BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008964
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
An Sa-Induced And Partially Npr1-Dependent Transcription
Factor
Length = 76
Score = 88.6 bits (218), Expect = 9e-18, Method: Composition-based stats.
Identities = 36/63 (57%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 291 MISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNH 350
+++DG +WRKYGQK KG+P PR+YYRC+ + GCPV+K V+R S D +L+TTYEG H+H
Sbjct: 13 IVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTKLLITTYEGKHDH 71
Query: 351 PLP 353
+P
Sbjct: 72 DMP 74
>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
Atwrky4
pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
W-Box Dna
Length = 78
Score = 87.8 bits (216), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/66 (57%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 288 EASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGN 347
E ++ DG +WRKYGQK+ KGNP PR+YY+CT GC VRK V+R + D ++TTYEG
Sbjct: 13 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATDPKAVVTTYEGK 71
Query: 348 HNHPLP 353
HNH LP
Sbjct: 72 HNHDLP 77
>pdb|3AXJ|A Chain A, High Resolution Crystal Structure Of C3po
Length = 249
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 83 NERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQL 142
NE+ + I R IEH + +IKL ++ +DL+++S R Q+
Sbjct: 33 NEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARK------------QV 80
Query: 143 HLCA-----LTQLEPTGK 155
LCA L +L P G+
Sbjct: 81 ELCAQKYQKLAELVPAGQ 98
>pdb|4DG7|A Chain A, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|B Chain B, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|C Chain C, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|D Chain D, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|E Chain E, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|F Chain F, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|G Chain G, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|H Chain H, Low Resolution Structure Of Drosophila Translin
Length = 255
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 83 NERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQL 142
NE+ + I R IEH + +IKL ++ +DL+++S R Q+
Sbjct: 39 NEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARK------------QV 86
Query: 143 HLCA-----LTQLEPTGK 155
LCA L +L P G+
Sbjct: 87 ELCAQKYQKLAELVPAGQ 104
>pdb|2QVA|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|B Chain B, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|C Chain C, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|D Chain D, Crystal Structure Of Drosophila Melanogaster Translin
Protein
Length = 247
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 83 NERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQL 142
NE+ + I R IEH + +IKL ++ +DL+++S R Q+
Sbjct: 31 NEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARK------------QV 78
Query: 143 HLCA-----LTQLEPTGK 155
LCA L +L P G+
Sbjct: 79 ELCAQKYQKLAELVPAGQ 96
>pdb|2QRX|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin
Protein
Length = 235
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 83 NERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQL 142
NE+ + I R IEH + +IKL ++ +DL+++S R Q+
Sbjct: 19 NEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARK------------QV 66
Query: 143 HLCA-----LTQLEPTGK 155
LCA L +L P G+
Sbjct: 67 ELCAQKYQKLAELVPAGQ 84
>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
pdb|3RIU|B Chain B, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 218
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 83 NERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQL 142
NE+ + I R IEH + +IKL ++ +DL+++S R Q+
Sbjct: 20 NEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARK------------QV 67
Query: 143 HLCA-----LTQLEPTGK 155
LCA L +L P G+
Sbjct: 68 ELCAQKYQKLAELVPAGQ 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,017,388
Number of Sequences: 62578
Number of extensions: 449853
Number of successful extensions: 658
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 11
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)