Query 008963
Match_columns 547
No_of_seqs 287 out of 661
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 18:44:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4698 Uncharacterized conser 100.0 5E-83 1.1E-87 675.2 19.7 443 58-537 17-472 (475)
2 PF04577 DUF563: Protein of un 100.0 4.2E-27 9.1E-32 225.4 19.5 198 225-473 1-204 (206)
3 COG4421 Capsular polysaccharid 99.7 5.1E-16 1.1E-20 158.9 17.7 202 215-475 122-329 (368)
4 cd05212 NAD_bind_m-THF_DH_Cycl 78.7 9.7 0.00021 35.6 7.8 70 367-444 28-98 (140)
5 PF02882 THF_DHG_CYH_C: Tetrah 77.1 10 0.00022 36.4 7.6 70 368-445 37-107 (160)
6 PRK14178 bifunctional 5,10-met 75.2 9.4 0.0002 39.9 7.4 72 367-446 152-224 (279)
7 cd00316 Oxidoreductase_nitroge 70.9 17 0.00037 38.6 8.4 98 365-467 150-251 (399)
8 cd01971 Nitrogenase_VnfN_like 67.6 10 0.00022 41.5 5.9 100 366-468 154-261 (427)
9 PRK14188 bifunctional 5,10-met 64.6 25 0.00054 37.0 7.8 71 367-445 158-229 (296)
10 cd02696 MurNAc-LAA N-acetylmur 58.7 27 0.00058 32.7 6.3 47 386-432 33-82 (172)
11 PRK14194 bifunctional 5,10-met 58.5 38 0.00082 35.9 7.9 72 367-446 159-231 (301)
12 PRK14179 bifunctional 5,10-met 57.5 37 0.00081 35.6 7.6 71 367-445 158-229 (284)
13 cd01080 NAD_bind_m-THF_DH_Cycl 56.8 23 0.00051 34.0 5.6 75 366-448 43-119 (168)
14 cd01967 Nitrogenase_MoFe_alpha 56.2 58 0.0013 35.0 9.1 97 366-467 159-258 (406)
15 cd01972 Nitrogenase_VnfE_like 55.8 27 0.00059 38.1 6.6 100 366-468 160-266 (426)
16 PF01520 Amidase_3: N-acetylmu 55.4 19 0.00042 33.7 4.7 46 387-432 33-81 (175)
17 TIGR02883 spore_cwlD N-acetylm 53.4 36 0.00079 32.9 6.4 47 386-432 34-97 (189)
18 PRK14175 bifunctional 5,10-met 51.9 39 0.00084 35.5 6.6 72 367-446 158-230 (286)
19 cd01980 Chlide_reductase_Y Chl 50.7 42 0.0009 36.7 7.0 94 367-468 159-254 (416)
20 PRK10319 N-acetylmuramoyl-l-al 50.0 32 0.00069 36.1 5.7 57 387-448 91-150 (287)
21 TIGR02853 spore_dpaA dipicolin 49.6 73 0.0016 33.1 8.3 57 409-470 200-259 (287)
22 COG3959 Transketolase, N-termi 49.4 27 0.00059 35.6 4.8 49 368-419 172-226 (243)
23 PF00148 Oxidored_nitro: Nitro 48.5 30 0.00066 37.0 5.4 98 365-466 142-243 (398)
24 PF05222 AlaDh_PNT_N: Alanine 48.2 1.2E+02 0.0027 28.0 8.7 94 378-475 10-117 (136)
25 PRK14190 bifunctional 5,10-met 47.9 58 0.0013 34.2 7.2 71 367-445 158-229 (284)
26 PRK08306 dipicolinate synthase 45.9 74 0.0016 33.2 7.7 81 387-472 167-262 (296)
27 PRK14191 bifunctional 5,10-met 45.8 60 0.0013 34.1 6.9 70 367-446 157-229 (285)
28 PRK14170 bifunctional 5,10-met 43.5 75 0.0016 33.4 7.2 71 367-445 157-228 (284)
29 PRK14189 bifunctional 5,10-met 43.1 73 0.0016 33.5 7.0 71 367-445 158-229 (285)
30 PRK08306 dipicolinate synthase 42.2 1.1E+02 0.0023 32.0 8.1 82 385-473 15-121 (296)
31 PF13271 DUF4062: Domain of un 41.3 66 0.0014 27.0 5.3 44 386-429 17-63 (83)
32 PLN02897 tetrahydrofolate dehy 40.6 83 0.0018 34.0 7.1 71 367-445 214-285 (345)
33 cd01981 Pchlide_reductase_B Pc 40.3 61 0.0013 35.4 6.3 101 366-469 161-266 (430)
34 PRK14169 bifunctional 5,10-met 39.5 96 0.0021 32.6 7.3 70 368-445 157-227 (282)
35 PRK14177 bifunctional 5,10-met 39.4 98 0.0021 32.6 7.3 71 367-445 159-230 (284)
36 PRK14172 bifunctional 5,10-met 39.0 98 0.0021 32.5 7.2 70 368-445 159-229 (278)
37 PRK02910 light-independent pro 38.5 81 0.0018 35.6 7.0 101 365-468 156-261 (519)
38 PRK14182 bifunctional 5,10-met 37.9 1.1E+02 0.0023 32.2 7.3 71 367-445 157-228 (282)
39 PRK14171 bifunctional 5,10-met 37.9 1E+02 0.0023 32.4 7.2 70 368-445 160-230 (288)
40 PRK14183 bifunctional 5,10-met 37.5 1.1E+02 0.0023 32.2 7.2 69 368-446 158-229 (281)
41 PF00389 2-Hacid_dh: D-isomer 37.4 73 0.0016 28.6 5.4 77 385-469 9-86 (133)
42 CHL00076 chlB photochlorophyll 37.2 1.3E+02 0.0029 33.9 8.5 101 365-468 161-266 (513)
43 PRK10792 bifunctional 5,10-met 36.7 1.1E+02 0.0024 32.1 7.2 72 367-446 159-231 (285)
44 PLN02616 tetrahydrofolate dehy 35.6 1.1E+02 0.0023 33.4 7.0 70 368-445 232-302 (364)
45 PRK14186 bifunctional 5,10-met 35.2 1.2E+02 0.0026 32.1 7.2 70 368-445 159-229 (297)
46 COG0190 FolD 5,10-methylene-te 35.2 93 0.002 32.8 6.3 70 366-445 155-227 (283)
47 TIGR02667 moaB_proteo molybden 35.1 1.1E+02 0.0024 29.1 6.4 72 367-438 4-83 (163)
48 PRK14173 bifunctional 5,10-met 35.0 1.2E+02 0.0026 32.0 7.1 71 367-445 155-226 (287)
49 PRK14166 bifunctional 5,10-met 34.6 1.2E+02 0.0027 31.8 7.1 71 367-445 157-228 (282)
50 cd01079 NAD_bind_m-THF_DH NAD 34.1 90 0.0019 31.2 5.7 75 367-445 62-155 (197)
51 PRK14180 bifunctional 5,10-met 32.8 1E+02 0.0023 32.3 6.2 71 367-445 158-229 (282)
52 cd03129 GAT1_Peptidase_E_like 32.4 1.5E+02 0.0032 29.0 7.0 64 366-429 28-91 (210)
53 cd01976 Nitrogenase_MoFe_alpha 32.1 77 0.0017 34.7 5.4 97 367-468 172-271 (421)
54 PRK14181 bifunctional 5,10-met 32.0 1.4E+02 0.0031 31.4 7.1 71 367-445 153-228 (287)
55 PRK13337 putative lipid kinase 31.7 3.7E+02 0.0079 27.8 10.1 69 382-450 19-93 (304)
56 PRK14174 bifunctional 5,10-met 31.5 1.5E+02 0.0032 31.4 7.1 71 367-445 159-234 (295)
57 PF03193 DUF258: Protein of un 31.1 76 0.0017 30.5 4.6 53 385-437 2-58 (161)
58 PF11595 DUF3245: Protein of u 31.1 23 0.0005 33.8 1.0 14 30-43 125-138 (149)
59 PLN02516 methylenetetrahydrofo 30.9 1.5E+02 0.0033 31.4 7.2 72 367-446 167-239 (299)
60 PRK12548 shikimate 5-dehydroge 30.7 2.6E+02 0.0056 29.0 8.8 93 369-469 152-255 (289)
61 PRK02261 methylaspartate mutas 29.8 2E+02 0.0042 26.7 7.0 58 366-425 2-60 (137)
62 cd01968 Nitrogenase_NifE_I Nit 29.8 1.1E+02 0.0025 33.1 6.3 97 367-468 158-257 (410)
63 PRK14176 bifunctional 5,10-met 29.5 1.6E+02 0.0035 31.0 7.0 72 367-446 164-236 (287)
64 PRK14187 bifunctional 5,10-met 29.4 1.6E+02 0.0035 31.1 7.0 70 368-445 161-231 (294)
65 KOG4698 Uncharacterized conser 29.3 10 0.00023 42.2 -1.8 100 379-481 192-293 (475)
66 PRK14168 bifunctional 5,10-met 28.5 1.7E+02 0.0036 31.0 7.0 71 367-445 161-236 (297)
67 PRK14193 bifunctional 5,10-met 28.0 1.8E+02 0.0039 30.6 7.0 71 367-445 158-231 (284)
68 COG2185 Sbm Methylmalonyl-CoA 28.0 1.8E+02 0.0038 27.8 6.3 64 365-433 10-77 (143)
69 PRK14167 bifunctional 5,10-met 27.8 1.6E+02 0.0036 31.1 6.7 71 367-445 157-232 (297)
70 cd01977 Nitrogenase_VFe_alpha 27.5 2.9E+02 0.0062 30.1 8.8 97 367-468 162-261 (415)
71 cd01965 Nitrogenase_MoFe_beta_ 27.4 1.1E+02 0.0024 33.4 5.6 100 366-468 154-274 (428)
72 PRK13054 lipid kinase; Reviewe 26.9 4.4E+02 0.0094 27.2 9.7 82 369-450 5-94 (300)
73 TIGR00640 acid_CoA_mut_C methy 26.9 2E+02 0.0044 26.5 6.5 68 367-436 2-70 (132)
74 COG1597 LCB5 Sphingosine kinas 26.9 4.4E+02 0.0095 27.6 9.8 90 371-468 7-104 (301)
75 COG1703 ArgK Putative periplas 26.4 75 0.0016 33.9 3.9 81 385-469 133-219 (323)
76 TIGR01501 MthylAspMutase methy 26.2 1.8E+02 0.004 27.1 6.1 47 385-433 19-66 (134)
77 PRK14184 bifunctional 5,10-met 25.9 1.9E+02 0.0041 30.5 6.7 71 368-446 158-233 (286)
78 TIGR00147 lipid kinase, YegS/R 25.8 5.6E+02 0.012 26.1 10.2 82 369-450 3-93 (293)
79 PRK10964 ADP-heptose:LPS hepto 25.4 2.8E+02 0.006 28.6 8.0 81 367-449 178-282 (322)
80 PLN02928 oxidoreductase family 25.4 8.5E+02 0.018 26.0 12.0 136 386-543 173-340 (347)
81 PRK14185 bifunctional 5,10-met 25.2 2.1E+02 0.0046 30.2 7.0 70 368-445 158-232 (293)
82 PRK13059 putative lipid kinase 24.9 5E+02 0.011 26.8 9.7 68 383-450 20-92 (295)
83 TIGR00177 molyb_syn molybdenum 24.8 1.1E+02 0.0025 28.1 4.5 53 380-432 25-80 (144)
84 PF12689 Acid_PPase: Acid Phos 24.5 2E+02 0.0044 27.8 6.2 89 371-470 35-125 (169)
85 cd03146 GAT1_Peptidase_E Type 24.4 1.6E+02 0.0034 29.0 5.7 63 365-430 29-92 (212)
86 cd02410 archeal_CPSF_KH The ar 23.5 1.4E+02 0.003 28.5 4.7 78 367-449 8-88 (145)
87 COG1920 Predicted nucleotidylt 23.2 56 0.0012 32.7 2.2 59 408-473 103-163 (210)
88 PRK10431 N-acetylmuramoyl-l-al 23.1 1.5E+02 0.0032 33.2 5.6 68 365-432 188-275 (445)
89 TIGR01284 alt_nitrog_alph nitr 23.0 1.1E+02 0.0024 34.0 4.7 97 367-468 199-298 (457)
90 PRK03094 hypothetical protein; 22.8 1.1E+02 0.0024 26.3 3.6 20 383-402 9-28 (80)
91 PRK13057 putative lipid kinase 22.5 4.3E+02 0.0093 27.0 8.6 67 383-450 14-84 (287)
92 PF02737 3HCDH_N: 3-hydroxyacy 22.3 1E+02 0.0022 29.7 3.7 76 386-468 95-173 (180)
93 PRK13055 putative lipid kinase 22.1 5.7E+02 0.012 26.9 9.6 69 382-450 20-95 (334)
94 PRK14192 bifunctional 5,10-met 22.1 2.2E+02 0.0049 29.7 6.5 68 369-446 161-231 (283)
95 smart00852 MoCF_biosynth Proba 21.8 1.5E+02 0.0031 26.9 4.5 51 382-432 18-71 (135)
96 PRK00258 aroE shikimate 5-dehy 21.4 3.3E+02 0.0071 27.9 7.5 52 414-469 181-240 (278)
97 PF03358 FMN_red: NADPH-depend 21.3 1.9E+02 0.004 26.2 5.1 54 369-423 2-75 (152)
98 PRK02842 light-independent pro 21.3 2E+02 0.0043 31.5 6.2 94 367-468 166-262 (427)
99 cd01974 Nitrogenase_MoFe_beta 20.9 1.3E+02 0.0029 33.0 4.7 100 366-468 159-278 (435)
100 COG0860 AmiC N-acetylmuramoyl- 20.8 2.2E+02 0.0047 28.9 5.9 47 386-432 76-125 (231)
101 PF10087 DUF2325: Uncharacteri 20.8 2.3E+02 0.005 24.3 5.3 67 383-470 11-79 (97)
102 PF03575 Peptidase_S51: Peptid 20.8 1.9E+02 0.0041 26.9 5.1 42 385-427 3-44 (154)
103 TIGR01862 N2-ase-Ialpha nitrog 20.1 2.1E+02 0.0046 31.6 6.1 97 367-468 191-290 (443)
104 PF14812 PBP1_TM: Transmembran 20.1 17 0.00036 31.3 -1.9 7 60-66 61-67 (81)
105 TIGR02015 BchY chlorophyllide 20.1 1.4E+02 0.0031 32.8 4.7 81 383-468 178-260 (422)
106 TIGR02195 heptsyl_trn_II lipop 20.1 4E+02 0.0087 27.5 7.9 82 366-449 173-280 (334)
No 1
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5e-83 Score=675.16 Aligned_cols=443 Identities=46% Similarity=0.737 Sum_probs=391.2
Q ss_pred cCCCCcccccchHHHHHHHHHHhHhhcccchh------hhhhccCcccccccc-cccCCCCCcCCCCCceeecCCCCCcc
Q 008963 58 KRSSSTTSRTKLLSLLLLSLLSCTFILTPHAL------SLFYSFGAEDEGLVA-ADVNAPLCSSISNGTICCDRSGIRTD 130 (547)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Cd~s~~r~d 130 (547)
|+...+...|+..+-=+++++.+|++..|..+ ..+....++.++... +....++|+..+++.++||+++.++|
T Consensus 17 ~~~~~~~~~~~~f~~~~~~vl~~~~v~kp~~l~~~~~~~~~~tg~~~~~~~~~~~~~~q~~~~~~e~~~~~C~~~g~~s~ 96 (475)
T KOG4698|consen 17 KKNLLGLLIYGVFHSSLLSVLPKCVVVKPYLLLLPRFQPDLPTGSFEDELLPLSQLLRQPPGSALEDSSFFCDRSGTRSD 96 (475)
T ss_pred hhcCccceecCcchhhhhhhcccceecCCeecccCccccCcccceeeccCCChhhcccCCCCcccCCceEEeeccccccc
Confidence 33334444455544447788888999888773 222222355554444 45557899999999999999999999
Q ss_pred eeEEeCcEEeeCCCceEEEEecCCCcccccccchhhcccceeeecCCCCCCcccccCccceeEEEeccCCCcCCCCCcee
Q 008963 131 VCIMKGDVRTNSASSSIFLYKNTNGFINYVSSMVEEKELQHEKIRPYTRKWETSVMDTIDELDLVVKKENETANHHCDVV 210 (547)
Q Consensus 131 ~C~~~GdvR~~~~~~tv~l~~~~~~~~~~~~~~~~~~~~~~~~irPY~RK~e~~~m~~v~Evtv~~~~~~~~~~p~C~v~ 210 (547)
+|+|+||+|+|+.++|+++....-- ++-.+.+|+||||+||||..+|..|+|+++...+.+ ...+|+++
T Consensus 97 ~c~~kg~~r~h~~~~~~~~~~~~~~---------~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~--~~r~c~v~ 165 (475)
T KOG4698|consen 97 FCEMKGDVRTHPDSSTVLLTLGRLL---------TFSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGS--EIRRCDVN 165 (475)
T ss_pred hhhhcCccccCcchhhhhhhccchh---------hhccccchhcccccccccccccccccccceEEcCCc--ccceeeee
Confidence 9999999999999999987765311 011357999999999999999999999999988743 46789999
Q ss_pred eecceEEEEcCCccccccchhhhhhhhHHHHHh--hhCCeeEEEEEcccchhhccHHHHHhhcCCCCCcccCCCCcceec
Q 008963 211 HDVPAVFFSTGGYTGNVYHEFNDGILPLYITSQ--HLKKKVVFVILEYHNWWIMKYGDILSRLSDYPPIDFSGDKRTHCF 288 (547)
Q Consensus 211 h~~Pavvfs~gGytgN~fH~f~D~liPLfiT~~--~f~~eVq~vv~d~~~ww~~kY~~ll~~LS~y~vIdl~~d~~v~CF 288 (547)
|++||+||++|||+||.||+|+|+++|||+|.+ .|+++||+|+++.++||+.||.+++++||+||+++++++..+|||
T Consensus 166 ~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~~~~ThcF 245 (475)
T KOG4698|consen 166 HEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDAELRTHCF 245 (475)
T ss_pred cccchheeecCCcchhhHHHHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecCCceEEEe
Confidence 999999999999999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred CeeEEccccccccccCCCCCCCC--cchHHHHHHHHHhhccccccccchHHHHHHHhccCCCCCCCCCCccccccCCCCC
Q 008963 289 PEAIVGLRIHDELTVDPSLMRGN--KNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSK 366 (547)
Q Consensus 289 ~~aiVGL~~h~~L~idp~~~p~~--~si~dFr~FLr~ay~~r~~~L~~~~~r~~~~~l~i~ps~~~~~~~~~~~~~~~~~ 366 (547)
.+++|||..|.++++||...+++ ++|.+|++||+.+|++|+... +++ .....+
T Consensus 246 ~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~------------~~t-------------~~~~~k 300 (475)
T KOG4698|consen 246 KEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEA------------NVT-------------APEPWK 300 (475)
T ss_pred eeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhccccccc------------ccC-------------CcChhh
Confidence 99999999999999999998866 899999999999998775311 100 123456
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEe
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVI 446 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~vIEI~ 446 (547)
+||+++++|.++|.|+|++||.+++++.||+|.+++++. .++.+|+++.+++|||||||||||||++|+||++++|||.
T Consensus 301 kpri~~lsR~~~r~Ilne~el~~~~~~~gf~v~~~~~~~-t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~ 379 (475)
T KOG4698|consen 301 KPRITILSRAGSRAILNEDELPRMLEDIGFEVSVLRPDR-TEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIY 379 (475)
T ss_pred CCceEEEecccchhhhcchhhhHHHHhCCCceEEecccc-cchhhhhheeeccceeeeccCccceeEEecCCcceEEEEE
Confidence 899999999999999999999999999999999999854 9999999999999999999999999999999999999999
Q ss_pred cCC-CCccccchHHHHHhhcCCeEEEEEecCCCCcccccCCCCCCccCCCCcccccCcceee-eeecCCccEEEehHHHH
Q 008963 447 PLG-TDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSVNEKGWQYTK-TIYLDGQNVRLNLRRFQ 524 (547)
Q Consensus 447 P~g-~~~~~~~~Y~~lA~~~Gl~Y~~y~i~~eEssL~~~y~~dhpv~~dP~~i~~kgW~~~~-~~YL~~QnV~lDi~rF~ 524 (547)
|+| .+|.+..+|..+|+.|+++|.+|+|.++|++|+++|++||+++.||.+..++||+..+ .+||..|+|++|+.||+
T Consensus 380 pcg~~~w~a~~a~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~ 459 (475)
T KOG4698|consen 380 PCGDPGWAAKLARLRPAKYMTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFR 459 (475)
T ss_pred ECCCccchhhhhhccccceeccccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcc
Confidence 999 8999999999999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 008963 525 KRLVRAYDYSINR 537 (547)
Q Consensus 525 ~~L~~A~~~l~~~ 537 (547)
+.+.+|++..+.+
T Consensus 460 ~~~~~a~~~~~~~ 472 (475)
T KOG4698|consen 460 KTLVKAYLKEITQ 472 (475)
T ss_pred cchhHHHHHHHHh
Confidence 9999999887765
No 2
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=99.95 E-value=4.2e-27 Score=225.36 Aligned_cols=198 Identities=25% Similarity=0.389 Sum_probs=140.4
Q ss_pred ccccchhhhhhhhHHHHHhhh--CCeeEEEEEcccchhhccHH-HHHhhcCC-CCCcccCCCCcceecCeeEEccccccc
Q 008963 225 GNVYHEFNDGILPLYITSQHL--KKKVVFVILEYHNWWIMKYG-DILSRLSD-YPPIDFSGDKRTHCFPEAIVGLRIHDE 300 (547)
Q Consensus 225 gN~fH~f~D~liPLfiT~~~f--~~eVq~vv~d~~~ww~~kY~-~ll~~LS~-y~vIdl~~d~~v~CF~~aiVGL~~h~~ 300 (547)
.|++|.+.| ++|.+.+++++ +.+..+++.+.. ...+|. ++|+.|.- ...|.+ ..++..||++++++......
T Consensus 1 ~~~gH~l~d-~l~~l~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~l~~lg~~~~~i~~-~~~~~~~~~~l~~~~~~~~~ 76 (206)
T PF04577_consen 1 NNFGHFLID-FLPRLWYLPQYIPDSDIIILVPDDF--DNPPFIREILELLGIPENRIKI-DSDEPVCFERLIVPSPPYSP 76 (206)
T ss_pred CCCcEEHHH-HHHHHHHHHHHCCCCCeEEEEcCCc--cccHHHHHHHHHcCCCccEEEE-cCCCeEEECEEEEeCCCccc
Confidence 478899999 56766888876 344445544311 122444 67776653 222322 23578999999997654311
Q ss_pred cccCCCCCCCCcchHHHHHHHHHhhccccccccchHHHHHHHhccCCCCCCCCCCccccccCCCCCCCEEEEEec--CCC
Q 008963 301 LTVDPSLMRGNKNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSKKPKLVILSR--NGS 378 (547)
Q Consensus 301 L~idp~~~p~~~si~dFr~FLr~ay~~r~~~L~~~~~r~~~~~l~i~ps~~~~~~~~~~~~~~~~~rprlliIsR--~~s 378 (547)
.... ......|++++++.+. .....+||++|++| ++.
T Consensus 77 ~~~~------~~~~~~~~~~~~~~~~-----------------------------------~~~~~~p~i~~i~R~~~~~ 115 (206)
T PF04577_consen 77 SDFN------PSFFPALRDRIRRKLN-----------------------------------LPPPKRPRILYISRRKSGS 115 (206)
T ss_pred cCcC------chHHHHHHHHHHHHhC-----------------------------------CcccCCCeEEEEecCCCCC
Confidence 1011 1112245555544331 01115679999999 567
Q ss_pred ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEecCCCCccccchH
Q 008963 379 RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYY 458 (547)
Q Consensus 379 R~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~vIEI~P~g~~~~~~~~Y 458 (547)
|+|.||+||++.+++.||+++. + +.+++.||++++++|||+||+|||||+|++||+||+.||||+|... ...+|
T Consensus 116 R~i~Ne~el~~~l~~~~~~~v~--~-~~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~~---~~~~~ 189 (206)
T PF04577_consen 116 RRILNEDELLEILKKYGFEVVD--P-EDLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPNY---YNRHY 189 (206)
T ss_pred CcCcCHHHHHHHHhhCCeEEEe--C-CCCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCCC---CCHHH
Confidence 9999999999999999987654 4 4799999999999999999999999999999999999999987752 34559
Q ss_pred HHHHhhcCCeEEEEE
Q 008963 459 GEPARKLGLKYIGYT 473 (547)
Q Consensus 459 ~~lA~~~Gl~Y~~y~ 473 (547)
..+|+.+|++|..+.
T Consensus 190 ~~~a~~~~~~y~~v~ 204 (206)
T PF04577_consen 190 RNLAQALGIHYYAVY 204 (206)
T ss_pred HHHHHHcCCeEEEEe
Confidence 999999999996553
No 3
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=99.70 E-value=5.1e-16 Score=158.94 Aligned_cols=202 Identities=19% Similarity=0.259 Sum_probs=130.6
Q ss_pred eEEEEcCCccccccchhhhhhhhHHHHHhhhC--CeeEEEEEcccchhhccHHHHHhhc-CCCCCcccCCCCcceecCee
Q 008963 215 AVFFSTGGYTGNVYHEFNDGILPLYITSQHLK--KKVVFVILEYHNWWIMKYGDILSRL-SDYPPIDFSGDKRTHCFPEA 291 (547)
Q Consensus 215 avvfs~gGytgN~fH~f~D~liPLfiT~~~f~--~eVq~vv~d~~~ww~~kY~~ll~~L-S~y~vIdl~~d~~v~CF~~a 291 (547)
..||.-+|+..|+-|.+.| .+|-.+.++..+ .+--++.....+| -.+++..+ ++-++|.- ...+|-..+
T Consensus 122 ~~v~~~~~~~~~Yghflle-~Lp~l~~i~~l~i~~~~pLl~P~~~~w----qadll~m~~~~~~ii~~---~p~V~~~~a 193 (368)
T COG4421 122 GAVFKEWGFSFEYGHFLLE-NLPYLWQIKSLGILSDPPLLYPRLTEW----QADLLFMAGPDCPIIAT---APAVPLGPA 193 (368)
T ss_pred cceecccccccccchhHHh-hhHHHHHHhhhcccccCcccCCcchHH----HHhHHhhcCCCCceeec---ccceeeccc
Confidence 3466667789999999999 677555556543 1122332222222 23666654 46666654 345554444
Q ss_pred EEccccccccccCCCCCCCCcchHHHHHHHHHhhccccccccchHHHHHHHhccCCCCCCCCCCccccccCCCCCCCEEE
Q 008963 292 IVGLRIHDELTVDPSLMRGNKNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSKKPKLV 371 (547)
Q Consensus 292 iVGL~~h~~L~idp~~~p~~~si~dFr~FLr~ay~~r~~~L~~~~~r~~~~~l~i~ps~~~~~~~~~~~~~~~~~rprll 371 (547)
++.... +| ..+++++...- +|... ..++...++.+
T Consensus 194 vl~~~~------s~---------~~~ha~l~~~~-----------eR~~~-------------------~~~~~~~adki 228 (368)
T COG4421 194 VLPVSG------SP---------RYTHALLAWKD-----------ERVIA-------------------IKGKGKVADKI 228 (368)
T ss_pred ccCCCC------Cc---------hhhhHHHHHHh-----------hhhhc-------------------ccCCCCCcceE
Confidence 332211 11 12334443211 11111 02345567789
Q ss_pred EEecCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEecCC
Q 008963 372 ILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLG 449 (547)
Q Consensus 372 iIsR~~s--R~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~vIEI~P~g 449 (547)
|+||+.. |+++||+||...+++.||.++.. |+++..||++||+.|.||||.||+||.|++|+++|+.||||.|-.
T Consensus 229 YVSR~~qS~R~lvnE~evE~~~q~~G~~IVrP---Etl~~~eQ~~LFr~AkvIvG~~GS~laNavF~~~~~kvvEI~~~~ 305 (368)
T COG4421 229 YVSRKAQSMRVLVNEEEVERLLQRSGLTIVRP---ETLGPREQARLFRKAKVIVGPHGSGLANAVFAAPGCKVVEIQPGT 305 (368)
T ss_pred EEechhhHHHHhhCHHHHHHHHHhcCcEEEec---hhcCHHHHHHHhhcceEEeccccchhhhheecCCCceEEEeccCC
Confidence 9999653 99999999999999999998865 479999999999999999999999999999999999999999943
Q ss_pred CCccccchH-HHHHhhcCCeEEEEEec
Q 008963 450 TDWAAETYY-GEPARKLGLKYIGYTIL 475 (547)
Q Consensus 450 ~~~~~~~~Y-~~lA~~~Gl~Y~~y~i~ 475 (547)
+. .+..+ ++++..-|.-|. +.+.
T Consensus 306 ~~--~~s~~vr~~~~~~g~~~~-~~ve 329 (368)
T COG4421 306 TN--FRSFWVRMANYMSGDYYP-GYVE 329 (368)
T ss_pred Cc--chHHHHHHhhhcccceee-cccc
Confidence 21 33444 444445555554 4443
No 4
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=78.67 E-value=9.7 Score=35.65 Aligned_cols=70 Identities=21% Similarity=0.275 Sum_probs=51.7
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVFIQ 444 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~vIE 444 (547)
.-+++++.|+. ..-..+..+|.+.|..|.+.+- .+-++.+ .+++|||+|..-|.. +-..=|++||++||-
T Consensus 28 gk~v~VvGrs~----~vG~pla~lL~~~gatV~~~~~-~t~~l~~---~v~~ADIVvsAtg~~~~i~~~~ikpGa~Vid 98 (140)
T cd05212 28 GKKVLVVGRSG----IVGAPLQCLLQRDGATVYSCDW-KTIQLQS---KVHDADVVVVGSPKPEKVPTEWIKPGATVIN 98 (140)
T ss_pred CCEEEEECCCc----hHHHHHHHHHHHCCCEEEEeCC-CCcCHHH---HHhhCCEEEEecCCCCccCHHHcCCCCEEEE
Confidence 45788897665 3445678888889999998863 2335544 589999999988865 345558999999984
No 5
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=77.15 E-value=10 Score=36.43 Aligned_cols=70 Identities=24% Similarity=0.440 Sum_probs=46.3
Q ss_pred CEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 368 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 368 prlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
-++++|.|+.. + -.-+..+|.+.|..|.+... .+.++.+ .+++|||+|..-| ++|-..=|.+||++||-+
T Consensus 37 k~v~VvGrs~~---V-G~Pla~lL~~~~atVt~~h~-~T~~l~~---~~~~ADIVVsa~G~~~~i~~~~ik~gavVIDv 107 (160)
T PF02882_consen 37 KKVVVVGRSNI---V-GKPLAMLLLNKGATVTICHS-KTKNLQE---ITRRADIVVSAVGKPNLIKADWIKPGAVVIDV 107 (160)
T ss_dssp -EEEEE-TTTT---T-HHHHHHHHHHTT-EEEEE-T-TSSSHHH---HHTTSSEEEE-SSSTT-B-GGGS-TTEEEEE-
T ss_pred CEEEEECCcCC---C-ChHHHHHHHhCCCeEEeccC-CCCcccc---eeeeccEEeeeeccccccccccccCCcEEEec
Confidence 46889988763 1 12477888888999998763 3445554 4689999998887 678888899999999976
No 6
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.24 E-value=9.4 Score=39.88 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=53.8
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-+++++.|+.. --.-+..++...|..|.+... .+. ...+.+++||++|+.=| +++...=|.+||++||-+
T Consensus 152 Gk~V~ViGrs~~----vGrpla~lL~~~~atVtv~hs-~t~---~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDV 223 (279)
T PRK14178 152 GKRAVVVGRSID----VGRPMAALLLNADATVTICHS-KTE---NLKAELRQADILVSAAGKAGFITPDMVKPGATVIDV 223 (279)
T ss_pred CCEEEEECCCcc----ccHHHHHHHHhCCCeeEEEec-Chh---HHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEe
Confidence 457889988764 122467777888999988753 222 33456789999999999 888777788999999997
Q ss_pred e
Q 008963 446 I 446 (547)
Q Consensus 446 ~ 446 (547)
-
T Consensus 224 g 224 (279)
T PRK14178 224 G 224 (279)
T ss_pred e
Confidence 4
No 7
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=70.89 E-value=17 Score=38.62 Aligned_cols=98 Identities=15% Similarity=0.325 Sum_probs=70.5
Q ss_pred CCCCEEEEEecCCC-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEee---chhhhhhhhccCCCc
Q 008963 365 SKKPKLVILSRNGS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGV---HGAAMTHFLFMKPGS 440 (547)
Q Consensus 365 ~~rprlliIsR~~s-R~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGv---HGAGLTN~lFmppga 440 (547)
..++.+-+|.-... . -|..|+.+.|++.|.+|+.+-+ ...+++| ++-+.+|.+-|.+ +|..++..|=-+-|.
T Consensus 150 ~~~~~vNlig~~~~~~--~d~~el~~ll~~~G~~v~~~~~-~~~s~~~-i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~ 225 (399)
T cd00316 150 TEPGSVNLIGGYNLGG--GDLRELKRLLEEMGIRVNALFD-GGTTVEE-LRELGNAKLNLVLCRESGLYLARYLEEKYGI 225 (399)
T ss_pred CCCCcEEEECCCCCch--hhHHHHHHHHHHcCCcEEEEcC-CCCCHHH-HHhhccCcEEEEecHhHHHHHHHHHHHHhCC
Confidence 34566767754321 2 5889999999999999988743 3466655 5667788877777 566677766555677
Q ss_pred EEEEEecCCCCccccchHHHHHhhcCC
Q 008963 441 VFIQVIPLGTDWAAETYYGEPARKLGL 467 (547)
Q Consensus 441 ~vIEI~P~g~~~~~~~~Y~~lA~~~Gl 467 (547)
-.+...|+|.+- ...|++.+|+.+|+
T Consensus 226 p~~~~~p~G~~~-t~~~l~~i~~~~g~ 251 (399)
T cd00316 226 PYILINPIGLEA-TDAFLRKLAELFGI 251 (399)
T ss_pred CeEEeCCcCHHH-HHHHHHHHHHHhCC
Confidence 677777999642 46789999999996
No 8
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=67.60 E-value=10 Score=41.48 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=69.4
Q ss_pred CCCEEEEEecCC---CccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeec---hhhhhhhhccCCC
Q 008963 366 KKPKLVILSRNG---SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH---GAAMTHFLFMKPG 439 (547)
Q Consensus 366 ~rprlliIsR~~---sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvH---GAGLTN~lFmppg 439 (547)
.+++|-||.... .-.--|.+|+.+.|++.|.++..+-+ ...++ ++++-+.+|.+-|.++ |..++..|.-+=|
T Consensus 154 ~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~-~~~~~-~ei~~~~~A~~niv~~~~~g~~~a~~L~~~~g 231 (427)
T cd01971 154 EPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFG-PESNG-EELRSIPKAQFNLVLSPWVGLEFAQHLEEKYG 231 (427)
T ss_pred CCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEEC-CCCCH-HHHHhcccCcEEEEEcHhhHHHHHHHHHHHhC
Confidence 356676775421 11225789999999999999987643 34565 6778888888655554 4456666666667
Q ss_pred cEEEEE--ecCCCCccccchHHHHHhhcCCe
Q 008963 440 SVFIQV--IPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 440 a~vIEI--~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
.-.+.. +|+|++ ....|+..+++.+|+.
T Consensus 232 iP~i~~~~~P~G~~-~t~~~l~~i~~~~g~~ 261 (427)
T cd01971 232 QPYIHSPTLPIGAK-ATAEFLRQVAKFAGIE 261 (427)
T ss_pred CceEecCCCccCHH-HHHHHHHHHHHHhCCC
Confidence 767776 789964 2457889999999965
No 9
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.63 E-value=25 Score=37.04 Aligned_cols=71 Identities=21% Similarity=0.364 Sum_probs=51.7
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|.+. -=.-++..|.+.|+.|.+... .+.++. +++++|||+|.+=| +.+....|++||++||-+
T Consensus 158 Gk~V~viGrs~~----mG~PmA~~L~~~g~tVtv~~~-rT~~l~---e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDv 229 (296)
T PRK14188 158 GLNAVVIGRSNL----VGKPMAQLLLAANATVTIAHS-RTRDLP---AVCRRADILVAAVGRPEMVKGDWIKPGATVIDV 229 (296)
T ss_pred CCEEEEEcCCcc----hHHHHHHHHHhCCCEEEEECC-CCCCHH---HHHhcCCEEEEecCChhhcchheecCCCEEEEc
Confidence 346889988764 122467777788999999842 233453 45689999887765 567788899999999986
No 10
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=58.68 E-value=27 Score=32.72 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCEEEEEecC-CCCCHHHHHHHHhc--CCeEEeechhhhhh
Q 008963 386 SLVKMAEDIGFQVQVVRPD-RTSELAKIYRALNS--SDVMVGVHGAAMTH 432 (547)
Q Consensus 386 Evv~~lk~~GfeV~v~e~~-~~~s~~eQi~l~~~--aDVlVGvHGAGLTN 432 (547)
.|.+.|++.|++|+....+ ...++.+.+...+. +|++|..|-.+-.+
T Consensus 33 ~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~~~ 82 (172)
T cd02696 33 KLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAAPN 82 (172)
T ss_pred HHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 3556667779999887653 23689999999985 99999999887776
No 11
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.52 E-value=38 Score=35.85 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=52.1
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|.+. + -.-+...|.+.|+.|.+..- .+.+++ ++.++|||+|.+=| +++....|++||++||.+
T Consensus 159 Gk~V~vIG~s~i---v-G~PmA~~L~~~gatVtv~~~-~t~~l~---e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDv 230 (301)
T PRK14194 159 GKHAVVIGRSNI---V-GKPMAALLLQAHCSVTVVHS-RSTDAK---ALCRQADIVVAAVGRPRLIDADWLKPGAVVIDV 230 (301)
T ss_pred CCEEEEECCCCc---c-HHHHHHHHHHCCCEEEEECC-CCCCHH---HHHhcCCEEEEecCChhcccHhhccCCcEEEEe
Confidence 457889998753 0 11367777888999999853 233444 45789999887766 567778899999999987
Q ss_pred e
Q 008963 446 I 446 (547)
Q Consensus 446 ~ 446 (547)
-
T Consensus 231 g 231 (301)
T PRK14194 231 G 231 (301)
T ss_pred c
Confidence 3
No 12
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.49 E-value=37 Score=35.59 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=51.5
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|++. +- .-+...|.+.|..|.+... .+-++ .+.+++|||+|.+=| +++....|++||++||.+
T Consensus 158 Gk~v~vIG~S~i---vG-~Pla~lL~~~gatVtv~~s-~t~~l---~~~~~~ADIVI~avg~~~~v~~~~ik~GavVIDv 229 (284)
T PRK14179 158 GKHAVVIGRSNI---VG-KPMAQLLLDKNATVTLTHS-RTRNL---AEVARKADILVVAIGRGHFVTKEFVKEGAVVIDV 229 (284)
T ss_pred CCEEEEECCCCc---Cc-HHHHHHHHHCCCEEEEECC-CCCCH---HHHHhhCCEEEEecCccccCCHHHccCCcEEEEe
Confidence 346889998763 11 1266777788999998742 23333 346889999888776 567778899999999997
No 13
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=56.76 E-value=23 Score=34.02 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=51.6
Q ss_pred CCCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEEEE
Q 008963 366 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVFIQ 444 (547)
Q Consensus 366 ~rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~vIE 444 (547)
..-++++|..... =..-+++.|.+.|.+|.+..- +..+..+.+++|||+|+.-|+. +-..=.++++.++|-
T Consensus 43 ~gk~vlViG~G~~----~G~~~a~~L~~~g~~V~v~~r----~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viID 114 (168)
T cd01080 43 AGKKVVVVGRSNI----VGKPLAALLLNRNATVTVCHS----KTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVID 114 (168)
T ss_pred CCCEEEEECCcHH----HHHHHHHHHhhCCCEEEEEEC----CchhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEE
Confidence 4567888877542 011267788888998877752 3466778999999999999994 222223577888888
Q ss_pred Ee-cC
Q 008963 445 VI-PL 448 (547)
Q Consensus 445 I~-P~ 448 (547)
+- |.
T Consensus 115 la~pr 119 (168)
T cd01080 115 VGINR 119 (168)
T ss_pred ccCCC
Confidence 84 54
No 14
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=56.17 E-value=58 Score=34.98 Aligned_cols=97 Identities=10% Similarity=0.096 Sum_probs=67.0
Q ss_pred CCCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeec---hhhhhhhhccCCCcEE
Q 008963 366 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH---GAAMTHFLFMKPGSVF 442 (547)
Q Consensus 366 ~rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvH---GAGLTN~lFmppga~v 442 (547)
.+..|-||.-.. ..-|..|+.+.|++.|.++..+-+ ...+++| ++-+.+|.+-|.++ |-.++..|-=+=|.-.
T Consensus 159 ~~~~VNiig~~~--~~~d~~el~~lL~~~Gi~~~~~~~-~~~~~~~-i~~~~~A~~niv~~~~~~~~~a~~L~~r~GiP~ 234 (406)
T cd01967 159 TPYDVNIIGEYN--IGGDAWVIKPLLEELGIRVNATFT-GDGTVDE-LRRAHRAKLNLVHCSRSMNYLAREMEERYGIPY 234 (406)
T ss_pred CCCeEEEEeccc--cchhHHHHHHHHHHcCCEEEEEeC-CCCCHHH-HhhCccCCEEEEEChHHHHHHHHHHHHhhCCCE
Confidence 355676776322 234889999999999999987654 3567765 55688888766654 4445554544456656
Q ss_pred EEEecCCCCccccchHHHHHhhcCC
Q 008963 443 IQVIPLGTDWAAETYYGEPARKLGL 467 (547)
Q Consensus 443 IEI~P~g~~~~~~~~Y~~lA~~~Gl 467 (547)
+...|+|++ ....+++.+++.+|.
T Consensus 235 ~~~~p~G~~-~t~~~l~~l~~~lg~ 258 (406)
T cd01967 235 MEVNFYGFE-DTSESLRKIAKFFGD 258 (406)
T ss_pred EEecCCcHH-HHHHHHHHHHHHhCC
Confidence 677888864 246789999999997
No 15
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=55.83 E-value=27 Score=38.10 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=68.6
Q ss_pred CCCEEEEEecCCC--cc-ccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhcc--CCC
Q 008963 366 KKPKLVILSRNGS--RA-ITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFM--KPG 439 (547)
Q Consensus 366 ~rprlliIsR~~s--R~-IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFm--ppg 439 (547)
.++.|-||.-... +. --|..|+.+.|++.|++|+.+-+ ...+++| ++-+.+|.+-|.++. +|+.-+-+| +=|
T Consensus 160 ~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~-~~~~~~e-i~~~~~A~lniv~~~~~g~~~a~~Lee~~G 237 (426)
T cd01972 160 QEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIA-GGCSVEE-LERASEAAANVTLCLDLGYYLGAALEQRFG 237 (426)
T ss_pred CCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeC-CCCCHHH-HHhcccCCEEEEEChhHHHHHHHHHHHHhC
Confidence 3456667754432 11 36789999999999999987754 3567765 567888888888774 444444444 456
Q ss_pred cEEEEE-ecCCCCccccchHHHHHhhcCCe
Q 008963 440 SVFIQV-IPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 440 a~vIEI-~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
.-.+++ +|+|.+ ....|+..+|+.+|+.
T Consensus 238 iP~~~~~~P~G~~-~T~~~l~~ia~~~g~~ 266 (426)
T cd01972 238 VPEIKAPQPYGIE-ATDKWLREIAKVLGME 266 (426)
T ss_pred CCeEecCCccCHH-HHHHHHHHHHHHhCCc
Confidence 667776 689853 2456889999988863
No 16
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=55.38 E-value=19 Score=33.67 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=35.0
Q ss_pred HHHHHHHcCCEEEEEecC-CCCCHHHHHHHH--hcCCeEEeechhhhhh
Q 008963 387 LVKMAEDIGFQVQVVRPD-RTSELAKIYRAL--NSSDVMVGVHGAAMTH 432 (547)
Q Consensus 387 vv~~lk~~GfeV~v~e~~-~~~s~~eQi~l~--~~aDVlVGvHGAGLTN 432 (547)
|.+.|++.|++|...... ...++.+.++.. ..+|++|..|--+..+
T Consensus 33 l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~~~ 81 (175)
T PF01520_consen 33 LKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNASNG 81 (175)
T ss_dssp HHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-SSS
T ss_pred HHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCccC
Confidence 556667789999887643 346899999999 7899999999766533
No 17
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=53.43 E-value=36 Score=32.91 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCEEEEEecCC-C--------------CCHHHHHHHHh--cCCeEEeechhhhhh
Q 008963 386 SLVKMAEDIGFQVQVVRPDR-T--------------SELAKIYRALN--SSDVMVGVHGAAMTH 432 (547)
Q Consensus 386 Evv~~lk~~GfeV~v~e~~~-~--------------~s~~eQi~l~~--~aDVlVGvHGAGLTN 432 (547)
.|.+.|++.|++|+...... + .++.+.+++.+ .+|++|++|--+..+
T Consensus 34 ~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na~~~ 97 (189)
T TIGR02883 34 KLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNAFPS 97 (189)
T ss_pred HHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence 35677777899998776532 2 26888888887 589999999877643
No 18
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.88 E-value=39 Score=35.51 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=51.8
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~vIEI 445 (547)
.-++++|.|.+. + -.-+..+|.+.|..|.+..- .+ .+..+.+++|||+|+.=|.. +...=+.++|++||-+
T Consensus 158 Gk~vvVIGrs~~---V-G~pla~lL~~~gatVtv~~s-~t---~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDv 229 (286)
T PRK14175 158 GKNAVVIGRSHI---V-GQPVSKLLLQKNASVTILHS-RS---KDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDV 229 (286)
T ss_pred CCEEEEECCCch---h-HHHHHHHHHHCCCeEEEEeC-Cc---hhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEc
Confidence 347889988762 1 11367778888999998863 22 23346789999999988877 5555678999999997
Q ss_pred e
Q 008963 446 I 446 (547)
Q Consensus 446 ~ 446 (547)
=
T Consensus 230 G 230 (286)
T PRK14175 230 G 230 (286)
T ss_pred C
Confidence 4
No 19
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=50.66 E-value=42 Score=36.65 Aligned_cols=94 Identities=20% Similarity=0.286 Sum_probs=65.3
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcC--CeEEeechhhhhhhhccCCCcEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSS--DVMVGVHGAAMTHFLFMKPGSVFIQ 444 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~a--DVlVGvHGAGLTN~lFmppga~vIE 444 (547)
++++.+|..- + -.+.+|+.+.|++.|.+++++-+ ..+++|. +-+.+| .+.++..+...+-.|= ..|.-.+.
T Consensus 159 ~~~vniiG~~-~--~~d~~ei~~lL~~~Gl~~~~~l~--~~~~~el-~~~~~A~~~i~~~~~~~~~a~~Le-~~GvP~~~ 231 (416)
T cd01980 159 EPSLALLGEM-F--PADPVAIGSVLERMGLAAVPVVP--TREWREL-YAAGDAAAVAALHPFYTATIRELE-EAGRPIVS 231 (416)
T ss_pred CCeEEEEccC-C--CCCHHHHHHHHHHcCCceeeEeC--CCCHHHH-hhcccCcEEEEeChhHHHHHHHHH-HcCCceec
Confidence 4578888522 1 33667999999999999986434 3577665 445444 4555666666666564 34776777
Q ss_pred EecCCCCccccchHHHHHhhcCCe
Q 008963 445 VIPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 445 I~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
..|.|++ ....|++.+|...|..
T Consensus 232 ~~piG~~-~td~~l~~la~~~g~~ 254 (416)
T cd01980 232 GAPVGAD-GTAAWLEAVGEALGLD 254 (416)
T ss_pred CCCcCch-HHHHHHHHHHHHhCcC
Confidence 7899976 4578999999999964
No 20
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=49.98 E-value=32 Score=36.05 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=40.8
Q ss_pred HHHHHHHcCCEEEEEecC-CCCCHHHHHHHHh--cCCeEEeechhhhhhhhccCCCcEEEEEecC
Q 008963 387 LVKMAEDIGFQVQVVRPD-RTSELAKIYRALN--SSDVMVGVHGAAMTHFLFMKPGSVFIQVIPL 448 (547)
Q Consensus 387 vv~~lk~~GfeV~v~e~~-~~~s~~eQi~l~~--~aDVlVGvHGAGLTN~lFmppga~vIEI~P~ 448 (547)
|.+.|++.|++|+..... ...++.+-+++.+ .||++|++|--+.++ +.+.=+|++-+
T Consensus 91 l~~~L~~~G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~~~-----~~a~G~evy~~ 150 (287)
T PRK10319 91 VRSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTN-----PKAAGASVFAL 150 (287)
T ss_pred HHHHHHHCCCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCCCC-----CCCcEEEEEEe
Confidence 445556679999987643 4578999999987 899999999655432 34555666643
No 21
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=49.57 E-value=73 Score=33.13 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCeEEeechhhhhh---hhccCCCcEEEEEecCCCCccccchHHHHHhhcCCeEE
Q 008963 409 LAKIYRALNSSDVMVGVHGAAMTH---FLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYI 470 (547)
Q Consensus 409 ~~eQi~l~~~aDVlVGvHGAGLTN---~lFmppga~vIEI~P~g~~~~~~~~Y~~lA~~~Gl~Y~ 470 (547)
+.+.-+++.++|++|-.=..++.+ +-.|++++.+|-+.-.. ..+.| ..|+..|++.+
T Consensus 200 ~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~P----g~tdf-~~Ak~~G~~a~ 259 (287)
T TIGR02853 200 LNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKP----GGTDF-EYAKKRGIKAL 259 (287)
T ss_pred HHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCC----CCCCH-HHHHHCCCEEE
Confidence 344456778999999866666533 22478999999996321 23456 78999999985
No 22
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=49.42 E-value=27 Score=35.65 Aligned_cols=49 Identities=24% Similarity=0.384 Sum_probs=41.6
Q ss_pred CEEEEEecCC------CccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcC
Q 008963 368 PKLVILSRNG------SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSS 419 (547)
Q Consensus 368 prlliIsR~~------sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~a 419 (547)
--+.||+|++ +..|.|.+.+.+..+++||+|+.++ ..++++.++.+.++
T Consensus 172 NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evd---G~d~~~i~~a~~~~ 226 (243)
T COG3959 172 NLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVD---GHDIEEIVEALEKA 226 (243)
T ss_pred cEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEc---CcCHHHHHHHHHhh
Confidence 3467999987 4999999999999999999999886 46788888877665
No 23
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=48.50 E-value=30 Score=36.95 Aligned_cols=98 Identities=16% Similarity=0.262 Sum_probs=71.0
Q ss_pred CCCCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhh-hhhccCC--CcE
Q 008963 365 SKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMT-HFLFMKP--GSV 441 (547)
Q Consensus 365 ~~rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLT-N~lFmpp--ga~ 441 (547)
.+++.+-||....-- .-|..|+.+.|++.|.+|..+-+ ...+++| ++-+.+|++-|.++..+.. =.=+|.. |.-
T Consensus 142 ~~~~~VNiiG~~~~~-~~d~~el~~lL~~~Gi~v~~~~~-~~~t~~e-~~~~~~A~lniv~~~~~~~~~a~~L~e~~giP 218 (398)
T PF00148_consen 142 KKPRSVNIIGGSPLG-PGDLEELKRLLEELGIEVNAVFP-GGTTLEE-IRKAPEAALNIVLCPEGGPYAAEWLEERFGIP 218 (398)
T ss_dssp TSSSEEEEEEESTBT-HHHHHHHHHHHHHTTEEEEEEEE-TTBCHHH-HHHGGGSSEEEESSCCHHHHHHHHHHHHHT-E
T ss_pred CCCCceEEecCcCCC-cccHHHHHHHHHHCCCceEEEeC-CCCCHHH-HHhCCcCcEEEEeccchhhHHHHHHHHHhCCC
Confidence 344577777654311 27889999999999999887654 3466654 6788999999999888665 4555554 777
Q ss_pred EEE-EecCCCCccccchHHHHHhhcC
Q 008963 442 FIQ-VIPLGTDWAAETYYGEPARKLG 466 (547)
Q Consensus 442 vIE-I~P~g~~~~~~~~Y~~lA~~~G 466 (547)
.+. ..|+|.+. ...||+.+|+.+|
T Consensus 219 ~~~~~~p~G~~~-t~~~l~~i~~~lg 243 (398)
T PF00148_consen 219 YLYFPSPYGIEG-TDAWLRAIAEALG 243 (398)
T ss_dssp EEEEC-SBSHHH-HHHHHHHHHHHHT
T ss_pred eeeccccccHHH-HHHHHHHHHHHhC
Confidence 777 67998643 4679999999999
No 24
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=48.21 E-value=1.2e+02 Score=28.00 Aligned_cols=94 Identities=16% Similarity=0.258 Sum_probs=55.3
Q ss_pred CccccCHHHHHHHHHHcCCEEEEEecC-CCCCHHHH-------------HHHHhcCCeEEeechhhhhhhhccCCCcEEE
Q 008963 378 SRAITNENSLVKMAEDIGFQVQVVRPD-RTSELAKI-------------YRALNSSDVMVGVHGAAMTHFLFMKPGSVFI 443 (547)
Q Consensus 378 sR~IlNe~Evv~~lk~~GfeV~v~e~~-~~~s~~eQ-------------i~l~~~aDVlVGvHGAGLTN~lFmppga~vI 443 (547)
.||+-=..+.++.|.+.|++|.+-.-. +...|.++ -+++..||||+++..-...-.-.|++|.++|
T Consensus 10 E~RVal~P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~~e~~~l~~g~~li 89 (136)
T PF05222_consen 10 ERRVALTPEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSEEELALLKPGQTLI 89 (136)
T ss_dssp ---BSS-HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---GGGGGGS-TTCEEE
T ss_pred CcEecccHHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCHHHHhhcCCCcEEE
Confidence 356656667777788889998873321 12222111 1578899999999999999999999999999
Q ss_pred EEecCCCCccccchHHHHHhhcCCeEEEEEec
Q 008963 444 QVIPLGTDWAAETYYGEPARKLGLKYIGYTIL 475 (547)
Q Consensus 444 EI~P~g~~~~~~~~Y~~lA~~~Gl~Y~~y~i~ 475 (547)
=++-+. ........++ ..|+..+.|...
T Consensus 90 ~~~~~~---~~~~~~~~l~-~~~it~~a~E~i 117 (136)
T PF05222_consen 90 GFLHPA---QNKELLEALA-KKGITAFALELI 117 (136)
T ss_dssp EE--GG---GHHHHHHHHH-HCTEEEEEGGGS
T ss_pred Eeeccc---cCHHHHHHHH-HCCCEEEEhhhC
Confidence 887553 1222333333 477777666543
No 25
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.90 E-value=58 Score=34.20 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=50.8
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|+.. + -.=+..+|.+.|..|.+... .+.++. +.+++|||+|+.=| +++-..=|.+||++||-+
T Consensus 158 Gk~vvViGrS~i---V-G~Pla~lL~~~~atVt~chs-~t~~l~---~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDv 229 (284)
T PRK14190 158 GKHVVVVGRSNI---V-GKPVGQLLLNENATVTYCHS-KTKNLA---ELTKQADILIVAVGKPKLITADMVKEGAVVIDV 229 (284)
T ss_pred CCEEEEECCCCc---c-HHHHHHHHHHCCCEEEEEeC-CchhHH---HHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEe
Confidence 457899998864 1 11366777778999988753 233333 46899999988766 466677778999999987
No 26
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=45.90 E-value=74 Score=33.17 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=48.9
Q ss_pred HHHHHHHcCCEEEEEecCCC------------CCHHHHHHHHhcCCeEEeechhhh-hhhh--ccCCCcEEEEEecCCCC
Q 008963 387 LVKMAEDIGFQVQVVRPDRT------------SELAKIYRALNSSDVMVGVHGAAM-THFL--FMKPGSVFIQVIPLGTD 451 (547)
Q Consensus 387 vv~~lk~~GfeV~v~e~~~~------------~s~~eQi~l~~~aDVlVGvHGAGL-TN~l--Fmppga~vIEI~P~g~~ 451 (547)
++..|+..|.+|.+.+.... ..+.+-.+.+.++|++|..=++.+ +..+ .|+||+++|.+--..
T Consensus 167 ~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~p-- 244 (296)
T PRK08306 167 LARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKP-- 244 (296)
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCC--
Confidence 55666666766666543210 122333466789999997655553 3333 389999999986321
Q ss_pred ccccchHHHHHhhcCCeEEEE
Q 008963 452 WAAETYYGEPARKLGLKYIGY 472 (547)
Q Consensus 452 ~~~~~~Y~~lA~~~Gl~Y~~y 472 (547)
....| ..|+..|++.+.+
T Consensus 245 --ggtd~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 245 --GGTDF-EYAEKRGIKALLA 262 (296)
T ss_pred --CCcCe-eehhhCCeEEEEE
Confidence 11234 4678888888644
No 27
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.76 E-value=60 Score=34.11 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=50.1
Q ss_pred CCEEEEEecCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEE
Q 008963 367 KPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFI 443 (547)
Q Consensus 367 rprlliIsR~~s--R~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vI 443 (547)
.-++++|.|+.. |- +..+|.+.|..|.+... .+ .+..+.+++|||+|+.=| ++|-..=|.+||++||
T Consensus 157 Gk~vvVvGrs~~VG~P------la~lL~~~gAtVtv~hs-~t---~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVI 226 (285)
T PRK14191 157 GKDVVIIGASNIVGKP------LAMLMLNAGASVSVCHI-LT---KDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVV 226 (285)
T ss_pred CCEEEEECCCchhHHH------HHHHHHHCCCEEEEEeC-Cc---HHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEE
Confidence 457889998853 33 56677778999988752 12 223467899999888776 4565556779999999
Q ss_pred EEe
Q 008963 444 QVI 446 (547)
Q Consensus 444 EI~ 446 (547)
.+=
T Consensus 227 DvG 229 (285)
T PRK14191 227 DIG 229 (285)
T ss_pred Eee
Confidence 974
No 28
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.47 E-value=75 Score=33.42 Aligned_cols=71 Identities=21% Similarity=0.429 Sum_probs=51.5
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|+.. +. .=+..+|.+.|..|.+... .+-++. +..++|||+|..=| +++-..=|..||++||-+
T Consensus 157 Gk~vvVvGrS~i---VG-kPla~lL~~~~atVtichs-~T~~l~---~~~~~ADIvI~AvG~~~~i~~~~vk~GavVIDv 228 (284)
T PRK14170 157 GKRAVVIGRSNI---VG-KPVAQLLLNENATVTIAHS-RTKDLP---QVAKEADILVVATGLAKFVKKDYIKPGAIVIDV 228 (284)
T ss_pred CCEEEEECCCCc---ch-HHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEEEEc
Confidence 347899998864 11 1266777778889988753 333443 45899999988777 577777788999999986
No 29
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.09 E-value=73 Score=33.50 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=51.4
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|++. =-.-+..+|.+.|..|.+... .+.++. ..+++||++|..=| +++-+.=|++||++||-+
T Consensus 158 Gk~vvViGrs~i----VGkPla~lL~~~~atVt~~hs-~t~~l~---~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDV 229 (285)
T PRK14189 158 GAHAVVIGRSNI----VGKPMAMLLLQAGATVTICHS-KTRDLA---AHTRQADIVVAAVGKRNVLTADMVKPGATVIDV 229 (285)
T ss_pred CCEEEEECCCCc----cHHHHHHHHHHCCCEEEEecC-CCCCHH---HHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEc
Confidence 457889988864 112477788888999988653 233343 56889999988776 456667789999999886
No 30
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=42.23 E-value=1.1e+02 Score=32.04 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCEEEEEecC-CCC-----CHH-HHHHHHhcCCeEEee----------chh--------hhhhhhccCCC
Q 008963 385 NSLVKMAEDIGFQVQVVRPD-RTS-----ELA-KIYRALNSSDVMVGV----------HGA--------AMTHFLFMKPG 439 (547)
Q Consensus 385 ~Evv~~lk~~GfeV~v~e~~-~~~-----s~~-eQi~l~~~aDVlVGv----------HGA--------GLTN~lFmppg 439 (547)
-++++.|.+.|++|.+..+. +.. .+. ..-+.+.+||++|.| ++. .-..+=-||+|
T Consensus 15 ~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~ 94 (296)
T PRK08306 15 LELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEH 94 (296)
T ss_pred HHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCC
Confidence 47889999999999986542 111 111 123568999999988 433 22345578999
Q ss_pred cEEEEEecCCCCccccchHHHHHhhcCCeEEEEE
Q 008963 440 SVFIQVIPLGTDWAAETYYGEPARKLGLKYIGYT 473 (547)
Q Consensus 440 a~vIEI~P~g~~~~~~~~Y~~lA~~~Gl~Y~~y~ 473 (547)
..++ . |+ ..+.....+...|+..+.|.
T Consensus 95 ~~v~--~--G~---~~~~~~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 95 CTIF--S--GI---ANPYLKELAKETNRKLVELF 121 (296)
T ss_pred CEEE--E--ec---CCHHHHHHHHHCCCeEEEEe
Confidence 7544 2 31 12335577889999987664
No 31
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=41.28 E-value=66 Score=26.99 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCEEEEEec---CCCCCHHHHHHHHhcCCeEEeechhh
Q 008963 386 SLVKMAEDIGFQVQVVRP---DRTSELAKIYRALNSSDVMVGVHGAA 429 (547)
Q Consensus 386 Evv~~lk~~GfeV~v~e~---~~~~s~~eQi~l~~~aDVlVGvHGAG 429 (547)
.+.+.+.+.|+..+.++. ....+..-.++.+.+||++||+=|.-
T Consensus 17 ~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~r 63 (83)
T PF13271_consen 17 ALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNR 63 (83)
T ss_pred HHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccc
Confidence 455777777887776553 23456677788999999999988754
No 32
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=40.64 E-value=83 Score=34.02 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=51.8
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|... +-- =+..+|.+.|..|.+... .+.++ -+..++|||+|..=| +++...=|.+||++||-+
T Consensus 214 GK~vvVIGRS~i---VGk-Pla~LL~~~~ATVTicHs-~T~nl---~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDV 285 (345)
T PLN02897 214 GKNAVVIGRSNI---VGL-PMSLLLQRHDATVSTVHA-FTKDP---EQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDV 285 (345)
T ss_pred CCEEEEECCCcc---ccH-HHHHHHHHCCCEEEEEcC-CCCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEc
Confidence 346889998864 111 256677778888888753 34444 456899999887766 678888899999999986
No 33
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=40.29 E-value=61 Score=35.35 Aligned_cols=101 Identities=18% Similarity=0.301 Sum_probs=71.6
Q ss_pred CCCEEEEEecCC--CccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeec---hhhhhhhhccCCCc
Q 008963 366 KKPKLVILSRNG--SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH---GAAMTHFLFMKPGS 440 (547)
Q Consensus 366 ~rprlliIsR~~--sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvH---GAGLTN~lFmppga 440 (547)
.++++-||.-.. ...--|..|+.+.|++.|.+|..+-+ ...+++| ++-+.+|++-|.++ |..++..|--.=|.
T Consensus 161 ~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~-~~~~~~~-i~~~~~A~lniv~~~~~~~~~a~~L~~~~Gi 238 (430)
T cd01981 161 EKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIP-EGASVDD-LNELPKAWFNIVPYREYGLSAALYLEEEFGM 238 (430)
T ss_pred CCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEc-CCCCHHH-HHhhhhCeEEEEecHHHHHHHHHHHHHHhCC
Confidence 345666765432 24467888999999999999987654 3456654 56677788766654 45566666656676
Q ss_pred EEEEEecCCCCccccchHHHHHhhcCCeE
Q 008963 441 VFIQVIPLGTDWAAETYYGEPARKLGLKY 469 (547)
Q Consensus 441 ~vIEI~P~g~~~~~~~~Y~~lA~~~Gl~Y 469 (547)
-.+...|+|++ ....|.+.+++.+|+..
T Consensus 239 P~~~~~p~G~~-~t~~~l~~i~~~~g~~~ 266 (430)
T cd01981 239 PSVKITPIGVV-ATARFLREIQELLGIQI 266 (430)
T ss_pred CeEeccCCChH-HHHHHHHHHHHHhCCcc
Confidence 67777999964 24678999999999773
No 34
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.51 E-value=96 Score=32.56 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=51.3
Q ss_pred CEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 368 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 368 prlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
-++++|.|+.. +- .=+..+|.+.|..|.+... .+.++. +..++|||+|..=| +++-..=|.+||++||-+
T Consensus 157 k~vvViGrS~i---VG-kPla~lL~~~~atVtichs-~T~~l~---~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDv 227 (282)
T PRK14169 157 KRVVIVGRSNI---VG-RPLAGLMVNHDATVTIAHS-KTRNLK---QLTKEADILVVAVGVPHFIGADAVKPGAVVIDV 227 (282)
T ss_pred CEEEEECCCcc---ch-HHHHHHHHHCCCEEEEECC-CCCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCcEEEEe
Confidence 47889998864 11 1366777778989988753 344444 46899999887766 677777889999999986
No 35
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.40 E-value=98 Score=32.56 Aligned_cols=71 Identities=15% Similarity=0.353 Sum_probs=51.4
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|+.. =-.=+..+|.+.|..|.+... .+-++. +..++|||+|+.=| +++-..=|.+||++||-+
T Consensus 159 Gk~vvViGrS~i----VGkPla~lL~~~~atVt~chs-~T~~l~---~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDv 230 (284)
T PRK14177 159 GKNAVVVGRSPI----LGKPMAMLLTEMNATVTLCHS-KTQNLP---SIVRQADIIVGAVGKPEFIKADWISEGAVLLDA 230 (284)
T ss_pred CCEEEEECCCCc----chHHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEe
Confidence 346889988764 112367777788999988763 344444 55899999987766 567677788999999986
No 36
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.03 E-value=98 Score=32.46 Aligned_cols=70 Identities=17% Similarity=0.350 Sum_probs=50.6
Q ss_pred CEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 368 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 368 prlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
-++++|.|+.. + -.=+..+|.+.|..|.+... .+-++. +..++|||+|..=| +++-..=|.+||++||-+
T Consensus 159 k~vvViGrS~~---V-GkPla~lL~~~~AtVt~chs-~T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDv 229 (278)
T PRK14172 159 KEVVVIGRSNI---V-GKPVAQLLLNENATVTICHS-KTKNLK---EVCKKADILVVAIGRPKFIDEEYVKEGAIVIDV 229 (278)
T ss_pred CEEEEECCCcc---c-hHHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEe
Confidence 46889988864 1 11366777788999988753 334444 45789999988766 566667788999999987
No 37
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=38.46 E-value=81 Score=35.61 Aligned_cols=101 Identities=19% Similarity=0.330 Sum_probs=72.9
Q ss_pred CCCCEEEEEecC--CCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCC--C
Q 008963 365 SKKPKLVILSRN--GSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKP--G 439 (547)
Q Consensus 365 ~~rprlliIsR~--~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmpp--g 439 (547)
..++++-||.=. +.+.--|..||.+.|++.|.+|..+-+ ...++ ++++-+.+|++-|.+++ .|..=.-+|.. |
T Consensus 156 ~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p-~g~s~-~di~~l~~A~~nivl~~~~g~~~A~~Lee~fG 233 (519)
T PRK02910 156 TARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAP-LGASP-ADLKRLPAAWFNVVLYREIGESAARYLEREFG 233 (519)
T ss_pred CCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeC-CCCCH-HHHHhcccCcEEEEeCHHHHHHHHHHHHHHhC
Confidence 346777777542 234557888999999999999988765 34565 55677899999988887 56655566553 4
Q ss_pred cEEEEEecCCCCccccchHHHHHhhcCCe
Q 008963 440 SVFIQVIPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 440 a~vIEI~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
.-.+...|.|++ ....|-..+|+.+|+.
T Consensus 234 iP~i~~~PiG~~-~T~~fL~~la~~~g~~ 261 (519)
T PRK02910 234 QPYVKTVPIGVG-ATARFIREVAELLNLD 261 (519)
T ss_pred CcccccccccHH-HHHHHHHHHHHHhCCC
Confidence 445677999963 2456789999999975
No 38
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.88 E-value=1.1e+02 Score=32.23 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=51.2
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|+.. + -.=+..+|.+.|..|.+... .+.++. +.+++|||+|..=| +++-..=|.+||++||-+
T Consensus 157 Gk~vvViGrS~i---V-GkPla~lL~~~~AtVtichs-~T~nl~---~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDv 228 (282)
T PRK14182 157 GKRALVVGRSNI---V-GKPMAMMLLERHATVTIAHS-RTADLA---GEVGRADILVAAIGKAELVKGAWVKEGAVVIDV 228 (282)
T ss_pred CCEEEEECCCCc---c-hHHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEEEEe
Confidence 346889998864 1 11366777778888888753 344454 46799999988766 566777788999999986
No 39
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.85 E-value=1e+02 Score=32.43 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=50.5
Q ss_pred CEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 368 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 368 prlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
-++++|.|+.. --.=+..+|.+.|..|.+... .+.++. +..++|||+|..=| +++-..=|.+||++||-+
T Consensus 160 K~vvViGrS~i----VGkPla~lL~~~~ATVtichs-~T~~L~---~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDv 230 (288)
T PRK14171 160 KNVVIIGRSNI----VGKPLSALLLKENCSVTICHS-KTHNLS---SITSKADIVVAAIGSPLKLTAEYFNPESIVIDV 230 (288)
T ss_pred CEEEEECCCCc----chHHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEccCCCCccCHHHcCCCCEEEEe
Confidence 36889988763 112366777778989988753 344444 46889999998777 556667788999999886
No 40
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.54 E-value=1.1e+02 Score=32.22 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=51.1
Q ss_pred CEEEEEecCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEE
Q 008963 368 PKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQ 444 (547)
Q Consensus 368 prlliIsR~~s--R~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIE 444 (547)
-++++|.|+.. |- +..+|.+.|..|.+... .+-++ .+.+++|||+|..=| ++|-..=|.+||++||.
T Consensus 158 k~vvViGrS~~VG~P------la~lL~~~~AtVti~hs-~T~~l---~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvID 227 (281)
T PRK14183 158 KDVCVVGASNIVGKP------MAALLLNANATVDICHI-FTKDL---KAHTKKADIVIVGVGKPNLITEDMVKEGAIVID 227 (281)
T ss_pred CEEEEECCCCcchHH------HHHHHHHCCCEEEEeCC-CCcCH---HHHHhhCCEEEEecCcccccCHHHcCCCcEEEE
Confidence 47889998864 32 66777778888887642 23334 357899999888776 67777788899999998
Q ss_pred Ee
Q 008963 445 VI 446 (547)
Q Consensus 445 I~ 446 (547)
+=
T Consensus 228 vG 229 (281)
T PRK14183 228 IG 229 (281)
T ss_pred ee
Confidence 63
No 41
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=37.40 E-value=73 Score=28.59 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccC-CCcEEEEEecCCCCccccchHHHHHh
Q 008963 385 NSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMK-PGSVFIQVIPLGTDWAAETYYGEPAR 463 (547)
Q Consensus 385 ~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmp-pga~vIEI~P~g~~~~~~~~Y~~lA~ 463 (547)
++.++.|++ |++|.+.+ ..+-.+..+.+..+|++|+-++..++--++-. |+-.+|...--|+++.. -..|+
T Consensus 9 ~~~~~~l~~-~~~v~~~~---~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id----~~~a~ 80 (133)
T PF00389_consen 9 DEEIERLEE-GFEVEFCD---SPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID----LEAAK 80 (133)
T ss_dssp HHHHHHHHH-TSEEEEES---SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-----HHHHH
T ss_pred HHHHHHHHC-CceEEEeC---CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc----HHHHh
Confidence 567788888 88888765 57788889999999999997777566555533 88888888877754332 34566
Q ss_pred hcCCeE
Q 008963 464 KLGLKY 469 (547)
Q Consensus 464 ~~Gl~Y 469 (547)
..|+..
T Consensus 81 ~~gI~V 86 (133)
T PF00389_consen 81 ERGIPV 86 (133)
T ss_dssp HTTSEE
T ss_pred hCeEEE
Confidence 778776
No 42
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=37.19 E-value=1.3e+02 Score=33.90 Aligned_cols=101 Identities=14% Similarity=0.276 Sum_probs=72.4
Q ss_pred CCCCEEEEEecC--CCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEee-chhhhhhhhccCC--C
Q 008963 365 SKKPKLVILSRN--GSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGV-HGAAMTHFLFMKP--G 439 (547)
Q Consensus 365 ~~rprlliIsR~--~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGv-HGAGLTN~lFmpp--g 439 (547)
..++++=||.-. +.+.--|..||.+.|+..|.+|..+-+. ..+++| ++-+.+|++=|.+ +-.|+.-+=+|.. |
T Consensus 161 ~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~-g~sl~d-i~~~~~A~~NIvl~~~~g~~~A~~Le~~fg 238 (513)
T CHL00076 161 TDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPE-GGSVED-LKNLPKAWFNIVPYREVGLMTAKYLEKEFG 238 (513)
T ss_pred CCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECC-CCCHHH-HHhcccCcEEEEechhhhHHHHHHHHHHhC
Confidence 346677777654 3355678899999999999999876653 467655 5668888887766 3366655666664 5
Q ss_pred cEEEEEecCCCCccccchHHHHHhhcCCe
Q 008963 440 SVFIQVIPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 440 a~vIEI~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
.-.+...|.|+. ....|-+.+|+.+|+.
T Consensus 239 iP~i~~~PiGi~-~T~~fLr~la~~lg~~ 266 (513)
T CHL00076 239 MPYISTTPMGIV-DTAECIRQIQKILNKL 266 (513)
T ss_pred CCeEeeccCCHH-HHHHHHHHHHHHhCCC
Confidence 666778899953 2456789999999964
No 43
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.68 E-value=1.1e+02 Score=32.15 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=51.2
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|+.. =-.-+..+|.+.|..|.+..- .+-++ -+.+++|||+|..=| +++-..=|.+||++||-+
T Consensus 159 Gk~vvViGrs~i----VG~Pla~lL~~~~atVtv~hs-~T~~l---~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDv 230 (285)
T PRK10792 159 GLNAVVVGASNI----VGRPMSLELLLAGCTVTVCHR-FTKNL---RHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDV 230 (285)
T ss_pred CCEEEEECCCcc----cHHHHHHHHHHCCCeEEEEEC-CCCCH---HHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEc
Confidence 346888988763 111366777888999988763 23333 346899999998776 566666778999999987
Q ss_pred e
Q 008963 446 I 446 (547)
Q Consensus 446 ~ 446 (547)
=
T Consensus 231 G 231 (285)
T PRK10792 231 G 231 (285)
T ss_pred c
Confidence 4
No 44
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=35.57 E-value=1.1e+02 Score=33.42 Aligned_cols=70 Identities=21% Similarity=0.371 Sum_probs=51.2
Q ss_pred CEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 368 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 368 prlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
-++++|.|... +- .=+..+|.+.|..|.+... .+-++. +..++|||+|..=| +++...=|.+||++||-+
T Consensus 232 K~vvVIGRS~i---VG-kPLa~LL~~~~ATVTicHs-~T~nl~---~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDV 302 (364)
T PLN02616 232 KRAVVIGRSNI---VG-MPAALLLQREDATVSIVHS-RTKNPE---EITREADIIISAVGQPNMVRGSWIKPGAVVIDV 302 (364)
T ss_pred CEEEEECCCcc---cc-HHHHHHHHHCCCeEEEeCC-CCCCHH---HHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEec
Confidence 46889988863 11 1366777778888988753 344454 45799999887766 677777789999999986
No 45
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.19 E-value=1.2e+02 Score=32.12 Aligned_cols=70 Identities=26% Similarity=0.392 Sum_probs=49.9
Q ss_pred CEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 368 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 368 prlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
-++++|.|+.. +- .=+..+|.+.|..|.+... .+.++. +..++|||+|..=| +++-..=|.+||++||-+
T Consensus 159 k~vvVIGrS~i---VG-kPla~lL~~~~atVtv~hs-~T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDv 229 (297)
T PRK14186 159 KKAVVVGRSIL---VG-KPLALMLLAANATVTIAHS-RTQDLA---SITREADILVAAAGRPNLIGAEMVKPGAVVVDV 229 (297)
T ss_pred CEEEEECCCcc---ch-HHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCEEEEe
Confidence 46889998864 11 1366777788999988753 344444 46789999998766 455556688999999886
No 46
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=35.17 E-value=93 Score=32.76 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=54.3
Q ss_pred CCCEEEEEecCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEE
Q 008963 366 KKPKLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 442 (547)
Q Consensus 366 ~rprlliIsR~~s--R~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~v 442 (547)
..-++++|.|+.. |= +..+|...+..|.+..- .+ ++-.+..++|||+|..=| +++-..=|..||++|
T Consensus 155 ~Gk~~vVVGrS~iVGkP------la~lL~~~naTVtvcHs-~T---~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavV 224 (283)
T COG0190 155 RGKNVVVVGRSNIVGKP------LALLLLNANATVTVCHS-RT---KDLASITKNADIVVVAVGKPHFIKADMVKPGAVV 224 (283)
T ss_pred CCCEEEEECCCCcCcHH------HHHHHHhCCCEEEEEcC-CC---CCHHHHhhhCCEEEEecCCccccccccccCCCEE
Confidence 3457889999874 43 67788889999998753 23 344577899999988877 678888899999999
Q ss_pred EEE
Q 008963 443 IQV 445 (547)
Q Consensus 443 IEI 445 (547)
|-+
T Consensus 225 IDV 227 (283)
T COG0190 225 IDV 227 (283)
T ss_pred Eec
Confidence 986
No 47
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=35.10 E-value=1.1e+02 Score=29.12 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=45.3
Q ss_pred CCEEEEEecC---CCccccCHHHHHHHHHHcCCEEEEEe--cCCCCCHHHHHHHH---hcCCeEEeechhhhhhhhccCC
Q 008963 367 KPKLVILSRN---GSRAITNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRAL---NSSDVMVGVHGAAMTHFLFMKP 438 (547)
Q Consensus 367 rprlliIsR~---~sR~IlNe~Evv~~lk~~GfeV~v~e--~~~~~s~~eQi~l~---~~aDVlVGvHGAGLTN~lFmpp 438 (547)
++|+.+|.=. +...=.|-.-+.+.+++.|+++.... +++...+.+.++-. +.+|++|.-=|+|.+--=+.|+
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~e 83 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPE 83 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHH
Confidence 4566554322 22223455667788999999887543 34334566666554 4699999998888775544443
No 48
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.00 E-value=1.2e+02 Score=31.96 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=50.2
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|+.. +- .=+..+|.+.|..|.+... .+.++. ...++|||+|..=| +++-..=|.+||++||-+
T Consensus 155 Gk~vvViGrS~i---VG-kPla~lL~~~~aTVtichs-~T~~l~---~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDV 226 (287)
T PRK14173 155 GKEVVVVGRSNI---VG-KPLAALLLREDATVTLAHS-KTQDLP---AVTRRADVLVVAVGRPHLITPEMVRPGAVVVDV 226 (287)
T ss_pred CCEEEEECCCCc---cH-HHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEEEEc
Confidence 347889998864 11 1266677778888888753 344444 56889999888776 556666678899999985
No 49
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.60 E-value=1.2e+02 Score=31.78 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=50.9
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|+.. + -.=+..+|.+.|..|.+... .+-++. +..++|||+|..=| +++-..=|.+||++||-+
T Consensus 157 Gk~vvVvGrS~i---V-GkPla~lL~~~~atVt~chs-~T~nl~---~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDv 228 (282)
T PRK14166 157 GKDAVIIGASNI---V-GRPMATMLLNAGATVSVCHI-KTKDLS---LYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDV 228 (282)
T ss_pred CCEEEEECCCCc---c-hHHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEe
Confidence 346889998864 1 11366777778999988753 233333 46899999888766 567777789999999986
No 50
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=34.07 E-value=90 Score=31.19 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=50.1
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEec-------------CCCC---CHHH-HHHHHhcCCeEEeechh-
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRP-------------DRTS---ELAK-IYRALNSSDVMVGVHGA- 428 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~-------------~~~~---s~~e-Qi~l~~~aDVlVGvHGA- 428 (547)
.-++++|.|+.. +. .-+..+|.+.|..|.+.+- .... +... -.+.+++|||+|..=|-
T Consensus 62 GK~vvVIGrS~i---VG-kPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~ 137 (197)
T cd01079 62 GKTITIINRSEV---VG-RPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSP 137 (197)
T ss_pred CCEEEEECCCcc---ch-HHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCC
Confidence 457899988863 11 1367777788999988731 0111 2122 23568999999887664
Q ss_pred hh-hhhhccCCCcEEEEE
Q 008963 429 AM-THFLFMKPGSVFIQV 445 (547)
Q Consensus 429 GL-TN~lFmppga~vIEI 445 (547)
++ ...=|..||++||-+
T Consensus 138 ~~~i~~d~ik~GavVIDV 155 (197)
T cd01079 138 NYKVPTELLKDGAICINF 155 (197)
T ss_pred CCccCHHHcCCCcEEEEc
Confidence 44 567788999999885
No 51
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.82 E-value=1e+02 Score=32.33 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=51.1
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|+.. +- .=+..+|.+.|..|.+... .+-++. +..++|||+|..=| +++-..=|.+||++||-+
T Consensus 158 Gk~vvViGrS~~---VG-kPla~lL~~~~ATVt~chs-~T~dl~---~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDv 229 (282)
T PRK14180 158 GAYAVVVGASNV---VG-KPVSQLLLNAKATVTTCHR-FTTDLK---SHTTKADILIVAVGKPNFITADMVKEGAVVIDV 229 (282)
T ss_pred CCEEEEECCCCc---ch-HHHHHHHHHCCCEEEEEcC-CCCCHH---HHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEe
Confidence 346889998864 11 1366777778989988753 233444 45899999988776 567777788999999986
No 52
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=32.41 E-value=1.5e+02 Score=28.98 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=44.4
Q ss_pred CCCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh
Q 008963 366 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA 429 (547)
Q Consensus 366 ~rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG 429 (547)
..+++++|.-...-.=...++..+++++.|++++.+......+-.+..+.+.+||+++=.=|.-
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~ 91 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQ 91 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcH
Confidence 5789999976553222334568888899999887655322245678889999999987554544
No 53
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.12 E-value=77 Score=34.75 Aligned_cols=97 Identities=9% Similarity=0.045 Sum_probs=64.8
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh---hhhhhccCCCcEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA---MTHFLFMKPGSVFI 443 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG---LTN~lFmppga~vI 443 (547)
...|-||. ....--|..|+.+.|++.|.+|...-+ ...+++| ++-+.+|.+-|.+...+ ++..|==+=|.-.+
T Consensus 172 ~~~VNiiG--~~~~~~d~~el~~lL~~~Gi~v~~~~~-~~~t~ee-i~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~ 247 (421)
T cd01976 172 PYDVNIIG--DYNIGGDAWASRILLEEMGLRVVAQWS-GDGTLNE-MENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWM 247 (421)
T ss_pred CCeEEEEe--cCCCCccHHHHHHHHHHcCCeEEEEeC-CCCCHHH-HHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEE
Confidence 45566664 122345778999999999999985433 4566655 56677787766664322 34444333467777
Q ss_pred EEecCCCCccccchHHHHHhhcCCe
Q 008963 444 QVIPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 444 EI~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
+..|+|++ ....|++.+|+..|..
T Consensus 248 ~~~p~Gi~-~t~~~l~~ia~~~g~~ 271 (421)
T cd01976 248 EYNFFGPT-KIAESLRKIAAYFDDE 271 (421)
T ss_pred ecccCCHH-HHHHHHHHHHHHhCch
Confidence 77799864 2467899999999864
No 54
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.98 E-value=1.4e+02 Score=31.37 Aligned_cols=71 Identities=14% Similarity=0.301 Sum_probs=49.5
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHc----CCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDI----GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSV 441 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~----GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~ 441 (547)
.-++++|.|+.. +- .=+..+|.+. +..|.+... .+.++. +.+++|||+|..=| +++...=|.+||++
T Consensus 153 Gk~vvViGrS~i---VG-kPla~lL~~~~~~~~AtVtvchs-~T~~l~---~~~~~ADIvV~AvG~p~~i~~~~ik~Gav 224 (287)
T PRK14181 153 GRHVAIVGRSNI---VG-KPLAALLMQKHPDTNATVTLLHS-QSENLT---EILKTADIIIAAIGVPLFIKEEMIAEKAV 224 (287)
T ss_pred CCEEEEECCCcc---ch-HHHHHHHHhCcCCCCCEEEEeCC-CCCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCE
Confidence 346889998864 11 1256666666 678887752 334444 45799999987766 56777778999999
Q ss_pred EEEE
Q 008963 442 FIQV 445 (547)
Q Consensus 442 vIEI 445 (547)
||-+
T Consensus 225 VIDv 228 (287)
T PRK14181 225 IVDV 228 (287)
T ss_pred EEEe
Confidence 9986
No 55
>PRK13337 putative lipid kinase; Reviewed
Probab=31.68 E-value=3.7e+02 Score=27.81 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=46.1
Q ss_pred cCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH--hcCCeEEeechhhhhhhhc---c-CCCcEEEEEecCCC
Q 008963 382 TNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL--NSSDVMVGVHGAAMTHFLF---M-KPGSVFIQVIPLGT 450 (547)
Q Consensus 382 lNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~--~~aDVlVGvHGAGLTN~lF---m-ppga~vIEI~P~g~ 450 (547)
...+++.+.+++.|+++.+......-...+.++.. ...|++|.+=|=|..|.+= + .+....|=|+|.|+
T Consensus 19 ~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~GT 93 (304)
T PRK13337 19 KNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVGT 93 (304)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCcC
Confidence 34668889999999887665543345566666544 4579999888887654432 3 22234688899984
No 56
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.46 E-value=1.5e+02 Score=31.42 Aligned_cols=71 Identities=18% Similarity=0.341 Sum_probs=45.6
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHH----cCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhh-hhhhhccCCCcE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAED----IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAA-MTHFLFMKPGSV 441 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~----~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAG-LTN~lFmppga~ 441 (547)
.-++++|.|+.. +.- =+..+|.+ .|..|.+... .+.++ .+.+++|||+|+.=|-. +-..=|.+||++
T Consensus 159 Gk~vvViGrS~i---VG~-Pla~lL~~~~~~~~atVt~~hs-~t~~l---~~~~~~ADIvI~Avg~~~li~~~~vk~Gav 230 (295)
T PRK14174 159 GKHCVVVGRSNI---VGK-PMANLMLQKLKESNCTVTICHS-ATKDI---PSYTRQADILIAAIGKARFITADMVKPGAV 230 (295)
T ss_pred CCEEEEECCCCc---chH-HHHHHHHhccccCCCEEEEEeC-CchhH---HHHHHhCCEEEEecCccCccCHHHcCCCCE
Confidence 346889998864 111 13334433 6888888753 23333 45689999999987654 333335689999
Q ss_pred EEEE
Q 008963 442 FIQV 445 (547)
Q Consensus 442 vIEI 445 (547)
||-+
T Consensus 231 VIDV 234 (295)
T PRK14174 231 VIDV 234 (295)
T ss_pred EEEe
Confidence 9886
No 57
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=31.09 E-value=76 Score=30.53 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHh-cCCeEEeechhh---hhhhhccC
Q 008963 385 NSLVKMAEDIGFQVQVVRPDRTSELAKIYRALN-SSDVMVGVHGAA---MTHFLFMK 437 (547)
Q Consensus 385 ~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~-~aDVlVGvHGAG---LTN~lFmp 437 (547)
+++++..+++|++|..+.......+.+....+. .+-|++|.-|+| |.|.|.-.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 578899999999999988655677888777774 677799999998 77777654
No 58
>PF11595 DUF3245: Protein of unknown function (DUF3245); InterPro: IPR021641 This is a family of proteins conserved in fungi. The function is not known, and there is no S. cerevisiae member.
Probab=31.08 E-value=23 Score=33.80 Aligned_cols=14 Identities=64% Similarity=0.969 Sum_probs=8.9
Q ss_pred CCCCCchHHHHhcc
Q 008963 30 DGDDDDDEESRAGA 43 (547)
Q Consensus 30 ~~~~~~~~~~~~~~ 43 (547)
++||||+||||+.+
T Consensus 125 ~~d~ddEeesRss~ 138 (149)
T PF11595_consen 125 DDDDDDEEESRSSL 138 (149)
T ss_pred ccccccchhhhHHH
Confidence 55666667888433
No 59
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=30.91 E-value=1.5e+02 Score=31.35 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=50.5
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|+.. +. .=+..+|.+.|..|.+... .+-++. +..++|||+|..=| +++-..=|..||++||-+
T Consensus 167 Gk~vvVIGRS~i---VG-kPla~lL~~~~ATVtvchs-~T~nl~---~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDv 238 (299)
T PLN02516 167 GKKAVVVGRSNI---VG-LPVSLLLLKADATVTVVHS-RTPDPE---SIVREADIVIAAAGQAMMIKGDWIKPGAAVIDV 238 (299)
T ss_pred CCEEEEECCCcc---ch-HHHHHHHHHCCCEEEEeCC-CCCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEe
Confidence 357899998864 11 1366777778999998753 344444 46799999887765 455566678899999886
Q ss_pred e
Q 008963 446 I 446 (547)
Q Consensus 446 ~ 446 (547)
=
T Consensus 239 G 239 (299)
T PLN02516 239 G 239 (299)
T ss_pred e
Confidence 3
No 60
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=30.72 E-value=2.6e+02 Score=28.97 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=55.6
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHcCCE--EEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhh---------hhccC
Q 008963 369 KLVILSRNGSRAITNENSLVKMAEDIGFQ--VQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTH---------FLFMK 437 (547)
Q Consensus 369 rlliIsR~~sR~IlNe~Evv~~lk~~Gfe--V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN---------~lFmp 437 (547)
++++++|+.. .....+++.+.+.+.+.. +...+. .+..+.-+.+..+|+||----.||.. .-+++
T Consensus 152 ~V~I~~R~~~-~~~~a~~l~~~l~~~~~~~~~~~~d~---~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~ 227 (289)
T PRK12548 152 EITIFNIKDD-FYERAEQTAEKIKQEVPECIVNVYDL---NDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFR 227 (289)
T ss_pred EEEEEeCCch-HHHHHHHHHHHHhhcCCCceeEEech---hhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcC
Confidence 4888888641 112235566666554433 222221 12222334667889999777766643 22578
Q ss_pred CCcEEEEEecCCCCccccchHHHHHhhcCCeE
Q 008963 438 PGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 469 (547)
Q Consensus 438 pga~vIEI~P~g~~~~~~~~Y~~lA~~~Gl~Y 469 (547)
++.+|++++=.. .++-+-..|+..|.+.
T Consensus 228 ~~~~v~D~vY~P----~~T~ll~~A~~~G~~~ 255 (289)
T PRK12548 228 KDLVVADTVYNP----KKTKLLEDAEAAGCKT 255 (289)
T ss_pred CCCEEEEecCCC----CCCHHHHHHHHCCCee
Confidence 889999997321 2466888999999775
No 61
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=29.82 E-value=2e+02 Score=26.73 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=42.2
Q ss_pred CCCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCe-EEee
Q 008963 366 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDV-MVGV 425 (547)
Q Consensus 366 ~rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDV-lVGv 425 (547)
++|++++..=.+-..-+...-+..+++..||+|+.+- .+.+.++.++.+.+.++ +|++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG--~~vp~e~i~~~a~~~~~d~V~l 60 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLG--VMTSQEEFIDAAIETDADAILV 60 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCCEEEE
Confidence 3677777665555666666667788899999999875 46899999999876554 4443
No 62
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=29.79 E-value=1.1e+02 Score=33.05 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=62.8
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEee-chhhhhhhhcc--CCCcEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGV-HGAAMTHFLFM--KPGSVFI 443 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGv-HGAGLTN~lFm--ppga~vI 443 (547)
+..|-||.= ....-|.+|+.+.|++.|.+|+.+-+ ...+++| ++-+.+|.+-|.+ +.+|.-=+=+| +=|.-.+
T Consensus 158 ~~~VNiig~--~~~~~d~~el~~lL~~~Gl~v~~~~~-~~~s~ee-i~~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~ 233 (410)
T cd01968 158 PYDINLIGE--FNVAGELWGVKPLLEKLGIRVLASIT-GDSRVDE-IRRAHRAKLNVVQCSKSMIYLARKMEEKYGIPYI 233 (410)
T ss_pred CCcEEEECC--CCCcccHHHHHHHHHHcCCeEEEEeC-CCCCHHH-HHhhhhCcEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 345556652 23345778999999999999986543 4567766 4556777766644 22332223333 3366667
Q ss_pred EEecCCCCccccchHHHHHhhcCCe
Q 008963 444 QVIPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 444 EI~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
...|+|++. ...+++.+|+.+|..
T Consensus 234 ~~~p~G~~~-t~~~l~~ia~~~g~~ 257 (410)
T cd01968 234 EVSFYGIRD-TSKSLRNIAELLGDE 257 (410)
T ss_pred ecCcCcHHH-HHHHHHHHHHHhCCc
Confidence 777888643 467899999999964
No 63
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.50 E-value=1.6e+02 Score=30.98 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=50.5
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
.-++++|.|+.. =-.-+..+|.+.|..|.+... .+-++ -+..++|||+|..=| +++-..=|.+||++||-+
T Consensus 164 Gk~vvViGrs~i----VGkPla~lL~~~~atVtv~hs-~T~~l---~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDv 235 (287)
T PRK14176 164 GKNAVIVGHSNV----VGKPMAAMLLNRNATVSVCHV-FTDDL---KKYTLDADILVVATGVKHLIKADMVKEGAVIFDV 235 (287)
T ss_pred CCEEEEECCCcc----cHHHHHHHHHHCCCEEEEEec-cCCCH---HHHHhhCCEEEEccCCccccCHHHcCCCcEEEEe
Confidence 346888988763 112367778888999988763 23334 446899999986433 566667789999999987
Q ss_pred e
Q 008963 446 I 446 (547)
Q Consensus 446 ~ 446 (547)
=
T Consensus 236 G 236 (287)
T PRK14176 236 G 236 (287)
T ss_pred c
Confidence 3
No 64
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.44 E-value=1.6e+02 Score=31.09 Aligned_cols=70 Identities=20% Similarity=0.383 Sum_probs=50.7
Q ss_pred CEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEEEE
Q 008963 368 PKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 368 prlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vIEI 445 (547)
-++++|.|+.. +- .=+..+|.+.|..|.+... .+-++. +..++|||+|..=| +++-..=|.+||++||-+
T Consensus 161 k~vvViGrS~i---VG-kPla~lL~~~~aTVt~chs-~T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDV 231 (294)
T PRK14187 161 SDAVVIGRSNI---VG-KPMACLLLGENCTVTTVHS-ATRDLA---DYCSKADILVAAVGIPNFVKYSWIKKGAIVIDV 231 (294)
T ss_pred CEEEEECCCcc---ch-HHHHHHHhhCCCEEEEeCC-CCCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCEEEEe
Confidence 46889988863 11 1366777778999988753 334444 46899999988777 566667788899999986
No 65
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.32 E-value=10 Score=42.20 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=70.9
Q ss_pred ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEecCCCCccccchH
Q 008963 379 RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYY 458 (547)
Q Consensus 379 R~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~vIEI~P~g~~~~~~~~Y 458 (547)
+.++|+.+ +...++.-|-++...+...+.+.+.++.+++.. +-+|+++..=-.|.+.+..|++-+|++.+.....+|
T Consensus 192 pL~it~~~-~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~--~v~~~~~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~ 268 (475)
T KOG4698|consen 192 PLFITEAE-LRFNKEVQFLITETHSWWDMKFGDVVRQLSNYP--VVDFDAELRTHCFKEAIVGLVSHFPYAVNPTQPPPN 268 (475)
T ss_pred hhhcccch-hcccccEEEEEEEcchhhhhhHHHHHHhcCCCc--eEEecCCceEEEeeeeeeeeeecccccccCCcCCCc
Confidence 67777777 444444333333333335688999999999999 889999999999999999999999999776666777
Q ss_pred HH--HHhhcCCeEEEEEecCCCCcc
Q 008963 459 GE--PARKLGLKYIGYTILPRESSL 481 (547)
Q Consensus 459 ~~--lA~~~Gl~Y~~y~i~~eEssL 481 (547)
+. +.-.+.+-+.+|.....|..+
T Consensus 269 ~~~s~~~fr~~l~~a~~~~i~~~~~ 293 (475)
T KOG4698|consen 269 GTLSMLDFRNLLDKALSPRIPEANV 293 (475)
T ss_pred cccccccHHHHHHHHhccccccccc
Confidence 43 334555666666654433333
No 66
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.50 E-value=1.7e+02 Score=31.03 Aligned_cols=71 Identities=23% Similarity=0.449 Sum_probs=49.3
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHc----CCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDI----GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSV 441 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~----GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~ 441 (547)
.-++++|.|+.. +.- =+..+|.+. +..|.+... .+-++. +.+++|||+|..=| +++-..=|.+||++
T Consensus 161 Gk~vvViGrS~i---VGk-Pla~lL~~~~~~~~atVtv~hs-~T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~gav 232 (297)
T PRK14168 161 GAEVVVVGRSNI---VGK-PIANMMTQKGPGANATVTIVHT-RSKNLA---RHCQRADILIVAAGVPNLVKPEWIKPGAT 232 (297)
T ss_pred CCEEEEECCCCc---ccH-HHHHHHHhcccCCCCEEEEecC-CCcCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCE
Confidence 457889998864 111 255666665 677877642 333444 46799999997655 67778888999999
Q ss_pred EEEE
Q 008963 442 FIQV 445 (547)
Q Consensus 442 vIEI 445 (547)
||-+
T Consensus 233 VIDv 236 (297)
T PRK14168 233 VIDV 236 (297)
T ss_pred EEec
Confidence 9986
No 67
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.03 E-value=1.8e+02 Score=30.62 Aligned_cols=71 Identities=20% Similarity=0.337 Sum_probs=49.2
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHH--cCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAED--IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVFI 443 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~--~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~vI 443 (547)
.-++++|.|+.. +-- =+..+|.+ .+..|.+... .+.++. +.+++|||+|..=| +++-..=|..||++||
T Consensus 158 Gk~vvViGrS~~---VGk-Pla~lL~~~~~~atVtvchs-~T~~l~---~~~k~ADIvV~AvGkp~~i~~~~ik~GavVI 229 (284)
T PRK14193 158 GAHVVVIGRGVT---VGR-PIGLLLTRRSENATVTLCHT-GTRDLA---AHTRRADIIVAAAGVAHLVTADMVKPGAAVL 229 (284)
T ss_pred CCEEEEECCCCc---chH-HHHHHHhhccCCCEEEEeCC-CCCCHH---HHHHhCCEEEEecCCcCccCHHHcCCCCEEE
Confidence 457889998864 111 25556655 6888887753 344444 56889999998777 4566666888999998
Q ss_pred EE
Q 008963 444 QV 445 (547)
Q Consensus 444 EI 445 (547)
-+
T Consensus 230 Dv 231 (284)
T PRK14193 230 DV 231 (284)
T ss_pred Ec
Confidence 85
No 68
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=28.02 E-value=1.8e+02 Score=27.75 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=38.1
Q ss_pred CCCCEEEEEecCC---CccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCe-EEeechhhhhhh
Q 008963 365 SKKPKLVILSRNG---SRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDV-MVGVHGAAMTHF 433 (547)
Q Consensus 365 ~~rprlliIsR~~---sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDV-lVGvHGAGLTN~ 433 (547)
.+|||+++..=.- .|.. .-+..+++..||+|+..- -..+-.|.++..-+.|+ +||+-+-.-.|.
T Consensus 10 g~rprvlvak~GlDgHd~ga---kvia~~l~d~GfeVi~~g--~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGA---KVIARALADAGFEVINLG--LFQTPEEAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred CCCceEEEeccCccccccch---HHHHHHHHhCCceEEecC--CcCCHHHHHHHHHhcCCCEEEEEeccchHH
Confidence 5799998764321 2432 235588889999999754 34566777777644444 445544433333
No 69
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.80 E-value=1.6e+02 Score=31.11 Aligned_cols=71 Identities=20% Similarity=0.349 Sum_probs=49.1
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHc----CCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDI----GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSV 441 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~----GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~ 441 (547)
.-++++|.|+.. +.- =+..+|.+. +..|.+... .+-++. +..++|||+|..=| +++-..=|.+||++
T Consensus 157 Gk~vvViGrS~i---VGk-Pla~lL~~~~~~~~aTVtvchs-~T~~l~---~~~~~ADIvIsAvGkp~~i~~~~ik~gai 228 (297)
T PRK14167 157 GADVVVVGRSDI---VGK-PMANLLIQKADGGNATVTVCHS-RTDDLA---AKTRRADIVVAAAGVPELIDGSMLSEGAT 228 (297)
T ss_pred CCEEEEECCCcc---cHH-HHHHHHhcCccCCCCEEEEeCC-CCCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCE
Confidence 346889998864 111 255555555 678887642 333443 56899999998766 67777888999999
Q ss_pred EEEE
Q 008963 442 FIQV 445 (547)
Q Consensus 442 vIEI 445 (547)
||-+
T Consensus 229 VIDv 232 (297)
T PRK14167 229 VIDV 232 (297)
T ss_pred EEEc
Confidence 9986
No 70
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=27.52 E-value=2.9e+02 Score=30.14 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=64.0
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccC--CCcEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMK--PGSVFI 443 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmp--pga~vI 443 (547)
+.+|-+|. ....--|.+|+.+.|++.|.+++..-+ ...+++| ++-+.+|.+-|.+.+ .|+.-+-+|. =|.-.+
T Consensus 162 ~~~VNliG--~~~~~~d~~ei~~lL~~~Gl~v~~~~~-~~~t~~e-i~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~ 237 (415)
T cd01977 162 DYTINYIG--DYNIQGDTEVLQKYFERMGIQVLSTFT-GNGTYDD-LRWMHRAKLNVVNCARSAGYIANELKKRYGIPRL 237 (415)
T ss_pred CCcEEEEc--cCCCcccHHHHHHHHHHcCCeEEEEEC-CCCCHHH-HHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 34566664 223345677899999999999974433 4567665 677888888665543 3433334444 366677
Q ss_pred EEecCCCCccccchHHHHHhhcCCe
Q 008963 444 QVIPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 444 EI~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
.+.|+|++- ...+++.+|+.+|+.
T Consensus 238 ~~~~~G~~~-t~~~l~~la~~~g~~ 261 (415)
T cd01977 238 DVDGFGFEY-CAESLRKIGAFFGIE 261 (415)
T ss_pred EeccCCHHH-HHHHHHHHHHHhCcc
Confidence 777888642 457899999999965
No 71
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.44 E-value=1.1e+02 Score=33.43 Aligned_cols=100 Identities=13% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecC-----------------CCCCHHHHHHHHhcCCeEEeech-
Q 008963 366 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPD-----------------RTSELAKIYRALNSSDVMVGVHG- 427 (547)
Q Consensus 366 ~rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~-----------------~~~s~~eQi~l~~~aDVlVGvHG- 427 (547)
.+.++-+|.-.. -.--|.+|+.+.|++.|.+++.+-+. ...++ |+++-+.+|.+-|.++-
T Consensus 154 ~~~~VNlig~~~-~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~-e~i~~~~~A~lniv~~~~ 231 (428)
T cd01965 154 KNGKVNLLPGFP-LTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTL-EEIRDAGNAKATIALGEY 231 (428)
T ss_pred CCCeEEEECCCC-CCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcH-HHHHHhccCcEEEEEChh
Confidence 345666664222 11228899999999999999876421 23455 55677888888888877
Q ss_pred hhhhhhhccCC--CcEEEEEe-cCCCCccccchHHHHHhhcCCe
Q 008963 428 AAMTHFLFMKP--GSVFIQVI-PLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 428 AGLTN~lFmpp--ga~vIEI~-P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
+|..-.-+|.. |.-.+..- |+|++ ....|++.+|+.+|..
T Consensus 232 ~~~~~a~~L~e~~GiP~~~~~~p~G~~-~t~~~l~~l~~~~g~~ 274 (428)
T cd01965 232 SGRKAAKALEEKFGVPYILFPTPIGLK-ATDEFLRALSKLSGKP 274 (428)
T ss_pred hhHHHHHHHHHHHCCCeeecCCCcChH-HHHHHHHHHHHHHCCC
Confidence 77766666663 66667765 88864 2457889999988865
No 72
>PRK13054 lipid kinase; Reviewed
Probab=26.89 E-value=4.4e+02 Score=27.19 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=49.8
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH--hcCCeEEeechhhhhh----hhccCC-C-c
Q 008963 369 KLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL--NSSDVMVGVHGAAMTH----FLFMKP-G-S 440 (547)
Q Consensus 369 rlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~--~~aDVlVGvHGAGLTN----~lFmpp-g-a 440 (547)
++++|--.+++.-....++++.+++.|+++.+......-...++++.. .+.|++|.+=|=|-.| .+.=.+ + -
T Consensus 5 ~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~~~~~~ 84 (300)
T PRK13054 5 KSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQLEGDAR 84 (300)
T ss_pred eEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhhccCCC
Confidence 333333333444445667888899999887664433334456666443 5689999988888544 442112 2 2
Q ss_pred EEEEEecCCC
Q 008963 441 VFIQVIPLGT 450 (547)
Q Consensus 441 ~vIEI~P~g~ 450 (547)
.-|=|+|.|.
T Consensus 85 ~~lgiiP~GT 94 (300)
T PRK13054 85 PALGILPLGT 94 (300)
T ss_pred CcEEEEeCCc
Confidence 4688999984
No 73
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.88 E-value=2e+02 Score=26.51 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=40.3
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCe-EEeechhhhhhhhcc
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDV-MVGVHGAAMTHFLFM 436 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDV-lVGvHGAGLTN~lFm 436 (547)
+||+++..=.+--.=.--+=+..+++..||+|+-.. ...+.++.++...+.++ +||+-+.-=+++-.|
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg--~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~ 70 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGP--LFQTPEEIARQAVEADVHVVGVSSLAGGHLTLV 70 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECC--CCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHH
Confidence 566665443331111111235577888999998764 45788888888877766 666655443444333
No 74
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=26.85 E-value=4.4e+02 Score=27.59 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=60.3
Q ss_pred EEEecCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHh--cCCeEEeechhhhhh----hhccCCCcEE
Q 008963 371 VILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALN--SSDVMVGVHGAAMTH----FLFMKPGSVF 442 (547)
Q Consensus 371 liIsR~~s--R~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~--~aDVlVGvHGAGLTN----~lFmppga~v 442 (547)
+|+.+... .--...+++.+.+++.|.++.+....+.-...+-++.+. .-|.+|..=|=|..| .|+-.+...
T Consensus 7 ~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~- 85 (301)
T COG1597 7 LIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP- 85 (301)
T ss_pred EEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc-
Confidence 44555443 444456688899999999888766533334555555543 789999999988655 566555554
Q ss_pred EEEecCCCCccccchHHHHHhhcCCe
Q 008963 443 IQVIPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 443 IEI~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
+=|+|.|+ ....|+.+|+.
T Consensus 86 LgilP~GT-------~NdfAr~Lgip 104 (301)
T COG1597 86 LGILPGGT-------ANDFARALGIP 104 (301)
T ss_pred eEEecCCc-------hHHHHHHcCCC
Confidence 89999994 33566666654
No 75
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=26.45 E-value=75 Score=33.92 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCEEEEEecC-CCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEe-----cCCCCccccchH
Q 008963 385 NSLVKMAEDIGFQVQVVRPD-RTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVI-----PLGTDWAAETYY 458 (547)
Q Consensus 385 ~Evv~~lk~~GfeV~v~e~~-~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~vIEI~-----P~g~~~~~~~~Y 458 (547)
.|++++|+..||+++++|.- ...+=. .+.-+..+-++|-++|+|=--... -+-++||- ...-.-.+..-+
T Consensus 133 ~~~i~~ldAaG~DvIIVETVGvGQsev-~I~~~aDt~~~v~~pg~GD~~Q~i---K~GimEiaDi~vINKaD~~~A~~a~ 208 (323)
T COG1703 133 REAIKLLDAAGYDVIIVETVGVGQSEV-DIANMADTFLVVMIPGAGDDLQGI---KAGIMEIADIIVINKADRKGAEKAA 208 (323)
T ss_pred HHHHHHHHhcCCCEEEEEecCCCcchh-HHhhhcceEEEEecCCCCcHHHHH---HhhhhhhhheeeEeccChhhHHHHH
Confidence 47899999999999999852 112211 233334444556666665322111 02334431 111011234456
Q ss_pred HHHHhhcCCeE
Q 008963 459 GEPARKLGLKY 469 (547)
Q Consensus 459 ~~lA~~~Gl~Y 469 (547)
.++..++.+.+
T Consensus 209 r~l~~al~~~~ 219 (323)
T COG1703 209 RELRSALDLLR 219 (323)
T ss_pred HHHHHHHHhhc
Confidence 66777777665
No 76
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.17 E-value=1.8e+02 Score=27.12 Aligned_cols=47 Identities=15% Similarity=0.035 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCe-EEeechhhhhhh
Q 008963 385 NSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDV-MVGVHGAAMTHF 433 (547)
Q Consensus 385 ~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDV-lVGvHGAGLTN~ 433 (547)
.-+..+|+..||+|+-+- .+.+.++.++...+.|+ +||+-.---+++
T Consensus 19 ~iv~~~l~~~GfeVi~LG--~~v~~e~~v~aa~~~~adiVglS~l~~~~~ 66 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLG--VLSPQEEFIKAAIETKADAILVSSLYGHGE 66 (134)
T ss_pred HHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCCEEEEecccccCH
Confidence 446678899999999764 46899999999988776 666644333333
No 77
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.85 E-value=1.9e+02 Score=30.49 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=47.4
Q ss_pred CEEEEEecCCCccccCHHHHHHHHHH----cCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechh-hhhhhhccCCCcEE
Q 008963 368 PKLVILSRNGSRAITNENSLVKMAED----IGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGA-AMTHFLFMKPGSVF 442 (547)
Q Consensus 368 prlliIsR~~sR~IlNe~Evv~~lk~----~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGA-GLTN~lFmppga~v 442 (547)
-++++|.|+.. + -.=+..+|.+ .|..|.+... .+. ...+.+++|||+|+.=|. ++--.=|.+||++|
T Consensus 158 k~vvViGrS~i---V-G~Pla~lL~~~~~~~~AtVt~~hs-~t~---~l~~~~~~ADIVI~AvG~p~li~~~~vk~GavV 229 (286)
T PRK14184 158 KKAVVVGRSNI---V-GKPLALMLGAPGKFANATVTVCHS-RTP---DLAEECREADFLFVAIGRPRFVTADMVKPGAVV 229 (286)
T ss_pred CEEEEECCCcc---c-hHHHHHHHhCCcccCCCEEEEEeC-Cch---hHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEE
Confidence 46889988763 1 1136666766 6778887753 222 234568999999988765 33333466999999
Q ss_pred EEEe
Q 008963 443 IQVI 446 (547)
Q Consensus 443 IEI~ 446 (547)
|-+=
T Consensus 230 IDVG 233 (286)
T PRK14184 230 VDVG 233 (286)
T ss_pred EEee
Confidence 9863
No 78
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=25.76 E-value=5.6e+02 Score=26.08 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=50.3
Q ss_pred EEEEEecC--CC-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH--hcCCeEEeechhhhhh----hhccCCC
Q 008963 369 KLVILSRN--GS-RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL--NSSDVMVGVHGAAMTH----FLFMKPG 439 (547)
Q Consensus 369 rlliIsR~--~s-R~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~--~~aDVlVGvHGAGLTN----~lFmppg 439 (547)
|+.+|-.. ++ +.-....++.+.+++.|+++.+..........++++.. ..+|++|.+=|=|--| .+.....
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~~~ 82 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQLDD 82 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhcCCC
Confidence 45555544 32 22223457888899999988776543322445555432 3578999988888655 4554344
Q ss_pred cEEEEEecCCC
Q 008963 440 SVFIQVIPLGT 450 (547)
Q Consensus 440 a~vIEI~P~g~ 450 (547)
...|=|+|.|.
T Consensus 83 ~~~lgiiP~Gt 93 (293)
T TIGR00147 83 IPALGILPLGT 93 (293)
T ss_pred CCcEEEEcCcC
Confidence 44678899984
No 79
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=25.44 E-value=2.8e+02 Score=28.64 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=48.8
Q ss_pred CCEEEEEecCC--Ccccc--CHHHHHHHHHHcCCEEEEE-ec-------------------CCCCCHHHHHHHHhcCCeE
Q 008963 367 KPKLVILSRNG--SRAIT--NENSLVKMAEDIGFQVQVV-RP-------------------DRTSELAKIYRALNSSDVM 422 (547)
Q Consensus 367 rprlliIsR~~--sR~Il--Ne~Evv~~lk~~GfeV~v~-e~-------------------~~~~s~~eQi~l~~~aDVl 422 (547)
++.++++.-.. .|++- +-.||++.+.+.|+.+++. .. ...+++.|-+.+++.||++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~ 257 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAV 257 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEE
Confidence 45554443322 36665 4457777776678877664 11 1247999999999999999
Q ss_pred EeechhhhhhhhccCCCcEEEEEecCC
Q 008963 423 VGVHGAAMTHFLFMKPGSVFIQVIPLG 449 (547)
Q Consensus 423 VGvHGAGLTN~lFmppga~vIEI~P~g 449 (547)
||.=. |.+|+--+= |+-+|-|+...
T Consensus 258 I~nDS-Gp~HlA~A~-g~p~valfGpt 282 (322)
T PRK10964 258 VSVDT-GLSHLTAAL-DRPNITLYGPT 282 (322)
T ss_pred EecCC-cHHHHHHHh-CCCEEEEECCC
Confidence 99743 333332221 45566666543
No 80
>PLN02928 oxidoreductase family protein
Probab=25.43 E-value=8.5e+02 Score=26.02 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCEEEEEecCCC---------------------CCHHHHHHHHhcCCeEEee--------chhhhhhhhcc
Q 008963 386 SLVKMAEDIGFQVQVVRPDRT---------------------SELAKIYRALNSSDVMVGV--------HGAAMTHFLFM 436 (547)
Q Consensus 386 Evv~~lk~~GfeV~v~e~~~~---------------------~s~~eQi~l~~~aDVlVGv--------HGAGLTN~lFm 436 (547)
++++.|+.+|++|...++... ....+.-+++.+|||++-. |=-+-..+--|
T Consensus 173 ~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~M 252 (347)
T PLN02928 173 ELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSM 252 (347)
T ss_pred HHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcC
Q ss_pred CCCcEEEEEecCCCCccccchHHHHHhhcCCeEEEEEecCCCCcccccCCCCCCccCCCCcc---cccCcceeeeeecCC
Q 008963 437 KPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSV---NEKGWQYTKTIYLDG 513 (547)
Q Consensus 437 ppga~vIEI~P~g~~~~~~~~Y~~lA~~~Gl~Y~~y~i~~eEssL~~~y~~dhpv~~dP~~i---~~kgW~~~~~~YL~~ 513 (547)
+||+++|-+---++ ..+.---..-+.=.+....-.+...|- .+.+||.+..|..+ |..|+..
T Consensus 253 k~ga~lINvaRG~l--Vde~AL~~AL~~g~i~gAaLDV~~~EP-----~~~~~pL~~~~nviiTPHia~~t~-------- 317 (347)
T PLN02928 253 KKGALLVNIARGGL--LDYDAVLAALESGHLGGLAIDVAWSEP-----FDPDDPILKHPNVIITPHVAGVTE-------- 317 (347)
T ss_pred CCCeEEEECCCccc--cCHHHHHHHHHcCCeeEEEEccCCCCC-----CCCCChhhcCCCEEECCcCCCChH--------
Q ss_pred ccEEEehHHHHHHHHHHHHHHHhhcccccc
Q 008963 514 QNVRLNLRRFQKRLVRAYDYSINRISQNCH 543 (547)
Q Consensus 514 QnV~lDi~rF~~~L~~A~~~l~~~~~~~~~ 543 (547)
+.+.++...+.+.+.++.....+
T Consensus 318 -------~~~~~~~~~~~~nl~~~~~g~~~ 340 (347)
T PLN02928 318 -------YSYRSMGKIVGDAALQLHAGRPL 340 (347)
T ss_pred -------HHHHHHHHHHHHHHHHHHCCCCC
No 81
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.15 E-value=2.1e+02 Score=30.21 Aligned_cols=70 Identities=21% Similarity=0.378 Sum_probs=48.9
Q ss_pred CEEEEEecCCCccccCHHHHHHHHHHc----CCEEEEEecCCCCCHHHHHHHHhcCCeEEeech-hhhhhhhccCCCcEE
Q 008963 368 PKLVILSRNGSRAITNENSLVKMAEDI----GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG-AAMTHFLFMKPGSVF 442 (547)
Q Consensus 368 prlliIsR~~sR~IlNe~Evv~~lk~~----GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG-AGLTN~lFmppga~v 442 (547)
-++++|.|+.. +-- =+..+|.+. +..|.+... .+.++. +..++|||+|..=| +++-..=|.+||++|
T Consensus 158 K~vvViGrS~i---VGk-Pla~lL~~~~~~~~aTVtvchs-~T~nl~---~~~~~ADIvIsAvGkp~~i~~~~vk~gavV 229 (293)
T PRK14185 158 KKCVVLGRSNI---VGK-PMAQLMMQKAYPGDCTVTVCHS-RSKNLK---KECLEADIIIAALGQPEFVKADMVKEGAVV 229 (293)
T ss_pred CEEEEECCCcc---chH-HHHHHHHcCCCCCCCEEEEecC-CCCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCEE
Confidence 47889998863 111 256666665 577887642 344554 45789999998776 567777788999999
Q ss_pred EEE
Q 008963 443 IQV 445 (547)
Q Consensus 443 IEI 445 (547)
|-+
T Consensus 230 IDv 232 (293)
T PRK14185 230 IDV 232 (293)
T ss_pred EEe
Confidence 986
No 82
>PRK13059 putative lipid kinase; Reviewed
Probab=24.88 E-value=5e+02 Score=26.77 Aligned_cols=68 Identities=16% Similarity=0.334 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH-hcCCeEEeechhhhhhhh---ccCCC-cEEEEEecCCC
Q 008963 383 NENSLVKMAEDIGFQVQVVRPDRTSELAKIYRAL-NSSDVMVGVHGAAMTHFL---FMKPG-SVFIQVIPLGT 450 (547)
Q Consensus 383 Ne~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~-~~aDVlVGvHGAGLTN~l---Fmppg-a~vIEI~P~g~ 450 (547)
..+++.+.+++.|+++.+...........-.+.. ..+|++|.+=|=|-.|.+ .+..+ .+-+=|+|.|+
T Consensus 20 ~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~GT 92 (295)
T PRK13059 20 ELDKVIRIHQEKGYLVVPYRISLEYDLKNAFKDIDESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVGT 92 (295)
T ss_pred HHHHHHHHHHHCCcEEEEEEccCcchHHHHHHHhhcCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECCCC
Confidence 3467888999999998765543222322222222 457999999998866644 13222 35588999984
No 83
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.82 E-value=1.1e+02 Score=28.15 Aligned_cols=53 Identities=26% Similarity=0.435 Sum_probs=37.6
Q ss_pred cccCHHHHHHHHHHcCCEEEEEe--cCCCCCHHHHHHHH-hcCCeEEeechhhhhh
Q 008963 380 AITNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYRAL-NSSDVMVGVHGAAMTH 432 (547)
Q Consensus 380 ~IlNe~Evv~~lk~~GfeV~v~e--~~~~~s~~eQi~l~-~~aDVlVGvHGAGLTN 432 (547)
+=.|..-+.+.|++.|+++.... +++...+.++++.. .++|++|..=|+|.+.
T Consensus 25 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g~ 80 (144)
T TIGR00177 25 YDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVGP 80 (144)
T ss_pred EeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCCC
Confidence 34566678899999999987654 23334566666544 6899999998877654
No 84
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=24.46 E-value=2e+02 Score=27.80 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=45.2
Q ss_pred EEEecCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEecC
Q 008963 371 VILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPL 448 (547)
Q Consensus 371 liIsR~~s--R~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~vIEI~P~ 448 (547)
.+++|.|. +-.-+..++++.|++.|..+.+.+-...-..+.| ++.--++- .+-.....|...-.-+||.|-
T Consensus 35 ~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~--~L~~l~i~-----~~~~~~~~~~~~F~~~eI~~g 107 (169)
T PF12689_consen 35 VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARE--LLKLLEID-----DADGDGVPLIEYFDYLEIYPG 107 (169)
T ss_dssp -EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHH--HHHHTT-C---------------CCECEEEESSS
T ss_pred EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHH--HHHhcCCC-----ccccccccchhhcchhheecC
Confidence 67889887 8888999999999999999998872111122222 22222222 222444555565556899986
Q ss_pred CCCccccchHHHHHhhcCCeEE
Q 008963 449 GTDWAAETYYGEPARKLGLKYI 470 (547)
Q Consensus 449 g~~~~~~~~Y~~lA~~~Gl~Y~ 470 (547)
. -..+|.++.+..|+.|-
T Consensus 108 s----K~~Hf~~i~~~tgI~y~ 125 (169)
T PF12689_consen 108 S----KTTHFRRIHRKTGIPYE 125 (169)
T ss_dssp -----HHHHHHHHHHHH---GG
T ss_pred c----hHHHHHHHHHhcCCChh
Confidence 4 46789999999999994
No 85
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=24.42 E-value=1.6e+02 Score=29.02 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=42.6
Q ss_pred CCCCEEEEEecCCCccccCHHHHHHHHHHc-CCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhh
Q 008963 365 SKKPKLVILSRNGSRAITNENSLVKMAEDI-GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAM 430 (547)
Q Consensus 365 ~~rprlliIsR~~sR~IlNe~Evv~~lk~~-GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGL 430 (547)
+.++|++||.-...-.=.-...+.++++++ |++++.+... +-.+..+.+.+||+++=.=|.-.
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~---~~~~~~~~l~~ad~I~l~GG~~~ 92 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLF---DTEDPLDALLEADVIYVGGGNTF 92 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEecc---CcccHHHHHhcCCEEEECCchHH
Confidence 467899999877651112234577888889 9999887632 23444788899999886655433
No 86
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=23.53 E-value=1.4e+02 Score=28.53 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=53.0
Q ss_pred CCEEEEEecCCCccccCHHHHH-HHHHHcCCEEEE-EecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCC-CcEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLV-KMAEDIGFQVQV-VRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKP-GSVFI 443 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv-~~lk~~GfeV~v-~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmpp-ga~vI 443 (547)
.|.+++..|+- +.+.+..+++ +.++++--.+++ .++...++-++-.+.+.+ |-+-+||++|+.|=+. |-++|
T Consensus 8 GPelviYtk~P-~~~~~~~dli~~lAk~lrKRIvvR~dps~l~~~e~A~~~I~~----ivP~ea~i~di~Fd~~tGEV~I 82 (145)
T cd02410 8 GPELVVYTKNP-ELFAEDGDLVKDLAKDLRKRIVIRPDPSVLKPPEEAIKIILE----IVPEEAGITDIYFDDDTGEVII 82 (145)
T ss_pred CCeEEEEECCH-HHHhcccHHHHHHHHHHhceEEEcCChhhcCCHHHHHHHHHH----hCCCccCceeeEecCCCcEEEE
Confidence 58899988875 5665556666 455556656554 233233555665555554 4567899999999996 99999
Q ss_pred EEecCC
Q 008963 444 QVIPLG 449 (547)
Q Consensus 444 EI~P~g 449 (547)
|.--+|
T Consensus 83 eaeKPG 88 (145)
T cd02410 83 EAEKPG 88 (145)
T ss_pred EEcCCe
Confidence 998555
No 87
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=23.21 E-value=56 Score=32.70 Aligned_cols=59 Identities=20% Similarity=0.370 Sum_probs=43.3
Q ss_pred CHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEecCCCCccccchHHH--HHhhcCCeEEEEE
Q 008963 408 ELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGE--PARKLGLKYIGYT 473 (547)
Q Consensus 408 s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~vIEI~P~g~~~~~~~~Y~~--lA~~~Gl~Y~~y~ 473 (547)
.+++.++.-.++||+|++-=-|=||++|.++-+ +++- +..-.++.. .|+.+|+.+..|.
T Consensus 103 ~i~~~~~~~~d~dvviaP~~gGGTn~L~~r~~~--~~~~-----y~g~SF~~Hl~~Ark~G~~~~~~d 163 (210)
T COG1920 103 HIERALSAAKDADVVIAPGRGGGTNVLFARKSA--FRPR-----YGGVSFLRHLEEARKRGLVVLTYD 163 (210)
T ss_pred HHHHHHHhcCCCcEEEecCCCCceEEEEEeccc--cccc-----ccCccHHHHHHHHHHcCCEEEEec
Confidence 467778888899999999999999999999833 2221 122334444 6889999997764
No 88
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=23.13 E-value=1.5e+02 Score=33.21 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=45.7
Q ss_pred CCCCEEEEEecCCC------c--cccCHHH--------HHHHHHHc-CCEEEEEec-CCCCCHHHHHHHHh--cCCeEEe
Q 008963 365 SKKPKLVILSRNGS------R--AITNENS--------LVKMAEDI-GFQVQVVRP-DRTSELAKIYRALN--SSDVMVG 424 (547)
Q Consensus 365 ~~rprlliIsR~~s------R--~IlNe~E--------vv~~lk~~-GfeV~v~e~-~~~~s~~eQi~l~~--~aDVlVG 424 (547)
..++.+++|+=.+. . .=+-|.+ |.+.|++. |++|+.... +...++.|-+++.+ +||++|+
T Consensus 188 ~~~~~vIvIDpGHGG~DpGA~g~~G~~EKdv~L~iA~~L~~~L~~~~g~~VvlTR~~D~~v~L~eR~~iAn~~~ADLFIS 267 (445)
T PRK10431 188 TGDKVIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVS 267 (445)
T ss_pred CCCCeEEEEeCCCCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 34666677776431 1 2244554 33444454 799887653 35689999999997 8999999
Q ss_pred echhhhhh
Q 008963 425 VHGAAMTH 432 (547)
Q Consensus 425 vHGAGLTN 432 (547)
+|--+..+
T Consensus 268 IHaNa~~~ 275 (445)
T PRK10431 268 IHADAAPN 275 (445)
T ss_pred EccCCCCC
Confidence 99887765
No 89
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=22.96 E-value=1.1e+02 Score=33.95 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=64.9
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeec---hhhhhhhhccCCCcEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH---GAAMTHFLFMKPGSVFI 443 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvH---GAGLTN~lFmppga~vI 443 (547)
+..|-||. ..-.--|.+|+.+.|++.|++|+..-+ ...+++| ++.+.+|+.-|.+. |..++..|=-+=|.-.+
T Consensus 199 ~~~VNiiG--~~~~~gd~~el~~lL~~~Gl~v~~~~~-g~~s~~e-i~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~ 274 (457)
T TIGR01284 199 EYDVNLIG--EYNIQGDLWVLKKYFERMGIQVLSTFT-GNGCYDE-LRWMHRAKLNVVRCARSANYIANELEERYGIPRL 274 (457)
T ss_pred CCeEEEEc--cCCchhhHHHHHHHHHHcCCeEEEEEC-CCCCHHH-HHhccccCEEEEEChHHHHHHHHHHHHHhCCCeE
Confidence 34566664 222234667899999999999975433 3566655 56677777755443 33455555444577788
Q ss_pred EEecCCCCccccchHHHHHhhcCCe
Q 008963 444 QVIPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 444 EI~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
.+-|+|++. ...+++.+|+..|+.
T Consensus 275 ~~~~~G~~~-T~~~l~~ia~~~g~~ 298 (457)
T TIGR01284 275 DIDFFGFEY-CAKNLRKIGEFFGIE 298 (457)
T ss_pred ecccCCHHH-HHHHHHHHHHHhCCc
Confidence 887888643 457899999999965
No 90
>PRK03094 hypothetical protein; Provisional
Probab=22.77 E-value=1.1e+02 Score=26.34 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHcCCEEEEEe
Q 008963 383 NENSLVKMAEDIGFQVQVVR 402 (547)
Q Consensus 383 Ne~Evv~~lk~~GfeV~v~e 402 (547)
++..|.++|++.||+|+-++
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred CcHHHHHHHHHCCCEEEecC
Confidence 56679999999999999775
No 91
>PRK13057 putative lipid kinase; Reviewed
Probab=22.46 E-value=4.3e+02 Score=27.01 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH-HhcCCeEEeechhhhhhhh---ccCCCcEEEEEecCCC
Q 008963 383 NENSLVKMAEDIGFQVQVVRPDRTSELAKIYRA-LNSSDVMVGVHGAAMTHFL---FMKPGSVFIQVIPLGT 450 (547)
Q Consensus 383 Ne~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l-~~~aDVlVGvHGAGLTN~l---Fmppga~vIEI~P~g~ 450 (547)
..+++.+.+++.|+++.+..........+.++. ....|++|.+=|=|--|.+ .+.. ..-+=++|.|+
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGTv~~v~~~l~~~-~~~lgiiP~GT 84 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGTLNAAAPALVET-GLPLGILPLGT 84 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchHHHHHHHHHHhcC-CCcEEEECCCC
Confidence 467899999999999877654323334444433 4567999999998865544 2333 34578899984
No 92
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=22.32 E-value=1e+02 Score=29.72 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=45.6
Q ss_pred HHHHHHHHc-CCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCC-cEEEEEecCC-CCccccchHHHHH
Q 008963 386 SLVKMAEDI-GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPG-SVFIQVIPLG-TDWAAETYYGEPA 462 (547)
Q Consensus 386 Evv~~lk~~-GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppg-a~vIEI~P~g-~~~~~~~~Y~~lA 462 (547)
++.+.+++. .-+.++..-...+++.+..+.+..-+=+||+| .|.||. .-+|||+|.. +.-..-..-..++
T Consensus 95 ~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~H-------f~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~ 167 (180)
T PF02737_consen 95 ELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMH-------FFNPPHLMPLVEVVPGPKTSPETVDRVRALL 167 (180)
T ss_dssp HHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEE-------E-SSTTT--EEEEEE-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEe-------cccccccCceEEEeCCCCCCHHHHHHHHHHH
Confidence 567777765 45566555446789999998888888899999 355775 7999999986 2211222344555
Q ss_pred hhcCCe
Q 008963 463 RKLGLK 468 (547)
Q Consensus 463 ~~~Gl~ 468 (547)
+.+|..
T Consensus 168 ~~~gk~ 173 (180)
T PF02737_consen 168 RSLGKT 173 (180)
T ss_dssp HHTT-E
T ss_pred HHCCCE
Confidence 566644
No 93
>PRK13055 putative lipid kinase; Reviewed
Probab=22.14 E-value=5.7e+02 Score=26.93 Aligned_cols=69 Identities=13% Similarity=0.265 Sum_probs=43.9
Q ss_pred cCHHHHHHHHHHcCCEEEEEecC-CCCCHHHHHHHH--hcCCeEEeechhhhhhhhc---cC-CCcEEEEEecCCC
Q 008963 382 TNENSLVKMAEDIGFQVQVVRPD-RTSELAKIYRAL--NSSDVMVGVHGAAMTHFLF---MK-PGSVFIQVIPLGT 450 (547)
Q Consensus 382 lNe~Evv~~lk~~GfeV~v~e~~-~~~s~~eQi~l~--~~aDVlVGvHGAGLTN~lF---mp-pga~vIEI~P~g~ 450 (547)
...+++.+.+++.|+++.+.... ......+.++.. ...|+||.+=|=|-.|-+- +. .....+=|+|.|+
T Consensus 20 ~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~GT 95 (334)
T PRK13055 20 KNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPAGT 95 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECCCc
Confidence 34577889999999887664332 223444444433 4679999998888655332 22 2235688999984
No 94
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.08 E-value=2.2e+02 Score=29.67 Aligned_cols=68 Identities=21% Similarity=0.376 Sum_probs=47.1
Q ss_pred EEEEEecCCC--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechh-hhhhhhccCCCcEEEEE
Q 008963 369 KLVILSRNGS--RAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGA-AMTHFLFMKPGSVFIQV 445 (547)
Q Consensus 369 rlliIsR~~s--R~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGA-GLTN~lFmppga~vIEI 445 (547)
++++|.|.+. |- +..+|.+.|..|.+... ...++ .+.+.+||++|..-|- ++--.=+++||++||.+
T Consensus 161 ~vvViG~gg~vGkp------ia~~L~~~gatVtv~~~-~t~~L---~~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDv 230 (283)
T PRK14192 161 HAVVVGRSAILGKP------MAMMLLNANATVTICHS-RTQNL---PELVKQADIIVGAVGKPELIKKDWIKQGAVVVDA 230 (283)
T ss_pred EEEEECCcHHHHHH------HHHHHHhCCCEEEEEeC-CchhH---HHHhccCCEEEEccCCCCcCCHHHcCCCCEEEEE
Confidence 6899999872 54 56777788888888763 23334 3456899999998862 22222346789999887
Q ss_pred e
Q 008963 446 I 446 (547)
Q Consensus 446 ~ 446 (547)
.
T Consensus 231 g 231 (283)
T PRK14192 231 G 231 (283)
T ss_pred E
Confidence 5
No 95
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=21.82 E-value=1.5e+02 Score=26.86 Aligned_cols=51 Identities=22% Similarity=0.422 Sum_probs=34.9
Q ss_pred cCHHHHHHHHHHcCCEEEEEe--cCCCCCHHHHHH-HHhcCCeEEeechhhhhh
Q 008963 382 TNENSLVKMAEDIGFQVQVVR--PDRTSELAKIYR-ALNSSDVMVGVHGAAMTH 432 (547)
Q Consensus 382 lNe~Evv~~lk~~GfeV~v~e--~~~~~s~~eQi~-l~~~aDVlVGvHGAGLTN 432 (547)
.|-.-+.+.+++.|+++.... ++....+.+.++ +..++|++|..=|+|.+.
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g~ 71 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPGP 71 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCCC
Confidence 455678899999999875432 333344556654 346799999998888554
No 96
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=21.42 E-value=3.3e+02 Score=27.92 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=39.6
Q ss_pred HHHhcCCeEEeechhhhhh--------hhccCCCcEEEEEecCCCCccccchHHHHHhhcCCeE
Q 008963 414 RALNSSDVMVGVHGAAMTH--------FLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKY 469 (547)
Q Consensus 414 ~l~~~aDVlVGvHGAGLTN--------~lFmppga~vIEI~P~g~~~~~~~~Y~~lA~~~Gl~Y 469 (547)
..+..+|++|..-.+|+-. .-++++++.|++++-.. ..+.+-..|+..|++.
T Consensus 181 ~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P----~~T~ll~~A~~~G~~~ 240 (278)
T PRK00258 181 EELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP----LPTPFLAWAKAQGART 240 (278)
T ss_pred hccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC----CCCHHHHHHHHCcCee
Confidence 4567899999999999843 13468889999997432 3466888999999876
No 97
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=21.34 E-value=1.9e+02 Score=26.24 Aligned_cols=54 Identities=22% Similarity=0.461 Sum_probs=34.4
Q ss_pred EEEEEecCCCccccCHHHHHHHH----HHcCCEEEEEecCCC----------------CCHHHHHHHHhcCCeEE
Q 008963 369 KLVILSRNGSRAITNENSLVKMA----EDIGFQVQVVRPDRT----------------SELAKIYRALNSSDVMV 423 (547)
Q Consensus 369 rlliIsR~~sR~IlNe~Evv~~l----k~~GfeV~v~e~~~~----------------~s~~eQi~l~~~aDVlV 423 (547)
|+++|.=+ .|.--|-..+++.+ ++.|.++.+++..+. -.+.+-++.+.+||.+|
T Consensus 2 kilii~gS-~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI 75 (152)
T PF03358_consen 2 KILIINGS-PRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGII 75 (152)
T ss_dssp EEEEEESS-SSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEE
T ss_pred EEEEEECc-CCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEE
Confidence 56666422 25555555555444 445999999886431 24566688999999877
No 98
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=21.27 E-value=2e+02 Score=31.54 Aligned_cols=94 Identities=18% Similarity=0.302 Sum_probs=59.3
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeec--hhhhhhhhccCCCcEEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVH--GAAMTHFLFMKPGSVFIQ 444 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvH--GAGLTN~lFmppga~vIE 444 (547)
+.++.++.--. .-+..|+.+.|++.|.++..+=+. .++.| +..+..+..++..+ +..++..| -+-|.-.+.
T Consensus 166 ~~~VniiG~~~---~~d~~el~~lL~~~Gi~v~~~lp~--~~~~d-~~~~~~~~~~~~~~~~~~~~A~~L-~~~GiP~~~ 238 (427)
T PRK02842 166 HPSLVLVGSLA---DVVEDQLTLEFKKLGIGVVGFLPA--RRFTE-LPAIGPGTVVALAQPFLSDTARAL-RERGAKVLT 238 (427)
T ss_pred CCcEEEEEeCC---cchHHHHHHHHHHcCCeeEEEeCC--ccHHH-HhhcCcCcEEEEeCHHHHHHHHHH-HHcCCcccc
Confidence 34556665332 455689999999999998733343 44544 45554444544444 43455555 555666665
Q ss_pred E-ecCCCCccccchHHHHHhhcCCe
Q 008963 445 V-IPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 445 I-~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
. +|+|++- ...+++.+|+..|+.
T Consensus 239 ~~~P~G~~~-T~~~L~~la~~~g~~ 262 (427)
T PRK02842 239 APFPLGPEG-TRAWLEAAAAAFGID 262 (427)
T ss_pred CCCCcChHH-HHHHHHHHHHHhCcC
Confidence 5 7888642 467899999998864
No 99
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.85 E-value=1.3e+02 Score=32.96 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=63.0
Q ss_pred CCCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEec----------------CCCCCHHHHHHHHhcCCeEEeech-h
Q 008963 366 KKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRP----------------DRTSELAKIYRALNSSDVMVGVHG-A 428 (547)
Q Consensus 366 ~rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~----------------~~~~s~~eQi~l~~~aDVlVGvHG-A 428 (547)
.+++|-+|.-..+. --|.+|+.+.|++.|.+++.+-. ....+++ +++-+.+|.+-|-++. .
T Consensus 159 ~~~~VNli~~~~~~-~d~~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~-~i~~~~~A~~niv~~~~~ 236 (435)
T cd01974 159 KNGKLNIIPGFDTY-AGNMREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLE-ELKDAGNAKATLALQEYA 236 (435)
T ss_pred CCCeEEEECCCCCC-cchHHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHH-HHHhhccCcEEEEECccc
Confidence 34566666422222 12789999999999999976420 0134554 5677777777666553 2
Q ss_pred hhhhhhccC--CCcEEEEE-ecCCCCccccchHHHHHhhcCCe
Q 008963 429 AMTHFLFMK--PGSVFIQV-IPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 429 GLTN~lFmp--pga~vIEI-~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
|..-.-+|. =|.-.+.. .|+|++ ....|++.+|+..|..
T Consensus 237 ~~~~a~~Le~~~giP~~~~~~p~G~~-~t~~~l~~l~~~~g~~ 278 (435)
T cd01974 237 TEKTAKFLEKKCKVPVETLNMPIGVA-ATDEFLMALSELTGKP 278 (435)
T ss_pred cHHHHHHHHHHhCCCeeecCCCcChH-HHHHHHHHHHHHhCCC
Confidence 332233433 45656777 599964 2467899999999875
No 100
>COG0860 AmiC N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]
Probab=20.85 E-value=2.2e+02 Score=28.89 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCEEEEEecC-CCCCHHHHHHHHh--cCCeEEeechhhhhh
Q 008963 386 SLVKMAEDIGFQVQVVRPD-RTSELAKIYRALN--SSDVMVGVHGAAMTH 432 (547)
Q Consensus 386 Evv~~lk~~GfeV~v~e~~-~~~s~~eQi~l~~--~aDVlVGvHGAGLTN 432 (547)
.+.+.|++.|++|+..... ...++.+-.++.+ .||++|.+|--+..+
T Consensus 76 ~l~~~L~~~g~~v~mTR~~D~~~~l~~R~~~A~~~~adlfiSIH~na~~~ 125 (231)
T COG0860 76 RLRDLLRAEGVEVVLTRTSDTFVSLNERVAIANASGADLFVSIHANAAPS 125 (231)
T ss_pred HHHHHHHhCCCEEEEecCCCCcCCHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence 4667777789998876642 2356766666654 589999999776654
No 101
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.78 E-value=2.3e+02 Score=24.27 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHcCCEEEEE--ecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEecCCCCccccchHHH
Q 008963 383 NENSLVKMAEDIGFQVQVV--RPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGE 460 (547)
Q Consensus 383 Ne~Evv~~lk~~GfeV~v~--e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~vIEI~P~g~~~~~~~~Y~~ 460 (547)
++.++.+.+++.|++.+.. +......-...-+.+.+||++|=+-+. ..+.....-..
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~---------------------vsH~~~~~vk~ 69 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDY---------------------VSHNAMWKVKK 69 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCC---------------------cChHHHHHHHH
Confidence 4667888899999998887 211112222244578999998754221 12223344577
Q ss_pred HHhhcCCeEE
Q 008963 461 PARKLGLKYI 470 (547)
Q Consensus 461 lA~~~Gl~Y~ 470 (547)
.|+..|+.++
T Consensus 70 ~akk~~ip~~ 79 (97)
T PF10087_consen 70 AAKKYGIPII 79 (97)
T ss_pred HHHHcCCcEE
Confidence 7888888774
No 102
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=20.77 E-value=1.9e+02 Score=26.87 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeech
Q 008963 385 NSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHG 427 (547)
Q Consensus 385 ~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHG 427 (547)
+++.++++++|++|..++. ...+-.+..+.+.+||+|.=-=|
T Consensus 3 ~~~~~~f~~~g~~v~~l~~-~~~~~~~~~~~i~~ad~I~~~GG 44 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDL-SDRNDADILEAIREADAIFLGGG 44 (154)
T ss_dssp HHHHHHHHHCT-EEEECCC-TSCGHHHHHHHHHHSSEEEE--S
T ss_pred HHHHHHHHHCCCEEEEEec-cCCChHHHHHHHHhCCEEEECCC
Confidence 4567788888888777764 23456677788888888765444
No 103
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=20.11 E-value=2.1e+02 Score=31.59 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=64.5
Q ss_pred CCEEEEEecCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechh-h--hhhhhccCCCcEEE
Q 008963 367 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGA-A--MTHFLFMKPGSVFI 443 (547)
Q Consensus 367 rprlliIsR~~sR~IlNe~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aDVlVGvHGA-G--LTN~lFmppga~vI 443 (547)
+.+|-||.= ....-|.+|+.+.|++.|++++..-+ ...+++ +++-+.+|..-|.+.+. | ++..|==+=|.-.+
T Consensus 191 ~~~VNiig~--~~~~~d~~el~~lL~~~Gl~v~~~~~-~~~t~e-ei~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~ 266 (443)
T TIGR01862 191 EYDVNIIGE--YNIGGDAWVMRIYLEEMGIQVVATFT-GDGTYD-EIRLMHKAKLNLVHCARSANYIANELEERYGIPWM 266 (443)
T ss_pred CCeEEEEcc--CcCcccHHHHHHHHHHcCCeEEEEEC-CCCCHH-HHHhcccCCEEEEEChHHHHHHHHHHHHHhCCCeE
Confidence 455666652 23356888999999999999986433 345665 46678888877665542 3 34444323467677
Q ss_pred EEecCCCCccccchHHHHHhhcCCe
Q 008963 444 QVIPLGTDWAAETYYGEPARKLGLK 468 (547)
Q Consensus 444 EI~P~g~~~~~~~~Y~~lA~~~Gl~ 468 (547)
.+.|+|++- ...++..+|+..|+.
T Consensus 267 ~~~p~G~~~-t~~~l~~la~~~gi~ 290 (443)
T TIGR01862 267 KIDFFGFTY-TAESLRAIAAFFGIE 290 (443)
T ss_pred ecccCCHHH-HHHHHHHHHHHhCCc
Confidence 777888642 457899999998853
No 104
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=20.10 E-value=17 Score=31.34 Aligned_cols=7 Identities=0% Similarity=-0.073 Sum_probs=0.0
Q ss_pred CCCcccc
Q 008963 60 SSSTTSR 66 (547)
Q Consensus 60 ~~~~~~~ 66 (547)
.++|++|
T Consensus 61 ~rkKrrw 67 (81)
T PF14812_consen 61 PRKKRRW 67 (81)
T ss_dssp -------
T ss_pred ccccchh
Confidence 3344444
No 105
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=20.09 E-value=1.4e+02 Score=32.81 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCC--eEEeechhhhhhhhccCCCcEEEEEecCCCCccccchHHH
Q 008963 383 NENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSD--VMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGE 460 (547)
Q Consensus 383 Ne~Evv~~lk~~GfeV~v~e~~~~~s~~eQi~l~~~aD--VlVGvHGAGLTN~lFmppga~vIEI~P~g~~~~~~~~Y~~ 460 (547)
|..|+.+.|++.|.++.++-+ ..+++| ++-+.+|. ++++.+. +.+-.++..-|.-.++..|.|++- ...|.+.
T Consensus 178 d~~eik~lL~~~Gi~~~~~~~--G~~~~e-i~~a~~A~~~i~l~~~~-~~a~~l~~~~GvP~~~~~PiG~~~-Td~fL~~ 252 (422)
T TIGR02015 178 DAMVIGGVLQPIGVESGPTVP--GRDWRE-LYAALDSSAVAVLHPFY-EATARLFEAAGVKIVGSAPVGANG-TGEWLER 252 (422)
T ss_pred cHHHHHHHHHHcCCCeEEecC--CCCHHH-HHhhhcCeEEEEeCccc-hHHHHHHHHcCCceeccCCCChHH-HHHHHHH
Confidence 678899999999999977654 346655 45555554 4555443 456677777777678888999653 4678999
Q ss_pred HHhhcCCe
Q 008963 461 PARKLGLK 468 (547)
Q Consensus 461 lA~~~Gl~ 468 (547)
+|+..|..
T Consensus 253 la~~~G~~ 260 (422)
T TIGR02015 253 IGEALDLD 260 (422)
T ss_pred HHHHhCcC
Confidence 99999965
No 106
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.09 E-value=4e+02 Score=27.50 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=50.0
Q ss_pred CCCEEEEE--ecC-CCcccc--CHHHHHHHHHHcCCEEEEEec---------------------CCCCCHHHHHHHHhcC
Q 008963 366 KKPKLVIL--SRN-GSRAIT--NENSLVKMAEDIGFQVQVVRP---------------------DRTSELAKIYRALNSS 419 (547)
Q Consensus 366 ~rprlliI--sR~-~sR~Il--Ne~Evv~~lk~~GfeV~v~e~---------------------~~~~s~~eQi~l~~~a 419 (547)
.+|.+++- ++. ..|++- +-.||++.+.+.|+.++++.. ...+++.|-+.+++.|
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a 252 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALA 252 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhC
Confidence 35555543 332 246665 556777777666766665421 1245899999999999
Q ss_pred CeEEeechhhhhhhhccCCCcEEEEEecCC
Q 008963 420 DVMVGVHGAAMTHFLFMKPGSVFIQVIPLG 449 (547)
Q Consensus 420 DVlVGvHGAGLTN~lFmppga~vIEI~P~g 449 (547)
|++||.=. |..|+--+- |.-+|-|+...
T Consensus 253 ~l~I~~DS-Gp~HlAaA~-~~P~i~lfG~t 280 (334)
T TIGR02195 253 KAVVTNDS-GLMHVAAAL-NRPLVALYGST 280 (334)
T ss_pred CEEEeeCC-HHHHHHHHc-CCCEEEEECCC
Confidence 99999854 444444332 44566666543
Done!