Query 008962
Match_columns 547
No_of_seqs 206 out of 1533
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 15:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f35_D Transporter, NADC famil 100.0 1.3E-49 4.6E-54 428.6 35.3 385 28-545 48-443 (449)
2 4f35_D Transporter, NADC famil 99.9 1.4E-21 4.8E-26 210.0 18.7 170 28-198 272-443 (449)
3 3tds_E Formate/nitrite transpo 17.2 6.7E+02 0.023 23.9 14.1 38 48-85 98-135 (268)
4 2j5d_A BNIP3 TM, BCL2/adenovir 16.6 2.8E+02 0.0094 19.2 5.1 36 171-206 7-42 (45)
5 3s8f_C Cytochrome C oxidase po 8.1 3.1E+02 0.011 17.8 2.8 23 3-25 1-23 (34)
6 3arc_I Photosystem II reaction 6.4 3E+02 0.01 18.2 2.1 18 105-122 12-29 (38)
7 3jxo_A TRKA-N domain protein; 4.4 1.7E+02 0.0058 22.2 -0.1 35 292-327 30-67 (86)
8 2l16_A SEC-independent protein 3.8 8.4E+02 0.029 18.7 3.5 27 370-396 5-31 (78)
9 1m56_D Cytochrome C oxidase; m 3.8 5.7E+02 0.019 18.0 2.3 18 523-540 27-44 (51)
10 2iub_A CORA, divalent cation t 3.7 2.5E+02 0.0086 28.0 0.4 10 183-192 337-346 (363)
No 1
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=100.00 E-value=1.3e-49 Score=428.55 Aligned_cols=385 Identities=17% Similarity=0.202 Sum_probs=294.8
Q ss_pred CCCccchHHHHHHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcC-CchhHHHHH
Q 008962 28 VPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKSR-GPKDLLCRI 106 (547)
Q Consensus 28 ~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~~-~~~~ll~~i 106 (547)
.+.+|+. ++++++.+++.++|+++++|++++++++++++++|+|+++.++++||+.+++|.++.++.+ +++++++.+
T Consensus 48 te~iP~~--vtall~~~l~~l~gv~~~~~a~~~~~~~~i~li~g~~~la~al~~tGl~~riA~~il~~~g~~~~~l~~~~ 125 (449)
T 4f35_D 48 TEALHVT--VTAILVPVMAVFFGIFETQAALNNFANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKMSVAVFML 125 (449)
T ss_dssp TTSSCSH--HHHHHHHHHHHHTTSSCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCSCTHHHHHHH
T ss_pred hccccHH--HHHHHHHHHHHHHCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3455675 7799999999999999999999999999999999999999999999999999999988766 578888999
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCch-----HHHHHHHHHHhhhccccccCcccchheeecCCCChHHHH
Q 008962 107 CLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPH-----PFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFL 181 (547)
Q Consensus 107 ~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~-----~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~ 181 (547)
++.++++|+|+||+++++++.|++.++|++.+.+|. ++++++++++|+||++||+|+|+|++..+..+++|.||+
T Consensus 126 ~~~~~~lS~~isn~a~~~~~~Pi~~~i~~~~~~~~~~~~~~~lll~~~~aa~igg~~t~ig~~~N~i~~~~~~~~f~~~~ 205 (449)
T 4f35_D 126 FGVTALLSMWISNTATAAMMLPLVLGVLSKVDADKQRSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSFTDWM 205 (449)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHHHSCSCCCSSCCSSTTTTHHHHHHHHHHHHSSSSSSSHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHhchHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhhcccCcCCCcccccccccccHHHhh
Confidence 999999999999999999999999999999998874 588999999999999999999999999988999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhhHHhhhcccccccCCCccccccccccccchhhhhhhcccCCCC
Q 008962 182 IGILPAMFVGVAVNALILLTMYWKLLNSHKDEEDATAEVVAEEDVTSHRFSPATMSHFTSLNSQEWNSRLESMSLQNSPN 261 (547)
Q Consensus 182 ~~~lp~~iv~~~v~~~~~~~~~~~lLp~~~~~~~~~~~~~~e~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 261 (547)
..++|+.++.+++...++ ++..|++.+. .+| . .+.
T Consensus 206 ~~~~p~~li~l~~~~~~l----~~~~~~~~~~---~~~----~------------------~~~---------------- 240 (449)
T 4f35_D 206 KFGLPTAMMMLPMAIAIL----YFLLKPTLNG---MFE----L------------------DRA---------------- 240 (449)
T ss_dssp HHHHHHHHHHHHHHHHHH----HTTC------------------------------------------------------
T ss_pred hhcCchHHHHHHHHHHHH----HHHhcccccc---cch----h------------------hcc----------------
Confidence 999999888766543332 2333211000 000 0 000
Q ss_pred CCCCCchhhhhhhhccccccchhccCCCcchhhhhhcccccccccCCcccccCCCCCcccccchhhhhHHHhhccccccc
Q 008962 262 VNGNGSHAETLRNRTSLVENEINRVSSGTFESARITNESKEVSTDGGSQRREETVPSRGIGSVITLVNVLLRQLSRGKES 341 (547)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~l~~~~~~~~~~~~~~ 341 (547)
+ .+. +
T Consensus 241 -----------~------------------------------------~~~--------------------------~-- 245 (449)
T 4f35_D 241 -----------P------------------------------------VNW--------------------------D-- 245 (449)
T ss_dssp ------------------------------------------------CCC--------------------------C--
T ss_pred -----------c------------------------------------hhh--------------------------h--
Confidence 0 000 0
Q ss_pred cchhhHHHHHHHH-HHHHHHHHHHHHHh-CC--cHHHHHHHHHHHHHHhcCCChHHHHhhcChhHHHHHHHHHHHHHHHH
Q 008962 342 LSSEWKRVLRKSC-VYLITLGMLVSLLM-GL--NMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFN 417 (547)
Q Consensus 342 ~~~~~~~~~~~~~-~~~i~~~~i~~~~~-gi--~~~~~al~~a~~l~~~~~~~~~~~~~~idw~~ll~f~glf~l~~al~ 417 (547)
..+.+....... ..+........... +. +...+++.++.++...++.+.||+.+++||+++++|+|+|.++++++
T Consensus 246 -~~~~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~val~~~~ll~~~~~l~~~~~~~~i~W~~l~~~~g~~~l~~~l~ 324 (449)
T 4f35_D 246 -KGKVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILMLSFARVVHWKEIQKTADWGVLLLFGGGLCLSNVLK 324 (449)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHhhhhhccchhhhhcccCchHHHHhhhHHHHhHHHH
Confidence 000011000111 11111111111122 22 34566777777788889999999999999999999999999999999
Q ss_pred HhCHHHHHHHHhhhhhh-cchhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcC
Q 008962 418 KTGIPSALWEFMEPYAE-IDHVGGIAVLAAVILVLSNLASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVAGN 496 (547)
Q Consensus 418 ~tG~~~~ia~~l~~~~~-~~~~~~~~~l~~v~~~lS~~isN~p~~~ll~P~ia~~~a~~~~~~~~~~~~~l~~~~~~gg~ 496 (547)
+||+.+++++.+.+..+ .+.......+..++.++|+|+||+|+++++.| +....++..|.||. .+...+..++++|+
T Consensus 325 ~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ls~f~sn~a~~~~l~P-i~~~~a~~~g~~p~-~~~~~~~~~~s~~~ 402 (449)
T 4f35_D 325 QTGTSVFLANALSDMVSHMGIFVVILVVATFVVFLTEFASNTASAALLIP-VFATVAEAFGMSPV-LLSVLIAVAASCAF 402 (449)
T ss_dssp HHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSEETEECCHHHHHHHHHH-HHHHHHHHTTCCSH-HHHHHHHHHHHCCC
T ss_pred hcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHHHHHcCCCHH-HHHHHHHHHHHHHh
Confidence 99999999999876433 22222233344456678999999999999999 56788888898875 55556666778899
Q ss_pred hhhhhhhhhHHHHhccccCCCCCceeehhhhHhhhhHHHHHHHHHHhhh
Q 008962 497 LSLVGSAANLIVCEQAHRAPHLGYTLSFWNHLKFGVPSTLIVTAIGLPL 545 (547)
Q Consensus 497 ~TpiGs~aNliv~~~~~~~~~~gy~i~f~df~k~G~p~~li~~iv~~~~ 545 (547)
+||+|+++|.++++ .|+| +|+||+|.|+|+++++.++...+
T Consensus 403 ~~p~~t~~n~i~~g------~g~~--~~~d~~k~G~~~~~~~~~v~~~~ 443 (449)
T 4f35_D 403 MLPVATPPNAIVFA------SGHI--KQSEMMRVGLYLNIACIGLLTAI 443 (449)
T ss_dssp SSSSSSHHHHHHCS------SGGG--GTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHh------cCCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 4666 59999999999999988776543
No 2
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=99.87 E-value=1.4e-21 Score=210.02 Aligned_cols=170 Identities=15% Similarity=0.152 Sum_probs=150.7
Q ss_pred CCCccchHHHHHHHHHHHHHHHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-C-CchhHHHH
Q 008962 28 VPFLPIGRTAGSLLGAMLMVIFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMFKYLGRMLSWKS-R-GPKDLLCR 105 (547)
Q Consensus 28 ~~~~pi~~~~~al~~~~~l~l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~~~ia~~i~~~~-~-~~~~ll~~ 105 (547)
....+...+.+++.++.++..+|++++||+.++++|+++++++|++.++.++++||+.+++++.+.... + ++...+..
T Consensus 272 ~~~~~~~~~~val~~~~ll~~~~~l~~~~~~~~i~W~~l~~~~g~~~l~~~l~~sG~~~~la~~l~~~~~~~~~~~~~~~ 351 (449)
T 4f35_D 272 LGGFKSFDTLVALGAILMLSFARVVHWKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHMGIFVVILV 351 (449)
T ss_dssp TCCCSSHHHHHHHHHHHHHHHTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred cccccchhHHHHHHHHHHhhhhhccchhhhhcccCchHHHHhhhHHHHhHHHHhcCCHHHHHHHHhhhcccchHHHHHHH
Confidence 344445556778888889999999999999999999999999999999999999999999999987543 3 34566667
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhccccccCcccchheeecCCCChHHHHHhHH
Q 008962 106 ICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIPFGKFLIGIL 185 (547)
Q Consensus 106 i~~~~~~lS~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~aa~~Gg~~TpiG~p~Nliv~~~~~~~f~~f~~~~l 185 (547)
++.++.++|.|+||++++.+++|++.++|++.|.+|.++.++.+++++. +++||+|+|+|+++++.++++++||+|.|+
T Consensus 352 ~~~~~~~ls~f~sn~a~~~~l~Pi~~~~a~~~g~~p~~~~~~~~~~~s~-~~~~p~~t~~n~i~~g~g~~~~~d~~k~G~ 430 (449)
T 4f35_D 352 VATFVVFLTEFASNTASAALLIPVFATVAEAFGMSPVLLSVLIAVAASC-AFMLPVATPPNAIVFASGHIKQSEMMRVGL 430 (449)
T ss_dssp HHHTTSEETEECCHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHC-CCSSSSSSHHHHHHCSSGGGGTHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HhHhhhhhHHHHHHHhcCCCCHHHHHHHHH
Confidence 7777888999999999999999999999999999999999999999996 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008962 186 PAMFVGVAVNALI 198 (547)
Q Consensus 186 p~~iv~~~v~~~~ 198 (547)
|..++++++...+
T Consensus 431 ~~~~~~~~v~~~~ 443 (449)
T 4f35_D 431 YLNIACIGLLTAI 443 (449)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888765443
No 3
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=17.16 E-value=6.7e+02 Score=23.94 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=27.6
Q ss_pred HHccCChHHHHhcCChhHHHHHHHHHHHHHHHHHhcHH
Q 008962 48 IFQVITPDQAYAAIDLPILGLLFGTMVVSVYLESADMF 85 (547)
Q Consensus 48 l~gv~~~~~a~~~~~~~~i~~l~~~~il~~~l~~sG~~ 85 (547)
+-|.++..+.++...+..+.=+.|.+.++..+..+|.+
T Consensus 98 ~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~ 135 (268)
T 3tds_E 98 LNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLV 135 (268)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 45667777777776666666677777788888888876
No 4
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=16.56 E-value=2.8e+02 Score=19.18 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=25.2
Q ss_pred ecCCCChHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 008962 171 VQSKIPFGKFLIGILPAMFVGVAVNALILLTMYWKL 206 (547)
Q Consensus 171 ~~~~~~f~~f~~~~lp~~iv~~~v~~~~~~~~~~~l 206 (547)
-.+++-..||.+...|..+..=++...+-+++.+|+
T Consensus 7 Kkggi~sa~flk~~~psll~shiL~~GlgIyIGkRL 42 (45)
T 2j5d_A 7 KKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRL 42 (45)
T ss_dssp CCCSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCeeehHHHHHHhhHHHHHHHHHhcceEEeeeee
Confidence 345677789999999988777666655444555554
No 5
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=8.07 E-value=3.1e+02 Score=17.76 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=13.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHh
Q 008962 3 MASTVKVVLGSIAFAIFWVMAVF 25 (547)
Q Consensus 3 ~~~~~k~~~a~~~~~~~~~~~~~ 25 (547)
||++-|-+++....+...+.+.|
T Consensus 1 ~E~~l~GTl~~V~ilg~~I~i~W 23 (34)
T 3s8f_C 1 MEEKPKGALAVILVLTLTILVFW 23 (34)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccceehHHHHHHHHHHHHH
Confidence 67788888887666555554444
No 6
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=6.43 E-value=3e+02 Score=18.20 Aligned_cols=18 Identities=6% Similarity=0.148 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhchhhHH
Q 008962 105 RICLISAISSALFTNDTS 122 (547)
Q Consensus 105 ~i~~~~~~lS~flsN~~~ 122 (547)
++++++.+.=.|++||+.
T Consensus 12 V~ffvsLFiFGfLsnDP~ 29 (38)
T 3arc_I 12 VTFFVLLFVFGFLSGDPA 29 (38)
T ss_dssp HHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHccccCCCCC
Confidence 444555666778888873
No 7
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=4.44 E-value=1.7e+02 Score=22.16 Aligned_cols=35 Identities=14% Similarity=-0.148 Sum_probs=19.1
Q ss_pred hhhhhhcccccccccCCcccccCC---CCCcccccchhh
Q 008962 292 ESARITNESKEVSTDGGSQRREET---VPSRGIGSVITL 327 (547)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~gd~l 327 (547)
++++++++++ +..+.++.|.++. ..+..+++||.+
T Consensus 30 k~l~el~~~~-~~~i~~I~R~~~~~~p~~~~~l~~GD~l 67 (86)
T 3jxo_A 30 KKLKDLPLPR-DSIIAAIVRGGVLVVPRGDTEILSGDKL 67 (86)
T ss_dssp CBGGGSCCCS-SEEEEEEEETTEEECCCTTCBCCTTCEE
T ss_pred CCHHHCCCCC-CCEEEEEEECCEEECCCCCCEECCCCEE
Confidence 5666666553 4445666665433 133446777744
No 8
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=3.83 E-value=8.4e+02 Score=18.65 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=13.9
Q ss_pred CcHHHHHHHHHHHHHHhcCCChHHHHh
Q 008962 370 LNMSWTAITAALALVVLDFKDARPSLE 396 (547)
Q Consensus 370 i~~~~~al~~a~~l~~~~~~~~~~~~~ 396 (547)
+...-..+++.++++++|..+.+++.+
T Consensus 5 ig~~ElliIlvVaLlvfGpkkLP~l~r 31 (78)
T 2l16_A 5 IGIPGLILIFVIALIIFGPSKLPEIGR 31 (78)
T ss_dssp SCHHHHHHHHHHHHHHSCTTTHHHHHH
T ss_pred CCHHHHHHHHHHHhheeCccHhHHHHH
Confidence 333334444555566666666555543
No 9
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=3.76 E-value=5.7e+02 Score=18.04 Aligned_cols=18 Identities=6% Similarity=0.104 Sum_probs=10.0
Q ss_pred ehhhhHhhhhHHHHHHHH
Q 008962 523 SFWNHLKFGVPSTLIVTA 540 (547)
Q Consensus 523 ~f~df~k~G~p~~li~~i 540 (547)
.|-.+.|+|....+..++
T Consensus 27 gFi~~~k~gt~~~~~~ll 44 (51)
T 1m56_D 27 GFVRMVTWAAVVIVAALI 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666777554444433
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=3.65 E-value=2.5e+02 Score=27.96 Aligned_cols=10 Identities=10% Similarity=0.042 Sum_probs=3.5
Q ss_pred hHHHHHHHHH
Q 008962 183 GILPAMFVGV 192 (547)
Q Consensus 183 ~~lp~~iv~~ 192 (547)
+|.|.+++.+
T Consensus 337 ~Gy~~~l~~m 346 (363)
T 2iub_A 337 WGYPVVLAVM 346 (363)
T ss_dssp --CHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555444333
Done!