Query 008964
Match_columns 547
No_of_seqs 266 out of 764
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 18:44:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00774 WRKY DNA binding do 100.0 1.9E-30 4.1E-35 207.9 5.0 59 292-350 1-59 (59)
2 PF03106 WRKY: WRKY DNA -bindi 100.0 8E-31 1.7E-35 210.5 2.7 59 292-351 1-59 (60)
3 PF03101 FAR1: FAR1 DNA-bindin 94.2 0.042 9.2E-07 46.1 3.0 32 322-354 60-91 (91)
4 PF04500 FLYWCH: FLYWCH zinc f 90.9 0.12 2.6E-06 39.8 1.3 49 292-350 12-62 (62)
5 PF00170 bZIP_1: bZIP transcri 85.0 4 8.7E-05 32.9 6.7 41 104-144 23-63 (64)
6 TIGR02894 DNA_bind_RsfA transc 82.1 2.3 5E-05 41.3 4.9 39 105-143 109-147 (161)
7 COG4026 Uncharacterized protei 81.6 3.2 7E-05 42.5 5.9 40 108-147 164-203 (290)
8 PRK11677 hypothetical protein; 78.6 6.6 0.00014 37.0 6.6 42 105-146 34-79 (134)
9 PF06295 DUF1043: Protein of u 76.1 8.7 0.00019 35.5 6.6 42 105-146 30-75 (128)
10 TIGR00219 mreC rod shape-deter 75.2 2.5 5.3E-05 43.8 3.1 26 111-136 63-88 (283)
11 KOG4196 bZIP transcription fac 74.0 8 0.00017 36.6 5.7 37 109-145 83-119 (135)
12 KOG0646 WD40 repeat protein [G 73.9 8.5 0.00018 42.8 6.8 45 107-151 428-472 (476)
13 PF06005 DUF904: Protein of un 73.6 17 0.00038 30.8 7.2 44 107-150 18-68 (72)
14 PF05377 FlaC_arch: Flagella a 72.6 18 0.0004 29.5 6.8 45 105-150 5-49 (55)
15 smart00338 BRLZ basic region l 69.0 19 0.00041 29.0 6.3 40 105-144 24-63 (65)
16 COG1792 MreC Cell shape-determ 68.8 4.4 9.4E-05 42.2 3.2 24 108-131 84-107 (284)
17 PF08650 DASH_Dad4: DASH compl 68.0 7.3 0.00016 33.4 3.8 38 107-145 25-63 (72)
18 PRK00888 ftsB cell division pr 67.8 12 0.00026 33.6 5.4 33 105-137 32-64 (105)
19 PF06156 DUF972: Protein of un 67.6 12 0.00027 33.9 5.4 21 107-127 22-42 (107)
20 PF04977 DivIC: Septum formati 65.7 13 0.00029 30.1 4.9 37 105-141 22-58 (80)
21 PRK13922 rod shape-determining 65.2 6.7 0.00015 39.8 3.7 23 109-131 71-93 (276)
22 PF07795 DUF1635: Protein of u 64.1 22 0.00048 36.1 6.9 44 105-148 13-60 (214)
23 KOG4571 Activating transcripti 63.0 21 0.00045 37.8 6.7 44 105-148 246-289 (294)
24 PRK13169 DNA replication intia 59.6 19 0.0004 33.1 5.0 24 107-130 22-45 (110)
25 PF04201 TPD52: Tumour protein 59.2 33 0.00071 33.6 6.9 46 106-151 28-77 (162)
26 PRK13923 putative spore coat p 59.1 20 0.00043 35.3 5.5 39 106-144 110-148 (170)
27 PF07412 Geminin: Geminin; In 58.2 9.1 0.0002 38.5 3.0 25 109-133 134-158 (200)
28 PHA03155 hypothetical protein; 57.0 12 0.00026 34.7 3.4 25 106-130 7-31 (115)
29 PF15066 CAGE1: Cancer-associa 56.8 23 0.0005 39.8 6.0 45 108-152 398-442 (527)
30 PF07716 bZIP_2: Basic region 56.4 29 0.00062 27.3 5.0 30 105-134 23-52 (54)
31 PF14645 Chibby: Chibby family 56.3 26 0.00056 32.2 5.4 38 107-144 78-115 (116)
32 TIGR03752 conj_TIGR03752 integ 55.3 32 0.0007 38.7 6.9 24 107-130 73-96 (472)
33 PF14775 NYD-SP28_assoc: Sperm 55.2 19 0.00041 29.6 3.9 25 108-132 34-58 (60)
34 PF07875 Coat_F: Coat F domain 55.1 19 0.00042 29.0 4.0 32 121-152 27-58 (64)
35 PF11266 DUF3066: Protein of u 54.5 29 0.00062 35.0 5.7 46 105-150 145-191 (219)
36 PHA03162 hypothetical protein; 53.3 17 0.00036 34.6 3.7 24 107-130 13-36 (135)
37 PF05812 Herpes_BLRF2: Herpesv 53.1 21 0.00045 33.3 4.3 23 108-130 4-26 (118)
38 PF02183 HALZ: Homeobox associ 52.6 33 0.00072 26.7 4.7 30 106-135 11-40 (45)
39 PF06696 Strep_SA_rep: Strepto 52.6 25 0.00055 24.6 3.6 20 107-126 5-24 (25)
40 KOG4378 Nuclear protein COP1 [ 51.4 11 0.00024 42.7 2.6 19 110-128 653-671 (673)
41 PF13851 GAS: Growth-arrest sp 50.4 55 0.0012 32.5 7.1 48 105-152 91-138 (201)
42 PF15294 Leu_zip: Leucine zipp 50.2 38 0.00081 35.7 6.1 38 110-147 128-172 (278)
43 KOG4005 Transcription factor X 49.8 45 0.00097 34.8 6.4 41 105-145 88-135 (292)
44 PRK14983 aldehyde decarbonylas 49.3 25 0.00054 35.7 4.4 49 100-150 152-201 (231)
45 PF07407 Seadorna_VP6: Seadorn 49.1 35 0.00077 37.0 5.8 26 108-133 33-58 (420)
46 PF13118 DUF3972: Protein of u 46.7 56 0.0012 30.9 6.0 38 108-145 79-123 (126)
47 PF15079 DUF4546: Domain of un 45.6 51 0.0011 32.8 5.8 42 105-150 52-93 (205)
48 PLN03097 FHY3 Protein FAR-RED 44.9 23 0.0005 42.4 4.1 36 318-355 156-191 (846)
49 TIGR02894 DNA_bind_RsfA transc 43.9 83 0.0018 30.9 6.9 38 107-144 104-141 (161)
50 PF15058 Speriolin_N: Sperioli 43.1 33 0.00072 34.5 4.2 29 110-138 8-36 (200)
51 KOG2070 Guanine nucleotide exc 42.9 66 0.0014 36.8 6.9 49 98-148 609-657 (661)
52 PRK13169 DNA replication intia 42.8 58 0.0013 29.9 5.5 35 108-142 9-43 (110)
53 TIGR02209 ftsL_broad cell divi 41.8 48 0.001 27.6 4.5 31 105-135 29-59 (85)
54 COG4026 Uncharacterized protei 41.4 82 0.0018 32.8 6.8 42 106-147 134-175 (290)
55 PF08614 ATG16: Autophagy prot 40.5 95 0.0021 30.2 7.0 41 107-147 123-163 (194)
56 PRK14148 heat shock protein Gr 40.4 72 0.0016 31.9 6.1 67 67-146 13-79 (195)
57 PF15233 SYCE1: Synaptonemal c 39.4 61 0.0013 30.9 5.1 36 110-145 37-72 (134)
58 COG3352 FlaC Putative archaeal 39.2 82 0.0018 30.8 6.1 41 105-145 70-110 (157)
59 PF03112 DUF244: Uncharacteriz 39.0 42 0.00091 32.6 4.1 38 107-150 77-114 (158)
60 PRK14127 cell division protein 38.8 82 0.0018 29.0 5.7 37 109-145 32-68 (109)
61 PF01166 TSC22: TSC-22/dip/bun 38.3 48 0.001 27.6 3.7 24 106-129 20-43 (59)
62 PF01920 Prefoldin_2: Prefoldi 37.7 69 0.0015 27.3 4.9 45 106-150 61-105 (106)
63 PRK15422 septal ring assembly 37.4 1.2E+02 0.0026 26.7 6.2 42 105-146 16-57 (79)
64 PF13094 CENP-Q: CENP-Q, a CEN 36.6 1.2E+02 0.0027 28.5 6.9 44 107-150 41-84 (160)
65 PF09730 BicD: Microtubule-ass 36.4 81 0.0018 37.3 6.6 40 105-144 39-78 (717)
66 PF06156 DUF972: Protein of un 36.3 85 0.0018 28.6 5.4 36 108-143 9-44 (107)
67 TIGR03689 pup_AAA proteasome A 35.8 70 0.0015 36.3 5.9 40 109-148 3-42 (512)
68 PRK14161 heat shock protein Gr 35.7 1E+02 0.0022 30.4 6.3 43 105-147 17-59 (178)
69 PF15035 Rootletin: Ciliary ro 34.2 1.1E+02 0.0023 30.2 6.2 36 110-145 84-119 (182)
70 PF13815 Dzip-like_N: Iguana/D 34.0 1.1E+02 0.0024 27.8 5.8 36 107-142 80-115 (118)
71 COG3105 Uncharacterized protei 33.7 1.4E+02 0.003 28.6 6.5 40 107-146 41-84 (138)
72 PF06005 DUF904: Protein of un 33.2 1.3E+02 0.0029 25.6 5.8 33 108-140 33-65 (72)
73 PF09789 DUF2353: Uncharacteri 33.0 1.2E+02 0.0026 32.6 6.8 44 107-150 9-52 (319)
74 PF10482 CtIP_N: Tumour-suppre 32.9 46 0.001 31.1 3.2 22 109-130 98-119 (120)
75 PRK13729 conjugal transfer pil 32.7 74 0.0016 35.9 5.4 47 100-146 76-122 (475)
76 PF03962 Mnd1: Mnd1 family; I 32.3 1.3E+02 0.0027 29.7 6.3 31 116-146 137-167 (188)
77 PRK10884 SH3 domain-containing 31.7 1.5E+02 0.0032 29.8 6.8 43 105-147 98-151 (206)
78 PF04111 APG6: Autophagy prote 31.6 1.5E+02 0.0033 31.4 7.2 39 112-150 76-114 (314)
79 KOG4010 Coiled-coil protein TP 31.6 1.2E+02 0.0027 30.6 6.1 38 107-144 44-81 (208)
80 PF08826 DMPK_coil: DMPK coile 31.3 1.9E+02 0.0041 24.1 6.2 37 111-147 15-51 (61)
81 PF13851 GAS: Growth-arrest sp 31.2 1.4E+02 0.003 29.7 6.5 39 110-148 44-82 (201)
82 COG3074 Uncharacterized protei 30.7 1.4E+02 0.0029 26.0 5.4 39 105-143 16-54 (79)
83 PF12808 Mto2_bdg: Micro-tubul 30.5 74 0.0016 25.8 3.6 24 110-133 25-48 (52)
84 PRK13922 rod shape-determining 30.4 1.2E+02 0.0026 30.8 6.1 19 114-132 69-87 (276)
85 PF12325 TMF_TATA_bd: TATA ele 29.6 1.9E+02 0.0042 26.8 6.7 47 101-149 26-89 (120)
86 PRK09413 IS2 repressor TnpA; R 29.6 78 0.0017 28.5 4.1 24 107-130 78-101 (121)
87 PRK10884 SH3 domain-containing 28.9 1.8E+02 0.0039 29.3 6.8 24 119-142 137-160 (206)
88 PF11830 DUF3350: Domain of un 28.7 65 0.0014 26.6 3.1 23 105-127 27-56 (56)
89 PF10226 DUF2216: Uncharacteri 28.5 64 0.0014 32.5 3.6 24 107-130 55-78 (195)
90 PF04420 CHD5: CHD5-like prote 28.5 1.7E+02 0.0037 28.0 6.4 40 107-146 40-91 (161)
91 TIGR00219 mreC rod shape-deter 28.2 1.1E+02 0.0023 32.0 5.4 12 119-130 96-107 (283)
92 KOG4673 Transcription factor T 27.2 1.3E+02 0.0028 35.9 6.1 43 110-152 883-928 (961)
93 KOG3705 Glycoprotein 6-alpha-L 26.8 77 0.0017 35.5 4.1 44 107-150 44-87 (580)
94 PF15619 Lebercilin: Ciliary p 26.5 1.7E+02 0.0037 29.1 6.2 47 105-151 17-66 (194)
95 PF10168 Nup88: Nuclear pore c 26.0 1.8E+02 0.0038 34.5 7.1 45 107-151 579-623 (717)
96 PF09755 DUF2046: Uncharacteri 25.6 1.8E+02 0.0039 31.4 6.4 41 107-147 254-294 (310)
97 PF10224 DUF2205: Predicted co 25.3 2E+02 0.0044 25.1 5.7 37 108-151 31-67 (80)
98 PF07334 IFP_35_N: Interferon- 25.1 1.4E+02 0.0029 26.1 4.5 21 112-132 5-25 (76)
99 PRK14127 cell division protein 24.7 1.3E+02 0.0029 27.6 4.6 35 107-141 37-71 (109)
100 PF04999 FtsL: Cell division p 24.6 1E+02 0.0022 26.5 3.8 30 106-135 41-70 (97)
101 KOG1962 B-cell receptor-associ 24.2 1.7E+02 0.0036 30.1 5.7 39 108-146 152-190 (216)
102 PF10198 Ada3: Histone acetylt 24.0 1.9E+02 0.004 27.2 5.6 37 105-141 38-74 (131)
103 PF05529 Bap31: B-cell recepto 23.8 1.2E+02 0.0026 29.3 4.5 35 112-146 152-186 (192)
104 PF12711 Kinesin-relat_1: Kine 23.7 1.8E+02 0.0038 25.9 5.1 33 105-137 29-67 (86)
105 PF07526 POX: Associated with 23.4 1.8E+02 0.004 27.6 5.5 35 113-150 72-106 (140)
106 PF14662 CCDC155: Coiled-coil 22.8 2.2E+02 0.0049 28.7 6.2 41 106-146 94-134 (193)
107 PF04888 SseC: Secretion syste 22.6 2.6E+02 0.0056 28.9 6.9 44 107-150 244-287 (306)
108 PRK10803 tol-pal system protei 22.4 2.3E+02 0.0049 29.2 6.4 39 109-147 56-94 (263)
109 COG4467 Regulator of replicati 21.8 1.1E+02 0.0024 28.4 3.5 23 107-129 22-44 (114)
110 PF05377 FlaC_arch: Flagella a 21.7 1.9E+02 0.0042 23.8 4.5 33 105-137 12-44 (55)
111 PF11365 DUF3166: Protein of u 21.7 1.8E+02 0.0038 26.4 4.7 28 105-132 13-40 (96)
112 PF11932 DUF3450: Protein of u 21.6 2.8E+02 0.006 28.0 6.8 44 107-150 56-99 (251)
113 PF01486 K-box: K-box region; 21.5 1E+02 0.0022 26.9 3.2 25 107-131 75-99 (100)
114 KOG4005 Transcription factor X 21.2 2.6E+02 0.0057 29.4 6.4 17 121-137 125-141 (292)
115 TIGR03752 conj_TIGR03752 integ 20.8 2.2E+02 0.0048 32.3 6.3 41 107-147 66-106 (472)
116 PRK14162 heat shock protein Gr 20.3 2.6E+02 0.0056 28.0 6.1 42 106-147 38-79 (194)
No 1
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=99.96 E-value=1.9e-30 Score=207.93 Aligned_cols=59 Identities=59% Similarity=1.214 Sum_probs=57.2
Q ss_pred CCCCchhccccccccCCCCCCccceeccCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 008964 292 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNH 350 (547)
Q Consensus 292 ~~DGy~WRKYGQK~iKGnp~PRsYYrCt~~~gC~arKqVqr~~~D~si~~~tY~G~HnH 350 (547)
++|||+|||||||.|+|+++||+||||++.++|+|+|+|||+++|+.+++|||+|+|||
T Consensus 1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h 59 (59)
T smart00774 1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59 (59)
T ss_pred CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence 37999999999999999999999999999789999999999999999999999999998
No 2
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=99.96 E-value=8e-31 Score=210.49 Aligned_cols=59 Identities=63% Similarity=1.265 Sum_probs=52.2
Q ss_pred CCCCchhccccccccCCCCCCccceeccCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 008964 292 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHP 351 (547)
Q Consensus 292 ~~DGy~WRKYGQK~iKGnp~PRsYYrCt~~~gC~arKqVqr~~~D~si~~~tY~G~HnH~ 351 (547)
++|||+|||||||.|+|+++||+||||++ .+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus 1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~-~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~ 59 (60)
T PF03106_consen 1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTH-PGCPAKKQVQRSADDPNIVIVTYEGEHNHP 59 (60)
T ss_dssp --SSS-EEEEEEEEETTTTCEEEEEEEEC-TTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred CCCCCchhhccCcccCCCceeeEeeeccc-cChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence 47999999999999999999999999999 599999999999999999999999999997
No 3
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=94.17 E-value=0.042 Score=46.06 Aligned_cols=32 Identities=41% Similarity=0.697 Sum_probs=27.8
Q ss_pred CCCCcccceeeecCCCcEEEEEeccCCCCCCCc
Q 008964 322 SGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPP 354 (547)
Q Consensus 322 ~gC~arKqVqr~~~D~si~~~tY~G~HnH~~p~ 354 (547)
.+|+|+=.|-+.. |....++.+..+|||++-|
T Consensus 60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~P 91 (91)
T PF03101_consen 60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLCP 91 (91)
T ss_pred cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCCC
Confidence 5999999998877 7778899999999999754
No 4
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=90.85 E-value=0.12 Score=39.83 Aligned_cols=49 Identities=27% Similarity=0.559 Sum_probs=25.6
Q ss_pred CCCCchhccccccccCCCCCCccceeccCC--CCCCcccceeeecCCCcEEEEEeccCCCC
Q 008964 292 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMA--SGCPVRKQVQRCSQDRTILMTTYEGNHNH 350 (547)
Q Consensus 292 ~~DGy~WRKYGQK~iKGnp~PRsYYrCt~~--~gC~arKqVqr~~~D~si~~~tY~G~HnH 350 (547)
+-|||.-+++... ..+.|+||+.. .+|+|+=.+. .++. .+ +...++|||
T Consensus 12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~-~~~~~~HnH 62 (62)
T PF04500_consen 12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RV-VRTNGEHNH 62 (62)
T ss_dssp EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EE-EE-S---SS
T ss_pred EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EE-EECCCccCC
Confidence 4599988776555 44689999984 3799988777 3344 23 344499999
No 5
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=84.97 E-value=4 Score=32.93 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=37.4
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 104 DKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHL 144 (547)
Q Consensus 104 ~~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql 144 (547)
+++..+..|+.++..+..||..|+.-+..+...+..|+...
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788999999999999999999999999999999998764
No 6
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=82.08 E-value=2.3 Score=41.30 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=33.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLH 143 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmq 143 (547)
-+.|++.|+.+++.+..||++|+.=+..|.++|.+|=..
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999999999999999999997443
No 7
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.59 E-value=3.2 Score=42.55 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
++..++++|.|+..||-+|-+||..+-..|..|..+|-.+
T Consensus 164 e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 4556667777778888899999999999999999998876
No 8
>PRK11677 hypothetical protein; Provisional
Probab=78.60 E-value=6.6 Score=37.05 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=33.5
Q ss_pred hhHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVEN----QRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eEN----kRLK~MLsqV~~nYnaLQmql~~ 146 (547)
.+.||+.++.||++.+.|= -+--+||++|.++|+.|+.||..
T Consensus 34 le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 34 LQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888887776653 35678999999999999999865
No 9
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=76.14 E-value=8.7 Score=35.48 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=32.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQR----LRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkR----LK~MLsqV~~nYnaLQmql~~ 146 (547)
-+.||..++.||++.+.|=.. =-++|++|+++|+.|..||..
T Consensus 30 l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~ 75 (128)
T PF06295_consen 30 LEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAK 75 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888877766332 234999999999999999864
No 10
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=75.16 E-value=2.5 Score=43.85 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 111 VLRADLNKMSVENQRLRSLLNQVNND 136 (547)
Q Consensus 111 ~Lq~EL~Rv~eENkRLK~MLsqV~~n 136 (547)
.--.++.++.+||++||.=|.++...
T Consensus 63 ~~~~~~~~l~~EN~~Lr~e~~~l~~~ 88 (283)
T TIGR00219 63 ENLKDVNNLEYENYKLRQELLKKNQQ 88 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666777777777655554333
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=73.97 E-value=8 Score=36.60 Aligned_cols=37 Identities=35% Similarity=0.447 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 109 LAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 109 La~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~ 145 (547)
-..|+.|++++++||-+|+.=|+-....|.+|+.--+
T Consensus 83 k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 83 KAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3468899999999999999999999999999997654
No 12
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=73.90 E-value=8.5 Score=42.83 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLE 151 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQqq 151 (547)
++-..+++|+.|.++|++|+=.|+.+--+.|+.++..+++-||+-
T Consensus 428 ~~s~~~e~e~~rl~~e~k~~~q~~~~~~k~~~~~~~~i~ee~~~~ 472 (476)
T KOG0646|consen 428 TRSLELEAEVDRLKTELKRSLQALTHAYKELRNMLEEIYEEHQQM 472 (476)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999998888877764
No 13
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.63 E-value=17 Score=30.83 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=34.7
Q ss_pred HhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 107 IKLAVLRADLNKMSVE-------NQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eE-------NkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
+.+..||.|+.+++++ |..|+.-..++..++++.+-|+-.++.+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777776 7788888888889999999999888765
No 14
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=72.56 E-value=18 Score=29.55 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=36.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
-++++..+...++-++.||+.|++-|+.|.++-..|=+ |++++.+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~-lYE~Vs~ 49 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLS-LYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHc
Confidence 34678889999999999999999999999999987744 4455544
No 15
>smart00338 BRLZ basic region leucin zipper.
Probab=68.97 E-value=19 Score=29.04 Aligned_cols=40 Identities=23% Similarity=0.461 Sum_probs=35.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHL 144 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql 144 (547)
++..+..|+.++..+..||..|+.=++.+...+..|..++
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678889999999999999999999999888888887665
No 16
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=68.84 E-value=4.4 Score=42.16 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLN 131 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLs 131 (547)
|+..++.|+..+++||+|||++|+
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455566666666667777766664
No 17
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=68.03 E-value=7.3 Score=33.36 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=31.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRA-LQLHLC 145 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYna-LQmql~ 145 (547)
+-+..|-.+|++++..|+.| +++.+|+++|+. .|-+|.
T Consensus 25 Esv~~lN~~l~eIn~~N~~l-e~~~qm~enY~~nv~fnLe 63 (72)
T PF08650_consen 25 ESVAELNQELEEINRANKNL-EIVAQMWENYQRNVQFNLE 63 (72)
T ss_pred HHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHHHHHHHH
Confidence 44677899999999999999 999999999974 555543
No 18
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=67.80 E-value=12 Score=33.60 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=29.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDY 137 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nY 137 (547)
.+.+++.++.|+.+++.||++|+.=+..+.++.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~ 64 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQ 64 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH
Confidence 457889999999999999999999999888764
No 19
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.62 E-value=12 Score=33.87 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=13.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLR 127 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK 127 (547)
.+++.|+..|..+-|||.+||
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665
No 20
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=65.68 E-value=13 Score=30.14 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=30.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQ 141 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQ 141 (547)
.+.++..|+.++.++++||++|+.-+..+.++-..+.
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4578899999999999999999999999955544443
No 21
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=65.24 E-value=6.7 Score=39.76 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008964 109 LAVLRADLNKMSVENQRLRSLLN 131 (547)
Q Consensus 109 La~Lq~EL~Rv~eENkRLK~MLs 131 (547)
+..|++|-+++++||.+|+.-+.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444
No 22
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=64.13 E-value=22 Score=36.14 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=38.9
Q ss_pred hhHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAV----LRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALT 148 (547)
Q Consensus 105 ~k~eLa~----Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lm 148 (547)
...||++ .++||+|.++|=.+|+.||..+++.=-..|-|+-.+|
T Consensus 13 TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 13 TTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458887 7999999999999999999999999999888887776
No 23
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=63.01 E-value=21 Score=37.84 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=38.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALT 148 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lm 148 (547)
++.|.+.|..|++.+..+|++||+-++++.+.-..|+--|.++.
T Consensus 246 kRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 246 KRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999987666543
No 24
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=59.58 E-value=19 Score=33.08 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLL 130 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~ML 130 (547)
.+++.|+.+|..+-|||.+|+.--
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN 45 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLEN 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777776543
No 25
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=59.24 E-value=33 Score=33.59 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=38.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhC
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHL----CALTQLE 151 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql----~~lmQqq 151 (547)
++|-+.|+.||-+|.+|=+-||..|.-=.+....|+.+| +.-|+|.
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqn 77 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQN 77 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHH
Confidence 455577999999999999999999999999999999887 4445553
No 26
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=59.09 E-value=20 Score=35.26 Aligned_cols=39 Identities=33% Similarity=0.463 Sum_probs=34.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHL 144 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql 144 (547)
+.++..|+.+.++...||++|+.=+..+.++|.+|-..+
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im 148 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIM 148 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999999999999999985443
No 27
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=58.19 E-value=9.1 Score=38.47 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 109 LAVLRADLNKMSVENQRLRSLLNQV 133 (547)
Q Consensus 109 La~Lq~EL~Rv~eENkRLK~MLsqV 133 (547)
+..+++||.++++||..|+++.+++
T Consensus 134 ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 134 IEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554443
No 28
>PHA03155 hypothetical protein; Provisional
Probab=57.03 E-value=12 Score=34.69 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=20.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLL 130 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~ML 130 (547)
..-++.|.+||.|++.||+.||.-|
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445779999999999999999544
No 29
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=56.78 E-value=23 Score=39.80 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLEP 152 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQqq~ 152 (547)
-|+..|-.|.+.+.|++-|-.=|..|.-+|..||-+.+..||+..
T Consensus 398 ~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKn 442 (527)
T PF15066_consen 398 ALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKN 442 (527)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 467788999999999999999999999999999999999999964
No 30
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=56.44 E-value=29 Score=27.29 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=25.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVN 134 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~ 134 (547)
++.....|+.++..+.+||..|+..+..+.
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556778899999999999999988887764
No 31
>PF14645 Chibby: Chibby family
Probab=56.31 E-value=26 Score=32.24 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=26.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHL 144 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql 144 (547)
.+..+|++|-+-++-+++-|=+||++.+-+|+.++.+|
T Consensus 78 ~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 78 KENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555555555555666689999999999888764
No 32
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.29 E-value=32 Score=38.65 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=14.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLL 130 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~ML 130 (547)
.++..|..|=+++++||+|||.+.
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455556666666667777776633
No 33
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=55.20 E-value=19 Score=29.56 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLNQ 132 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLsq 132 (547)
+-+.|..|-+.+.++|..||.+|.|
T Consensus 34 ~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 34 DRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4477899999999999999999976
No 34
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=55.10 E-value=19 Score=29.00 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008964 121 VENQRLRSLLNQVNNDYRALQLHLCALTQLEP 152 (547)
Q Consensus 121 eENkRLK~MLsqV~~nYnaLQmql~~lmQqq~ 152 (547)
..|..||..|.++.+.....|.+++++|.++.
T Consensus 27 ~~np~lR~~l~~~~~~~~~~~~~l~~~m~~kG 58 (64)
T PF07875_consen 27 CANPELRQILQQILNECQQMQYELFNYMNQKG 58 (64)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999863
No 35
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=54.53 E-value=29 Score=34.98 Aligned_cols=46 Identities=33% Similarity=0.346 Sum_probs=37.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 105 KKIKLAVLRADLNKMSVENQRL-RSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRL-K~MLsqV~~nYnaLQmql~~lmQq 150 (547)
-|.-+++.++||++.+.||--| +.||++|..|-..|.|-=.++|..
T Consensus 145 Lk~~f~~~k~el~~An~~nLPlv~~MLnqV~~Da~vL~Meke~lved 191 (219)
T PF11266_consen 145 LKANFEQSKAELEEANRENLPLVWKMLNQVAADARVLGMEKEALVED 191 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5667888999999999999876 789999999999999986666543
No 36
>PHA03162 hypothetical protein; Provisional
Probab=53.29 E-value=17 Score=34.57 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLL 130 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~ML 130 (547)
.-++.|.+||.+++.||+.||.-|
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999998543
No 37
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=53.06 E-value=21 Score=33.30 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRSLL 130 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~ML 130 (547)
-++.|.+||.++..||+.||.-|
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl 26 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKL 26 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45779999999999999999543
No 38
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.64 E-value=33 Score=26.73 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=23.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNN 135 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~ 135 (547)
|..-..|++|-.++..||++|+.+|..+..
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888999999999999988876654
No 39
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=52.56 E-value=25 Score=24.61 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRL 126 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRL 126 (547)
..|+.-++||.||+.+|...
T Consensus 5 akla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 5 AKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 46789999999999999875
No 40
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=51.45 E-value=11 Score=42.70 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008964 110 AVLRADLNKMSVENQRLRS 128 (547)
Q Consensus 110 a~Lq~EL~Rv~eENkRLK~ 128 (547)
+.|++||++++||||+||-
T Consensus 653 e~l~aelk~lreenq~lr~ 671 (673)
T KOG4378|consen 653 EMLKAELKFLREENQTLRC 671 (673)
T ss_pred HHHHHHHHHHHHhhhhhhc
Confidence 4477888888888888873
No 41
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=50.45 E-value=55 Score=32.51 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=43.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLEP 152 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQqq~ 152 (547)
.+..+..++.||..++-|++-|..-+.+|...+..|+.+|...++.-+
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999999999988887643
No 42
>PF15294 Leu_zip: Leucine zipper
Probab=50.16 E-value=38 Score=35.75 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 008964 110 AVLRADLNKMSVENQRLRSLLNQV-------NNDYRALQLHLCAL 147 (547)
Q Consensus 110 a~Lq~EL~Rv~eENkRLK~MLsqV-------~~nYnaLQmql~~l 147 (547)
+-|..|+.|+++||++||.-|-.+ .+.=..|+.+|-++
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~l 172 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKEL 172 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 449999999999999999955444 44445678887664
No 43
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=49.84 E-value=45 Score=34.78 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=21.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRL-------RSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRL-------K~MLsqV~~nYnaLQmql~ 145 (547)
+|..++.+.-||..+-|||++| |..=.-+...-+.|.|.|.
T Consensus 88 KKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 88 KKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555555555555555555 4444444444555666554
No 44
>PRK14983 aldehyde decarbonylase; Provisional
Probab=49.34 E-value=25 Score=35.72 Aligned_cols=49 Identities=27% Similarity=0.287 Sum_probs=40.9
Q ss_pred cccchhhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 100 HKKHDKKIKLAVLRADLNKMSVENQRL-RSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 100 dKr~~~k~eLa~Lq~EL~Rv~eENkRL-K~MLsqV~~nYnaLQmql~~lmQq 150 (547)
+.| -|.-+++.++||.+.+.+|--| +.||+||..|-..|.|-=.++|..
T Consensus 152 e~W--Lk~~f~~~K~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lved 201 (231)
T PRK14983 152 EEW--LKANFETSKDELEEANKENLPLVWKMLNQVADDAAVLGMEKEALVED 201 (231)
T ss_pred HHH--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345 6677889999999999999866 799999999999999976666543
No 45
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=49.10 E-value=35 Score=36.97 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLNQV 133 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLsqV 133 (547)
|+..||.|=.++|.||..||.=|+++
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444444
No 46
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=46.71 E-value=56 Score=30.88 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLNQVNNDY-------RALQLHLC 145 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nY-------naLQmql~ 145 (547)
-|++.++=++-+++||+=||+-|-.|-+-| -.||+||-
T Consensus 79 vl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 79 VLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456677778999999999999999999999 45676664
No 47
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=45.56 E-value=51 Score=32.77 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=33.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
-|+||...++||.+-.||-+.+|.. |-+||--||- |++||..
T Consensus 52 LkNeLREVREELkEKmeEIKQIKdi---MDKDFDKL~E-FVEIMKe 93 (205)
T PF15079_consen 52 LKNELREVREELKEKMEEIKQIKDI---MDKDFDKLHE-FVEIMKE 93 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHH-HHHHHHH
Confidence 5688999999999999998888865 4578988985 6777755
No 48
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=44.90 E-value=23 Score=42.38 Aligned_cols=36 Identities=31% Similarity=0.632 Sum_probs=29.1
Q ss_pred ccCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCcc
Q 008964 318 CTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPA 355 (547)
Q Consensus 318 Ct~~~gC~arKqVqr~~~D~si~~~tY~G~HnH~~p~~ 355 (547)
|+- .||+|+=.|.+.. |..-.++-+..+|||++-+.
T Consensus 156 ~tR-tGC~A~m~Vk~~~-~gkW~V~~fv~eHNH~L~p~ 191 (846)
T PLN03097 156 CAK-TDCKASMHVKRRP-DGKWVIHSFVKEHNHELLPA 191 (846)
T ss_pred ccC-CCCceEEEEEEcC-CCeEEEEEEecCCCCCCCCc
Confidence 554 6999999998854 45578899999999998654
No 49
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=43.93 E-value=83 Score=30.89 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHL 144 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql 144 (547)
.|...|+.|+.++.++|+.|..=+..+.+.+..++--+
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555554443
No 50
>PF15058 Speriolin_N: Speriolin N terminus
Probab=43.12 E-value=33 Score=34.53 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 110 AVLRADLNKMSVENQRLRSLLNQVNNDYR 138 (547)
Q Consensus 110 a~Lq~EL~Rv~eENkRLK~MLsqV~~nYn 138 (547)
+.|+..|+|...||++||..+.-|.+|+.
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirEN~e 36 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIRENHE 36 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 55788999999999999999998888854
No 51
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=42.90 E-value=66 Score=36.77 Aligned_cols=49 Identities=16% Similarity=0.328 Sum_probs=39.4
Q ss_pred cccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 98 IEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALT 148 (547)
Q Consensus 98 ~edKr~~~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lm 148 (547)
+|+|. -...+-+|+.|+.+++.||+|+|..|+.=-+--+.|+.-|..++
T Consensus 609 leeks--lvdtvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~l 657 (661)
T KOG2070|consen 609 LEEKS--LVDTVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKML 657 (661)
T ss_pred ecccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555 34566789999999999999999999998888888887766554
No 52
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=42.80 E-value=58 Score=29.92 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQL 142 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQm 142 (547)
.+..|..-|+.+-+|=..||..|..+.+.=.+|++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555544
No 53
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=41.77 E-value=48 Score=27.60 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=26.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNN 135 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~ 135 (547)
...+++.++.|+.+.++||.+|+.-+..+..
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3467889999999999999999988887665
No 54
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=41.41 E-value=82 Score=32.76 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=33.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
|..+..+++.|++..+||.-|..-|+++...|+.+|-+|-.+
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788888888888888888888888999998887654
No 55
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=40.50 E-value=95 Score=30.24 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
.++..|+.++....+|-+-+...+..+...|-+||++|-.+
T Consensus 123 ~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~ 163 (194)
T PF08614_consen 123 AELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML 163 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666777777777788888999999998643
No 56
>PRK14148 heat shock protein GrpE; Provisional
Probab=40.40 E-value=72 Score=31.94 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=45.4
Q ss_pred ccCcccccccccccccccccccccCCCCccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 67 KLDINTGLNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 67 ~~~VNtGLnLlt~ntgsdqS~~VDDg~SS~~~edKr~~~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
++||-|.-++-|+.+..... +++-. -..++..|+.+|...++|...|+..+-+..-+|-.++.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~-----------~e~~~--~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 13 SLDIETAAQVETAQESASGA-----------LEELS--VEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred ccchHHHHHhhhcchhhhhh-----------hcccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777776554433332 22222 234567788888888888888888888888888888877643
No 57
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=39.38 E-value=61 Score=30.87 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 110 AVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 110 a~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~ 145 (547)
.+|+.||..++.|.=.|++.|+.--.-|+-||.|--
T Consensus 37 eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcq 72 (134)
T PF15233_consen 37 EALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQ 72 (134)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999998753
No 58
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=39.24 E-value=82 Score=30.78 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=36.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~ 145 (547)
.+..++..++||+|+.++=++|.+..+.|.++.|-+.-++.
T Consensus 70 ~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~ 110 (157)
T COG3352 70 QKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTP 110 (157)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhH
Confidence 45677889999999999999999999999999999887654
No 59
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=38.96 E-value=42 Score=32.63 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
.|+..||.||+++..||++...=+-. -|+|.+-.+|.+
T Consensus 77 ~EI~~lq~ElnKiqnEn~k~ekp~Kd------~LK~ki~~I~~~ 114 (158)
T PF03112_consen 77 MEIDSLQTELNKIQNENKKREKPIKD------LLKIKIDEIMNK 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHH------HHHHHHHHHHhh
Confidence 58899999999999999987322221 355555555544
No 60
>PRK14127 cell division protein GpsB; Provisional
Probab=38.81 E-value=82 Score=28.96 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 109 LAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 109 La~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~ 145 (547)
|..+-.+++++..||.+|++.+.++...-..|+.++.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666777777777777666666666666654
No 61
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=38.26 E-value=48 Score=27.62 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=18.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSL 129 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~M 129 (547)
|++++.|++.+.+...||..||..
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777788888888888888754
No 62
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.75 E-value=69 Score=27.33 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=38.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
+.-+..|+.++..+.+|=.+|+..+..+.+.+..|+..|..++++
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~~ 105 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFGQ 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344577999999999999999999999999999999999876654
No 63
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.35 E-value=1.2e+02 Score=26.66 Aligned_cols=42 Identities=10% Similarity=0.177 Sum_probs=30.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
+-+.+.-||.|+++.|++|..|..=...+...--+|...-..
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~q 57 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNH 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445677799999999999999988766655555555544433
No 64
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=36.65 E-value=1.2e+02 Score=28.46 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=39.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
..++.|++|+.++..+.++-...|.++.++..++...+-....+
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45668999999999999999999999999999999988776554
No 65
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=36.37 E-value=81 Score=37.32 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=29.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHL 144 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql 144 (547)
-+.||..++.++.++..||.||..+...+.+++-.|..+.
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~ 78 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELER 78 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888877777665554443
No 66
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.27 E-value=85 Score=28.57 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLH 143 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmq 143 (547)
.+..|...|+.+.+|=..||..+..+.+.=..|++-
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~E 44 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIE 44 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555553
No 67
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=35.78 E-value=70 Score=36.27 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 109 LAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALT 148 (547)
Q Consensus 109 La~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lm 148 (547)
+..|+.++..+.+.|+||.++|.+.......|+.++-.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 42 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLA 42 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999999999999987653
No 68
>PRK14161 heat shock protein GrpE; Provisional
Probab=35.66 E-value=1e+02 Score=30.36 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=33.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
...-++++++||....+|...|+..|-+..-+|-.++.+...-
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke 59 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKA 59 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345788888888888888888888888888888888776543
No 69
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=34.23 E-value=1.1e+02 Score=30.24 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 110 AVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 110 a~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~ 145 (547)
+.|++.|+.++..|+.|+.=|.+++.++..|+-.|.
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 449999999999999999999999999999877664
No 70
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=34.05 E-value=1.1e+02 Score=27.75 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=27.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQL 142 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQm 142 (547)
.++..|++++..+.+|+++|+.++.+..+.-..|+.
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888877777666654
No 71
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.75 E-value=1.4e+02 Score=28.64 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQ----RLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENk----RLK~MLsqV~~nYnaLQmql~~ 146 (547)
.||..+|.+|+.-+.|=. +=-+||..+.+||..|+.|+.+
T Consensus 41 ~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dYqklyqHmA~ 84 (138)
T COG3105 41 YELEKVKAQLDEYRQELVKHFARSAELLKTLAQDYQKLYQHMAK 84 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666665543 3468999999999999999875
No 72
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.21 E-value=1.3e+02 Score=25.56 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLNQVNNDYRAL 140 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaL 140 (547)
+...|+.|-..+++||++|+.=-+.+...-.+|
T Consensus 33 ~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 33 KNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777777776655555555554
No 73
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=32.99 E-value=1.2e+02 Score=32.64 Aligned_cols=44 Identities=25% Similarity=0.361 Sum_probs=40.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
+-|-.|-.||+.-..|=-.+|.|.+++...|.+|+....+++++
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~ 52 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQE 52 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55889999999999999999999999999999999999888765
No 74
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=32.91 E-value=46 Score=31.09 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008964 109 LAVLRADLNKMSVENQRLRSLL 130 (547)
Q Consensus 109 La~Lq~EL~Rv~eENkRLK~ML 130 (547)
+..|..||+.+++||++|++=|
T Consensus 98 i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 98 IFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHhHHHHHHHHHHHh
Confidence 4567799999999999999744
No 75
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.71 E-value=74 Score=35.93 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=36.9
Q ss_pred cccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 100 HKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 100 dKr~~~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
.|..+-+.+|+.|+.||+.|...++.|...|+.+...-..|+.|+..
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556788888888888888888888999999999999988743
No 76
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.25 E-value=1.3e+02 Score=29.75 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 116 LNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 116 L~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
+++++++.++++.-+++.+.|+..|+-.+..
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3477888899999999999999999988765
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.71 E-value=1.5e+02 Score=29.83 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=22.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRS-----------LLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~-----------MLsqV~~nYnaLQmql~~l 147 (547)
.+.|++.|++||.++..+....+. -.+++.+.|..|+.++..+
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666544332222 2222566666666666543
No 78
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=31.64 E-value=1.5e+02 Score=31.40 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 112 LRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 112 Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
|..||..+.+|=++|+..-.+.-+.||.||+++..+.++
T Consensus 76 l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e 114 (314)
T PF04111_consen 76 LDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEE 114 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555556677888888888765544
No 79
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=31.63 E-value=1.2e+02 Score=30.59 Aligned_cols=38 Identities=26% Similarity=0.279 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHL 144 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql 144 (547)
.|-+.|+.||-+|.||-.-||.+|.-=.+..-.|...|
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456999999999999999999999888888888776
No 80
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=31.33 E-value=1.9e+02 Score=24.09 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 111 VLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 111 ~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
.+++||.+|++.|.-+..-|..-...-..|+-++-.+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999988888888888887554
No 81
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=31.20 E-value=1.4e+02 Score=29.70 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 110 AVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALT 148 (547)
Q Consensus 110 a~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lm 148 (547)
.....+|.++..||+||++=|.+....-..|+.++..+-
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 446667888888888888888888888888888876653
No 82
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.71 E-value=1.4e+02 Score=26.03 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=26.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLH 143 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmq 143 (547)
+-..+.-||.|+++++|+|..|..-....-..--+|+..
T Consensus 16 AvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 334566799999999999998776555444444444433
No 83
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=30.47 E-value=74 Score=25.80 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 110 AVLRADLNKMSVENQRLRSLLNQV 133 (547)
Q Consensus 110 a~Lq~EL~Rv~eENkRLK~MLsqV 133 (547)
..+..+|.++..||+.||.-|+..
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999988754
No 84
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.37 E-value=1.2e+02 Score=30.82 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008964 114 ADLNKMSVENQRLRSLLNQ 132 (547)
Q Consensus 114 ~EL~Rv~eENkRLK~MLsq 132 (547)
..+.++.+||++||.=+.+
T Consensus 69 ~~~~~l~~en~~L~~e~~~ 87 (276)
T PRK13922 69 ASLFDLREENEELKKELLE 87 (276)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544433
No 85
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.64 E-value=1.9e+02 Score=26.83 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=0.0
Q ss_pred ccchhhHhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008964 101 KKHDKKIKLAVLRADLNKM-----------------SVENQRLRSLLNQVNNDYRALQLHLCALTQ 149 (547)
Q Consensus 101 Kr~~~k~eLa~Lq~EL~Rv-----------------~eENkRLK~MLsqV~~nYnaLQmql~~lmQ 149 (547)
++ .+.|+..|+.|+.++ ++|.+.+..-+..+...|..|+.++-.+++
T Consensus 26 r~--~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 26 RR--LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 86
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=29.61 E-value=78 Score=28.54 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=16.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLL 130 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~ML 130 (547)
.|+..|+.||+++..||.-||.-+
T Consensus 78 ~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 78 KQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777666544
No 87
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.91 E-value=1.8e+02 Score=29.30 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 119 MSVENQRLRSLLNQVNNDYRALQL 142 (547)
Q Consensus 119 v~eENkRLK~MLsqV~~nYnaLQm 142 (547)
+++||++|++=|....+.=..|+.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333333
No 88
>PF11830 DUF3350: Domain of unknown function (DUF3350); InterPro: IPR021785 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 50 to 64 amino acids in length.
Probab=28.73 E-value=65 Score=26.59 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=17.1
Q ss_pred hhHhHHHH-------HHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVL-------RADLNKMSVENQRLR 127 (547)
Q Consensus 105 ~k~eLa~L-------q~EL~Rv~eENkRLK 127 (547)
..+||..| |.=|-||-.||+||+
T Consensus 27 t~eelR~LWrkAI~QqIlL~RMEKEN~kLq 56 (56)
T PF11830_consen 27 TREELRELWRKAIHQQILLLRMEKENQKLQ 56 (56)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 55666554 456899999999984
No 89
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=28.47 E-value=64 Score=32.48 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLL 130 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~ML 130 (547)
.|+..|+....|+.+||+.||++.
T Consensus 55 ~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999864
No 90
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.46 E-value=1.7e+02 Score=28.03 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQ------------RLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENk------------RLK~MLsqV~~nYnaLQmql~~ 146 (547)
.+...|+.|+.++++|.. ||+.-++++.+++..|+.....
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888875 6888889999888888877643
No 91
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=28.23 E-value=1.1e+02 Score=31.98 Aligned_cols=12 Identities=58% Similarity=0.803 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 008964 119 MSVENQRLRSLL 130 (547)
Q Consensus 119 v~eENkRLK~ML 130 (547)
+++||+|||.||
T Consensus 96 l~~EN~rLr~LL 107 (283)
T TIGR00219 96 LKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 92
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=27.25 E-value=1.3e+02 Score=35.86 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhCC
Q 008964 110 AVLRADLNKMSVENQRLRS---LLNQVNNDYRALQLHLCALTQLEP 152 (547)
Q Consensus 110 a~Lq~EL~Rv~eENkRLK~---MLsqV~~nYnaLQmql~~lmQqq~ 152 (547)
.+|-+||-.+-.||.+||+ |+..|..-|.+||.++..++|--.
T Consensus 883 s~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyG 928 (961)
T KOG4673|consen 883 SSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYG 928 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777888888999986 777888999999999999998854
No 93
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.79 E-value=77 Score=35.50 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=33.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
.++.++.+-|++.++.|+-||.||+.+...-+.=|...+...++
T Consensus 44 R~~sq~l~~le~l~qqNEdLk~~~e~lr~~~~~d~~~am~~v~~ 87 (580)
T KOG3705|consen 44 RAWSQTLEALEKLQQQNEDLKSILEKLRQERNDDHKKAMEQVHQ 87 (580)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccccchhhHHHHHhh
Confidence 46678889999999999999999999988877444444444444
No 94
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=26.53 E-value=1.7e+02 Score=29.12 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=34.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhC
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQ---VNNDYRALQLHLCALTQLE 151 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsq---V~~nYnaLQmql~~lmQqq 151 (547)
-++++..|+.+|.++.-||+-||.+--+ --..|-.-+..|-.+|++.
T Consensus 17 L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h 66 (194)
T PF15619_consen 17 LQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRH 66 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5589999999999999999999988655 2345555555555555553
No 95
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.00 E-value=1.8e+02 Score=34.50 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=38.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLE 151 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQqq 151 (547)
.+|..+++|++.+++.-++|.+=++++.+.+..|..++-.+++.-
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888889999999999999999988887764
No 96
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=25.59 E-value=1.8e+02 Score=31.36 Aligned_cols=41 Identities=27% Similarity=0.262 Sum_probs=34.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
..++....|...+++||+||+.-|..-.+-.-+|=.||...
T Consensus 254 ~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lses 294 (310)
T PF09755_consen 254 EKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSES 294 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677789999999999999999999999998888653
No 97
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.29 E-value=2e+02 Score=25.13 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLE 151 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQqq 151 (547)
.|..|-..++.|++||.+|+. .=.-||..+-.||...
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~-------EN~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLES-------ENEYLQQYIGNLMSSS 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 455666777888999998873 3345777777777653
No 98
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=25.07 E-value=1.4e+02 Score=26.10 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008964 112 LRADLNKMSVENQRLRSLLNQ 132 (547)
Q Consensus 112 Lq~EL~Rv~eENkRLK~MLsq 132 (547)
|++|--|+++|-+||+.=|.+
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333
No 99
>PRK14127 cell division protein GpsB; Provisional
Probab=24.67 E-value=1.3e+02 Score=27.64 Aligned_cols=35 Identities=11% Similarity=0.313 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQ 141 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQ 141 (547)
.+++.|..|+.++++||.+|+.=|.+....=...+
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 56677888888999999988888888777555444
No 100
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=24.57 E-value=1e+02 Score=26.54 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=22.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNN 135 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~ 135 (547)
..++..++.|..+.++||++|+-=+.....
T Consensus 41 ~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 41 FYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 356788888888888888888865555443
No 101
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=24.20 E-value=1.7e+02 Score=30.05 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
|.+.+.+|++..++|=++...=|+...+++-+|++|+..
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555543
No 102
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=24.05 E-value=1.9e+02 Score=27.24 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=30.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQ 141 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQ 141 (547)
.-.||-.||.||..+...|...|..|-.+.+.--+-|
T Consensus 38 I~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~Q 74 (131)
T PF10198_consen 38 ISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQ 74 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999888887644433
No 103
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.79 E-value=1.2e+02 Score=29.33 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 112 LRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 112 Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
.++|....++|-++||.=|+....++.+|+.|...
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777777777777654
No 104
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=23.72 E-value=1.8e+02 Score=25.88 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=22.9
Q ss_pred hhHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRA------DLNKMSVENQRLRSLLNQVNNDY 137 (547)
Q Consensus 105 ~k~eLa~Lq~------EL~Rv~eENkRLK~MLsqV~~nY 137 (547)
-+.|+..|++ ||-|-..||.+|++.|.++-+=|
T Consensus 29 L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 29 LKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665 55667789999998887765544
No 105
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=23.41 E-value=1.8e+02 Score=27.56 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 113 RADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 113 q~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
+.|+.+.+ -||-.||++|.+.|+.-..|+-.++..
T Consensus 72 ~~e~q~kK---~KLl~mL~eVd~RY~qY~~Qmq~Vvss 106 (140)
T PF07526_consen 72 RQELQRKK---AKLLSMLDEVDRRYRQYYDQMQAVVSS 106 (140)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 489999999999999887777666544
No 106
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.77 E-value=2.2e+02 Score=28.73 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=32.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
+.|--.|.+||+.+.+||.+|..=.+-+-+.|..|.+.=.+
T Consensus 94 EkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~ 134 (193)
T PF14662_consen 94 EKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKAT 134 (193)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHH
Confidence 34566788999999999999999888888888888665443
No 107
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=22.57 E-value=2.6e+02 Score=28.89 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
.+...+++++...+..=+.|..++++..+.+..+.-.|-++|..
T Consensus 244 ~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~ 287 (306)
T PF04888_consen 244 KEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKS 287 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777766666555543
No 108
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.43 E-value=2.3e+02 Score=29.21 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 109 LAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 109 La~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
+..|+..|+.++.|..+||+.+++....-..|+.+--++
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888888888887776666666554443
No 109
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=21.76 E-value=1.1e+02 Score=28.45 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSL 129 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~M 129 (547)
.|++.|+.-|+.+-|||-.|+.=
T Consensus 22 ~el~~lK~~l~~lvEEN~~L~lE 44 (114)
T COG4467 22 AELGGLKQHLGSLVEENTALRLE 44 (114)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhh
Confidence 45566666666666666666543
No 110
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.72 E-value=1.9e+02 Score=23.80 Aligned_cols=33 Identities=6% Similarity=0.188 Sum_probs=21.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDY 137 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nY 137 (547)
.+..+..++.|++.++++.++|.+-+..+..=|
T Consensus 12 ~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 12 IESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777766665555555
No 111
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=21.71 E-value=1.8e+02 Score=26.40 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=19.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQ 132 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsq 132 (547)
+++|.+.|+--|-++-+||++|+.=|.+
T Consensus 13 vEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 13 VEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777754433
No 112
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.64 E-value=2.8e+02 Score=28.02 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
.++..|+.|++.++..|++|...++...+.-..|+.++-.+-..
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777777777777776655433
No 113
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.49 E-value=1e+02 Score=26.93 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLN 131 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLs 131 (547)
.++..|+.....+.+||..|+.++.
T Consensus 75 ~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 75 EQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888888899999999998875
No 114
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=21.20 E-value=2.6e+02 Score=29.41 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008964 121 VENQRLRSLLNQVNNDY 137 (547)
Q Consensus 121 eENkRLK~MLsqV~~nY 137 (547)
.+|++|++-|+....+.
T Consensus 125 ~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 125 AKNHELDSELELLRQEL 141 (292)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34555666665544443
No 115
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.77 E-value=2.2e+02 Score=32.30 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
.++..++.||.++..||++|+.=.+++.+.=.++--|+-..
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 57788999999999999999998888877444444444333
No 116
>PRK14162 heat shock protein GrpE; Provisional
Probab=20.29 E-value=2.6e+02 Score=28.05 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=34.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
..++..|+.++..+.+|...|++-|-++.-+|-.++.++..-
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE 79 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKE 79 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888899999999999988888888888888876543
Done!