Query 008966
Match_columns 547
No_of_seqs 287 out of 1997
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 18:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0136 Acyl-CoA oxidase [Lipi 100.0 7E-110 2E-114 855.2 45.5 537 1-546 62-608 (670)
2 PLN02443 acyl-coenzyme A oxida 100.0 2E-103 4E-108 857.5 59.4 546 1-546 55-600 (664)
3 PTZ00460 acyl-CoA dehydrogenas 100.0 1.4E-98 3E-103 818.1 56.3 526 1-546 53-586 (646)
4 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 1.7E-99 4E-104 760.3 43.0 536 2-546 70-627 (661)
5 PLN02636 acyl-coenzyme A oxida 100.0 2.7E-97 6E-102 813.1 56.3 526 13-546 95-652 (686)
6 PLN02312 acyl-CoA oxidase 100.0 4.3E-97 9E-102 809.5 55.2 530 1-546 97-648 (680)
7 cd01150 AXO Peroxisomal acyl-C 100.0 6E-95 1.3E-99 791.3 55.7 510 1-546 52-575 (610)
8 KOG0139 Short-chain acyl-CoA d 100.0 9.5E-60 2.1E-64 450.6 16.5 311 14-374 69-398 (398)
9 KOG0140 Medium-chain acyl-CoA 100.0 1.9E-57 4.1E-62 427.3 18.8 326 14-389 60-407 (408)
10 KOG0141 Isovaleryl-CoA dehydro 100.0 1.5E-56 3.3E-61 421.4 20.2 323 15-386 76-419 (421)
11 PRK09463 fadE acyl-CoA dehydro 100.0 3.6E-48 7.8E-53 425.8 42.7 454 15-518 111-622 (777)
12 TIGR03203 pimD_small pimeloyl- 100.0 9.8E-49 2.1E-53 407.8 28.7 319 14-382 38-374 (378)
13 cd01162 IBD Isobutyryl-CoA deh 100.0 3.6E-48 7.9E-53 404.3 31.1 329 8-386 27-374 (375)
14 cd01151 GCD Glutaryl-CoA dehyd 100.0 4.3E-48 9.4E-53 405.1 31.4 320 14-386 45-382 (386)
15 cd01161 VLCAD Very long chain 100.0 6.3E-48 1.4E-52 406.7 31.9 329 14-387 57-407 (409)
16 cd01160 LCAD Long chain acyl-C 100.0 5.3E-48 1.1E-52 402.9 30.6 323 13-384 30-371 (372)
17 PRK13026 acyl-CoA dehydrogenas 100.0 3.4E-47 7.3E-52 416.5 38.3 333 14-394 109-488 (774)
18 PRK12341 putative acyl-CoA deh 100.0 1.3E-47 2.7E-52 400.9 31.3 329 8-387 32-379 (381)
19 PRK03354 crotonobetainyl-CoA d 100.0 1.7E-47 3.6E-52 399.7 30.4 326 13-388 37-379 (380)
20 cd01157 MCAD Medium chain acyl 100.0 3.3E-47 7.1E-52 397.7 30.2 325 13-386 32-377 (378)
21 PLN02519 isovaleryl-CoA dehydr 100.0 6.7E-47 1.4E-51 398.1 32.3 320 18-386 64-402 (404)
22 KOG0137 Very-long-chain acyl-C 100.0 2.6E-46 5.7E-51 380.6 35.1 327 15-386 111-460 (634)
23 PTZ00461 isovaleryl-CoA dehydr 100.0 3.4E-47 7.3E-52 401.1 29.8 322 13-387 68-408 (410)
24 PLN02526 acyl-coenzyme A oxida 100.0 7.2E-47 1.6E-51 398.4 30.9 321 14-387 61-399 (412)
25 cd01156 IVD Isovaleryl-CoA deh 100.0 8E-47 1.7E-51 394.5 30.4 324 14-386 34-376 (376)
26 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 3E-46 6.6E-51 389.4 29.8 320 13-383 32-370 (372)
27 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 6.8E-46 1.5E-50 389.5 30.8 325 15-386 43-394 (394)
28 cd01158 SCAD_SBCAD Short chain 100.0 8.1E-46 1.8E-50 386.6 30.3 324 14-386 31-373 (373)
29 KOG0138 Glutaryl-CoA dehydroge 100.0 1.2E-46 2.5E-51 353.4 20.9 295 42-387 133-427 (432)
30 cd01154 AidB Proteins involved 100.0 1.2E-44 2.6E-49 381.8 33.6 329 16-385 68-417 (418)
31 PTZ00456 acyl-CoA dehydrogenas 100.0 1.1E-43 2.4E-48 386.4 41.1 342 16-385 102-479 (622)
32 COG1960 CaiA Acyl-CoA dehydrog 100.0 3.9E-45 8.5E-50 384.0 28.5 325 15-388 41-390 (393)
33 TIGR03204 pimC_large pimeloyl- 100.0 1E-44 2.2E-49 380.1 29.4 319 17-386 44-394 (395)
34 PRK11561 isovaleryl CoA dehydr 100.0 8.4E-44 1.8E-48 379.2 31.4 295 46-386 134-441 (538)
35 cd00567 ACAD Acyl-CoA dehydrog 100.0 2.1E-43 4.6E-48 361.7 30.9 284 51-382 43-327 (327)
36 cd01153 ACAD_fadE5 Putative ac 100.0 1.6E-43 3.4E-48 372.8 30.6 337 16-382 39-404 (407)
37 PLN02876 acyl-CoA dehydrogenas 100.0 2.7E-43 5.8E-48 399.7 30.7 290 51-387 524-819 (822)
38 cd01152 ACAD_fadE6_17_26 Putat 100.0 1E-42 2.2E-47 363.9 26.4 319 13-386 35-380 (380)
39 cd01163 DszC Dibenzothiophene 100.0 4.7E-41 1E-45 351.0 28.7 338 7-386 16-373 (377)
40 PTZ00457 acyl-CoA dehydrogenas 100.0 3.5E-35 7.6E-40 311.0 43.3 283 13-377 50-362 (520)
41 cd01159 NcnH Naphthocyclinone 100.0 2.4E-36 5.1E-41 314.7 25.3 333 10-386 19-370 (370)
42 KOG1469 Predicted acyl-CoA deh 100.0 1.2E-36 2.6E-41 282.0 20.4 289 54-388 90-384 (392)
43 PF01756 ACOX: Acyl-CoA oxidas 99.9 1.1E-23 2.4E-28 197.4 15.1 125 422-546 1-129 (187)
44 TIGR02309 HpaB-1 4-hydroxyphen 99.9 1.7E-20 3.8E-25 198.6 23.1 249 56-352 118-391 (477)
45 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 2.5E-20 5.5E-25 168.5 17.5 145 222-385 6-150 (150)
46 PF02770 Acyl-CoA_dh_M: Acyl-C 99.4 1.6E-13 3.5E-18 99.9 5.8 51 80-138 1-51 (52)
47 PF08028 Acyl-CoA_dh_2: Acyl-C 99.4 2.3E-12 5E-17 114.2 12.5 133 232-373 1-133 (134)
48 PF14749 Acyl-CoA_ox_N: Acyl-c 99.2 6.6E-11 1.4E-15 103.4 7.4 78 1-78 40-125 (125)
49 COG2368 Aromatic ring hydroxyl 98.7 3.5E-06 7.7E-11 86.8 21.7 252 59-354 125-401 (493)
50 TIGR02310 HpaB-2 4-hydroxyphen 98.6 3.6E-06 7.9E-11 89.7 21.3 240 64-347 137-398 (519)
51 PF11794 HpaB_N: 4-hydroxyphen 97.6 0.00057 1.2E-08 66.8 11.2 123 64-201 124-263 (264)
52 PF02771 Acyl-CoA_dh_N: Acyl-C 97.6 3E-05 6.5E-10 66.1 1.8 64 13-76 31-113 (113)
53 PF03241 HpaB: 4-hydroxyphenyl 86.1 4.7 0.0001 38.2 9.0 75 270-351 44-118 (205)
54 PTZ00457 acyl-CoA dehydrogenas 72.6 33 0.00071 37.5 11.0 70 269-350 432-501 (520)
55 KOG0137 Very-long-chain acyl-C 47.1 2.8E+02 0.006 30.5 12.0 68 269-347 536-603 (634)
56 PF02607 B12-binding_2: B12 bi 30.7 1.4E+02 0.003 22.9 5.3 34 511-544 46-79 (79)
57 PF12584 TRAPPC10: Trafficking 27.0 1.4E+02 0.003 26.5 5.3 30 142-173 86-115 (147)
58 PF02337 Gag_p10: Retroviral G 26.8 1.5E+02 0.0033 24.0 4.9 39 507-545 34-72 (90)
59 PF10799 YliH: Biofilm formati 24.0 50 0.0011 27.6 1.7 28 519-546 30-57 (127)
60 COG1902 NemA NADH:flavin oxido 22.2 50 0.0011 34.3 1.7 65 330-399 154-220 (363)
No 1
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=7e-110 Score=855.18 Aligned_cols=537 Identities=52% Similarity=0.808 Sum_probs=505.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCCCHHH-----HhhhhhhcCCcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 1 MLSRKELFKNTLRKAAYAWKRIIELRLSEEE-----ASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
+|||+|+|+...++..+.++.+.++.+..+. +.....+...+.|+.+|++||+++|...||+||.++|+++..+.
T Consensus 62 ~~sr~E~~~~~~Rk~~~~~~~~~el~~~~d~~~~~~~~~~~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~ 141 (670)
T KOG0136|consen 62 FMSREERYENTVRKLARLTKKMRELQDNTDNENKLLGLLARVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNM 141 (670)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhHHHhhccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccc
Confidence 6899999999999999999999998876221 22223344569999999999999999999999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeec
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 155 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r 155 (547)
+|+||||+||+|||||+++++|||+|||.+++|||||||.++.|||+++||+.|+|++|+|+++.+|+++|+|+|+||+|
T Consensus 142 ~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lR 221 (670)
T KOG0136|consen 142 EIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLR 221 (670)
T ss_pred eEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCccccccchheeeeeeeecccccccceeEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966 156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 235 (547)
Q Consensus 156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~ 235 (547)
|+++|.++|||+|+|+++|+| ++|+|||++.|||||||++|||+++++|.++|.|+.+..++ +.|++|.+.|..++
T Consensus 222 d~~th~pL~Gi~iGDIG~Kmg---~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~-l~Y~tMv~vRs~mv 297 (670)
T KOG0136|consen 222 DEDTHKPLPGITVGDIGPKMG---FNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPK-LGYGTMVYVRSLMV 297 (670)
T ss_pred CccccCCCCCCeecCCCcccc---ccCCccceeeecceeechHhhhhhhheecCCCccccCCccc-cceeeeEEEeehhH
Confidence 999999999999999999999 99999999999999999999999999999999999988887 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966 236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 315 (547)
Q Consensus 236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (547)
....-.+.+|++||+||+.+|+|+...++.+|++|+|||+||+||+|.+|.+||++++..++.++|.+..+++..++.+.
T Consensus 298 ~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~ 377 (670)
T KOG0136|consen 298 MDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSR 377 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHHHHhcCCC
Q 008966 316 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGN 395 (547)
Q Consensus 316 ~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~ 395 (547)
++|+|++++++|+.+||.+.+.++.||++||||||+..|+++.+|..+.+.|||||+|.||++|+||+|+|.+.+..+|+
T Consensus 378 LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~~~~sgk 457 (670)
T KOG0136|consen 378 LPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYAQVLSGK 457 (670)
T ss_pred chHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccchhHHhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHh----hhcCChHhHHHHHHHHHHHHHHH
Q 008966 396 MPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNL----SKFTNQEEGFAELAADLVEAAVA 471 (547)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l----~~~~~~~~~~n~~~~~~~~la~a 471 (547)
++.++++|+....... .......+|.+ + ++++|+++|.+++..+++++ +.+.+.+.+||.++++++++|++
T Consensus 458 ~l~~~v~yl~~~~~~~---~~~~~~~~~~~-e-~~~a~e~~A~r~~~~a~~~l~~~~~~~~~~e~A~N~~sv~L~~Aa~~ 532 (670)
T KOG0136|consen 458 SLSPTVAYLAASALKP---QLISGAGDWLN-E-YVEAFEHRAARQVWIAAENLLKLMSSGESQEVAWNLTSVELTRAARA 532 (670)
T ss_pred CCCCchhhhhhcccCc---cccccccchhH-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 8888999997543211 11123467766 5 99999999999999998885 45678899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhhhhhHHhc-CCCCHHHHHHHHHHHHHHHHhhcCCC
Q 008966 472 HCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVST-GCITAKQASLANEQLRSLYSQVFTCV 546 (547)
Q Consensus 472 ~~~~~~~~~f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~~~~fl~~-~~ls~~~~~~l~~~i~~l~~~Lrp~~ 546 (547)
|+++++++.|++.|.+...++++++||++||.||+++.|.+++|+|+.. +|+|+.|++.++.++++++++|||+|
T Consensus 533 H~~~~vvk~f~~kv~~~~~~~~vk~vL~~L~~Ly~~y~il~~~g~fl~~~~~mt~~q~~~v~~~l~~lL~~iRpnA 608 (670)
T KOG0136|consen 533 HCRLFVVKTFLEKVEKHISDPAVKEVLKNLLELYLLYEILKNSGDFLRFNNFMTDTQLDQVRDQLYELLTKIRPNA 608 (670)
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcCe
Confidence 9999999999999997567889999999999999999999999999998 99999999999999999999999997
No 2
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.9e-103 Score=857.54 Aligned_cols=546 Identities=88% Similarity=1.371 Sum_probs=501.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhhhhcCCcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccceeeE
Q 008966 1 MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGC 80 (547)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~~g~ 80 (547)
|+||+|+|++.+++..++.+.+.++||..++.......++.+.++.+|+++|+++|..+||++|+++|+|++.+|+++||
T Consensus 55 ~~sr~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~ 134 (664)
T PLN02443 55 RLSRKELFKNTLRKAAHAWKRIIELRLTEEEAGKLRSFVDEPGYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGC 134 (664)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHhcccceeeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheE
Confidence 58999999999999999999999999987665545556677788999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeecCCCCC
Q 008966 81 YAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDH 160 (547)
Q Consensus 81 ~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r~~~~~ 160 (547)
||+|||+||||+.+++|||+||+++++|+|||||++|+||||+|++..||+++|+||++++++++|+++||||+||.++|
T Consensus 135 fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~ 214 (664)
T PLN02443 135 YAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDH 214 (664)
T ss_pred EEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcC
Confidence 99999999999999999999999999999999999999999999668999999999998888889999999999999999
Q ss_pred CCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHHHHHHH
Q 008966 161 SPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASC 240 (547)
Q Consensus 161 ~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~~~g 240 (547)
.+.|||+++++++|+|..+++++|||+|.|||||||++|||+++++|+++|.++.+....++.+++|..+|+.+++.++|
T Consensus 215 ~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g 294 (664)
T PLN02443 215 SPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADAST 294 (664)
T ss_pred CCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999993334569999999999999999999999999999999876554337899999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008966 241 ALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAH 320 (547)
Q Consensus 241 ~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (547)
++++|+++|++|+.+|+|||.+.+.+|.|+++||++|++|+|+++.+++++++.+++.+.+++..+.....+.+..+++|
T Consensus 295 ~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h 374 (664)
T PLN02443 295 ALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAH 374 (664)
T ss_pred HHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHH
Confidence 99999999999999999999977667999999999999999999999999999999999998765544444544556789
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 008966 321 ACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGT 400 (547)
Q Consensus 321 ~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~ 400 (547)
..++++|++++|.+.+++++|+|+|||+||+.+++++++++|+++.+|+||+|+|+++++||++|+.+++..+++.+.++
T Consensus 375 ~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~ 454 (664)
T PLN02443 375 ACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGT 454 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHHHHHHhhcCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred cccccchhHHhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 401 TTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK 480 (547)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~~~~la~a~~~~~~~~~ 480 (547)
++||.+............+..+|.|+++++++|++|+.+++..++++++++.+..++||+++++++++|+||+++++++.
T Consensus 455 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a~n~~~~~~~~~a~ah~~~~~~~~ 534 (664)
T PLN02443 455 TAYMGRVQHLLQCRCGVQTAEDWLNPSVVLEAFEARAARMAVTCAQNLSKFENQEAGFQELSADLVEAAVAHCQLIVVSK 534 (664)
T ss_pred HHHHhhhhhhhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998765554444444556789999999999999999999999999987777889999999999999999999999999
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhhhhhHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 008966 481 FIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 546 (547)
Q Consensus 481 f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l~~~Lrp~~ 546 (547)
|++.|++..+++++++||+.||.||+|+.|+++.|||+++||||++|++.|+..|.+||.+||||+
T Consensus 535 f~~~~~~~~~~~~~~~~L~~l~~L~~l~~i~~~~~~fl~~~~ls~~~~~~i~~~i~~l~~~lrp~a 600 (664)
T PLN02443 535 FIEKLQQDIPGKGVKKQLQNLCYIYALYLLHKHLGDFLSTGCITPKQASLANDQLRSLYSQVRPNA 600 (664)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 999998634588999999999999999999999999999999999999999999999999999986
No 3
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-98 Score=818.11 Aligned_cols=526 Identities=34% Similarity=0.564 Sum_probs=471.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhhhhc--CCcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcccee
Q 008966 1 MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSV--DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 78 (547)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~~ 78 (547)
+|||+|+|+.+.++..++.+.+. .. +.......++ +.+.++++|+++|+++|..+||++|+++|||++.+|+++
T Consensus 53 ~lsr~e~~~~~~~k~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~i 128 (646)
T PTZ00460 53 NWSRQDQILLNAEKTREAHKHLN---LA-NPNYYTPNLLCPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIV 128 (646)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcC---ch-hhhHHhhhhcccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChh
Confidence 58999999999999999998743 11 1111112233 556789999999999999999999999999999999999
Q ss_pred eEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeecCCC
Q 008966 79 GCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLE 158 (547)
Q Consensus 79 g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r~~~ 158 (547)
||||+|||+||||+.+++|||++|+++|+|+|||||++|+||||+|++..||+++|+||+.++++++|+++|+||+||.+
T Consensus 129 g~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~ 208 (646)
T PTZ00460 129 GCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKE 208 (646)
T ss_pred eeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccC
Confidence 99999999999999999999999988999999999999999999986789999999999988778899999999999999
Q ss_pred CCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHHHHH
Q 008966 159 DHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADA 238 (547)
Q Consensus 159 ~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~~ 238 (547)
+|.+.|||+++++++|+| +++++|+++.|||||||++||||+|++|+++|.|..++..+ +.+..|..+|+.+++.+
T Consensus 209 ~~~~~pGV~vg~~~~k~G---~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~-~~~~~l~~~R~~iaa~~ 284 (646)
T PTZ00460 209 THKPLQGVEVGDIGPKMG---YAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQGNPK-VSYASMMYMRNLIIDQY 284 (646)
T ss_pred CCCCCCCeEEeccccccC---cCCCCceEEEeceEEECHHHhCCcccccCCCCccccCCcHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999887665455 78899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008966 239 SCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPE 318 (547)
Q Consensus 239 ~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (547)
+|++++|+++|++|+++|+|||.+ +++|.||++||++|++|+|+++.+|+++++.+++.+++++........+....++
T Consensus 285 ~g~a~~Al~iAvrYa~~R~QFg~~-~~~E~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~ 363 (646)
T PTZ00460 285 PRFAAQALTVAIRYSIYRQQFTND-NKQENSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQL 363 (646)
T ss_pred HHHHHHHHHHHHHHHHccccCCCC-CCCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhh
Confidence 999999999999999999999974 5569999999999999999999999999999999999987654443344444567
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHHHHhcCC-CCC
Q 008966 319 AHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYG-NMP 397 (547)
Q Consensus 319 ~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~-~~~ 397 (547)
.|..++++|++++|.+.+++++|+|+|||+||+.+++++++|||+++.+|+||+|+|+++++||.+++.+++..++ +.+
T Consensus 364 ~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~~~~~~~~~~~~~ 443 (646)
T PTZ00460 364 THAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQLQHAVQKPEKV 443 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887555 345
Q ss_pred ccccccccchhHHhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhh----hcCChHhHHHH-HHHHHHHHHHHH
Q 008966 398 VGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLS----KFTNQEEGFAE-LAADLVEAAVAH 472 (547)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l~----~~~~~~~~~n~-~~~~~~~la~a~ 472 (547)
.++++||.+.... ..++.+.+++.++|++|+.+++..++++++ ++++.+++||. ++++++++|+||
T Consensus 444 ~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~awn~~~~~~l~~~a~ah 514 (646)
T PTZ00460 444 PEYFNFLSHITEK---------LADQTTIESLGQLLGLNCTILTIYAAKKIMDHINTGKDFQQSWDTKSGIALASAASRF 514 (646)
T ss_pred hhHHHHHHHhhhh---------ccccCChHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHH
Confidence 5578888654311 134566789999999999999888877764 35677789999 789999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhhhhhHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 008966 473 CQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 546 (547)
Q Consensus 473 ~~~~~~~~f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l~~~Lrp~~ 546 (547)
+++++++.|++.|+. . ++++++||++||.||+|+.|++++|+|+++||||++|++.|++.|.+||.+||||+
T Consensus 515 ~~~~~~~~f~~~i~~-~-~~~~~~vL~~l~~Ly~l~~i~~~~g~fl~~~~l~~~~~~~i~~~i~~l~~~lrp~a 586 (646)
T PTZ00460 515 IEYFNYLCFLDTINN-A-NKSTKEILTQLADLYGITMLLNNPQGLIEKGQITVEQIKLLQETREQLYPIIKPNA 586 (646)
T ss_pred HHHHHHHHHHHHHhc-c-CHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 999999999999985 3 88999999999999999999999999999999999999999999999999999986
No 4
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-99 Score=760.31 Aligned_cols=536 Identities=33% Similarity=0.514 Sum_probs=464.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHcCCC----HHH---Hhhh---hhhcCC--cchhHhhhhhhHHHHhcCCCHHHHHhHh
Q 008966 2 LSRKELFKNTLRKAAYAWKRIIELRLS----EEE---ASML---RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWL 69 (547)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~---~~~~---~~~~~~--~~~~~~h~~l~~~~i~~~Gt~~q~~~~l 69 (547)
++.||+.+.++.+..++.+...--+|. ++. .... .++.+. +.-+++|+.+|+.++..+||+.+++ |+
T Consensus 70 l~me~qRel~~~r~~~l~~~gv~~~~~~~~~~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi 148 (661)
T KOG0135|consen 70 LSMEEQRELCMKRIKRLVELGVFKFWLVEDGPEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YI 148 (661)
T ss_pred cCHHHHHHHHHHHHHHHHHhccCcceeecCchHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HH
Confidence 466777777776655555432111233 221 1111 234454 4568999999999999999999887 99
Q ss_pred HHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEE
Q 008966 70 PLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNG 149 (547)
Q Consensus 70 ~~i~~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~ 149 (547)
.++.+.+++|||||||++||||+.+|+|||||||.+++||||||+.++.|+||||++.+|+|++|||++..++.++|+|.
T Consensus 149 ~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~ 228 (661)
T KOG0135|consen 149 QKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHG 228 (661)
T ss_pred hhhhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCch---hh-HHHH
Q 008966 150 FIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVP---RQ-LLYG 225 (547)
Q Consensus 150 flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~---~~-~~~~ 225 (547)
|||||||++|+...|||+|+|++.|.| ++|+|||.+.|+|||||++|+|.++++|+++|+|+++-.+ ++ .+++
T Consensus 229 FiiqIRdpkT~~t~PgV~igD~G~K~G---lnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~ 305 (661)
T KOG0135|consen 229 FIIQIRDPKTLQTLPGVRIGDCGHKIG---LNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLG 305 (661)
T ss_pred EEEEeecccccCCCCCceecccccccc---cccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhc
Confidence 999999999999999999999999999 9999999999999999999999999999999999985322 21 5688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 226 TMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT 305 (547)
Q Consensus 226 ~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~ 305 (547)
.+..+|+.+++.++|.++-+++||+||+..|+|||++.+.+|.||+|||++|+||.|++|.+|+++++..++...|.+..
T Consensus 306 ~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~ 385 (661)
T KOG0135|consen 306 SLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERT 385 (661)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999988889999999999999999999999999999999999999888
Q ss_pred HhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHH
Q 008966 306 QRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 385 (547)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 385 (547)
.....+. ..+++|++++++|+++||...+++++||++||||||..+|+++.+..|.++.+||||||+||+||+++.||
T Consensus 386 ~~~~~~~--n~keiHALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL 463 (661)
T KOG0135|consen 386 PRTNEGV--NSKEIHALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALL 463 (661)
T ss_pred hhhcccc--chhHHHHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHH
Confidence 7655443 25899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccccccccchhHHhhhcCCc-cccCCCCCHHHHHHHHHHHHHH-HHHHHHH---HhhhcCChHhHHHH
Q 008966 386 KTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGV-QKAEDWLNPSAILEAFEARAIR-MSVACAQ---NLSKFTNQEEGFAE 460 (547)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~r~~~-~~~~~~~---~l~~~~~~~~~~n~ 460 (547)
+++.. +....|.++..|++...+........ ...+.+.++++++ ++.|..++ ++...+. +++.+.+++++||.
T Consensus 464 ~~y~~-~~~e~p~~~~~~ln~~~s~~~~~~~s~~~~d~l~~~~f~~-~~~~l~~~lLl~t~a~~~~~l~~g~~~fea~n~ 541 (661)
T KOG0135|consen 464 AQYVS-QKKETPLSFVGFLNEYPSSPDPVLASQLVSDTLRSSQFQL-CYFWLRCHLLLETVASRERQLQSGLSSFEARNK 541 (661)
T ss_pred HHHHH-hhccCCchHHHHHhhccccCCccccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 99988 44555665666665443332221221 2344555677777 55555555 4443333 35667888999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhhhhhHHhcCCCCHHHHHHHHHHHHHHH
Q 008966 461 LAADLVE-AAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLY 539 (547)
Q Consensus 461 ~~~~~~~-la~a~~~~~~~~~f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l~ 539 (547)
++++..+ +|.||+|..+++.|++.+.+ ++++++|.||+.+++||+|+.|++|++.|+..||++++++..+++.+..+|
T Consensus 542 ~q~h~~~~La~a~~E~~il~~~l~h~~k-~~~~s~k~vL~l~~dlyal~lLek~~~ll~~~gy~s~~~a~~vr~~~l~lc 620 (661)
T KOG0135|consen 542 CQVHQLRELALAFTEHTILQRFLDHVHK-LPDPSVKAVLGLVRDLYALWLLEKHPALLYITGYVSGEFAGDVREKVLKLC 620 (661)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHHhHHHHhhccccccchHHHHHHHHHHHH
Confidence 9877655 99999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCC
Q 008966 540 SQVFTCV 546 (547)
Q Consensus 540 ~~Lrp~~ 546 (547)
.+|||++
T Consensus 621 ~elr~~A 627 (661)
T KOG0135|consen 621 AELRPVA 627 (661)
T ss_pred HhccHHH
Confidence 9999985
No 5
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.7e-97 Score=813.06 Aligned_cols=526 Identities=33% Similarity=0.520 Sum_probs=460.0
Q ss_pred HHH-HHHHHHHHHcCCC--------HHHHhhhhhhc---C--CcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcccee
Q 008966 13 RKA-AYAWKRIIELRLS--------EEEASMLRSSV---D--EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 78 (547)
Q Consensus 13 ~~~-~~~~~~~~~~g~~--------~~~~~~~~~~~---~--~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~~ 78 (547)
..+ .++++.+.++|+. +.+.......+ + .+.++++|++||+++|..+||++||++|||++.+|+++
T Consensus 95 e~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~i 174 (686)
T PLN02636 95 ELCMRQLTGLVREAGIRPMKYLVEDPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYP 174 (686)
T ss_pred hhHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChh
Confidence 344 6778888888872 22222221112 2 24568899999999999999999999999999999999
Q ss_pred eEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccC------CCCcceEEEEE
Q 008966 79 GCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD------GQDHGVNGFIV 152 (547)
Q Consensus 79 g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~------~~~~g~~~flV 152 (547)
||||+|||+||||+++++|||+||+++|+|||||||++|+||||+|++.+||+++|+||++++ ++++|+++|||
T Consensus 175 g~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlV 254 (686)
T PLN02636 175 GCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIV 254 (686)
T ss_pred hhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEE
Confidence 999999999999999999999999988999999999999999999954569999999999743 24689999999
Q ss_pred eecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccC--chh--hHHHHHHH
Q 008966 153 QLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSN--VPR--QLLYGTMV 228 (547)
Q Consensus 153 ~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~--~~~--~~~~~~l~ 228 (547)
|+||.++|.+.|||+|+++++|+| +++++|+.|.|||||||++||||++++|+++|.|.++. ..+ .++++.|.
T Consensus 255 p~r~~~~~~~~PGV~v~~~~~K~G---~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~ 331 (686)
T PLN02636 255 PIRDMKTHQVLPGVEIRDCGHKVG---LNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELV 331 (686)
T ss_pred ecCccccCCCCCCeEeccCCCccC---CCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHH
Confidence 999999999999999999999999 99999999999999999999999999999999998831 111 26789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008966 229 YVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRL 308 (547)
Q Consensus 229 ~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 308 (547)
.+|+.+++.++|++++|+++|++|+.+|+|||. ++++|+||++||++|++|+|+++.+|+++++...+...+.+..+
T Consensus 332 ~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~-p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~-- 408 (686)
T PLN02636 332 GGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGP-PKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKK-- 408 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCC-CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999997 45679999999999999999999999999888777776654432
Q ss_pred hcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHH
Q 008966 309 QANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 388 (547)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 388 (547)
.++.+...++|.+++++|+++||.+.+++++|+|+|||+||+.+++++++|||+++.+|+||+|+|+++++||++|+.+
T Consensus 409 -~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~ 487 (686)
T PLN02636 409 -THDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQY 487 (686)
T ss_pred -cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHHH
Confidence 2233334678999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCccccccccchhHHh-hhcCC----ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh---cCChHhHHHH
Q 008966 389 SQLGYGNMPVGTTTYMGRAEQLM-QCHCG----VQKAEDWLNPSAILEAFEARAIRMSVACAQNLSK---FTNQEEGFAE 460 (547)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l~~---~~~~~~~~n~ 460 (547)
++..++..+.+++.||.+..... ..+.. ..+.++|.|+++++++|++|+.+++..+++++++ +.+.+++||+
T Consensus 488 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~awn~ 567 (686)
T PLN02636 488 KEKFQGGTLSVTWNYLRESMNTYLSQPNPVTTRWEGEEHLRDPKFQLDAFRYRTSRLLQTAALRLRKHSKTLGSFGAWNR 567 (686)
T ss_pred HHHhccCCCchHHHHHHhhhhhhhcccccccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 88767766667788986543211 11111 1234569999999999999999999999888864 3445789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhhhhhHHhcCCCCHHHHHHHHHHHHHHHH
Q 008966 461 LAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYS 540 (547)
Q Consensus 461 ~~~~~~~la~a~~~~~~~~~f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l~~ 540 (547)
++++++++|+||+++++++.|++.|++ ++++++++||++||.||+|+.|++++|||+++||||++|++.|+..+.+||.
T Consensus 568 ~~~~l~~~a~ah~~~~~~~~f~~~v~~-~~~~~~~~vL~~l~~Ly~l~~i~~~~g~fl~~~~l~~~~~~~i~~~i~~l~~ 646 (686)
T PLN02636 568 CLNHLLTLAESHIESVILAKFIEAVER-CPDRSTRAALKLVCDLYALDRIWKDIGTYRNVDYVAPNKAKAIHKLTEYLSF 646 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHhHHHHHHhHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 7899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCC
Q 008966 541 QVFTCV 546 (547)
Q Consensus 541 ~Lrp~~ 546 (547)
+||||+
T Consensus 647 ~lrp~a 652 (686)
T PLN02636 647 QVRNVA 652 (686)
T ss_pred HHhHhH
Confidence 999986
No 6
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=4.3e-97 Score=809.53 Aligned_cols=530 Identities=29% Similarity=0.469 Sum_probs=458.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCCCHHHH-h-hh--------hhhcCC--cchhHhhhhhhHHHHhcCCCHHHHHhH
Q 008966 1 MLSRKELFKNTLRKAAYAWKRIIELRLSEEEA-S-ML--------RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKW 68 (547)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~-~~--------~~~~~~--~~~~~~h~~l~~~~i~~~Gt~~q~~~~ 68 (547)
+|+++++++...++..++.+.....++.++++ + .. .+..+. +.++++|++||+++|..+||++||++|
T Consensus 97 ~~s~~~~~~~~~~~~~~l~~~g~~~~~~pe~g~~~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~ 176 (680)
T PLN02312 97 NQTMEQQREITMKRILYLLERGVFRGWLTETGPEAELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKW 176 (680)
T ss_pred CCCHHHHHHhHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHH
Confidence 36888888887766666655433333333331 1 00 111233 346889999999999999999999999
Q ss_pred hHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceE
Q 008966 69 LPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVN 148 (547)
Q Consensus 69 l~~i~~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~ 148 (547)
||++.+|+++||||+|||+||||+.+++|||+||+++|+|||||||++|+||||+|++..||+++|+||+.++++++|++
T Consensus 177 L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~ 256 (680)
T PLN02312 177 LKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVH 256 (680)
T ss_pred HHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeE
Confidence 99999999999999999999999999999999998889999999999999999999548999999999998887889999
Q ss_pred EEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCc---hh-hHHH
Q 008966 149 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV---PR-QLLY 224 (547)
Q Consensus 149 ~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~---~~-~~~~ 224 (547)
+|+||+||.++ .+.|||+|+++++|+| +++++|++|.|||||||++||||++++|+++|.|.++.. .. ..++
T Consensus 257 ~FlV~ird~~~-~~~PGV~ig~~~~K~G---~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~ 332 (680)
T PLN02312 257 AFIAQIRDQDG-NICPNIRIADCGHKIG---LNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFL 332 (680)
T ss_pred EEEEeecCCCC-CCCCCEEeccCCCccc---ccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHH
Confidence 99999999654 7899999999999999 999999999999999999999999999999999998522 22 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 225 GTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDV 304 (547)
Q Consensus 225 ~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~ 304 (547)
..|..+|+.+++.++|++++|+++|++|+++|+|||.+++++|+||++||++|++|+|+++.+|++.+...++.+++++.
T Consensus 333 ~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~ 412 (680)
T PLN02312 333 APLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKR 412 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999987778899999999999999999999999999988888777531
Q ss_pred HHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHH
Q 008966 305 TQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 384 (547)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 384 (547)
..+...+.|.+++++|+++||.+.+++++|+|+|||+||+.+++++++|||+++.+|+||+|+|+++++||++
T Consensus 413 -------~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~l 485 (680)
T PLN02312 413 -------TPESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKAL 485 (680)
T ss_pred -------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHH
Confidence 1122356899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccc--cccccchhHHhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh----cCChHhHH
Q 008966 385 MKTVSQLGYGNMPVGT--TTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGF 458 (547)
Q Consensus 385 l~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~ 458 (547)
++.+++..+++++.+. .+|+..... ......+..+|.|+++++++|++|+.+++..+++++++ +.+.+++|
T Consensus 486 l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~a~ 562 (680)
T PLN02312 486 LAEYVSAKKRNKPFKGLGLEHMNGPRP---VIPTQLTSSTLRDSQFQLNLFCLRERDLLERFASEVSELQSKGESREFAF 562 (680)
T ss_pred HHHHHHHhccCCCCcchhhhhhccccc---cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 9999887777665442 456532100 00001234689999999999999999999999888753 34567899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhhhhhHHhcCCCCHHHHHHHHHHHHHH
Q 008966 459 AELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSL 538 (547)
Q Consensus 459 n~~~~~~~~la~a~~~~~~~~~f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l 538 (547)
|.+..+++++|+||+++++++.|++.|++ +.++++++||++||.||+|+.|+++ ++|+++||||++|++.|+..|.+|
T Consensus 563 n~~~~~~~~~a~ah~~~~i~~~F~~~i~~-~~~~~~~~vL~~L~~Lyal~~i~~~-~~fl~~~~ls~~~~~~i~~~i~~L 640 (680)
T PLN02312 563 LLSYQLAEDLGRAFSERAILQTFLDAEAN-LPTGSLKDVLGLLRSLYVLISLDED-PSFLRYGYLSPDNVALVRKEVAKL 640 (680)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHhHHHHHhh-HHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 6789999999999999999999765 799999999999999999999999
Q ss_pred HHhhcCCC
Q 008966 539 YSQVFTCV 546 (547)
Q Consensus 539 ~~~Lrp~~ 546 (547)
|.+||||+
T Consensus 641 ~~~lrp~A 648 (680)
T PLN02312 641 CGELRPHA 648 (680)
T ss_pred HHHHhHhH
Confidence 99999986
No 7
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=6e-95 Score=791.25 Aligned_cols=510 Identities=45% Similarity=0.719 Sum_probs=462.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCCC-HHHHhhhhhh---cC--CcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 1 MLSRKELFKNTLRKAAYAWKRIIELRLS-EEEASMLRSS---VD--EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~---~~--~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
+++|+++|++..++..+..+.+.+++++ +.+....... .+ .+.++++|+++|+++|..+||++|+++|+|++.+
T Consensus 52 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~ 131 (610)
T cd01150 52 HLSREELYEELKRKAKTDVERMGELMADDPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANN 131 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999984 5553333222 22 2457889999999999999999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEee
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 154 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~ 154 (547)
|+++||||+|||+||||+.+++|||+||+++++|+||||+++|+||||+|++..|++++|+||+..+++++|+++|+||+
T Consensus 132 g~~ig~~a~TE~ghGSdv~~leTtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~ 211 (610)
T cd01150 132 LEIIGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPI 211 (610)
T ss_pred cChheeeeccccCcCcCcccceeEEEECCCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEec
Confidence 99999999999999999999999999998889999999999999999999667799999999998878889999999999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCc-hh---hHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV-PR---QLLYGTMVYV 230 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~-~~---~~~~~~l~~~ 230 (547)
||.++|++.|||+++++++|+| +++++|+.+.|||||||++|||+++++|+++|.|..+.. +. ..+...+..+
T Consensus 212 rd~~~~~~~pGV~i~~~~~k~G---~~g~dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~g 288 (610)
T cd01150 212 RDPKTHQPLPGVTVGDIGPKMG---LNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGG 288 (610)
T ss_pred cccccCCCCCCeEEeecccccC---CCCCCeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhh
Confidence 9999999999999999999999 999999999999999999999999999999999988644 33 1456677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008966 231 RQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQA 310 (547)
Q Consensus 231 r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (547)
|+.+++.++|.+++|+++|++|+..|+|||.+++++|.||++||++|++|+|+++.+|++++....+...+.+.....+.
T Consensus 289 Rl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~ 368 (610)
T cd01150 289 RVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQ 368 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHeeeecCCCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999998788999999999999999999999999999988888877765555554
Q ss_pred CCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHHHH
Q 008966 311 NDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQ 390 (547)
Q Consensus 311 ~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~ 390 (547)
++.+..+++|..++++|++++|.+.+++++|+|+|||+||+.+++++++++|+++.+|+||+|+|+++++||++++.+++
T Consensus 369 g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~~~ 448 (610)
T cd01150 369 GNSELLAELHALSAGLKAVATWTAAQGIQECREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKYAQ 448 (610)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHHhh
Confidence 55555678899999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred hcCCCCCccccccccchhHHhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhh----hcCChHhHHHHHHHHHH
Q 008966 391 LGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLS----KFTNQEEGFAELAADLV 466 (547)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l~----~~~~~~~~~n~~~~~~~ 466 (547)
..+ +++++++|++|+.+++..+++++. .+++..++||+++++++
T Consensus 449 ~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~awN~~~~~l~ 496 (610)
T cd01150 449 AFS--------------------------------LADYLEAYEWLAAHLLRHAAAQLEKLKKSGSGSFEARNNSQVHLR 496 (610)
T ss_pred hcC--------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 311 356889999999999988887764 34567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhhhhhHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 008966 467 EAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 546 (547)
Q Consensus 467 ~la~a~~~~~~~~~f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l~~~Lrp~~ 546 (547)
++|+||+++++++.|++.|++ ++++++++||++||.||+|+.|+++++||++++|+|++|++.|+..+.+||.+||||+
T Consensus 497 ~~a~Ah~~~~~~~~f~~~~~~-~~~~~~~~vL~~L~~Ly~l~~i~~~~g~fl~~~~ls~~~~~~~~~~~~~l~~~lrp~a 575 (610)
T cd01150 497 CAAKAHTEYTVLQRFHESVEE-IVDPSVRAVLKRLCDLYALWLLEEHIADFLEGGFLGGQDVKAVREALLALLPQLRPDA 575 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 7899999999999999999999999999999999999999999999999999999986
No 8
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=9.5e-60 Score=450.65 Aligned_cols=311 Identities=25% Similarity=0.321 Sum_probs=284.4
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CC--cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV------------DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~--~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+..+.+.+-++|+. |++ ||.+..++ +. ++.+.+|+.|+.++|..+||++||++|+|.+ .
T Consensus 69 ~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~ 147 (398)
T KOG0139|consen 69 YPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-T 147 (398)
T ss_pred CCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhhcchh-h
Confidence 344678888888876 444 77766553 22 5567889999999999999999999888876 7
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEee
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 154 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~ 154 (547)
++.+||||++||+.|||+..+.|+|++| ++.|+|| |+|+||+| +..|++++|||..++..+.+|+++|+||
T Consensus 148 ~d~vgsfAlSEpgaGSDa~A~~T~Ak~~--Gd~~viN-----GsKmWItN-~~~A~~~lVfan~d~~~~~Kgit~fiV~- 218 (398)
T KOG0139|consen 148 GDLVGSFALSEPGAGSDAFALKTTAKKD--GDDYVIN-----GSKMWITN-AGEADWFLVFANADPSKGYKGITCFIVP- 218 (398)
T ss_pred ccccceeeecCCCCCcchHHhhhhHhhc--CCeEEEe-----cceeeecC-CcccceEEEEEecChhhccCceeEEEee-
Confidence 7889999999999999999999999988 8999999 99999999 9999999999999888888999999999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 234 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~ 234 (547)
++.||++++...+|+| +|+++++.+.|+|||||++++|| +.|.+.. .....++-+|+.+
T Consensus 219 ------rd~~Gl~~~k~eDKLG---mRaSsTcql~fedVrVpks~IlG------e~G~Gyk------yAm~~Ln~gRIgi 277 (398)
T KOG0139|consen 219 ------RDTPGLSLGKKEDKLG---MRASSTCQLHFEDVRVPKSSILG------EYGKGYK------YAIEVLNAGRIGI 277 (398)
T ss_pred ------CCCCCcccCCcccccc---ccccceeeEEeccccccchhhcc------cCCcchH------HHHHhcCccceee
Confidence 8899999999999999 99999999999999999999999 5788887 8888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008966 235 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 314 (547)
Q Consensus 235 ~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (547)
+|+.+|.++.|+|.++.|+++|.|||+ +|+++|.+||+|+++...++|+|++.|+++++-++
T Consensus 278 ~AqmlglaQ~c~d~tI~Y~q~R~~FGk-------~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~----------- 339 (398)
T KOG0139|consen 278 GAQMLGLAQGCFDETIPYAQERLQFGK-------RLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQ----------- 339 (398)
T ss_pred hhhhhhhhHhHHHhhhHHHHHHHHhcc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------
Confidence 999999999999999999999999999 99999999999999999999999999999887642
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhH
Q 008966 315 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNI 374 (547)
Q Consensus 315 ~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~ 374 (547)
......+++|+|.++++.|..+...|+|+.||.||+.+++.+++|||++...||||+.+
T Consensus 340 -G~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 340 -GLPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred -CCchHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCCC
Confidence 13356779999999999999999999999999999999999999999999999999863
No 9
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-57 Score=427.31 Aligned_cols=326 Identities=23% Similarity=0.314 Sum_probs=294.9
Q ss_pred HHHHHHHHHHHcCCC----HHH-HhhhhhhcCC--------------cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSVDE--------------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~~~--------------~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+-++.+...++|+. +++ ||.+...++. ...++.|. |+.++|...|+++||++||++++.
T Consensus 60 ~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~ 138 (408)
T KOG0140|consen 60 FPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAE 138 (408)
T ss_pred CcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccchhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhc
Confidence 344566666677766 555 6666554432 34455664 888999999999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCC---CCcceEEEE
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDG---QDHGVNGFI 151 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~---~~~g~~~fl 151 (547)
..++++|++|||+.|||+.++.|+|++. +|+|||| |+|.||+| +.+|+|++|+||+++++ ..++++.|+
T Consensus 139 ~p~~asYcvTEPgAGSDvagikTka~Kk--GDeYiiN-----GsKawItg-~G~anwyfVlaRtd~~pk~p~~Kaft~fi 210 (408)
T KOG0140|consen 139 EPKVASYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN-----GSKAWITG-AGHANWYFVLARTDPDPKTPAGKAFTAFI 210 (408)
T ss_pred chhhhhhhccCCCCCcchhhhhhhhhhc--CCEEEEc-----Cceeeeec-CCccceEEEEEecCCCCCCCCCcceEEEE
Confidence 9999999999999999999999999976 8999999 99999999 99999999999999863 457899999
Q ss_pred EeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHH
Q 008966 152 VQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR 231 (547)
Q Consensus 152 V~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r 231 (547)
|+ .+.||++.+.-..++| .|..|+-.|.|+||+||.+|+|| .+|.++. +..+.+..+|
T Consensus 211 Ve-------~dTpGlt~GkKE~nmG---qr~sdTR~itFEDvrVP~~Nvlg------~~G~GFk------vAm~~fd~tR 268 (408)
T KOG0140|consen 211 VE-------GDTPGLTRGKKEKNMG---QRCSDTRGITFEDVRVPKENVLG------APGAGFK------VAMGGFDKTR 268 (408)
T ss_pred Ee-------CCCCCcCcChhhhccc---ccCCCCceeeeeecccchhcccc------CCCccce------ehhhhccCCC
Confidence 99 8999999999999999 99999999999999999999999 5899988 8899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008966 232 QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAN 311 (547)
Q Consensus 232 ~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 311 (547)
..+++.++|.++++++.+++|+..|++||. ||.++|.+|..|++|...++.+|++.+.+++.+|+ .
T Consensus 269 p~vAa~alG~A~r~ld~a~ky~~eRK~FG~-------~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~-------~ 334 (408)
T KOG0140|consen 269 PNVAAGALGLAQRCLDEATKYALERKAFGT-------PIANHQAVQFMLADMAINLELARLMTRNAAWEVDN-------G 334 (408)
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHhCc-------ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------C
Confidence 999999999999999999999999999999 99999999999999999999999999999887752 1
Q ss_pred CCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHHH
Q 008966 312 DFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 389 (547)
Q Consensus 312 ~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~ 389 (547)
+ ++ ...++++|.++++.+..++..++|++||.||..++|.+.+.||++..+||||++++++..|+|.||..+.
T Consensus 335 r----~~-sy~aSiAK~fA~D~an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~~ 407 (408)
T KOG0140|consen 335 R----RN-SYYASIAKLFATDTANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKFA 407 (408)
T ss_pred C----cc-hHHHHHHHHHhhhhHHHHHHHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHhc
Confidence 2 23 6779999999999999999999999999999999999999999999999999999999999999998753
No 10
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-56 Score=421.36 Aligned_cols=323 Identities=22% Similarity=0.295 Sum_probs=292.3
Q ss_pred HHHHHHHHHHcCCC----HHH-HhhhhhhcC--------------CcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSSVD--------------EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~~~--------------~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
.+++|+.+.+.|+. +++ ||.+.+.++ -+..++.|.+++..-|.+.||+||+++|||++.+|
T Consensus 76 ~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sG 155 (421)
T KOG0141|consen 76 LREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISG 155 (421)
T ss_pred HHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcc
Confidence 67799999998765 454 666554432 15678999999999999999999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccC--CCCcceEEEEEe
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQ 153 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~--~~~~g~~~flV~ 153 (547)
+-+|+.|||||+.|||+.++.+.|+++ ++.|||| |.|+||+| ++.||..||+|.++.. ...+|+++|||.
T Consensus 156 e~iGalAMsEp~AGSDvv~mK~~Aek~--g~~yiLN-----GsK~witN-G~~advliVyAkTd~~a~~~~hGIt~FiVE 227 (421)
T KOG0141|consen 156 EHIGALAMSEPGAGSDVVSMKLKAEKK--GDDYILN-----GSKFWITN-GPDADVLIVYAKTDHSAVPPSHGITAFIVE 227 (421)
T ss_pred cccceeeecCCCCCCccceeeeeceec--CCcEEec-----CcEEEEec-CCCCcEEEEEEecCCCCCCCcCceEEEEEc
Confidence 999999999999999999999999988 8999999 99999999 9999999999999886 456999999999
Q ss_pred ecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHH
Q 008966 154 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 233 (547)
Q Consensus 154 ~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~ 233 (547)
+.+||++..+--+|+| |+|.+++++.|+|++||.+|+||. ++.++- +++..+...|+.
T Consensus 228 -------kgm~GFs~~~KLdKlG---mrgsdTcELvFed~~vpas~ilg~------enkGvY------vlMsgLd~ERLv 285 (421)
T KOG0141|consen 228 -------KGMPGFSTAQKLDKLG---MRGSDTCELVFEDCKVPASNILGE------ENKGVY------VLMSGLDLERLV 285 (421)
T ss_pred -------CCCcccccchhhHhhc---CCCCcchheehhhccCcHHHhcCc------CCceEE------EEecCCChhHhh
Confidence 8999999999999999 999999999999999999999994 555554 556677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008966 234 IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF 313 (547)
Q Consensus 234 ~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 313 (547)
+++..+|.++.++|.+..|+++|++||+ +|.+||.+|+++++|...+.+.|..++.++..-|. +..
T Consensus 286 la~gplglmqa~~d~~~~Y~~qR~afgk-------~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~-------g~~ 351 (421)
T KOG0141|consen 286 LAAGPLGLMQAALDETFPYAHQRKAFGK-------KIGHFQLLQGKLADMYTTLCASRSYVYNVARACDA-------GNV 351 (421)
T ss_pred hccCchHHHHHHHHHhhhHHHHHHHhCC-------chhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-------CCC
Confidence 9999999999999999999999999999 99999999999999999999999999888765542 222
Q ss_pred CChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 314 STLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 314 ~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
+ ...+++++.|+++.+..++-+|+|++||.||.+++|.+|++||++...|+.|++++.+..|+|.+.+
T Consensus 352 ~-----~kdcag~il~aaE~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~ 419 (421)
T KOG0141|consen 352 D-----PKDCAGVILYAAEKATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNK 419 (421)
T ss_pred C-----hhhhhhhhhhHhhhhHHHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhc
Confidence 1 3348999999999999999999999999999999999999999999999999999999999999865
No 11
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=3.6e-48 Score=425.78 Aligned_cols=454 Identities=17% Similarity=0.179 Sum_probs=322.8
Q ss_pred HHHHHHHHHHcCCC----HHH-Hhhhhhhc---------C---Cc--chhHhhhhhhH-HHHhcCCCHHHHHhHhHHHhc
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSSV---------D---EP--AFTDLHWGMFV-PAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~~---------~---~~--~~~~~h~~l~~-~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
+.++|+.+++.||. |++ ||.+.+.. + .+ ..+.+|..++. ..|..+||++||++|||++++
T Consensus 111 P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~ 190 (777)
T PRK09463 111 PPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLAR 190 (777)
T ss_pred CHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 46799999999987 555 55543321 1 12 23456766653 478899999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEE---eCCCC---eEEEecCCCCceeEcccCCCCCCcEEEEEEEEcc-C-----C
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATF---DPQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT-D-----G 142 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~---d~~~~---~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~-~-----~ 142 (547)
|+.++||++|||++|||+.++.|+++. +.+++ +|+|| |+|+|||+ +..||+++|++++.. + +
T Consensus 191 Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLN-----G~K~~IT~-a~~Ad~l~V~ar~~dp~~~~g~~ 264 (777)
T PRK09463 191 GEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLT-----WNKRYITL-APIATVLGLAFKLYDPDGLLGDK 264 (777)
T ss_pred CCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEE-----EEEEeeCC-CCccCEEEEEEEecCcccccCCC
Confidence 999999999999999999999876542 12244 69999 99999998 999999999998632 2 2
Q ss_pred CCcceEEEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhH
Q 008966 143 QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQL 222 (547)
Q Consensus 143 ~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~ 222 (547)
++.|+++|||| .+.|||++++.+.++| ++ ..++.+.|+||+||.+++||.. ...|.++. +
T Consensus 265 ~~~Git~fLVp-------~d~pGV~ig~~~~~lG---~r-~~~g~v~fddV~VP~d~lLG~~---~~~G~G~~------~ 324 (777)
T PRK09463 265 EDLGITCALIP-------TDTPGVEIGRRHFPLN---VP-FQNGPTRGKDVFIPLDYIIGGP---KMAGQGWR------M 324 (777)
T ss_pred CCCceEEEEEE-------CCCCCeEecccccccC---cc-cccceEEeeeeecCHHHhcccc---cccChHHH------H
Confidence 35789999999 7789999999999999 88 5799999999999999999841 11367766 7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 223 LYGTMVYVR-QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 301 (547)
Q Consensus 223 ~~~~l~~~r-~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~ 301 (547)
+...+..+| +.+++.++|+++++++.+++|+++|+|||. ||++||.+|++|++|.+.+|+++++.+.+...+
T Consensus 325 l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~-------pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~ 397 (777)
T PRK09463 325 LMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKL-------PIGKFEGIEEPLARIAGNAYLMDAARTLTTAAV 397 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------ChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999 899999999999999999999999999999 999999999999999999999888877776554
Q ss_pred HHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc--CChhhhcccccccccccchhHHHHHH
Q 008966 302 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIVLLLQ 379 (547)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~--~~l~~~~rd~~~~~~~eG~~~vl~~~ 379 (547)
++ +. .....++++|.++++.+.+++++|+|+|||.||+.+ ++++++|||++...|+||+|++++..
T Consensus 398 D~-------G~-----~~~~~aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~ 465 (777)
T PRK09463 398 DL-------GE-----KPSVLSAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSL 465 (777)
T ss_pred hC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHH
Confidence 31 11 124678999999999999999999999999999997 89999999999999999999999988
Q ss_pred H---------HHHHHHHHHHhcCCC---------CCccccccc-cch-hHHh-hhcCCccccCCCCCH--HHHHHHHHHH
Q 008966 380 V---------ARFLMKTVSQLGYGN---------MPVGTTTYM-GRA-EQLM-QCHCGVQKAEDWLNP--SAILEAFEAR 436 (547)
Q Consensus 380 i---------a~~ll~~~~~~~~~~---------~~~~~~~~l-~~~-~~~~-~~~~~~~~~~~~~~~--~~l~~~~~~r 436 (547)
+ --++++.+..+.... .|.+-..|+ .+. ..+. +.......... .++ .-..+.+++.
T Consensus 466 iifgqga~r~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 544 (777)
T PRK09463 466 MIFGQGAIRCHPYVLKEMEAAQNNDKQALKAFDKALFGHIGFVVSNAVRSFWLGLTGGRLSAAP-VDDATKRYYRQLNRL 544 (777)
T ss_pred HHcCCcchhcCHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCC-CChhHHHHHHHHHHH
Confidence 6 013344443332211 111111111 100 0110 00000000000 122 1222222222
Q ss_pred HHHHHHHHHHHhhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhhhhh
Q 008966 437 AIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGD 516 (547)
Q Consensus 437 ~~~~~~~~~~~l~~~~~~~~~~n~~~~~~~~la~a~~~~~~~~~f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~~~~ 516 (547)
+..+...+---|.+- ......-+..+.+++.+.++.++...-+.+.++ ...+.....|-..+.-++++.+++.+..
T Consensus 545 s~~~a~~~d~~l~~~---g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 620 (777)
T PRK09463 545 SANLALLADVSMLVL---GGSLKRRERLSARLGDILSQLYLASAVLKRYED-EGRPEADLPLVHWAVQDALYQAEQALDG 620 (777)
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222111111111 011122234457788888888877776666654 2233333457777777888888887655
Q ss_pred HH
Q 008966 517 FV 518 (547)
Q Consensus 517 fl 518 (547)
++
T Consensus 621 ~~ 622 (777)
T PRK09463 621 LL 622 (777)
T ss_pred HH
Confidence 44
No 12
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=9.8e-49 Score=407.81 Aligned_cols=319 Identities=18% Similarity=0.166 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc---------CC---cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV---------DE---PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 76 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~---------~~---~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~ 76 (547)
.+.++|+.+.+.||. |++ ||.+.+.. +. +.|+..+..+....+..+|+++||++|||++.+|+
T Consensus 38 ~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~ 117 (378)
T TIGR03203 38 WSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDGS 117 (378)
T ss_pred CCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Confidence 356899999999987 555 65544332 11 23443343355567889999999999999999999
Q ss_pred eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCC-CCcceEEEEEeec
Q 008966 77 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLR 155 (547)
Q Consensus 77 ~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~-~~~g~~~flV~~r 155 (547)
.++|+++|||++|||+.+++|+|+.+ +|+|+|| |+|+||++ +..||+++|+|++.++. +..|+++|+||
T Consensus 118 ~~~a~a~tEp~~gsd~~~~~t~a~~~--g~~~~l~-----G~K~~vt~-a~~Ad~~lv~ar~~~~~~~~~g~~~flV~-- 187 (378)
T TIGR03203 118 KTFAFAQLEKNSRYDLGDVSTTAKKT--GDGWVID-----GEKFVVLN-GETADTLIVTARTKGARRDRTGIGVFLVP-- 187 (378)
T ss_pred hhheeeecCCCCCCCcccceEEEEEc--CCEEEEE-----eEEEEecC-CccCCEEEEEEecCCCCCCCCceEEEEEE--
Confidence 99999999999999999999999987 7899999 99999999 89999999999986432 34689999999
Q ss_pred CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966 156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 235 (547)
Q Consensus 156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~ 235 (547)
.+.|||++.+.+.++| + ..+.|.||||+||.+++||. .|.++. .+...+...|+.++
T Consensus 188 -----~~~~Gv~~~~~~~~~g---~---~~~~l~fd~v~vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~a 244 (378)
T TIGR03203 188 -----AGAKGVTIKGYPTQDG---L---HAADITFTGVVVGADAAIGD------PENALP------LIERVVDDARAALC 244 (378)
T ss_pred -----CCCCCceeccccccCC---C---ceeeEEECCCcccHHhhcCC------cchHHH------HHHHHHHHHHHHHH
Confidence 7789999988777666 4 46899999999999999983 566555 67778889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966 236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 315 (547)
Q Consensus 236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (547)
+.++|+++++++.+++|+++|+|||+ ||.+||.+|++|++|.+.+++++.+++.++...+. + .
T Consensus 245 a~~~G~a~~al~~a~~ya~~R~qFG~-------pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~--------~--~ 307 (378)
T TIGR03203 245 AEAVGLMDESLKTTVEYIKTRKQFGV-------PIGSFQVLQHRAADMFVAVEQARSMAMFATMASDF--------D--D 307 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhcCeecCc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------c--c
Confidence 99999999999999999999999999 99999999999999999999999999988775531 1 1
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHH
Q 008966 316 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVAR 382 (547)
Q Consensus 316 ~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~ 382 (547)
..+....++++|.++++.+.++++.|+|+|||+||+.+++++++|||++...+++|++++++..++.
T Consensus 308 ~~~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 308 AKERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1223467899999999999999999999999999999999999999999999999999999998887
No 13
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=3.6e-48 Score=404.27 Aligned_cols=329 Identities=26% Similarity=0.334 Sum_probs=284.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcc--hhHhhhhhhHHHHhcCCCHHHHHhH
Q 008966 8 FKNTLRKAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKW 68 (547)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~--~~~~h~~l~~~~i~~~Gt~~q~~~~ 68 (547)
+......+.++|+.+.+.||. |++ ||.+.... +.+. .+.+|. ++...+..+|+++|+++|
T Consensus 27 ~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~ 105 (375)
T cd01162 27 WDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDEQRERF 105 (375)
T ss_pred HHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHH
Confidence 333334567899999999987 555 55443321 1222 344554 566678889999999999
Q ss_pred hHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceE
Q 008966 69 LPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVN 148 (547)
Q Consensus 69 l~~i~~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~ 148 (547)
+|++.+|+.++|+++|||++|||+..++|+|+++ +++|+|| |+|+|++| +..||+++|+|++..+ ...+++
T Consensus 106 l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~-----G~k~~vs~-~~~ad~~~v~a~~~~~-~~~~~~ 176 (375)
T cd01162 106 LPDLCTMEKLASYCLTEPGSGSDAAALRTRAVRE--GDHYVLN-----GSKAFISG-AGDSDVYVVMARTGGE-GPKGIS 176 (375)
T ss_pred HHHHhCCCceeEEEecCCCCCCChhhCEEEEEEe--CCEEEEE-----EEEEEecC-CCCCCEEEEEEEecCC-CCCceE
Confidence 9999999999999999999999999999999988 7899999 99999999 8999999999997643 235788
Q ss_pred EEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHH
Q 008966 149 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMV 228 (547)
Q Consensus 149 ~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~ 228 (547)
+|+|| .+.|||++.+.|+++| +++++++.+.||||+||.+++|+. +|.++. .....+.
T Consensus 177 ~~lv~-------~~~~gv~v~~~~~~~g---~~~~~~~~l~f~~v~Vp~~~~lg~------~~~g~~------~~~~~l~ 234 (375)
T cd01162 177 CFVVE-------KGTPGLSFGANEKKMG---WNAQPTRAVIFEDCRVPVENRLGG------EGQGFG------IAMAGLN 234 (375)
T ss_pred EEEEe-------CCCCCeecCCcccccC---CCCCCeeEEEECceEecHHHcCCC------CCchHH------HHHHHHH
Confidence 99999 7789999999999999 999999999999999999999984 566554 4556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008966 229 YVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRL 308 (547)
Q Consensus 229 ~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 308 (547)
.+|+.+++.++|+++++++.+++|+++|+|||. ||++||.+|++|+++.+.+++++.+++.++..+++
T Consensus 235 ~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~-------~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~----- 302 (375)
T cd01162 235 GGRLNIASCSLGAAQAALDLARAYLEERKQFGK-------PLADFQALQFKLADMATELVASRLMVRRAASALDR----- 302 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 899999999999999999999999999999998 99999999999999999999999999998877652
Q ss_pred hcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 309 QANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
+. ++....++++|+++++.+.++++.|+++|||.||+.+++++++|||++...+++|++++++.++++.+++
T Consensus 303 --~~----~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 303 --GD----PDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred --CC----CcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 11 1234567889999999999999999999999999999999999999999999999999999999999875
No 14
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=4.3e-48 Score=405.14 Aligned_cols=320 Identities=23% Similarity=0.285 Sum_probs=279.7
Q ss_pred HHHHHHHHHHHcCCC---HHH-Hhhhhhhc------------CCc--chhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 14 KAAYAWKRIIELRLS---EEE-ASMLRSSV------------DEP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~---~~~-~~~~~~~~------------~~~--~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
.+.++|+.+.+.||. |++ ||.+.+.. +.+ .++.+|..++..+|..+|+++|+++|+|++.+|
T Consensus 45 ~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G 124 (386)
T cd01151 45 FDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASG 124 (386)
T ss_pred CCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 456899999999974 554 55443322 112 345567666767889999999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeec
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 155 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r 155 (547)
++++|+++|||++|||+.++.|+|+++ +|+|+|| |+|+|+|| +..||+++|+|++..+ .++++|+||
T Consensus 125 ~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~is~-~~~Ad~~lv~ar~~~~---~~~~~flVp-- 191 (386)
T cd01151 125 ELIGCFGLTEPNHGSDPGGMETRARKD--GGGYKLN-----GSKTWITN-SPIADVFVVWARNDET---GKIRGFILE-- 191 (386)
T ss_pred CeEEEEEecCCCCCCChhhCeEEEEEE--CCEEEEE-----EEEEeecC-CCcCCEEEEEEEECCC---CcEEEEEEc--
Confidence 999999999999999999999999988 7899999 99999999 8999999999998542 468899999
Q ss_pred CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966 156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 235 (547)
Q Consensus 156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~ 235 (547)
...|||++.+.|+++| +++++++.+.|+||+||.+++|+. +.++. .....+...|+.++
T Consensus 192 -----~~~~gv~i~~~~~~~G---~~g~~s~~v~f~~v~Vp~~~~l~~-------~~g~~------~~~~~~~~~r~~~a 250 (386)
T cd01151 192 -----RGMKGLSAPKIQGKFS---LRASITGEIVMDNVFVPEENLLPG-------AEGLR------GPFKCLNNARYGIA 250 (386)
T ss_pred -----CCCCCeecCCCCCCcC---CCCCceeEEEEccEEeCHHHcCCc-------cccHH------HHHHHHHHHHHHHH
Confidence 6789999999999999 999999999999999999999973 33333 45566778899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966 236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 315 (547)
Q Consensus 236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (547)
+.++|+++++++.+++|+++|+|||+ ||+++|.+|++|+++.+.+++++.+++.++..+++ +.
T Consensus 251 a~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~-------~~--- 313 (386)
T cd01151 251 WGALGAAEDCYHTARQYVLDRKQFGR-------PLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQ-------GK--- 313 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhCeecCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC---
Confidence 99999999999999999999999998 99999999999999999999999999998876652 11
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 316 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 316 ~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
.....++++|.++++.+.++++.|+|+|||+||+.+++++++|||++...+++|++++++..+++.+|+
T Consensus 314 --~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~ 382 (386)
T cd01151 314 --ATPEQISLLKRNNCGKALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITG 382 (386)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhc
Confidence 123457889999999999999999999999999999999999999999999999999999999999886
No 15
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=6.3e-48 Score=406.69 Aligned_cols=329 Identities=22% Similarity=0.280 Sum_probs=284.9
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc---------C--C--cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV---------D--E--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~---------~--~--~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
.+.++|+.+.+.||. |++ ||.+.... + . +.++.+|..+....+..+|+++|+++|+|++.+|
T Consensus 57 ~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G 136 (409)
T cd01161 57 IPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASG 136 (409)
T ss_pred CCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhhChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCC
Confidence 346789999999986 555 55433221 1 1 2335567656556688899999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEcc---CCC-CcceEEEE
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT---DGQ-DHGVNGFI 151 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~---~~~-~~g~~~fl 151 (547)
++++|+++|||++|||+..++|+|++++++++|+|| |.|+|++| +..||+++|.|++.. ++. ..++.+|+
T Consensus 137 ~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~-----G~K~~vs~-~~~Ad~~lv~ar~~~~~~~g~~~~~~~~fl 210 (409)
T cd01161 137 EWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLN-----GSKIWITN-GGIADIFTVFAKTEVKDATGSVKDKITAFI 210 (409)
T ss_pred CeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEE-----eEEEeecC-CCcCCEEEEEEEcCCCCCCCCCCCceEEEE
Confidence 999999999999999999999999997667799999 99999999 889999999999862 221 35788999
Q ss_pred EeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHH
Q 008966 152 VQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR 231 (547)
Q Consensus 152 V~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r 231 (547)
|| .+.|||++.+.|+++| +++++++.+.|+||+||++++|+. .|.++. .....+..+|
T Consensus 211 vp-------~~~~gv~~~~~~~~~G---~~g~~s~~v~~~~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r 268 (409)
T cd01161 211 VE-------RSFGGVTNGPPEKKMG---IKGSNTAEVYFEDVKIPVENVLGE------VGDGFK------VAMNILNNGR 268 (409)
T ss_pred Ee-------CCCCCcccCCcccccC---CCCCCceEEEeccEEECHHHcCCC------CChHHH------HHHHHHHhHH
Confidence 99 6789999999999999 999999999999999999999984 555544 5566788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008966 232 QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAN 311 (547)
Q Consensus 232 ~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 311 (547)
+.+++.++|+++++++.+++|++.|+|||. ||.++|.+|++|+++.+.+++++.+++.++..+++ .
T Consensus 269 ~~~aa~~lG~a~~al~~a~~~a~~R~~fg~-------~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~-------~ 334 (409)
T cd01161 269 FGMGAALIGTMKRCIEKAVDYANNRKQFGK-------KIHEFGLIQEKLANMAILQYATESMAYMTSGNMDR-------G 334 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhceeCCc-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C
Confidence 999999999999999999999999999998 99999999999999999999999999998877652 1
Q ss_pred CCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHH
Q 008966 312 DFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 387 (547)
Q Consensus 312 ~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 387 (547)
. ..+....++++|+++++.+.++++.|+|++||.||+.+++++++|||++...+++|++++++.+|++.+|++
T Consensus 335 ~---~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 335 L---KAEYQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred C---CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 1 123456689999999999999999999999999999999999999999999999999999999999999875
No 16
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=5.3e-48 Score=402.85 Aligned_cols=323 Identities=24% Similarity=0.312 Sum_probs=281.3
Q ss_pred HHHHHHHHHHHHcCCC----HHH-Hhhhhhhc---------C----CcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 13 RKAAYAWKRIIELRLS----EEE-ASMLRSSV---------D----EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 13 ~~~~~~~~~~~~~g~~----~~~-~~~~~~~~---------~----~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
..+.++|+.+.+.||. |++ ||.+.+.. . .+..+.+|..++...+..+|+++|+++|+|++.+
T Consensus 30 ~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~ 109 (372)
T cd01160 30 EVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVA 109 (372)
T ss_pred CCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 3567799999999987 555 55543321 1 1223556766777889999999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCC-CCcceEEEEEe
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQ 153 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~-~~~g~~~flV~ 153 (547)
|+.++|+++|||++|||+.+++|+|+++ +++|+|| |+|+|++| +..||+++|+|++.+++ ++.++++|+||
T Consensus 110 g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~-----G~k~~vs~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lv~ 181 (372)
T cd01160 110 GKKIGAIAMTEPGAGSDLQGIRTTARKD--GDHYVLN-----GSKTFITN-GMLADVVIVVARTGGEARGAGGISLFLVE 181 (372)
T ss_pred CCeeEEEEecCCCCCCchhhCeEEEEEe--CCEEEEe-----eEEEEecC-CCccCEEEEEEEeCCCCCCCCceEEEEEe
Confidence 9999999999999999999999999998 7899999 99999999 89999999999987542 34678999999
Q ss_pred ecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHH
Q 008966 154 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 233 (547)
Q Consensus 154 ~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~ 233 (547)
.+.|||++.+.|+++| +++++++.+.|+||+||.+++|+. ++.++. .....+...|+.
T Consensus 182 -------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~Vp~~~~lg~------~~~g~~------~~~~~~~~~~~~ 239 (372)
T cd01160 182 -------RGTPGFSRGRKLKKMG---WKAQDTAELFFDDCRVPAENLLGE------ENKGFY------YLMQNLPQERLL 239 (372)
T ss_pred -------CCCCCeecCCcccccc---CCCCCeEEEEecceEccHHHcCCC------CCchHH------HHHHHHHHHHHH
Confidence 6789999999999999 999999999999999999999984 454443 455667788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008966 234 IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF 313 (547)
Q Consensus 234 ~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 313 (547)
+++.++|+++++++.+++|++.|+|||+ ||.+||.+|++|+++.+.+++++.+++.++..+++ ..
T Consensus 240 ~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~-------~~- 304 (372)
T cd01160 240 IAAGALAAAEFMLEETRNYVKQRKAFGK-------TLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQ-------GR- 304 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-
Confidence 9999999999999999999999999998 89999999999999999999999999888765541 11
Q ss_pred CChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHH
Q 008966 314 STLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 384 (547)
Q Consensus 314 ~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 384 (547)
. ....++++|.++++.+.++++.|+++|||.||+.+++++++|||+++..+++|++++++.+|++.+
T Consensus 305 ~----~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 305 L----DVAEASMAKYWATELQNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred C----chHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 1 234678899999999999999999999999999999999999999999999999999999999875
No 17
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=3.4e-47 Score=416.45 Aligned_cols=333 Identities=19% Similarity=0.187 Sum_probs=272.9
Q ss_pred HHHHHHHHHHHcCCC----HHH-HhhhhhhcC--------------CcchhHhhhhhh-HHHHhcCCCHHHHHhHhHHHh
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSVD--------------EPAFTDLHWGMF-VPAIKGQGTDEQHQKWLPLAY 73 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~~--------------~~~~~~~h~~l~-~~~i~~~Gt~~q~~~~l~~i~ 73 (547)
.+.++|+.+++.||. |++ ||.+.+..+ .+..+.+|.+++ +.+|..+||++||++|||+++
T Consensus 109 ~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LA 188 (774)
T PRK13026 109 LPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLA 188 (774)
T ss_pred CCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHh
Confidence 356899999999987 555 555433211 123355666555 357899999999999999999
Q ss_pred ccceeeEEeccCCCCCCCCCCCceEEEE---eCCCC---eEEEecCCCCceeEcccCCCCCCcEEEEEEEEc-cC-----
Q 008966 74 KMEIIGCYAQTELGHGSNVQGLETTATF---DPQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLI-TD----- 141 (547)
Q Consensus 74 ~g~~~g~~a~TE~~~Gsd~~~l~TtA~~---d~~~~---~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~-~~----- 141 (547)
+|+.++||++|||++|||+.++.|+|+. +.+++ +|+|| |+|+|||+ +..||+++|.+++. ++
T Consensus 189 sGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLN-----G~K~~IT~-A~~Ad~~~v~ar~~dpd~~~g~ 262 (774)
T PRK13026 189 DGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLT-----WDKRYITL-APVATVLGLAFKLRDPDGLLGD 262 (774)
T ss_pred CCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEE-----EEEEeecC-ccccCEEEEEEEeeCccccccC
Confidence 9999999999999999999999987652 12255 69999 99999998 99999998887753 32
Q ss_pred CCCcceEEEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhh
Q 008966 142 GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQ 221 (547)
Q Consensus 142 ~~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~ 221 (547)
++..|+++|+|| .+.|||++++.++++| +++ .++.+.||||+||.+++||.. +..|.++.
T Consensus 263 ~~~~GiT~fLVp-------~d~pGV~ig~~~~~lG---~~~-~~g~v~fdDV~VP~d~lLG~~---~~~G~G~~------ 322 (774)
T PRK13026 263 KKELGITCALIP-------TDHPGVEIGRRHNPLG---MAF-MNGTTRGKDVFIPLDWIIGGP---DYAGRGWR------ 322 (774)
T ss_pred CCCCceEEEEEE-------CCCCCeEeeccccccc---cCc-ccceEEEeeeEccHHHhcCCc---ccCChHHH------
Confidence 235689999999 7789999999999999 886 468999999999999999841 11377776
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHH---HHHHHHHHHHHH
Q 008966 222 LLYGTMVYVR-QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA---SAYAFRFVGEWL 297 (547)
Q Consensus 222 ~~~~~l~~~r-~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a---~~~a~~~~~~~~ 297 (547)
++...+..+| +.+++.++|+++.+++.+++|+++|+|||. ||++||.+|++|++|.+ .+++++.+++.+
T Consensus 323 ~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~-------pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a 395 (774)
T PRK13026 323 MLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGM-------PIGQFEGVQEALARIAGNTYLLEAARRLTTTG 395 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999 899999999999999999999999999999 99999999999999998 566677666554
Q ss_pred HHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc--CChhhhcccccccccccchhHH
Q 008966 298 KWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIV 375 (547)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~--~~l~~~~rd~~~~~~~eG~~~v 375 (547)
. + .+. .....++++|.++++.+.+++++|+|+|||.||+.+ ++++++|||++...|+||+|++
T Consensus 396 ~---D-------~G~-----~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei 460 (774)
T PRK13026 396 L---D-------LGV-----KPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANIL 460 (774)
T ss_pred H---H-------CCC-----CchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHH
Confidence 2 1 111 134678999999999999999999999999999998 8999999999999999999999
Q ss_pred HHHHH--HH-------HHHHHHHHhcCC
Q 008966 376 LLLQV--AR-------FLMKTVSQLGYG 394 (547)
Q Consensus 376 l~~~i--a~-------~ll~~~~~~~~~ 394 (547)
++..+ ++ ++++.+..++..
T Consensus 461 ~R~l~ifgqga~rchp~~~~e~~a~~~~ 488 (774)
T PRK13026 461 TRNLMIFGQGATRCHPYVLAEMEAAAME 488 (774)
T ss_pred HHHHHHhhccHhhCCchHHHHHHHhhCC
Confidence 98633 22 567777665443
No 18
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-47 Score=400.94 Aligned_cols=329 Identities=18% Similarity=0.173 Sum_probs=280.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchhHhhhhhhHHHHhcCCCHHHHHhHhH
Q 008966 8 FKNTLRKAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLP 70 (547)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~ 70 (547)
+++..+.+.++|+.+.+.||. |++ ||.+.... +.+ .+.++..+...+|..+|+++||++|+|
T Consensus 32 ~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~~~~~~~~~l~~~g~~~q~~~~l~ 110 (381)
T PRK12341 32 CDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKCGAP-AFLITNGQCIHSMRRFGSAEQLRKTAE 110 (381)
T ss_pred HHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcChh-HHHHhhhhhHHHHHHhCCHHHHHHHhH
Confidence 344444577899999999976 554 55544332 112 223344456667888999999999999
Q ss_pred HH-hccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCC-CcceE
Q 008966 71 LA-YKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQ-DHGVN 148 (547)
Q Consensus 71 ~i-~~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~-~~g~~ 148 (547)
++ .+|+.++|+++|||++|||+..++|+|+++ +|+|+|| |+|+|+|| +..||+++|+|++..+++ ..++.
T Consensus 111 ~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~--~gg~~ln-----G~K~~is~-~~~Ad~~~v~a~~~~~~~~~~~~~ 182 (381)
T PRK12341 111 STLETGDPAYALALTEPGAGSDNNSATTTYTRK--NGKVYLN-----GQKTFITG-AKEYPYMLVLARDPQPKDPKKAFT 182 (381)
T ss_pred HHhhCCCeEEEEEecCCCCCCchhhCeeEEEEe--CCEEEEE-----eEEEEEcC-CccCCEEEEEEEcCCCCCCCCceE
Confidence 99 599999999999999999999999999987 7899999 99999999 899999999999765433 35788
Q ss_pred EEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHH
Q 008966 149 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMV 228 (547)
Q Consensus 149 ~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~ 228 (547)
+|+|| .+.|||++. .|+++| +++++++.+.|+||+||.+++|+. +|.++. .....+.
T Consensus 183 ~~lV~-------~~~~gv~~~-~~~~~G---~~~~~~~~v~~~~v~Vp~~~~lg~------~~~g~~------~~~~~~~ 239 (381)
T PRK12341 183 LWWVD-------SSKPGIKIN-PLHKIG---WHMLSTCEVYLDNVEVEESDLVGE------EGMGFL------NVMYNFE 239 (381)
T ss_pred EEEEe-------CCCCceeec-cccccc---CCCCCceEEEECcEEecHHHcCCC------CChHHH------HHHHHHH
Confidence 99999 678999995 589999 999999999999999999999984 555443 4445677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008966 229 YVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRL 308 (547)
Q Consensus 229 ~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 308 (547)
..|+.+++.++|+++++++.+++|+++|+|||. ||.++|.+|++|+++.+.+++++.+.+++++.+++
T Consensus 240 ~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~----- 307 (381)
T PRK12341 240 MERLINAARSLGFAECAFEDAARYANQRIQFGK-------PIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADN----- 307 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 899999999999999999999999999999998 99999999999999999999999999988765541
Q ss_pred hcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHH
Q 008966 309 QANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 387 (547)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 387 (547)
+. .....++++|.++++.+.++++.|++++||+||..+++++++|||++...+++|++++++.++++.+++.
T Consensus 308 --~~-----~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~ 379 (381)
T PRK12341 308 --GQ-----SLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKD 379 (381)
T ss_pred --CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHhh
Confidence 11 1245678999999999999999999999999999999999999999999999999999999999999864
No 19
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.7e-47 Score=399.73 Aligned_cols=326 Identities=18% Similarity=0.179 Sum_probs=277.4
Q ss_pred HHHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 13 RKAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 13 ~~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
..+.+.|+.+.+.||. |++ ||.+.+.. +.+.++..+......+|..+|+++||++|+|++.+|
T Consensus 37 ~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~l~~~g~~e~~~~~l~~~~~g 116 (380)
T PRK03354 37 VYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTG 116 (380)
T ss_pred CCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCcchHHHHHhcccHHHHHHhCCHHHHHHHHHHHhCC
Confidence 3567899999999987 555 66554332 123333222222356788899999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeec
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 155 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r 155 (547)
+.++|+++|||++|||+.++.|+|+.+ +|+|+|| |+|+|+++ +.+|||++|+|++..+++..++..|+||
T Consensus 117 ~~~~~~a~tE~~~gs~~~~~~t~a~~~--~~g~~ln-----G~K~fis~-~~~ad~~~v~a~~~~~~~~~~~~~~lv~-- 186 (380)
T PRK03354 117 KQMWNSAITEPGAGSDVGSLKTTYTRR--NGKVYLN-----GSKCFITS-SAYTPYIVVMARDGASPDKPVYTEWFVD-- 186 (380)
T ss_pred CeeEEEEecCCCCCCchhhCEEEEEEe--CCEEEEe-----eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceeEEEEE--
Confidence 999999999999999999999999987 7899999 99999999 8999999999997533333567889999
Q ss_pred CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966 156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 235 (547)
Q Consensus 156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~ 235 (547)
.+.|||++. .|+++| +++++++.+.|+||+||.+++++. +|.++. .....+...|+.++
T Consensus 187 -----~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~Vp~~~~lg~------~g~g~~------~~~~~~~~~r~~~a 245 (380)
T PRK03354 187 -----MSKPGIKVT-KLEKLG---LRMDSCCEITFDDVELDEKDMFGR------EGNGFN------RVKEEFDHERFLVA 245 (380)
T ss_pred -----CCCCceEec-cccccC---CCCCCeEEEEEccEEecHHHcCCC------CChHHH------HHHHHHHHHHHHHH
Confidence 668999996 589999 999999999999999999999984 555543 33445667888999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966 236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 315 (547)
Q Consensus 236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (547)
+.++|+++++++.+++|++.|+|||. ||.++|.+|++|+++.+.+++++.++++++..+++ ..
T Consensus 246 a~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~-------~~--- 308 (380)
T PRK03354 246 LTNYGTAMCAFEDAARYANQRVQFGE-------AIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADN-------GT--- 308 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC---
Confidence 99999999999999999999999999 99999999999999999999999999988765541 11
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHH
Q 008966 316 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 388 (547)
Q Consensus 316 ~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 388 (547)
.....++++|.++++.+.++++.|++++||+||+.+++++++|||++...+++|++++++..+++.+++.+
T Consensus 309 --~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~ 379 (380)
T PRK03354 309 --ITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQY 379 (380)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhc
Confidence 11345788999999999999999999999999999999999999999999999999999999999998765
No 20
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=3.3e-47 Score=397.68 Aligned_cols=325 Identities=23% Similarity=0.314 Sum_probs=278.3
Q ss_pred HHHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchhHhhh-hhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 13 RKAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFTDLHW-GMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 13 ~~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~~~h~-~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
..+.++|+.+.+.||. |++ ||.+.+.. ..+.++.++. .+....+..+|+++||++||+++.+
T Consensus 32 ~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~ 111 (378)
T cd01157 32 EYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTE 111 (378)
T ss_pred CCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHhCCHHHHHHHHHHHhC
Confidence 3467899999999987 555 55543332 1133333322 2444456778999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCC---CcceEEEE
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFI 151 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~---~~g~~~fl 151 (547)
|++++++++|||++|||+.++.|+|+.+ +|+|+|| |+|+|+++ +..||+++|+|++.+++. ..++.+|+
T Consensus 112 G~~~~~~a~tEp~~gs~~~~~~t~a~~~--~~g~~l~-----G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~~~l 183 (378)
T cd01157 112 EPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN-----GQKMWITN-GGKANWYFLLARSDPDPKCPASKAFTGFI 183 (378)
T ss_pred CCeeEEEEecCCCCCCchhcCeEEEEEc--CCEEEEe-----eEEEeecC-CccCCEEEEEEEeCCcccCCCCCceEEEE
Confidence 9999999999999999999999999987 7899999 99999999 899999999999865322 35788999
Q ss_pred EeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHH
Q 008966 152 VQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR 231 (547)
Q Consensus 152 V~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r 231 (547)
|| .+.|||++.+.|.++| +++++++.+.|+||+||.+++|+. +|.++. .....+...|
T Consensus 184 v~-------~~~~gv~~~~~~~~~G---~~~~~s~~~~~~~v~Vp~~~~lg~------~~~g~~------~~~~~~~~~r 241 (378)
T cd01157 184 VE-------ADTPGIQPGRKELNMG---QRCSDTRGITFEDVRVPKENVLIG------EGAGFK------IAMGAFDKTR 241 (378)
T ss_pred Ec-------CCCCCeeccCcccccC---CCCCCceEEEeccEEECHHHcCCC------CCchHH------HHHHHHhhhH
Confidence 99 6789999999999999 999999999999999999999983 555544 5556677789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008966 232 QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAN 311 (547)
Q Consensus 232 ~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 311 (547)
+.+++.++|+++++++.+++|++.|+|||+ ||.+||.+|++|+++.+.+++++.+++.++..+++ .
T Consensus 242 ~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~ 307 (378)
T cd01157 242 PPVAAGAVGLAQRALDEATKYALERKTFGK-------LIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDS-------G 307 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCc-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C
Confidence 999999999999999999999999999999 99999999999999999999999999998776541 1
Q ss_pred CCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 312 DFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 312 ~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
. .....++++|.++++.+.++++.|+|++||.||+.+++++++|||++...+++|++++++..+++.+|+
T Consensus 308 ~-----~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (378)
T cd01157 308 R-----RNTYYASIAKAFAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377 (378)
T ss_pred C-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhc
Confidence 1 123456889999999999999999999999999999999999999999999999999999999999874
No 21
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=6.7e-47 Score=398.09 Aligned_cols=320 Identities=21% Similarity=0.286 Sum_probs=280.3
Q ss_pred HHHHHHHcCCC----HHH-Hhhhhhhc------------CCcc--hhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcccee
Q 008966 18 AWKRIIELRLS----EEE-ASMLRSSV------------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 78 (547)
Q Consensus 18 ~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~--~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~~ 78 (547)
+|+.+.+.||. |++ ||.+.+.. +.+. .+.+|..++...|..+|+++||++|+|++.+|+.+
T Consensus 64 ~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~ 143 (404)
T PLN02519 64 LWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHV 143 (404)
T ss_pred HHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCee
Confidence 69999999987 555 55443321 1233 34567767777899999999999999999999999
Q ss_pred eEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeecCCC
Q 008966 79 GCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLE 158 (547)
Q Consensus 79 g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r~~~ 158 (547)
+|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|++| +..||+++|+|++++++++.|+.+|+||
T Consensus 144 ~~~a~sEp~~gsd~~~~~t~a~~~--~~g~~ln-----G~K~~vs~-a~~ad~~~v~a~~~~~~~~~~~~~~lVp----- 210 (404)
T PLN02519 144 GALAMSEPNSGSDVVSMKCKAERV--DGGYVLN-----GNKMWCTN-GPVAQTLVVYAKTDVAAGSKGITAFIIE----- 210 (404)
T ss_pred EEEEecCCCcCCCcccceEEEEEe--CCEEEEE-----eEEEeecC-CCcCCEEEEEEEeCCCCCCCeeEEEEEe-----
Confidence 999999999999999999999987 7899999 99999998 8999999999998765555688999999
Q ss_pred CCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHHHHH
Q 008966 159 DHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADA 238 (547)
Q Consensus 159 ~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~~ 238 (547)
...|||++.+.|+++| +++++++.+.|+||+||.+++|+. +|.++. .....+...|+.+++.+
T Consensus 211 --~~~~Gv~~~~~~~~~G---~rgt~s~~v~f~~v~Vp~~~~lg~------~~~G~~------~~~~~~~~~r~~~aa~~ 273 (404)
T PLN02519 211 --KGMPGFSTAQKLDKLG---MRGSDTCELVFENCFVPEENVLGQ------EGKGVY------VMMSGLDLERLVLAAGP 273 (404)
T ss_pred --CCCCCeeccCcccccC---CCCCCeeEEEeCeEEecHHHcCCC------CCccHH------HHHHHHHHHHHHHHHHH
Confidence 6789999999999999 999999999999999999999984 454443 44556778899999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008966 239 SCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPE 318 (547)
Q Consensus 239 ~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (547)
+|+++++++.+++|++.|.|||. |+.++|.+|++|+++.+.+++++.+++.++..+++ .. .
T Consensus 274 lG~a~~al~~a~~~a~~R~~~g~-------pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~-------~~-~---- 334 (404)
T PLN02519 274 LGLMQACLDVVLPYVRQREQFGR-------PIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDN-------GK-V---- 334 (404)
T ss_pred HHHHHHHHHHHHHHHHhceeCCc-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-C----
Confidence 99999999999999999999998 89999999999999999999999999998876642 11 1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 319 AHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 319 ~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
....++.+|.++++.+.++++.+++++||+||+.+++++++|||++...+++|++++++..+++.+|+
T Consensus 335 ~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~ 402 (404)
T PLN02519 335 DRKDCAGVILCAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFK 402 (404)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhh
Confidence 12346778999999999999999999999999999999999999999999999999999999999986
No 22
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-46 Score=380.55 Aligned_cols=327 Identities=25% Similarity=0.320 Sum_probs=291.0
Q ss_pred HHHHHHHHHHcCCC----HHH-Hhhhhhh-----c-------CC--cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSS-----V-------DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~-----~-------~~--~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
....|+.++++|.. |++ .|.+..- + +. ++.++.|..+....|..+||++||++|||++++|
T Consensus 111 ~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg 190 (634)
T KOG0137|consen 111 EETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASG 190 (634)
T ss_pred chhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcC
Confidence 45568888888755 333 3333211 1 22 4455667777778899999999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCC----CCcceEEEE
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDG----QDHGVNGFI 151 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~----~~~g~~~fl 151 (547)
+.+++||+|||..|||+.++.|+|+.-|+++.|+|| |.|.||+| +..||+++|||++..++ ..+++++||
T Consensus 191 ~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LN-----G~Kiwisn-~g~Adif~VfAqt~~~~~~g~~k~k~T~Fl 264 (634)
T KOG0137|consen 191 KLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLN-----GSKIWISN-GGLADIFTVFAQTEVDPADGEVKRKITAFL 264 (634)
T ss_pred CccceEEEecCCCCcccccceeeeeecCCCCeEEEc-----CeeEEEec-CccceeeeeeeccccCCCCccccCceEEEE
Confidence 999999999999999999999999999999999999 99999999 99999999999998543 236899999
Q ss_pred EeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHH
Q 008966 152 VQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR 231 (547)
Q Consensus 152 V~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r 231 (547)
|+ ++..||+-++...|+| .+|++.+.|.|++|.||.+|+|| .+|.++. +....+..+|
T Consensus 265 ve-------r~~~Gvt~G~~e~k~G---iKgsnt~~v~f~~~ki~~envlG------~~G~G~k------va~nilnsgR 322 (634)
T KOG0137|consen 265 VE-------RDFGGVTNGPPEKKMG---IKGSNTAEVHFEGVKIPIENVLG------KPGDGFK------VAMNILNSGR 322 (634)
T ss_pred Ee-------ccccCccCCCchhhhc---ccccceeeeeeccccccHHHhcC------CCCcchH------HHHHHHccCC
Confidence 99 6789999999999999 99999999999999999999999 4899888 8888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008966 232 QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAN 311 (547)
Q Consensus 232 ~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 311 (547)
+.+++..+|.+++++..+..|+..|.|||. ++-+|..+|.+++.|....|+++++.+......|+
T Consensus 323 ~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~-------~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~-------- 387 (634)
T KOG0137|consen 323 FGMAAALLGLMKRIIEEAADYATNRTQFGK-------KLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDE-------- 387 (634)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhcceecCc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc--------
Confidence 999999999999999999999999999999 99999999999999999999999999987766542
Q ss_pred CCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 312 DFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 312 ~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
....+++.++++.|.++++.++.++++++|++||+||+.+.++++.+||++..+|+||+|++++..||.--+.
T Consensus 388 --~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~q 460 (634)
T KOG0137|consen 388 --VGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGLQ 460 (634)
T ss_pred --ccceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHHHH
Confidence 2346788999999999999999999999999999999999999999999999999999999999999875543
No 23
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-47 Score=401.08 Aligned_cols=322 Identities=22% Similarity=0.260 Sum_probs=279.4
Q ss_pred HHHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CC--cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHh
Q 008966 13 RKAAYAWKRIIELRLS----EEE-ASMLRSSV------------DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAY 73 (547)
Q Consensus 13 ~~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~--~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~ 73 (547)
..+.++|+.+.+.||. |++ ||.+.+.. +. +.++..|..++..++..+|+++||++|+|++.
T Consensus 68 ~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~ 147 (410)
T PTZ00461 68 HFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVL 147 (410)
T ss_pred CCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3456899999999987 555 55443221 11 23455676567778888999999999999999
Q ss_pred ccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEe
Q 008966 74 KMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 153 (547)
Q Consensus 74 ~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~ 153 (547)
+|++++|+++|||++|||+.++.|+|+++. +|+|+|| |.|+|++| +..||+++|+|++. .++.+|+||
T Consensus 148 ~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~-~gg~~L~-----G~K~~vs~-a~~Ad~~lv~a~~~-----~~~~~flVp 215 (410)
T PTZ00461 148 TGEHVGAMGMSEPGAGTDVLGMRTTAKKDS-NGNYVLN-----GSKIWITN-GTVADVFLIYAKVD-----GKITAFVVE 215 (410)
T ss_pred CCCeeEEEEecCCCCCCChHHCeEEEEEcC-CCeEEEE-----eEEEeECC-CccCCEEEEEEEeC-----CceEEEEEe
Confidence 999999999999999999999999999873 3589999 99999999 89999999999863 247899999
Q ss_pred ecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHH
Q 008966 154 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 233 (547)
Q Consensus 154 ~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~ 233 (547)
.+.|||++.+.|+++| +++++++.+.|+||+||.+++|++ +|.++. .....+...|+.
T Consensus 216 -------~~~~Gv~v~~~~~~~G---~r~~~~~~l~f~~v~Vp~~~~lg~------~g~g~~------~~~~~~~~~r~~ 273 (410)
T PTZ00461 216 -------RGTKGFTQGPKIDKCG---MRASHMCQLFFEDVVVPAENLLGE------EGKGMV------GMMRNLELERVT 273 (410)
T ss_pred -------CCCCCeecCCCCcccC---CCCCceEEEEEcceecCHHHhCCC------CCccHH------HHHHHHHHHHHH
Confidence 6789999999999999 999999999999999999999984 555544 556678889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008966 234 IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF 313 (547)
Q Consensus 234 ~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 313 (547)
+++.++|+++++++.+++|+++|+|||+ ||.++|.+|++|+++.+.+++++.+.+.++..++. .+
T Consensus 274 ~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~-------~~- 338 (410)
T PTZ00461 274 LAAMAVGIAERSVELMTSYASERKAFGK-------PISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHP-------GN- 338 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeecCc-------CHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CC-
Confidence 9999999999999999999999999998 99999999999999999999999999988765531 11
Q ss_pred CChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHH
Q 008966 314 STLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 387 (547)
Q Consensus 314 ~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 387 (547)
+....++++|.++++.+.++++.|+|++||+||+.+++++++|||++...+++|++++++..+++.+++.
T Consensus 339 ----~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 339 ----KNRLGSDAAKLFATPIAKKVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 1234577899999999999999999999999999999999999999999999999999999999998764
No 24
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=7.2e-47 Score=398.42 Aligned_cols=321 Identities=24% Similarity=0.326 Sum_probs=277.3
Q ss_pred HHHHHHHHHHHcCCCH----HHHhhhhhhc------------CCcc--hhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 14 KAAYAWKRIIELRLSE----EEASMLRSSV------------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~~----~~~~~~~~~~------------~~~~--~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
.+.++|+.+.+.||.. +.||.+.+.. +.+. .+.+|..++...|..+|+++||++|+|++.+|
T Consensus 61 ~p~~~~~~l~~~G~~~~~v~~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G 140 (412)
T PLN02526 61 FPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQL 140 (412)
T ss_pred CCHHHHHHHHHCCCCcCcccccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 4567999999999872 3354443321 1122 24557666677899999999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeec
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 155 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r 155 (547)
++++|+++|||++|||+.++.|+|+++ +|+|+|| |+|+|++| +..||+++|+|++..+ .++++|+||
T Consensus 141 ~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~gg~~ln-----G~K~~vs~-~~~Ad~~lv~a~~~~~---~~~~~flV~-- 207 (412)
T PLN02526 141 DTVACWALTEPDYGSDASSLNTTATKV--EGGWILN-----GQKRWIGN-STFADVLVIFARNTTT---NQINGFIVK-- 207 (412)
T ss_pred CeEEEEEecCCCCCCChhhCeeEEEEE--CCEEEEE-----EEEeeecC-CCccCEEEEEEEeCCC---CCeEEEEEc--
Confidence 999999999999999999999999998 6899999 99999999 8999999999997532 357899999
Q ss_pred CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966 156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 235 (547)
Q Consensus 156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~ 235 (547)
.+.|||++.+.|+++| +++++++.+.|+||+||++++|+. .+ .+. .....+...|+.++
T Consensus 208 -----~~~~Gv~~~~~~~~~G---~r~t~s~~v~f~~v~Vp~~~~l~~------~~-~~~------~~~~~~~~~r~~~a 266 (412)
T PLN02526 208 -----KGAPGLKATKIENKIG---LRMVQNGDIVLKDVFVPDEDRLPG------VN-SFQ------DTNKVLAVSRVMVA 266 (412)
T ss_pred -----CCCCCeEcCCCCCccC---cCCCCeeEEEEeeEEECHHHhCCC------cc-cHH------HHHHHHHHHHHHHH
Confidence 6789999999999999 999999999999999999999973 22 122 34456778999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966 236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 315 (547)
Q Consensus 236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (547)
+.++|+++++++.+++|++.|+|||+ ||.++|.+|++++++.+.+++++.++++++..+++ +..
T Consensus 267 a~~lG~a~~al~~a~~~a~~R~~fg~-------~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~-------~~~-- 330 (412)
T PLN02526 267 WQPIGISMGVYDMCHRYLKERKQFGA-------PLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYES-------GKM-- 330 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhCeeCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCC--
Confidence 99999999999999999999999998 99999999999999999999999999998876652 111
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHH
Q 008966 316 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 387 (547)
Q Consensus 316 ~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 387 (547)
....++++|+++++.+.++++.|+|+|||.||+.+++++|+|||++...+++|+++++++.++|.+++.
T Consensus 331 ---~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 331 ---TPGHASLGKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 133478999999999999999999999999999999999999999999999999999999999999864
No 25
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=8e-47 Score=394.55 Aligned_cols=324 Identities=23% Similarity=0.297 Sum_probs=282.3
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcc--hhHhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~--~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+.++|+.+.+.||. |++ ||.+.+.. +.++ .+..|..++...|..+|+++|+++|+|++.+
T Consensus 34 ~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~ 113 (376)
T cd01156 34 FPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLIS 113 (376)
T ss_pred CCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhC
Confidence 456789999999987 555 55443221 1233 3445666667789999999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEee
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 154 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~ 154 (547)
|++++++++|||++|||+.+++|+|+++ +++|+|| |+|+|++| +..||+++|+|++..+++..++.+|+||
T Consensus 114 G~~~~~~a~sEp~~gs~~~~~~t~a~~~--~~g~~l~-----G~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~- 184 (376)
T cd01156 114 GEHIGALAMSEPNAGSDVVSMKLRAEKK--GDRYVLN-----GSKMWITN-GPDADTLVVYAKTDPSAGAHGITAFIVE- 184 (376)
T ss_pred CCeeEEEEecCCCCCCChhhCeEEEEEe--CCEEEEE-----EEEEEecC-CCcCCEEEEEEEeCCCCCCCceEEEEEc-
Confidence 9999999999999999999999999987 7899999 99999999 8999999999998755445678899999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 234 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~ 234 (547)
...|||++.+.|+++| +++++++.|.|+||+||++++|+. .|.++. .....+...|+.+
T Consensus 185 ------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~ 243 (376)
T cd01156 185 ------KGMPGFSRAQKLDKLG---MRGSNTCELVFEDCEVPEENILGG------ENKGVY------VLMSGLDYERLVL 243 (376)
T ss_pred ------CCCCCeecCCcccccc---CCCCCceEEEeCceEecHHHcCCC------CCchHH------HHHHHHhhHHHHH
Confidence 6789999999999999 999999999999999999999984 455444 5566778899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008966 235 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 314 (547)
Q Consensus 235 ~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (547)
++.++|+++++++.+++|+++|+|||+ ||.++|.+|++++++.+.+++++.++++++..+++ +. .
T Consensus 244 aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~-------~~-~ 308 (376)
T cd01156 244 AGGPIGIMQAALDVAIPYAHQRKQFGQ-------PIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDR-------GN-M 308 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCc-------chHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-C
Confidence 999999999999999999999999998 99999999999999999999999999998876642 11 1
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 315 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 315 ~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
....++.+|.++++.+.++++.++++|||+||+.+++++++|||++...+++|++++++..+++.++|
T Consensus 309 ----~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 309 ----DPKDAAGVILYAAEKATQVALDAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 12346778999999999999999999999999999999999999999999999999999999998874
No 26
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=3e-46 Score=389.40 Aligned_cols=320 Identities=21% Similarity=0.218 Sum_probs=273.0
Q ss_pred HHHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchhHh-hhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 13 RKAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFTDL-HWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 13 ~~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~~~-h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
..+.++|+.+.+.||. |++ ||.+.+.. +.++++.. +..++...+..+|+++|+++|+|++.+
T Consensus 32 ~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~ 111 (372)
T TIGR03207 32 VLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMSYVNLLASLNGQILAQHARPEIAKPWLGQLIA 111 (372)
T ss_pred CCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 3567899999999986 555 55444322 12333322 123455678889999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCC-CCcceEEEEEe
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQ 153 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~-~~~g~~~flV~ 153 (547)
|+.++|+++|||++|||+.++.|+|+++ +|+|+|| |+|+|++| +..||+++|+|++.+++ +..++.+|+||
T Consensus 112 G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~ln-----G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp 183 (372)
T TIGR03207 112 GEALFAIALTEPRGGSDAARLRLRAERD--GDDYVLN-----GEKTSISA-ADQADAAVVFARTGSEAEGARGISAFLVP 183 (372)
T ss_pred CCeeEEEEecCCCCCcChhhCEEEEEEe--CCEEEEE-----EEEEEEcC-CCcCCEEEEEEEcCCCCCCCCceEEEEEc
Confidence 9999999999999999999999999987 7899999 99999999 89999999999976432 33578899999
Q ss_pred ecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHH
Q 008966 154 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 233 (547)
Q Consensus 154 ~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~ 233 (547)
.+.|||++. .|+++| +++++++.|.|+||+||.+++|+. ++.++. .....+...|+.
T Consensus 184 -------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~ 240 (372)
T TIGR03207 184 -------MDLPGITRN-RFDCHG---QRAIGRGSIFFENVRVPADHMLGN------EGQGFV------QVMQGFDFSRAL 240 (372)
T ss_pred -------CCCCCeecC-cchhcc---CCCCCeeEEEECceeccHHHcCCC------CChhHH------HHHHHHHHHHHH
Confidence 678999985 589999 999999999999999999999984 455443 445567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008966 234 IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF 313 (547)
Q Consensus 234 ~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 313 (547)
+++.++|+++++++.+++|+++|+|||+ ||.++|.+|++|+++.+.+++++.+++.++..+++ ..
T Consensus 241 ~a~~~~G~a~~al~~a~~~~~~R~~fg~-------~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~--------~~ 305 (372)
T TIGR03207 241 IGLQVLAVARAALDETWRYVAERQAFGK-------PLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDH--------GL 305 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCC-------chhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 9999999999999999999999999999 99999999999999999999999999998776541 11
Q ss_pred CChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHH
Q 008966 314 STLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARF 383 (547)
Q Consensus 314 ~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ 383 (547)
.....++++|.++++.+.++++.|+|++||.||+.+ +++|+|||++...+++|++++++.+|++.
T Consensus 306 ----~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 306 ----PHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 113457899999999999999999999999999999 99999999999999999999999999874
No 27
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=6.8e-46 Score=389.46 Aligned_cols=325 Identities=20% Similarity=0.255 Sum_probs=275.4
Q ss_pred HHHHHHHHHHcCCC----HHH-Hhhhhhhc---------CC----cchhHhhh--hhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSSV---------DE----PAFTDLHW--GMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~~---------~~----~~~~~~h~--~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+++|+.+.+.||. |++ ||.+.+.. +. +.++..+. ......|..+|+++|+++|+|++.+
T Consensus 43 ~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~ 122 (394)
T cd01155 43 IEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLD 122 (394)
T ss_pred HHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhC
Confidence 46889999999987 555 55543332 11 22332222 2233578899999999999999999
Q ss_pred cceeeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCC--CcEEEEEEEEccCC--CCcceEE
Q 008966 75 MEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV--STHAVVYARLITDG--QDHGVNG 149 (547)
Q Consensus 75 g~~~g~~a~TE~~-~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~--A~~~~V~A~~~~~~--~~~g~~~ 149 (547)
|++++|+++|||+ .|||+..+.|+|+++ +|+|+|| |+|+|+|| +.+ +|+++|+|++..++ +..++.+
T Consensus 123 G~~~~~~a~tE~~~~gsd~~~~~t~a~~~--~~g~~Ln-----G~k~~vs~-~~~~~a~~~~v~a~~~~~~~~~~~~~~~ 194 (394)
T cd01155 123 GKIRSAFAMTEPDVASSDATNIECSIERD--GDDYVIN-----GRKWWSSG-AGDPRCKIAIVMGRTDPDGAPRHRQQSM 194 (394)
T ss_pred CCeEEEEEeCCCCCCCCchhhCEEEEEEE--CCEEEEE-----EEEEEEcC-CCCCCCCEEEEEEEeCCCcCCCCCceEE
Confidence 9999999999997 589999999999988 7899999 99999998 644 78999999986542 2357889
Q ss_pred EEEeecCCCCCCCCCCeEEccCCCCccccccCC--ccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHH
Q 008966 150 FIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNT--MDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTM 227 (547)
Q Consensus 150 flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~--~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l 227 (547)
|+|| .+.|||++.+.|+++| +++ ++++.|.|+||+||.+++|+. +|.++. .....+
T Consensus 195 flVp-------~~~~Gv~i~~~~~~~G---~r~~~t~s~~v~f~dv~Vp~~~~lg~------~~~g~~------~~~~~~ 252 (394)
T cd01155 195 ILVP-------MDTPGVTIIRPLSVFG---YDDAPHGHAEITFDNVRVPASNLILG------EGRGFE------IAQGRL 252 (394)
T ss_pred EEEe-------CCCCCeEeeccccccC---CCCCCCCeeEEEEccEEecHHHcCCC------CChHHH------HHHHHh
Confidence 9999 6789999999999999 997 578899999999999999983 555544 566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008966 228 VYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQR 307 (547)
Q Consensus 228 ~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~ 307 (547)
...|+..++.++|+++++++.+++|++.|+|||. ||.++|.+|++|+++.+.+++++.+++.++..+++.
T Consensus 253 ~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~-------~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~--- 322 (394)
T cd01155 253 GPGRIHHCMRLIGAAERALELMCQRAVSREAFGK-------KLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTV--- 322 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC-------cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---
Confidence 7899999999999999999999999999999998 999999999999999999999999999988766521
Q ss_pred hhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 308 LQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
. ..+....++++|+++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++.++++.++|
T Consensus 323 ----~---~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~~ 394 (394)
T cd01155 323 ----G---NKAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMELK 394 (394)
T ss_pred ----C---CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHhC
Confidence 1 01234668899999999999999999999999999999999999999999999999999999999998853
No 28
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=8.1e-46 Score=386.57 Aligned_cols=324 Identities=27% Similarity=0.340 Sum_probs=282.9
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CC--cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV------------DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~--~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+.+.|+.+.+.||. |++ ||.+.... .. +..+.+|..++...+..+|+++|+++|++++.+
T Consensus 31 ~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 110 (373)
T cd01158 31 FPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLAT 110 (373)
T ss_pred CCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 467799999999987 555 55432221 12 234566776677788999999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEee
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 154 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~ 154 (547)
|+.++++++|||++||++..++|+|+++ +++|+|| |+|+|++| +.+||+++|+|++..+++..++.+|+||
T Consensus 111 G~~~~~~a~se~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~vsg-~~~ad~~lv~a~~~~~~~~~~~~~~lvp- 181 (373)
T cd01158 111 GEKIGAFALSEPGAGSDAAALKTTAKKD--GDDYVLN-----GSKMWITN-GGEADFYIVFAVTDPSKGYRGITAFIVE- 181 (373)
T ss_pred CCeEEEEEecCCCCCCCHHHCEeEEEEe--CCEEEEe-----eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceEEEEEc-
Confidence 9999999999999999999999999988 7899999 99999999 8999999999987655445678899999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 234 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~ 234 (547)
...|||++.+.|+++| +++++++.+.|+||+||.+++|+. .|.++. .....+..+|+.+
T Consensus 182 ------~~~~gv~i~~~~~~~G---~~g~~s~~v~~~~v~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~ 240 (373)
T cd01158 182 ------RDTPGLSVGKKEDKLG---IRGSSTTELIFEDVRVPKENILGE------EGEGFK------IAMQTLDGGRIGI 240 (373)
T ss_pred ------CCCCCeecCCcccccc---cCCCCceEEEeCcEEecHHHcCCC------CCchHH------HHHHHHHHHHHHH
Confidence 6789999999999999 999999999999999999999984 444443 4556677889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008966 235 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 314 (547)
Q Consensus 235 ~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (547)
++.++|+++++++.+++|+++|+|||. |+.++|.+|++++++.+.+++++.+++.++..++. .
T Consensus 241 ~a~~lG~a~~~l~~~~~~~~~R~~~g~-------~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~-------~--- 303 (373)
T cd01158 241 AAQALGIAQAALDAAVDYAKERKQFGK-------PIADFQGIQFKLADMATEIEAARLLTYKAARLKDN-------G--- 303 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCC-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C---
Confidence 999999999999999999999999998 89999999999999999999999999988776541 1
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 315 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 315 ~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
.+....++.+|.++++.+.++++.|++++||.||+.+++++++|||++...+++|++++++.++++.+||
T Consensus 304 --~~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 304 --EPFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 1234567889999999999999999999999999999999999999999999999999999999999986
No 29
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=353.43 Aligned_cols=295 Identities=24% Similarity=0.330 Sum_probs=268.8
Q ss_pred cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEc
Q 008966 42 PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWW 121 (547)
Q Consensus 42 ~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~ 121 (547)
...+++|.++++.+|..+|+|+||++|||.+++|+.+|||++|||.||||+.+++|+|+||..+..|.|| |+|.|
T Consensus 133 rs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklN-----GsKtW 207 (432)
T KOG0138|consen 133 RSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLN-----GSKTW 207 (432)
T ss_pred hhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEEC-----Ceeee
Confidence 4578899999999999999999999999999999999999999999999999999999999877789999 99999
Q ss_pred ccCCCCCCcEEEEEEEEccCCCCcceEEEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccc
Q 008966 122 PGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQML 201 (547)
Q Consensus 122 i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL 201 (547)
|+| ++.||.+||+||...+++ +..|||. ++.||.+-..+..|++ ++++.+|.|.+|||+||+|++|
T Consensus 208 I~n-sp~aDl~vvwAr~~t~n~---I~GFi~~-------k~~~GL~apkI~gK~s---LRas~tG~Ilmd~V~VPeE~~L 273 (432)
T KOG0138|consen 208 ITN-SPMADLFVVWARCETDNK---IRGFILE-------KGMRGLSAPKIEGKFS---LRASATGMILMDGVEVPEENLL 273 (432)
T ss_pred ecC-CcccceEEEEEecccCCc---eeeEEEe-------cCCCCCcCCCcCCeee---eeecccCceeecCCcCChhhcC
Confidence 999 999999999999775443 7789999 8899999999999999 9999999999999999999999
Q ss_pred cccccccCCcceeccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHH
Q 008966 202 MRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLF 281 (547)
Q Consensus 202 ~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~ 281 (547)
- .-..+. --++.++..|..++-..+|++..+++++.+|...|+|||. |++.+|.+|.+|+
T Consensus 274 P-------g~~s~q------gpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~-------PLAanQL~Q~Kla 333 (432)
T KOG0138|consen 274 P-------GASSLQ------GPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGR-------PLAANQLIQKKLA 333 (432)
T ss_pred C-------CccccC------CchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCC-------chhHHHHHHHHHH
Confidence 4 222222 2356788899999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcc
Q 008966 282 PLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFA 361 (547)
Q Consensus 282 ~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~r 361 (547)
+|+..+.+.-.+++++..++|+. ......++..|.+.+-.+.+++..+|+..||.|.+.++-+-|.+-
T Consensus 334 dmltei~lgl~~clrl~rLkd~g------------~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyhv~rh~~ 401 (432)
T KOG0138|consen 334 DMLTEITLGLQACLRLGRLKDQG------------KATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYHVIRHAM 401 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcc------------cCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHHHHHHHc
Confidence 99999999999999998887642 112344788999999999999999999999999999999999999
Q ss_pred cccccccccchhHHHHHHHHHHHHHH
Q 008966 362 VYVPACTYEGDNIVLLLQVARFLMKT 387 (547)
Q Consensus 362 d~~~~~~~eG~~~vl~~~ia~~ll~~ 387 (547)
|..+..||||+-+++...++|.+-+.
T Consensus 402 nLE~vnTYEGThDihaLilGRaiTGi 427 (432)
T KOG0138|consen 402 NLEAVNTYEGTHDIHALILGRAITGI 427 (432)
T ss_pred CccceecccccchHHHHhhhhhhhhh
Confidence 99999999999999999999987653
No 30
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=1.2e-44 Score=381.79 Aligned_cols=329 Identities=21% Similarity=0.222 Sum_probs=273.6
Q ss_pred HHHHHHHHHcCCCH---HH---Hhhhh-----hhc-----CCcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccc---
Q 008966 16 AYAWKRIIELRLSE---EE---ASMLR-----SSV-----DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME--- 76 (547)
Q Consensus 16 ~~~~~~~~~~g~~~---~~---~~~~~-----~~~-----~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~--- 76 (547)
.++++.+.+.||.. +. ++... ..+ ....|+.+|. +++++|..+|+++| ++|||++.+|+
T Consensus 68 ~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~g~~~~-~~~l~~l~~g~~~~ 145 (418)
T cd01154 68 HALMRRLIEEGVINIEDGPAGEGRRHVHFAAGYLLSDAAAGLLCPLTMTD-AAVYALRKYGPEEL-KQYLPGLLSDRYKT 145 (418)
T ss_pred HHHHHHHHHcCCccCCchhhCCCcHHHHHHHHHHHHhcchhccCcHHHHH-HHHHHHHHhCcHHH-HHHHHHHhCCCccc
Confidence 56788888888762 12 11111 111 2245666665 57889999999886 46999999997
Q ss_pred -eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccC-CCCcceEEEEEee
Q 008966 77 -IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQL 154 (547)
Q Consensus 77 -~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~-~~~~g~~~flV~~ 154 (547)
+++|+++|||++|||+.+++|+|++++ +|+|+|| |+|+|+|+ + .||+++|+|++.++ ++..|+++|+||.
T Consensus 146 ~~~~~~~~TEp~~GSD~~~~~T~A~~~~-g~~~~Ln-----G~K~f~s~-a-~Ad~~lv~Art~~~~~~~~gls~flVp~ 217 (418)
T cd01154 146 GLLGGTWMTEKQGGSDLGANETTAERSG-GGVYRLN-----GHKWFASA-P-LADAALVLARPEGAPAGARGLSLFLVPR 217 (418)
T ss_pred chhheeeecCCCcccchhhCeEEEEECC-CCcEEEE-----EEEEEecC-c-ccCEEEEEEECCCCCCCCCcEEEEEEec
Confidence 899999999999999999999999874 6899999 99999998 7 99999999998754 3457899999995
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 234 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~ 234 (547)
+.++ ...|||+|.+.|+++| +++++++.|.|+|| ++++|| +.|.++. .+...+...|+.+
T Consensus 218 ~~~~--~~~~Gv~i~~~~~~~G---~r~~~~~ev~f~dv---~~~~lG------~~g~G~~------~~~~~l~~~R~~~ 277 (418)
T cd01154 218 LLED--GTRNGYRIRRLKDKLG---TRSVATGEVEFDDA---EAYLIG------DEGKGIY------YILEMLNISRLDN 277 (418)
T ss_pred cCCC--CCCCCeEecccccccC---CCCCCeEEEEecCc---CccccC------CCCccHH------HHHHHHHHHHHHH
Confidence 4321 1236999999999999 99999999999998 478888 4677665 6677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008966 235 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 314 (547)
Q Consensus 235 ~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (547)
++.++|.++++++.+++|+++|++||. ||+++|.+|++|+++.+.++++++++++++..+++.. .....
T Consensus 278 aa~~~G~a~~al~~a~~ya~~R~~fg~-------~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~----~~~~~ 346 (418)
T cd01154 278 AVAALGIMRRALSEAYHYARHRRAFGK-------PLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAA----ADKPV 346 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cCChh
Confidence 999999999999999999999999998 9999999999999999999999999999987765321 00000
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHH
Q 008966 315 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 385 (547)
Q Consensus 315 ~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 385 (547)
........++++|+++++.+.++++.|+|++||.||+.+++++++|||+++..+++|+++++++.++|.|-
T Consensus 347 ~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 347 EAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 00112346788999999999999999999999999999999999999999999999999999999999874
No 31
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-43 Score=386.42 Aligned_cols=342 Identities=18% Similarity=0.185 Sum_probs=277.4
Q ss_pred HHHHHHHHHcCCC----HHH-Hhhhhhhc---------C-CcchhHhh--hh-hhHHHHhcCCCHHHHHhHhHHHhccce
Q 008966 16 AYAWKRIIELRLS----EEE-ASMLRSSV---------D-EPAFTDLH--WG-MFVPAIKGQGTDEQHQKWLPLAYKMEI 77 (547)
Q Consensus 16 ~~~~~~~~~~g~~----~~~-~~~~~~~~---------~-~~~~~~~h--~~-l~~~~i~~~Gt~~q~~~~l~~i~~g~~ 77 (547)
.++|+.+.+.||. |++ ||.+.+.. . ...++.++ .. ....+|..+||++||++|||++.+|++
T Consensus 102 ~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~ 181 (622)
T PTZ00456 102 KEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEW 181 (622)
T ss_pred HHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCh
Confidence 4689999999998 555 55543221 1 11232222 11 234578999999999999999999999
Q ss_pred eeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCC----cEEEEEEEEccC-CCCcceEEEEE
Q 008966 78 IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITD-GQDHGVNGFIV 152 (547)
Q Consensus 78 ~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A----~~~~V~A~~~~~-~~~~g~~~flV 152 (547)
++|+++|||++|||+..++|+|+++. +|+|+|| |+|+||++ +.++ ++.+|+||+.++ ++.+|+++|+|
T Consensus 182 ~~t~alTEp~aGSD~~~l~T~A~~~g-dG~y~L~-----G~K~fIt~-g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlV 254 (622)
T PTZ00456 182 SGTMCLTEPQCGTDLGQVKTKAEPSA-DGSYKIT-----GTKIFISA-GDHDLTENIVHIVLARLPNSLPTTKGLSLFLV 254 (622)
T ss_pred hhhhhccCCccCCCcccCeeEEEECC-CCcEEEe-----eEEEEecC-CchhhccCcEEEEEEEecCCCCCCCceEEEEE
Confidence 99999999999999999999999873 2369999 99999998 7763 578999998753 34578999999
Q ss_pred eecCCCC---CCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHH
Q 008966 153 QLRSLED---HSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 229 (547)
Q Consensus 153 ~~r~~~~---~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~ 229 (547)
|....+. ....+||++.++.+|+| +++++++.+.|+| |.+++||. +++++. .+...|..
T Consensus 255 p~~~~~~~G~~~~~~gv~~~~~~~kmG---~~gs~t~~l~fd~---~~~~llG~------~~~Gl~------~~~~~mn~ 316 (622)
T PTZ00456 255 PRHVVKPDGSLETAKNVKCIGLEKKMG---IKGSSTCQLSFEN---SVGYLIGE------PNAGMK------QMFTFMNT 316 (622)
T ss_pred eCCCCCcCCCccCCCCeeecCcccccC---CCCCceEEEEeeC---hhHhhcCC------CChHHH------HHHHHHHH
Confidence 9543211 12347899999999999 9999999999999 47889983 666665 67788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC-----CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 230 VRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG-----GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDV 304 (547)
Q Consensus 230 ~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~-----~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~ 304 (547)
.|+.+++.++|++++|++.+++|+++|+||+...+ ....||+++|.+|++|+.+.+.+++++.++++++..++..
T Consensus 317 aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~ 396 (622)
T PTZ00456 317 ARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIH 396 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999854322 2356999999999999999999999999999998877642
Q ss_pred HHhhhcCCCCC----hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHH-HH
Q 008966 305 TQRLQANDFST----LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLL-LQ 379 (547)
Q Consensus 305 ~~~~~~~~~~~----~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~-~~ 379 (547)
... .+... .......++++|+++++.+.++++.|+|+|||+||+.+++++++|||++...++||+|++++ ..
T Consensus 397 ~~~---~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dl 473 (622)
T PTZ00456 397 AAA---KDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDF 473 (622)
T ss_pred ccc---cchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHH
Confidence 100 01100 11245678999999999999999999999999999999999999999999999999999997 58
Q ss_pred HHHHHH
Q 008966 380 VARFLM 385 (547)
Q Consensus 380 ia~~ll 385 (547)
++|.++
T Consensus 474 i~rkll 479 (622)
T PTZ00456 474 IGRKVL 479 (622)
T ss_pred HHHHhh
Confidence 899887
No 32
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=3.9e-45 Score=383.97 Aligned_cols=325 Identities=28% Similarity=0.373 Sum_probs=278.6
Q ss_pred HHHHHHHHHHcCCC----HHH-Hhhhhhh---------c---CC--cchhHhhhh---hhHHHHhcCCCHHHHHhHhHHH
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSS---------V---DE--PAFTDLHWG---MFVPAIKGQGTDEQHQKWLPLA 72 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~---------~---~~--~~~~~~h~~---l~~~~i~~~Gt~~q~~~~l~~i 72 (547)
+.++|+.+.+.||. |++ ||.+... + +. ..++.+|.. ....++..+|+++|+++|+|++
T Consensus 41 p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~ 120 (393)
T COG1960 41 PRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRL 120 (393)
T ss_pred HHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhh
Confidence 46789999999976 454 4422211 1 11 223333332 2334777899999999999999
Q ss_pred hccceeeEEeccCCCCCCCCCCCc-eEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccC-CCCcceEEE
Q 008966 73 YKMEIIGCYAQTELGHGSNVQGLE-TTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGF 150 (547)
Q Consensus 73 ~~g~~~g~~a~TE~~~Gsd~~~l~-TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~-~~~~g~~~f 150 (547)
.+|++++|+++|||++|||+.++. |+|+.+ +|+|+|| |+|+|+|| +..||+++|+|++..+ ++.+|+++|
T Consensus 121 ~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~--~g~~~ln-----G~K~~is~-~~~ad~~~v~Ar~~~~~~~~~gis~f 192 (393)
T COG1960 121 ASGELIGAFALTEPGAGSDLASLRTTAAVRD--DGDYVLN-----GQKIWISN-APVADWLLVLARTDPAPGKHKGISLF 192 (393)
T ss_pred hCCchhheeeccCCCCCcchhcCceeEEEec--CCCEEEE-----eEEEEEcC-CCCCCEEEEEEEcCCcccccCceEEE
Confidence 999999999999999999999998 666664 3449999 99999999 9999999999999876 456799999
Q ss_pred EEeecCCCCCCC-CCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHH
Q 008966 151 IVQLRSLEDHSP-LPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 229 (547)
Q Consensus 151 lV~~r~~~~~~~-~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~ 229 (547)
+|| .+ .|||++.+.+.+.| +++++++.+.|+||+||.+++|| +.|.++. .....+..
T Consensus 193 lV~-------~~~~~Gv~~~~~~~~~G---~r~~~~~~v~f~~v~vp~~~lig------~~~~g~~------~~~~~l~~ 250 (393)
T COG1960 193 LVP-------KDLTPGVSVGPILKKMG---LRGSATGEVFFDDVRVPAENLLG------EEGDGFK------IAMETLNV 250 (393)
T ss_pred EEe-------CCCCCCeeeccccCcCC---cCCCCeeEEEECCeeccHHHcCC------cCCchHH------HHHHhhch
Confidence 999 66 59999999976448 99999999999999999999998 4677766 77888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008966 230 VRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQ 309 (547)
Q Consensus 230 ~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 309 (547)
+|+.+++.++|++++|++.+++|++.|++||. |+++||.+|++|+++.+.+++++.+.++++...+..
T Consensus 251 ~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~-------~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~----- 318 (393)
T COG1960 251 ERLGIAAQALGIAEAALEEAVAYARERKQFGR-------PIADFQLVQFKLADMAAELEAARLLVLRAAELADAG----- 318 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC-------chhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 99999999999999999999999999999997 999999999999999999999999999877665421
Q ss_pred cCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHH
Q 008966 310 ANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 388 (547)
Q Consensus 310 ~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 388 (547)
. .....++++|.++++.+.++++.++|++||.||+.+++++|+|||++...+++|++++++..+++.+++..
T Consensus 319 --~-----~~~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~ 390 (393)
T COG1960 319 --D-----DAGAEAAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLP 390 (393)
T ss_pred --C-----CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhc
Confidence 1 12277999999999999999999999999999999999999999999999999999999999999998763
No 33
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1e-44 Score=380.08 Aligned_cols=319 Identities=17% Similarity=0.174 Sum_probs=265.9
Q ss_pred HHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccceee
Q 008966 17 YAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIG 79 (547)
Q Consensus 17 ~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~~g 79 (547)
++|+.+.++||. |++ ||.+.++. ..+.|+..+..+....|..+|+++||++|||++.+|+.++
T Consensus 44 ~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~ 123 (395)
T TIGR03204 44 TWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWW 123 (395)
T ss_pred HHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhcCCCccchhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchhe
Confidence 799999999987 555 55544332 2255655454455667888999999999999999999999
Q ss_pred EEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCC-CCcceEEEEEeecCCC
Q 008966 80 CYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLE 158 (547)
Q Consensus 80 ~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~-~~~g~~~flV~~r~~~ 158 (547)
|+++|||++|||+..+.|+|+.+ +++|+|| |+|+||++ +..||+++|+|++.+++ +..|+++|+||
T Consensus 124 ~~a~tEp~~gsd~~~~~t~a~~~--g~~~~Ln-----G~K~~vt~-a~~Ad~~lv~a~~~~~~~~~~g~~~flV~----- 190 (395)
T TIGR03204 124 CQGFSEPGSGSDLASLKTKAEKK--GDKWIIN-----GQKTWTTL-AQHADWIFCLCRTDPTAKKQMGISFILVD----- 190 (395)
T ss_pred EeEecCCCCCCChhhceEEEEEc--CCEEEEe-----eEEEeecC-CccCCeEEEEEEeCCCCCCCCCeEEEEEe-----
Confidence 99999999999999999999987 7899999 99999999 99999999999975432 34678999999
Q ss_pred CCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHHHHH
Q 008966 159 DHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADA 238 (547)
Q Consensus 159 ~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~~ 238 (547)
.+.|||++.+...+.| +.+++.|.|+||+||.+++|+. .+.++. +....+...|+.+++
T Consensus 191 --~~~~Gv~~~~~~~~~~-----~~~~~~v~f~~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~g~aa-- 249 (395)
T TIGR03204 191 --MKSKGITVRPIQTIDG-----GVEVNEVFFDDVEVPYENLVGE------ENKGWD------YAKFLLGNERTGIAR-- 249 (395)
T ss_pred --CCCCCeEecChhhccC-----CCceeEEEEcceEEcHHHcCCC------CCchHH------HHHHHHHHHHHHHHH--
Confidence 6789999987655432 5678999999999999999983 455554 566777888887765
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008966 239 SCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPE 318 (547)
Q Consensus 239 ~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (547)
+|.++++++.+++|++.|+|||+ ||++||.+|++|+++.+.+++++.+.++++..... .... .
T Consensus 250 ~g~a~~~l~~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~------~~~~----~ 312 (395)
T TIGR03204 250 VGVSKERIRRIKDLAAKVESGGK-------PVIEDAKFREKLAAVEIELKALELTQLRVVADEGK------HGKG----K 312 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCC----C
Confidence 79999999999999999999999 99999999999999999999999999998632110 0111 1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----------hcccccccc----CChhhhcccccccccccchhHHHHHHHHHHH
Q 008966 319 AHACTAGLKSLTTTATADGIEECRKL----------CGGHGYLCS----SGLPELFAVYVPACTYEGDNIVLLLQVARFL 384 (547)
Q Consensus 319 ~~~~~~~~K~~~t~~a~~~~~~~~~~----------~Gg~G~~~~----~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 384 (547)
....++++|.++++.+.++++.|+|+ +||.||+.+ ++++++|||++...+++|++++++..|+|.+
T Consensus 313 ~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~ 392 (395)
T TIGR03204 313 PNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAV 392 (395)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHH
Confidence 13468999999999999999999985 778899865 4699999999999999999999999999988
Q ss_pred HH
Q 008966 385 MK 386 (547)
Q Consensus 385 l~ 386 (547)
|+
T Consensus 393 l~ 394 (395)
T TIGR03204 393 LG 394 (395)
T ss_pred cC
Confidence 63
No 34
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=8.4e-44 Score=379.20 Aligned_cols=295 Identities=19% Similarity=0.188 Sum_probs=255.6
Q ss_pred HhhhhhhHHHHhcCCCHHHHHhHhHHHhccc-------------eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 008966 46 DLHWGMFVPAIKGQGTDEQHQKWLPLAYKME-------------IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 112 (547)
Q Consensus 46 ~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~-------------~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filnt 112 (547)
.+++......+..+|+++|+++|+|++.+|+ +++++++|||++|||+..++|+|+++. +|+|+||
T Consensus 134 p~~mT~~a~~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~-gg~w~Ln- 211 (538)
T PRK11561 134 PITMTFAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLA-DGSYRLV- 211 (538)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECC-CCeEEEE-
Confidence 3344445666777799999999999999997 456999999999999999999999853 6789999
Q ss_pred CCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecc
Q 008966 113 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 192 (547)
Q Consensus 113 p~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~ 192 (547)
|.|||+|+ ..||+++|+||+. .|+++|+||...++ ...+||++...++|+| ++++++++|.|+|
T Consensus 212 ----G~K~fiSa--~~AD~~lVlArt~-----~Gls~FlVp~~~p~--g~~nGv~i~rl~~klG---~r~~~t~ev~f~d 275 (538)
T PRK11561 212 ----GHKWFFSV--PQSDAHLVLAQAK-----GGLSCFFVPRFLPD--GQRNAIRLERLKDKLG---NRSNASSEVEFQD 275 (538)
T ss_pred ----EEEEEEEc--hhhCEEEEEEEEC-----CceEEEEEECCCCC--CCCCceEEeccccccc---CCCCceeEEEECC
Confidence 99999994 6799999999984 47999999932111 1134899999999999 9999999999999
Q ss_pred eecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccc
Q 008966 193 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 272 (547)
Q Consensus 193 v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~ 272 (547)
| .+++|| ++|+++. .+...+...|+.+++.++|++++|++.+++|++.|++||+ ||++
T Consensus 276 v---~~~llG------~~g~G~~------~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~-------~L~~ 333 (538)
T PRK11561 276 A---IGWLLG------EEGEGIR------LILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGK-------PLIE 333 (538)
T ss_pred H---HHHHCC------CCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------cccc
Confidence 9 488998 4777776 7778899999999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 008966 273 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 352 (547)
Q Consensus 273 ~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~ 352 (547)
+|.+|++|++|.+.+++++.++++++..+++. .+.....-....++++|.++++.+.+++++|+|++||+||+.
T Consensus 334 ~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~------~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~e 407 (538)
T PRK11561 334 QPLMRQVLSRMALQLEGQTALLFRLARAWDRR------ADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCE 407 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 99999999999999999999999999888631 011111124566788999999999999999999999999999
Q ss_pred cCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 353 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 353 ~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
+++++++|||++...++||++++++..++|.+.+
T Consensus 408 e~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~ 441 (538)
T PRK11561 408 ESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNK 441 (538)
T ss_pred CcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999876
No 35
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=2.1e-43 Score=361.67 Aligned_cols=284 Identities=29% Similarity=0.386 Sum_probs=256.7
Q ss_pred hhHHHHhcCCCHHHHHhHhHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCc
Q 008966 51 MFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVST 130 (547)
Q Consensus 51 l~~~~i~~~Gt~~q~~~~l~~i~~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~ 130 (547)
++..+|..+|+++|+++|++.+.+|++++|+++|||++|||+..+.|+|+++ +++|+|| |.|+|+++ +..||
T Consensus 43 ~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~-~~~ad 114 (327)
T cd00567 43 LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKD--GDGYVLN-----GRKIFISN-GGDAD 114 (327)
T ss_pred hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEe--CCEEEEE-----EEEEEecC-CccCC
Confidence 6778899999999999999999999999999999999999999999999988 6899999 99999998 89999
Q ss_pred EEEEEEEEccCC-CCcceEEEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccC
Q 008966 131 HAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTR 209 (547)
Q Consensus 131 ~~~V~A~~~~~~-~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~ 209 (547)
+++|+|++..++ +..++.+|+|| .+.|||++.+.|.++| +++++++.+.|+||+||.+++|+.
T Consensus 115 ~~lv~a~~~~~~~~~~~~~~~lvp-------~~~~Gv~~~~~~~~~G---~~~~~~~~v~~~~v~Vp~~~~l~~------ 178 (327)
T cd00567 115 LFIVLARTDEEGPGHRGISAFLVP-------ADTPGVTVGRIWDKMG---MRGSGTGELVFDDVRVPEDNLLGE------ 178 (327)
T ss_pred EEEEEEEeCCCCCCCCceEEEEEe-------CCCCCeEecccccccc---CCCCceEEEEECCEEecHHHcCCC------
Confidence 999999986543 34578899999 6679999999999999 999999999999999999999984
Q ss_pred CcceeccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHH
Q 008966 210 EGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYA 289 (547)
Q Consensus 210 ~G~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a 289 (547)
.+.+.. .....+...|+.+++.++|+++++++.+++|++.|+|||. |+.++|.+|++|+++.+.+++
T Consensus 179 ~~~g~~------~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~-------~~~~~~~vq~~la~~~~~~~~ 245 (327)
T cd00567 179 EGGGFE------LAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGK-------PLAEFQAVQFKLADMAAELEA 245 (327)
T ss_pred CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------ccccchHHHHHHHHHHHHHHH
Confidence 444433 4556777899999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccc
Q 008966 290 FRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTY 369 (547)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~ 369 (547)
++.+.+.++..+++ .. .+....++++|.++++.+.++++.|+++|||+||..+++++++|||++...++
T Consensus 246 ~~~~~~~a~~~~~~-------~~----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~ 314 (327)
T cd00567 246 ARLLLYRAAWLLDQ-------GP----DEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIA 314 (327)
T ss_pred HHHHHHHHHHHHhC-------CC----CcchHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcceee
Confidence 99999998876642 11 11456788999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHH
Q 008966 370 EGDNIVLLLQVAR 382 (547)
Q Consensus 370 eG~~~vl~~~ia~ 382 (547)
+|++++++.++++
T Consensus 315 ~G~~~~~~~~~~~ 327 (327)
T cd00567 315 EGTAEIQRLIIAR 327 (327)
T ss_pred cCHHHHHHHHhcC
Confidence 9999999988764
No 36
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.6e-43 Score=372.80 Aligned_cols=337 Identities=20% Similarity=0.215 Sum_probs=268.9
Q ss_pred HHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcccee
Q 008966 16 AYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 78 (547)
Q Consensus 16 ~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~~ 78 (547)
.++|+.+.+.||. |++ ||.+.+.. +.+.++..........|..+|+++|+++|+|++.+|+.+
T Consensus 39 ~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~G~~~ 118 (407)
T cd01153 39 KEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWT 118 (407)
T ss_pred HHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCee
Confidence 6789999999977 554 44432221 113332222223456788889999999999999999999
Q ss_pred eEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCC----cEEEEEEEEccCC-CCcceEEEEEe
Q 008966 79 GCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITDG-QDHGVNGFIVQ 153 (547)
Q Consensus 79 g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A----~~~~V~A~~~~~~-~~~g~~~flV~ 153 (547)
+|+++|||++|||+.+++|+|++++ +|+|+|| |+|+|+|| +.+| ++++|+|++.+++ +..++++|+||
T Consensus 119 ~~~a~tEp~~gsd~~~~~t~a~~~~-~ggy~l~-----G~K~~is~-~~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp 191 (407)
T cd01153 119 GTMCLTEPDAGSDLGALRTKAVYQA-DGSWRIN-----GVKRFISA-GEHDMSENIVHLVLARSEGAPPGVKGLSLFLVP 191 (407)
T ss_pred EEEEecCCCCCCCcccceEEEEECC-CCcEEEe-----eEEEEEeC-CCcccccccEEEEEEeCCCCCCCCCceEEEEEe
Confidence 9999999999999999999999874 4689999 99999998 7776 5788999875422 34578999999
Q ss_pred ecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHH
Q 008966 154 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 233 (547)
Q Consensus 154 ~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~ 233 (547)
.+..+ ...|||++.+.|+++| +++++++.+.|+||+|| +|+ .+|.++. .....+...|+.
T Consensus 192 ~~~~~--~~~~gv~i~~~~~~~G---~r~t~s~~v~f~~v~Vp---~lg------~~~~g~~------~~~~~l~~~r~~ 251 (407)
T cd01153 192 KFLDD--GERNGVTVARIEEKMG---LHGSPTCELVFDNAKGE---LIG------EEGMGLA------QMFAMMNGARLG 251 (407)
T ss_pred ccCcC--CCCCCeEeccchhccC---CCCCCeEEEEEcCEEEe---eeC------CCCccHH------HHHHHHHHHHHH
Confidence 43211 1238999999999999 99999999999999999 776 3565554 566778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCC-CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008966 234 IVADASCALSRAVCIATRYSAVRRQFGSKNG-GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND 312 (547)
Q Consensus 234 ~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~-~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 312 (547)
+++.++|+++++++.+++|+++|+|||++.. -+..++.++|.+|++|+++.+.+++++.+++++++.+++.... .+
T Consensus 252 ~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~---~~ 328 (407)
T cd01153 252 VGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERK---AT 328 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---cc
Confidence 9999999999999999999999999998421 1223489999999999999999999999999998877642100 00
Q ss_pred CCC-----hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHH-HHHH
Q 008966 313 FST-----LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLL-QVAR 382 (547)
Q Consensus 313 ~~~-----~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~-~ia~ 382 (547)
..+ .......++++|+++++.+.++++.++++|||.||..+++++++|||+++..+++|++++++. .+++
T Consensus 329 ~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~ 404 (407)
T cd01153 329 EGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGR 404 (407)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhc
Confidence 000 011245678999999999999999999999999999999999999999999999999998886 4544
No 37
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=2.7e-43 Score=399.67 Aligned_cols=290 Identities=19% Similarity=0.257 Sum_probs=258.5
Q ss_pred hhHHHHhcCCCHHHHHhHhHHHhccceeeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCC--C
Q 008966 51 MFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG--K 127 (547)
Q Consensus 51 l~~~~i~~~Gt~~q~~~~l~~i~~g~~~g~~a~TE~~-~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~--~ 127 (547)
+.+.+|..+|+++||++||+++.+|++++|+++|||+ +|||+.++.|+|+++ +|+|+|| |+|+|++| + .
T Consensus 524 ~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~--g~g~vLn-----G~K~~vtg-a~~~ 595 (822)
T PLN02876 524 GNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQ--GDSYVIN-----GTKWWTSG-AMDP 595 (822)
T ss_pred ccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEc--CCEEEEE-----eEEEEecC-CCCC
Confidence 3445788999999999999999999999999999997 789999999999987 7899999 99999998 6 4
Q ss_pred CCcEEEEEEEEccCC-CCcceEEEEEeecCCCCCCCCCCeEEccCCCCccccccCCc--cceeEEecceecCcccccccc
Q 008966 128 VSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM--DNGVLRFEHVRIPRNQMLMRV 204 (547)
Q Consensus 128 ~A~~~~V~A~~~~~~-~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~--~~~~v~f~~v~VP~~~lL~~~ 204 (547)
.||+++|+|++..++ +..++.+|+|| .+.|||++.+.|+++| ++++ +++.|.|+||+||.+++|+.
T Consensus 596 ~ad~~lv~ar~~~~~~~~~~~s~flV~-------~~~pGv~i~~~~~~~G---~r~~~~~~~~v~fd~V~Vp~~~~lg~- 664 (822)
T PLN02876 596 RCRVLIVMGKTDFNAPKHKQQSMILVD-------IQTPGVQIKRPLLVFG---FDDAPHGHAEISFENVRVPAKNILLG- 664 (822)
T ss_pred CCCEEEEEEecCCCCCCCCcceEEEEe-------CCCCCceeecccceec---cCCCCCCeeEEEEcceeechhheecC-
Confidence 799999999975432 33568899999 6789999999999999 9974 57899999999999999973
Q ss_pred ccccCCcceeccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHH
Q 008966 205 SQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLL 284 (547)
Q Consensus 205 ~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~ 284 (547)
+|.++. .....+..+|+.+++.++|++++|++.+++|+++|+|||+ ||.++|.+|++|+++.
T Consensus 665 -----~g~g~~------~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~ 726 (822)
T PLN02876 665 -----EGRGFE------IAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGK-------LIAQHGSFLSDLAKCR 726 (822)
T ss_pred -----CCchHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------chhhCHHHHHHHHHHH
Confidence 555544 5667788899999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccc
Q 008966 285 ASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYV 364 (547)
Q Consensus 285 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~ 364 (547)
+.+++++.+++.++..+++. .. .+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++
T Consensus 727 ~~leaar~l~~~aa~~~d~~------~~----~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar 796 (822)
T PLN02876 727 VELEQTRLLVLEAADQLDRL------GN----KKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATAR 796 (822)
T ss_pred HHHHHHHHHHHHHHHHHHcc------CC----cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhh
Confidence 99999999999998776521 00 123456889999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHH
Q 008966 365 PACTYEGDNIVLLLQVARFLMKT 387 (547)
Q Consensus 365 ~~~~~eG~~~vl~~~ia~~ll~~ 387 (547)
...+++|++++++..+++.+|+.
T Consensus 797 ~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 797 TLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred hcccccChHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 38
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1e-42 Score=363.85 Aligned_cols=319 Identities=20% Similarity=0.213 Sum_probs=263.4
Q ss_pred HHHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchhH-hhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 13 RKAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 13 ~~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~~-~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
..+.++|+.+.+.||. |++ ||.+.... +.+.++. .+..++...|..+|+++|+++||+++.+
T Consensus 35 ~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~ 114 (380)
T cd01152 35 EDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGIDLAGPTILAYGTDEQKRRFLPPILS 114 (380)
T ss_pred hHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHhCCHHHHHHHhHHHhC
Confidence 4566788999999977 555 55443321 2244432 2333456678999999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCC-CcceEEEEEe
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQ-DHGVNGFIVQ 153 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~-~~g~~~flV~ 153 (547)
|+.++++++||+++|||+..+.|+|+.+ +++|+|| |.|+|+++ +..||+++|+|++.++++ ..++.+|+||
T Consensus 115 g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~L~-----G~K~~it~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp 186 (380)
T cd01152 115 GEEIWCQGFSEPGAGSDLAGLRTRAVRD--GDDWVVN-----GQKIWTSG-AHYADWAWLLVRTDPEAPKHRGISILLVD 186 (380)
T ss_pred CchhheeecCCCCCCcchhhCeeeEEEc--CCeEEEe-----cEEEEEcC-ccccCEEEEEEEeCCCccCcCCeEEEEEe
Confidence 9999999999999999999999999987 7899999 99999999 899999999999765332 3578899999
Q ss_pred ecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHH
Q 008966 154 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 233 (547)
Q Consensus 154 ~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~ 233 (547)
...|||++.+.|.++| +++++.+.|+||+||.+++|+. +|.++. .....+...|+.
T Consensus 187 -------~~~~Gv~~~~~~~~~g-----~~~~~~l~f~~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~ 242 (380)
T cd01152 187 -------MDSPGVTVRPIRSING-----GEFFNEVFLDDVRVPDANRVGE------VNDGWK------VAMTTLNFERVS 242 (380)
T ss_pred -------CCCCceEeeehhhccC-----CCCcceEEecCcCcchhcccCC------CCchHH------HHHHHHHhcccc
Confidence 6689999999988766 4678999999999999999984 555544 555566677776
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008966 234 IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF 313 (547)
Q Consensus 234 ~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 313 (547)
+++. +..+++.+++|+.+|.+||+ ||.++|.+|++|+++.+.+++++.+++.+++.+++ ..
T Consensus 243 ~~~~----~~~~~~~a~~~a~~r~~~g~-------~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~-------~~- 303 (380)
T cd01152 243 IGGS----AATFFELLLARLLLLTRDGR-------PLIDDPLVRQRLARLEAEAEALRLLVFRLASALAA-------GK- 303 (380)
T ss_pred cchh----hhHHHHHHHHHHHHHHhcCC-------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CC-
Confidence 5544 44455566788888999998 99999999999999999999999999999887652 11
Q ss_pred CChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc--------CChhhhcccccccccccchhHHHHHHHHHHHH
Q 008966 314 STLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS--------SGLPELFAVYVPACTYEGDNIVLLLQVARFLM 385 (547)
Q Consensus 314 ~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~--------~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 385 (547)
.....++++|.++++.+.++++.|++++||.||+.+ +++++++||++...+++|++++++..+++.+|
T Consensus 304 ----~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~ 379 (380)
T cd01152 304 ----PPGAEASIAKLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLL 379 (380)
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhc
Confidence 123457899999999999999999999999999988 69999999999999999999999999999876
Q ss_pred H
Q 008966 386 K 386 (547)
Q Consensus 386 ~ 386 (547)
+
T Consensus 380 ~ 380 (380)
T cd01152 380 G 380 (380)
T ss_pred C
Confidence 3
No 39
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=4.7e-41 Score=351.02 Aligned_cols=338 Identities=17% Similarity=0.085 Sum_probs=267.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcch--hHhhhhhhHHHHhcCCCHHHHHh
Q 008966 7 LFKNTLRKAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAF--TDLHWGMFVPAIKGQGTDEQHQK 67 (547)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~--~~~h~~l~~~~i~~~Gt~~q~~~ 67 (547)
.+++....+.+.|+.+.+.||. |++ ||.+.+.. +.+.+ +.+|.. ....|..+|+++|+++
T Consensus 16 ~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~~~~l~~~g~~~~~~~ 94 (377)
T cd01163 16 ERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-FVEALLLAGPEQFRKR 94 (377)
T ss_pred hhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHHHHHhcCcHHHHHH
Confidence 3444445677899999999987 555 55443331 22333 345653 3467888999999999
Q ss_pred HhHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcce
Q 008966 68 WLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGV 147 (547)
Q Consensus 68 ~l~~i~~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~ 147 (547)
|++++.+|++++ .++||+++|+ +..+.|+++.+ +++|+|| |+|.|+|+ +..||+++|+|++.. .++
T Consensus 95 ~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~----~~~ 160 (377)
T cd01163 95 WFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRD--GGGYVLN-----GKKFYSTG-ALFSDWVTVSALDEE----GKL 160 (377)
T ss_pred HHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEec--CCEEEEe-----ceEEeecC-CccceEEEEEEEcCC----CcE
Confidence 999999999775 5999999886 66677777765 7899999 99999999 899999999998542 346
Q ss_pred EEEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHH
Q 008966 148 NGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTM 227 (547)
Q Consensus 148 ~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l 227 (547)
.+|+|| .+.|||++.+.|+++| +++++++.|.|+||+||.+++|+. .+.++. ....+
T Consensus 161 ~~~lV~-------~~~~Gv~i~~~~~~~G---~~~~~s~~v~f~~v~Vp~~~~lg~------~~~g~~-------~~~~~ 217 (377)
T cd01163 161 VFAAVP-------TDRPGITVVDDWDGFG---QRLTASGTVTFDNVRVEPDEVLPR------PNAPDR-------GTLLT 217 (377)
T ss_pred EEEEEe-------CCCCceeecCCccccc---CccCCcceEEEeeEEECHHHccCC------Cccccc-------ccccc
Confidence 789999 7789999999999999 999999999999999999999984 344332 01123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 228 VYVRQTIVADASCALSRAVCIATRYSAVRR-QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 306 (547)
Q Consensus 228 ~~~r~~~~a~~~g~~~~al~~a~~y~~~R~-qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~ 306 (547)
...|+.+++.++|+++++++.+++|+++|+ +||.+.. .++.++|.+|++|+++.+.+++++.+++.++..+++...
T Consensus 218 ~~~~l~~aa~~lG~a~~al~~~~~~~~~R~~~~g~~~~---~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~ 294 (377)
T cd01163 218 AIYQLVLAAVLAGIARAALDDAVAYVRSRTRPWIHSGA---ESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAA 294 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCc---cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788999999999999999999999995 7876321 168999999999999999999999999999988875421
Q ss_pred hhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 307 RLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
.....+.....+....++++|.++++.+.++++.|+|++||.||+.+++++++|||++...++...+ .....++.+++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~~ 373 (377)
T cd01163 295 AGTALTAEARGEAALAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYALN 373 (377)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhcC
Confidence 1000011111245667899999999999999999999999999999999999999999998777764 555567766653
No 40
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-35 Score=311.04 Aligned_cols=283 Identities=16% Similarity=0.108 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHHc-CCC----HHH-Hhhhhhhc------------CCcchh--HhhhhhhHHHHhcCCCHHHHHhHhHHH
Q 008966 13 RKAAYAWKRIIEL-RLS----EEE-ASMLRSSV------------DEPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLA 72 (547)
Q Consensus 13 ~~~~~~~~~~~~~-g~~----~~~-~~~~~~~~------------~~~~~~--~~h~~l~~~~i~~~Gt~~q~~~~l~~i 72 (547)
....++.+.+.++ ||. |++ ||.+.+.. +.+.++ ..|..+....|..+||++||++|||++
T Consensus 50 ~~~~~~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~l 129 (520)
T PTZ00457 50 SLLEQIRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAM 129 (520)
T ss_pred HHHHHHHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3345556577888 876 555 66554332 112233 356556667888899999999999999
Q ss_pred hccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEcc----C-C--CCc
Q 008966 73 YKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT----D-G--QDH 145 (547)
Q Consensus 73 ~~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~----~-~--~~~ 145 (547)
++|+.++++|+|| +.|||+.++.|+|+++. +|+|+|| |+|.|+ + +..||+++|+|++.+ + + +..
T Consensus 130 asGe~i~A~AltE-~aGSD~a~i~TtA~~~~-gg~wvLN-----G~K~~t-~-g~~Ad~~lV~Art~~~~~~~~g~~~~~ 200 (520)
T PTZ00457 130 SDGTIMMGWATEE-GCGSDISMNTTKASLTD-DGSYVLT-----GQKRCE-F-AASATHFLVLAKTLTQTAAEEGATEVS 200 (520)
T ss_pred hCCCcEEEEEeCC-CCCCccccceeEEEEcC-CCeEEEE-----EEEEEE-c-CchhcEEEEEeecCCcccccccccCcC
Confidence 9999999999999 99999999999999864 4579999 999976 6 889999999999853 1 1 125
Q ss_pred ceEEEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHH
Q 008966 146 GVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYG 225 (547)
Q Consensus 146 g~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~ 225 (547)
|+++|+|| .+.|||++++ +.|.|||| |.+++|| ..|.++. ....
T Consensus 201 git~FlV~-------~dapGVtv~~---------------~eV~FddV--P~~~vLG------~~g~G~~------~a~~ 244 (520)
T PTZ00457 201 RNSFFICA-------KDAKGVSVNG---------------DSVVFENT--PAADVVG------VVGEGFK------DAMI 244 (520)
T ss_pred ceEEEEEE-------CCCCceEEec---------------CEEEECCC--CHHHhCC------CCCchHH------HHHH
Confidence 79999999 7789999953 38999997 9999998 3677666 6777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 226 TMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT 305 (547)
Q Consensus 226 ~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~ 305 (547)
.+..+|+.+++.++|+++++++.+++|+. +|.+|++|++|.+.+++++++++.+++.+|+
T Consensus 245 ~L~~~Rl~~aA~~vGia~~ale~av~ya~------------------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~-- 304 (520)
T PTZ00457 245 TLFTEQYLYAASLLGIMKRVVQELRGSNA------------------EEGATDTVASFACAMYAMESTLYALTANLDL-- 304 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 88899999999999999999999999974 3789999999999999999999999998863
Q ss_pred HhhhcCCCCChhhHHHHHHhHHHHHH---HHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHH
Q 008966 306 QRLQANDFSTLPEAHACTAGLKSLTT---TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLL 377 (547)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~K~~~t---~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~ 377 (547)
...+.+..++++|.|++ +.++.++++++| .++++++++||++.++++||+|++|+
T Consensus 305 ---------g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 305 ---------PTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred ---------CCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence 11356788999999999 888888888877 89999999999999999999999999
No 41
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=2.4e-36 Score=314.74 Aligned_cols=333 Identities=13% Similarity=0.023 Sum_probs=255.0
Q ss_pred HHHHHHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchhHh-hhhhhHHHHhcCCCHHHHHhHhHH
Q 008966 10 NTLRKAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFTDL-HWGMFVPAIKGQGTDEQHQKWLPL 71 (547)
Q Consensus 10 ~~~~~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~~~-h~~l~~~~i~~~Gt~~q~~~~l~~ 71 (547)
+....+.++|+.+.+.||. |++ ||.+.+.. +.++++.. ..++....+..+++++|++.|++.
T Consensus 19 ~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (370)
T cd01159 19 RARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHSRMLAAFPPEAQEEVWGDG 98 (370)
T ss_pred HcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhCCHHHHHHHhCCC
Confidence 3334567899999999977 555 55443321 22333321 123555677788999999888764
Q ss_pred HhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEE
Q 008966 72 AYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFI 151 (547)
Q Consensus 72 i~~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~fl 151 (547)
. .+.+.++ .++.|+|+++ +|+|+|| |.|.|||+ +..||+++|+|++..+++..++.+|+
T Consensus 99 ~-~~~~~g~------------~~~~t~A~~~--~~gy~ln-----G~K~~it~-~~~ad~~~v~a~~~~~~~~~~~~~~l 157 (370)
T cd01159 99 P-DTLLAGS------------YAPGGRAERV--DGGYRVS-----GTWPFASG-CDHADWILVGAIVEDDDGGPLPRAFV 157 (370)
T ss_pred C-CceEEee------------ecCCceeEEe--CCeEEEe-----ccccCccC-CCcCceeEeeeECCCCCCCCcceEEE
Confidence 2 1111111 2467889887 7899999 99999998 89999999999985443446789999
Q ss_pred EeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHH
Q 008966 152 VQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR 231 (547)
Q Consensus 152 V~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r 231 (547)
|| .+ ||++.+.|+++| +++++++.+.|+||+||.+++|+.-......+.+...+ . .....+.+.|
T Consensus 158 V~-------~~--Gv~~~~~~~~~G---~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~--~-~~~~~~~~~~ 222 (370)
T cd01159 158 VP-------RA--EYEIVDTWHVVG---LRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTP--V-YRMPLRQVFP 222 (370)
T ss_pred EE-------hH--HCEEeccccccc---ccccCCCcEEEcceEcCccceecccccccCCCCCCCCc--c-ccCchHHHHH
Confidence 99 44 999999999999 99999999999999999999997411000001111000 0 0112345678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008966 232 QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAN 311 (547)
Q Consensus 232 ~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 311 (547)
+.+++.++|+++++++.+++|++.|.+|+... .||.++|.+|++|+++.+.+++++.+++.+++.+++.... .
T Consensus 223 ~~~aa~~lG~a~~~l~~~~~~~~~R~~~~~~g----~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~---~ 295 (370)
T cd01159 223 LSFAAVSLGAAEGALAEFLELAGKRVRQYGAA----VKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALA---G 295 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccCCCc----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 89999999999999999999999999984311 1899999999999999999999999999999988764211 1
Q ss_pred CCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchh-HHHHHHHHHHHHH
Q 008966 312 DFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMK 386 (547)
Q Consensus 312 ~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~-~vl~~~ia~~ll~ 386 (547)
+ ....+....++++|.++++.+.++++.+++++||.||..+++++|+|||++...+++|++ ++++..++|.+|+
T Consensus 296 ~-~~~~~~~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 296 G-PIDVEERARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 1 111344567889999999999999999999999999999999999999999999999999 9999999998874
No 42
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=282.01 Aligned_cols=289 Identities=20% Similarity=0.296 Sum_probs=258.5
Q ss_pred HHHhcCCCHHHHHhHhHHHhccceeeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCC-CCCcE
Q 008966 54 PAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG-KVSTH 131 (547)
Q Consensus 54 ~~i~~~Gt~~q~~~~l~~i~~g~~~g~~a~TE~~-~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~-~~A~~ 131 (547)
..|..||++|||.+||.++..|++..|||||||. ..||..++++..+++ ++.|+|| |.|||+||.+ +-|..
T Consensus 90 Evl~rYGseeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~--~~~YvIN-----g~KWw~sga~~PkCrv 162 (392)
T KOG1469|consen 90 EVLHRYGSEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRD--GDSYVIN-----GKKWWISGAGDPKCRI 162 (392)
T ss_pred eehhhhCCHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEc--CCEEEEe-----cceeeecCCCCCceEE
Confidence 3578999999999999999999999999999998 788999999999988 8999999 9999999843 45889
Q ss_pred EEEEEEEccCC--CCcceEEEEEeecCCCCCCCCCCeEEccCCCCccccccCCc--cceeEEecceecCccccccccccc
Q 008966 132 AVVYARLITDG--QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM--DNGVLRFEHVRIPRNQMLMRVSQV 207 (547)
Q Consensus 132 ~~V~A~~~~~~--~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~--~~~~v~f~~v~VP~~~lL~~~~~v 207 (547)
++++.+++... ++...++.||| .+.|||.|...-...| +... +..+|.|+|||||..|||-.
T Consensus 163 ~i~mGkt~~~~~~rhkQqSmiLVp-------M~TpGvkiiRpltVfG---~~DapgGH~Ei~F~~VrVP~~NmlLG---- 228 (392)
T KOG1469|consen 163 AIFMGKTDNTSASRHKQQSMILVP-------MNTPGVKIIRPLTVFG---YTDAPGGHFEIHFENVRVPATNMLLG---- 228 (392)
T ss_pred EEEecccCCCccchhhcccEEEEe-------cCCCCeeEeeeeeeec---cccCCCCcceEEEEEEEeeccceeec----
Confidence 99999988753 33456789999 7789999998888888 6543 46799999999999998863
Q ss_pred cCCcceeccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHH
Q 008966 208 TREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASA 287 (547)
Q Consensus 208 ~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~ 287 (547)
+|.++. +..+.+..+|+..|.-.+|.+.+|+++..+.+..|..||+ ++..+.++.+-|+..-..+
T Consensus 229 --eGrGFE------IaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk-------~l~q~~s~~~diA~sRvei 293 (392)
T KOG1469|consen 229 --EGRGFE------IAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGK-------KLVQHGSVAHDIAESRVEI 293 (392)
T ss_pred --CCCcce------eeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-------hhhhcchHHHHHHHHHhHh
Confidence 788888 7888899999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccc
Q 008966 288 YAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPAC 367 (547)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~ 367 (547)
+.+|.++.+++..+|.. ..+......+|.|..+...+..+++.++|.|||.|.+.+.++.++|.-++..+
T Consensus 294 EqaRLLvLkAAh~mD~~----------G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lr 363 (392)
T KOG1469|consen 294 EQARLLVLKAAHSMDTL----------GNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLR 363 (392)
T ss_pred hhhhhhhhhhhhhhhhh----------cchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEE
Confidence 99999999998887643 11445667899999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHH
Q 008966 368 TYEGDNIVLLLQVARFLMKTV 388 (547)
Q Consensus 368 ~~eG~~~vl~~~ia~~ll~~~ 388 (547)
+..|..++++..+|+.-++.-
T Consensus 364 iadgPd~vhL~ai~~le~~~~ 384 (392)
T KOG1469|consen 364 IADGPDEVHLSAIAKLELRDQ 384 (392)
T ss_pred eccCCCccchhhhhhhhHHHH
Confidence 999999999999999877653
No 43
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=99.91 E-value=1.1e-23 Score=197.41 Aligned_cols=125 Identities=30% Similarity=0.528 Sum_probs=117.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhh----cCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 008966 422 DWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPI 497 (547)
Q Consensus 422 ~~~~~~~l~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~~~~~~~~la~a~~~~~~~~~f~~~v~~~~~~~~~k~v 497 (547)
||.||++++++|++|+++++..+++++++ +++.+++||+++++++++|+||+++++++.|++.|+..+.++++++|
T Consensus 1 d~~~~~~l~~a~~~r~~~ll~~~~~~l~~~~~~g~~~~~awn~~~~~l~~~a~Ah~e~~i~~~f~~~i~~~~~~~~~~~v 80 (187)
T PF01756_consen 1 DLLDPEFLLQAFEHRAARLLQRAAQKLQKLMKSGKSPFEAWNDCSVQLVRAAKAHAERYILEQFIEAIQSSCADPEVRQV 80 (187)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHSSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSG-SSTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHH
Confidence 68899999999999999999999999854 67889999999999999999999999999999999933899999999
Q ss_pred HHHHHHHHhHHHHHhhhhhHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 008966 498 LEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 546 (547)
Q Consensus 498 L~~L~~LyaL~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l~~~Lrp~~ 546 (547)
|++||.||+|+.|++++|+|+++||||++|++.|++++.+||.+|||++
T Consensus 81 L~~L~~Lyal~~i~~~~g~fl~~g~ls~~~~~~l~~~i~~l~~~lrp~a 129 (187)
T PF01756_consen 81 LRQLCQLYALSIIEENAGDFLEHGYLSPEQIKALRKAIEELCAELRPNA 129 (187)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTSS-HHHHHHHHHHHHHHHHHHGGGH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCcCCHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999985
No 44
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.86 E-value=1.7e-20 Score=198.57 Aligned_cols=249 Identities=8% Similarity=0.052 Sum_probs=189.1
Q ss_pred HhcCCCHH--HHHhHhHHHhccceeeEEeccCCCC-CC----CCCCCce--EEEEeCCCCeEEEecCCCCceeEcccCCC
Q 008966 56 IKGQGTDE--QHQKWLPLAYKMEIIGCYAQTELGH-GS----NVQGLET--TATFDPQTDEFVIHSPTLTSSKWWPGGLG 126 (547)
Q Consensus 56 i~~~Gt~~--q~~~~l~~i~~g~~~g~~a~TE~~~-Gs----d~~~l~T--tA~~d~~~~~filntp~~~G~K~~i~~l~ 126 (547)
+..+|++- -..+|+..+....+..+.++|.|-. -| ....... ..+. .+++||||| |.|.|+|+ +
T Consensus 118 ~~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve-~~~dGiVV~-----GaK~~~T~-~ 190 (477)
T TIGR02309 118 FGKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVE-QTDKGVIVR-----GARMTATF-P 190 (477)
T ss_pred HhhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEE-EcCCCEEEe-----CHHHhhhh-c
Confidence 35566653 3468999999999999999999852 12 1112222 3332 337899999 99999998 7
Q ss_pred CCCcEEEEEEEEccCCCC-cc--eEEEEEeecCCCCCCCCCCeEEccCCCCccccccCCc-----------cceeEEecc
Q 008966 127 KVSTHAVVYARLITDGQD-HG--VNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM-----------DNGVLRFEH 192 (547)
Q Consensus 127 ~~A~~~~V~A~~~~~~~~-~g--~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~-----------~~~~v~f~~ 192 (547)
.||.++|++++...++. .+ ..+|+|| .+.|||++....+++| .++. ..+.|.|||
T Consensus 191 -~ad~~~V~~~~~~~~~~~~~~ya~~F~VP-------~dtpGl~~i~r~~~~~---~~~~~D~plssrfde~da~vvFDd 259 (477)
T TIGR02309 191 -IADEILIFPSTVLKAGAEKDPYALAFAIP-------TNTPGLHFVCREALDG---GDSPFDHPLSSRFEEMDALVIFDD 259 (477)
T ss_pred -ccceEEEeccCCCCCccCCCCeEEEEEee-------CCCCceEEEeCCccCC---CCCcccCccccccCCCeEEEEeCc
Confidence 99999999987664332 33 5789999 8899999998888888 7765 679999999
Q ss_pred eecCcccc--ccccccccCCcceeccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccc
Q 008966 193 VRIPRNQM--LMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQV 270 (547)
Q Consensus 193 v~VP~~~l--L~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i 270 (547)
|+||.+++ +|.. ..-|.++. .+ ..++..+..++|.+..+++.++.|+.. .+|+. ++
T Consensus 260 V~VPwe~VF~~g~~---e~a~~~f~---------~~--~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~-------gi 317 (477)
T TIGR02309 260 VLVPWERIFILGDV---ELCNNAYA---------AT--GAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGI-------GA 317 (477)
T ss_pred eeccHHHhhhcCCH---HHHHHHHH---------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-------Cc
Confidence 99999999 6621 00033222 11 122456788899999999999999998 89999 89
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Q 008966 271 IDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGY 350 (547)
Q Consensus 271 ~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~ 350 (547)
.++|.+|.+|+++++..++++++.+.+....+. ............++++|.++++...++. +|+|.+||.|+
T Consensus 318 ~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~-------~~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~ 389 (477)
T TIGR02309 318 DGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKE-------NAYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGL 389 (477)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-------CCCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcE
Confidence 999999999999999999999999988765431 1111111225668999999999999995 99999999999
Q ss_pred cc
Q 008966 351 LC 352 (547)
Q Consensus 351 ~~ 352 (547)
..
T Consensus 390 ~~ 391 (477)
T TIGR02309 390 IT 391 (477)
T ss_pred Ee
Confidence 64
No 45
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.85 E-value=2.5e-20 Score=168.51 Aligned_cols=145 Identities=27% Similarity=0.217 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 222 LLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 301 (547)
Q Consensus 222 ~~~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~ 301 (547)
++...+..+|+.+++.++|.++.+++.+++|+..|++||+ |+.++|.++++|+++.+.+++++++++++...+
T Consensus 6 ~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~-------~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~ 78 (150)
T PF00441_consen 6 VALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGK-------PLAEHPAVRRRLADMAARLEAMRALVYRAARRL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------cccchhhhHHHHHhhccchhhhhcccccccccc
Confidence 7778899999999999999999999999999999999998 999999999999999999999999999998876
Q ss_pred HHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHH
Q 008966 302 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVA 381 (547)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia 381 (547)
++ +. .....++++|.++++.+.++++.|++++||.||..+++++++++|++...+++|++++++.+||
T Consensus 79 ~~--------~~----~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia 146 (150)
T PF00441_consen 79 DA--------GQ----NDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIA 146 (150)
T ss_dssp HT--------TS----STHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHH
T ss_pred cc--------cc----ccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHH
Confidence 52 11 1267788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 008966 382 RFLM 385 (547)
Q Consensus 382 ~~ll 385 (547)
+.+|
T Consensus 147 ~~~l 150 (150)
T PF00441_consen 147 RRLL 150 (150)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 46
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.44 E-value=1.6e-13 Score=99.94 Aligned_cols=51 Identities=33% Similarity=0.487 Sum_probs=46.1
Q ss_pred EEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEE
Q 008966 80 CYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL 138 (547)
Q Consensus 80 ~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~ 138 (547)
|||+|||++|+|+..++|+|+++ +++|+|| |.|+|+++ +..||+++|+||+
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~--~~~~~L~-----G~K~~v~~-~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRD--GDGYVLN-----GEKRFVSN-APDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEE--TTEEEEE-----EEEEEEET-TTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecc--cceEEEe-----eEEEEECC-cCccCEEEEEEEE
Confidence 79999999999999999999999 7889999 99999999 9999999999997
No 47
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.41 E-value=2.3e-12 Score=114.21 Aligned_cols=133 Identities=17% Similarity=0.049 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008966 232 QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAN 311 (547)
Q Consensus 232 ~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 311 (547)
+.+++.++|++++|++.+++|++.|...+. ..++.+.|.+|.+|+++.+.+++++...+..+..+++.... +
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~-----~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~---g 72 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASG-----GAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADA---G 72 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----TSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----CCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---c
Confidence 357899999999999999999998877222 11899999999999999999999999999998887765432 2
Q ss_pred CCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchh
Q 008966 312 DFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN 373 (547)
Q Consensus 312 ~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~ 373 (547)
+. ..++........|.++++.+.++++.+++.+||.|+...++++|+|||+.....+...|
T Consensus 73 ~~-~~~~~~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~~ 133 (134)
T PF08028_consen 73 EE-LTPEERARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPALN 133 (134)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG-
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCcccC
Confidence 22 23566778888999999999999999999999999999999999999999988776543
No 48
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=99.16 E-value=6.6e-11 Score=103.42 Aligned_cols=78 Identities=44% Similarity=0.682 Sum_probs=63.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCCC----HHHH----hhhhhhcCCcchhHhhhhhhHHHHhcCCCHHHHHhHhHHH
Q 008966 1 MLSRKELFKNTLRKAAYAWKRIIELRLS----EEEA----SMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLA 72 (547)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~----~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i 72 (547)
||||+|+|+.++++..++++.+.+++|. +++. .....+++.+.|+++|++||+++|..+||+||+++|+|++
T Consensus 40 ~lsr~e~~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a 119 (125)
T PF14749_consen 40 FLSREERYERALRKARRLIKLLKQLGWDDNQDPDDAFMIGLLMYVLIDEGLPLGLHFGMFIPTIMGQGTEEQQAKWLPKA 119 (125)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHTT-----SHHHHHHH--HHHHHHT---THHHHHHTHHHHHHHHS-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6899999999999999999999999994 4442 2446778999999999999999999999999999999999
Q ss_pred hcccee
Q 008966 73 YKMEII 78 (547)
Q Consensus 73 ~~g~~~ 78 (547)
.+.+||
T Consensus 120 ~~~~Ii 125 (125)
T PF14749_consen 120 ENYEII 125 (125)
T ss_dssp HTTSS-
T ss_pred HCCccC
Confidence 999875
No 49
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.68 E-value=3.5e-06 Score=86.82 Aligned_cols=252 Identities=16% Similarity=0.160 Sum_probs=147.8
Q ss_pred CCCHH--HHHhHhHHHhccceeeEEeccCCCCC-C----CCC--CCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCC
Q 008966 59 QGTDE--QHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQ--GLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS 129 (547)
Q Consensus 59 ~Gt~~--q~~~~l~~i~~g~~~g~~a~TE~~~G-s----d~~--~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A 129 (547)
+|++- --.+|+..+.......+-|+|.|-.- | ... .+-...+. ..++|.|++ |.|..+|+ +..+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVve-e~~dGIVVr-----GAK~~aT~-~a~t 197 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVE-ETEDGIVVR-----GAKALATG-SALT 197 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEE-EecCceEEE-----ChHHHhcc-cccc
Confidence 66764 34589999999999999999998522 1 122 22333332 226899999 99999999 8899
Q ss_pred cEEEEE-EEEcc-CCCCcceEEEEEeecCCCCCCCCCCeEEccCCC-CccccccCCc------------cceeEEeccee
Q 008966 130 THAVVY-ARLIT-DGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGM-KFGNGAYNTM------------DNGVLRFEHVR 194 (547)
Q Consensus 130 ~~~~V~-A~~~~-~~~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~-~~G~~~~~~~------------~~~~v~f~~v~ 194 (547)
|..+|+ .+.-. ++++.-+ +|.|| .+.|||.+--... ..| .++.+. .-+.|.||||+
T Consensus 198 dei~V~Pt~~~~~~d~dfAv-~FaiP-------~dt~GvK~i~r~s~~~~-~~~~~g~fd~plssrfde~dailVfDdVf 268 (493)
T COG2368 198 DEIFVLPTRSMQEDDKDFAV-AFAIP-------MDTEGVKFICRRSYELG-RGAEGGPFDYPLSSRFDENDAILVFDDVF 268 (493)
T ss_pred ceEEEeeccccCCCCCceEE-EEEcc-------cCCCceEEEecCcchhh-cccCCCCCCCccccccccCceEEEecccc
Confidence 999988 33222 3333443 79999 8899987643221 111 001111 22559999999
Q ss_pred cCccccccccccccCCcceeccCchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccch
Q 008966 195 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTM-VYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 273 (547)
Q Consensus 195 VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l-~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~ 273 (547)
||-|+++- |.++..- ... .....+ .+.|...+..-.+-+.- -+...+...+. - =+.++
T Consensus 269 VPWERVf~-y~d~~~~--~~~------~~~~~Fa~~~~~q~~~~k~~k~d~--i~G~~~~~~~~-~---------Gv~~~ 327 (493)
T COG2368 269 VPWERVFI-YRDLERA--YAW------YAVSGFARLHRQQAVGRKAVKLDF--ILGAAYLIAET-N---------GVEEF 327 (493)
T ss_pred cchhheee-eccHHHH--HHH------HHHHHHHHHhhhhhhhhhHHHHHH--HHHHHHHHHHh-h---------Cccch
Confidence 99999885 1111100 000 111111 12221111111111110 01111111111 1 25789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 008966 274 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 353 (547)
Q Consensus 274 ~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~ 353 (547)
+.+|.+|.+|++..+.+.++...++..-. .......-.-...+...|.+++..--++.+...++.||.-.+..
T Consensus 328 ~hIq~kl~Emi~~~e~~~al~~Aa~~~a~-------~~~~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~lP 400 (493)
T COG2368 328 RHIQEKLGEMIALLELMWALSDAAAEEAQ-------KNPNGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGIITLP 400 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cCCCCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCceeecC
Confidence 99999999999999998887776654221 11111222335667889999999999999999999988544443
Q ss_pred C
Q 008966 354 S 354 (547)
Q Consensus 354 ~ 354 (547)
+
T Consensus 401 S 401 (493)
T COG2368 401 S 401 (493)
T ss_pred c
Confidence 3
No 50
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.64 E-value=3.6e-06 Score=89.67 Aligned_cols=240 Identities=12% Similarity=0.108 Sum_probs=140.2
Q ss_pred HHHhHhHHHhccceeeEEeccCCCC-CC----CCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEE-EEE
Q 008966 64 QHQKWLPLAYKMEIIGCYAQTELGH-GS----NVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV-YAR 137 (547)
Q Consensus 64 q~~~~l~~i~~g~~~g~~a~TE~~~-Gs----d~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V-~A~ 137 (547)
-..+|+..+....+..+.|+|.|-. -| .....-...+. ..++|.||+ |.|...|+ +..+|..+| ...
T Consensus 137 n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVe-e~~dGIVVr-----GAK~~aT~-a~~a~ei~V~~~~ 209 (519)
T TIGR02310 137 NARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEE-ERDDGIVVS-----GAKVVATN-SALTHYNFIGFGS 209 (519)
T ss_pred HHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEE-EcCCcEEEe-----CHHHHhcc-cchhcceeeccCc
Confidence 3568999999999999999998852 11 11122223332 236899999 99999998 899998888 444
Q ss_pred Ec--cCCCCcceEEEEEeecCCCCCCCCCCeEEccCCCCc----c-ccccC-------CccceeEEecceecCccccccc
Q 008966 138 LI--TDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF----G-NGAYN-------TMDNGVLRFEHVRIPRNQMLMR 203 (547)
Q Consensus 138 ~~--~~~~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~~~----G-~~~~~-------~~~~~~v~f~~v~VP~~~lL~~ 203 (547)
.. .++++..+ .|.|| .+.|||++--....- + +.... +-.-+.+.||||+||-|+++.-
T Consensus 210 ~~~~~~d~dyAv-aFavP-------~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~ 281 (519)
T TIGR02310 210 AQIIGDNDDFAL-MFIAP-------MDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIY 281 (519)
T ss_pred ccccCCCCCeEE-EEEeE-------cCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceec
Confidence 31 23333444 79999 789999886332211 0 00011 1123689999999999999851
Q ss_pred cccccCCcceec-cCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHH
Q 008966 204 VSQVTREGKYVQ-SNVPRQLLYGTMVYVR-QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLF 281 (547)
Q Consensus 204 ~~~v~~~G~~~~-~~~~~~~~~~~l~~~r-~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~ 281 (547)
.++..-..... .... ..+..-...| +..+-..+|++..+.+ + -| +..++.+|.+|+
T Consensus 282 -gd~e~~~~~~~~~~~~--~~~~~q~~~r~~~k~dfl~G~a~~~ae----~------~G---------~~~~~hVqekl~ 339 (519)
T TIGR02310 282 -RDFERCRTWAQYGGFA--RLFPMQACTRLAVKLDFITGLLHKALQ----C------TG---------VLEFRGVQAQMG 339 (519)
T ss_pred -CCHHHHHhHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH----H------hC---------cccchHHHHHHH
Confidence 11110000111 0000 0000001111 1112222333322221 1 12 457899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 008966 282 PLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 347 (547)
Q Consensus 282 ~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg 347 (547)
++++..+.+++....+...- ........-.-.....+.|.+.++.--++++.+.+.+||
T Consensus 340 Eli~~~E~~~a~~~Aa~~~~-------~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 340 EVVAWRNLFWTLTDAMAGSA-------YQWKNGAQLPSAQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred HHHHHHHHHHHHHHHHHhcC-------ccCCCCeEeeCHHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 99999999887766653211 111111112224446789999999999999999977765
No 51
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.60 E-value=0.00057 Score=66.84 Aligned_cols=123 Identities=14% Similarity=0.201 Sum_probs=74.6
Q ss_pred HHHhHhHHHhccceeeEEeccCCCC--CCCC-C---CCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEE
Q 008966 64 QHQKWLPLAYKMEIIGCYAQTELGH--GSNV-Q---GLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYAR 137 (547)
Q Consensus 64 q~~~~l~~i~~g~~~g~~a~TE~~~--Gsd~-~---~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~ 137 (547)
-..+|+..+....+..+.|++.|-. +... . .+-...+.. .++|.+|+ |.|...|+ +..+|.++|+--
T Consensus 124 n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee-~~dGIvVr-----GAK~~~T~-a~~adei~V~p~ 196 (264)
T PF11794_consen 124 NIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEE-TDDGIVVR-----GAKMLATG-APYADEILVFPT 196 (264)
T ss_dssp HHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE--SSEEEEE-----EEEEEEET-GCCSSEEEE--S
T ss_pred HHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEE-cCCCEEEe-----ChhhhhcC-CcccccEEEeec
Confidence 3568999999999999999999851 1111 1 122333322 26899999 99999997 999999999864
Q ss_pred Ecc--CCCCcceEEEEEeecCCCCCCCCCCeEEccCCCCcccc--ccC-------CccceeEEecceecCccccc
Q 008966 138 LIT--DGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG--AYN-------TMDNGVLRFEHVRIPRNQML 201 (547)
Q Consensus 138 ~~~--~~~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~--~~~-------~~~~~~v~f~~v~VP~~~lL 201 (547)
... ++++.- .+|.|| .+.||+++--........ .+. +-.-+.|.||||+||-|+++
T Consensus 197 ~~~~~~d~dyA-v~FavP-------~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 197 RAMRPGDEDYA-VAFAVP-------MNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp SSSTTCCGGG--EEEEEE-------TT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred cCCCCCCCceE-EEEEcc-------CCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 332 233343 479999 889999875443322200 011 01136899999999999875
No 52
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=97.58 E-value=3e-05 Score=66.07 Aligned_cols=64 Identities=30% Similarity=0.406 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CC--cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHh
Q 008966 13 RKAAYAWKRIIELRLS----EEE-ASMLRSSV------------DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAY 73 (547)
Q Consensus 13 ~~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~--~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~ 73 (547)
..+.++|+.+.+.||. |++ ||.+...+ +. ++.+++|.+++..+|..+||++||++|||++.
T Consensus 31 ~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~ 110 (113)
T PF02771_consen 31 RFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLA 110 (113)
T ss_dssp SCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHh
Confidence 4567889999999977 444 55443221 11 23467787788889999999999999999999
Q ss_pred ccc
Q 008966 74 KME 76 (547)
Q Consensus 74 ~g~ 76 (547)
+|+
T Consensus 111 ~Ge 113 (113)
T PF02771_consen 111 SGE 113 (113)
T ss_dssp TTS
T ss_pred CCC
Confidence 986
No 53
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=86.13 E-value=4.7 Score=38.21 Aligned_cols=75 Identities=12% Similarity=-0.013 Sum_probs=54.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 008966 270 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 349 (547)
Q Consensus 270 i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G 349 (547)
+..+|.+|.+|++++...+.+++.+..+... ...........-.....++|.+.++.--++++.+++++||.=
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~-------a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~l 116 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEAE-------AEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGL 116 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT--------EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhc-------CccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 5678999999999999999998887655321 111122222233455788999999999999999999999865
Q ss_pred cc
Q 008966 350 YL 351 (547)
Q Consensus 350 ~~ 351 (547)
.+
T Consensus 117 i~ 118 (205)
T PF03241_consen 117 IT 118 (205)
T ss_dssp TC
T ss_pred ee
Confidence 44
No 54
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=72.60 E-value=33 Score=37.48 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=53.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 008966 269 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 348 (547)
Q Consensus 269 ~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~ 348 (547)
.|.+-|.+..||+++...+||+-+.+.++.....+ + .+....+...+++||.+...++-..+-+++..
T Consensus 432 ~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~-------~----~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~- 499 (520)
T PTZ00457 432 QVPYQQLLLNRLGEAASLLYAASAVASRASMCVSK-------G----LPSAKVEGELASAFIAMAVSRARQLSEESCNV- 499 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------C----CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 78999999999999999999999888777554431 1 12222234678999999999988888888876
Q ss_pred cc
Q 008966 349 GY 350 (547)
Q Consensus 349 G~ 350 (547)
++
T Consensus 500 ~~ 501 (520)
T PTZ00457 500 GK 501 (520)
T ss_pred Cc
Confidence 54
No 55
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=47.08 E-value=2.8e+02 Score=30.49 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=55.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 008966 269 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 347 (547)
Q Consensus 269 ~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg 347 (547)
-|.+-|..-+||+..+..+|++-+...++...+.. .++....+.+.++++|++........|-.+-++
T Consensus 536 ~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~i-----------gl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 536 GIVEEQSVLQRLANVAINIYAMVAVISRASRSYSI-----------GLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 68889999999999999999999988888765531 224456667889999999999988888877766
No 56
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=30.72 E-value=1.4e+02 Score=22.94 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=27.7
Q ss_pred HhhhhhHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 008966 511 HKHLGDFVSTGCITAKQASLANEQLRSLYSQVFT 544 (547)
Q Consensus 511 ~~~~~~fl~~~~ls~~~~~~l~~~i~~l~~~Lrp 544 (547)
-+..|...+.|-++..|.....+.+...+..|+|
T Consensus 46 m~~iG~~w~~~~~~v~~e~~as~~~~~~l~~l~p 79 (79)
T PF02607_consen 46 MEEIGELWEEGEISVAQEHLASEAMRAALSILKP 79 (79)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhCC
Confidence 3456777888999999999999999999988887
No 57
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=27.01 E-value=1.4e+02 Score=26.46 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=22.3
Q ss_pred CCCcceEEEEEeecCCCCCCCCCCeEEccCCC
Q 008966 142 GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGM 173 (547)
Q Consensus 142 ~~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~ 173 (547)
+...-+.+-|+|++ .++.+.|.|+|....+
T Consensus 86 ~~~~~~~l~LIPL~--~G~L~lP~V~i~~~~~ 115 (147)
T PF12584_consen 86 GSEHEIPLTLIPLR--AGYLPLPKVEIRPYDP 115 (147)
T ss_pred CCeEEEEEEEEecc--cceecCCEEEEEeccC
Confidence 33345778899988 4567899999988763
No 58
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=26.83 E-value=1.5e+02 Score=24.03 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=29.1
Q ss_pred HHHHHhhhhhHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 008966 507 LHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 545 (547)
Q Consensus 507 L~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l~~~Lrp~ 545 (547)
+..|.+-..||.+.|-|+.+..+.+.+.+...+++--|+
T Consensus 34 ~~~i~~~~PWF~~eG~l~~~~W~kvG~~l~~~~~~~~~~ 72 (90)
T PF02337_consen 34 LSFIDKVCPWFPEEGTLDLDNWKKVGEELKRYYAEQGPE 72 (90)
T ss_dssp HHHHHHHTT-SS--SS-HHHHHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 356788889999999999999999999999877765554
No 59
>PF10799 YliH: Biofilm formation protein (YliH/bssR); InterPro: IPR020359 This entry represents Biofilm regulator, BssR (from the gene also known as yliH). It represses Escherichia coli biofilm formation in M9C glu and LB glu media but not in M9C and LB media. It may act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signalling pathways. It could also be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway [].
Probab=24.00 E-value=50 Score=27.59 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=24.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 008966 519 STGCITAKQASLANEQLRSLYSQVFTCV 546 (547)
Q Consensus 519 ~~~~ls~~~~~~l~~~i~~l~~~Lrp~~ 546 (547)
.-||+|-.+.+.||+.+-+||.++|.+.
T Consensus 30 AKGYMSVSEsdhLRdn~FeLc~e~r~~~ 57 (127)
T PF10799_consen 30 AKGYMSVSESDHLRDNLFELCREMRDKA 57 (127)
T ss_pred HcCccccchhhhHHHHHHHHHHHHHHhh
Confidence 4699999999999999999999998653
No 60
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=22.24 E-value=50 Score=34.27 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhccccccccCChhhhcccccccc--cccchhHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 008966 330 TTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPAC--TYEGDNIVLLLQVARFLMKTVSQLGYGNMPVG 399 (547)
Q Consensus 330 ~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~--~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~ 399 (547)
++..|.++--+.+|+||+|||+-+ .++....--+ -|+|+ ---+..+...+++..+++-....|++
T Consensus 154 AA~rA~~AGFDgVEIH~AhGYLi~----qFlsp~tN~RtD~YGGS-lENR~Rf~~EVv~aVr~~vg~~~~vg 220 (363)
T COG1902 154 AARRAKEAGFDGVEIHGAHGYLLS----QFLSPLTNKRTDEYGGS-LENRARFLLEVVDAVREAVGADFPVG 220 (363)
T ss_pred HHHHHHHcCCCEEEEeeccchHHH----HhcCCccCCCCCccCCc-HHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 445566666777899999999754 4444332223 47887 56677888899998888755444443
Done!