVSVDELAALL 218 (547)
Q Consensus 159 ~~~f~~~D~d~dG~Is~~Ef~~~l~~-l----g~~~~~eel~-----------~~F~~~D~d~dG~Is~~Ef~~~l 218 (547)
+-.|...|.|+||.++-.|+..++.. + .....+++++ .+++..|.|.|..||.+||...-
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 45688889999999999999988864 2 2222333332 34677899999999999998754
No 231
>PLN02952 phosphoinositide phospholipase C
Probab=77.83 E-value=2.1 Score=48.16 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=34.3
Q ss_pred eeEEEEEEeeccc---cc-----C----CceEEEEEc-c----cceEeeeecCCCCCCCchhhHH
Q 008959 53 AGIALLTLISAEM---KF-----K----DKWLACVSL-G----EQTCRTAISDNTDKPIWNSEKK 100 (547)
Q Consensus 53 ~gi~~i~~~~A~~---~~-----~----dd~~~~v~~-g----~~~frT~vi~~tLnP~Wne~~k 100 (547)
-..|.|+|++|+. .+ + .|||+.|.+ | ....||+++.++.||+||+.+.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~ 533 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFS 533 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeE
Confidence 4679999999952 11 1 155654443 4 3677999999999999999544
No 232
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.64 E-value=3.5 Score=36.06 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=38.2
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhh------cCCCC---CChHH-HHHHHHHHHhhcCCCCCcccHHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLS------CSVED---PIETE-KSFARRILSIVDYNQDGQLSFKEFSDL 181 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~------l~~~~---~~~~e-~~~l~~~f~~~D~d~dG~Is~~Ef~~~ 181 (547)
.--.|+..|.|+++.+ +.+++.. .+.++ +++.+ ...+..+++--|.|+||.|++.||...
T Consensus 69 qfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 69 QFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3457889999999988 2222111 12111 22333 234556777788999999999999864
No 233
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=76.47 E-value=3 Score=47.01 Aligned_cols=38 Identities=16% Similarity=0.414 Sum_probs=25.6
Q ss_pred eeecCCCCCCCchhhHHHHHhcCCCcccceecccChHH
Q 008959 84 TAISDNTDKPIWNSEKKLLLETNGPHVARISVFEDSDA 121 (547)
Q Consensus 84 T~vi~~tLnP~Wne~~kll~e~~~~~~~~isl~e~~~e 121 (547)
|.|-++||||+|+|.++.-++..+.-.--+.+|+.+++
T Consensus 181 tsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe 218 (1103)
T KOG1328|consen 181 TSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDE 218 (1103)
T ss_pred cccccccCCcchhhheeeehhccccceeeeecccCCcc
Confidence 88999999999999776666433332334455666554
No 234
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=76.29 E-value=9.4 Score=35.37 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=44.7
Q ss_pred hcCCCCCcccHHHHHHHHHhc---CCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008959 165 VDYNQDGQLSFKEFSDLISAF---GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQE 223 (547)
Q Consensus 165 ~D~d~dG~Is~~Ef~~~l~~l---g~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~ 223 (547)
|-..+...++-.-|..+|... +..++..++.-+|..+-..+...|+|++|.++|..+.+
T Consensus 11 fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~ 72 (154)
T PF05517_consen 11 FGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAE 72 (154)
T ss_dssp SSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHH
T ss_pred hcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHH
Confidence 344555689999999999884 44588889999999987666777999999999987654
No 235
>PLN02270 phospholipase D alpha
Probab=75.68 E-value=3.6 Score=47.59 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=29.8
Q ss_pred cCCceEEEEEcccceE-eeeecCCC-CCCCchhhHHHHH
Q 008959 67 FKDKWLACVSLGEQTC-RTAISDNT-DKPIWNSEKKLLL 103 (547)
Q Consensus 67 ~~dd~~~~v~~g~~~f-rT~vi~~t-LnP~Wne~~kll~ 103 (547)
..+||||-|.+++.+. ||+++.+. .||+|||.|.+.+
T Consensus 45 ~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 45 GESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred CCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEee
Confidence 3568998888887655 99999885 7999999877655
No 236
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=75.56 E-value=2.7 Score=37.99 Aligned_cols=51 Identities=25% Similarity=0.522 Sum_probs=33.0
Q ss_pred ceeeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEE
Q 008959 414 EVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQF 487 (547)
Q Consensus 414 ~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~ 487 (547)
..+.||++|++....++.+. .|+ ..|||+ |..+ -|.+ ....||++|+|..+
T Consensus 3 ~~i~aPv~G~vi~l~~v~D~--------vFs-~~~lG~---------GvaI----~p~~-~~v~AP~~G~v~~i 53 (132)
T PF00358_consen 3 ITIYAPVSGKVIPLEEVPDP--------VFS-QKMLGD---------GVAI----IPSD-GKVYAPVDGTVTMI 53 (132)
T ss_dssp EEEE-SSSEEEEEGGGSSSH--------HHH-TTSSSE---------EEEE----EESS-SEEEESSSEEEEEE
T ss_pred eEEEeeCCcEEEEhhhCCch--------HHC-CCCCcC---------EEEE----EcCC-CeEEEEeeEEEEEE
Confidence 46899999999998877642 233 245553 2222 2444 47889999999654
No 237
>PLN02222 phosphoinositide phospholipase C 2
Probab=75.41 E-value=2.7 Score=47.07 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=36.0
Q ss_pred eeEEEEEEeeccc------------ccCCceEEEEEcc-----cceEeeeecCCCCCCCchhhHHH
Q 008959 53 AGIALLTLISAEM------------KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 53 ~gi~~i~~~~A~~------------~~~dd~~~~v~~g-----~~~frT~vi~~tLnP~Wne~~kl 101 (547)
...|+|+|++++. ...-|||+.|.+- ....||+++.++.||+||+.++.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F 516 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEF 516 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEE
Confidence 4679999999951 1124678766653 34689999999999999985443
No 238
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=74.57 E-value=2 Score=46.96 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=37.2
Q ss_pred eEEEEEEeecc----c---ccCCceEEEEEcccceEeeeecCCCCCCCchh
Q 008959 54 GIALLTLISAE----M---KFKDKWLACVSLGEQTCRTAISDNTDKPIWNS 97 (547)
Q Consensus 54 gi~~i~~~~A~----~---~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne 97 (547)
|.|-+.|..|+ | .--.|-|+-+.+++.+|||.|..++|||.||.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wns 53 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNS 53 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccc
Confidence 67788888885 3 23346789999999999999999999999996
No 239
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=73.13 E-value=5.2 Score=35.72 Aligned_cols=50 Identities=26% Similarity=0.503 Sum_probs=32.3
Q ss_pred eeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEE
Q 008959 416 AVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 488 (547)
Q Consensus 416 ~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~ 488 (547)
+.||++|++....++.+. .|. ..+||+ | +++ -|.+ +...||++|+|..+.
T Consensus 1 i~aPv~G~~~~l~~v~D~-vFs--------~~~lG~---------G-vaI---~P~~-~~v~AP~~G~v~~i~ 50 (124)
T cd00210 1 LASPITGEIVPLDQVPDE-VFA--------SKMMGD---------G-FAI---KPSD-GKVVAPVDGTIVQIF 50 (124)
T ss_pred CccccceEEEEhhhCcCh-Hhc--------ccCccc---------e-EEE---EccC-CeEECcCCeEEEEEc
Confidence 468999999998877642 111 123443 2 232 3555 688999999997654
No 240
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=73.08 E-value=3.9 Score=45.70 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHH
Q 008959 155 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDEL 214 (547)
Q Consensus 155 ~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef 214 (547)
..+++.+|..+|.+++|.|+|.+|...+..+.....-+.+.-+|+.+|.+++ ..+.+|.
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4568889999999999999999999999887666666788889999999999 8888877
No 241
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.62 E-value=5.5 Score=43.14 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=38.8
Q ss_pred cccccceeEEEEEEeecc------cccCCceEEEEEccc-----ceEeeeecCCCCCCCchhhH
Q 008959 47 LNEEDFAGIALLTLISAE------MKFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEK 99 (547)
Q Consensus 47 ~~~~~~~gi~~i~~~~A~------~~~~dd~~~~v~~g~-----~~frT~vi~~tLnP~Wne~~ 99 (547)
++-....|.|.|.|++|+ .++-.|+|+.+.+=. ..=||.+.++++||+|||.+
T Consensus 291 L~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf 354 (421)
T KOG1028|consen 291 LCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETF 354 (421)
T ss_pred EEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccE
Confidence 334566899999999994 466777886655422 24567788999999999943
No 242
>PLN02228 Phosphoinositide phospholipase C
Probab=68.18 E-value=4.4 Score=45.35 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=35.2
Q ss_pred ceeEEEEEEeecccc------------cCCceEEEEEc-----ccceEeeeecCCCCCCCc-hhhHH
Q 008959 52 FAGIALLTLISAEMK------------FKDKWLACVSL-----GEQTCRTAISDNTDKPIW-NSEKK 100 (547)
Q Consensus 52 ~~gi~~i~~~~A~~~------------~~dd~~~~v~~-----g~~~frT~vi~~tLnP~W-ne~~k 100 (547)
+...|.|+|++|+.- -..|||+.|.+ ....+||++++++.||+| |+.++
T Consensus 429 ~~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~ 495 (567)
T PLN02228 429 IKTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFL 495 (567)
T ss_pred cCceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEE
Confidence 345799999999731 11466766654 234689999999999999 88554
No 243
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=65.91 E-value=9.1 Score=34.04 Aligned_cols=50 Identities=26% Similarity=0.523 Sum_probs=31.8
Q ss_pred eeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEE
Q 008959 416 AVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 488 (547)
Q Consensus 416 ~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~ 488 (547)
+.||++|++....++.+. .| + ..++|+ |. ++ -|.+ ....||++|+|..+.
T Consensus 1 i~aP~~G~~i~l~~v~D~-vF-------s-~~~~G~---------G~-aI---~P~~-~~v~AP~~G~v~~v~ 50 (121)
T TIGR00830 1 IVSPISGEIVPLDQVPDE-VF-------A-EKIVGD---------GF-AI---LPTD-GKVVAPVDGKIGKIF 50 (121)
T ss_pred CccccCceEEEhhhCCCh-Hh-------c-ccCccc---------eE-EE---EcCC-CeEEccCCeEEEEEc
Confidence 468999999998877642 11 1 124443 22 22 3555 678899999996544
No 244
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=64.85 E-value=40 Score=28.35 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc-------CCc----chHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhh
Q 008959 157 FARRILSIVDYNQDGQLSFKEFSDLISAF-------GNQ----VAANKKEELFKAADKNGDGVVSVDELAALLALQQ 222 (547)
Q Consensus 157 ~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l-------g~~----~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~ 222 (547)
..+.+|+.+ .|.+|.++..-|..++.++ |+. ..+.-++.+|+..- .+-.|+.++|...|...+
T Consensus 4 KyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 4 KYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--
T ss_pred HHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCC
Confidence 378899998 7889999999888888652 432 24566888898862 455799999999997653
No 245
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.51 E-value=6.7 Score=44.63 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=44.2
Q ss_pred HHHHHHhhCCCCCchhHHH-HhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKIVGK-ISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLIS 183 (547)
Q Consensus 122 l~~~F~~~D~d~dG~Il~~-ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~ 183 (547)
...+|+.+|+...|.+-+. .-..|......... +..+|.+-|.|+||+++.+||.-+|.
T Consensus 197 Y~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~---LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQ---LAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHhhhcccccccccccHHHHHHHHhcCCchhh---HhhheeeeccCCCCcccHHHHHHHHH
Confidence 7899999999999998221 22222223344445 88999999999999999999987664
No 246
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=61.28 E-value=6.4 Score=39.26 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=27.6
Q ss_pred ChhhhhccccCCCCCcCCCCCCCceeeecCCceeeeeeecCC
Q 008959 391 TFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVED 432 (547)
Q Consensus 391 sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~ 432 (547)
-|-.+|.|.+-|+ .-.|.|+.++++||||++...+++..
T Consensus 62 r~l~~~~Rp~dp~---~v~P~D~~i~~~pakG~~~sv~~ll~ 100 (239)
T COG0688 62 RFLKYFFRPIDPE---RVSPADGRIVVSPADGRVYSVEELLG 100 (239)
T ss_pred HHHhcccccCCCC---ccCCCCCcEEEecCCCeEEEHHHhcC
Confidence 3445677877676 22344678999999999998776543
No 247
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=59.68 E-value=3.7 Score=46.38 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=36.4
Q ss_pred EEEEEeecc------cccCCceEEEEEcccce-------EeeeecCCCCCCCchhhHHHHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLGEQT-------CRTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g~~~-------frT~vi~~tLnP~Wne~~kll~ 103 (547)
|-++|+.|+ -.+=+|||+||-++.+. -||+|...+|||+++|.++.-+
T Consensus 949 L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsV 1009 (1103)
T KOG1328|consen 949 LVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSV 1009 (1103)
T ss_pred hhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeec
Confidence 345667774 36677788888877653 4899999999999999777655
No 248
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=58.42 E-value=15 Score=44.34 Aligned_cols=60 Identities=12% Similarity=0.234 Sum_probs=50.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008959 160 RILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 160 ~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
+.|+.+|+||.|-|+..||..+|..- +..++.+++-++.-...|.+..++|+||..-+.+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 45778899999999999999998652 3367788999999999999999999999887654
No 249
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=58.07 E-value=5.6 Score=44.32 Aligned_cols=145 Identities=13% Similarity=0.166 Sum_probs=85.4
Q ss_pred ccceeEEEEEEeec-----------ccccCCceEEEEEcccceEeeeecCCCCCCCchhhHHHHHhcCCCcccceecccC
Q 008959 50 EDFAGIALLTLISA-----------EMKFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFED 118 (547)
Q Consensus 50 ~~~~gi~~i~~~~A-----------~~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne~~kll~e~~~~~~~~isl~e~ 118 (547)
+.-++...|+.-.- ....+++|+.++.+|...|.+.+-+...+|..++ +
T Consensus 381 E~~~~sfnl~~~a~sn~~a~r~~~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~--~------------------ 440 (975)
T KOG2419|consen 381 ESTCKSFNLLDPASSNLPALRNRLSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFA--K------------------ 440 (975)
T ss_pred cccceEEEeecCCcccchhhhhccCccccccCchhHhhhhhHHhhhhhhccccchhhhh--h------------------
Confidence 56667777765443 2688999999999999999999988888887776 1
Q ss_pred hHHHHHHHHhhCCCCCchh-----------HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCC-----------------
Q 008959 119 SDADSEVFDLLDPSSSNKI-----------VGKISLSCSVEDPIETEKSFARRILSIVDYNQD----------------- 170 (547)
Q Consensus 119 ~~el~~~F~~~D~d~dG~I-----------l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~d----------------- 170 (547)
.++..+|-+.+++. |...+.+... .. .+-...+..+|..+|.+++
T Consensus 441 -----~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~-~~-~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~ 513 (975)
T KOG2419|consen 441 -----RILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKL-AW-FDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYP 513 (975)
T ss_pred -----hcccccccccCceEeeehHHHHHHHHHHHHHhhhc-ch-hhhcccchhheehhhccCCcccCccccchhhhcccc
Confidence 12223333333332 2222222211 00 0001114566777777777
Q ss_pred ------CcccHHHHHHHHHhc-------CCcchHHHHHHHHHHhcCCC--CCCcCHHHHHHHHHhh
Q 008959 171 ------GQLSFKEFSDLISAF-------GNQVAANKKEELFKAADKNG--DGVVSVDELAALLALQ 221 (547)
Q Consensus 171 ------G~Is~~Ef~~~l~~l-------g~~~~~eel~~~F~~~D~d~--dG~Is~~Ef~~~l~~l 221 (547)
|.++.+|...++... -+.++..+-..++..+.+.+ ...|+..|+.+-++..
T Consensus 514 ~~~~s~~~vtVDe~v~ll~~~i~~V~~~~er~tq~~q~p~~n~~n~~~~~~Qs~~r~q~~E~~qs~ 579 (975)
T KOG2419|consen 514 FLKKSFGVVTVDELVALLALDIIQVMLYLERLTQQEQEPIINHFNKSAWAGQSITRSQLVEGLQSW 579 (975)
T ss_pred ccccccCeeEHHHHHHHHHHHHHHHHHHHHHhhhccccchhhcccCCCCCccccchhhhhhhhhcc
Confidence 999999998887631 11223333344566665544 3457777776665553
No 250
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=55.51 E-value=37 Score=39.88 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=62.1
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChH-HHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC-CcchHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIET-EKSFARRILSIVDYNQDGQLSFKEFSDLISAFG-NQVAANKKE 195 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~-e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg-~~~~~eel~ 195 (547)
++..|+.+|....|.. +..++..++...-.++ -...|..+....|.+.-|.+++.||.+.|..-. ...++.++.
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r~i 828 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELRAI 828 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHHHH
Confidence 7788888888766655 4455566665222211 134466666667777778899999888886633 334556777
Q ss_pred HHHHHhcCCCCCCcCHHHHHH
Q 008959 196 ELFKAADKNGDGVVSVDELAA 216 (547)
Q Consensus 196 ~~F~~~D~d~dG~Is~~Ef~~ 216 (547)
..|+.+-++.. +|..+||.+
T Consensus 829 ~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 829 LAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHcchh-HHHHHHHHh
Confidence 77877766554 788888877
No 251
>PLN02952 phosphoinositide phospholipase C
Probab=55.32 E-value=26 Score=39.66 Aligned_cols=55 Identities=22% Similarity=0.409 Sum_probs=43.3
Q ss_pred CCCcccHHHHHHHHHhcCC--cchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhcc
Q 008959 169 QDGQLSFKEFSDLISAFGN--QVAANKKEELFKAADKNGDGVVSVDELAALLALQQEK 224 (547)
Q Consensus 169 ~dG~Is~~Ef~~~l~~lg~--~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~ 224 (547)
+.|.++|+||..+.+.+.. ..+..++..+|..+-.++ +.++.++|..+|.+.+..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e 69 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDE 69 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCC
Confidence 4589999999888776542 336789999999996543 689999999999886543
No 252
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=54.74 E-value=15 Score=41.88 Aligned_cols=53 Identities=23% Similarity=0.398 Sum_probs=37.3
Q ss_pred CceeeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEE
Q 008959 413 EEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 488 (547)
Q Consensus 413 ~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~ 488 (547)
...+.||++|++....+|.+. .|+ ..++|+ |.. .-|.| +..++|++|+|..+.
T Consensus 498 ~~~v~aP~~G~vi~l~~v~D~--------vFs-~~~~G~---------Gva----I~P~~-~~v~AP~~G~v~~v~ 550 (648)
T PRK10255 498 IAELVSPITGDVVALDQVPDE--------AFA-SKAVGD---------GVA----VKPTD-KIVVSPAAGTIVKIF 550 (648)
T ss_pred ceEEEecCCcEEEEcccCcch--------hhh-cccccC---------cEE----EeCCC-CeEEecCCeEEEEEc
Confidence 345899999999998888653 233 345554 222 34666 799999999998654
No 253
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=52.49 E-value=8.5 Score=39.65 Aligned_cols=57 Identities=26% Similarity=0.445 Sum_probs=43.6
Q ss_pred HHHHHHhhCCCCCchh-------HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 008959 122 DSEVFDLLDPSSSNKI-------VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 184 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-------l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~ 184 (547)
+.=.|..+|.|.++.| |+.++.... .+ . .=.+.+|+..|.|+|-.|+++||..-|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~-r---kC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KP-R---KCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhc--cH-H---HHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 6668899999999988 666655432 11 1 12678999999999999999999988754
No 254
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=51.47 E-value=17 Score=37.76 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=47.5
Q ss_pred hHHHHHHHHhhCCCCCchhHHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 008959 119 SDADSEVFDLLDPSSSNKIVGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG 186 (547)
Q Consensus 119 ~~el~~~F~~~D~d~dG~Il~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg 186 (547)
.+++.=+|+.+|.|.|+.+-..-+..+.. ...+.- ++..|...|...||.|+-.|+..-+..-+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l-dknE~C---ikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL-DKNEAC---IKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc-cCchhH---HHHHHhhhcccccCccccchhhhhhccCC
Confidence 34477899999999999983333333332 222333 78899999999999999999998886544
No 255
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=49.97 E-value=10 Score=42.92 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=37.6
Q ss_pred EEEEEeecc------cccCCceEEEEEccc-ceEeeeecCCCCCCCchhhHHH
Q 008959 56 ALLTLISAE------MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKL 101 (547)
Q Consensus 56 ~~i~~~~A~------~~~~dd~~~~v~~g~-~~frT~vi~~tLnP~Wne~~kl 101 (547)
|.|.|+||+ ..+..|+|+.|.+.+ -++||.++-.+|-|-|.|.|..
T Consensus 7 l~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~ 59 (800)
T KOG2059|consen 7 LKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYF 59 (800)
T ss_pred eeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEE
Confidence 788999995 466777787777765 4899999999999999996543
No 256
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=49.92 E-value=37 Score=27.42 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHhhhccCcccccchhHHHHHhh
Q 008959 193 KKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEV 240 (547)
Q Consensus 193 el~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~~~~~~~~~~~~~~l~~ 240 (547)
+|+.+|..+-. +.+.||.++|.++|.+.+..... ....|.+++.+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~--~~~~~~~li~~ 45 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRL--TDEQAKELIEK 45 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTS--SHHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccC--cHHHHHHHHHH
Confidence 57889999965 78999999999999876543211 12356666654
No 257
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=49.32 E-value=39 Score=39.70 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchH-HH-HHHHHH---HhcCCCCCCcCHHHHHHHHHhhhcc
Q 008959 153 TEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAA-NK-KEELFK---AADKNGDGVVSVDELAALLALQQEK 224 (547)
Q Consensus 153 ~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~-ee-l~~~F~---~~D~d~dG~Is~~Ef~~~l~~l~~~ 224 (547)
.....++..|..+|....|.++.++|...+..+|....+ ++ +.++|. .-|.+.-|.+++.||...|....+.
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh
Confidence 335668999999999999999999999999999876554 22 334444 4466667999999999999775443
No 258
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=47.98 E-value=16 Score=29.12 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008959 189 VAANKKEELFKAADKNGDGVVSVDELAALL 218 (547)
Q Consensus 189 ~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l 218 (547)
.+.+++.+.|+.+ .++.++||-+||.+.|
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 4668899999999 7888999999999876
No 259
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=47.84 E-value=19 Score=41.42 Aligned_cols=43 Identities=21% Similarity=0.469 Sum_probs=29.6
Q ss_pred EEEEEEeecc----c--ccCCceEEEEEccc----ceEeee-ecCCCCCCCch-h
Q 008959 55 IALLTLISAE----M--KFKDKWLACVSLGE----QTCRTA-ISDNTDKPIWN-S 97 (547)
Q Consensus 55 i~~i~~~~A~----~--~~~dd~~~~v~~g~----~~frT~-vi~~tLnP~Wn-e 97 (547)
-|.|.|++|+ . +-.+|+..|-.+|. ..|+|. |+.+.|||+|| +
T Consensus 1066 ~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e 1120 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPE 1120 (1267)
T ss_pred EEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCc
Confidence 3688999995 1 33346666666664 456555 67889999999 5
No 260
>PLN02230 phosphoinositide phospholipase C 4
Probab=46.79 E-value=16 Score=41.25 Aligned_cols=63 Identities=27% Similarity=0.356 Sum_probs=0.0
Q ss_pred EEEEEEeecc---cccC----------CceEEEEEcc----cceEeeeecCCCCCCCchhhHHHHHhcCCCcccceeccc
Q 008959 55 IALLTLISAE---MKFK----------DKWLACVSLG----EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFE 117 (547)
Q Consensus 55 i~~i~~~~A~---~~~~----------dd~~~~v~~g----~~~frT~vi~~tLnP~Wne~~kll~e~~~~~~~~isl~e 117 (547)
.|.|.|++++ +.++ |++..|--.| ....||++..++.||+||+.+..-+..-......+.+.+
T Consensus 470 ~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d 549 (598)
T PLN02230 470 TLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHE 549 (598)
T ss_pred EEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEE
No 261
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=44.33 E-value=20 Score=32.36 Aligned_cols=44 Identities=9% Similarity=-0.038 Sum_probs=34.3
Q ss_pred EEEEEeecc--------cccC--CceEEEEEcc---cceEeeeecCCCCC--CCchhhH
Q 008959 56 ALLTLISAE--------MKFK--DKWLACVSLG---EQTCRTAISDNTDK--PIWNSEK 99 (547)
Q Consensus 56 ~~i~~~~A~--------~~~~--dd~~~~v~~g---~~~frT~vi~~tLn--P~Wne~~ 99 (547)
|||.|..|+ ..++ +|+|++..+- ....+|.|..++++ |.||+++
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRf 60 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRF 60 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEE
Confidence 688888885 1333 8888887765 46789999999999 9999943
No 262
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=43.48 E-value=36 Score=34.94 Aligned_cols=91 Identities=21% Similarity=0.188 Sum_probs=52.9
Q ss_pred HHHHHHhhCCCCCchh--------HHHHhhhcCCCCCChHH----------HHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 008959 122 DSEVFDLLDPSSSNKI--------VGKISLSCSVEDPIETE----------KSFARRILSIVDYNQDGQLSFKEFSDLIS 183 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I--------l~~ll~~l~~~~~~~~e----------~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~ 183 (547)
-+-.|.+.|.|+||.+ |..-+..+. ++..++ ...-.-.++.+|.|.|..|+.+||...-.
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvY--dpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVY--DPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 4567778899999987 222233332 222111 11122467889999999999999998876
Q ss_pred hcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008959 184 AFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 220 (547)
Q Consensus 184 ~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~ 220 (547)
.-....+.+.++. .+..-.-|-+|+.++=+.
T Consensus 324 ~kef~~p~e~WEt------l~q~~~yTeEEL~~fE~e 354 (442)
T KOG3866|consen 324 NKEFNPPKEEWET------LGQKKVYTEEELQQFERE 354 (442)
T ss_pred hcccCCcchhhhh------hcccccccHHHHHHHHHH
Confidence 5433344344432 222334566666655443
No 263
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=40.58 E-value=48 Score=36.93 Aligned_cols=74 Identities=20% Similarity=0.202 Sum_probs=53.1
Q ss_pred ccceecccChHH-HHHHHHhhCCCCCchh-HHHHhhhcCCC--CCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008959 110 VARISVFEDSDA-DSEVFDLLDPSSSNKI-VGKISLSCSVE--DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 185 (547)
Q Consensus 110 ~~~isl~e~~~e-l~~~F~~~D~d~dG~I-l~~ll~~l~~~--~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~l 185 (547)
...+.+++++-. .+..|..+|.|+.|.+ +..+...+..+ ..+++. +.+..+..|.+-+|.+...||.+++..+
T Consensus 582 ~~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~---~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 582 SIPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDR---LHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred ccccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 344555555555 7889999999999988 44444333322 344444 7888888899999999999999998775
Q ss_pred C
Q 008959 186 G 186 (547)
Q Consensus 186 g 186 (547)
.
T Consensus 659 ~ 659 (680)
T KOG0042|consen 659 K 659 (680)
T ss_pred h
Confidence 3
No 264
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=40.47 E-value=26 Score=28.00 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=32.5
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhh
Q 008959 172 QLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQ 222 (547)
Q Consensus 172 ~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~ 222 (547)
.++|..+..++. ..++.+++..+...|+.=..++|+.+||.+.++..-
T Consensus 8 ~~~F~~L~~~l~---~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 8 WMPFPMLFSALS---KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIV 55 (70)
T ss_pred cccHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 355555555554 345666666666667666678899999999887753
No 265
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.17 E-value=15 Score=43.53 Aligned_cols=68 Identities=28% Similarity=0.439 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 152 ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 152 ~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
..+.....++|...|.+.+|.|+..+....+...| ++...+...+...|.++.|.|+++||.-.+..+
T Consensus 279 p~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 279 PSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred hHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 34444477799999999999999999999987755 788899999999999999999999998777654
No 266
>PLN02352 phospholipase D epsilon
Probab=36.34 E-value=41 Score=39.04 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=35.3
Q ss_pred ceeEEEEEEeecc-----------cccCCceEEEEEcccceE-eeeecCCCCCCCchhhHHHHH
Q 008959 52 FAGIALLTLISAE-----------MKFKDKWLACVSLGEQTC-RTAISDNTDKPIWNSEKKLLL 103 (547)
Q Consensus 52 ~~gi~~i~~~~A~-----------~~~~dd~~~~v~~g~~~f-rT~vi~~tLnP~Wne~~kll~ 103 (547)
.-|.|-++|.+|+ .+...+|||-|.+++... || .++-||+|+|.+.+.+
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ 68 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILC 68 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEe
Confidence 3478889999994 123338888888877644 77 5566999999876655
No 267
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=34.76 E-value=1e+02 Score=28.46 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=29.9
Q ss_pred HHHHhhhcCCCC--CChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 008959 138 VGKISLSCSVED--PIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 184 (547)
Q Consensus 138 l~~ll~~l~~~~--~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~ 184 (547)
|.+++..++..+ .+..+ +.-+|..+-..+...|+|++|..+|..
T Consensus 24 F~Kl~kD~~i~d~k~t~td---vDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 24 FAKLCKDCGIIDKKLTSTD---VDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHTSS--SSS-HHH---HHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCchHH---HHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 677777665532 34444 888999877667778999999999864
No 268
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.68 E-value=1.3e+02 Score=27.64 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=11.7
Q ss_pred HHHHhcCCc--chHHHHHHHHHHhcCC
Q 008959 180 DLISAFGNQ--VAANKKEELFKAADKN 204 (547)
Q Consensus 180 ~~l~~lg~~--~~~eel~~~F~~~D~d 204 (547)
.+|..+|.. .+++++..-|+..|.+
T Consensus 140 ~LMe~LGl~~dddEdDl~~~~~q~Di~ 166 (169)
T COG3078 140 ELMEKLGLSYDDDEDDLERDEKQEDIM 166 (169)
T ss_pred HHHHHhCCccCCchHHHHHHHHHHHHH
Confidence 344444432 2344555556555543
No 269
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=33.54 E-value=15 Score=35.19 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=38.5
Q ss_pred HHhhcCC-CCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008959 162 LSIVDYN-QDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 218 (547)
Q Consensus 162 f~~~D~d-~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l 218 (547)
|-.+|.- .||++|-.|+.-+-..+- .-+.-+...|+..|.|+||+|+.+|+...+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~i--pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCCcc--cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 3445543 588999888765432211 123346788999999999999999998765
No 270
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=33.03 E-value=2.1e+02 Score=22.27 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=19.6
Q ss_pred ceeeecCcCeEEeEEEEecCceec
Q 008959 473 YHRFHLPVSGIIEQFVDIPGCLYT 496 (547)
Q Consensus 473 YHr~h~P~~G~v~~~~~i~G~~~~ 496 (547)
.+...+|++|+|.+...-+|..-.
T Consensus 39 ~~~I~a~~~G~V~~i~v~~G~~V~ 62 (71)
T PRK05889 39 EIPVLAEVAGTVSKVSVSVGDVIQ 62 (71)
T ss_pred eeEEeCCCCEEEEEEEeCCCCEEC
Confidence 566789999999999988887543
No 271
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=32.34 E-value=67 Score=29.28 Aligned_cols=48 Identities=10% Similarity=0.248 Sum_probs=31.0
Q ss_pred HHHHHHhhcCC-------CCCcccHHHHHHHHHh-cCCcchHHHHHHHHHHhcCCC
Q 008959 158 ARRILSIVDYN-------QDGQLSFKEFSDLISA-FGNQVAANKKEELFKAADKNG 205 (547)
Q Consensus 158 l~~~f~~~D~d-------~dG~Is~~Ef~~~l~~-lg~~~~~eel~~~F~~~D~d~ 205 (547)
++++++.|..+ ..+.|+++.|...|.. +..+++++-++.+|..|-...
T Consensus 27 lkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 27 LKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred HHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 56666666433 3468999999999998 777888888999999986554
No 272
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=32.20 E-value=82 Score=35.64 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=42.3
Q ss_pred HHHHHHhhCCCCCchh-HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHH
Q 008959 122 DSEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEF 178 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I-l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef 178 (547)
+..+|.++|.+++|.+ |+++...+.. -...+-.+.+.-+|+.+|.+++ ..+.+|.
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~-l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSI-LKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHH-HHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 7899999999999999 7776655432 1122223448889999999999 9999988
No 273
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=31.92 E-value=2.1e+02 Score=21.23 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=18.7
Q ss_pred ceeeecCcCeEEeEEEEecCcee
Q 008959 473 YHRFHLPVSGIIEQFVDIPGCLY 495 (547)
Q Consensus 473 YHr~h~P~~G~v~~~~~i~G~~~ 495 (547)
....++|.+|+|.....-+|..-
T Consensus 36 ~~~i~ap~~G~v~~~~~~~G~~V 58 (67)
T cd06850 36 ENEVTAPVAGVVKEILVKEGDQV 58 (67)
T ss_pred EEEEeCCCCEEEEEEEECCCCEE
Confidence 45689999999998888778653
No 274
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=28.03 E-value=1e+02 Score=28.62 Aligned_cols=52 Identities=19% Similarity=0.412 Sum_probs=34.0
Q ss_pred CceeeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEE
Q 008959 413 EEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQF 487 (547)
Q Consensus 413 ~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~ 487 (547)
...+.||..|++....+|.+. .| | +.|+|+- . + .-|.+ -..+||++|+|...
T Consensus 5 ~~~i~sP~~G~vv~Ls~VpD~-vF-------s-~k~mGdG---------i-A---I~P~~-g~vvAPvdG~v~~i 56 (156)
T COG2190 5 KEEIYSPLSGEVVPLSDVPDP-VF-------S-EKMVGDG---------V-A---IKPSE-GEVVAPVDGTVVLI 56 (156)
T ss_pred cEEEEccCCceEEEchhCCch-Hh-------h-cccccCc---------E-E---EecCC-CeEEeccCcEEEEE
Confidence 467899999999998877642 22 2 2355542 1 1 23555 56789999988543
No 275
>PLN02228 Phosphoinositide phospholipase C
Probab=25.41 E-value=2.1e+02 Score=32.27 Aligned_cols=61 Identities=18% Similarity=0.440 Sum_probs=46.5
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhc-CCc-chHHHHHHHHHHhcCC----CCCCcCHHHHHHHHHh
Q 008959 158 ARRILSIVDYNQDGQLSFKEFSDLISAF-GNQ-VAANKKEELFKAADKN----GDGVVSVDELAALLAL 220 (547)
Q Consensus 158 l~~~f~~~D~d~dG~Is~~Ef~~~l~~l-g~~-~~~eel~~~F~~~D~d----~dG~Is~~Ef~~~l~~ 220 (547)
+..+|..+-. ++.++.++|..+|... ++. .+.+.+.++|..+... ..|.++.+.|..+|..
T Consensus 26 i~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 26 IKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 8888888753 3689999999999874 333 4556788888887543 3467999999999965
No 276
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=25.18 E-value=2.3e+02 Score=24.67 Aligned_cols=62 Identities=15% Similarity=0.315 Sum_probs=45.2
Q ss_pred HhhcCCCCCcccHHHHHHHHHhc----------CCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhcc
Q 008959 163 SIVDYNQDGQLSFKEFSDLISAF----------GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEK 224 (547)
Q Consensus 163 ~~~D~d~dG~Is~~Ef~~~l~~l----------g~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~~ 224 (547)
+.+|+..+-+|+.+++..+...= |++++..-+-+++-.-...+...++.+=+.++++-.|..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~ 81 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGGS 81 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChh
Confidence 35799999999999999998751 445666666676666666677778887777777665553
No 277
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=24.95 E-value=2.3e+02 Score=25.36 Aligned_cols=63 Identities=21% Similarity=0.207 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCC--CCcccHHHHHHHHHhcCC----------cch--------HHHHHHHHHHhcCCCCCCcCHHHHHHH
Q 008959 158 ARRILSIVDYNQ--DGQLSFKEFSDLISAFGN----------QVA--------ANKKEELFKAADKNGDGVVSVDELAAL 217 (547)
Q Consensus 158 l~~~f~~~D~d~--dG~Is~~Ef~~~l~~lg~----------~~~--------~eel~~~F~~~D~d~dG~Is~~Ef~~~ 217 (547)
+.++|+....+. |..|+..|+..++..+.. ..+ +--+..++..||.+++|.|+.-+|...
T Consensus 43 v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kva 122 (127)
T PF09068_consen 43 VIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVA 122 (127)
T ss_dssp HHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHH
T ss_pred HHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHH
Confidence 667777766553 467999999998877531 111 112456788999999999999999877
Q ss_pred HHh
Q 008959 218 LAL 220 (547)
Q Consensus 218 l~~ 220 (547)
+..
T Consensus 123 L~~ 125 (127)
T PF09068_consen 123 LIT 125 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 278
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=24.83 E-value=77 Score=36.23 Aligned_cols=51 Identities=24% Similarity=0.486 Sum_probs=35.0
Q ss_pred eeeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEE
Q 008959 415 VAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 488 (547)
Q Consensus 415 ~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~ 488 (547)
.+.||++|++....++.|. .| + +.++|+ |.. .-|.| ...++|++|+|..+.
T Consensus 480 ~i~aP~~G~v~~L~~v~D~-vF-------s-~~~mG~---------G~A----I~P~~-~~v~AP~~G~v~~vf 530 (627)
T PRK09824 480 GICSPMTGEVVPLEQVADT-TF-------A-SGLLGK---------GIA----ILPSV-GEVRSPVAGRVASLF 530 (627)
T ss_pred hcccccceEEeeHHHCCCc-cc-------c-ccccCC---------ceE----ecCCC-CeEEccCCeEEEEEc
Confidence 5789999999998888642 22 1 134443 222 23777 699999999997653
No 279
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=24.76 E-value=89 Score=35.67 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=35.4
Q ss_pred ceeeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEE
Q 008959 414 EVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 488 (547)
Q Consensus 414 ~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~ 488 (547)
..+.||++|++....++.+. .|- ..++|+ |..+ -|.| +..++|++|+|..+.
T Consensus 463 ~~i~aP~~G~~~~l~~v~D~-vFs--------~~~~G~---------G~ai----~P~~-~~v~aP~~G~v~~~~ 514 (610)
T TIGR01995 463 ESLYAPVAGEMLPLNEVPDE-VFS--------SGAMGK---------GIAI----LPTE-GEVVAPVDGTVTAVF 514 (610)
T ss_pred ceeccccceEEeeHhhCCCc-ccc--------ccCcCC---------ceEe----eCCC-CEEECCCCeEEEEEc
Confidence 35899999999998887642 221 134443 3222 3777 789999999997653
No 280
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=24.57 E-value=3.5e+02 Score=24.31 Aligned_cols=61 Identities=8% Similarity=0.025 Sum_probs=38.4
Q ss_pred CCceeeecCCceeeeeeecCCCceEEEcCcccccccccCCCcccCCcCCCeEEEEEeCCCCceeeecCcCeEEeEEEEec
Q 008959 412 REEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIP 491 (547)
Q Consensus 412 ~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHr~h~P~~G~v~~~~~i~ 491 (547)
+...+.+|.+|+|..+. ++..+.+.-...-..| =+-.-.+-..+|.+|+|.++..-.
T Consensus 60 ~~~~v~Ap~~G~V~~i~-V~~Gd~V~~Gq~L~~l----------------------EamKme~eI~Ap~~G~V~~i~v~~ 116 (130)
T PRK06549 60 GADAMPSPMPGTILKVL-VAVGDQVTENQPLLIL----------------------EAMKMENEIVASSAGTVTAIHVTP 116 (130)
T ss_pred CCcEEECCCCEEEEEEE-eCCCCEECCCCEEEEE----------------------eccCccEEEEcCCCeEEEEEEeCC
Confidence 45678899999999865 4433322211111111 222345677899999999998888
Q ss_pred Ccee
Q 008959 492 GCLY 495 (547)
Q Consensus 492 G~~~ 495 (547)
|.-.
T Consensus 117 Gd~V 120 (130)
T PRK06549 117 GQVV 120 (130)
T ss_pred CCEe
Confidence 8643
No 281
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=23.80 E-value=2.9e+02 Score=23.73 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhcC---CCCCCcCHHHHHHHHHhhh
Q 008959 157 FARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADK---NGDGVVSVDELAALLALQQ 222 (547)
Q Consensus 157 ~l~~~f~~~D~d~dG~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~---d~dG~Is~~Ef~~~l~~l~ 222 (547)
.++.-|..+-. ||.|....|-..+ |-..+.+-..++|..+-. -..+.|+.+|+..+-.++.
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 36667777666 8999999998876 433456666777776532 1256899999998876654
No 282
>PLN02222 phosphoinositide phospholipase C 2
Probab=23.70 E-value=2.4e+02 Score=32.01 Aligned_cols=61 Identities=8% Similarity=0.159 Sum_probs=46.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhc-CCc-chHHHHHHHHHHhcC-CCCCCcCHHHHHHHHHh
Q 008959 158 ARRILSIVDYNQDGQLSFKEFSDLISAF-GNQ-VAANKKEELFKAADK-NGDGVVSVDELAALLAL 220 (547)
Q Consensus 158 l~~~f~~~D~d~dG~Is~~Ef~~~l~~l-g~~-~~~eel~~~F~~~D~-d~dG~Is~~Ef~~~l~~ 220 (547)
+..+|..+-. ++.++.++|..+|... ++. .+.+.+.++|+.+.. -..+.++++.|..+|..
T Consensus 27 i~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 27 IKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 8888888753 4799999999999874 432 467778888887632 23567999999999965
No 283
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=23.54 E-value=3.4e+02 Score=22.66 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=43.5
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhh
Q 008959 171 GQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQ 222 (547)
Q Consensus 171 G~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~ 222 (547)
..||.+||..+....+-.++.++++.+...+-.+.=...+-+|-.+++.++.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999988777666777788777777654
No 284
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=23.52 E-value=92 Score=28.36 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=35.7
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhcCCC-------CCCcCHHHHHHHHHhhhc-cCcccccchhHHHHH
Q 008959 171 GQLSFKEFSDLISAFGNQVAANKKEELFKAADKNG-------DGVVSVDELAALLALQQE-KEPLMNCCPVCGETL 238 (547)
Q Consensus 171 G~Is~~Ef~~~l~~lg~~~~~eel~~~F~~~D~d~-------dG~Is~~Ef~~~l~~l~~-~~~~~~~~~~~~~~l 238 (547)
+.|+..||.++-.-+. .+..+++.+++.|..|| ++.|+++-|+.+|...-+ ..++ ..|....
T Consensus 6 ~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~----~lc~hLF 75 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPE----DLCQHLF 75 (138)
T ss_dssp S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--H----HHHHHHH
T ss_pred eccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCH----HHHHHHH
Confidence 6788999988764321 24447777777775443 568999999999987543 2333 4566654
No 285
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=23.11 E-value=1.9e+02 Score=22.37 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=29.0
Q ss_pred HHHHHhcCCcchHHHHHHHHHHh--cCCCCCCcCHHHHHHHHHhhhc
Q 008959 179 SDLISAFGNQVAANKKEELFKAA--DKNGDGVVSVDELAALLALQQE 223 (547)
Q Consensus 179 ~~~l~~lg~~~~~eel~~~F~~~--D~d~dG~Is~~Ef~~~l~~l~~ 223 (547)
..++..+|. ++-+++..+++.+ +. +.-.+|.+|+.+++.....
T Consensus 3 ~gMLtN~gs-l~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~lv~ 47 (60)
T PF08672_consen 3 VGMLTNLGS-LPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRLVE 47 (60)
T ss_dssp HHHHHHH-S-EEHHHHHHHHHHH-GGG---TT--HHHHHHHHHHHHH
T ss_pred hHHhhcCCC-CCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHHHH
Confidence 456667776 8889999999998 33 4456899999999977543
No 286
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=22.85 E-value=1.4e+02 Score=31.23 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=7.1
Q ss_pred CCcCHHHHHHHHHh
Q 008959 207 GVVSVDELAALLAL 220 (547)
Q Consensus 207 G~Is~~Ef~~~l~~ 220 (547)
|.||.+|=.+++.+
T Consensus 301 G~itReeal~~v~~ 314 (343)
T TIGR03573 301 GRITREEAIELVKE 314 (343)
T ss_pred CCCCHHHHHHHHHH
Confidence 44555555555544
No 287
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=22.42 E-value=1.2e+02 Score=18.31 Aligned_cols=14 Identities=57% Similarity=0.779 Sum_probs=6.6
Q ss_pred cCCCCCCcCHHHHH
Q 008959 202 DKNGDGVVSVDELA 215 (547)
Q Consensus 202 D~d~dG~Is~~Ef~ 215 (547)
|.|+||.|+--++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34555555554443
No 288
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=22.22 E-value=2.6e+02 Score=32.50 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=56.5
Q ss_pred HHHHHHhhCCCCCchh----HHHHhhhcCCCCCChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH-------hcCC---
Q 008959 122 DSEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLIS-------AFGN--- 187 (547)
Q Consensus 122 l~~~F~~~D~d~dG~I----l~~ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~-------~lg~--- 187 (547)
+.-++++||+..+|.| |+-.+..+-. .+.++. ++.+|+.+-.++.-++ ...|-.+|. .+|+
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck-~~leek---~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aA 546 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCK-AHLEDK---YRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAA 546 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhc-chhHHH---HHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHh
Confidence 3446789999999998 4433332221 233444 7899999877776554 433444443 3332
Q ss_pred ---cchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008959 188 ---QVAANKKEELFKAADKNGDGVVSVDELAALLALQ 221 (547)
Q Consensus 188 ---~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l 221 (547)
..-+--++.+|+. .++.-.|++.+|...+...
T Consensus 547 fGgsNvepsvrsCF~~--v~~~pei~~~~f~dw~~~e 581 (966)
T KOG4286|consen 547 FGGSNIEPSVRSCFQF--VNNKPEIEAALFLDWMRLE 581 (966)
T ss_pred hcCCCCChHHHHHHHh--cCCCCcchHHHHHHHhccC
Confidence 2223357888883 3445578999998877654
No 289
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=20.88 E-value=2e+02 Score=32.46 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCcchHHHHHHHHHHhc---CCC--CCCcCHHHHHHHHH
Q 008959 150 PIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVAANKKEELFKAAD---KNG--DGVVSVDELAALLA 219 (547)
Q Consensus 150 ~~~~e~~~l~~~f~~~D~d~dG~Is~~Ef~~~l~~-lg~~~~~eel~~~F~~~D---~d~--dG~Is~~Ef~~~l~ 219 (547)
+...-...|.++|+..|.|.||.++-.|+..+-.. ++.++...+++.+-...+ .+| +..++..-|.-+..
T Consensus 189 lkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 189 LKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred ccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 33444567999999999999999999999998776 777777766555544432 332 34455555554443
No 290
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=20.85 E-value=2.6e+02 Score=21.56 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=19.8
Q ss_pred CCCceeeecCcCeEEeEEEEecCce
Q 008959 470 PQDYHRFHLPVSGIIEQFVDIPGCL 494 (547)
Q Consensus 470 p~dYHr~h~P~~G~v~~~~~i~G~~ 494 (547)
-.-.+..++|++|+|.+...-.|..
T Consensus 39 ~k~~~~i~ap~~G~v~~~~~~~g~~ 63 (73)
T cd06663 39 MKATSDVEAPKSGTVKKVLVKEGTK 63 (73)
T ss_pred CCeEEEEEcCCCEEEEEEEeCCCCE
Confidence 3346778999999999988777764
No 291
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=20.42 E-value=22 Score=41.94 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=30.0
Q ss_pred cccCCceEEEEEcccceEeeeecCCCCCCCchh
Q 008959 65 MKFKDKWLACVSLGEQTCRTAISDNTDKPIWNS 97 (547)
Q Consensus 65 ~~~~dd~~~~v~~g~~~frT~vi~~tLnP~Wne 97 (547)
+..-+||++.+.+-.|.-.|-++.++|+|+|++
T Consensus 223 k~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq 255 (1105)
T KOG1326|consen 223 KDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQ 255 (1105)
T ss_pred cccCCCchhhhhcccccceeEeecCcCCCCccc
Confidence 566678899999999999999999999999998
No 292
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=20.30 E-value=4.3e+02 Score=22.95 Aligned_cols=45 Identities=11% Similarity=0.286 Sum_probs=31.8
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008959 179 SDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQE 223 (547)
Q Consensus 179 ~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~~Ef~~~l~~l~~ 223 (547)
..++.-+...++.+|-..+.+..+.=.+|.|+......+++.+-.
T Consensus 56 ~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~ 100 (117)
T PF08349_consen 56 QHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLAR 100 (117)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 333333455677777777777777778888998888888876543
Done!