BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008966
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 983 bits (2542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/542 (84%), Positives = 499/542 (92%)
Query: 1 MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQG 60
ML RKELFKNTLRKAAYAWKRIIELRLS+EEA+MLR VDEPAFTDLHWGMF+PAIKGQG
Sbjct: 74 MLPRKELFKNTLRKAAYAWKRIIELRLSQEEATMLRRYVDEPAFTDLHWGMFIPAIKGQG 133
Query: 61 TDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKW 120
TD+Q +KWLPLAYKM+IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKW
Sbjct: 134 TDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKW 193
Query: 121 WPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAY 180
WPGGLGKVSTHAVVYARLITDG+D+GVNGFIVQLRSLEDH PLPG+T+GDIGMKFGNGAY
Sbjct: 194 WPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIGMKFGNGAY 253
Query: 181 NTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASC 240
N+MDNGVL F+HVRIPR+QMLMRVSQVT+EGKYVQS++PRQLLYGTMVYVRQ+IVADAS
Sbjct: 254 NSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTMVYVRQSIVADASL 313
Query: 241 ALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWL 300
A+SRAVCIATRYSAVRRQFGS+NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWL
Sbjct: 314 AMSRAVCIATRYSAVRRQFGSQNGGQETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWL 373
Query: 301 YTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELF 360
YTDVTQRL ANDFSTLPEAHACTAGLKSLTT+ATADGIEECRKLCGGHGYLCSSGLPELF
Sbjct: 374 YTDVTQRLAANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELF 433
Query: 361 AVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 420
AVYVPACTYEGDN+VL LQVARFLMKT+SQLG G PVGT +YMGR E LMQC V++A
Sbjct: 434 AVYVPACTYEGDNVVLQLQVARFLMKTISQLGTGKKPVGTVSYMGRIEHLMQCRSDVKQA 493
Query: 421 EDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFXXXXXXXXXXXXXHCQLIVVSK 480
EDWL PSA+LEAFEAR+ RMSVACA+NLSKF NQEEGF HCQLIVVSK
Sbjct: 494 EDWLKPSAVLEAFEARSARMSVACAKNLSKFENQEEGFAELAADLVEAAVAHCQLIVVSK 553
Query: 481 FIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYS 540
+IEKLQQ+IPGKGVK LE+LC IY+L ++HKH GDF+ TG IT+KQ SLAN+QLR+LYS
Sbjct: 554 YIEKLQQNIPGKGVKQQLEVLCGIYSLFILHKHQGDFLGTGYITSKQGSLANDQLRALYS 613
Query: 541 QV 542
Q+
Sbjct: 614 QL 615
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/541 (80%), Positives = 485/541 (89%)
Query: 2 LSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGT 61
LSRKELFK+TLRK A+A+KRIIELRL+EEEA LR +D+PA+ DLHWGMFVPAIKGQGT
Sbjct: 56 LSRKELFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGT 115
Query: 62 DEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWW 121
+EQ +KWL LA KM+IIGCYAQTELGHGSNVQGLETTAT DP+TDEFVIH+PT T+SKWW
Sbjct: 116 EEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWW 175
Query: 122 PGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN 181
PGGLGKVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN
Sbjct: 176 PGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYN 235
Query: 182 TMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCA 241
+MDNG L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQTIVADAS A
Sbjct: 236 SMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNA 295
Query: 242 LSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 301
LSRAVCIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY
Sbjct: 296 LSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 355
Query: 302 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFA 361
TDVT+RL A+DF+TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL SGLPELFA
Sbjct: 356 TDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFA 415
Query: 362 VYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAE 421
VYVPACTYEGDN+VL LQVARFLMKTV+QLG G +PVGTT YMGRA L+QC GVQKAE
Sbjct: 416 VYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQCRSGVQKAE 475
Query: 422 DWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFXXXXXXXXXXXXXHCQLIVVSKF 481
DWLNP +LEAFEARA+RM+V CA+NLSKF NQE+GF HCQLIVVSKF
Sbjct: 476 DWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVSKF 535
Query: 482 IEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQ 541
I KL+QDI GKGVK L LC+IYAL+L+HKHLGDF+ST CIT KQASLAN+QLRSLY+Q
Sbjct: 536 IAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHLGDFLSTNCITPKQASLANDQLRSLYTQ 595
Query: 542 V 542
V
Sbjct: 596 V 596
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 238/552 (43%), Positives = 346/552 (62%), Gaps = 15/552 (2%)
Query: 1 MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASM-LRSSVDE--PAFTDLHWGMFVPAIK 57
L+R + ++ ++K+A K++ E +S+ E M ++SV P DLH GMF+P +
Sbjct: 53 FLTRSQRYEVAVKKSATMVKKMREYGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLL 112
Query: 58 GQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTS 117
Q T EQ +++ A+ +EI G YAQTE+GHG++++GLETTAT+DP+T EF+++SPT+TS
Sbjct: 113 HQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTS 172
Query: 118 SKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGN 177
KWWPGGLGK S HA+V A+LIT G+ +G++ F+V +R + H PLPGIT+GDIG KFG
Sbjct: 173 IKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFG- 231
Query: 178 GAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 237
Y MDNG L+ ++ RIPR MLM+ +QV +G YV+ + +L YGTMV+VR +V +
Sbjct: 232 --YEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKP-LSNKLTYGTMVFVRSFLVGN 288
Query: 238 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWL 297
A+ +LS+A IA RYSAVRRQ K PE Q++D++TQQ +LFPLLA+AYAF FVG ++
Sbjct: 289 AAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYM 348
Query: 298 KWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 357
K Y + + + D S LPE HA TAGLK+ TT GIEECR CGGHGY SSG+P
Sbjct: 349 KETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIP 408
Query: 358 ELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGR--AEQLMQCHC 415
++ + PACT+EG+N V++LQ ARFLMK Q+ G + G +Y+ ++++
Sbjct: 409 NIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSQRIQPQQV 468
Query: 416 GVQKAEDWLNP-SAILEAFEARAIRMSVACAQNL----SKFTNQEEGFXXXXXXXXXXXX 470
V +N + EA++ RA R+ A+NL S ++E +
Sbjct: 469 AVWPTMVDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASE 528
Query: 471 XHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASL 530
HC +VV F +KL + I K V+ +L LC +Y+L+ + + GDF+ IT Q S
Sbjct: 529 AHCHYVVVKVFSDKLPK-IQDKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQ 587
Query: 531 ANEQLRSLYSQV 542
N ++ L + +
Sbjct: 588 VNARILELLTLI 599
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 135/348 (38%), Gaps = 69/348 (19%)
Query: 32 ASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSN 91
A + R F +H + + I G++ Q +K+LP ++ + C+A TE +GS+
Sbjct: 123 AEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSD 182
Query: 92 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITDGQDHGVN 148
GL TTAT V + K W G ST A +++AR T Q +N
Sbjct: 183 ASGLGTTAT-------KVEGGWKINGQKRWIGN----STFADLLIIFARNTTTNQ---IN 228
Query: 149 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVT 208
GFIV+ + PG+ I K G + NG + ++V +P L V+
Sbjct: 229 GFIVKKDA-------PGLKATKIPNKIG---LRMVQNGDILLQNVFVPDEDRLPGVNSFQ 278
Query: 209 REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVC-IATRYSAVRRQFGSKNGGPE 267
K ++ V + +VA +S + + RY R+QFG+
Sbjct: 279 DTSK--------------VLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAP----- 319
Query: 268 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 327
+ ++ Q +L +L + A +G L LY E T G
Sbjct: 320 --LAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLY----------------ETGQMTPGQA 361
Query: 328 SLTTTATADGIEEC----RKLCGGHGYLCSSGLPELFAVYVPACTYEG 371
SL + E R+L GG+G L + + F P TYEG
Sbjct: 362 SLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEG 409
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 135/348 (38%), Gaps = 69/348 (19%)
Query: 32 ASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSN 91
A + R F +H + + I G++ Q +K+LP ++ + C+A TE +GS+
Sbjct: 123 AEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSD 182
Query: 92 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITDGQDHGVN 148
GL TTAT V + K W G ST A +++AR T Q +N
Sbjct: 183 ASGLGTTAT-------KVEGGWKINGQKRWIGN----STFADLLIIFARNTTTNQ---IN 228
Query: 149 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVT 208
GFIV+ + PG+ I K G + NG + ++V +P L V+
Sbjct: 229 GFIVKKDA-------PGLKATKIPNKIG---LRMVQNGDILLQNVFVPDEDRLPGVNSFQ 278
Query: 209 REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVC-IATRYSAVRRQFGSKNGGPE 267
K ++ V + +VA +S + + RY R+QFG+
Sbjct: 279 DTSK--------------VLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAP----- 319
Query: 268 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 327
+ ++ Q +L +L + A +G L LY E T G
Sbjct: 320 --LAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLY----------------ETGQMTPGQA 361
Query: 328 SLTTTATADGIEEC----RKLCGGHGYLCSSGLPELFAVYVPACTYEG 371
SL + E R+L GG+G L + + F P TYEG
Sbjct: 362 SLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEG 409
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 55 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 114
AI G+DEQ +WLP IGC+ TE HGS+ G+ T AT D+++
Sbjct: 122 AIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATR--SGDDWI----- 174
Query: 115 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK 174
LT +K W G V+ AVV+AR D G+ GF+V + PG T I K
Sbjct: 175 LTGTKMWITN-GSVADVAVVWAR-----TDEGIRGFVVP-------TDTPGFTANTIKSK 221
Query: 175 FGNGAYNTMDNGVLRFEHVRIPRNQML 201
A T + L + VR+P + L
Sbjct: 222 MSLRASVTSE---LVLDGVRLPDSARL 245
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
G+ +Q Q+W+ + IGC+A +E G+GS+ TTA + D +V++ +
Sbjct: 107 GSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAR--EEGDSWVLNGTKAWITN 164
Query: 120 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 179
W ++ VV+A Q+ G++ F+V + P PG+T+G K G A
Sbjct: 165 SWE------ASATVVFASTDRSRQNKGISAFLVPM-------PTPGLTLGKKEDKLGIRA 211
Query: 180 YNTMDNGVLRFEHVRIPRNQML 201
+T + L FE RIP+ +L
Sbjct: 212 SSTAN---LIFEDCRIPKENLL 230
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 134/327 (40%), Gaps = 51/327 (15%)
Query: 60 GTDEQHQKWL-PLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSS 118
GT+EQ +++L PL K + +A +E G+GS+ L+T A Q D +V L +
Sbjct: 101 GTEEQKERFLRPLTEK-PALAAFALSEPGNGSDAAALKTRAI--RQGDHYV-----LNGT 152
Query: 119 KWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG 178
K W G+ + VV+A + + + GV +V+ + PG I K G
Sbjct: 153 KMWISNGGE-AEWVVVFATVNPELRHKGVVALVVERGT-------PGFKAIKIHGKMGQR 204
Query: 179 AYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADA 238
A T + L FE V++P L EG+ ++ T+ R + A +
Sbjct: 205 ASGTYE---LVFEDVKVPVENRL------GEEGEGF------KIAMQTLNKTRIPVAAGS 249
Query: 239 SCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLK 298
RA+ A +Y+ R FG + +++ Q +L +L R +
Sbjct: 250 VGVARRALDEARKYAKEREAFGEP-------IANFQAIQFKLVDMLIGIETARMYTYYAA 302
Query: 299 WLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPE 358
WL LP AHA +A K+ + + + ++ GG+GY+ + +
Sbjct: 303 WLAD-----------QGLPHAHA-SAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEK 350
Query: 359 LFAVYVPACTYEGDNIVLLLQVARFLM 385
L YEG N + L +AR ++
Sbjct: 351 LLRDVKLNQIYEGTNEIQRLIIARHIL 377
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 55/279 (19%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
G D+Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+ K
Sbjct: 137 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN-----GQK 189
Query: 120 WWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFG 176
W GK + + ++ AR D + + GFIV+ + PGI IG + G
Sbjct: 190 MWITNGGKANWYFLL-ARSDPDPKAPANKAFTGFIVE-------ADTPGIQIGRKELNMG 241
Query: 177 NGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 236
+T G++ FE V++P+ +L + ++ G R + A
Sbjct: 242 QRCSDT--RGIV-FEDVKVPKENVL------------IGDGAGFKVAMGAFDKTRPVVAA 286
Query: 237 DASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA----------- 285
A RA+ AT+Y+ R+ FG E Q I + + + LA
Sbjct: 287 GAVGLAQRALDEATKYALERKTFGKLL--VEHQAISFMLAEMAMKVELARMSYQRAAWEV 344
Query: 286 ---------SAYAFRFVGEWLKWLYTDVTQRLQANDFST 315
++ A F G+ L TD Q L N F+T
Sbjct: 345 DSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNT 383
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 55/279 (19%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
G D+Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+ K
Sbjct: 112 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN-----GQK 164
Query: 120 WWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFG 176
W GK + + ++ AR D + + GFIV+ + PGI IG + G
Sbjct: 165 MWITNGGKANWYFLL-ARSDPDPKAPANKAFTGFIVE-------ADTPGIQIGRKELNMG 216
Query: 177 NGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 236
+T G++ FE V++P+ +L + ++ G R + A
Sbjct: 217 QRCSDT--RGIV-FEDVKVPKENVL------------IGDGAGFKVAMGAFDKTRPVVAA 261
Query: 237 DASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA----------- 285
A RA+ AT+Y+ R+ FG E Q I + + + LA
Sbjct: 262 GAVGLAQRALDEATKYALERKTFGKLL--VEHQAISFMLAEMAMKVELARMSYQRAAWEV 319
Query: 286 ---------SAYAFRFVGEWLKWLYTDVTQRLQANDFST 315
++ A F G+ L TD Q L N F+T
Sbjct: 320 DSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNT 358
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 130/333 (39%), Gaps = 58/333 (17%)
Query: 59 QGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSS 118
+G++E ++ LP E + YA +E GS+ + T A D D+++ L S
Sbjct: 114 RGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVAD--GDDWI-----LNGS 166
Query: 119 KWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG 178
K W GK ST V A D +G++ F+V H G T+G K G
Sbjct: 167 KCWITNGGK-STWYTVMAVTDPDKGANGISAFMV-------HKDDEGFTVGPKERKLGIK 218
Query: 179 AYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADA 238
T + L FE+ RIP ++++ + + T+ + R TI A A
Sbjct: 219 GSPTTE---LYFENCRIPGDRIIG------------EPGTGFKTALATLDHTRPTIGAQA 263
Query: 239 SCALSRAVCIATRYSAVRRQFG---SKNGGPETQVID--YKTQQNRLFPLLASAYAFRFV 293
A+ A Y+ R+QFG S N G + + D K + RL A+A A R
Sbjct: 264 VGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGE 323
Query: 294 GEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 353
G D + A C A + T D ++ L GG+GY
Sbjct: 324 G-----------------DLGFISAASKCFA--SDVAMEVTTDAVQ----LFGGYGYTQD 360
Query: 354 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386
+ + YEG N + + ++R L++
Sbjct: 361 FPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 53 VPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 112
VP I G G +Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+
Sbjct: 106 VPLIIG-GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN- 161
Query: 113 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIG 169
K W GK + + ++ AR D + GFIV+ + PG+ IG
Sbjct: 162 ----GQKMWITNGGKANWYFLL-ARSDPDPKAPASKAFTGFIVEADT-------PGVQIG 209
Query: 170 DIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 229
+ G +T G++ FE VR+P+ +L T EG ++ GT
Sbjct: 210 RKEINMGQRCSDT--RGIV-FEDVRVPKENVL------TGEGAGF------KIAMGTFDK 254
Query: 230 VRQTIVADASCALSRAVCIATRYSAVRRQFG 260
R + A A RA+ AT+Y+ R+ FG
Sbjct: 255 TRPPVAAGAVGLAQRALDEATKYALERKTFG 285
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
G+ EQ Q W+ + IGC+A +E G+GS+ TTA + D +V++ +
Sbjct: 103 GSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTAR--AEGDSWVLNGTKAWITN 160
Query: 120 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 179
W ++ AVV+A Q+ ++ F+V + P PG+T+G K G
Sbjct: 161 AWE------ASAAVVFASTDRALQNKSISAFLVPM-------PTPGLTLGKKEDKLGIRG 207
Query: 180 YNTMDNGVLRFEHVRIPRNQML 201
+T + L FE RIP++ +L
Sbjct: 208 SSTAN---LIFEDCRIPKDSIL 226
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 53 VPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 112
VP I G G +Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+
Sbjct: 96 VPLIIG-GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN- 151
Query: 113 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIG 169
K W GK + + ++ AR D + GFIV+ + PG+ IG
Sbjct: 152 ----GQKMWITNGGKANWYFLL-ARSDPDPKAPASKAFTGFIVE-------ADTPGVQIG 199
Query: 170 DIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 229
+ G +T G++ FE VR+P+ +L T EG ++ GT
Sbjct: 200 RKEINMGQRCSDT--RGIV-FEDVRVPKENVL------TGEGAGF------KIAMGTFDK 244
Query: 230 VRQTIVADASCALSRAVCIATRYSAVRRQFG 260
R + A A RA+ AT+Y+ R+ FG
Sbjct: 245 TRPPVAAGAVGLAQRALDEATKYALERKTFG 275
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 55/279 (19%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
G D+Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+ K
Sbjct: 112 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN-----GQK 164
Query: 120 WWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFG 176
W GK + + ++ AR D + + GFIV+ + PGI IG + G
Sbjct: 165 MWITNGGKANWYFLL-ARSDPDPKAPANKAFTGFIVE-------ADTPGIQIGRKELNMG 216
Query: 177 NGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 236
+T G++ FE V++P+ +L + ++ G R + A
Sbjct: 217 QRCSDT--RGIV-FEDVKVPKENVL------------IGDGAGFKVAMGAFDKERPVVAA 261
Query: 237 DASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA----------- 285
A RA+ AT+Y+ R+ FG E Q I + + + LA
Sbjct: 262 GAVGLAQRALDEATKYALERKTFGKLL--VEHQAISFMLAEMAMKVELARMSYQRAAWEV 319
Query: 286 ---------SAYAFRFVGEWLKWLYTDVTQRLQANDFST 315
++ A F G+ L TD Q L N F+T
Sbjct: 320 DSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNT 358
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 125/324 (38%), Gaps = 45/324 (13%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
GT Q +K+LP E + + TE GS+ + T+A P + TL SK
Sbjct: 125 GTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYY-----TLNGSK 179
Query: 120 WW--PGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGN 177
W GGL + T V+A+ T D ++ + GIT G K G
Sbjct: 180 LWISNGGLADIFT---VFAK--TPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGI 234
Query: 178 GAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 237
A NT + + F+ VR+P +L V + ++ +N R + A
Sbjct: 235 KASNTAE---VFFDGVRVPSENVLGEVGSGFKVAMHILNN------------GRFGMAAA 279
Query: 238 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWL 297
+ + + A ++ R QFG K + ++ Q + LA ++V E +
Sbjct: 280 LAGTMRGIIAKAVDHATNRTQFGEK-------IHNFGLIQEK----LARMVMLQYVTESM 328
Query: 298 KWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 357
++ + A DF EA K + A +EC ++ GG G++ G+
Sbjct: 329 AYMVS-ANMDQGATDFQI--EAAIS----KIFGSEAAWKVTDECIQIMGGMGFMKEPGVE 381
Query: 358 ELFAVYVPACTYEGDNIVLLLQVA 381
+ +EG N +L L VA
Sbjct: 382 RVLRDLRIFRIFEGTNDILRLFVA 405
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 125/324 (38%), Gaps = 45/324 (13%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
GT Q +K+LP E + + TE GS+ + T+A P + TL SK
Sbjct: 145 GTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYY-----TLNGSK 199
Query: 120 WW--PGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGN 177
W GGL + T V+A+ T D ++ + GIT G K G
Sbjct: 200 LWISNGGLADIFT---VFAK--TPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGI 254
Query: 178 GAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 237
A NT + + F+ VR+P +L V + ++ +N R + A
Sbjct: 255 KASNTAE---VFFDGVRVPSENVLGEVGSGFKVAMHILNN------------GRFGMAAA 299
Query: 238 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWL 297
+ + + A ++ R QFG K + ++ Q + LA ++V E +
Sbjct: 300 LAGTMRGIIAKAVDHATNRTQFGEK-------IHNFGLIQEK----LARMVMLQYVTESM 348
Query: 298 KWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 357
++ + A DF EA K + A +EC ++ GG G++ G+
Sbjct: 349 AYMVS-ANMDQGATDFQI--EAAIS----KIFGSEAAWKVTDECIQIMGGMGFMKEPGVE 401
Query: 358 ELFAVYVPACTYEGDNIVLLLQVA 381
+ +EG N +L L VA
Sbjct: 402 RVLRDLRIFRIFEGTNDILRLFVA 425
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 23/159 (14%)
Query: 43 AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFD 102
+F + + + +I G++EQ +WLP + IGC+ TE GSN G+ T A D
Sbjct: 105 SFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRD 164
Query: 103 PQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSP 162
+++ L +K W G ++ A V+A+ D G+ GF+V +
Sbjct: 165 --GSDWI-----LNGTKMWITN-GNLADVATVWAQ-----TDDGIRGFLVP-------TD 204
Query: 163 LPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQML 201
PG T +I K A T + L ++VR+P + L
Sbjct: 205 TPGFTANEIHRKLSLRASVTSE---LVLDNVRLPASAQL 240
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 134/367 (36%), Gaps = 105/367 (28%)
Query: 47 LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 106
LH + P I GT+EQ QKWLP E+I A TE G GS++ + TTA D D
Sbjct: 93 LHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKD--GD 150
Query: 107 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLI-----TDGQ----DHGVNGFIVQLRSL 157
++++ K ++A LI TD Q G++ +V+ +
Sbjct: 151 YYIVNGQ-------------KTFITNGIHADLIVVACKTDPQAKPPHRGISLLVVERDT- 196
Query: 158 EDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGK---YV 214
PG T G K G A +T + L F+ ++P +L EGK Y+
Sbjct: 197 ------PGFTRGRKLEKVGLHAQDTAE---LFFQDAKVPAYNLL------GEEGKGFYYL 241
Query: 215 QSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 274
+ ++ R + A A + +Y R FG + V +++
Sbjct: 242 MEKLQQE---------RLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKR-------VSEFQ 285
Query: 275 TQQNRLFPL-----LASAYAFRFVGEWL------------KWLYTDVTQRLQANDFSTLP 317
T Q RL + L + R + E + KW T++ +R+ A
Sbjct: 286 TVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAA------- 338
Query: 318 EAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLL 377
E +L GG+GY+ + + + Y G N ++
Sbjct: 339 ----------------------EAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMK 376
Query: 378 LQVARFL 384
+AR L
Sbjct: 377 TIIARQL 383
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 56 IKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 115
I G++EQ QK+LP K E++GC+ TE GS+ +ET A ++ + TL
Sbjct: 108 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSY-----TL 162
Query: 116 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF 175
+K W ++ VV+AR +D + GF+++ + G++ I KF
Sbjct: 163 NGTKTWITN-SPMADLFVVWARC----EDGCIRGFLLE-------KGMRGLSAPRIQGKF 210
Query: 176 GNGAYNTMDNGVLRFEHVRIPRNQML 201
A T G++ + V +P +L
Sbjct: 211 SLRASAT---GMIIMDGVEVPEENVL 233
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 56 IKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 115
I G++EQ QK+LP K E++GC+ TE GS+ +ET A ++ + TL
Sbjct: 106 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSY-----TL 160
Query: 116 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF 175
+K W ++ VV+AR +D + GF+++ + G++ I KF
Sbjct: 161 NGTKTWITN-SPMADLFVVWARC----EDGCIRGFLLE-------KGMRGLSAPRIQGKF 208
Query: 176 GNGAYNTMDNGVLRFEHVRIPRNQML 201
A T G++ + V +P +L
Sbjct: 209 SLRASAT---GMIIMDGVEVPEENVL 231
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 56 IKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 115
I G++EQ QK+LP K E++GC+ TE GS+ +ET A ++ + TL
Sbjct: 108 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSY-----TL 162
Query: 116 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF 175
+K W ++ VV+AR +D + GF+++ + G++ I KF
Sbjct: 163 NGTKTWITN-SPMADLFVVWARC----EDGCIRGFLLE-------KGMRGLSAPRIQGKF 210
Query: 176 GNGAYNTMDNGVLRFEHVRIPRNQML 201
A T G++ + V +P +L
Sbjct: 211 SLRASAT---GMIIMDGVEVPEENVL 233
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 30/205 (14%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
G++ +K++P E +G + TE GS+V + +TA + + D ++ L SK
Sbjct: 105 GSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTA--EDKGDHWL-----LNGSK 157
Query: 120 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 179
W + + YA G++ F+++ R+ PGI ++ K G+ A
Sbjct: 158 TWISNAAQADV-LIYYAYTDKAAGSRGLSAFVIEPRNF------PGIKTSNL-EKLGSHA 209
Query: 180 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADAS 239
T G L ++V++P+ +L + R +++G++ + R + A
Sbjct: 210 SPT---GELFLDNVKVPKENILGKPGDGAR------------IVFGSLNHTRLSAAAGGV 254
Query: 240 CALSRAVCIATRYSAVRRQFGSKNG 264
+ A +Y RRQFG G
Sbjct: 255 GLAQACLDAAIKYCNERRQFGKPIG 279
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 156/412 (37%), Gaps = 95/412 (23%)
Query: 4 RKELFK-NTLRKAA-------YAWKRIIELRLSEEEASMLRSSV-----DEPAFTDLHWG 50
+KELF + +RKAA Y + LS + S++ ++ A+ +H
Sbjct: 47 QKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIH-N 105
Query: 51 MFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVI 110
M I G +EQ K+ P ME Y TE G GS+ L T+A Q D ++
Sbjct: 106 MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSA--KKQGDHYI- 162
Query: 111 HSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGD 170
L SK + G G+ + VV R G G++ +V+ PG++ G
Sbjct: 163 ----LNGSKAFISGAGESDIY-VVMCRTGGPG-PKGISCIVVE-------KGTPGLSFGK 209
Query: 171 IGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYV 230
K G +N+ + FE +P +++ EG+ G ++ V
Sbjct: 210 KEKKVG---WNSQPTRAVIFEDCAVP------VANRIGSEGQ------------GFLIAV 248
Query: 231 R-----QTIVADASCALSRAVCIATR-YSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLL 284
R + +A S + A I TR + VR+QFG PL
Sbjct: 249 RGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGE--------------------PLA 288
Query: 285 ASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK---SLTTTATADGIEEC 341
++ Y L++ D+ RL A A A K +L + A +EC
Sbjct: 289 SNQY--------LQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDEC 340
Query: 342 RKLC-------GGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386
+C GG+GYL + + EG N V+ + ++R L++
Sbjct: 341 FAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQ 392
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
G+D Q +K+LP E IGC+ TE HGS+ + T A P +L+ SK
Sbjct: 116 GSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPG-------GYSLSGSK 168
Query: 120 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 153
W ++ VV+A+L DG+D + GFI++
Sbjct: 169 MWITN-SPIADVFVVWAKLDEDGRDE-IRGFILE 200
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
G+D Q +K+LP E IGC+ TE HGS+ + T A P +L+ SK
Sbjct: 115 GSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPG-------GYSLSGSK 167
Query: 120 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 153
W ++ VV+A+L DG+D + GFI++
Sbjct: 168 MWITN-SPIADVFVVWAKLDEDGRDE-IRGFILE 199
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
G+D Q +K+LP E IGC+ TE HGS+ + T A P +L+ SK
Sbjct: 119 GSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPG-------GYSLSGSK 171
Query: 120 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 153
W ++ VV+A+L DG+D + GFI++
Sbjct: 172 MWITN-SPIADVFVVWAKLDEDGRDE-IRGFILE 203
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 32/205 (15%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
GT+EQ +K+LP E I Y TE G GS+ +T AT ++ L K
Sbjct: 125 GTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYI-----LNGVK 179
Query: 120 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 179
W G V+A++ DG+ F+V+ + PG++ G K G A
Sbjct: 180 QWISNAGFAHLF-TVFAKV--DGEHF--TAFLVERDT-------PGLSFGPEEKKMGIKA 227
Query: 180 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADAS 239
+T + E V++P +L + + G + NV + R + A A
Sbjct: 228 SSTRQ---VILEDVKVPVENVLGEIGK----GHKIAFNV--------LNVGRYKLGAGAV 272
Query: 240 CALSRAVCIATRYSAVRRQFGSKNG 264
RA+ ++ +Y+ R QFG G
Sbjct: 273 GGAKRALELSAQYATQRVQFGRPIG 297
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 42/205 (20%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
G +EQ +K+LPL E + YA TE G GS+ G +TTA + + +V L K
Sbjct: 130 GNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYV-----LNGEK 184
Query: 120 WWPGGLGKVSTHA-----VVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK 174
W ++ A +VYA++ DG+ + FIV+ +D++ G++ K
Sbjct: 185 QW------ITNSAFADVFIVYAKI--DGEH--FSAFIVE----KDYA---GVSTSPEEKK 227
Query: 175 FGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 234
G +T L E +P+ +L + + G + N+ + R +
Sbjct: 228 XGIKCSSTR---TLILEDALVPKENLLGEIGK----GHIIAFNI--------LNIGRYKL 272
Query: 235 VADASCALSRAVCIATRYSAVRRQF 259
+ RAV I+ +Y+ R+QF
Sbjct: 273 GVGTVGSAKRAVEISAQYANQRQQF 297
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 32/203 (15%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
GT+EQ ++WLP E IG Y+ +E GS+ L AT P +VI+ SK
Sbjct: 112 GTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAAT--PTDGGYVIN-----GSK 164
Query: 120 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 179
W GK + ++AR T GV+ F+V + PG++ G K G A
Sbjct: 165 SWITHGGKADFY-TLFAR--TGEGSRGVSCFLVP-------ADQPGLSFGKPEEKMGLHA 214
Query: 180 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADAS 239
T +++ RI ++ ++ EG+ + Q+ + + R I A A+
Sbjct: 215 VPTTSA---FYDNARIDADR------RIGEEGQGL------QIAFSALDSGRLGIAAVAT 259
Query: 240 CALSRAVCIATRYSAVRRQFGSK 262
A+ A Y+ R FG K
Sbjct: 260 GLAQAALDEAVAYANERTAFGRK 282
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 34/220 (15%)
Query: 48 HWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 107
H + + + G + Q +K+LP E IG A +E GS+V ++ A + + +
Sbjct: 100 HSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKA--EKKGNH 157
Query: 108 FVIHSPTLTSSKWWPGGLGKVSTHAVVYAR--LITDGQDHGVNGFIVQLRSLEDHSPLPG 165
++ L +K+W G + +VYA+ L G+ FIV+ +PG
Sbjct: 158 YI-----LNGNKFWITN-GPDADVLIVYAKTDLAAVPASRGITAFIVE-------KGMPG 204
Query: 166 ITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYG 225
+ K G NT + L FE +IP +L +G YV L+ G
Sbjct: 205 FSTSKKLDKLGMRGSNTCE---LIFEDCKIPAANILGH----ENKGVYV-------LMSG 250
Query: 226 TMVYVRQTIVADASCALSRAVCIAT-RYSAVRRQFGSKNG 264
+ + + ++A L +AV T Y VR FG K G
Sbjct: 251 --LDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIG 288
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 27/162 (16%)
Query: 43 AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQG-LETTATF 101
+F + + + I G++EQ +++LP + E++GC+ TE GS+ G ++T A
Sbjct: 91 SFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRAR- 149
Query: 102 DPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHG--VNGFIVQLRSLED 159
+ D +V L +K W G ++ AV++A+ D G V GF+V +
Sbjct: 150 -REGDTWV-----LNGTKMWITN-GNLAHLAVIWAK------DEGGEVLGFLVPTDT--- 193
Query: 160 HSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQML 201
PG ++ K A T + L E VR+P + L
Sbjct: 194 ----PGFQAREVKRKMSLRASVTSE---LVLEEVRVPESLRL 228
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 119
G+ EQ + WL + +I + TE S+ AT + DE VI+ K
Sbjct: 125 GSQEQKEVWLEPLLEGDIRSAFCMTEPDVASS-DATNMAATAVVEGDEVVING-----RK 178
Query: 120 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 179
WW G+G +++ L TD H + L ++ PGIT+ M G
Sbjct: 179 WWSTGVGHPDCKVIIFMGL-TDPNAHRYARHSMVLVPMD----TPGITVER--MLPTMGF 231
Query: 180 YNTM-DNGVLRFEHVRIPRNQML 201
Y+ +GV+ F++VR+P + +
Sbjct: 232 YDEPGGHGVVSFDNVRLPADAFI 254
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 50 GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFV 109
G+ +P I G+D ++++ ++IG TE G GS+V L T A + D +V
Sbjct: 117 GIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAV--REGDTYV 174
Query: 110 IHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGF-IVQLRSLEDHSPLPGITI 168
++ K + V A +T G G+ V L ++ +S PG
Sbjct: 175 VNGA-------------KTFITSGVRADFVTTAVRTGGPGYGGVSLLVIDKNS--PGF-- 217
Query: 169 GDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQML 201
++ + + D L F VR+P + ++
Sbjct: 218 -EVSRRLDKMGWRCSDTAELSFVDVRVPADNLV 249
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSS 118
G++EQ ++WL + I C+ TE S+ +E + D D +VI+
Sbjct: 131 GSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRD--EDSYVIN-----GK 183
Query: 119 KWWPGGLG 126
KWW G G
Sbjct: 184 KWWSSGAG 191
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 286 SAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLC 345
+A FR W + D + L A F+ + C G+ + E ++
Sbjct: 352 TALLFRLARAWDR--RADAKEALWARLFTPAAKFVICKRGMPF---------VAEAMEVL 400
Query: 346 GGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386
GG GY S LP L+ +EG ++ L V R L K
Sbjct: 401 GGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNK 441
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 60 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTA 99
G++ Q + +LP E +G + TE G GS+ L+T A
Sbjct: 104 GSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKA 143
>pdb|1EV1|1 Chain 1, Echovirus 1
Length = 281
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 163 LPGITIGDIGMKFGNG----------AYNTMDN-GVLRFEHVRIPRNQMLMRVSQVTREG 211
+P I+IG+ F +G + T++N G L F HV P + V+++ +
Sbjct: 183 IPFISIGNAYSNFYDGWSHFSQAGVYGFTTLNNMGQLFFRHVNKPNPAAITSVARIYFKP 242
Query: 212 KYVQSNVPR 220
K+V++ VPR
Sbjct: 243 KHVRAWVPR 251
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 347 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGR 406
G Y C SGLPE A + C G +++ + + R + NM VG + GR
Sbjct: 76 GDCYYCVSGLPEARADHAHCCVEMGMDMIEAISLVREMTGVNV-----NMRVG--IHSGR 128
Query: 407 AEQLMQCHCGVQKAEDW 423
HCGV W
Sbjct: 129 V------HCGVLGLRKW 139
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 347 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGR 406
G Y C SGLPE A + C G +++ + + R + NM VG + GR
Sbjct: 84 GDCYYCVSGLPEARADHAHCCVEMGMDMIEAISLVREMTGVNV-----NMRVG--IHSGR 136
Query: 407 AEQLMQCHCGVQKAEDW 423
HCGV W
Sbjct: 137 V------HCGVLGLRKW 147
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 347 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGR 406
G Y C SGLPE A + C G +++ + + R + NM VG + GR
Sbjct: 84 GDCYYCVSGLPEARADHAHCCVEMGMDMIEAISLVREMTGVNV-----NMRVG--IHSGR 136
Query: 407 AEQLMQCHCGVQKAEDW 423
HCGV W
Sbjct: 137 V------HCGVLGLRKW 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,661,736
Number of Sequences: 62578
Number of extensions: 639055
Number of successful extensions: 1186
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 44
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)