Query 008961
Match_columns 547
No_of_seqs 246 out of 499
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 15:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 99.9 4E-26 1.4E-30 204.2 12.4 106 1-109 17-127 (130)
2 2l7p_A Histone-lysine N-methyl 99.8 1.8E-19 6E-24 156.9 3.6 61 226-287 22-86 (100)
3 2e61_A Zinc finger CW-type PWW 99.7 4.7E-18 1.6E-22 139.1 3.3 51 226-277 12-67 (69)
4 4i1k_A B3 domain-containing tr 99.5 4.6E-14 1.6E-18 128.9 10.6 91 1-99 52-143 (146)
5 1yel_A AT1G16640; CESG, protei 99.3 5.5E-12 1.9E-16 108.0 8.6 87 1-97 14-100 (104)
6 4gut_A Lysine-specific histone 94.6 0.004 1.4E-07 69.6 -1.4 50 228-278 89-149 (776)
7 1na6_A Ecorii, restriction end 90.7 0.29 9.8E-06 51.7 5.9 84 1-85 24-123 (404)
8 1we9_A PHD finger family prote 86.4 0.34 1.1E-05 37.7 2.3 31 228-258 18-54 (64)
9 1wee_A PHD finger family prote 85.2 0.47 1.6E-05 38.0 2.6 30 229-258 28-62 (72)
10 2lv9_A Histone-lysine N-methyl 83.3 0.75 2.6E-05 39.2 3.2 33 227-259 37-73 (98)
11 3kqi_A GRC5, PHD finger protei 82.3 0.52 1.8E-05 38.1 1.7 31 228-258 21-57 (75)
12 3o70_A PHD finger protein 13; 82.0 0.7 2.4E-05 37.1 2.4 30 229-258 30-63 (68)
13 3o7a_A PHD finger protein 13 v 79.7 1.1 3.9E-05 33.7 2.7 29 229-257 15-47 (52)
14 2k16_A Transcription initiatio 77.4 1.6 5.5E-05 34.9 3.1 30 229-258 30-64 (75)
15 2kgg_A Histone demethylase jar 75.2 1.4 4.6E-05 33.4 2.0 31 227-257 13-49 (52)
16 2ri7_A Nucleosome-remodeling f 72.7 1.1 3.9E-05 40.7 1.3 32 228-259 19-56 (174)
17 2vpb_A Hpygo1, pygopus homolog 67.5 2.5 8.4E-05 33.7 2.0 15 227-241 19-34 (65)
18 1wep_A PHF8; structural genomi 64.9 2.5 8.5E-05 34.3 1.6 33 228-260 23-61 (79)
19 1wew_A DNA-binding family prot 60.5 9.7 0.00033 30.8 4.4 31 228-258 26-68 (78)
20 3o27_A Putative uncharacterize 60.4 12 0.0004 30.8 4.8 39 59-97 24-62 (68)
21 3kv5_D JMJC domain-containing 59.8 2 7E-05 46.0 0.3 32 228-259 48-85 (488)
22 1wem_A Death associated transc 59.8 4.3 0.00015 32.6 2.1 15 229-243 27-41 (76)
23 2rsd_A E3 SUMO-protein ligase 54.2 8.6 0.0003 30.4 3.0 31 228-258 20-61 (68)
24 3lqh_A Histone-lysine N-methyl 40.3 9.5 0.00032 36.0 1.4 15 230-244 19-33 (183)
25 2ku7_A MLL1 PHD3-CYP33 RRM chi 40.1 7 0.00024 32.8 0.4 10 232-241 2-11 (140)
26 2xb1_A Pygopus homolog 2, B-ce 35.1 17 0.00057 31.3 2.0 16 228-243 15-31 (105)
27 1weu_A Inhibitor of growth fam 34.3 49 0.0017 28.1 4.7 31 229-259 46-82 (91)
28 2g6q_A Inhibitor of growth pro 32.2 26 0.00088 27.5 2.5 29 230-258 22-56 (62)
29 1wen_A Inhibitor of growth fam 31.8 28 0.00097 27.9 2.7 30 230-259 27-62 (71)
30 2vb2_X Copper protein, cation 31.6 30 0.001 28.9 3.0 25 70-94 58-82 (88)
31 2k75_A Uncharacterized protein 31.4 90 0.0031 26.4 6.0 45 34-99 41-88 (106)
32 2qcp_X Cation efflux system pr 30.9 32 0.0011 28.2 3.0 24 70-93 50-73 (80)
33 3c6w_A P28ING5, inhibitor of g 29.7 28 0.00096 27.0 2.3 28 230-257 20-53 (59)
34 1n93_X P40 nucleoprotein; RNA 28.4 15 0.00053 37.4 0.7 17 363-379 160-176 (375)
35 1mvf_D MAZE protein, PEMI-like 28.0 49 0.0017 26.5 3.6 27 66-94 19-45 (82)
36 2p5d_A UPF0310 protein mjecl36 27.1 44 0.0015 30.2 3.4 35 64-100 30-69 (147)
37 2jmi_A Protein YNG1, ING1 homo 26.5 37 0.0013 28.8 2.6 29 230-258 37-71 (90)
38 4dok_A Similarity to chalcone- 26.5 36 0.0012 32.6 2.9 38 63-100 127-164 (208)
39 3ngh_A PDZ domain-containing p 20.7 1E+02 0.0035 24.8 4.2 48 35-83 5-53 (106)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.93 E-value=4e-26 Score=204.21 Aligned_cols=106 Identities=37% Similarity=0.724 Sum_probs=92.1
Q ss_pred CCCcCcCCCCCcEEeehhhhhhcCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCcceeec-CchhHhhhcCCCC
Q 008961 1 MLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE-GVTPCIQNMQLQA 76 (547)
Q Consensus 1 vLT~SDVg~lgRLVIPK~~AE~~FP~Ld~---~~G~~L~v~D~~Gk~W~FR~~yw~Nn~SR~YLLt-GWs~FVRsK~Lqa 76 (547)
+||+|||++++||+||+.+|+.|||.++. .+++.|.++|.+|+.|+|+|+|| +.+++|+|+ ||..||++|+|++
T Consensus 17 ~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt~GW~~FV~~~~L~~ 94 (130)
T 1wid_A 17 AVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLRA 94 (130)
T ss_dssp ECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEESSHHHHHHHTTCCT
T ss_pred EEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEcCChHHHHHHcCCCC
Confidence 59999999889999999999999999974 57899999999999999999999 456778885 9999999999999
Q ss_pred CCEEEEEEec-CCCeEEEEEEecCCCCCCccccc
Q 008961 77 GDIVTFSRLE-PEGKLVMGFRKASSASASDQDNE 109 (547)
Q Consensus 77 GDtVvF~R~e-~~GkL~IGvRRa~~~~~s~q~~~ 109 (547)
||+|+|++.+ ++++|+|++||+.... ++|.++
T Consensus 95 GD~~~F~~~~~~~~~l~I~~rr~~~~~-~~~~~~ 127 (130)
T 1wid_A 95 GDVVSFSRSNGQDQQLYIGWKSRSGSD-LDASGP 127 (130)
T ss_dssp TCEEEEEECCSSSCCEEEEEECCCSCS-SCC---
T ss_pred CCEEEEEEecCCCcEEEEEEEECCCCC-ccccCC
Confidence 9999999986 4578999999998755 455443
No 2
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=1.8e-19 Score=156.93 Aligned_cols=61 Identities=33% Similarity=0.793 Sum_probs=56.0
Q ss_pred CCCcCceEecCCcccccccCCCC----CCCCCcEeecCCCCCCCCCCCcccccChHHHHHHhCCCc
Q 008961 226 VGEKIQWVQCEDCSKWRKVPANA----RLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNN 287 (547)
Q Consensus 226 ~~e~~~WVQCD~C~KWRrLP~~~----~lP~~W~CsmN~WDp~~~sCsaPEE~~~~eld~ll~~~~ 287 (547)
.....+|||||.|+|||+||..+ .+|++|||+||+ |+.+++|++|||++++||+.+|+.+.
T Consensus 22 ~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~-D~~~nsCs~PEE~~~~ei~~~l~~~~ 86 (100)
T 2l7p_A 22 YSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNS-DKRFADCSKSQEMSNEEINEELGIGQ 86 (100)
T ss_dssp CSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSS-CSSSCSTTSCCSSCHHHHHHHHTCCC
T ss_pred CCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCC-CCCCCCCCCccCCCHHHHHHHhcccc
Confidence 34588999999999999999865 479999999998 99999999999999999999998876
No 3
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.69 E-value=4.7e-18 Score=139.14 Aligned_cols=51 Identities=35% Similarity=0.906 Sum_probs=46.9
Q ss_pred CCCcCceEecC--CcccccccCCCC---CCCCCcEeecCCCCCCCCCCCcccccChH
Q 008961 226 VGEKIQWVQCE--DCSKWRKVPANA---RLPSKWTCSGNLWDPERSVCSVAQELREE 277 (547)
Q Consensus 226 ~~e~~~WVQCD--~C~KWRrLP~~~---~lP~~W~CsmN~WDp~~~sCsaPEE~~~~ 277 (547)
.++..+||||| .|+|||+||..+ .+|++|||+||+ |+.+++|++|||.++.
T Consensus 12 ~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~-d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 12 FGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNT-DVQYNRCDIPEETWTG 67 (69)
T ss_dssp CCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCS-CGGGCSSSSCCCCCCC
T ss_pred CCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCC-CCccCCCCCCcccCCC
Confidence 46789999999 999999999986 689999999999 9999999999999764
No 4
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.51 E-value=4.6e-14 Score=128.95 Aligned_cols=91 Identities=24% Similarity=0.257 Sum_probs=77.4
Q ss_pred CCCcCcCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeecCchhHhhhcCCCCCCEE
Q 008961 1 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIV 80 (547)
Q Consensus 1 vLT~SDVg~lgRLVIPK~~AE~~FP~Ld~~~G~~L~v~D~~Gk~W~FR~~yw~Nn~SR~YLLtGWs~FVRsK~LqaGDtV 80 (547)
+|++|||.+..+|+||+.+++.|||.. ...|.++|. |+.|.|+|.|+. +++++..||..||++++|++||+|
T Consensus 52 ~l~~S~v~~~~~L~IP~~Fa~~~lp~~----~~~i~L~~~-gk~W~v~~~~~~---~~~~ls~GW~~Fv~dn~L~~GD~c 123 (146)
T 4i1k_A 52 VLRPSYLYRGCIMYLPSGFAEKYLSGI----SGFIKVQLA-EKQWPVRCLYKA---GRAKFSQGWYEFTLENNLGEGDVC 123 (146)
T ss_dssp ECCGGGSSTTCCEECCHHHHHHHCTTC----CSEEEEEET-TEEEEEEEEEET---TEEEECTTHHHHHHHTTCCTTCEE
T ss_pred EECchhcCCCcEEEeCHHHHHHhCCCC----CeEEEEEEC-CcEEEEEEEEeC---CcEEECCchHHHHHHcCCCCCCEE
Confidence 589999987678999999999999974 468889998 699999999982 366667799999999999999999
Q ss_pred EEEEecCCC-eEEEEEEecC
Q 008961 81 TFSRLEPEG-KLVMGFRKAS 99 (547)
Q Consensus 81 vF~R~e~~G-kL~IGvRRa~ 99 (547)
+|...+... .|.|.|-|+.
T Consensus 124 vFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 124 VFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp EEEECSSSSCEEEEEEECCC
T ss_pred EEEEecCCceEEEEEEEecc
Confidence 999986432 5888877764
No 5
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.30 E-value=5.5e-12 Score=107.98 Aligned_cols=87 Identities=13% Similarity=0.284 Sum_probs=70.0
Q ss_pred CCCcCcCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeecCchhHhhhcCCCCCCEE
Q 008961 1 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIV 80 (547)
Q Consensus 1 vLT~SDVg~lgRLVIPK~~AE~~FP~Ld~~~G~~L~v~D~~Gk~W~FR~~yw~Nn~SR~YLLtGWs~FVRsK~LqaGDtV 80 (547)
+|+++|. ..+|.||+..++.+.|.+ +..+.++|..|+.|.++|.++. .+.|+..||..||++++|++||.|
T Consensus 14 ~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~~---~~~~l~~GW~~Fv~~~~L~~GD~l 84 (104)
T 1yel_A 14 PFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKRG---EKVFLTVGWENFVKDNNLEDGKYL 84 (104)
T ss_dssp ECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEET---TEEEECTTHHHHHHHHTCCTTCEE
T ss_pred EECCCCc--cceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEEC---CcEEEccChHHHHHHcCCCCCCEE
Confidence 3667774 379999999998876553 4689999999999999999872 344566699999999999999999
Q ss_pred EEEEecCCCeEEEEEEe
Q 008961 81 TFSRLEPEGKLVMGFRK 97 (547)
Q Consensus 81 vF~R~e~~GkL~IGvRR 97 (547)
+|.... +..+.|-|=+
T Consensus 85 vF~~~~-~~~f~V~If~ 100 (104)
T 1yel_A 85 QFIYDR-DRTFYVIIYG 100 (104)
T ss_dssp EEEECS-SSEEEEEEEC
T ss_pred EEEEcC-CCeEEEEEEC
Confidence 998864 6677776543
No 6
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=94.58 E-value=0.004 Score=69.63 Aligned_cols=50 Identities=26% Similarity=0.721 Sum_probs=39.4
Q ss_pred CcCceEecC--CcccccccCCCC----CCCCCcEeecCCCCC-----CCCCCCcccccChHH
Q 008961 228 EKIQWVQCE--DCSKWRKVPANA----RLPSKWTCSGNLWDP-----ERSVCSVAQELREEQ 278 (547)
Q Consensus 228 e~~~WVQCD--~C~KWRrLP~~~----~lP~~W~CsmN~WDp-----~~~sCsaPEE~~~~e 278 (547)
.-+-||||- .|+|||+||... .++.+.+|.|-. +. .--.|+.||++--.+
T Consensus 89 ~l~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~ 149 (776)
T 4gut_A 89 QLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKP-NTAIKPETSDHCSLPEDLRVLE 149 (776)
T ss_dssp TSCCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCC-C-------CCGGGSCCCHHHHH
T ss_pred cCcHhhhcCcccccchhhCCCcCCCChhhhheeeccCcc-CcccccccCCCCCCCcccchhh
Confidence 458999999 999999999987 457899998864 22 356799999965555
No 7
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=90.68 E-value=0.29 Score=51.72 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=59.8
Q ss_pred CCCcCcCCCC----CcEEeehhhhhhcCCCCCC----CCCceEEEE--eCCCCeEEEEEEEcCC-----CCCcceeecCc
Q 008961 1 MLSASDAGRI----GRLVLPKKCAEAYFPPISQ----PEGLPLKVQ--DSKGKEWIFQFRFWPN-----NNSRMYVLEGV 65 (547)
Q Consensus 1 vLT~SDVg~l----gRLVIPK~~AE~~FP~Ld~----~~G~~L~v~--D~~Gk~W~FR~~yw~N-----n~SR~YLLtGW 65 (547)
.|++.|++.+ ..|.+|+..+..+||.|.. .+.+.+.++ |...-.+.++++|+ | ..+..|.|+.|
T Consensus 24 ~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twY-n~R~~~~tRnEyRLt~~ 102 (404)
T 1na6_A 24 RLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYY-NSAHFGKTRNEKRITRW 102 (404)
T ss_dssp ECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEE-CGGGTTSCCCEEEEECC
T ss_pred EcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEe-cccccCCCCCceEEeec
Confidence 3888899854 4899999778999998872 222334432 33344559999999 4 13457999988
Q ss_pred h-hHhhhcCCCCCCEEEEEEe
Q 008961 66 T-PCIQNMQLQAGDIVTFSRL 85 (547)
Q Consensus 66 s-~FVRsK~LqaGDtVvF~R~ 85 (547)
. .|.=.....+||.++|-+.
T Consensus 103 ~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 103 GRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp CTTSGGGCGGGTTCEEEEEEE
T ss_pred CCCCcccccCCCCCEEEEEEe
Confidence 5 5566688899999999865
No 8
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.42 E-value=0.34 Score=37.73 Aligned_cols=31 Identities=16% Similarity=0.568 Sum_probs=21.0
Q ss_pred CcCceEecCCcccccccCC-CC-----CCCCCcEeec
Q 008961 228 EKIQWVQCEDCSKWRKVPA-NA-----RLPSKWTCSG 258 (547)
Q Consensus 228 e~~~WVQCD~C~KWRrLP~-~~-----~lP~~W~Csm 258 (547)
....|||||.|..|=-+.= ++ ..++.|+|..
T Consensus 18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 3578999999999944321 11 2367898865
No 9
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.19 E-value=0.47 Score=38.02 Aligned_cols=30 Identities=30% Similarity=0.752 Sum_probs=20.9
Q ss_pred cCceEecCCcccccccCC---C--CCCCCCcEeec
Q 008961 229 KIQWVQCEDCSKWRKVPA---N--ARLPSKWTCSG 258 (547)
Q Consensus 229 ~~~WVQCD~C~KWRrLP~---~--~~lP~~W~Csm 258 (547)
...|||||.|..|--+.= . ..+|+.|+|..
T Consensus 28 g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~ 62 (72)
T 1wee_A 28 GERMLACDGCGVWHHTRCIGINNADALPSKFLCFR 62 (72)
T ss_dssp SSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHH
T ss_pred CCcEEECCCCCCccCCeeeccCccccCCCcEECCC
Confidence 347999999999954321 1 13578899854
No 10
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=83.29 E-value=0.75 Score=39.15 Aligned_cols=33 Identities=18% Similarity=0.672 Sum_probs=24.2
Q ss_pred CCcCceEecCCcccccccCC---C-CCCCCCcEeecC
Q 008961 227 GEKIQWVQCEDCSKWRKVPA---N-ARLPSKWTCSGN 259 (547)
Q Consensus 227 ~e~~~WVQCD~C~KWRrLP~---~-~~lP~~W~CsmN 259 (547)
.+...+||||.|..|--+.= . ..+|+.|+|..-
T Consensus 37 ~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C 73 (98)
T 2lv9_A 37 HDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERC 73 (98)
T ss_dssp SCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTT
T ss_pred cCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCC
Confidence 34678999999999965431 1 257889999664
No 11
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=82.31 E-value=0.52 Score=38.12 Aligned_cols=31 Identities=16% Similarity=0.443 Sum_probs=20.7
Q ss_pred CcCceEecCCccccccc-----CC-CCCCCCCcEeec
Q 008961 228 EKIQWVQCEDCSKWRKV-----PA-NARLPSKWTCSG 258 (547)
Q Consensus 228 e~~~WVQCD~C~KWRrL-----P~-~~~lP~~W~Csm 258 (547)
....|||||.|..|=-. .. .+..++.|+|..
T Consensus 21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~ 57 (75)
T 3kqi_A 21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPN 57 (75)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHH
T ss_pred CCCCEEEcCCCCCCEecccccccccccCCCCEEECCC
Confidence 35789999999999432 22 123347888854
No 12
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=82.03 E-value=0.7 Score=37.12 Aligned_cols=30 Identities=17% Similarity=0.700 Sum_probs=21.6
Q ss_pred cCceEecCCcccccccCCC-C---CCCCCcEeec
Q 008961 229 KIQWVQCEDCSKWRKVPAN-A---RLPSKWTCSG 258 (547)
Q Consensus 229 ~~~WVQCD~C~KWRrLP~~-~---~lP~~W~Csm 258 (547)
...+||||.|..|--+.=- + .+|+.|+|..
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~ 63 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQK 63 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECCC
Confidence 5679999999999654321 1 4678999853
No 13
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=79.65 E-value=1.1 Score=33.74 Aligned_cols=29 Identities=17% Similarity=0.737 Sum_probs=21.3
Q ss_pred cCceEecCCcccccccCCC-C---CCCCCcEee
Q 008961 229 KIQWVQCEDCSKWRKVPAN-A---RLPSKWTCS 257 (547)
Q Consensus 229 ~~~WVQCD~C~KWRrLP~~-~---~lP~~W~Cs 257 (547)
...+||||.|..|--+.=- + .+|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 4689999999999654321 1 457889885
No 14
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=77.40 E-value=1.6 Score=34.86 Aligned_cols=30 Identities=23% Similarity=0.713 Sum_probs=20.6
Q ss_pred cCceEecCCcccccc-----cCCCCCCCCCcEeec
Q 008961 229 KIQWVQCEDCSKWRK-----VPANARLPSKWTCSG 258 (547)
Q Consensus 229 ~~~WVQCD~C~KWRr-----LP~~~~lP~~W~Csm 258 (547)
...||+||.|..|=- |+......+.|||..
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~ 64 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPK 64 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEEChh
Confidence 458999999999952 333223347899953
No 15
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=75.18 E-value=1.4 Score=33.37 Aligned_cols=31 Identities=26% Similarity=0.812 Sum_probs=20.6
Q ss_pred CCcCceEecC-CcccccccCC-CC----CCCCCcEee
Q 008961 227 GEKIQWVQCE-DCSKWRKVPA-NA----RLPSKWTCS 257 (547)
Q Consensus 227 ~e~~~WVQCD-~C~KWRrLP~-~~----~lP~~W~Cs 257 (547)
.....||||| .|..|=-+.= ++ ..+++|+|.
T Consensus 13 ~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 13 KDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred CCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 3467899999 8999954422 12 124788884
No 16
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=72.74 E-value=1.1 Score=40.67 Aligned_cols=32 Identities=22% Similarity=0.574 Sum_probs=21.6
Q ss_pred CcCceEecCCccccccc---CCC---CCCCCCcEeecC
Q 008961 228 EKIQWVQCEDCSKWRKV---PAN---ARLPSKWTCSGN 259 (547)
Q Consensus 228 e~~~WVQCD~C~KWRrL---P~~---~~lP~~W~CsmN 259 (547)
+...|||||.|..|=-. ... ...++.|+|..-
T Consensus 19 ~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C 56 (174)
T 2ri7_A 19 ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQC 56 (174)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHH
T ss_pred CCCCEeECCCCCchhChhhcCCchhhccCccCeecCCC
Confidence 35679999999999332 111 145789999653
No 17
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=67.50 E-value=2.5 Score=33.72 Aligned_cols=15 Identities=33% Similarity=1.004 Sum_probs=13.2
Q ss_pred CCcCceEecC-Ccccc
Q 008961 227 GEKIQWVQCE-DCSKW 241 (547)
Q Consensus 227 ~e~~~WVQCD-~C~KW 241 (547)
.....||||| .|.+|
T Consensus 19 ~~~~~mI~CD~~C~~W 34 (65)
T 2vpb_A 19 NDDQDAILCEASCQKW 34 (65)
T ss_dssp CTTSCEEEBTTTTCCE
T ss_pred CCCCCeEecccCcccc
Confidence 4567999999 99999
No 18
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.93 E-value=2.5 Score=34.34 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=22.0
Q ss_pred CcCceEecCCccccccc---CCC---CCCCCCcEeecCC
Q 008961 228 EKIQWVQCEDCSKWRKV---PAN---ARLPSKWTCSGNL 260 (547)
Q Consensus 228 e~~~WVQCD~C~KWRrL---P~~---~~lP~~W~CsmN~ 260 (547)
....|||||.|..|=-. ... ...++.|+|..-.
T Consensus 23 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~ 61 (79)
T 1wep_A 23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCE 61 (79)
T ss_dssp SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTT
T ss_pred CCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcc
Confidence 36789999999999332 111 1346899996543
No 19
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.55 E-value=9.7 Score=30.85 Aligned_cols=31 Identities=35% Similarity=0.831 Sum_probs=21.8
Q ss_pred CcCceEecC--Cccccccc-----CCCC-----CCCCCcEeec
Q 008961 228 EKIQWVQCE--DCSKWRKV-----PANA-----RLPSKWTCSG 258 (547)
Q Consensus 228 e~~~WVQCD--~C~KWRrL-----P~~~-----~lP~~W~Csm 258 (547)
....||||| .|..|--+ +... ..|+.|||..
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~ 68 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEI 68 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCC
Confidence 557999999 99999542 2111 3578999964
No 20
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=60.45 E-value=12 Score=30.78 Aligned_cols=39 Identities=10% Similarity=0.330 Sum_probs=32.9
Q ss_pred ceeecCchhHhhhcCCCCCCEEEEEEecCCCeEEEEEEe
Q 008961 59 MYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 97 (547)
Q Consensus 59 ~YLLtGWs~FVRsK~LqaGDtVvF~R~e~~GkL~IGvRR 97 (547)
.|.++==.+++++.+++.||.+.+.-.+.+|+|++..+|
T Consensus 24 tyYInIPaeI~kaLgIk~gD~fel~ve~kdgeIvLcykR 62 (68)
T 3o27_A 24 TFYLLIPKDIAEALDIKPDDTFILNMEQKDGDIVLSYKR 62 (68)
T ss_dssp CEEEEECHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCcHHHHHHhCCCCCCEEEEEEecCCCeEEEEehh
Confidence 455554479999999999999999887669999999998
No 21
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=59.81 E-value=2 Score=46.05 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=21.6
Q ss_pred CcCceEecCCccccccc-----CCC-CCCCCCcEeecC
Q 008961 228 EKIQWVQCEDCSKWRKV-----PAN-ARLPSKWTCSGN 259 (547)
Q Consensus 228 e~~~WVQCD~C~KWRrL-----P~~-~~lP~~W~CsmN 259 (547)
....|||||.|..|=-. +.. ...++.|+|..-
T Consensus 48 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C 85 (488)
T 3kv5_D 48 VNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85 (488)
T ss_dssp TTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHH
T ss_pred CCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCC
Confidence 35789999999999432 211 134678998653
No 22
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.79 E-value=4.3 Score=32.57 Aligned_cols=15 Identities=20% Similarity=0.753 Sum_probs=12.6
Q ss_pred cCceEecCCcccccc
Q 008961 229 KIQWVQCEDCSKWRK 243 (547)
Q Consensus 229 ~~~WVQCD~C~KWRr 243 (547)
...|||||.|..|--
T Consensus 27 ~~~MI~Cd~C~~WfH 41 (76)
T 1wem_A 27 NRFMICCDRCEEWFH 41 (76)
T ss_dssp SSCEEECSSSCCEEE
T ss_pred CCCEEEeCCCCCcEe
Confidence 468999999999943
No 23
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=54.23 E-value=8.6 Score=30.36 Aligned_cols=31 Identities=26% Similarity=0.682 Sum_probs=21.7
Q ss_pred CcCceEecC--CcccccccCC--------C-CCCCCCcEeec
Q 008961 228 EKIQWVQCE--DCSKWRKVPA--------N-ARLPSKWTCSG 258 (547)
Q Consensus 228 e~~~WVQCD--~C~KWRrLP~--------~-~~lP~~W~Csm 258 (547)
+...+|||| .|..|--+.= . ...|+.|||..
T Consensus 20 ~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~ 61 (68)
T 2rsd_A 20 VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCEL 61 (68)
T ss_dssp CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHH
T ss_pred CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcC
Confidence 456899999 5999976431 1 14678999953
No 24
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=40.28 E-value=9.5 Score=36.02 Aligned_cols=15 Identities=27% Similarity=0.904 Sum_probs=12.6
Q ss_pred CceEecCCccccccc
Q 008961 230 IQWVQCEDCSKWRKV 244 (547)
Q Consensus 230 ~~WVQCD~C~KWRrL 244 (547)
..|||||.|..|=-.
T Consensus 19 ~~MIqCd~C~~W~H~ 33 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHS 33 (183)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCeEECCCCCcccch
Confidence 469999999999654
No 25
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=40.15 E-value=7 Score=32.81 Aligned_cols=10 Identities=40% Similarity=1.444 Sum_probs=8.9
Q ss_pred eEecCCcccc
Q 008961 232 WVQCEDCSKW 241 (547)
Q Consensus 232 WVQCD~C~KW 241 (547)
.||||.|..|
T Consensus 2 mi~c~~c~~w 11 (140)
T 2ku7_A 2 MMQCGKCDRW 11 (140)
T ss_dssp CCCCSCCSSC
T ss_pred ccccccCCCc
Confidence 6899999988
No 26
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=35.09 E-value=17 Score=31.26 Aligned_cols=16 Identities=31% Similarity=0.879 Sum_probs=12.8
Q ss_pred CcCceEecC-Ccccccc
Q 008961 228 EKIQWVQCE-DCSKWRK 243 (547)
Q Consensus 228 e~~~WVQCD-~C~KWRr 243 (547)
....||||| .|..|=-
T Consensus 15 ~~~~mi~Cdd~C~~WfH 31 (105)
T 2xb1_A 15 DDQDAILCEASCQKWFH 31 (105)
T ss_dssp TTSCEEECTTTTCCEEE
T ss_pred CCCCEEEecCCcccccc
Confidence 356799998 9999943
No 27
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=34.31 E-value=49 Score=28.07 Aligned_cols=31 Identities=23% Similarity=0.682 Sum_probs=19.8
Q ss_pred cCceEecCC--cc-cccccCC-CC--CCCCCcEeecC
Q 008961 229 KIQWVQCED--CS-KWRKVPA-NA--RLPSKWTCSGN 259 (547)
Q Consensus 229 ~~~WVQCD~--C~-KWRrLP~-~~--~lP~~W~CsmN 259 (547)
...+|+||. |. .|=-+.= ++ ...++|||..-
T Consensus 46 ~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C 82 (91)
T 1weu_A 46 YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 82 (91)
T ss_dssp CSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTT
T ss_pred CCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCc
Confidence 357999999 77 8943321 11 23479999653
No 28
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=32.24 E-value=26 Score=27.47 Aligned_cols=29 Identities=21% Similarity=0.730 Sum_probs=18.3
Q ss_pred CceEecCC--cc-cccccC---CCCCCCCCcEeec
Q 008961 230 IQWVQCED--CS-KWRKVP---ANARLPSKWTCSG 258 (547)
Q Consensus 230 ~~WVQCD~--C~-KWRrLP---~~~~lP~~W~Csm 258 (547)
..+|+||. |. .|=-+. ......++|||..
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~ 56 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPK 56 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHH
T ss_pred CCeeeeeCCCCCcccEecccCCcCcCCCCCEECcC
Confidence 47999999 65 894321 1113347899853
No 29
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=31.79 E-value=28 Score=27.93 Aligned_cols=30 Identities=23% Similarity=0.728 Sum_probs=19.5
Q ss_pred CceEecCC--cc-cccccCC-CC--CCCCCcEeecC
Q 008961 230 IQWVQCED--CS-KWRKVPA-NA--RLPSKWTCSGN 259 (547)
Q Consensus 230 ~~WVQCD~--C~-KWRrLP~-~~--~lP~~W~CsmN 259 (547)
..+|+||. |. .|=-+.= ++ ...++|||..-
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C 62 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 62 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTT
T ss_pred CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCC
Confidence 57999999 87 7943321 12 22489999653
No 30
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=31.60 E-value=30 Score=28.87 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=18.2
Q ss_pred hhcCCCCCCEEEEEEecCCCeEEEE
Q 008961 70 QNMQLQAGDIVTFSRLEPEGKLVMG 94 (547)
Q Consensus 70 RsK~LqaGDtVvF~R~e~~GkL~IG 94 (547)
.-.+|++||.|.|.-...+|.|.|-
T Consensus 58 ~l~~lk~Gd~V~F~~~~~~~~~~it 82 (88)
T 2vb2_X 58 KMSEIKTGDKVAFNFVQQGNLSLLQ 82 (88)
T ss_dssp EECCCCTTCEEEEEEEEETTEEEEE
T ss_pred hhhcCCCCCEEEEEEEEeCCEEEEE
Confidence 3578999999999665545666553
No 31
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=31.42 E-value=90 Score=26.36 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=31.3
Q ss_pred eEEEEeCCCCeEEEEEEEcCCCCCcceeecCchhHhhhcCCCCCCEEEEEEe---cCCCeEEEEEEecC
Q 008961 34 PLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL---EPEGKLVMGFRKAS 99 (547)
Q Consensus 34 ~L~v~D~~Gk~W~FR~~yw~Nn~SR~YLLtGWs~FVRsK~LqaGDtVvF~R~---e~~GkL~IGvRRa~ 99 (547)
.+.+-|.+| ..+++.| +.. |++||+|.|... .-.|.+.+-+-+..
T Consensus 41 ~~~l~DeTG---~I~~tlW--~~~----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 41 QGYIEDDTA---RIRISSF--GKQ----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEECSSC---EEEEEEE--SSC----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEcCCC---eEEEEEE--cCc----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 577788888 6888899 222 999999998743 24666666555443
No 32
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=30.87 E-value=32 Score=28.17 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=17.6
Q ss_pred hhcCCCCCCEEEEEEecCCCeEEE
Q 008961 70 QNMQLQAGDIVTFSRLEPEGKLVM 93 (547)
Q Consensus 70 RsK~LqaGDtVvF~R~e~~GkL~I 93 (547)
--.+|++||.|.|.-...+|.|.|
T Consensus 50 ~l~~lk~Gd~V~F~~~~~~~~~~i 73 (80)
T 2qcp_X 50 KMSEIKTGDKVAFNFVQQGNLSLL 73 (80)
T ss_dssp EECCCCTTCEEEEEEEEETTEEEE
T ss_pred hhhcCCCCCEEEEEEEEeCCEEEE
Confidence 357899999999966554566655
No 33
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=29.68 E-value=28 Score=26.96 Aligned_cols=28 Identities=21% Similarity=0.816 Sum_probs=17.9
Q ss_pred CceEecCC--cc-cccccCC-CC--CCCCCcEee
Q 008961 230 IQWVQCED--CS-KWRKVPA-NA--RLPSKWTCS 257 (547)
Q Consensus 230 ~~WVQCD~--C~-KWRrLP~-~~--~lP~~W~Cs 257 (547)
..+|+||. |. .|=-+.= ++ ...++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcccCCCCCEECc
Confidence 57999999 87 7943221 11 223789985
No 34
>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X*
Probab=28.35 E-value=15 Score=37.45 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=13.8
Q ss_pred ccchhhhhhhhhhHhhh
Q 008961 363 TCNVCLTVKRRFHTLML 379 (547)
Q Consensus 363 ~c~vc~tv~rrf~tlm~ 379 (547)
.|.--..|||||||||.
T Consensus 160 I~t~s~QvqrrFKamMa 176 (375)
T 1n93_X 160 IKAGAEQIKKRFKTMMA 176 (375)
T ss_dssp HHSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH
Confidence 35566899999999984
No 35
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=28.04 E-value=49 Score=26.51 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=22.5
Q ss_pred hhHhhhcCCCCCCEEEEEEecCCCeEEEE
Q 008961 66 TPCIQNMQLQAGDIVTFSRLEPEGKLVMG 94 (547)
Q Consensus 66 s~FVRsK~LqaGDtVvF~R~e~~GkL~IG 94 (547)
..|++..+|.+||.|.|... +|.++|-
T Consensus 19 k~~~~~lgl~~gd~v~i~~~--~~~iii~ 45 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLV--DGKLIIE 45 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEE--TTEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEEE--CCEEEEE
Confidence 47899999999999999874 6777764
No 36
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=27.14 E-value=44 Score=30.17 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=24.6
Q ss_pred CchhHhhhcCCCCCCEEEEE-----EecCCCeEEEEEEecCC
Q 008961 64 GVTPCIQNMQLQAGDIVTFS-----RLEPEGKLVMGFRKASS 100 (547)
Q Consensus 64 GWs~FVRsK~LqaGDtVvF~-----R~e~~GkL~IGvRRa~~ 100 (547)
+...|+| ..+.||.|+|| .....+.=++|+=+=.+
T Consensus 30 ~arn~lr--~Mk~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~ 69 (147)
T 2p5d_A 30 RYKNTIN--KVKVGDKLIIYEIQRSGKDYKPPYIRGVYEVVS 69 (147)
T ss_dssp GGHHHHT--TCCTTCEEEEEECCBCSTTCBCCEEEEEEEECS
T ss_pred HHHHHHH--hCCCCCEEEEEEecccCCCCCCCEEEEEEEEec
Confidence 3467887 79999999999 43333567788766444
No 37
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=26.49 E-value=37 Score=28.76 Aligned_cols=29 Identities=24% Similarity=0.538 Sum_probs=18.0
Q ss_pred CceEecCCcc---cccccCC-CC--CCCCCcEeec
Q 008961 230 IQWVQCEDCS---KWRKVPA-NA--RLPSKWTCSG 258 (547)
Q Consensus 230 ~~WVQCD~C~---KWRrLP~-~~--~lP~~W~Csm 258 (547)
..+|+||.|. .|=-+.= ++ ...+.|||..
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~ 71 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSK 71 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSH
T ss_pred CCEEEecCCCCccccCcCccCCCCcCCCCCccCCh
Confidence 4699999966 8943321 11 2236899854
No 38
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=26.48 E-value=36 Score=32.58 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=30.9
Q ss_pred cCchhHhhhcCCCCCCEEEEEEecCCCeEEEEEEecCC
Q 008961 63 EGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASS 100 (547)
Q Consensus 63 tGWs~FVRsK~LqaGDtVvF~R~e~~GkL~IGvRRa~~ 100 (547)
.....|++.+.|..||.|.|.+..+.|.|.|.+.+.-.
T Consensus 127 ~~f~~~F~~~~~~~G~~I~~~~~p~~G~L~i~~s~~G~ 164 (208)
T 4dok_A 127 EKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGK 164 (208)
T ss_dssp HHHHHHHHTCEECTTCEEEEEECSSSCCEEEEEECTTS
T ss_pred HHHHHHhccCCCCCCCEEEEEEeCCCCeEEEEEEeCCE
Confidence 35567778889999999999997656999999986544
No 39
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=20.71 E-value=1e+02 Score=24.80 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=30.4
Q ss_pred EEEEeCCCCeEEEEEEEcCCCCCcceeec-CchhHhhhcCCCCCCEEEEE
Q 008961 35 LKVQDSKGKEWIFQFRFWPNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFS 83 (547)
Q Consensus 35 L~v~D~~Gk~W~FR~~yw~Nn~SR~YLLt-GWs~FVRsK~LqaGDtVvF~ 83 (547)
+.+....|..|-|....-. .....|+.. -...-....+|++||.|+-.
T Consensus 5 v~l~~~~~~~~G~~l~~~~-~~~g~~V~~V~~~spA~~aGl~~GD~I~~i 53 (106)
T 3ngh_A 5 SKLSKQEGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKAGLLDGDRVLRI 53 (106)
T ss_dssp EEEECCTTCCCCCEEECCT-TCCSCEEECCCTTSHHHHTTCCTTCEEEEE
T ss_pred EEEEeCCCCeeCEEEEEEe-CCCCEEEEEeCCCCHHHHcCCCCCCEEEEE
Confidence 4555556777888877653 223455554 33445566789999998765
Done!