Query 008964
Match_columns 547
No_of_seqs 266 out of 764
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.9E-34 6.4E-39 240.1 7.1 75 279-354 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 4.6E-34 1.6E-38 238.7 4.9 75 279-354 4-78 (78)
3 2zxx_A Geminin; coiled-coil, c 90.2 0.2 6.8E-06 42.2 3.4 28 107-134 41-68 (79)
4 1t2k_D Cyclic-AMP-dependent tr 81.5 2.7 9.3E-05 32.8 5.6 41 105-145 20-60 (61)
5 2wt7_A Proto-oncogene protein 79.7 5.6 0.00019 31.4 6.9 41 105-145 21-61 (63)
6 1uii_A Geminin; human, DNA rep 79.3 2.2 7.5E-05 36.2 4.6 27 107-133 53-79 (83)
7 1wlq_A Geminin; coiled-coil; 2 79.0 1.9 6.4E-05 36.6 4.1 27 107-133 45-71 (83)
8 1ci6_A Transcription factor AT 76.8 6 0.0002 31.3 6.3 42 105-146 21-62 (63)
9 1jnm_A Proto-oncogene C-JUN; B 73.8 3.6 0.00012 32.3 4.2 41 105-145 20-60 (62)
10 2rpr_A Flywch-type zinc finger 73.7 1.8 6.2E-05 35.6 2.6 50 291-353 23-74 (87)
11 1hjb_A Ccaat/enhancer binding 71.7 7.8 0.00027 32.9 6.1 40 107-146 36-75 (87)
12 2j5u_A MREC protein; bacterial 71.7 2.4 8.2E-05 41.7 3.4 24 108-131 37-60 (255)
13 2wvr_A Geminin; DNA replicatio 71.1 3.9 0.00013 39.8 4.6 27 107-133 122-148 (209)
14 4dzo_A Mitotic spindle assembl 69.0 6.9 0.00024 35.0 5.5 38 107-144 4-41 (123)
15 1ci6_A Transcription factor AT 66.1 5.6 0.00019 31.5 3.8 28 106-133 36-63 (63)
16 3m91_A Proteasome-associated A 66.0 20 0.00067 27.8 6.7 42 106-147 8-49 (51)
17 2wt7_B Transcription factor MA 65.9 5.8 0.0002 34.0 4.1 35 107-141 55-89 (90)
18 3hnw_A Uncharacterized protein 65.7 15 0.00051 33.3 7.1 42 106-147 88-129 (138)
19 3s9g_A Protein hexim1; cyclin 64.7 4.6 0.00016 35.3 3.3 21 107-127 65-85 (104)
20 1gu4_A CAAT/enhancer binding p 59.6 10 0.00034 31.6 4.4 39 107-145 36-74 (78)
21 1dh3_A Transcription factor CR 58.8 9.8 0.00033 29.5 3.9 33 105-137 20-52 (55)
22 1t6f_A Geminin; coiled-coil, c 58.1 7.8 0.00027 28.2 2.9 23 107-129 14-36 (37)
23 2w6b_A RHO guanine nucleotide 58.1 30 0.001 27.3 6.5 41 107-147 10-50 (56)
24 1hjb_A Ccaat/enhancer binding 57.7 8.4 0.00029 32.7 3.6 29 107-135 50-78 (87)
25 1t2k_D Cyclic-AMP-dependent tr 55.9 12 0.00042 29.1 4.1 25 106-130 35-59 (61)
26 3oja_A Leucine-rich immune mol 53.7 19 0.00065 37.3 6.3 46 105-150 433-478 (487)
27 1wrd_A TOM1, target of MYB pro 53.3 32 0.0011 29.5 6.7 44 107-150 6-65 (103)
28 2oa5_A Hypothetical protein BQ 51.4 11 0.00036 33.5 3.3 21 108-128 9-29 (110)
29 2dgc_A Protein (GCN4); basic d 51.2 21 0.00072 28.3 4.8 33 105-137 28-60 (63)
30 4h22_A Leucine-rich repeat fli 49.8 27 0.00091 30.7 5.6 40 105-144 42-81 (103)
31 2oc5_A Hypothetical protein; D 48.0 18 0.0006 35.5 4.5 45 105-149 169-214 (244)
32 3l4f_A RHO guanine nucleotide 47.8 52 0.0018 26.4 6.5 42 110-151 10-51 (61)
33 2c9l_Y EB1, zebra, BZLF1 trans 46.3 21 0.00073 28.2 4.0 27 109-135 24-50 (63)
34 1gu4_A CAAT/enhancer binding p 45.5 9.8 0.00034 31.6 2.1 27 107-133 50-76 (78)
35 1gd2_E Transcription factor PA 44.8 21 0.00073 29.1 3.9 28 109-136 38-65 (70)
36 3m9b_A Proteasome-associated A 44.0 26 0.00087 35.1 5.2 43 107-150 54-96 (251)
37 3a7p_A Autophagy protein 16; c 43.7 57 0.002 30.4 7.1 41 107-147 68-115 (152)
38 3mud_A DNA repair protein XRCC 40.7 26 0.0009 33.3 4.5 32 107-138 142-173 (175)
39 2wt7_A Proto-oncogene protein 40.1 34 0.0012 26.8 4.4 26 106-131 36-61 (63)
40 2yy0_A C-MYC-binding protein; 38.8 49 0.0017 25.5 4.9 27 108-134 20-46 (53)
41 1zxa_A CGMP-dependent protein 38.7 32 0.0011 28.0 4.1 31 105-135 23-53 (67)
42 2jee_A YIIU; FTSZ, septum, coi 38.1 1.1E+02 0.0037 25.8 7.3 27 106-132 19-45 (81)
43 2yy0_A C-MYC-binding protein; 37.9 57 0.0019 25.1 5.2 26 106-131 25-50 (53)
44 2oqq_A Transcription factor HY 37.8 27 0.00093 26.2 3.2 24 107-130 17-40 (42)
45 2efr_A General control protein 36.5 81 0.0028 29.3 7.0 41 107-147 105-145 (155)
46 3mtu_E Head morphogenesis prot 36.2 51 0.0018 27.6 5.0 34 106-139 43-76 (77)
47 4etp_A Kinesin-like protein KA 36.1 48 0.0017 34.6 6.1 9 411-419 295-304 (403)
48 2oxj_A Hybrid alpha/beta pepti 35.9 48 0.0016 23.8 4.1 23 109-131 10-32 (34)
49 2xdj_A Uncharacterized protein 34.4 1.1E+02 0.0038 25.6 6.8 41 109-149 22-62 (83)
50 1wt6_A Myotonin-protein kinase 34.4 97 0.0033 26.1 6.4 37 110-146 27-63 (81)
51 3a7o_A Autophagy protein 16; c 34.0 1.1E+02 0.0039 25.3 6.6 40 107-146 18-57 (75)
52 3a5t_A Transcription factor MA 33.9 0.53 1.8E-05 41.6 -7.7 36 111-146 69-104 (107)
53 3bas_A Myosin heavy chain, str 33.7 1.2E+02 0.0041 25.2 7.0 39 107-145 21-59 (89)
54 1uii_A Geminin; human, DNA rep 32.5 58 0.002 27.6 4.8 28 116-143 41-68 (83)
55 1jnm_A Proto-oncogene C-JUN; B 32.3 19 0.00065 28.1 1.8 25 107-131 36-60 (62)
56 3n7n_E Monopolin complex subun 32.1 9.6 0.00033 33.0 0.0 23 107-129 50-72 (95)
57 3q8t_A Beclin-1; autophagy, AT 31.8 1.4E+02 0.0046 25.4 7.1 38 112-149 37-74 (96)
58 2wuj_A Septum site-determining 31.4 37 0.0013 26.3 3.2 28 107-134 27-54 (57)
59 2z5i_A TM, general control pro 30.9 36 0.0012 26.2 3.0 32 107-138 19-50 (52)
60 1lwu_C Fibrinogen gamma chain; 29.8 1.1E+02 0.0036 31.5 7.2 45 107-151 12-56 (323)
61 1wmi_B RELB, hypothetical prot 28.0 31 0.0011 27.8 2.3 19 112-130 9-27 (67)
62 3o0z_A RHO-associated protein 27.3 1.5E+02 0.0052 27.9 7.2 34 108-141 98-138 (168)
63 3q4f_C DNA repair protein XRCC 26.8 46 0.0016 31.9 3.6 22 107-128 161-182 (186)
64 1wlq_A Geminin; coiled-coil; 2 25.1 2E+02 0.0068 24.4 6.8 34 111-144 28-61 (83)
65 1am9_A Srebp-1A, protein (ster 25.0 70 0.0024 26.2 4.0 26 107-132 50-75 (82)
66 1oxz_A ADP-ribosylation factor 24.9 1.4E+02 0.0047 28.4 6.6 45 106-150 68-129 (186)
67 1o3x_A ADP-ribosylation factor 24.9 1.5E+02 0.0052 26.8 6.6 45 106-150 43-104 (140)
68 4etp_A Kinesin-like protein KA 24.8 1.3E+02 0.0045 31.3 7.0 14 114-127 24-37 (403)
69 1naf_A ADP-ribosylation factor 23.6 1.3E+02 0.0046 27.8 6.1 45 106-150 52-113 (158)
70 2xdj_A Uncharacterized protein 23.6 1.8E+02 0.0063 24.2 6.3 43 107-149 27-69 (83)
71 2zqm_A Prefoldin beta subunit 23.5 2.2E+02 0.0076 23.6 7.0 44 107-150 70-113 (117)
72 3m9b_A Proteasome-associated A 23.2 55 0.0019 32.7 3.6 20 108-127 76-95 (251)
73 3u06_A Protein claret segregat 22.6 1.6E+02 0.0053 30.9 7.1 37 110-146 20-56 (412)
74 1nkp_B MAX protein, MYC proto- 22.0 66 0.0023 26.1 3.3 33 113-145 46-78 (83)
75 3u06_A Protein claret segregat 21.9 1.3E+02 0.0043 31.6 6.2 36 106-141 9-44 (412)
76 3v86_A De novo design helix; c 21.6 75 0.0026 21.3 2.8 21 106-126 6-26 (27)
77 3hnw_A Uncharacterized protein 21.4 2.5E+02 0.0084 25.3 7.2 41 107-147 82-122 (138)
78 3i00_A HIP-I, huntingtin-inter 21.2 3E+02 0.01 24.4 7.6 23 106-128 14-36 (120)
79 3bas_A Myosin heavy chain, str 21.0 2E+02 0.0069 23.8 6.1 39 112-150 12-50 (89)
80 2zxx_A Geminin; coiled-coil, c 20.9 52 0.0018 27.6 2.4 31 112-142 25-55 (79)
81 1go4_E MAD1 (mitotic arrest de 20.8 1.1E+02 0.0036 26.7 4.5 33 106-145 11-43 (100)
82 3sja_C Golgi to ER traffic pro 20.7 2.1E+02 0.007 23.2 5.8 39 107-145 6-56 (65)
83 1cz6_A Protein (androctonin); 20.6 31 0.0011 23.0 0.8 8 314-321 16-23 (26)
84 3sjb_C Golgi to ER traffic pro 20.3 2.1E+02 0.0072 24.6 6.1 40 107-146 23-74 (93)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-34 Score=240.07 Aligned_cols=75 Identities=52% Similarity=1.123 Sum_probs=72.0
Q ss_pred eeEEEEeccCCccCCCCchhccccccccCCCCCCccceeccCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCc
Q 008964 279 ARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPP 354 (547)
Q Consensus 279 ~rv~v~~~s~~~~~~DGy~WRKYGQK~iKGnp~PRsYYrCt~~~gC~arKqVqr~~~D~si~~~tY~G~HnH~~p~ 354 (547)
.||+|++.++.++++|||+|||||||.|||+++||+|||||+ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 378999999999999999999999999999999999999998 799999999999999999999999999999875
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=4.6e-34 Score=238.71 Aligned_cols=75 Identities=53% Similarity=1.056 Sum_probs=68.8
Q ss_pred eeEEEEeccCCccCCCCchhccccccccCCCCCCccceeccCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCc
Q 008964 279 ARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPP 354 (547)
Q Consensus 279 ~rv~v~~~s~~~~~~DGy~WRKYGQK~iKGnp~PRsYYrCt~~~gC~arKqVqr~~~D~si~~~tY~G~HnH~~p~ 354 (547)
.||.|+++++.++++|||+|||||||.|||+++||+|||||+ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478889999999999999999999999999999999999999 799999999999999999999999999999873
No 3
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=90.22 E-value=0.2 Score=42.16 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVN 134 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~ 134 (547)
.++..+++||.++++||+.|++|++++.
T Consensus 41 ~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677789999999999999999999874
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=81.53 E-value=2.7 Score=32.81 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=37.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~ 145 (547)
++..+..|+.+.+.+..||..|+.-+..+......|...|+
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778899999999999999999999999999999988775
No 5
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=79.71 E-value=5.6 Score=31.35 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=36.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~ 145 (547)
++..+..|+.|...+..||..|+.-+..+...+..|...|.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999988888876654
No 6
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=79.27 E-value=2.2 Score=36.21 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQV 133 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV 133 (547)
.++..|++|+..+++||++||.|.+++
T Consensus 53 ~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 53 KEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666665554
No 7
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=79.00 E-value=1.9 Score=36.64 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQV 133 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV 133 (547)
.++..+++|+.++++||++|+++-+++
T Consensus 45 ~~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 45 KEIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777776654
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.81 E-value=6 Score=31.35 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=36.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
++.+...|+.+...+..||..|+.-++.+...+..|..-|.+
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 557788999999999999999999999999998888765543
No 9
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=73.79 E-value=3.6 Score=32.28 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=33.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~ 145 (547)
++..+..|+.+.+.+..||..|+.-++.+......|...|+
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999888888876664
No 10
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=73.71 E-value=1.8 Score=35.62 Aligned_cols=50 Identities=22% Similarity=0.405 Sum_probs=32.4
Q ss_pred cCCCCchhccccccccCCCCCCccceeccCC--CCCCcccceeeecCCCcEEEEEeccCCCCCCC
Q 008964 291 MISDGCQWRKYGQKMAKGNPCPRAYYRCTMA--SGCPVRKQVQRCSQDRTILMTTYEGNHNHPLP 353 (547)
Q Consensus 291 ~~~DGy~WRKYGQK~iKGnp~PRsYYrCt~~--~gC~arKqVqr~~~D~si~~~tY~G~HnH~~p 353 (547)
++-|||...+--+ . ..+.|.+|+.. .+|+|+-.... ++ + ...+.|||++.
T Consensus 23 Lv~~Gy~Y~~~~~--~----~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA--A----GEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE--C----SSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCC
T ss_pred EEECCEEEEeeec--C----CCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCc
Confidence 4579998775322 1 23689999973 58999854432 22 2 24688999744
No 11
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=71.73 E-value=7.8 Score=32.90 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=33.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
.....++.+...+.+||.+|+.-+.++.+....|+.-|+.
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688899999999999999999999999988876653
No 12
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=71.68 E-value=2.4 Score=41.72 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLN 131 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLs 131 (547)
+|.....++.++++||+|||.+|+
T Consensus 37 ~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 37 ELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555566666677777776654
No 13
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=71.15 E-value=3.9 Score=39.77 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQV 133 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV 133 (547)
.++..|++|+.++++||+.||.+.+++
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777888888888888877766
No 14
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=68.99 E-value=6.9 Score=34.96 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHL 144 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql 144 (547)
.|++.|++|++....-|+|||++-.+=...|+.-=--|
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~L 41 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTL 41 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999888887764444
No 15
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=66.13 E-value=5.6 Score=31.52 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQV 133 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV 133 (547)
+.+...|+.++.++..|++-||.||..|
T Consensus 36 ~~~N~~L~~~i~~L~~E~~~Lk~ll~e~ 63 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEIQYLKDLIEEV 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4567889999999999999999999764
No 16
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=65.99 E-value=20 Score=27.76 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=36.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
...+..|+.++..+.+-|.||-.+|.+--..--.|+-++-.+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678999999999999999999999999988888887654
No 17
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=65.92 E-value=5.8 Score=34.00 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQ 141 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQ 141 (547)
.+...|+.|++.+++||.+++.=++.+-..|.+|+
T Consensus 55 ~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677999999999999999999999999998885
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.65 E-value=15 Score=33.31 Aligned_cols=42 Identities=10% Similarity=0.202 Sum_probs=33.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
+.|+..|+.||-...+++..++.-++.+.+.++.||.++..+
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888888888888888775
No 19
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=64.72 E-value=4.6 Score=35.33 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLR 127 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK 127 (547)
..+..|.+||+|++.||++|+
T Consensus 65 ~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999997
No 20
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=59.63 E-value=10 Score=31.59 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=31.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~ 145 (547)
..-..++.+...+..||.+|+.-+.++......|+.-|+
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334568888999999999999999998888888875543
No 21
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=58.81 E-value=9.8 Score=29.46 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=28.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDY 137 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nY 137 (547)
++.-+..|..++..+.+||..|+.-|+.+...|
T Consensus 20 Kk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667789999999999999999999888876654
No 22
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=58.10 E-value=7.8 Score=28.23 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSL 129 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~M 129 (547)
.++..-++|+.++++||..|+++
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHhh
Confidence 56777889999999999999864
No 23
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=58.06 E-value=30 Score=27.29 Aligned_cols=41 Identities=10% Similarity=0.268 Sum_probs=30.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
.-.=+|+.|+.+++.||++|+..|+.=.+.-..|-.-+-.+
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999999988777666665444333
No 24
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=57.68 E-value=8.4 Score=32.70 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNN 135 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~ 135 (547)
.|...|+.|+..++.|...||.||.++-.
T Consensus 50 ~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 50 AENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 45678999999999999999999987543
No 25
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.86 E-value=12 Score=29.06 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLL 130 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~ML 130 (547)
+.+...|+.|+..+.+|+..||.+|
T Consensus 35 ~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 35 SSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566789999999999999999987
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.69 E-value=19 Score=37.29 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=32.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
.+.+....+.|.++++|||.||+..|+++...-..-...+.++.++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 4455667788888888999999988888776655555555555544
No 27
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=53.34 E-value=32 Score=29.53 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhh
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLN----------------QVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLs----------------qV~~nYnaLQmql~~lmQq 150 (547)
++++.+..||++|+.==+-|.+||+ .+...+..+|-+++.++..
T Consensus 6 eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~ 65 (103)
T 1wrd_A 6 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQ 65 (103)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457789999999998899999998 4556677788888887763
No 28
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=51.40 E-value=11 Score=33.55 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRS 128 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~ 128 (547)
-++.|.+||.|++.||+.||.
T Consensus 9 t~EeLaaeL~kLqmENK~LKk 29 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQ 29 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999984
No 29
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=51.15 E-value=21 Score=28.30 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=25.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDY 137 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nY 137 (547)
++..+..|+.++..+..||..|+.-++++..-|
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999998777765443
No 30
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.85 E-value=27 Score=30.71 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=29.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHL 144 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql 144 (547)
.++.++.++-|+++...|-++||.+.+.+...+..||-+|
T Consensus 42 ~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 42 LEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777788887777777777777665
No 31
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Probab=47.95 E-value=18 Score=35.49 Aligned_cols=45 Identities=33% Similarity=0.376 Sum_probs=38.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 008964 105 KKIKLAVLRADLNKMSVENQRL-RSLLNQVNNDYRALQLHLCALTQ 149 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRL-K~MLsqV~~nYnaLQmql~~lmQ 149 (547)
-|.-+++.++||++.+.||--| +.||+||..|-..|.|-=.++|.
T Consensus 169 Lk~~f~~~K~el~~ANr~nLPlv~~MLnqV~~Da~vL~Mekealve 214 (244)
T 2oc5_A 169 LKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIE 214 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 5667888999999999999876 78999999999999987655553
No 32
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=47.80 E-value=52 Score=26.43 Aligned_cols=42 Identities=10% Similarity=0.239 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008964 110 AVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLE 151 (547)
Q Consensus 110 a~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQqq 151 (547)
=+|+-|+..+++||++++..|+..-+-=..|..-+-.++.+.
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~ 51 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 468899999999999999999999988888888777776664
No 33
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=46.34 E-value=21 Score=28.22 Aligned_cols=27 Identities=41% Similarity=0.390 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 109 LAVLRADLNKMSVENQRLRSLLNQVNN 135 (547)
Q Consensus 109 La~Lq~EL~Rv~eENkRLK~MLsqV~~ 135 (547)
|.-.++=-.-..+||.|||-++.|||-
T Consensus 24 lqh~r~vaaaks~en~rlr~l~kqmcp 50 (63)
T 2c9l_Y 24 LQHYREVAAAKSSENDRLRLLLKQMCP 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhcccchHHHHHHHHhCC
Confidence 333333334456899999999999874
No 34
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=45.50 E-value=9.8 Score=31.64 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=20.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQV 133 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV 133 (547)
.|...|+.|+..+..|...||.||.++
T Consensus 50 ~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 50 AENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 456678888888999999998888664
No 35
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=44.78 E-value=21 Score=29.09 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 109 LAVLRADLNKMSVENQRLRSLLNQVNND 136 (547)
Q Consensus 109 La~Lq~EL~Rv~eENkRLK~MLsqV~~n 136 (547)
+..|+.+...+..||+.||..+..+...
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455567777777777666544
No 36
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=44.02 E-value=26 Score=35.06 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
..+..|+.++..+.+.|++|+..|.+..+....|+.++..+ ++
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL-~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL-GQ 96 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH-HS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 44677999999999999999999999999999999998764 44
No 37
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=43.68 E-value=57 Score=30.38 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLR-------SLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK-------~MLsqV~~nYnaLQmql~~l 147 (547)
.++..|+.|+..+..+.+.|. ..++.+...|-+||.||-.+
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888 67888999999999998644
No 38
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=40.68 E-value=26 Score=33.27 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYR 138 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYn 138 (547)
.++..|+.||.+.+++|+.+.++|+++..+-+
T Consensus 142 keiD~LEDeL~~eKek~k~i~~eLDqTl~eL~ 173 (175)
T 3mud_A 142 KSIDDLEEKVAHAKEENLNMHQMLDQTLLELN 173 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778899999999999999999998876654
No 39
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=40.08 E-value=34 Score=26.78 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=21.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLN 131 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLs 131 (547)
+.+...|+.|+..+.+|...|+.||.
T Consensus 36 ~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 36 EDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567799999999999999999985
No 40
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.78 E-value=49 Score=25.52 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLRSLLNQVN 134 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK~MLsqV~ 134 (547)
+.+.|+.|+.+++.++..|+.-+..++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555544444433
No 41
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.71 E-value=32 Score=27.99 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=25.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNN 135 (547)
Q Consensus 105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~ 135 (547)
++..+..|+.+|+.-.+|.+.||.-|++++.
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456889999999999999999988887653
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.06 E-value=1.1e+02 Score=25.75 Aligned_cols=27 Identities=11% Similarity=0.282 Sum_probs=20.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQ 132 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsq 132 (547)
-..+.-||.|+++.+++|..|..=...
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999886654444
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.85 E-value=57 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=18.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLN 131 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLs 131 (547)
+.|++.||.+++.+.++++.|+.=|.
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777776554
No 44
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=37.81 E-value=27 Score=26.17 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLL 130 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~ML 130 (547)
...+.|.+-+.-+..||+.||.+|
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 455667777777888999888776
No 45
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=36.47 E-value=81 Score=29.27 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
.++..|..+|...++.++.+..+|+++...++.++-.|..+
T Consensus 105 k~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~ 145 (155)
T 2efr_A 105 KSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHL 145 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 45677888888899999999999999999999999888765
No 46
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=36.18 E-value=51 Score=27.56 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=28.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRA 139 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYna 139 (547)
..++..|..+|..-+++|+.+..+|+++..+-+.
T Consensus 43 EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~ELns 76 (77)
T 3mtu_E 43 VSEYNDLEEKVAHAKEENLNMHQMLDQTLLELNN 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc
Confidence 3566778999999999999999999998876553
No 47
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.12 E-value=48 Score=34.56 Aligned_cols=9 Identities=56% Similarity=0.700 Sum_probs=4.8
Q ss_pred ceee-ecCCC
Q 008964 411 TVTL-DLTHS 419 (547)
Q Consensus 411 titl-dlt~~ 419 (547)
.++| ||.-+
T Consensus 295 kL~lVDLAGS 304 (403)
T 4etp_A 295 TLNLVDLAGS 304 (403)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEECCCC
Confidence 4554 77643
No 48
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.86 E-value=48 Score=23.81 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008964 109 LAVLRADLNKMSVENQRLRSLLN 131 (547)
Q Consensus 109 La~Lq~EL~Rv~eENkRLK~MLs 131 (547)
.+.|-.|=..+..|..|||.||.
T Consensus 10 VEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 10 VXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh
Confidence 35566677777889999999984
No 49
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=34.43 E-value=1.1e+02 Score=25.56 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008964 109 LAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQ 149 (547)
Q Consensus 109 La~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQ 149 (547)
+..|+..|..++.|..+||+.+++....-..|+.+--++.+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888777776655544
No 50
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=34.43 E-value=97 Score=26.15 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 110 AVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 110 a~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
..+++||.+|++.|.-+-.=|......+..|+.++..
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~ 63 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999998888888888888888887654
No 51
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=34.00 E-value=1.1e+02 Score=25.28 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
..++.||+||..--.|=.+|++.|..=.+||-.|---+..
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiis 57 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELIS 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHH
Confidence 4788999999999999999999999999999877666543
No 52
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=33.88 E-value=0.53 Score=41.55 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 111 VLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 111 ~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
.|+.|++++.+||.+|+.=++.+-..|.+|+.++..
T Consensus 69 ~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~s 104 (107)
T 3a5t_A 69 ELQQEVEKLASENASMKLELDALRSKYEALQNFART 104 (107)
T ss_dssp TTSSTTTTTTSTTSHHHHTTTSSSSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888899999999999999999999999866543
No 53
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=33.70 E-value=1.2e+02 Score=25.19 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~ 145 (547)
.++..|++.|.+....=+.|..-..+++..++.|+.|+.
T Consensus 21 eel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~ 59 (89)
T 3bas_A 21 KQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMK 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555556677777778888888887743
No 54
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.50 E-value=58 Score=27.58 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 116 LNKMSVENQRLRSLLNQVNNDYRALQLH 143 (547)
Q Consensus 116 L~Rv~eENkRLK~MLsqV~~nYnaLQmq 143 (547)
|..+=+||++|..-|+.+.+.-..|+..
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~e 68 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKE 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555544444444433
No 55
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.32 E-value=19 Score=28.08 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=17.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLN 131 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLs 131 (547)
.+...|+.|+..+.+|+..||.||-
T Consensus 36 ~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 36 AQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999998874
No 56
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=32.11 E-value=9.6 Score=32.99 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSL 129 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~M 129 (547)
.++..|-.||..++.||.+||++
T Consensus 50 rQv~qLt~~lQ~~~~Ene~Lke~ 72 (95)
T 3n7n_E 50 RQIAQLNKQLQLSFQENEKLLSV 72 (95)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999975
No 57
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=31.79 E-value=1.4e+02 Score=25.40 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008964 112 LRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQ 149 (547)
Q Consensus 112 Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQ 149 (547)
|..||..+.+|=++|..==.+.-+.||+++.+++.+.-
T Consensus 37 l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 37 VAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444544455566789999999987643
No 58
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.43 E-value=37 Score=26.26 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVN 134 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~ 134 (547)
.=|..+..+++++..||+.|+.-|.++.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888888888887766543
No 59
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=30.89 E-value=36 Score=26.17 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYR 138 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYn 138 (547)
.++..|..||..-+++++.+..+|+++...++
T Consensus 19 k~ID~LEdeL~~eKek~~~i~~eLD~tl~el~ 50 (52)
T 2z5i_A 19 KLVDDLEDELYAQKLKYKAISEELDHALNDMT 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999999765544
No 60
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.85 E-value=1.1e+02 Score=31.49 Aligned_cols=45 Identities=16% Similarity=0.052 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLE 151 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQqq 151 (547)
+|+..|+.-|.++.++-+.|+.+|..+......|+.++..++.+-
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777888888899999999999999999999998887663
No 61
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=28.03 E-value=31 Score=27.78 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008964 112 LRADLNKMSVENQRLRSLL 130 (547)
Q Consensus 112 Lq~EL~Rv~eENkRLK~ML 130 (547)
.-.||+|++.|=|||-.||
T Consensus 9 vl~ELeRlkveiQRLE~ml 27 (67)
T 1wmi_B 9 VLKELERLKVEIQRLEAML 27 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5679999999999999887
No 62
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=27.33 E-value=1.5e+02 Score=27.91 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=26.4
Q ss_pred hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNK-------MSVENQRLRSLLNQVNNDYRALQ 141 (547)
Q Consensus 108 eLa~Lq~EL~R-------v~eENkRLK~MLsqV~~nYnaLQ 141 (547)
.+..|+.||+| |..||++|-+.|..+.+.+.+|.
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555555 45699999999999999999998
No 63
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=26.82 E-value=46 Score=31.91 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRS 128 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~ 128 (547)
.+++.|+++...+.+||+||..
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999964
No 64
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.12 E-value=2e+02 Score=24.35 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 111 VLRADLNKMSVENQRLRSLLNQVNNDYRALQLHL 144 (547)
Q Consensus 111 ~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql 144 (547)
.-|.-|..+=+||++|..-+++..+.-..|+-..
T Consensus 28 ~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en 61 (83)
T 1wlq_A 28 QRRKALYEALKENEKLHKEIEQKDSEIARLRKEN 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888777766666666543
No 65
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=25.05 E-value=70 Score=26.17 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=21.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQ 132 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsq 132 (547)
+=+..|+.++.++.+||..|+..+.+
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677999999999999999987754
No 66
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=24.88 E-value=1.4e+02 Score=28.36 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=36.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhh
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQ-----------------VNNDYRALQLHLCALTQL 150 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsq-----------------V~~nYnaLQmql~~lmQq 150 (547)
.++++.+..||++|+.==+-|.+||+. +...+..+|-.|+.+...
T Consensus 68 ~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 129 (186)
T 1oxz_A 68 MEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 129 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999999988999999984 667777888888887765
No 67
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=24.86 E-value=1.5e+02 Score=26.79 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=35.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhh
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQ-----------------VNNDYRALQLHLCALTQL 150 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsq-----------------V~~nYnaLQmql~~lmQq 150 (547)
.++++.+..||++|+.==+-|.+||+. +...+..+|-.|+.+...
T Consensus 43 ~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e 104 (140)
T 1o3x_A 43 MEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788889999999988999999984 566677777777776654
No 68
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.76 E-value=1.3e+02 Score=31.32 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 008964 114 ADLNKMSVENQRLR 127 (547)
Q Consensus 114 ~EL~Rv~eENkRLK 127 (547)
.+++++.+|++.|+
T Consensus 24 ~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 24 EKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 69
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=23.65 E-value=1.3e+02 Score=27.81 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=37.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhh
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQ-----------------VNNDYRALQLHLCALTQL 150 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsq-----------------V~~nYnaLQmql~~lmQq 150 (547)
.++++.+..||++|+.==+-|.+||+. +...+..+|-.|+.+...
T Consensus 52 ~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 113 (158)
T 1naf_A 52 MEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 113 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788889999999988999999984 667778888888887765
No 70
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=23.57 E-value=1.8e+02 Score=24.21 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQ 149 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQ 149 (547)
.+|..|+.|+.+++=.++.+.--|+++.+.-..++..|-..+.
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~ 69 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999888888888888887777654433
No 71
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.50 E-value=2.2e+02 Score=23.64 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=38.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
.-+..|...++.+.++=++|..-+..+.+.+..|+.+|..++++
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44566888888889999999999999999999999999998865
No 72
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.20 E-value=55 Score=32.69 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 008964 108 KLAVLRADLNKMSVENQRLR 127 (547)
Q Consensus 108 eLa~Lq~EL~Rv~eENkRLK 127 (547)
+|..++.||.++++|+++|+
T Consensus 76 ~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 76 TLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44445555555555555544
No 73
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.59 E-value=1.6e+02 Score=30.94 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 110 AVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 110 a~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~ 146 (547)
..|+.++.+..+|++.|++-|-+-...-+.|++++.+
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 20 EELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333444444433
No 74
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.04 E-value=66 Score=26.08 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 113 RADLNKMSVENQRLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 113 q~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~ 145 (547)
..=|..+.+++++|..-++++...-..|+.++.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455555543
No 75
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.90 E-value=1.3e+02 Score=31.64 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=21.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQ 141 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQ 141 (547)
+.||..|+++++.+.+++++++.-|..+.+.|...+
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 44 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN 44 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666555443
No 76
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=21.61 E-value=75 Score=21.34 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=12.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRL 126 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRL 126 (547)
|.|...|+.|.+-++.|=+-|
T Consensus 6 kdevgelkgevralkdevkdl 26 (27)
T 3v86_A 6 KDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHhcc
Confidence 455566666666666665544
No 77
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.40 E-value=2.5e+02 Score=25.29 Aligned_cols=41 Identities=5% Similarity=0.080 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL 147 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l 147 (547)
.++..+..||..++.|...+++=++.+.+.+..|+..+-.+
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666666666665543
No 78
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=21.23 E-value=3e+02 Score=24.36 Aligned_cols=23 Identities=4% Similarity=0.213 Sum_probs=15.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRS 128 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~ 128 (547)
+..+..|+.|+++++.|.++|+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~ 36 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKT 36 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777654
No 79
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=21.04 E-value=2e+02 Score=23.81 Aligned_cols=39 Identities=8% Similarity=0.122 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008964 112 LRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL 150 (547)
Q Consensus 112 Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~lmQq 150 (547)
..+||..+.+|-++|++-|.........|..++..+++.
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~e 50 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQ 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666677777777777777777777766665
No 80
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.93 E-value=52 Score=27.59 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 112 LRADLNKMSVENQRLRSLLNQVNNDYRALQL 142 (547)
Q Consensus 112 Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQm 142 (547)
=+.=|..+=+||++|..-|++.-+--..|+-
T Consensus 25 RR~AL~eaL~EN~~Lh~~ie~~~eEi~~Lke 55 (79)
T 2zxx_A 25 RRKALYEALKENEKLHKEIEQKDSEIARLRK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677778888888888776666666653
No 81
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.79 E-value=1.1e+02 Score=26.70 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=25.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 106 k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~ 145 (547)
.+++..|+.|+..+..||.||+.=++ .|-++|.
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~-------~LE~~Le 43 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKR-------MLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 35788899999999999999987664 4556653
No 82
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=20.73 E-value=2.1e+02 Score=23.20 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQ------------RLRSLLNQVNNDYRALQLHLC 145 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENk------------RLK~MLsqV~~nYnaLQmql~ 145 (547)
.+...|+.|+-+++.|+. ||+.=++.+..+|..|...+-
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455778888888888885 899999999999999987764
No 83
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=20.57 E-value=31 Score=22.99 Aligned_cols=8 Identities=50% Similarity=1.248 Sum_probs=6.6
Q ss_pred cceeccCC
Q 008964 314 AYYRCTMA 321 (547)
Q Consensus 314 sYYrCt~~ 321 (547)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999974
No 84
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=20.33 E-value=2.1e+02 Score=24.61 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 008964 107 IKLAVLRADLNKMSVENQ------------RLRSLLNQVNNDYRALQLHLCA 146 (547)
Q Consensus 107 ~eLa~Lq~EL~Rv~eENk------------RLK~MLsqV~~nYnaLQmql~~ 146 (547)
.+...|+.|+-+++.|+. ||+.=++.+.++|..|...|..
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888888885 8888888888888888877653
Done!