Query 008966
Match_columns 547
No_of_seqs 287 out of 1997
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 15:46:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ddh_A Acyl-COA oxidase; beta 100.0 3E-92 1E-96 779.3 55.4 541 1-546 53-603 (661)
2 1w07_A Acyl-COA oxidase; oxido 100.0 7.7E-90 2.6E-94 761.3 58.6 540 5-546 59-600 (659)
3 2z1q_A Acyl-COA dehydrogenase; 100.0 3.8E-57 1.3E-61 494.1 40.4 439 14-513 61-524 (577)
4 3owa_A Acyl-COA dehydrogenase; 100.0 3.1E-54 1.1E-58 470.9 39.8 448 13-513 65-546 (597)
5 2uxw_A VERY-long-chain specifi 100.0 2.4E-51 8.1E-56 449.4 41.2 329 15-389 81-433 (607)
6 2jif_A Short/branched chain sp 100.0 2.1E-52 7.2E-57 438.7 29.5 323 15-387 62-403 (404)
7 2d29_A Acyl-COA dehydrogenase; 100.0 3.7E-52 1.3E-56 434.9 29.9 324 15-387 40-386 (387)
8 1ukw_A Acyl-COA dehydrogenase; 100.0 2.5E-52 8.6E-57 434.9 28.4 323 14-386 37-378 (379)
9 2vig_A Short-chain specific ac 100.0 4.8E-52 1.7E-56 434.5 29.7 328 14-390 38-384 (391)
10 1egd_A Medium chain acyl-COA d 100.0 3.7E-52 1.3E-56 436.1 28.6 325 15-388 49-394 (396)
11 1buc_A Butyryl-COA dehydrogena 100.0 4E-52 1.4E-56 434.1 28.1 324 14-385 37-382 (383)
12 1ivh_A Isovaleryl-COA dehydrog 100.0 5E-52 1.7E-56 434.8 26.8 323 17-388 50-393 (394)
13 2dvl_A Acyl-COA dehydrogenase; 100.0 8.8E-52 3E-56 429.7 28.3 318 15-386 36-372 (372)
14 3pfd_A Acyl-COA dehydrogenase; 100.0 2.5E-52 8.6E-57 436.9 24.3 324 14-386 51-393 (393)
15 2pg0_A Acyl-COA dehydrogenase; 100.0 2E-51 6.7E-56 429.1 30.4 321 15-384 43-383 (385)
16 3r7k_A Probable acyl COA dehyd 100.0 1.2E-51 4.2E-56 433.0 27.3 321 14-384 61-401 (403)
17 3p4t_A Putative acyl-COA dehyd 100.0 2.7E-51 9.3E-56 430.4 28.4 322 14-384 58-399 (403)
18 1rx0_A Acyl-COA dehydrogenase 100.0 7.9E-51 2.7E-55 425.5 30.5 322 15-386 52-392 (393)
19 3ii9_A Glutaryl-COA dehydrogen 100.0 9.8E-52 3.4E-56 432.9 23.4 322 14-386 51-391 (396)
20 3nf4_A Acyl-COA dehydrogenase; 100.0 1.5E-51 5E-56 430.4 24.2 320 15-386 49-387 (387)
21 4hr3_A Putative acyl-COA dehyd 100.0 8.3E-51 2.8E-55 428.5 28.6 328 14-388 59-412 (415)
22 1r2j_A Protein FKBI; polyketid 100.0 5.6E-51 1.9E-55 422.7 25.4 320 13-386 24-363 (366)
23 2wbi_A Acyl-COA dehydrogenase 100.0 4E-50 1.4E-54 424.6 32.4 328 14-390 68-422 (428)
24 3sf6_A Glutaryl-COA dehydrogen 100.0 1.2E-50 4E-55 425.6 27.5 318 14-386 62-398 (403)
25 2ix5_A Acyl-coenzyme A oxidase 100.0 1.1E-50 3.7E-55 429.0 26.5 318 16-386 89-424 (436)
26 2eba_A Putative glutaryl-COA d 100.0 2E-50 7E-55 421.4 28.1 317 16-386 45-381 (385)
27 3swo_A Glutaryl-COA dehydrogen 100.0 1.9E-50 6.4E-55 423.6 26.6 317 15-386 59-393 (399)
28 3mpi_A Glutaryl-COA dehydrogen 100.0 6.1E-50 2.1E-54 419.6 23.6 319 16-384 40-382 (397)
29 1siq_A GCD, glutaryl-COA dehyd 100.0 2.3E-49 7.8E-54 414.5 27.5 320 15-386 47-384 (392)
30 3mkh_A Nitroalkane oxidase; ox 100.0 2.4E-48 8.3E-53 412.5 28.6 331 16-387 48-417 (438)
31 2c12_A Nitroalkane oxidase; ox 100.0 4.2E-46 1.4E-50 395.4 30.5 325 16-385 46-418 (439)
32 3mxl_A Nitrososynthase; flavin 100.0 6.1E-46 2.1E-50 389.0 22.1 328 14-386 40-393 (395)
33 3djl_A Protein AIDB; alpha hel 100.0 1.2E-44 4.2E-49 390.4 28.1 323 16-386 89-441 (541)
34 3m9v_A FAD-dependent oxidoredu 100.0 2.1E-44 7.2E-49 382.4 24.9 329 14-387 51-405 (439)
35 2or0_A Hydroxylase; APC7385, r 100.0 3.8E-44 1.3E-48 377.5 23.5 322 14-386 49-401 (414)
36 2rfq_A 3-HSA hydroxylase, oxyg 100.0 5.5E-44 1.9E-48 374.0 24.5 326 14-386 36-386 (394)
37 2jbr_A P-hydroxyphenylacetate 100.0 5.5E-44 1.9E-48 377.2 22.0 327 14-386 64-414 (422)
38 1u8v_A Gamma-aminobutyrate met 100.0 7.9E-34 2.7E-38 302.6 22.0 275 55-379 119-421 (490)
39 2yyk_A 4-hydroxyphenylacetate- 100.0 2.1E-33 7.2E-38 298.9 25.1 272 61-384 122-422 (481)
40 3hwc_A Chlorophenol-4-monooxyg 100.0 1.3E-28 4.6E-33 261.6 24.0 278 59-385 127-431 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 99.9 2.1E-21 7.2E-26 206.7 27.4 247 63-352 134-392 (517)
42 3owa_A Acyl-COA dehydrogenase; 85.2 6.8 0.00023 42.1 12.7 67 269-345 485-551 (597)
43 2uxw_A VERY-long-chain specifi 41.7 3E+02 0.01 29.2 13.8 88 269-387 509-596 (607)
44 3nrh_A Uncharacterized protein 38.5 20 0.00068 31.9 3.1 79 458-542 9-90 (182)
45 2lpy_A Matrix protein P10; GAG 23.5 61 0.0021 26.7 3.3 38 508-545 35-72 (124)
46 1bax_A M-PMV MA, M-PMV matrix 22.1 87 0.003 24.4 3.8 38 508-545 36-73 (94)
No 1
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=3e-92 Score=779.33 Aligned_cols=541 Identities=45% Similarity=0.765 Sum_probs=471.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCCCH-HHHhhhhhhcCC--cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccce
Q 008966 1 MLSRKELFKNTLRKAAYAWKRIIELRLSE-EEASMLRSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEI 77 (547)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~--~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~ 77 (547)
+++++|+++...++.+++.+.+.++|+.. .+......+++. +.|+.+|+++++++|..+||++|+++|||++.+|++
T Consensus 53 ~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~ 132 (661)
T 2ddh_A 53 FLTRSQRYEVAVKKSATMVKKMREYGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEI 132 (661)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTCCCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhccchhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCe
Confidence 47899999999999999988888888873 332224444443 788999999999999999999999999999999999
Q ss_pred eeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeecCC
Q 008966 78 IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSL 157 (547)
Q Consensus 78 ~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r~~ 157 (547)
++|||+|||+||||+.+++|+|++|+++|+|+||||+++|+|+||||++.+||+++|+|++.++++++|+++|+||+||.
T Consensus 133 ~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~ 212 (661)
T 2ddh_A 133 TGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREI 212 (661)
T ss_dssp CEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCT
T ss_pred eEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccc
Confidence 99999999999999999999999998889999999999999999998778999999999998776678999999999999
Q ss_pred CCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHHHH
Q 008966 158 EDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 237 (547)
Q Consensus 158 ~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~ 237 (547)
++|.+.|||+|+++|+|+| ++++++++|.||||+||++++|+++++|.++|.+..+...+ ..+..|..+|+.+++.
T Consensus 213 ~~~~~~pGV~v~~~~~k~G---l~g~~~~~v~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~-~~~~~l~~~R~~iaa~ 288 (661)
T 2ddh_A 213 GTHKPLPGITVGDIGPKFG---YEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK-LTYGTMVFVRSFLVGN 288 (661)
T ss_dssp TTCCBCTTEEEEECCCCSS---CTTCCCEEEEESSEEEEGGGBCCSSCEECTTCCEECCC---------CHHHHHHHHHH
T ss_pred cCCCCCCCeEEecCccccc---CCCCcceEEEeccEEECHHHhcCcccccCCCCceeccchHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999988887788886543333 6677888999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChh
Q 008966 238 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLP 317 (547)
Q Consensus 238 ~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (547)
++|++++|++++++|+..|+|||.+++.+|.||++||.+|++|+++++.++++++++++++..+++.....+.++.....
T Consensus 289 ~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~ 368 (661)
T 2ddh_A 289 AAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELP 368 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHCBCSCSSTTSCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhh
Confidence 99999999999999999999999877788999999999999999999999999999999998886543322223333335
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCC
Q 008966 318 EAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMP 397 (547)
Q Consensus 318 ~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~ 397 (547)
+.+..++++|+++++.+.++++.|+|+|||+||+.+++++++|||+++.+++||+|+++++++|+.+|+.+++..++...
T Consensus 369 ~~~~~aa~aK~~at~~a~~~~~~a~q~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~vl~~~iar~lL~~~~~~~~~~~~ 448 (661)
T 2ddh_A 369 ELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLV 448 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCcHHHHHHhcceeeEecCchHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999887777666
Q ss_pred ccccccccchh-HHhhhcC--CccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhh----hcCChHhHHHHHHHHHHHHHH
Q 008966 398 VGTTTYMGRAE-QLMQCHC--GVQKAEDWLNPSAILEAFEARAIRMSVACAQNLS----KFTNQEEGFAELAADLVEAAV 470 (547)
Q Consensus 398 ~~~~~~l~~~~-~~~~~~~--~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l~----~~~~~~~~~n~~~~~~~~la~ 470 (547)
.++++||.+.. .....++ ...+..++.|+++++++|++|+++++..++++++ ++++.+++||+++++++++|+
T Consensus 449 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~g~~~~~a~n~~~~~~~~~a~ 528 (661)
T 2ddh_A 449 GGMVSYLNDLPSQRIQPQQVAVWPTMVDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASE 528 (661)
T ss_dssp CGGGGGGGGCCC--------------CCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHH
T ss_pred chHHHHHHhhhhhhccccccccccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 67899998653 2211111 1134688999999999999999999998888874 456788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhhhhhHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 008966 471 AHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 546 (547)
Q Consensus 471 a~~~~~~~~~f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l~~~Lrp~~ 546 (547)
||+++++++.|++.|++ ++++++++||++||.||+|+.|+++++||+++||||++|++.|++.|.+||.+||||+
T Consensus 529 a~~~~~~~~~f~~~~~~-~~~~~~~~~L~~l~~L~~l~~i~~~~~~~l~~~~~s~~~~~~~~~~~~~l~~~lrp~a 603 (661)
T 2ddh_A 529 AHCHYVVVKVFSDKLPK-IQDKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQVNARILELLTLIRPNA 603 (661)
T ss_dssp HHHHHHHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 7888999999999999999999999999999999999999999999999999999985
No 2
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=7.7e-90 Score=761.32 Aligned_cols=540 Identities=81% Similarity=1.267 Sum_probs=472.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhhhhcCCcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccceeeEEecc
Q 008966 5 KELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQT 84 (547)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~~g~~a~T 84 (547)
++.+.+.+.+.-.+.....++|+...+.......++.+.++.+|+.+++++|..+||++||++|||++.+|++++|||+|
T Consensus 59 ~~~~~~~l~~~g~l~~~p~e~G~~~~~~~~v~e~~~~~~~~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~T 138 (659)
T 1w07_A 59 KELFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQT 138 (659)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCCCCHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECC
T ss_pred HHHHHHHHHHHHHHHHhHHHhCCCchHHHHHHHHhccchhhhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEec
Confidence 33344433333333333344554433322333445666668899889999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeecCCCCCCCCC
Q 008966 85 ELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLP 164 (547)
Q Consensus 85 E~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r~~~~~~~~p 164 (547)
||+||||+.+++|+|++|+++|+|+||||+++|+|+||+|++.+||+++|+|+++++++++|+++|+||+||.++|.+.|
T Consensus 139 Ep~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~~is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~p 218 (659)
T 1w07_A 139 ELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLP 218 (659)
T ss_dssp BTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCT
T ss_pred CCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEEeecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCC
Confidence 99999999999999999987899999999999999999986789999999999987666779999999999989999999
Q ss_pred CeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceecc-CchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008966 165 GITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQS-NVPRQLLYGTMVYVRQTIVADASCALS 243 (547)
Q Consensus 165 Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~-~~~~~~~~~~l~~~r~~~~a~~~g~~~ 243 (547)
||+|+++|+++|..++++++++.|.|+||+||++++|+++++|+++|.++.+ ...+ +.+..|..+|+.+++.++|+++
T Consensus 219 GV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~~~lLg~~~~v~~~g~~~~~~~~~~-~~~~~l~~~R~~~aa~~~G~a~ 297 (659)
T 1w07_A 219 NITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQ-LVYGTMVYVRQTIVADASNALS 297 (659)
T ss_dssp TEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBCCSSEEECTTCCEEECSSCGG-GCTTTTTHHHHHHHHHHHHHHH
T ss_pred CeEEecCccCccccccCCCCceEEEeccEEECHHHhcCCcCccCCCCceecCCccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999985557899999999999999999999999888888988764 2233 5567788999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008966 244 RAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACT 323 (547)
Q Consensus 244 ~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (547)
+|++++++|++.|+|||.+++.+|.||++||.+|++|+++++.+++++++.++++..+++.....+.++.....+.+..+
T Consensus 298 ~al~~a~~ya~~R~qfg~~~~~~e~pi~~~q~vq~rLa~~~a~~~a~~~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~~ 377 (659)
T 1w07_A 298 RAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACT 377 (659)
T ss_dssp HHHHHHHHHHHHCBCSCC---CCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccCCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhhhhHHHHH
Confidence 99999999999999999877778889999999999999999999999999999999887765544444433345789999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCCcccccc
Q 008966 324 AGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTY 403 (547)
Q Consensus 324 ~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~ 403 (547)
+++|+++++.+.++++.|+|+|||+||+.+++++++|||+++.++++|+|+++++++|+.+|+.+++..++.++.++++|
T Consensus 378 a~aK~~at~~a~~~~~~a~q~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~v~~~~iar~lL~~~~~~~~~~~~~~~~~~ 457 (659)
T 1w07_A 378 AGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAY 457 (659)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGGGBGGGSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHHTTTTTSCCCCGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccccCHHHHHHhcceeEEEeCChHHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777777789999
Q ss_pred ccchhHHhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 404 MGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIE 483 (547)
Q Consensus 404 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~~~~la~a~~~~~~~~~f~~ 483 (547)
|.+.......++...+..++.|+++++++|++|+++++..+++++++.++.+++||+++++++++|+||+++++++.|++
T Consensus 458 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~a~a~~~~~~~~~f~~ 537 (659)
T 1w07_A 458 MGRAAHLLQCRSGVQKAEDWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVSKFIA 537 (659)
T ss_dssp GGGHHHHTSCCCCCCSGGGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhccccccCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98766554333333335789999999999999999999999999987777889999999999999999999999999999
Q ss_pred HHhhcCC-CCChHHHHHHHHHHHhHHHHHhhhhhHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 008966 484 KLQQDIP-GKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 546 (547)
Q Consensus 484 ~v~~~~~-~~~~k~vL~~L~~LyaL~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l~~~Lrp~~ 546 (547)
.|++ ++ ++++++||++||.||+|+.|+++++||+++||||++|++.|++.|.+||.+||||+
T Consensus 538 ~~~~-~~~~~~~~~~l~~l~~l~~l~~i~~~~~~~l~~~~~s~~~~~~~~~~~~~l~~~lrp~a 600 (659)
T 1w07_A 538 KLEQ-DIGGKGVKKQLNNLCYIYALYLLHKHLGDFLSTNCITPKQASLANDQLRSLYTQVRPNA 600 (659)
T ss_dssp HTTS-CCCSTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHGGGH
T ss_pred HHHh-cCCChHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 76 89999999999999999999999999999999999999999999999999999985
No 3
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=3.8e-57 Score=494.05 Aligned_cols=439 Identities=19% Similarity=0.215 Sum_probs=351.3
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhh---------cCC----cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSS---------VDE----PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~---------~~~----~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
.+.++|+.+.+.||. |++ ||.+.+. +.. +..+.+|.+++..+|..+||++||++|||++++|
T Consensus 61 ~p~~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G 140 (577)
T 2z1q_A 61 LNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEELSGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASG 140 (577)
T ss_dssp GHHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHTTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHhhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 466899999999977 554 5544322 121 2335677777777899999999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeec
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 155 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r 155 (547)
++++|+++|||++|||+.+++|+|++++++++|+|| |+|+|||| +..||+++|+|+++ + .|+++|+||
T Consensus 141 ~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLn-----G~K~~it~-a~~Ad~~~V~Ar~~--g--~gis~flVp-- 208 (577)
T 2z1q_A 141 EWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILN-----GVKQWISN-AGFAHLFTVFAKVD--G--EHFTAFLVE-- 208 (577)
T ss_dssp SSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEE-----EEEEEEET-TTTCSEEEEEEEET--T--TEEEEEEEE--
T ss_pred CeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEE-----EEeeCCCC-CCccCEEEEEEEeC--C--CeeEEEEEe--
Confidence 999999999999999999999999998778899999 99999999 88999999999975 2 579999999
Q ss_pred CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966 156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 235 (547)
Q Consensus 156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~ 235 (547)
.+.|||++++.|+++| +++++++.|.|+||+||.+++|| ..|.++. .....+..+|+.++
T Consensus 209 -----~~~pGv~v~~~~~~~G---~~~~~~~~v~fddv~VP~~~llg------~~g~g~~------~~~~~l~~~R~~~a 268 (577)
T 2z1q_A 209 -----RDTPGLSFGPEEKKMG---IKASSTRQVILEDVKVPVENVLG------EIGKGHK------IAFNVLNVGRYKLG 268 (577)
T ss_dssp -----TTCTTEEECCCCCBSS---CTTSCEEEEEEEEEEEEGGGEES------CTTCTHH------HHHHHHHHHHHHHH
T ss_pred -----CCCCCeEecCCCCCCC---CCCCceeEEEecceeccHHHccC------CCCchHH------HHHHHHHHHHHHHH
Confidence 7789999999999999 99999999999999999999998 3677665 67778889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966 236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 315 (547)
Q Consensus 236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (547)
+.++|+++++++.+++|++.|+|||. ||++||.+|++|+++.+.+++++++.++++..+++... .+...
T Consensus 269 a~~~G~a~~al~~a~~ya~~R~qfg~-------pi~~~q~vq~~La~~~~~~~aar~~~~~aa~~~d~~~~----~~~~~ 337 (577)
T 2z1q_A 269 AGAVGGAKRALELSAQYATQRVQFGR-------PIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALL----GKKGP 337 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCBCSSS-------BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----ccccc
Confidence 99999999999999999999999998 99999999999999999999999999999888775421 11000
Q ss_pred ------hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHHH
Q 008966 316 ------LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 389 (547)
Q Consensus 316 ------~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~ 389 (547)
..+.+..++++|.++++.+.++++.|+|+|||+||+.+++++++|||+++.+++||+|++++.++++.+++...
T Consensus 338 ~~~~~~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~~l~~~~ 417 (577)
T 2z1q_A 338 EAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRRAL 417 (577)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTTTSCHHHHHHHTTGGGSCC--
T ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeecCCChHHHHHhhCcceeeeCcHHHHHHHHHHHHHHHHHh
Confidence 13456789999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred HhcCCCCCccccccccchh-HHhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCChHhHHHHHHHHHHHH
Q 008966 390 QLGYGNMPVGTTTYMGRAE-QLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEA 468 (547)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~~~~l 468 (547)
+ +. .+...++++.. .+.+ +. . ...+.+...+++.+.++....+..+..++.+... ..+..+.++
T Consensus 418 ~---~~--l~~~~~~~~~~~~~~~--~~-~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~------~~q~~l~~l 482 (577)
T 2z1q_A 418 K---GQ--LPLMQAAQRLQKELLE--PS-F-EEPEDLELHQVQNLKKLALMVAGLAVQKYGQGVE------EEQEVLGAV 482 (577)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHGGGGG------GCHHHHHHH
T ss_pred h---cC--CcHHHHHHHHHHHHcC--CC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHHHH
Confidence 2 11 11124444332 1111 10 1 2345556778888888888877777776643321 114678999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhh
Q 008966 469 AVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKH 513 (547)
Q Consensus 469 a~a~~~~~~~~~f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~ 513 (547)
|.+|++.+++..|+.+.++. .+. +..|-+++..+++..|+..
T Consensus 483 ad~~~~~~~~~~~l~r~~~~--~~~-~~~l~~~~~~~~~~~~~~~ 524 (577)
T 2z1q_A 483 ADILIDAYAAESALLRARRL--GGL-APVLARIYLAQALDRAQAG 524 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--cCc-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874 233 5556666666667777777
No 4
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=3.1e-54 Score=470.91 Aligned_cols=448 Identities=20% Similarity=0.266 Sum_probs=340.2
Q ss_pred HHHHHHHHHHHHcCCC----HHH-Hhhhhhhc---------CC----cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 13 RKAAYAWKRIIELRLS----EEE-ASMLRSSV---------DE----PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 13 ~~~~~~~~~~~~~g~~----~~~-~~~~~~~~---------~~----~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
..+.++|+.+.+.||. |++ ||.+.+.. +. +.++..|..+...+|..+||++||++|||++.+
T Consensus 65 ~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~~~~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~ 144 (597)
T 3owa_A 65 DRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAGGFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLAT 144 (597)
T ss_dssp HHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGGTHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 3467899999999987 555 66544332 11 233556776777778899999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEee
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 154 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~ 154 (547)
|++++|+++|||++|||+.+++|+|++++++++|+|| |+|+|||| +.+||+++|+|+++. .|+++|+||
T Consensus 145 Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLn-----G~K~~is~-a~~Ad~~lV~Art~~----~g~s~flV~- 213 (597)
T 3owa_A 145 GEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLN-----GEKQWITN-SAFADVFIVYAKIDG----EHFSAFIVE- 213 (597)
T ss_dssp TSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEE-----EEEEEEET-TTTCSEEEEEEEETT----TEEEEEEEE-
T ss_pred CCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEe-----eEEEEeCC-CccCCEEEEEEEeCC----CceEEEEEe-
Confidence 9999999999999999999999999998878899999 99999999 899999999999752 379999999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 234 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~ 234 (547)
.+.|||++++.|+++| +++++++.|.|+||+||.+++||. .|.++. +....+..+|+.+
T Consensus 214 ------~~~pGv~v~~~~~~~G---lrgs~t~~v~fddV~VP~~~lLG~------~g~G~~------~~~~~l~~~R~~~ 272 (597)
T 3owa_A 214 ------KDYAGVSTSPEEKKMG---IKCSSTRTLILEDALVPKENLLGE------IGKGHI------IAFNILNIGRYKL 272 (597)
T ss_dssp ------TTSTTEEECCCCCBSS---CTTSCEEEEEEEEEEEEGGGEESS------TTCHHH------HHHHHHHHHHHHH
T ss_pred ------CCCCCeEEeccccccc---CCCCCceEEEEeceeecHHHhcCc------ccchHH------HHHHhhHhHHHHH
Confidence 7789999999999999 999999999999999999999983 566655 6778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--
Q 008966 235 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND-- 312 (547)
Q Consensus 235 ~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~-- 312 (547)
++.++|+++++++.+++|++.|+|||. ||++||.+|++|+++.+.+++++.+++++++.+++........+
T Consensus 273 aa~~lG~a~~al~~a~~ya~~R~qfG~-------pi~~~q~vq~~LA~m~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~ 345 (597)
T 3owa_A 273 GVGTVGSAKRAVEISAQYANQRQQFKQ-------PIARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVK 345 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCeeCCc-------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 999999999999999999999999999 99999999999999999999999999999998876432100000
Q ss_pred C-----CChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHH
Q 008966 313 F-----STLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 387 (547)
Q Consensus 313 ~-----~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 387 (547)
. ....+.+..++++|.++++.+.++++.|+|+|||+||+.+++++++|||++...+++|+|++++..|++.+|+.
T Consensus 346 ~~~~~~~~~~~~~~~~s~aK~~ase~a~~v~~~a~qi~GG~G~~~e~~ler~~RDar~~~i~eGt~ei~r~~Ia~~ll~~ 425 (597)
T 3owa_A 346 DGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGTFLRK 425 (597)
T ss_dssp HCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccChHHHHHHHhhhhheeCcHHHHHHHHHHHHHHHH
Confidence 0 00114567899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHhcCCCCCccccccccchhHH---hhhcCCccccCCCCCH-HHHHHHHHHHHHHHHHHHHHHhhhcCChHhHHHHHHH
Q 008966 388 VSQLGYGNMPVGTTTYMGRAEQL---MQCHCGVQKAEDWLNP-SAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAA 463 (547)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~-~~l~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~ 463 (547)
+.+ ++.| ++.....+ .....+.......+.. ..+++....+....+..+.++.. ..+.+-+.
T Consensus 426 ~~k---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~q~ 491 (597)
T 3owa_A 426 AMK---GELP-----LLQKAQKLQEELMMMMPEEVGDEPLALQKYLVNNAKKIGLMVAGLAAQKYG------KALDKEQE 491 (597)
T ss_dssp HHT---TSSC-----HHHHHHHHHHHHTTC---CCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHG------GGGGGCHH
T ss_pred Hhc---CCcc-----hhHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhC------CcHHHHHH
Confidence 643 3322 12221111 1100000111111111 11222111111111112222221 23444567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-C-CCC---hHHHHHHHHHHHhHHHHHhh
Q 008966 464 DLVEAAVAHCQLIVVSKFIEKLQQDI-P-GKG---VKPILEILCHIYALHLVHKH 513 (547)
Q Consensus 464 ~~~~la~a~~~~~~~~~f~~~v~~~~-~-~~~---~k~vL~~L~~LyaL~~i~~~ 513 (547)
.+.++|..-++.+.++..+.+.++.. . ... ....|.+++..-+...|+..
T Consensus 492 ~l~~~ad~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (597)
T 3owa_A 492 ILVNIADIVSNLYAMESAVLRTEKAIKTTGLEKNKQKVLYTEVFCQEAFNEIEAH 546 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999988877531 1 222 22334444444455556665
No 5
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=2.4e-51 Score=449.37 Aligned_cols=329 Identities=20% Similarity=0.264 Sum_probs=288.1
Q ss_pred HHHHHHHHHHcCCC----HHH-Hhhhhhhc---------C---C--cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSSV---------D---E--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~~---------~---~--~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
+.++|+.+.+.||. |++ ||.+.+.. + . +..+++|..++..+|..+||++||++|+|++.+|
T Consensus 81 p~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G 160 (607)
T 2uxw_A 81 EETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASG 160 (607)
T ss_dssp CHHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 46789999999987 554 55543321 1 1 2234566656678899999999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCC---C--CcceEEE
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDG---Q--DHGVNGF 150 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~---~--~~g~~~f 150 (547)
++++|+++|||++|||+.+++|+|++++++++|+|| |+|+|||| +..||+++|+|++...+ + .+|+++|
T Consensus 161 ~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~Ln-----G~K~~is~-~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~f 234 (607)
T 2uxw_A 161 ETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLN-----GSKLWISN-GGLADIFTVFAKTPVTDPATGAVKEKITAF 234 (607)
T ss_dssp SSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEE-----EEEEEEET-TTTCSEEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred CeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEE-----eEEEeecC-CcccCEEEEEEEecCCCcccCCCCCceEEE
Confidence 999999999999999999999999998767799999 99999999 89999999999986422 1 4689999
Q ss_pred EEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHH
Q 008966 151 IVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYV 230 (547)
Q Consensus 151 lV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~ 230 (547)
+|| ++.|||++++.|+|+| +++++++.|.|+||+||.+++|| ..|.++. .+...+..+
T Consensus 235 lVp-------~~~~Gv~v~~~~~~~G---~rg~~t~~v~fddv~VP~~~llG------~~g~G~~------~~~~~l~~~ 292 (607)
T 2uxw_A 235 VVE-------RGFGGITHGPPEKKMG---IKASNTAEVFFDGVRVPSENVLG------EVGSGFK------VAMHILNNG 292 (607)
T ss_dssp EEE-------GGGSSEEECCCCCCSS---CTTSCEEEEEEEEEEEEGGGEES------STTCHHH------HHHHHHHHH
T ss_pred EEe-------CCCCCeEEecCccccC---CCCCCeeEEEeccEEecHHHhcC------CCCchHH------HHHHHHHHH
Confidence 999 6789999999999999 99999999999999999999998 4677665 677788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008966 231 RQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQA 310 (547)
Q Consensus 231 r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (547)
|+.+++.++|+++++++.+++|++.|+|||+ ||++||.+|++|+++.+.+++++.+.++++..++.
T Consensus 293 Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~-------pi~~~~~vq~~La~~~~~~eaaral~~~aa~~~d~------- 358 (607)
T 2uxw_A 293 RFGMAAALAGTMRGIIAKAVDHATNRTQFGE-------KIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQ------- 358 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------chhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence 9999999999999999999999999999998 99999999999999999999999999998876652
Q ss_pred CCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHHH
Q 008966 311 NDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 389 (547)
Q Consensus 311 ~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~ 389 (547)
+. ++.+..++++|.++++.+.+++++|+|+|||+||+.+++++++|||++...++||+|++++..++...|....
T Consensus 359 ~~----~~~~~~~~~aK~~~se~a~~v~~~a~qv~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~glq~~~ 433 (607)
T 2uxw_A 359 GA----TDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDKG 433 (607)
T ss_dssp TC----SCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHH
T ss_pred CC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCccHHHHHHHhcccceeeCChHHHHHHHHHHHHHHHHH
Confidence 11 2346778999999999999999999999999999999999999999999999999999999999877665443
No 6
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=2.1e-52 Score=438.70 Aligned_cols=323 Identities=21% Similarity=0.294 Sum_probs=285.0
Q ss_pred HHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcch--hHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~--~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
+.++|+.+.+.||. |++ ||.+.+.. +.+.+ +.+|..++.++|..+|+++||++|+|++.+|
T Consensus 62 ~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g 141 (404)
T 2jif_A 62 EKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTE 141 (404)
T ss_dssp CHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 56789999999987 554 55443321 11333 4466667788899999999999999999998
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeec
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 155 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r 155 (547)
+ ++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|++| +..||+++|+|++..+++..|+++|+||
T Consensus 142 ~-~~~~a~tEp~~Gsd~~~~~t~A~~~--g~g~vln-----G~K~~is~-a~~Ad~~~v~ar~~~~~~~~g~~~flV~-- 210 (404)
T 2jif_A 142 K-VGSFCLSEAGAGSDSFALKTRADKE--GDYYVLN-----GSKMWISS-AEHAGLFLVMANVDPTIGYKGITSFLVD-- 210 (404)
T ss_dssp C-CEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTTCSEEEEEEESCGGGGGGGEEEEEEE--
T ss_pred C-cceEEecCCCCCCChhhceeEEEEe--CCEEEEE-----eEEEeecC-CcccCEEEEEEEeCCCCCCCceEEEEEe--
Confidence 6 7899999999999999999999998 7899999 99999999 8999999999998655455789999999
Q ss_pred CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966 156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 235 (547)
Q Consensus 156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~ 235 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. .|.++. .....+..+|+.++
T Consensus 211 -----~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~a 270 (404)
T 2jif_A 211 -----RDTPGLHIGKPENKLG---LRASSTCPLTFENVKVPEANILGQ------IGHGYK------YAIGSLNEGRIGIA 270 (404)
T ss_dssp -----TTCTTEEECCCCCBSS---CTTSCEEEEEEEEEEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHH
T ss_pred -----cCCCCeEeccCccccc---CCCCceEEEEEccEEECHHHcCCC------CCchHH------HHHHHHHHHHHHHH
Confidence 7789999999999999 999999999999999999999983 565554 56677888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966 236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 315 (547)
Q Consensus 236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (547)
+.++|+++++++.+++|++.|+|||+ ||.+||.+|++|+++.+.+++++.+.+++++.+++ ++
T Consensus 271 a~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~--- 333 (404)
T 2jif_A 271 AQMLGLAQGCFDYTIPYIKERIQFGK-------RLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEA-------GK--- 333 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCC-------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC---
Confidence 99999999999999999999999999 99999999999999999999999999999876642 11
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHH
Q 008966 316 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 387 (547)
Q Consensus 316 ~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 387 (547)
+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..|++.+++.
T Consensus 334 --~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~~~~ 403 (404)
T 2jif_A 334 --PFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAE 403 (404)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHhcCcceecCCCcHHHHHhhccceeecCCHHHHHHHHHHHHHhhc
Confidence 1245688999999999999999999999999999999999999999999999999999999999999864
No 7
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=3.7e-52 Score=434.85 Aligned_cols=324 Identities=22% Similarity=0.224 Sum_probs=286.7
Q ss_pred HHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcch--hHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~--~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
+.++|+.+.+.||. |++ ||.+.+.. +.+.+ +.+|..++..+|..+|+++||++|+|++.+|
T Consensus 40 ~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g 119 (387)
T 2d29_A 40 PWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASG 119 (387)
T ss_dssp CHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 45789999999976 444 55443221 12334 3456557888999999999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCC----CCcceEEEE
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDG----QDHGVNGFI 151 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~----~~~g~~~fl 151 (547)
++++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|+|| +..||+++|+|++.+++ +..|+++|+
T Consensus 120 ~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~~~~~g~~~fl 191 (387)
T 2d29_A 120 EALGAWGLTEPGSGSDAAALKTKAEKV--EGGWRLN-----GTKQFITQ-GSVAGVYVVMARTDPPPSPERKHQGISAFA 191 (387)
T ss_dssp SSCEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTTCSEEEEEEECSCCSCGGGTTTTEEEEE
T ss_pred CceEEEEeCCCCCCCCHhhCceEEEEe--CCEEEEE-----eEEeccCC-CCcCCEEEEEEEeCCccccCCCCCCeEEEE
Confidence 999999999999999999999999998 7899999 99999999 89999999999986443 456899999
Q ss_pred EeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHH
Q 008966 152 VQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR 231 (547)
Q Consensus 152 V~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r 231 (547)
|| .+.|||++.+.|+++| +++++++.|.||||+||.+++|+. .|.++. .....+...|
T Consensus 192 V~-------~~~pGv~v~~~~~~~g---~~~~~~~~v~f~~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r 249 (387)
T 2d29_A 192 FF-------RPERGLKVGRKEEKLG---LTASDTAQLILEDLFVPEEALLGE------RGKGFY------DVLRVLDGGR 249 (387)
T ss_dssp EE-------CCSSSEEECCCCCCSS---CTTSCEEEEEEEEEEEEGGGEESS------TTBHHH------HHHHHHHHHH
T ss_pred Ee-------CCCCCeeccCcccccC---CCCCCeeEEEEeeEEECHHHcCCC------CCccHH------HHHHHHHHHH
Confidence 99 7789999999999999 999999999999999999999983 566554 5667788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008966 232 QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAN 311 (547)
Q Consensus 232 ~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 311 (547)
+.+++.++|+++++++.+++|++.|+|||+ ||.+||.+|++|+++.+.+++++.+++++++.+++ +
T Consensus 250 ~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g 315 (387)
T 2d29_A 250 IGIAAMAVGLGQAALDYALAYAKGREAFGR-------PIAEFEGVSFKLAEAATELEAARLLYLKAAELKDA-------G 315 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccCCc-------chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C
Confidence 999999999999999999999999999998 99999999999999999999999999999887652 1
Q ss_pred CCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHH
Q 008966 312 DFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 387 (547)
Q Consensus 312 ~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 387 (547)
. +....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+|+.
T Consensus 316 ~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~i~~~~ia~~~l~~ 386 (387)
T 2d29_A 316 R-----PFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEA 386 (387)
T ss_dssp C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHT
T ss_pred C-----CchHHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhCccccCCHHHHHHHHHHHHHhhc
Confidence 1 2356789999999999999999999999999999999999999999999999999999999999999863
No 8
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2.5e-52 Score=434.92 Aligned_cols=323 Identities=22% Similarity=0.321 Sum_probs=286.2
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcch--hHhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~--~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+.++|+.+.+.||. |++ ||.+.+.. +.+.+ +.+| .++..+|..+|+++||++|+|++.+
T Consensus 37 ~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~ 115 (379)
T 1ukw_A 37 VPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTE 115 (379)
T ss_dssp CCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTS
T ss_pred CCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 356789999999976 554 55443321 12333 3455 4778889999999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEee
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 154 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~ 154 (547)
|++++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|+|| +..||+++|+|++..+++..|+++|+||
T Consensus 116 g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~- 186 (379)
T 1ukw_A 116 KPALAAFALSEPGNGSDAAALKTRAIRQ--GDHYVLN-----GTKMWISN-GGEAEWVVVFATVNPELRHKGVVALVVE- 186 (379)
T ss_dssp SSCEEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTTEEEEEEEEESCGGGGGGGEEEEEEE-
T ss_pred CCceEEEEecCCCCCcChhhCeEEEEEe--CCEEEEE-----EEEecccC-CCcCCEEEEEEEcCCCCCCCceEEEEEe-
Confidence 9999999999999999999999999998 7899999 99999999 9999999999998655455689999999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 234 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~ 234 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. .|.++. .....+...|+.+
T Consensus 187 ------~~~~Gv~v~~~~~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~ 245 (379)
T 1ukw_A 187 ------RGTPGFKAIKIHGKMG---QRASGTYELVFEDVKVPVENRLGE------EGEGFK------IAMQTLNKTRIPV 245 (379)
T ss_dssp ------TTCTTEEEEECCCCSS---CTTSCEEEEEEEEEEEEGGGEESC------TTCHHH------HHHHHHHHHHHHH
T ss_pred ------CCCCCeEecCcccccc---CCCCCeeEEEEeeEEecHHhcCCC------CCchHH------HHHHHHHHHHHHH
Confidence 7789999999999999 999999999999999999999983 555544 5666778899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008966 235 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 314 (547)
Q Consensus 235 ~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (547)
++.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.+++ +.
T Consensus 246 aa~~~G~a~~al~~~~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------g~-- 309 (379)
T 1ukw_A 246 AAGSVGVARRALDEARKYAKEREAFGE-------PIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQ-------GL-- 309 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCBSSSS-------BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhCeeCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC--
Confidence 999999999999999999999999999 99999999999999999999999999999887753 11
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 315 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 315 ~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+|+
T Consensus 310 ---~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 378 (379)
T 1ukw_A 310 ---PHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHILA 378 (379)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHhhCCeecCCCChHHHHHHHhcCceecCCHHHHHHHHHHHHHhc
Confidence 235678999999999999999999999999999999999999999999999999999999999999874
No 9
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=4.8e-52 Score=434.48 Aligned_cols=328 Identities=23% Similarity=0.297 Sum_probs=289.8
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCc--chhHhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~--~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+.++|+.+.+.||. |++ ||.+.+.. +.+ ..+.+|..++..+|..+|+++||++|+|++.+
T Consensus 38 ~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~ 117 (391)
T 2vig_A 38 FPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTS 117 (391)
T ss_dssp CCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSS
T ss_pred CCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 356789999999976 544 55443321 112 23456655778899999999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEee
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 154 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~ 154 (547)
|++++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|+|| +..||+++|+|+++++++..|+++|+||
T Consensus 118 g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~- 188 (391)
T 2vig_A 118 GDKIGCFALSEPGNGSDAGAASTTARAE--GDSWVLN-----GTKAWITN-AWEASAAVVFASTDRALQNKSISAFLVP- 188 (391)
T ss_dssp SSCCEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTTCSEEEEEEECCSSSTTSCEEEEEEE-
T ss_pred CCceEEEEecCCCCCCCcccceeEEEEe--CCEEEEe-----eEEEeecC-CCcCCEEEEEEEeCCCCCCCceEEEEEe-
Confidence 9999999999999999999999999998 7899999 99999999 8999999999998654445689999999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 234 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~ 234 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. .|.++. .....+...|+.+
T Consensus 189 ------~~~pGv~v~~~~~~~g---~r~~~~~~v~fd~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~ 247 (391)
T 2vig_A 189 ------MPTPGLTLGKKEDKLG---IRGSSTANLIFEDCRIPKDSILGE------PGMGFK------IAMQTLDMGRIGI 247 (391)
T ss_dssp ------SSCTTEEECCCCCBSS---CTTSCEEEEEEEEEEEEGGGEESS------TTBHHH------HHHHHHHHHHHHH
T ss_pred ------CCCCCeEecCcccccc---CCCCCeeEEEECcEEECHHHcCCC------CCchHH------HHHHHHHHHHHHH
Confidence 6789999999999999 999999999999999999999983 566654 5667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008966 235 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 314 (547)
Q Consensus 235 ~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (547)
++.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.+++ +.
T Consensus 248 aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~-------g~-- 311 (391)
T 2vig_A 248 ASQALGIAQTALDCAVNYAENRMAFGA-------PLTKLQVIQFKLADMALALESARLLTWRAAMLKDN-------KK-- 311 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCCC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC--
Confidence 999999999999999999999999999 99999999999999999999999999999887642 11
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHHHH
Q 008966 315 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQ 390 (547)
Q Consensus 315 ~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~ 390 (547)
.....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+++.++.
T Consensus 312 ---~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~~~~ 384 (391)
T 2vig_A 312 ---PFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRSYRS 384 (391)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHC
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHHHHHhhCCeEecCCChHHHHHHHhhcceeecCHHHHHHHHHHHHHHhhccc
Confidence 1355689999999999999999999999999999999999999999999999999999999999999987753
No 10
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=3.7e-52 Score=436.12 Aligned_cols=325 Identities=23% Similarity=0.302 Sum_probs=286.1
Q ss_pred HHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchhH-hhhhhhHHHHhcCCCHHHHHhHhHHHhccc
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKME 76 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~~-~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~ 76 (547)
+.++|+.+.+.||. |++ ||.+.+.. +.+.++. .|..++..+|..+|+++||++|||++.+|+
T Consensus 49 ~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~ 128 (396)
T 1egd_A 49 PVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEP 128 (396)
T ss_dssp CHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHCCHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 45789999999976 444 55443221 1233433 566666777889999999999999999999
Q ss_pred eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCC---cceEEEEEe
Q 008966 77 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQD---HGVNGFIVQ 153 (547)
Q Consensus 77 ~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~---~g~~~flV~ 153 (547)
+++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|+|| +..||+++|+|+++.+++. .|+++|+||
T Consensus 129 ~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~ 200 (396)
T 1egd_A 129 LMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN-----GQKMWITN-GGKANWYFLLARSDPDPKAPANKAFTGFIVE 200 (396)
T ss_dssp CCEEEECCBTTBSSSGGGCCCEEEEC--SSEEEEE-----EEEEEEET-TTTCSEEEEEEECCCCTTSCGGGTEEEEEEE
T ss_pred ceEEEEecCCCCCcchhhCeeEEEEe--CCEEEEE-----EEEEcccC-CcccCEEEEEEEeCCCCCCCCCCCeEEEEEe
Confidence 99999999999999999999999987 7899999 99999999 8999999999998755333 689999999
Q ss_pred ecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHH
Q 008966 154 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 233 (547)
Q Consensus 154 ~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~ 233 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|| ..|.++. .....+...|+.
T Consensus 201 -------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~v~Vp~~~~lg------~~~~g~~------~~~~~l~~~r~~ 258 (396)
T 1egd_A 201 -------ADTPGIQIGRKELNMG---QRCSDTRGIVFEDVKVPKENVLI------GDGAGFK------VAMGAFDKERPV 258 (396)
T ss_dssp -------TTCTTEEECCCCCBSS---CTTSCEEEEEEEEEEEEGGGBSS------STTBHHH------HHHHHHHHHHHH
T ss_pred -------CCCCCeeeCCcccccc---ccCCCeeEEEECcEEECHHHcCC------CCCccHH------HHHHHHHHHHHH
Confidence 7789999999999999 99999999999999999999998 3566554 566778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008966 234 IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF 313 (547)
Q Consensus 234 ~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 313 (547)
+++.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.++. +.
T Consensus 259 ~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~- 323 (396)
T 1egd_A 259 VAAGAVGLAQRALDEATKYALERKTFGK-------LLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDS-------GR- 323 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-
Confidence 9999999999999999999999999998 99999999999999999999999999999887652 11
Q ss_pred CChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHH
Q 008966 314 STLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 388 (547)
Q Consensus 314 ~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 388 (547)
+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+++.+
T Consensus 324 ----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~~ 394 (396)
T 1egd_A 324 ----RNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKY 394 (396)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHTT
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCChHHHHHHHhhCeeecCCHHHHHHHHHHHHHHhhc
Confidence 23456899999999999999999999999999999999999999999999999999999999999998754
No 11
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=4e-52 Score=434.11 Aligned_cols=324 Identities=22% Similarity=0.254 Sum_probs=287.3
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhh---hhhc------------CCcch--hHhhhhhhHHHHhcCCCHHHHHhHhHH
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASML---RSSV------------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPL 71 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~---~~~~------------~~~~~--~~~h~~l~~~~i~~~Gt~~q~~~~l~~ 71 (547)
.+.++|+.+.+.||. |++ ||.+ .+.. +.+.+ +.+|..++..+|..+|+++||++|+|+
T Consensus 37 ~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~ 116 (383)
T 1buc_A 37 YDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVP 116 (383)
T ss_dssp CCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHH
T ss_pred CCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHHhhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHH
Confidence 356789999999976 444 6655 3332 12333 456666788899999999999999999
Q ss_pred HhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEE
Q 008966 72 AYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFI 151 (547)
Q Consensus 72 i~~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~fl 151 (547)
+.+|+.++|+++|||++|||+.+++|+|++++ +|+|+|| |+|+|+|| +..||+++|+|++.++++..|+++|+
T Consensus 117 ~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~-~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~fl 189 (383)
T 1buc_A 117 LVEGTKLGAFGLTEPNAGTDASGQQTIATKND-DGTYTLN-----GSKIFITN-GGAADIYIVFAMTDKSKGNHGITAFI 189 (383)
T ss_dssp HHHTSSCEEEECCBTTBSSCGGGCCCEEEECT-TSCEEEE-----EEEEEEET-TTTCSEEEEEEESCSSSSTTSEEEEE
T ss_pred HhCCCeeEEEEeCCCCCCCChhhCEeEEEEcC-CCEEEEE-----EEEeccCC-CCcCCEEEEEEEeCCCCCCCceEEEE
Confidence 99999999999999999999999999999874 6889999 99999999 89999999999987555557899999
Q ss_pred EeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHH
Q 008966 152 VQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR 231 (547)
Q Consensus 152 V~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r 231 (547)
|| .+.|||++.+.|+++| +++++++.|.||||+||.+++|+. .|.++. .....+...|
T Consensus 190 V~-------~~~~Gv~v~~~~~~~g---~~~~~~~~v~f~~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r 247 (383)
T 1buc_A 190 LE-------DGTPGFTYGKKEDKMG---IHTSQTMELVFQDVKVPAENMLGE------EGKGFK------IAMMTLDGGR 247 (383)
T ss_dssp EE-------TTCTTEEEEEECCCSS---CTTSCEEEEEEEEEEECGGGEESC------TTBHHH------HHHHHHHHHH
T ss_pred EE-------CCCCCeEecCcccccc---ccCCceeEEEEccEEeCHHHcCCC------CCchHH------HHHHHHHHHH
Confidence 99 7789999999999999 999999999999999999999983 566554 5667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008966 232 QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAN 311 (547)
Q Consensus 232 ~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 311 (547)
+.+++.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.+++ +
T Consensus 248 ~~~aa~~~G~a~~al~~~~~ya~~R~~fG~-------~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~~~-------g 313 (383)
T 1buc_A 248 IGVAAQALGIAEAALADAVEYSKQRVQFGK-------PLCKFQSISFKLADMKMQIEAARNLVYKAACKKQE-------G 313 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeeCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C
Confidence 999999999999999999999999999999 99999999999999999999999999999887753 1
Q ss_pred CCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHH
Q 008966 312 DFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 385 (547)
Q Consensus 312 ~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 385 (547)
. +....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+|
T Consensus 314 ~-----~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l 382 (383)
T 1buc_A 314 K-----PFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 382 (383)
T ss_dssp C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHT
T ss_pred C-----chHHHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhcccccCCHHHHHHHHHHHHHh
Confidence 1 23567899999999999999999999999999999999999999999999999999999999999876
No 12
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=5e-52 Score=434.81 Aligned_cols=323 Identities=19% Similarity=0.257 Sum_probs=285.6
Q ss_pred HHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcc--hhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccce
Q 008966 17 YAWKRIIELRLS----EEE-ASMLRSSV------------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEI 77 (547)
Q Consensus 17 ~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~--~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~ 77 (547)
++|+.+.+.||. |++ ||.+.+.. +.+. .+.+|..++..+|..+|+++||++|+|++.+|++
T Consensus 50 ~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~ 129 (394)
T 1ivh_A 50 EFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEY 129 (394)
T ss_dssp HHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCe
Confidence 889999999976 444 55443221 1233 3455665788899999999999999999999999
Q ss_pred eeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccC--CCCcceEEEEEeec
Q 008966 78 IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLR 155 (547)
Q Consensus 78 ~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~--~~~~g~~~flV~~r 155 (547)
++|+++|||++|||+..++|+|+++ +|+|+|| |+|+|++| +..||+++|+|++.++ ++..|+++|+||
T Consensus 130 ~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ln-----G~K~~vs~-~~~Ad~~~v~ar~~~~~~~~~~g~~~flV~-- 199 (394)
T 1ivh_A 130 IGALAMSEPNAGSDVVSMKLKAEKK--GNHYILN-----GNKFWITN-GPDADVLIVYAKTDLAAVPASRGITAFIVE-- 199 (394)
T ss_dssp CEEEECCBTTBSSSGGGCCCEEEEC--SSEEEEE-----EEEEEEET-GGGCSEEEEEEESCTTCSSGGGGEEEEEEE--
T ss_pred EEEEEecCCCCCcCcccceEEEEEc--CCEEEEE-----eEEEeeCC-CCcCCEEEEEEEeCCcccCCCCCeEEEEEe--
Confidence 9999999999999999999999988 7899999 99999999 9999999999998654 344689999999
Q ss_pred CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966 156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 235 (547)
Q Consensus 156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~ 235 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. .|.++. .....+...|+.++
T Consensus 200 -----~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~a 259 (394)
T 1ivh_A 200 -----KGMPGFSTSKKLDKLG---MRGSNTCELIFEDCKIPAANILGH------ENKGVY------VLMSGLDLERLVLA 259 (394)
T ss_dssp -----TTCTTEEECCCCCBSS---CTTSCEEEEEEEEEEEEGGGEESC------TTCHHH------HHHHHHHHHHHHHT
T ss_pred -----CCCCCeEecccccccc---CCCCCeeEEEECcEEEcHHHcCCC------CCchHH------HHHHHHHHHHHHHH
Confidence 7789999999999999 999999999999999999999984 555554 56677888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966 236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 315 (547)
Q Consensus 236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (547)
+.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.+++ +.
T Consensus 260 a~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~--- 322 (394)
T 1ivh_A 260 GGPLGLMQAVLDHTIPYLHVREAFGQ-------KIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDE-------GH--- 322 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCeeCCc-------chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC---
Confidence 99999999999999999999999998 99999999999999999999999999999887642 11
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHH
Q 008966 316 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 388 (547)
Q Consensus 316 ~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 388 (547)
+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+++.+
T Consensus 323 --~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~ll~~~ 393 (394)
T 1ivh_A 323 --CTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNADF 393 (394)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSTHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHTC-
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCchHHHHHHhcccccccCChHHHHHHHHHHHHHhhc
Confidence 23456889999999999999999999999999999999999999999999999999999999999998754
No 13
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=8.8e-52 Score=429.74 Aligned_cols=318 Identities=23% Similarity=0.276 Sum_probs=282.2
Q ss_pred HHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCc--chhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSSV------------DEP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~--~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
+.++|+.+.+.||. |++ ||.+.+.. +.+ ..+.+|..++..+|..+|+++||++|+|++.+|
T Consensus 36 ~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g 115 (372)
T 2dvl_A 36 PWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARG 115 (372)
T ss_dssp CHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTT
T ss_pred CHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 45789999999976 444 55443321 112 234556456778899999999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeec
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 155 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r 155 (547)
++++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|+|| +..||+++|+|++++ |+++|+||
T Consensus 116 ~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~-----g~~~flV~-- 180 (372)
T 2dvl_A 116 EWIGAFCLTEPQAGSDAKSLRAEARRV--KGGFVLN-----GVKSWITS-AGHAHLYVVMARTEK-----GISAFLVE-- 180 (372)
T ss_dssp SSCEEEECCCSSCSSCGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTTCSEEEEEEEETT-----EEEEEEEE--
T ss_pred CeEEEEEecCCCCCCChhhCeeEEEEE--CCEEEEE-----eEEEeecC-CCcCCEEEEEEEeCC-----CcEEEEEe--
Confidence 999999999999999999999999998 7899999 99999999 899999999999752 68999999
Q ss_pred CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966 156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 235 (547)
Q Consensus 156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~ 235 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. .|.++. .....+...|+.++
T Consensus 181 -----~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~a 240 (372)
T 2dvl_A 181 -----KGTPGLSFGRPEEKMG---LHAAHTAEVRLEEVFVPEENLLGE------EGRGLA------YALAGLDSGRVGVA 240 (372)
T ss_dssp -----TTCTTEEECCCCCCSS---CTTSCEEEEEEEEEEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHH
T ss_pred -----CCCCCeEecCcccccc---cCcCCeeEEEECcEEeCHHHcCCC------CCchHH------HHHHHHHHHHHHHH
Confidence 7789999999999999 999999999999999999999983 566554 56677888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966 236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 315 (547)
Q Consensus 236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (547)
+.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.+++ +.
T Consensus 241 a~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------g~--- 303 (372)
T 2dvl_A 241 AQAVGIARGAFEIAKAYAEEREQFGK-------KLKEHQAIAFKIADMHVKIAAARALVLEAARKKDR-------GE--- 303 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC---
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC---
Confidence 99999999999999999999999999 99999999999999999999999999999887642 11
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 316 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 316 ~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..|++.+|+
T Consensus 304 --~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 372 (372)
T 2dvl_A 304 --RFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR 372 (372)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHhhcCeecCCCCcHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 235678999999999999999999999999999999999999999999999999999999999998873
No 14
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=2.5e-52 Score=436.92 Aligned_cols=324 Identities=24% Similarity=0.266 Sum_probs=285.3
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchh--HhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~--~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+.++|+.+.+.||. |++ ||.+.+.. +.+.++ ..| .+....|..+|+++||++|+|++.+
T Consensus 51 ~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~ 129 (393)
T 3pfd_A 51 FPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAVN-KLGTMGLILRGSEELKKQVLPAVAS 129 (393)
T ss_dssp CCHHHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTHHHHHHCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 356789999999977 555 55543321 123333 334 3556678899999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEee
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 154 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~ 154 (547)
|++++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|+|| +.+||+++|+|++.++++..|+++|+||
T Consensus 130 G~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~- 200 (393)
T 3pfd_A 130 GEAMASYALSEREAGSDAASMRTRAVAD--GDDWILN-----GSKCWITN-GGKSTWYTVMAVTDPDKGANGISAFMVH- 200 (393)
T ss_dssp TSCCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTTCSEEEEEEESCGGGGGGGEEEEEEE-
T ss_pred CCceeEEEEcCCCCCCCcccCeeEEEEc--CCEEEEe-----eEEEEecC-CcccCEEEEEEEeCCCCCCCceEEEEEE-
Confidence 9999999999999999999999999998 7899999 99999999 8999999999998766556789999999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 234 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~ 234 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+ ..|.++. .....+...|+.+
T Consensus 201 ------~~~pGv~v~~~~~~~G---~~~~~~~~v~fddv~Vp~~~~lg------~~g~g~~------~~~~~l~~~r~~~ 259 (393)
T 3pfd_A 201 ------KDDEGFTVGPKERKLG---IKGSPTTELYFENCRIPGDRIIG------EPGTGFK------TALATLDHTRPTI 259 (393)
T ss_dssp ------TTSTTEEEEEECCBSS---CTTSCEEEEEEEEEEEEGGGEES------STTCHHH------HHHHHHHTTHHHH
T ss_pred ------CCCCCeEecCCCCccc---CCCCCceEEEEccEEEcHHHcCC------CCCchHH------HHHHHHHHHHHHH
Confidence 7789999999999999 99999999999999999999998 3566554 6667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008966 235 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 314 (547)
Q Consensus 235 ~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (547)
++.++|+++++++.+++|++.|+|||+ ||.+||.+|++|+++.+.+++++.+++++++.+++. .
T Consensus 260 aa~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~-------~-- 323 (393)
T 3pfd_A 260 GAQAVGIAQGALDAAIAYTKERKQFGR-------PVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERG-------E-- 323 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------C--
Confidence 999999999999999999999999999 999999999999999999999999999998877641 1
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 315 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 315 ~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
.+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..|+|.+|+
T Consensus 324 --~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ll~ 393 (393)
T 3pfd_A 324 --GDLGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393 (393)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHTC
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhccCCChHHHHHHhhcceeeecCHHHHHHHHHHHHHhC
Confidence 1245568899999999999999999999999999999999999999999999999999999999999874
No 15
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=2e-51 Score=429.07 Aligned_cols=321 Identities=24% Similarity=0.300 Sum_probs=285.1
Q ss_pred HHHHHHHHHHcCCC----HHH-Hhhhhhhc------------C-CcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccc
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSSV------------D-EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 76 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~-~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~ 76 (547)
+.++|+.+.+.||. |++ ||.+.+.. + .+.++.+|..++..+|..+|+++||++|+|++.+|+
T Consensus 43 ~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~ 122 (385)
T 2pg0_A 43 PRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGE 122 (385)
T ss_dssp CHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCGGGHHHHHHHHTTHHHHHHHCCHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhCCchHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 46789999999976 544 55433221 2 334454577678889999999999999999999999
Q ss_pred eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccC--CCCcceEEEEEee
Q 008966 77 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQL 154 (547)
Q Consensus 77 ~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~--~~~~g~~~flV~~ 154 (547)
+++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|+|| +.+||+++|+|++.++ ++..|+++|+||
T Consensus 123 ~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~- 193 (385)
T 2pg0_A 123 LITAIAMTEPGAGSDLANISTTAVKD--GDYYIVN-----GQKTFITN-GIHADLIVVACKTDPQAKPPHRGISLLVVE- 193 (385)
T ss_dssp SCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-----EEEEEETT-TTTCSEEEEEEESCTTCSSGGGGEEEEEEE-
T ss_pred eEEEEEeCCCCCCcCHhhCeEEEEEc--CCEEEEE-----eEEecccC-CcccCEEEEEEEeCCccCCCCCceEEEEEe-
Confidence 99999999999999999999999998 7899999 99999999 8999999999998644 345689999999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 234 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~ 234 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. .|.++. .....+...|+.+
T Consensus 194 ------~~~pGv~v~~~~~~~g---~~~~~~~~v~fd~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~ 252 (385)
T 2pg0_A 194 ------RDTPGFTRGRKLEKVG---LHAQDTAELFFQDAKVPAYNLLGE------EGKGFY------YLMEKLQQERLVV 252 (385)
T ss_dssp ------TTCTTEEECCCCCBSS---CTTSCCEEEEEEEEEEEGGGEESC------TTCHHH------HHHHHHHHHHHHH
T ss_pred ------CCCCCeEecCCccccc---cCCCceEEEEEcceEEcHHHcCCC------CCchHH------HHHHHHHHHHHHH
Confidence 7789999999999999 999999999999999999999983 566554 6667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008966 235 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 314 (547)
Q Consensus 235 ~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (547)
++.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+.+++++.+++ +
T Consensus 253 aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~d~-------g--- 315 (385)
T 2pg0_A 253 AIAAQTAAEVMFSLTKQYVKQRTAFGK-------RVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMA-------G--- 315 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------T---
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCC-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C---
Confidence 999999999999999999999999999 99999999999999999999999999999887652 1
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHH
Q 008966 315 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 384 (547)
Q Consensus 315 ~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 384 (547)
.+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+
T Consensus 316 --~~~~~~~~~aK~~a~e~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~l 383 (385)
T 2pg0_A 316 --KQIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383 (385)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSHHHHHHHHGGGGGTTTSCHHHHHHHHHHHT
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHh
Confidence 12366789999999999999999999999999999999999999999999999999999999999864
No 16
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=1.2e-51 Score=432.97 Aligned_cols=321 Identities=19% Similarity=0.230 Sum_probs=286.2
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc-------------CCcc--hhHhhhhhhHHHHhcCCCHHHHHhHhHHHh
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV-------------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAY 73 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~-------------~~~~--~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~ 73 (547)
.+.++|+.+.+.||. |++ ||.+.+.. +.+. ++.+|..++...|..+|+++||++|+|++.
T Consensus 61 ~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~ 140 (403)
T 3r7k_A 61 IPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTL 140 (403)
T ss_dssp CCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHTTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHh
Confidence 356789999999977 555 55543321 1222 455566678889999999999999999999
Q ss_pred ccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEe
Q 008966 74 KMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 153 (547)
Q Consensus 74 ~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~ 153 (547)
+|++++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|++| +..||+++|+|++..+ +..|+++|+||
T Consensus 141 ~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~vs~-a~~Ad~~~v~a~~~~~-~~~g~~~flV~ 211 (403)
T 3r7k_A 141 AGKMIGSLGVTEPGAGSDVANLRTRAVRE--GDTYVVN-----GAKTFITS-GVRADFVTTAVRTGGP-GYGGVSLLVID 211 (403)
T ss_dssp TTSCCEEEECCBTTBSSCGGGCCCEEEEC--SSEEEEE-----EEEEEEET-TTTCSEEEEEEECSSS-SGGGEEEEEEE
T ss_pred CCCeeEEEEecCCCCCCChhhceEEEEEE--CCEEEEE-----EEEEcccC-CccCCEEEEEEEcCCC-CCCceEEEEEe
Confidence 99999999999999999999999999988 7899999 99999999 9999999999998765 55789999999
Q ss_pred ecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHH
Q 008966 154 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 233 (547)
Q Consensus 154 ~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~ 233 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. .|.++. .....+...|+.
T Consensus 212 -------~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~ 269 (403)
T 3r7k_A 212 -------KNSPGFEVSRRLDKMG---WRCSDTAELSFVDVRVPADNLVGA------ENSGFL------QIMQQFQAERLG 269 (403)
T ss_dssp -------TTCTTEEEEEECCBSS---CTTSCEEEEEEEEEEEEGGGEESS------TTCHHH------HHHHTHHHHHHH
T ss_pred -------CCCCCeEecCcccccC---CCCCCceEEEEeeEEECHHHcCCC------CCchHH------HHHHHHHHHHHH
Confidence 7789999999999999 999999999999999999999983 565554 667778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008966 234 IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF 313 (547)
Q Consensus 234 ~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 313 (547)
+++.++|+++++++.+++|+++|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.+++ +.
T Consensus 270 ~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~- 334 (403)
T 3r7k_A 270 IAVQAYATAGRALDLAKSWARERETFGR-------PLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLA-------GE- 334 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCCC-------chhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-
Confidence 9999999999999999999999999999 99999999999999999999999999999887752 11
Q ss_pred CChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHH
Q 008966 314 STLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 384 (547)
Q Consensus 314 ~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 384 (547)
+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..|++.+
T Consensus 335 ----~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 401 (403)
T 3r7k_A 335 ----DVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401 (403)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEecCCchHHHHHHHhCcceeecCHHHHHHHHHHHHh
Confidence 1245689999999999999999999999999999999999999999999999999999999999875
No 17
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=2.7e-51 Score=430.37 Aligned_cols=322 Identities=21% Similarity=0.241 Sum_probs=287.7
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcc---hhHhhhhhhHHHHhcCCCHHHHHhHhHHHh
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPA---FTDLHWGMFVPAIKGQGTDEQHQKWLPLAY 73 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~---~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~ 73 (547)
.+.++|+.+.+.||. |++ ||.+.+.. +.+. ++.+|..++...|..+|+++||++|+|++.
T Consensus 58 ~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~ 137 (403)
T 3p4t_A 58 IPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTL 137 (403)
T ss_dssp CCHHHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHHHHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHh
Confidence 457899999999987 555 65543331 2233 456777678888999999999999999999
Q ss_pred ccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEe
Q 008966 74 KMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 153 (547)
Q Consensus 74 ~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~ 153 (547)
+|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|++| +..||+++|+|++.++ +..|+++|+||
T Consensus 138 ~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~vs~-a~~Ad~~~v~a~~~~~-~~~g~~~flV~ 208 (403)
T 3p4t_A 138 RGEKIGALAITEPGGGSDVGHLRTRADLD--GDHYVIN-----GAKTYITS-GVRADYVVTAARTGGP-GAGGVSLIVVD 208 (403)
T ss_dssp TTSSCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTTCSEEEEEEECSSS-SGGGEEEEEEE
T ss_pred CCCeEEEEEecCCCCCCCcccceEEEEEe--CCEEEEE-----EEEEEecC-CcccCEEEEEEEeCCC-CCCceEEEEEe
Confidence 99999999999999999999999999998 7899999 99999999 9999999999998765 55789999999
Q ss_pred ecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHH
Q 008966 154 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 233 (547)
Q Consensus 154 ~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~ 233 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+ ..|.++. .....+..+|+.
T Consensus 209 -------~~~pGv~v~~~~~~~G---~~~~~~~~v~fddv~Vp~~~~lg------~~~~g~~------~~~~~l~~~r~~ 266 (403)
T 3p4t_A 209 -------KGTPGFEVTRKLDKMG---WRSSDTAELSYTDVRVPVANLVG------SENTGFA------QIAAAFVAERVG 266 (403)
T ss_dssp -------TTCTTEEEEEECCBSS---CTTSCEEEEEEEEEEEEGGGEES------STTCHHH------HHHHHHHHHHHH
T ss_pred -------CCCCCeEecCCCCccc---CCCCCeeEEEEcceEecHHHcCC------CCCchHH------HHHHHHHHHHHH
Confidence 7789999999999999 99999999999999999999998 3565554 667778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008966 234 IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF 313 (547)
Q Consensus 234 ~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 313 (547)
+++.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.+++ ++.
T Consensus 267 ~aa~~~G~a~~al~~a~~~a~~R~~fg~-------pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~~ 332 (403)
T 3p4t_A 267 LATQAYAGAQRCLDLTVEWCRNRDTFGR-------PLISRQAVQNTLAGMARRIDVARVYTRHVVERQLA-------GET 332 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccCCC-------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCC
Confidence 9999999999999999999999999999 99999999999999999999999999999887752 111
Q ss_pred CChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHH
Q 008966 314 STLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 384 (547)
Q Consensus 314 ~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 384 (547)
.....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+
T Consensus 333 ----~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 399 (403)
T 3p4t_A 333 ----NLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399 (403)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHHHHHhhChhhccCCCcHHHHHHHhhcceeccCHHHHHHHHHHHHc
Confidence 1156689999999999999999999999999999999999999999999999999999999999987
No 18
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=7.9e-51 Score=425.47 Aligned_cols=322 Identities=22% Similarity=0.268 Sum_probs=284.0
Q ss_pred HHHHHHHHHHcCCC----HHH-Hhhhhhhc---------C---Ccc--hhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSSV---------D---EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~~---------~---~~~--~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
+.++|+.+.+.||. |++ ||.+.+.. + .+. .+.+|. ++...|..+|+++||++|+|++.+|
T Consensus 52 p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G 130 (393)
T 1rx0_A 52 PVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTM 130 (393)
T ss_dssp CHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhCcchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCC
Confidence 45789999999977 554 55443321 1 122 234453 6778899999999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeec
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 155 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r 155 (547)
++++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|+|| +..||+++|+|++.. ++..|+++|+||
T Consensus 131 ~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~-~~~~g~~~flV~-- 199 (393)
T 1rx0_A 131 EKFASYCLTEPGSGSDAASLLTSAKKQ--GDHYILN-----GSKAFISG-AGESDIYVVMCRTGG-PGPKGISCIVVE-- 199 (393)
T ss_dssp SSCEEEECCBTTBSSSGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTTCSEEEEEEESSS-SSGGGEEEEEEE--
T ss_pred CceEEEEecCCCCCcCcccceeEEEEc--CCEEEEE-----eEEEeecC-CccCCEEEEEEEcCC-CCCCceEEEEEe--
Confidence 999999999999999999999999998 7899999 99999999 899999999999754 345689999999
Q ss_pred CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966 156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 235 (547)
Q Consensus 156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~ 235 (547)
.+.|||++.+.++++| +++.+++.|.||||+||.+++|+. .|.++. .....+...|+.++
T Consensus 200 -----~~~pGv~v~~~~~~~g---~~~~~~~~v~fd~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~a 259 (393)
T 1rx0_A 200 -----KGTPGLSFGKKEKKVG---WNSQPTRAVIFEDCAVPVANRIGS------EGQGFL------IAVRGLNGGRINIA 259 (393)
T ss_dssp -----TTCTTEEECCCCCBSS---CTTSCEEEEEEEEEEEEGGGEESS------TTCHHH------HHHHHHHHHHHHHH
T ss_pred -----CCCCCeEecCcccccc---cCCCCceEEEEcCeEeCHHHcCCC------CCchHH------HHHHHHHHHHHHHH
Confidence 7789999999999999 999999999999999999999983 565554 55667788999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966 236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 315 (547)
Q Consensus 236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (547)
+.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.+++ ++
T Consensus 260 a~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~--- 322 (393)
T 1rx0_A 260 SCSLGAAHASVILTRDHLNVRKQFGE-------PLASNQYLQFTLADMATRLVAARLMVRNAAVALQE-------ER--- 322 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC---
Confidence 99999999999999999999999998 99999999999999999999999999999887652 11
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 316 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 316 ~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
.+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..|++.+|+
T Consensus 323 -~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 392 (393)
T 1rx0_A 323 -KDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQ 392 (393)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSTHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHH
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCChHHHHHHhccCceecCChHHHHHHHHHHHHhc
Confidence 2356778999999999999999999999999999999999999999999999999999999999999885
No 19
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=9.8e-52 Score=432.87 Aligned_cols=322 Identities=22% Similarity=0.246 Sum_probs=279.3
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcc--hhHhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~--~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+.++|+.+.+.||. |++ ||.+.+.. +.+. .+.+|..++..+|..+|+++||++|+|++.+
T Consensus 51 ~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~ 130 (396)
T 3ii9_A 51 TDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 130 (396)
T ss_dssp CCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHHHHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhC
Confidence 356789999999977 555 55543332 1122 3456666667789999999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEee
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 154 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~ 154 (547)
|++++|+++|||++|||+.+++|+|+++ +|+|+|| |+|.|++| +.+||+++|+|++.. ++..|+++|+||
T Consensus 131 G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~vs~-a~~Ad~~~v~a~~~~-~g~~g~~~flV~- 200 (396)
T 3ii9_A 131 GEWIGCFGLTEPNHGSDPGSMVTRARKV--PGGYSLS-----GSKMWITN-SPIADVFVVWAKLDE-DGRDEIRGFILE- 200 (396)
T ss_dssp TSSCEEEECCCCC------CCCCEEEEE--TTEEEEE-----EEEEEEET-GGGCSEEEEEEEEEE-TTEEEEEEEEEE-
T ss_pred CCeeeEEEecCCCCCCChhhCeeEEEEe--CCEEEEE-----EEEEeECC-CccCCEEEEEEEecC-CCCCceEEEEEe-
Confidence 9999999999999999999999999998 8999999 99999999 999999999999873 334679999999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 234 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~ 234 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. |.++. .....+...|+.+
T Consensus 201 ------~~~pGv~v~~~~~~~G---~~~~~~~~v~fddv~Vp~~~~l~~-------~~g~~------~~~~~l~~~r~~~ 258 (396)
T 3ii9_A 201 ------KGCKGLSAPAIHGKVG---LRASITGEIVLDEAFVPEENILPH-------VKGLR------GPFTCLNSARYGI 258 (396)
T ss_dssp ------TTCTTEECCBCCCCSS---CTTSCEEEEEEEEEEEEGGGBCTT-------CCSTH------HHHHHHHHHHHHH
T ss_pred ------cCCCCeEecccccccc---CCcCCeeEEEEccEEECHHHccCC-------ChHHH------HHHHHHHHHHHHH
Confidence 7789999999999999 999999999999999999999962 44443 5667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008966 235 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 314 (547)
Q Consensus 235 ~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (547)
++.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.++++++..+++ +
T Consensus 259 aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~--- 321 (396)
T 3ii9_A 259 AWGALGAAESCWHIARQYVLDRKQFGR-------PLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDE-------G--- 321 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------T---
T ss_pred HHHHHHHHHHHHHHHHHHHhhCeeCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C---
Confidence 999999999999999999999999998 99999999999999999999999999999887763 1
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 315 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 315 ~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
.+....++++|.++++.+.++++.|+|+|||+||+.+++++++|||++...+++|++++++..+++.+|+
T Consensus 322 --~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~~~~~~ia~~llg 391 (396)
T 3ii9_A 322 --TAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTG 391 (396)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSCSGGGHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHS
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHHhC
Confidence 1234568899999999999999999999999999999999999999999999999999999999999986
No 20
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=1.5e-51 Score=430.41 Aligned_cols=320 Identities=23% Similarity=0.252 Sum_probs=275.3
Q ss_pred HHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcch--hHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966 15 AAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 75 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~--~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g 75 (547)
+.++|+.+.+.||. |++ ||.+.+.. +.+.+ +.+|. ++...|..+|+++||++|+|++.+|
T Consensus 49 ~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g 127 (387)
T 3nf4_A 49 PEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSG 127 (387)
T ss_dssp CTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 45689999999977 555 55443321 11333 34554 6777899999999999999999999
Q ss_pred ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeec
Q 008966 76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 155 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r 155 (547)
+.++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|+|| +..||+++|+|++. ++..|+++|+||
T Consensus 128 ~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~--~~~~g~~~flV~-- 195 (387)
T 3nf4_A 128 EQIGAYSLSEPQAGSDAAALRCAATPT--DGGYVIN-----GSKSWITH-GGKADFYTLFARTG--EGSRGVSCFLVP-- 195 (387)
T ss_dssp SCCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTTCSEEEEEEECC----CCCEEEEEEE--
T ss_pred CeeEEEEEcCCCCCCChhhCEEEEEEe--CCEEEEE-----eEEecccC-CcccCEEEEEEEeC--CCCCceEEEEEE--
Confidence 999999999999999999999999998 7999999 99999999 89999999999986 345689999999
Q ss_pred CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966 156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 235 (547)
Q Consensus 156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~ 235 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+ ..|.++. .....+..+|+.++
T Consensus 196 -----~~~pGv~~~~~~~~~G---~~~~~~~~v~fd~v~Vp~~~~lg------~~~~g~~------~~~~~l~~~r~~~a 255 (387)
T 3nf4_A 196 -----ADQPGLSFGKPEEKMG---LHAVPTTSAFYDNARIDADRRIG------EEGQGLQ------IAFSALDSGRLGIA 255 (387)
T ss_dssp -----TTCTTEEECCCCCBSS---CCSSCEEEEEEEEEEEEGGGEES------STTCHHH------HHHHTHHHHHHHHH
T ss_pred -----CCCCCeEecCcccccc---cCCCCeeEEEEeeEEecHHHcCC------CCCchHH------HHHHHHHHHHHHHH
Confidence 7789999999999999 99999999999999999999998 3566554 66677889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966 236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 315 (547)
Q Consensus 236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (547)
+.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+.++++..+++ +
T Consensus 256 a~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~-------~---- 317 (387)
T 3nf4_A 256 AVATGLAQAALDEAVAYANERTAFGR-------KIIDHQGLGFLLADMAAAVATARATYLDAARRRDQ-------G---- 317 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------------CTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------T----
T ss_pred HHHHHHHHHHHHHHHHHHHhCeeCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C----
Confidence 99999999999999999999999998 99999999999999999999999999999877652 1
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 316 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 316 ~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
.+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..|++.++|
T Consensus 318 -~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l~~ 387 (387)
T 3nf4_A 318 -RPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLTR 387 (387)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHTTC-
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHHHHHhhCcHhhcCCCcHHHHHhHhhcCeeecChHHHHHHHHHHHHhC
Confidence 1235568899999999999999999999999999999999999999999999999999999999998764
No 21
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=8.3e-51 Score=428.53 Aligned_cols=328 Identities=19% Similarity=0.227 Sum_probs=284.9
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc---------CC----cchhHhhh--hhhHHHHhcCCCHHHHHhHhHHHh
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV---------DE----PAFTDLHW--GMFVPAIKGQGTDEQHQKWLPLAY 73 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~---------~~----~~~~~~h~--~l~~~~i~~~Gt~~q~~~~l~~i~ 73 (547)
.++++|+.+.+.||. |++ ||.+.+.. +. +.++..+. ..+...|..+|+++||++|||++.
T Consensus 59 ~~~~~~~~l~e~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~ 138 (415)
T 4hr3_A 59 ELDSLKAKARAAGLWNLFLPDPELGGGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLL 138 (415)
T ss_dssp HHHHHHHHHHHTTCSSTTCCCTTTSCCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHH
T ss_pred hHHHHHHHHHhCCCcCcCCCHHHCCCCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHh
Confidence 456789999999977 444 55443321 21 11222222 223468899999999999999999
Q ss_pred ccceeeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCC--CcEEEEEEEEccCC-CCcceEE
Q 008966 74 KMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV--STHAVVYARLITDG-QDHGVNG 149 (547)
Q Consensus 74 ~g~~~g~~a~TE~~-~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~--A~~~~V~A~~~~~~-~~~g~~~ 149 (547)
+|++++|+++|||+ +|||+.+++|+|+++ +|+|+|| |+|+|+|| +.+ ||+++|+|++++++ +..|+++
T Consensus 139 ~G~~~~~~a~tEp~~~gsd~~~~~t~A~~~--g~g~~ln-----G~K~~is~-a~~~~Ad~~~v~a~~~~~~~~~~g~~~ 210 (415)
T 4hr3_A 139 EGDIRSAFCMTEPDVASSDATNMAATAVVE--GDEVVIN-----GRKWWSTG-VGHPDCKVIIFMGLTDPNAHRYARHSM 210 (415)
T ss_dssp TTSCEEEEECCCTTSCTTSGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTSTTEEEEEEEEECCTTSCTTSSEEE
T ss_pred CCCceeEEEEcCCCCCCCchhhCeeEEEEE--CCEEEEe-----eEEeeECC-CCCCCCCEEEEEEEeCCCCCCCCceEE
Confidence 99999999999999 999999999999998 8999999 99999999 866 99999999987643 3468999
Q ss_pred EEEeecCCCCCCCCCCeEEccCCCCccccccCCcc--ceeEEecceecCccccccccccccCCcceeccCchhhHHHHHH
Q 008966 150 FIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD--NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTM 227 (547)
Q Consensus 150 flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~--~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l 227 (547)
|+|| .+.|||++.+.|+++| +++++ ++.|.||||+||.+++|+. .|.++. .....+
T Consensus 211 flV~-------~~~pGv~v~~~~~~~g---~r~~~~~~~~v~fddv~Vp~~~~lg~------~~~g~~------~~~~~l 268 (415)
T 4hr3_A 211 VLVP-------MDTPGITVERMLPTMG---FYDEPGGHGVVSFDNVRLPADAFIAG------PGKGFE------IAQGRL 268 (415)
T ss_dssp EEEE-------TTSTTEEEEEECCBTT---BCCTTTCEEEEEEEEEEEEGGGBSSC------TTCHHH------HHHHHC
T ss_pred EEEE-------cCCCceEecCCCCccc---cCCCCCCeeEEEEccEEECHHHcCCC------CCchHH------HHHHHH
Confidence 9999 7789999999999999 99987 9999999999999999983 566554 566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008966 228 VYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQR 307 (547)
Q Consensus 228 ~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~ 307 (547)
..+|+.+++.++|+++++++.+++|++.|+|||+ ||+++|.+|++|+++.+.+++++.+++++++.+++.
T Consensus 269 ~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~--- 338 (415)
T 4hr3_A 269 GPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGK-------PLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTV--- 338 (415)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 7899999999999999999999999999999998 999999999999999999999999999998877631
Q ss_pred hhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHH
Q 008966 308 LQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 387 (547)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 387 (547)
. ..+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+|+.
T Consensus 339 ----~---~~~~~~~~~~aK~~a~e~a~~v~~~a~qi~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l~~ 411 (415)
T 4hr3_A 339 ----G---IMGALSAVSEIKVAAPNMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAK 411 (415)
T ss_dssp ----C---GGGCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSSSSSHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHT
T ss_pred ----c---CCchHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCchHHHHHHHhhhheeecCcHHHHHHHHHHHHHHH
Confidence 0 123466789999999999999999999999999999999999999999999999999999999999999986
Q ss_pred H
Q 008966 388 V 388 (547)
Q Consensus 388 ~ 388 (547)
+
T Consensus 412 ~ 412 (415)
T 4hr3_A 412 Y 412 (415)
T ss_dssp T
T ss_pred h
Confidence 5
No 22
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=5.6e-51 Score=422.71 Aligned_cols=320 Identities=16% Similarity=0.172 Sum_probs=276.5
Q ss_pred HHHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcch--hHhhhhhhHHHHhcCCCHHHHHhHhHHHh
Q 008966 13 RKAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAY 73 (547)
Q Consensus 13 ~~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~--~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~ 73 (547)
..+.++|+.+.+.||. |++ ||.+.+.. +.+.+ +.+|..+...+|. +|+++||++|+|++.
T Consensus 24 ~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~-~g~~~q~~~~l~~~~ 102 (366)
T 1r2j_A 24 ELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQR-LGDAGQRATFLKELT 102 (366)
T ss_dssp CCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHh
Confidence 3467899999999977 554 55443322 12333 3456556778888 999999999999999
Q ss_pred ccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEe
Q 008966 74 KMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 153 (547)
Q Consensus 74 ~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~ 153 (547)
+|+ ++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|+|| +..||+++|+|++++ + |+++|+||
T Consensus 103 ~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~--~--g~~~flV~ 169 (366)
T 1r2j_A 103 SGK-LAAVGFSERQAGSDLSAMRTRVRLD--GDTAVVD-----GHKVWTTA-AAYADHLVVFGLQED--G--SGAVVVVP 169 (366)
T ss_dssp CC--CEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-----EEEEEETT-TTTCSEEEEEEBCSS--S--CCEEEEEE
T ss_pred CCC-eeEEEeCCCCCCCchhhCEeEEEEe--CCEEEEE-----EEEecccC-CcccCEEEEEEEeCC--C--ceEEEEEE
Confidence 999 9999999999999999999999998 7899999 99999999 899999999998753 2 78999999
Q ss_pred ecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHH-HHHHHHHHH
Q 008966 154 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLL-YGTMVYVRQ 232 (547)
Q Consensus 154 ~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~-~~~l~~~r~ 232 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. .|.++. .. ...+...|+
T Consensus 170 -------~~~~Gv~~~~~~~~~G---~r~~~~~~v~f~~v~Vp~~~~lg~------~~~g~~------~~~~~~l~~~r~ 227 (366)
T 1r2j_A 170 -------ADTPGVRVERVPKPSG---CRAAGHADLHLDQVRVPAGAVLAG------SGASLP------MLVAASLAYGRK 227 (366)
T ss_dssp -------TTSTTEEEEECSSCSS---STTSCCEEEEEEEEEEEGGGBCTT------TTSCTT------TTTHHHHHHHHH
T ss_pred -------CCCCCeEecCCcCCcc---CCCCCeeEEEEeeEEEcHHHcCCC------CCccHH------HHHHHHhhHHHH
Confidence 7789999999999999 999999999999999999999983 555554 45 567788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008966 233 TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND 312 (547)
Q Consensus 233 ~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 312 (547)
.+++.++|+++++++.+++|+++|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.+++ +.
T Consensus 228 ~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~v~~~la~~~~~~~~ar~~~~~aa~~~~~-------g~ 293 (366)
T 1r2j_A 228 SVAWGCVGILRACRTAAVAHARTREQFGR-------PLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDE-------GS 293 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC
Confidence 99999999999999999999999999998 99999999999999999999999999999886652 10
Q ss_pred CCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 313 FSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 313 ~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
.+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+|+
T Consensus 294 ----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~ia~~~lg 363 (366)
T 1r2j_A 294 ----PEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALA 363 (366)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTT
T ss_pred ----CcchHHHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCcHHHHHHhccCceecCCHHHHHHHHHHHHHhc
Confidence 1234568999999999999999999999999999999999999999999999999999999999998875
No 23
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=4e-50 Score=424.63 Aligned_cols=328 Identities=18% Similarity=0.228 Sum_probs=284.9
Q ss_pred HHHHHHHHHHHcCCC----HHHHhhhhhh---------cCC----cchhHhhh--hhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KAAYAWKRIIELRLS----EEEASMLRSS---------VDE----PAFTDLHW--GMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~~~~~~~~---------~~~----~~~~~~h~--~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+.++|+.+.+.||. |+ |.+.+. ++. +.++.++. .++...|..+|+++||++|+|++.+
T Consensus 68 ~~~~~~~~l~~~Gl~~l~~P~--G~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~ 145 (428)
T 2wbi_A 68 VIDKLKEMAKVEGLWNLFLPA--VSGLSHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQ 145 (428)
T ss_dssp HHHHHHHHHHHTTCCSTTCHH--HHCCCHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHCCCCeecCCC--CCCCCHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhC
Confidence 356789999999987 55 322211 121 12332332 2456688889999999999999999
Q ss_pred cceeeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCC--CcEEEEEEEEccCC--CCcceEE
Q 008966 75 MEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV--STHAVVYARLITDG--QDHGVNG 149 (547)
Q Consensus 75 g~~~g~~a~TE~~-~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~--A~~~~V~A~~~~~~--~~~g~~~ 149 (547)
|++++|+++|||+ +|||+.+++|+|+++ +|+|+|| |+|+|+|| +.+ ||+++|+|++++++ +..|+++
T Consensus 146 G~~~~~~a~tEp~~aGsd~~~~~t~A~~~--~~g~~ln-----G~K~~is~-a~~~~Ad~~~v~art~~~~~~~~~g~~~ 217 (428)
T 2wbi_A 146 GNITSCFCMTEPDVASSDATNIECSIQRD--EDSYVIN-----GKKWWSSG-AGNPKCKIAIVLGRTQNTSLSRHKQHSM 217 (428)
T ss_dssp TSSEEEEECCCTTSCTTSGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTSTTEEEEEEEEECCCTTSCGGGCEEE
T ss_pred CCeEEEEEEecCCcCCCCcccceEEEEEe--CCEEEEE-----eEEeccCC-CCCCcCCEEEEEEEeCCccCCCCCceEE
Confidence 9999999999999 999999999999998 7899999 99999999 877 99999999986542 3468999
Q ss_pred EEEeecCCCCCCCCCCeEEccCCCCccccccCCcc---ceeEEecceecCccccccccccccCCcceeccCchhhHHHHH
Q 008966 150 FIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD---NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGT 226 (547)
Q Consensus 150 flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~---~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~ 226 (547)
|+|| .+.|||++.+.|+++| +++++ ++.|.||||+||.+++|+. .|.++. .....
T Consensus 218 flV~-------~~~pGv~v~~~~~~~G---~~~~~~~~~~~v~fddv~VP~~~~lg~------~g~g~~------~~~~~ 275 (428)
T 2wbi_A 218 ILVP-------MNTPGVKIIRPLSVFG---YTDNFHGGHFEIHFNQVRVPATNLILG------EGRGFE------ISQGR 275 (428)
T ss_dssp EEEE-------TTSTTEEEEEECCBTT---BCCGGGCCEEEEEEEEEEEEGGGBCSC------TTCHHH------HHHHH
T ss_pred EEEE-------CCCCcEEecCCCCccc---cCCCCCCCeEEEEeCceEECHHHhcCC------ccchHH------HHHHH
Confidence 9999 7789999999999999 99995 8999999999999999983 566554 55667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 227 MVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 306 (547)
Q Consensus 227 l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~ 306 (547)
+..+|+.+++.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.+++.-
T Consensus 276 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~g- 347 (428)
T 2wbi_A 276 LGPGRIHHCMRTVGLAERALQIMCERATQRIAFKK-------KLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLG- 347 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCC-------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-
Confidence 78899999999999999999999999999999998 9999999999999999999999999999998876420
Q ss_pred hhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 307 RLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
..+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+|+
T Consensus 348 ---------~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~ 418 (428)
T 2wbi_A 348 ---------SAGAKKEIAMIKVAAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATMELR 418 (428)
T ss_dssp ---------HHHTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHH
T ss_pred ---------CcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcHHHHHHHHhhcEecCChHHHHHHHHHHHHHH
Confidence 02346778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 008966 387 TVSQ 390 (547)
Q Consensus 387 ~~~~ 390 (547)
.+++
T Consensus 419 ~~~~ 422 (428)
T 2wbi_A 419 DQAK 422 (428)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8755
No 24
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.2e-50 Score=425.60 Aligned_cols=318 Identities=24% Similarity=0.268 Sum_probs=283.0
Q ss_pred HH-HHHHHHHHHcCCC----HHHHhhhhhhc------------CCc--chhHhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KA-AYAWKRIIELRLS----EEEASMLRSSV------------DEP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~-~~~~~~~~~~g~~----~~~~~~~~~~~------------~~~--~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+ .++|+.+.+.||. ++.||.+.+.. +.+ ..+.+|..++...|..+|+++||++|+|++.+
T Consensus 62 ~p~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~ 141 (403)
T 3sf6_A 62 LPARELAVELGELGLLGMHLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMAS 141 (403)
T ss_dssp CCHHHHHHHHHHTTCSSTTSCSTTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCCcccchhhCCCCCCHHHHHHHHHHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhC
Confidence 35 7899999999976 22244433221 112 23456777778899999999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEee
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 154 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~ 154 (547)
|++++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|++| +..||+++|+|+++ .|+++|+||
T Consensus 142 G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~ar~~-----~g~~~flV~- 207 (403)
T 3sf6_A 142 GHRIGCFGLTEPDHGSDPAGMRTRATRS--GDDWILT-----GTKMWITN-GSVADVAVVWARTD-----EGIRGFVVP- 207 (403)
T ss_dssp TSSCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-----EEEEEEET-GGGCSEEEEEEEET-----TEEEEEEEE-
T ss_pred CCceEEEEEccCCCCCCchhcEEEEEEE--CCEEEEE-----EEEEeecC-CcccCEEEEEEEeC-----CceEEEEEE-
Confidence 9999999999999999999999999998 7899999 99999999 99999999999975 368999999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 234 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~ 234 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. |.++. .....+...|+.+
T Consensus 208 ------~~~pGv~v~~~~~~~G---~r~~~~~~v~fd~v~Vp~~~~lg~-------~~g~~------~~~~~l~~~r~~~ 265 (403)
T 3sf6_A 208 ------TDTPGFTANTIKSKMS---LRASVTSELVLDGVRLPDSARLPG-------ATSLG------APLRCLNEARFGI 265 (403)
T ss_dssp ------TTSTTEEEEECCSCSS---CTTSCEEEEEEEEEEEEGGGBCTT-------CCSTH------HHHHHHHHHHHHH
T ss_pred ------CCCCCeEecCCCCccC---CCCCceeEEEEccEEEcHHHccCC-------ChhHH------HHHHHHHHHHHHH
Confidence 7789999999999999 999999999999999999999972 44443 5677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 008966 235 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 314 (547)
Q Consensus 235 ~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (547)
++.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+.+++++.+++ +.
T Consensus 266 aa~~~G~a~~al~~a~~ya~~R~~fg~-------pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-- 329 (403)
T 3sf6_A 266 VFGALGAARDCLETALAYACSREQFDR-------PIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDA-------GE-- 329 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccCC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC--
Confidence 999999999999999999999999999 99999999999999999999999999999887763 11
Q ss_pred ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 315 TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 315 ~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+|+
T Consensus 330 ---~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg 398 (403)
T 3sf6_A 330 ---LAPEQVSLGKLNNVREAIEIARTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQALTG 398 (403)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHHHHHhcCCeEccccCcHHHHHhhcccceeecCHHHHHHHHHHHHHhC
Confidence 124568999999999999999999999999999999999999999999999999999999999999986
No 25
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=1.1e-50 Score=429.02 Aligned_cols=318 Identities=23% Similarity=0.309 Sum_probs=279.5
Q ss_pred HHHHHHHHHcCCC----HHHHhhhhhhc------------CCcch--hHhhhhhhHHHHhcCCCHHHHHhHhHHHhccce
Q 008966 16 AYAWKRIIELRLS----EEEASMLRSSV------------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEI 77 (547)
Q Consensus 16 ~~~~~~~~~~g~~----~~~~~~~~~~~------------~~~~~--~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~ 77 (547)
.++|+.+.+.||. |+.||.+.+.. +.+.+ +.+|..++.++|..+|+++||++|+|++.+|++
T Consensus 89 ~~~~~~l~e~Gl~~l~~pe~GG~G~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~ 168 (436)
T 2ix5_A 89 FHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNT 168 (436)
T ss_dssp GGGHHHHHTTTCTTTTCCSTTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCCcCcCCCCCCCCCCHHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCe
Confidence 3579999999976 53355433221 12333 456777788899999999999999999999999
Q ss_pred eeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeecCC
Q 008966 78 IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSL 157 (547)
Q Consensus 78 ~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r~~ 157 (547)
++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|++| +..||+++|+|++..+ .++++|+||
T Consensus 169 ~~a~a~tEp~~GSd~~~~~t~A~~~--gdg~vLn-----G~K~~is~-a~~Ad~~lv~Ar~~~~---~~~~~flV~---- 233 (436)
T 2ix5_A 169 VACWALTEPDNGSDASGLGTTATKV--EGGWKIN-----GQKRWIGN-STFADLLIIFARNTTT---NQINGFIVK---- 233 (436)
T ss_dssp CEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTTCSEEEEEEEETTT---SSEEEEEEE----
T ss_pred eeEEEecCCCCCCCcccceEEEEEe--CCEEEEe-----eeccCCCC-CcccCEEEEEEEECCC---CcEEEEEEE----
Confidence 9999999999999999999999998 7899999 99999999 9999999999998532 368999999
Q ss_pred CCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHHHH
Q 008966 158 EDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 237 (547)
Q Consensus 158 ~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~ 237 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. . .++. .....+...|+.+++.
T Consensus 234 ---~~~pGv~v~~~~~~~G---~r~~~~~~v~fddv~VP~~~~lg~------~-~g~~------~~~~~l~~~r~~~aa~ 294 (436)
T 2ix5_A 234 ---KDAPGLKATKIPNKIG---LRMVQNGDILLQNVFVPDEDRLPG------V-NSFQ------DTSKVLAVSRVMVAWQ 294 (436)
T ss_dssp ---TTCTTEEEEECCCBSS---STTSCEEEEEEEEEEEEGGGBCTT------C-SSHH------HHHHHHHHHHHHHHHH
T ss_pred ---CCCCCeEeeccccccC---CCcCCceeEEeccEEECHHHcCCc------c-ccHH------HHHHHHHHHHHHHHHH
Confidence 7789999999999999 999999999999999999999973 2 2222 4566788899999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChh
Q 008966 238 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLP 317 (547)
Q Consensus 238 ~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (547)
++|+++++++.+++|++.|+|||+ ||++||.+|++|+++.+.+++++.+++++++.+++ +.
T Consensus 295 ~~G~a~~al~~a~~ya~~R~qfG~-------pi~~~q~vq~~la~~~~~~~aar~l~~~aa~~~d~-------g~----- 355 (436)
T 2ix5_A 295 PIGISMGIYDMCHRYLKERKQFGA-------PLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYET-------GQ----- 355 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC-----
T ss_pred HHHHHHHHHHHHHHHHHhCeeCCc-------chhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----
Confidence 999999999999999999999998 99999999999999999999999999999887652 11
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 318 EAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 318 ~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
.....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+++
T Consensus 356 ~~~~~as~aK~~a~e~a~~v~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~~Gt~ei~~~~iar~llg 424 (436)
T 2ix5_A 356 MTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTG 424 (436)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBGGGSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhC
Confidence 124557899999999999999999999999999999999999999999999999999999999999875
No 26
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=2e-50 Score=421.38 Aligned_cols=317 Identities=23% Similarity=0.286 Sum_probs=277.0
Q ss_pred HHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcc--hhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccc
Q 008966 16 AYAWKRIIELRLS----EEE-ASMLRSSV------------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 76 (547)
Q Consensus 16 ~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~--~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~ 76 (547)
.++|+.+.+.||. |++ ||.+.+.. +.+. .+.+|..++..+|..+|+++||++|+|++.+|+
T Consensus 45 ~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~ 124 (385)
T 2eba_A 45 THLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGE 124 (385)
T ss_dssp GGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 4579999999976 554 55443321 1133 345676677888999999999999999999999
Q ss_pred eeeEEeccCCCCCCCC-CCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeec
Q 008966 77 IIGCYAQTELGHGSNV-QGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 155 (547)
Q Consensus 77 ~~g~~a~TE~~~Gsd~-~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r 155 (547)
+++|+++|||++|||+ .+++|+|+++ +|+|+|| |+|+|+|| +..||+++|+|+++ ++ + +++|+||
T Consensus 125 ~~~~~a~tEp~~Gsd~~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~-~g--~-~~~flV~-- 190 (385)
T 2eba_A 125 MVGCFGLTEPDGGSDPYGNMKTRARRE--GDTWVLN-----GTKMWITN-GNLAHLAVIWAKDE-GG--E-VLGFLVP-- 190 (385)
T ss_dssp SCEEEECCCTTCTTSTTTTCCCEEEC----CEEEEE-----EEEEEEET-TTTCSEEEEEEECC-------EEEEEEE--
T ss_pred eEEEEEeCCCCcCCCccccCeeEEEEe--CCEEEEE-----eeeeccCC-CcccCEEEEEEEeC-CC--c-EEEEEEe--
Confidence 9999999999999999 9999999987 7899999 99999999 89999999999975 22 2 8899999
Q ss_pred CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966 156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 235 (547)
Q Consensus 156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~ 235 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++| . .|.++. .....+...|+.++
T Consensus 191 -----~~~pGv~v~~~~~~~G---~~~~~~~~v~f~~v~Vp~~~~l-~------~~~g~~------~~~~~l~~~r~~~a 249 (385)
T 2eba_A 191 -----TDTPGFQAREVKRKMS---LRASVTSELVLEEVRVPESLRL-P------KALGLK------APLSCLTQARFGIA 249 (385)
T ss_dssp -----TTSTTEEEEECCSBSS---SCSSCEEEEEEEEEEEEGGGBC-T------TCCSTH------HHHHHHHHHHHHHH
T ss_pred -----CCCCCeEecccccccc---cccCceeEEEEccEEEcHHHcc-C------CCchHH------HHHHHHHHHHHHHH
Confidence 7789999999999999 9999999999999999999999 3 344443 55667788999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966 236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 315 (547)
Q Consensus 236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (547)
+.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.++++++..+++ +.
T Consensus 250 a~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------g~--- 312 (385)
T 2eba_A 250 WGAMGALEAVYEEAVAFAKSRSTFGE-------PLAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKDE-------GK--- 312 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCBSSSS-------BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC---
T ss_pred HHHHHHHHHHHHHHHHHHhhCeeCCe-------eHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC---
Confidence 99999999999999999999999998 99999999999999999999999999999887652 11
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 316 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 316 ~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+|+
T Consensus 313 --~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~~~~~~ia~~llg 381 (385)
T 2eba_A 313 --LTPAQVSLAKRQNVWKALQAARMARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREITG 381 (385)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCcChHHHHHHhccCceeeCChHHHHHHHHHHHHhC
Confidence 134568899999999999999999999999999999999999999999999999999999999999875
No 27
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.9e-50 Score=423.58 Aligned_cols=317 Identities=22% Similarity=0.294 Sum_probs=281.6
Q ss_pred HHHHHHHHHHcCCC----HHHHhhhhhhc------------CCcc--hhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccc
Q 008966 15 AAYAWKRIIELRLS----EEEASMLRSSV------------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 76 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~~~~~~~~~------------~~~~--~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~ 76 (547)
+.++|+.+.+.||. ++.||.+.+.. +.+. .+.+|..++...|..+|+++||++|+|++.+|+
T Consensus 59 ~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~ 138 (399)
T 3swo_A 59 PSELAKEFGNLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGD 138 (399)
T ss_dssp CTTHHHHHHHHTCTTTTSCSTTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHCCCCcCChhhhCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCC
Confidence 45689999999875 22244443221 1132 345676677889999999999999999999999
Q ss_pred eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeecC
Q 008966 77 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRS 156 (547)
Q Consensus 77 ~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r~ 156 (547)
+++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|++| +..||+++|+|+++ .|+++|+||
T Consensus 139 ~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-----G~K~~vs~-a~~Ad~~~v~a~~~-----~g~~~flV~--- 202 (399)
T 3swo_A 139 AIGCFGLTEPDFGSNPAGMRTRARRD--GSDWILN-----GTKMWITN-GNLADVATVWAQTD-----DGIRGFLVP--- 202 (399)
T ss_dssp SCEEEECCBTTBSSCGGGCCCEEEEE--TTEEEEE-----EEEEEEET-TTTCSEEEEEEBCT-----TSCEEEEEE---
T ss_pred eeeEEEecCCCCCCCCccceEEEEEe--CCEEEEE-----EEEEeECC-CCccCEEEEEEEeC-----CceEEEEEe---
Confidence 99999999999999999999999998 7899999 99999999 99999999999974 358999999
Q ss_pred CCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHHH
Q 008966 157 LEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 236 (547)
Q Consensus 157 ~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a 236 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+ . |.++. .....+...|+.+++
T Consensus 203 ----~~~pGv~v~~~~~~~G---~r~~~~~~v~fd~v~Vp~~~~lg------~-~~g~~------~~~~~l~~~r~~~aa 262 (399)
T 3swo_A 203 ----TDTPGFTANEIHRKLS---LRASVTSELVLDNVRLPASAQLP------L-AEGLS------APLSCLNEARFGIVF 262 (399)
T ss_dssp ----TTSTTEEEEECCCBSS---CCSSCEEEEEEEEEEECGGGBCT------T-CCSTH------HHHHHHHHHHHHHHH
T ss_pred ----CCCCCeEeecCcCccc---CCCCceeEEEEccEEEcHHHcCC------C-ChhHH------HHHHHHHHHHHHHHH
Confidence 7789999999999999 99999999999999999999998 2 44444 667788899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCh
Q 008966 237 DASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTL 316 (547)
Q Consensus 237 ~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (547)
.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.+++ +
T Consensus 263 ~~~G~a~~al~~a~~~a~~R~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~----- 323 (399)
T 3swo_A 263 GALGAARDSLETTIAYTQSREVFDK-------PLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDA-------E----- 323 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------T-----
T ss_pred HHHHHHHHHHHHHHHHHhcCeeCCc-------chhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C-----
Confidence 9999999999999999999999999 99999999999999999999999999999887752 1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 317 PEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 317 ~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
.+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+|+
T Consensus 324 ~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg 393 (399)
T 3swo_A 324 GVRPEQISLGKLNNVREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTG 393 (399)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBSSSTHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHHHhhcceeecCHHHHHHHHHHHHHcC
Confidence 1235678999999999999999999999999999999999999999999999999999999999999986
No 28
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=6.1e-50 Score=419.58 Aligned_cols=319 Identities=19% Similarity=0.264 Sum_probs=283.0
Q ss_pred HHHHHHHHHcCCC----HHH-Hhhhh--hhc------------CCcch--hHhhhhhhHH-HHhcCCCHHHHHhHhHHHh
Q 008966 16 AYAWKRIIELRLS----EEE-ASMLR--SSV------------DEPAF--TDLHWGMFVP-AIKGQGTDEQHQKWLPLAY 73 (547)
Q Consensus 16 ~~~~~~~~~~g~~----~~~-~~~~~--~~~------------~~~~~--~~~h~~l~~~-~i~~~Gt~~q~~~~l~~i~ 73 (547)
.++|+.+.+.||. |++ ||.+. +.. +.+.+ +.+| .++.. +|..+|+++||++|+|++.
T Consensus 40 ~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~~l~~~g~~~q~~~~l~~~~ 118 (397)
T 3mpi_A 40 EEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNME-VLGCAYTILTYGSEALKKKYVPKLS 118 (397)
T ss_dssp TTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH-TTTTHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHHhhCchHHHHHHHH-HHhHHHHHHHhCCHHHHHHHHHHHh
Confidence 6789999999977 555 55554 332 11333 4455 45666 8999999999999999999
Q ss_pred ccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEE-
Q 008966 74 KMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIV- 152 (547)
Q Consensus 74 ~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV- 152 (547)
+|++++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|+|| +..||+++|+|++..+++..|+.+|+|
T Consensus 119 ~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~ln-----G~K~~~s~-~~~Ad~~~v~a~~~~~~~~~g~~~flV~ 190 (397)
T 3mpi_A 119 SAEFLGGFGITEPDAGSDVMAMSSTAEDK--GDHWLLN-----GSKTWISN-AAQADVLIYYAYTDKAAGSRGLSAFVIE 190 (397)
T ss_dssp TTSSCCCEECCBTTBSSCGGGCCCEEEEC--SSEEEEE-----EEEEEEET-TTTCSSEEEEEESCGGGGGGSEEEEEEC
T ss_pred CCCeEEEEEecCCCCCCCcccCeEEEEEe--CCEEEEE-----EEEEeeCC-CcccCEEEEEEEcCCCCCCCceEEEEEE
Confidence 99999999999999999999999999988 7899999 99999999 899999999999876555678999999
Q ss_pred eecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHH
Q 008966 153 QLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQ 232 (547)
Q Consensus 153 ~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~ 232 (547)
| .+.|||++ +.|+++| +++++++.|.||||+||.+++|+. .|.++. .....+...|+
T Consensus 191 ~-------~~~~Gv~v-~~~~~~G---~~~~~~~~v~fddv~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~ 247 (397)
T 3mpi_A 191 P-------RNFPGIKT-SNLEKLG---SHASPTGELFLDNVKVPKENILGK------PGDGAR------IVFGSLNHTRL 247 (397)
T ss_dssp T-------TTSTTEEE-EECCCSS---CTTSCEEEEEEEEEEEEGGGEESS------TTCHHH------HHHHHHHHHHH
T ss_pred c-------CCCCCeEe-ccCcccc---CcCCceeEEEEeeEEECHHHcCCC------CCchHH------HHHHHHHHHHH
Confidence 8 77899999 8999999 999999999999999999999983 566554 66777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008966 233 TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND 312 (547)
Q Consensus 233 ~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 312 (547)
.+++.++|+++++++.+++|++.|+|||. ||.++|.+|++|+++.+.+++++.+++++++.+++ +.
T Consensus 248 ~~aa~~lG~a~~al~~a~~~a~~R~~fg~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~-------~~ 313 (397)
T 3mpi_A 248 SAAAGGVGLAQACLDAAIKYCNERRQFGK-------PIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDE-------GR 313 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcccCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC
Confidence 99999999999999999999999999998 99999999999999999999999999999887652 11
Q ss_pred CCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHH-HHH
Q 008966 313 FSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVA-RFL 384 (547)
Q Consensus 313 ~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia-~~l 384 (547)
.+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..|+ |.+
T Consensus 314 ----~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l 382 (397)
T 3mpi_A 314 ----LNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQL 382 (397)
T ss_dssp ----TEEHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHTTHHHHSSSCHHHHHHHHHHHHH
T ss_pred ----CccHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeecCCCCHHHHHhhccceeeecCHHHHHHHHHHHHhc
Confidence 23456789999999999999999999999999999999999999999999999999999999999 765
No 29
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=2.3e-49 Score=414.47 Aligned_cols=320 Identities=22% Similarity=0.274 Sum_probs=278.0
Q ss_pred HHHHHHHHHHcCCC----HHHHhhhhhhc------------CCcc--hhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccc
Q 008966 15 AAYAWKRIIELRLS----EEEASMLRSSV------------DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 76 (547)
Q Consensus 15 ~~~~~~~~~~~g~~----~~~~~~~~~~~------------~~~~--~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~ 76 (547)
+.++|+.+.+.||. ++.||.+.+.. +.+. .+.+|..++..+|..+|+++||++|+|++.+|+
T Consensus 47 ~~~~~~~l~~~Gl~~l~~~~~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~ 126 (392)
T 1siq_A 47 HREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGE 126 (392)
T ss_dssp CTHHHHHHHHTTCSSTTCEETTEECCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhCCCCcccHHhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 34679999999876 22244332221 1122 234566667788999999999999999999999
Q ss_pred eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeecC
Q 008966 77 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRS 156 (547)
Q Consensus 77 ~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r~ 156 (547)
+++|+++|||++|||+.+++|+|++++++|+|+|| |+|+|+|| +..||+++|+|++.. .++++|+||
T Consensus 127 ~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~ln-----G~K~~vs~-~~~Ad~~~v~a~~~~----g~~~~flV~--- 193 (392)
T 1siq_A 127 LLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLN-----GTKTWITN-SPMADLFVVWARCED----GCIRGFLLE--- 193 (392)
T ss_dssp SCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEE-----EEEEEEET-GGGCSEEEEEEEETT----SCEEEEEEE---
T ss_pred eEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEE-----EEEEeecC-CcccCEEEEEEEECC----CCEEEEEEe---
Confidence 99999999999999999999999998667899999 99999999 899999999999852 248899999
Q ss_pred CCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHHH
Q 008966 157 LEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 236 (547)
Q Consensus 157 ~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a 236 (547)
.+.|||++.+.|+++| +++++++.|.||||+||.+++|+. . .++. .....+...|+.+++
T Consensus 194 ----~~~pGv~v~~~~~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~------~-~g~~------~~~~~l~~~r~~~aa 253 (392)
T 1siq_A 194 ----KGMRGLSAPRIQGKFS---LRASATGMIIMDGVEVPEENVLPG------A-SSLG------GPFGCLNNARYGIAW 253 (392)
T ss_dssp ----TTCTTEECCBCCCCSS---STTSCEEEEEEEEEEEEGGGBCTT------C-CSSH------HHHHHHHHHHHHHHH
T ss_pred ----CCCCCeEecccccccc---ccCCceEEEEEccEEECHHHcCCc------c-cCHH------HHHHHHHHHHHHHHH
Confidence 7789999999999999 999999999999999999999973 1 2222 455677889999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCh
Q 008966 237 DASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTL 316 (547)
Q Consensus 237 ~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (547)
.++|+++++++.+++|++.|+|||+ ||.++|.+|++|+++.+.+++++.+++++++.+++ +.
T Consensus 254 ~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~d~-------~~---- 315 (392)
T 1siq_A 254 GVLGASEFCLHTARQYALDRMQFGV-------PLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQ-------DK---- 315 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TC----
T ss_pred HHHHHHHHHHHHHHHHHhcCeeCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----
Confidence 9999999999999999999999998 99999999999999999999999999999877652 11
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHH
Q 008966 317 PEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 317 ~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 386 (547)
.....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++++++..+++.+++
T Consensus 316 -~~~~~~~~aK~~~~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~llg 384 (392)
T 1siq_A 316 -AAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 384 (392)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcHHHHHhhCcCCeeecCcHHHHHHHHHHHHhC
Confidence 124567899999999999999999999999999999999999999999999999999999999999875
No 30
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=2.4e-48 Score=412.54 Aligned_cols=331 Identities=15% Similarity=0.169 Sum_probs=279.2
Q ss_pred HHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchhH-hhhhhhHHHHhcCCCHHHHHhHhHHHhcc--
Q 008966 16 AYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKM-- 75 (547)
Q Consensus 16 ~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~~-~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g-- 75 (547)
.++|+.+.+.||. |++ ||.+.+.. +.++++. .+..++...|..+|+++ |++|||++.+|
T Consensus 48 ~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~l~~~g~~~-~~~~l~~~~~G~g 126 (438)
T 3mkh_A 48 QPTYAAAVSAGILKGQISPAHGGTGGTLIESAILVEECYSVEPSAALTIFATGLGLTPINLAAGPQ-HAEFLAPFLSGEG 126 (438)
T ss_dssp HHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCGG-GHHHHGGGSSSCS
T ss_pred HHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHhhCCHH-HHHHHHHHhcCCC
Confidence 6899999999987 554 55543332 1122221 12235566788899999 89999999996
Q ss_pred ceeeEEeccCCCCCC-----CCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCC-----CCcEEEEEEEEcc-----
Q 008966 76 EIIGCYAQTELGHGS-----NVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGK-----VSTHAVVYARLIT----- 140 (547)
Q Consensus 76 ~~~g~~a~TE~~~Gs-----d~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~-----~A~~~~V~A~~~~----- 140 (547)
++++|+++|||++|| |+.+++|+|+++ +|+|+|| |+|+|+|| +. .||+++|+|++..
T Consensus 127 ~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~--g~g~~ln-----G~K~~is~-a~~~~~~~Ad~~~v~a~~~~~~~~~ 198 (438)
T 3mkh_A 127 SPLASLVFSEPGGVANALEKGAPGFQTTARLE--GDEWVIN-----GEKMWATN-CAGWDFKGCDLACVVCRDATTPLEE 198 (438)
T ss_dssp CCCEEEECCCTTCCTTTTCTTSCCCSCEEEEE--TTEEEEE-----EEECSCTT-TTCTTSSCCSEEEEEEEECSSCCCT
T ss_pred CceEEEEEccCCCCCCccccccccceeEEEEe--CCEEEEE-----eEEEEecC-CCccccccCcEEEEEEEecCcccCc
Confidence 589999999999998 589999999998 7999999 99999999 65 7999999999864
Q ss_pred -CCCCcceEEEEEeecCCCCCCCCCC-eEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCc
Q 008966 141 -DGQDHGVNGFIVQLRSLEDHSPLPG-ITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV 218 (547)
Q Consensus 141 -~~~~~g~~~flV~~r~~~~~~~~pG-v~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~ 218 (547)
.++..|+++|+||..+.+ ...|| |++.+.|+++| +++++++.|.||||+||.+++||. .|.++.
T Consensus 199 ~~~~~~g~~~flV~~~~~~--~~~pG~v~v~~~~~~~G---~r~~~~~~v~fddv~VP~~~~lg~------~~~g~~--- 264 (438)
T 3mkh_A 199 GQDPENKVMIILVTRADLD--RNGEGSFEVLRHVATPG---HTSVSGPHVRYTNVRVPTKNVLCP------AGQGAK--- 264 (438)
T ss_dssp TCCGGGGEEEEEEEHHHHH--HHCTTSEEEEECCCCSS---CTTCCCCEEEEEEEEEEGGGEEEC------TTTHHH---
T ss_pred ccCCCCceEEEEEecCccc--cCCCCcEEecCcCCCcC---CcCCCceEEEECcEEECHHHcCCC------CCchHH---
Confidence 223468999999932100 01388 99999999999 999999999999999999999984 566654
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC-CCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 219 PRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG-SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWL 297 (547)
Q Consensus 219 ~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg-~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~ 297 (547)
.....+..+|+.+++.++|+++++++.+++|+++|+||| + ||++||.+|++|+++.+.+++++.+++++
T Consensus 265 ---~~~~~l~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~g~~-------pi~~~q~vq~~la~~~~~~~aar~~~~~a 334 (438)
T 3mkh_A 265 ---VAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAV-------PLLERQAFADLLSGVKIQTEAARALTWKA 334 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSS-------CGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeCCCe-------eccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788889999999999999999999999999999999 6 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchh-HHH
Q 008966 298 KWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVL 376 (547)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~-~vl 376 (547)
++.+++ +. .........++++|.++++.+.++++.|+|+|||.||+.+++++|+|||++...+++|++ +++
T Consensus 335 a~~~d~-------~~-~~~~~~~~~~~~aK~~a~e~a~~~~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~~~v~ 406 (438)
T 3mkh_A 335 AHAMEN-------GP-GDYDARRELALAAKVFCSEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIR 406 (438)
T ss_dssp HHHHHH-------CS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCTTSSHHHHHHHHTHHHHSSSCTTTTH
T ss_pred HHHHhC-------CC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhccCCCcHHHHHHHhheeeeecCChHHHH
Confidence 887763 11 111223445788999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHH
Q 008966 377 LLQVARFLMKT 387 (547)
Q Consensus 377 ~~~ia~~ll~~ 387 (547)
+.++++.+|+.
T Consensus 407 ~~~i~r~ll~~ 417 (438)
T 3mkh_A 407 RRHLQQLMLKP 417 (438)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHHhc
Confidence 99999999975
No 31
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=4.2e-46 Score=395.41 Aligned_cols=325 Identities=16% Similarity=0.122 Sum_probs=272.8
Q ss_pred HHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcch--hHhhhhhhHHHHhcCCCHHHHHhHhHHHh--c
Q 008966 16 AYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAY--K 74 (547)
Q Consensus 16 ~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~--~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~--~ 74 (547)
.++|+.+.+.||. |++ ||.+.+.. +.+++ +.+| .++..+|..+|+++||++|+|++. +
T Consensus 46 ~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~~~ 124 (439)
T 2c12_A 46 RPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVAT-ALGLMPVILCDSPSLQEKFLKPFISGE 124 (439)
T ss_dssp HHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHHHHHTTCCTTHHHHHHH-HHHHHHHHHSSCHHHHHHHTGGGGSSC
T ss_pred HHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHh-HHHHHHHHHhCCHHHHHHHHHHHhhcC
Confidence 6899999999987 444 55443221 22333 3345 356678899999999999999999 6
Q ss_pred cceeeEEeccCCCCCC-----CCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCC-----CCcEEEEEEEE-c----
Q 008966 75 MEIIGCYAQTELGHGS-----NVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGK-----VSTHAVVYARL-I---- 139 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gs-----d~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~-----~A~~~~V~A~~-~---- 139 (547)
|++++|+++|||++|| |+.+++|+|+++ +|+|+|| |+|+|+|| +. .||+++|+|++ .
T Consensus 125 G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~--~~g~~ln-----G~K~~is~-~~~~~~~~Ad~~~v~ar~~~~~~~ 196 (439)
T 2c12_A 125 GEPLASLMHSEPNGTANWLQKGGPGLQTTARKV--GNEWVIS-----GEKLWPSN-SGGWDYKGADLACVVCRVSDDPSK 196 (439)
T ss_dssp SCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEE--TTEEEEE-----EEEECCTT-TTTTTSSCCSEEEEEEEECSCTTS
T ss_pred CCEEEEEEecCCCCCCCccccccccceeEEEEc--CCEEEEE-----eEEEeecC-CCccccccCcEEEEEEEcCCcccC
Confidence 9999999999999998 588899999998 7899999 99999998 65 89999999998 5
Q ss_pred cC----CCCcceEEEEEeecCCCCCCCCC------CeEEccCCCCccccccCCccceeEEecceecCccccccccccccC
Q 008966 140 TD----GQDHGVNGFIVQLRSLEDHSPLP------GITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTR 209 (547)
Q Consensus 140 ~~----~~~~g~~~flV~~r~~~~~~~~p------Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~ 209 (547)
++ ++..|+++|+||. +.| ||++.+.|+++| +++++++.|.||||+||.+++|+.
T Consensus 197 ~~~~~~~~~~g~~~flV~~-------~~pGv~~~~Gv~v~~~~~~~G---~r~~~~~~v~fddv~VP~~~~lg~------ 260 (439)
T 2c12_A 197 PQDPNVDPATQIAVLLVTR-------ETIANNKKDAYQILGEPELAG---HITTSGPHTRFTEFHVPHENLLCT------ 260 (439)
T ss_dssp CCCTTSCGGGGEEEEEECH-------HHHHTSCGGGEEEEECCCBSS---CTTCCCCEEEEEEEEEEGGGBCSC------
T ss_pred ccccccCCCCceEEEEEEC-------CCCcccCCCceEeCCcccccc---cCCCCceEEEEccEEecHHHcCCC------
Confidence 32 3446899999994 445 899999999999 999999999999999999999983
Q ss_pred CcceeccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccCCCCCCCcccccchHHHHHHHHHHHHHHH
Q 008966 210 EGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAV-RRQFGSKNGGPETQVIDYKTQQNRLFPLLASAY 288 (547)
Q Consensus 210 ~G~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~-R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~ 288 (547)
.|.++. . +....+...|+.+++.++|+++++++.+++|++. |++||+ ||+++|.+|++|+++.+.++
T Consensus 261 ~~~g~~----~-~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~rr~~~G~-------~i~~~q~vq~~la~~~~~~~ 328 (439)
T 2c12_A 261 PGLKAQ----G-LVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSK-------HIIEHQSVADKLIDCKIRLE 328 (439)
T ss_dssp TTHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSS-------CGGGSHHHHHHHHHHHHHHH
T ss_pred CCccHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceeeCCe-------ehhccHHHHHHHHHHHHHHH
Confidence 454432 0 2345677899999999999999999999999996 778888 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhccccccccc
Q 008966 289 AFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACT 368 (547)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~ 368 (547)
+++.+++++++.+++ +. .........++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+
T Consensus 329 aar~~~~~aa~~~~~-------~~-~~~~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i 400 (439)
T 2c12_A 329 TSRLLVWKAVTTLED-------EA-LEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPL 400 (439)
T ss_dssp HHHHHHHHHHHHHTC-------TT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSSHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhC-------CC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEcCCChHHHHHHhhhccee
Confidence 999999999876641 11 1111234568999999999999999999999999999999999999999999999
Q ss_pred ccchh-HHHHHHHHHHHH
Q 008966 369 YEGDN-IVLLLQVARFLM 385 (547)
Q Consensus 369 ~eG~~-~vl~~~ia~~ll 385 (547)
++|++ ++++..+++.+.
T Consensus 401 ~~G~~~~~~~~~i~~~l~ 418 (439)
T 2c12_A 401 FDGGNIGLRRRQMQRVMA 418 (439)
T ss_dssp SSSCTTTTHHHHHHHHHT
T ss_pred ecCChHHHHHHHHHHHHh
Confidence 99988 799999987544
No 32
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=6.1e-46 Score=388.98 Aligned_cols=328 Identities=14% Similarity=0.069 Sum_probs=267.4
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhh-hhhc------------CCcch--hHhhhhhhHHHH--hcCCCHHHH---HhH
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASML-RSSV------------DEPAF--TDLHWGMFVPAI--KGQGTDEQH---QKW 68 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~-~~~~------------~~~~~--~~~h~~l~~~~i--~~~Gt~~q~---~~~ 68 (547)
.+.++|+.+.+.||. |++ ||.+ .+.. +.+.+ +.+|..++...+ ..+|+++|| ++|
T Consensus 40 ~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~ 119 (395)
T 3mxl_A 40 FPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERL 119 (395)
T ss_dssp CCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHH
Confidence 456889999999976 454 5555 3321 11333 345554444443 366999999 999
Q ss_pred hHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceE
Q 008966 69 LPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVN 148 (547)
Q Consensus 69 l~~i~~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~ 148 (547)
+|++.+|+.++|+++|||++|+ ..++|+ + +|+|+|| |+|+|+|| +..||+++|+|++.++++..|++
T Consensus 120 l~~~~~g~~~~~~a~tEp~~~~--~~~~t~---~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~~~~~~g~~ 186 (395)
T 3mxl_A 120 LRAMAEGEAAVCGALKDAPGVV--TELHSD---G--AGGWLLS-----GRKVLVSM-APIATHFFVHAQRRDDDGSVFLA 186 (395)
T ss_dssp HHHHHHTSCCEECCCSBCTTCC--CEEEEC---S--SSCEEEE-----EEEEEETT-GGGCSEECCCEEEECTTSCEEEE
T ss_pred HHHHhcCCcEEEEEecCCCCCC--CceEEe---c--CCEEEEe-----eEEEEecC-ccccCEEEEEEEeCCCCCCCceE
Confidence 9999999999999999998763 344443 3 7899999 99999999 99999999999998766667899
Q ss_pred EEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHH
Q 008966 149 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMV 228 (547)
Q Consensus 149 ~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~ 228 (547)
+|+|| .+.|||++.+.|+++| +++++++.|.||||+||.+++|+.. +.|.++. .....+.
T Consensus 187 ~flV~-------~~~pGv~v~~~~~~~G---~r~~~~~~v~f~~v~Vp~~~~lg~~----~~g~g~~------~~~~~~~ 246 (395)
T 3mxl_A 187 VPVVH-------RDAPGLTVLDNWDGLG---MRASGTLEVVFDRCPVRADELLERG----PVGARRD------AVLAGQT 246 (395)
T ss_dssp CCCEE-------TTCTTEEEECCCCBSS---CTTSCCEEEEEEEEEECGGGCCEEE----ESSCCCT------THHHHHH
T ss_pred EEEEE-------CCCCceEeCCCchhcC---CCCCCcceEEEcceEcCHHHhcCCC----CCCccHH------HHHhhhH
Confidence 99999 7789999999999999 9999999999999999999999831 2344433 3333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008966 229 YVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRL 308 (547)
Q Consensus 229 ~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 308 (547)
..|+.+++.++|+++++++.+++|++ |+ ||.++|.+|++|+++.+.+++++.+++++++.++......
T Consensus 247 ~~r~~~aa~~~G~a~~al~~a~~~a~-----~r-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~ 314 (395)
T 3mxl_A 247 VSSITMLGIYAGIAQAARDIAVGFCA-----GR-------GGEPRAGARALVAGLDTRLYALRTTVGAALTNADAASVDL 314 (395)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHH-----TT-------CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-----CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 68899999999999999999999998 34 8999999999999999999999999999998887543221
Q ss_pred hcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccc-cccchhHHHHHHHHHHHHH
Q 008966 309 QANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPAC-TYEGDNIVLLLQVARFLMK 386 (547)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~-~~eG~~~vl~~~ia~~ll~ 386 (547)
..............++++|.++++.+.++++.|+|+|||.||+.+++++++|||++... +++|++++++.++++.+|+
T Consensus 315 ~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~~g~~~~~~~~ia~~~Lg 393 (395)
T 3mxl_A 315 SGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSGQALG 393 (395)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSHHHHHHHHGGGGGGCSSCCHHHHHHHHHHHHSC
T ss_pred ccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhccCCCcHHHHHHHHHhccccCCCCHHHHHHHHHHHHhC
Confidence 11111011234467788999999999999999999999999999999999999999999 9999999999999999875
No 33
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=100.00 E-value=1.2e-44 Score=390.43 Aligned_cols=323 Identities=18% Similarity=0.176 Sum_probs=275.2
Q ss_pred HHHHHHHHHcCCC------HHH-Hhhhhhh----------cCCcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccce-
Q 008966 16 AYAWKRIIELRLS------EEE-ASMLRSS----------VDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEI- 77 (547)
Q Consensus 16 ~~~~~~~~~~g~~------~~~-~~~~~~~----------~~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~- 77 (547)
.+.++.+.+.||. |.+ |+..... .....|+.+|. .++++|..+| ++||++|+|++.+|++
T Consensus 89 ~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~~~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~sge~~ 166 (541)
T 3djl_A 89 HLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLLSDRYD 166 (541)
T ss_dssp HHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHHHHHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHTCSCCC
T ss_pred HHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHhCCCcc
Confidence 4677888888866 122 3332111 12345666666 4677888899 9999999999999998
Q ss_pred ------------eeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCc
Q 008966 78 ------------IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDH 145 (547)
Q Consensus 78 ------------~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~ 145 (547)
++|+++|||++|||+.+++|+|++++ +|+|+|| |+|+|+| +.+||+++|+|+++ .
T Consensus 167 p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~-~g~y~Ln-----G~K~f~S--a~~Ad~~lVlArt~-----~ 233 (541)
T 3djl_A 167 SHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLE-DGSYRLV-----GHKWFFS--VPQSDAHLVLAQTA-----G 233 (541)
T ss_dssp CCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECT-TSCEEEE-----EEEEEEE--CTTSSEEEEEEEET-----T
T ss_pred cccccccccccceeEEEeccCCcCCCcccceeEEEEcC-CCeEEEE-----EEEEeec--ccccCEEEEEEEEC-----C
Confidence 88999999999999999999999874 5789999 9999998 68999999999984 5
Q ss_pred ceEEEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHH
Q 008966 146 GVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYG 225 (547)
Q Consensus 146 g~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~ 225 (547)
|+++|+||.+.++ ...+||+|.+.|+++| ++++++++|.|+||+ +++|| +.|.++. .+..
T Consensus 234 Gis~flVp~~~p~--~~~~Gv~i~~~~~~~G---~rgt~s~~v~fddv~---~~llG------~~g~G~~------~~~~ 293 (541)
T 3djl_A 234 GLSCFFVPRFLPD--GQRNAIRLERLKDKLG---NRSNASCEVEFQDAI---GWLLG------LEGEGIR------LILK 293 (541)
T ss_dssp EEEEEEEESBCTT--SCBCSEEEEEECCCSS---CTTSCEEEEEEEEEE---EEEES------STTCHHH------HTHH
T ss_pred ceEEEEEecCCCC--CCcCCeEEeeccccCC---CcCCceeEEEEccce---eeeee------cCCchHH------HHHH
Confidence 7999999944321 1234999999999999 999999999999995 88998 4676665 6677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 226 TMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT 305 (547)
Q Consensus 226 ~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~ 305 (547)
.+..+|+.+++.++|+++++++.+++|++.|+|||. ||+++|.+|++|+++.+.+++++.+.++++..+++.
T Consensus 294 ~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~~fG~-------~i~~~p~vq~~La~~~~~~eaaral~~~aa~~~d~~- 365 (541)
T 3djl_A 294 MGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGN-------PLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRR- 365 (541)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCC-------chhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 888999999999999999999999999999999998 999999999999999999999999999998877631
Q ss_pred HhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHH
Q 008966 306 QRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 385 (547)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 385 (547)
.+.......+..++++|.++++.+.++++.|+|+|||+||+.+++++++|||++...++||++++++..++|.++
T Consensus 366 -----~~~~~~~~~~~~~~~aK~~ase~a~~~~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~eGt~ei~~~~i~r~l~ 440 (541)
T 3djl_A 366 -----ADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLN 440 (541)
T ss_dssp -----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred -----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCcHHHHHHhhhhhheeCCcHHHHHHHHHHHHH
Confidence 010011235677899999999999999999999999999999999999999999999999999999999999987
Q ss_pred H
Q 008966 386 K 386 (547)
Q Consensus 386 ~ 386 (547)
+
T Consensus 441 ~ 441 (541)
T 3djl_A 441 K 441 (541)
T ss_dssp H
T ss_pred h
Confidence 6
No 34
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=2.1e-44 Score=382.38 Aligned_cols=329 Identities=13% Similarity=0.065 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhh-hhhc------------CCcch--hHhhhhhhHHHH--hcCCCHHH---HHhH
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASML-RSSV------------DEPAF--TDLHWGMFVPAI--KGQGTDEQ---HQKW 68 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~-~~~~------------~~~~~--~~~h~~l~~~~i--~~~Gt~~q---~~~~ 68 (547)
.+.++|+.+.+.||. |++ ||.+ .... +.+.+ +.+|..++...+ ..+||++| |++|
T Consensus 51 ~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~ 130 (439)
T 3m9v_A 51 FPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERI 130 (439)
T ss_dssp CCHHHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 456789999999976 444 5554 3221 11333 445554444443 46699999 9999
Q ss_pred hHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceE
Q 008966 69 LPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVN 148 (547)
Q Consensus 69 l~~i~~g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~ 148 (547)
||++.+|++++|+++|||+++ +..++|+ + +|+|+|| |+|+|+|| +.+||+++|+|++.++++.+|++
T Consensus 131 l~~l~~g~~~~~~a~tEp~~~--~~~~~t~---~--~~g~vln-----G~K~~~s~-a~~Ad~~~v~art~~~~~~~g~~ 197 (439)
T 3m9v_A 131 LRGMVAGDAVVCSGIKDHHTA--VTTLRPD---G--AGGWLLS-----GRKTLVSM-APVGTHFVINARTDGTDGPPRLA 197 (439)
T ss_dssp HHHHHHTCCCEEEECEECTTC--CCEEEEC---S--SSCEEEE-----EEEEEETT-GGGCSEEEECEEECC--CCCCEE
T ss_pred HHHHhCCCceEEEeecCCCCC--CCceeec---c--CCEEEEE-----eEEEeecC-ccccCEEEEEEEecCCCCCceeE
Confidence 999999999999999999854 4455544 3 7899999 99999999 89999999999998766667899
Q ss_pred EEEEeecCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHH
Q 008966 149 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMV 228 (547)
Q Consensus 149 ~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~ 228 (547)
+|+|| .+.|||+|.+.|+++| +++++++.|.||||+||.+++|+.. +.|.++. .....+.
T Consensus 198 ~flVp-------~~~pGv~i~~~~~~~G---~~~~~~~~v~fddv~VP~~~~lg~~----~~g~g~~------~~~~~~~ 257 (439)
T 3m9v_A 198 SPVVT-------RDTPGFTVLDNWDGLG---MRASGTVDIVFDDCPIPADHVLMRD----PVGARND------AVLAGQT 257 (439)
T ss_dssp EEEEE-------TTCTTEEECCCCCCSS---CTTSCCEEEEEEEEEECGGGEEECC----C--CCCG------GGHHHHH
T ss_pred EEEEE-------CCCCCeEECCCcccCC---cCCCCceeEEEeeeEcCHHHccCCC----CCCchHH------HHhhchH
Confidence 99999 6789999999999999 9999999999999999999999831 2344433 2333345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008966 229 YVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRL 308 (547)
Q Consensus 229 ~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 308 (547)
.+|+.+++.++|+++++++.+++|++. + ||.++|.+|++|+++.+.+++++.++++++..++......
T Consensus 258 ~~r~~~aa~~~G~a~~al~~a~~~a~~-----r-------~i~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~~~~~~ 325 (439)
T 3m9v_A 258 VSSVSVLGVYVGVAQAAYDTAVAALER-----R-------PEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADL 325 (439)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHT-----C-------SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-----C-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 588899999999999999999999983 3 7899999999999999999999999999988776543211
Q ss_pred hcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccc-cccchhHHHHHHHHHHHHHH
Q 008966 309 QANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPAC-TYEGDNIVLLLQVARFLMKT 387 (547)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~-~~eG~~~vl~~~ia~~ll~~ 387 (547)
..............++++|.++++.+.++++.|+|+|||.||+.+++++++|||++... +++|++++.+..+++.+|+.
T Consensus 326 ~~~~~~~~~~~~~~~~~ak~~a~~~a~~v~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~~~~~gt~~~~~~~i~~~~lg~ 405 (439)
T 3m9v_A 326 SGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALGI 405 (439)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSTTSHHHHHHHHTTGGGTSSSCCHHHHHHHHHHHHTTC
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhcCCChHHHHHHHHHhhhhhCCCchHHHHHHHHHHHhCC
Confidence 10000001234556788999999999999999999999999999999999999999999 99999999999999999863
No 35
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=3.8e-44 Score=377.53 Aligned_cols=322 Identities=11% Similarity=-0.056 Sum_probs=264.7
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcch--hHhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~--~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+.++|+.+.+.||. |++ ||.+.+.. +.+.+ +.+| .++..+|..+|+++||++|+| +
T Consensus 49 ~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~---~ 124 (414)
T 2or0_A 49 LTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGASGWVTGIV-GVHPWELAFADPQVQEEIWGE---D 124 (414)
T ss_dssp CCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-TTHHHHHTTSCHHHHHHHHSS---C
T ss_pred CCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHhCCHHHHHHHHcc---C
Confidence 355789999999976 444 55443322 12333 3445 367788999999999999999 7
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCc---ceEEEE
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDH---GVNGFI 151 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~---g~~~fl 151 (547)
|+.++|+++| | +|+|+++ +|+|+|| |+|+|+|| +..||+++|+|++..+++.. |+++|+
T Consensus 125 g~~~~a~a~t-p---------~t~A~~~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~~~g~~~~~g~~~fl 186 (414)
T 2or0_A 125 NDTWMASPYA-P---------MGVATPV--DGGYVLK-----GRWSFSSG-TDHCQWAFLGAMVGDGEGGIATPSSLHVI 186 (414)
T ss_dssp TTCCEECCCS-C---------CEEEEEE--TTEEEEE-----EEEEEETT-GGGCSEEEEEEEECC-----CCCSEEEEE
T ss_pred CCeEEEeccC-C---------CceeEEE--CCeEEEE-----eeEeccCC-CchhhEEEEEEEecCCCCCcccceeEEEE
Confidence 9999999988 4 6899988 7899999 99999999 89999999999986433333 899999
Q ss_pred EeecCCCCCCCCCCeEEc-cCCCCccccccCCccceeEEecceecCccccccccccccC--Cc----ceeccCchhhHHH
Q 008966 152 VQLRSLEDHSPLPGITIG-DIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTR--EG----KYVQSNVPRQLLY 224 (547)
Q Consensus 152 V~~r~~~~~~~~pGv~i~-~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~--~G----~~~~~~~~~~~~~ 224 (547)
|| .+ ||++. +.|+++| +++++++.|.||||+||.+++|+....++. +| .+.. ...
T Consensus 187 V~-------~~--gv~v~~~~~~~~G---~r~~~~~~v~fd~v~VP~~~~lg~~~~~~g~~~g~~~~~g~~------~~~ 248 (414)
T 2or0_A 187 LP-------RT--DYQIVEDTWDVIG---LRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEAGRPEPL------FNM 248 (414)
T ss_dssp EE-------GG--GCEEETTCCCBSS---CGGGCCEEEEEEEEEEEGGGEEEHHHHHHSHHHHHHTCSCSG------GGS
T ss_pred EE-------hh--hcEEecCCCcccc---CcccCCCcEEEccEEecHHHeeccccccccCCCccccCCCcc------ccc
Confidence 99 33 89999 9999999 999999999999999999999974211000 11 1111 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-CCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008966 225 GTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF-GSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTD 303 (547)
Q Consensus 225 ~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qf-g~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~ 303 (547)
..+...|+.+++.++|+++++++.+++|++.|+|| |+ ||.++|.+|++|+++.+.+++++.+++++++.+++
T Consensus 249 ~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~f~G~-------~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~ 321 (414)
T 2or0_A 249 PYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQ-------KIKEDPYVLSAIGESAAEINASRVSLIETADRFYD 321 (414)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTSC-------BGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999999999999999999 87 99999999999999999999999999999988764
Q ss_pred HHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccc-hhHHHHHHHHH
Q 008966 304 VTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEG-DNIVLLLQVAR 382 (547)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG-~~~vl~~~ia~ 382 (547)
... .+.. ...+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++| ++++++..+++
T Consensus 322 ~~~---~g~~-~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~t~~~~~~~ia~ 397 (414)
T 2or0_A 322 KVD---AGKE-ITFEERAIGRRTQIAAAWRAVRAADEIFARAGGGALHYKTPMQRFWRDAHAGLAHAVHVPGPTNHASAL 397 (414)
T ss_dssp HHH---TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTSSHHHHHHHHHHHHTSGGGCCHHHHHHHHH
T ss_pred HHh---cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhccCCchhHHHHHHHHHHcCCcccchHHHHHHHH
Confidence 432 1221 123456788999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHH
Q 008966 383 FLMK 386 (547)
Q Consensus 383 ~ll~ 386 (547)
.+|+
T Consensus 398 ~~lg 401 (414)
T 2or0_A 398 TQLG 401 (414)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 9885
No 36
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=5.5e-44 Score=373.99 Aligned_cols=326 Identities=12% Similarity=0.016 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchh--HhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~--~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+.++|+.+.+.||. |++ ||.+.+.. +.+.++ .+| .+....|..+|+++||++|+| +
T Consensus 36 ~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~---~ 111 (394)
T 2rfq_A 36 IPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSII-GVHNWHLALFSQQAQEDVWGN---D 111 (394)
T ss_dssp CCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTSCHHHHHHHHSS---C
T ss_pred CCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHHH-HHHHHHHHhCCHHHHHHHhCC---C
Confidence 356789999999976 444 55443321 123333 344 367778999999999999999 7
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEee
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 154 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~ 154 (547)
|+.++|+++| | .|+|+++ +|+|+|| |+|+|+|| +.+||+++|+|++..+++.+|+++|+||
T Consensus 112 g~~~~~~a~t-p---------~t~A~~~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~~g~~~~~~~flV~- 172 (394)
T 2rfq_A 112 TDVRISSSYA-P---------MGAGQVV--DGGYTVN-----GAWAWSSG-CDHASWAVLGGPVIKDGRPVDFVSFLIP- 172 (394)
T ss_dssp TTCCEEEECS-C---------SEEEEEE--TTEEEEE-----EEEEEETT-GGGCSEEEEEEEEEETTEEEEEEEEEEE-
T ss_pred CCeEEEeccC-C---------CceEEEe--CCeEEEe-----eeEeccCC-CcccceEEEeeeecCCCCCCceeEEEEE-
Confidence 9999999988 3 6899988 7899999 99999999 8999999999998544434589999999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCcccccccccccc--CCcceeccCchhhHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVT--REGKYVQSNVPRQLLYGTMVYVRQ 232 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~--~~G~~~~~~~~~~~~~~~l~~~r~ 232 (547)
.+ ||++.+.|+++| +++++++.|.||||+||.+++|+.....+ .+|...... .. .....+...|+
T Consensus 173 ------~~--gv~v~~~~~~~G---~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~~~~~g-~~-~~~~~~~~~r~ 239 (394)
T 2rfq_A 173 ------RE--DYRIDDVWNVVG---LRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTA-PV-YKMPWGTIHPT 239 (394)
T ss_dssp ------GG--GCEEECCCCBSS---CGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGGTTCCC-GG-GGSCHHHHHHH
T ss_pred ------hh--hcEEeCCccccc---cccCCCCceEEcceEcChHHhcccccccccCCCCcccCCC-cc-ccccHHHHHHH
Confidence 33 899999999999 99999999999999999999997421000 012100000 00 22334667899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc---ccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008966 233 TIVADASCALSRAVCIATRYSAVRR---QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQ 309 (547)
Q Consensus 233 ~~~a~~~g~~~~al~~a~~y~~~R~---qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 309 (547)
.+++.++|+++++++.+++|++.|+ |||+ ||.++|.+|++|+++.+.+++++.+++++++.+++...
T Consensus 240 ~~aa~~~G~a~~al~~a~~ya~~R~~~~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~--- 309 (394)
T 2rfq_A 240 TISAPIVGMAYGAYDAHVEHQGKRVRAAFAGE-------KAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLV--- 309 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTC-------GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcCCCCCc-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 9999999999999999999999999 9998 99999999999999999999999999999988764421
Q ss_pred cCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccc-hhHHHHHHHHHHHHH
Q 008966 310 ANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEG-DNIVLLLQVARFLMK 386 (547)
Q Consensus 310 ~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG-~~~vl~~~ia~~ll~ 386 (547)
.+.. ...+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++| ++++++..+++.+|+
T Consensus 310 ~g~~-~~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~g~~~~~~~~~i~~~llg 386 (394)
T 2rfq_A 310 AGEE-VPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYGTGEFG 386 (394)
T ss_dssp TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTCHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHTT
T ss_pred cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhcCCcHHHHHHHHHHHHcccccCchhHHHHHHHHHhC
Confidence 1221 113456778999999999999999999999999999999999999999999999999 999999999999885
No 37
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=5.5e-44 Score=377.18 Aligned_cols=327 Identities=13% Similarity=-0.002 Sum_probs=267.9
Q ss_pred HHHHHHHHHHHcCCC----HHH-Hhhhhhhc------------CCcchh--HhhhhhhHHHHhcCCCHHHHHhHhHHHhc
Q 008966 14 KAAYAWKRIIELRLS----EEE-ASMLRSSV------------DEPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYK 74 (547)
Q Consensus 14 ~~~~~~~~~~~~g~~----~~~-~~~~~~~~------------~~~~~~--~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~ 74 (547)
.+.++|+.+.+.||. |++ ||.+.+.. +.+.++ ..| .+....|..+|+++||++|+|+
T Consensus 64 ~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~--- 139 (422)
T 2jbr_A 64 VPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLL-CTHSHQIAMFSKQLQDEIWLKD--- 139 (422)
T ss_dssp CCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHTTSCHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHHH-HHHHHHHHhCCHHHHHHHHccC---
Confidence 356789999999976 554 55443321 123333 344 4677889999999999999996
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEee
Q 008966 75 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 154 (547)
Q Consensus 75 g~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~ 154 (547)
|+.++|+++| | +|+|+++ +|+|+|| |+|+|+|| +.+||+++|+|++.++++..|+++|+||
T Consensus 140 g~~~~a~a~t-p---------~t~A~~~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~~~g~~g~~~flV~- 200 (422)
T 2jbr_A 140 PDATASSSIA-P---------FGKVEEV--EGGIILN-----GDYGWSSG-CDHAEYAIVGFNRFDADGNKIYSFGVIP- 200 (422)
T ss_dssp TTCCEEEECS-C---------CSEEEEE--TTEEEEE-----EEEEEETT-GGGCSEEEEEEEEECTTSCEEEEEEEEE-
T ss_pred CCeEEEeecC-C---------CeeEEEe--CCEEEEe-----eeEeeecC-CccccEEEEEEEecCCCCCceeEEEEEE-
Confidence 8999999988 3 6899988 7899999 99999999 8999999999998754445689999999
Q ss_pred cCCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCcccccccccccc--CCcceeccCchhhHHHHHHHHHHH
Q 008966 155 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVT--REGKYVQSNVPRQLLYGTMVYVRQ 232 (547)
Q Consensus 155 r~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~--~~G~~~~~~~~~~~~~~~l~~~r~ 232 (547)
.+ ||++.+.|+++| +++++++.|.||||+||.+++|+....++ ..|.+....... .....+...|+
T Consensus 201 ------~~--gv~v~~~~~~~G---~r~~~~~~v~fddv~VP~~~~lg~~~~~~g~~~g~g~~~~~~~-~~~~~~~~~r~ 268 (422)
T 2jbr_A 201 ------RS--DYEIVDNWYAQA---IKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKI-FYTPYRPYFAS 268 (422)
T ss_dssp ------GG--GCEEECCCCBSS---SGGGCCEEEEEEEEEEEGGGEEEHHHHHHTCSTTTTSCTTCSS-SSSCHHHHHTT
T ss_pred ------cC--ceEEeCCccccC---cCCCCCCcEEEeeEEecHHHeecccccccCCCCcccccCCCcc-cccchHHHHHH
Confidence 33 899999999999 99999999999999999999998521110 013320000000 23345667899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--ccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008966 233 TIVADASCALSRAVCIATRYSAVRR--QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQA 310 (547)
Q Consensus 233 ~~~a~~~g~~~~al~~a~~y~~~R~--qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (547)
.+++.++|+++++++.+++|++.|+ |||+ ||+++|.+|++|+++.+.+++++.+++++++.+++... .
T Consensus 269 ~~aa~~lG~a~~al~~a~~ya~~R~~~~fG~-------~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~---~ 338 (422)
T 2jbr_A 269 GFSAVSLGIAERMIEAFKEKQRNRVRAYTGA-------NVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGL---N 338 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCBCTTTCC-------BCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c
Confidence 9999999999999999999999998 9998 99999999999999999999999999999988764322 1
Q ss_pred CCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchh-HHHHHHHHHHHHH
Q 008966 311 NDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMK 386 (547)
Q Consensus 311 ~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~-~vl~~~ia~~ll~ 386 (547)
+.. ...+....++++|.++++.+.++++.|+|+|||.||+.+++++++|||++...+++|++ ++++..+++.+|+
T Consensus 339 g~~-~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~e~~~~~ia~~~lg 414 (422)
T 2jbr_A 339 HQY-PNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDAHMTGAHAYTDYDVCAQILGRELMG 414 (422)
T ss_dssp TCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTCHHHHHHHHHHHHTSSTTTCHHHHHHHHHHHHTT
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhhhcCCcHHHHHHHHHHHhcCCccchhHHHHHHHHHHhC
Confidence 211 12345677899999999999999999999999999999999999999999999999999 9999999999885
No 38
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=7.9e-34 Score=302.61 Aligned_cols=275 Identities=12% Similarity=0.002 Sum_probs=210.9
Q ss_pred HHhcCCC--HHHHHhHhHHHhccceeeEEeccCCCCC--------CCC-CCCceEEEEeCCCCeEEEecCCCCceeEccc
Q 008966 55 AIKGQGT--DEQHQKWLPLAYKMEIIGCYAQTELGHG--------SNV-QGLETTATFDPQTDEFVIHSPTLTSSKWWPG 123 (547)
Q Consensus 55 ~i~~~Gt--~~q~~~~l~~i~~g~~~g~~a~TE~~~G--------sd~-~~l~TtA~~d~~~~~filntp~~~G~K~~i~ 123 (547)
.+..+|| ++||++|||++.+|++++|+|+|||+.| ||+ ..++ +|+++ +|+|+|| |+|+|+|
T Consensus 119 ~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~--gdg~vln-----G~K~~iT 190 (490)
T 1u8v_A 119 IDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKR--EDGIVVR-----GAKAHQT 190 (490)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEEC--SSEEEEE-----EEECSCT
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEE--CCEEEEE-----eEEEEee
Confidence 3457899 9999999999999999999999999864 775 4454 78877 8999999 9999999
Q ss_pred CCCCCCcEEEEEEEEccC-CCCcceEEEEEeecCCCCCCCCCCeEEc---cCCCC----------cccccc-CC-cccee
Q 008966 124 GLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIG---DIGMK----------FGNGAY-NT-MDNGV 187 (547)
Q Consensus 124 ~l~~~A~~~~V~A~~~~~-~~~~g~~~flV~~r~~~~~~~~pGv~i~---~~~~~----------~G~~~~-~~-~~~~~ 187 (547)
| +..||+++|+|++..+ +...++++|+|| .+.|||++. +.+.+ +| + +. .+.+.
T Consensus 191 ~-a~~Ad~~iV~art~~~~~~~~~~s~flVp-------~d~pGv~v~~~r~~~~~~~~~~~~d~~lg---~~r~~~~~~~ 259 (490)
T 1u8v_A 191 G-SINSHEHIIMPTIAMTEADKDYAVSFACP-------SDADGLFMIYGRQSCDTRKMEEGADIDLG---NKQFGGQEAL 259 (490)
T ss_dssp T-CTTCSEEEECCSSCCCGGGGGGCEEEEEE-------TTCTTEEEEECCCTTGGGGGSTTCCGGGS---SSSCCCCCEE
T ss_pred C-CcccCEEEEEEecCCCCCCCCeEEEEEEE-------CCCCCEEEEecccccccccccccccCCcc---ccccCCceEE
Confidence 9 8999999999997532 222457899999 889999994 44443 55 5 53 56789
Q ss_pred EEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCc
Q 008966 188 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 267 (547)
Q Consensus 188 v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e 267 (547)
|.||||+||.+++|+. +..|.++. .....+...|+.+++.+++.+..++.++.+.... |
T Consensus 260 v~FddV~VP~e~vl~~----g~~~~g~~------~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~~---~-------- 318 (490)
T 1u8v_A 260 VVFDNVFIPNDRIFLC----QEYDFAGM------MVERFAGYHRQSYGGCKVGVGDVVIGAAALAADY---N-------- 318 (490)
T ss_dssp EEEEEEEEEGGGEEEE----SCGGGHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--------
T ss_pred EEECceEeCHHHccCC----CChhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--------
Confidence 9999999999999831 02333332 3344555677766666666666666555443321 2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 008966 268 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 347 (547)
Q Consensus 268 ~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg 347 (547)
+|.++|.+|++|+++.+.+++++++++++++..+. .+..........++++|.++++.+.++++.|+|++||
T Consensus 319 -gi~~~q~vq~~laem~~~leaar~l~~~aa~~~d~-------~~~g~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg 390 (490)
T 1u8v_A 319 -GAQKASHVKDKLIEMTHLNETLYCCGIACSAEGYP-------TAAGNYQIDLLLANVCKQNITRFPYEIVRLAEDIAGG 390 (490)
T ss_dssp -TCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE-------CTTSCEECCHHHHHHHHHHHTTHHHHHHHHHHHHHCT
T ss_pred -CchhcHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-------cccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 47899999999999999999999999999775421 0111111235568999999999999999999999999
Q ss_pred ccccccCChhhhcccc-cccccccchhHHHHHH
Q 008966 348 HGYLCSSGLPELFAVY-VPACTYEGDNIVLLLQ 379 (547)
Q Consensus 348 ~G~~~~~~l~~~~rd~-~~~~~~eG~~~vl~~~ 379 (547)
.|++ .|+++.|||. +++.++|.....++..
T Consensus 391 ~g~~--~p~er~~rd~~~~~~~~~~~~~~l~~~ 421 (490)
T 1u8v_A 391 LMVT--MPSEADFKSETVVGRDGETIGDFCNKF 421 (490)
T ss_dssp HHHH--CCCHHHHTCCCBCSTTSCBHHHHHHHH
T ss_pred chhc--ChHHHHHhCchhccccchhHHHHHHHH
Confidence 9998 8999999998 8888888776665543
No 39
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=100.00 E-value=2.1e-33 Score=298.93 Aligned_cols=272 Identities=10% Similarity=0.066 Sum_probs=214.4
Q ss_pred CHHHHHhHhHHHhccceeeEEeccCCCCC--------CCCCCCceEEE-EeCCCCeEEEecCCCCceeEcccCCCCCCcE
Q 008966 61 TDEQHQKWLPLAYKMEIIGCYAQTELGHG--------SNVQGLETTAT-FDPQTDEFVIHSPTLTSSKWWPGGLGKVSTH 131 (547)
Q Consensus 61 t~~q~~~~l~~i~~g~~~g~~a~TE~~~G--------sd~~~l~TtA~-~d~~~~~filntp~~~G~K~~i~~l~~~A~~ 131 (547)
.++||++|||++.+|++++|+|+|||+.| ||+. +.|+++ +| +|+|+|| |+|+|+|| ..||+
T Consensus 122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~--gdg~Vln-----G~K~~iT~--~~Ad~ 191 (481)
T 2yyk_A 122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQT--EKGIVVR-----GARMTATF--PLADE 191 (481)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEEC--SSEEEEE-----EEEEEEEC--CCSSE
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEE--CCEEEEE-----eEEEEecc--ccccE
Confidence 57899999999999999999999999976 6774 777775 45 8999999 99999998 88999
Q ss_pred EEEEEEEccC-CCCcceEEEEEeecCCCCCCCCCCeEEc--cCCCC--------ccccccCC-ccceeEEecceecCccc
Q 008966 132 AVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIG--DIGMK--------FGNGAYNT-MDNGVLRFEHVRIPRNQ 199 (547)
Q Consensus 132 ~~V~A~~~~~-~~~~g~~~flV~~r~~~~~~~~pGv~i~--~~~~~--------~G~~~~~~-~~~~~v~f~~v~VP~~~ 199 (547)
++|+|+++.+ +...++++|+|| .+.|||++. +.+.+ +| .+. .+++.|.||||+||.+|
T Consensus 192 ~iV~art~~~~~~~~~~s~flVp-------~dtpGv~v~~r~~~~~~~s~~d~~lg---~r~~~~~~~v~FddV~VP~e~ 261 (481)
T 2yyk_A 192 VLIFPSILLQAGSEKYALAFALP-------TSTPGLHFVCREALVGGDSPFDHPLS---SRVEEMDCLVIFDDVLVPWER 261 (481)
T ss_dssp EEECCCSCCCTTCGGGCEEEEEE-------TTCTTEEEEECCCCCCCSCTTTCTTT---TTCCCCEEEEEEEEEEEEGGG
T ss_pred EEEEEecCCCCCCCCeEEEEEEE-------CCCCCEEEEeccccccCCcccccccc---ccCCCCeEEEEEccEEECHHH
Confidence 9999998642 223468899999 889999994 33332 45 554 67889999999999999
Q ss_pred cccccccccCCcceeccCchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHH
Q 008966 200 MLMRVSQVTREGKYVQSNVPRQLL--YGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQ 277 (547)
Q Consensus 200 lL~~~~~v~~~G~~~~~~~~~~~~--~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q 277 (547)
+|+. + ..|.+.. .. ...+..+|+..++..+|.+..++.++.+++.. | +|.++|.+|
T Consensus 262 vl~~-G---~~~~g~~------~~~~~~~l~~~r~~~~~~~~g~a~~~lg~a~~~~~~---~---------gi~~~q~vq 319 (481)
T 2yyk_A 262 VFIL-G---NVELCNN------AYGATGALNHMAHQVVALKTAKTEAFLGVAALMAEG---I---------GADVYGHVQ 319 (481)
T ss_dssp EEEE-S---CHHHHHH------HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T---------TGGGSHHHH
T ss_pred ccCC-C---CccHHHH------HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh---c---------ChhhhHHHH
Confidence 9841 0 1232221 22 45667899999999999999999999888763 2 488999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChh
Q 008966 278 NRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 357 (547)
Q Consensus 278 ~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~ 357 (547)
++|+++.+.+++++++++++++..+. .+..........++++|.++++.+.++++.|+|++||.|++ .+++
T Consensus 320 ~~laem~~~leaar~l~~~aa~~~d~-------~~~G~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~e 390 (481)
T 2yyk_A 320 EKIAEIIVYLEAMRAFWTRAEEEAKE-------NAYGLLVPDRGALDGARNLYPRLYPRIREILEQIGASGLIT--LPSE 390 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEE-------CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSC--CCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc-------cccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc--CccH
Confidence 99999999999999999999875421 01111112355689999999999999999999999998887 7888
Q ss_pred hhcccccccc------cccchhHHHHHHHHHHH
Q 008966 358 ELFAVYVPAC------TYEGDNIVLLLQVARFL 384 (547)
Q Consensus 358 ~~~rd~~~~~------~~eG~~~vl~~~ia~~l 384 (547)
+.| |..... ...|.+++.+..++|.+
T Consensus 391 ~~~-~~~i~~~l~~~l~~~g~~~~~r~~i~rl~ 422 (481)
T 2yyk_A 391 KDF-KGPLGPFLEKFLQGAALEAKERVALFRLA 422 (481)
T ss_dssp HHH-HSTTHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred HHh-ChhhhHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 888 774322 33599999999999854
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=99.96 E-value=1.3e-28 Score=261.64 Aligned_cols=278 Identities=12% Similarity=0.000 Sum_probs=190.6
Q ss_pred CCCH--HHHHhHhHHHhccceeeEEeccCCCC--------CCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCC
Q 008966 59 QGTD--EQHQKWLPLAYKMEIIGCYAQTELGH--------GSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKV 128 (547)
Q Consensus 59 ~Gt~--~q~~~~l~~i~~g~~~g~~a~TE~~~--------Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~ 128 (547)
+|++ +|+++|||++.+|++++|+|+|||+. |||+ .+.|++ .+ +|+|+|| |+|+|+|| +..
T Consensus 127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~~-~~--gdg~Vln-----G~K~~iT~-a~~ 196 (515)
T 3hwc_A 127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIVE-KT--DDGIIVN-----GVKAVGTG-IAF 196 (515)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEEE-EC--SSEEEEE-----EEEEEEES-GGG
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEEE-EE--CCEEEEE-----EEEEEECC-ccc
Confidence 5654 68899999999999999999999986 5888 565543 33 7899999 99999999 999
Q ss_pred CcEEEEEEEEccCCCCcceEEEEEeecCCCCCCCCCCeEEccCCCCccccccC----------CccceeEEecceecCcc
Q 008966 129 STHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN----------TMDNGVLRFEHVRIPRN 198 (547)
Q Consensus 129 A~~~~V~A~~~~~~~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~~~----------~~~~~~v~f~~v~VP~~ 198 (547)
||+++|+|++..+.+.+++++|+|| .+.|||++.+.+.++| .+ +.+.+.|.||||+||.+
T Consensus 197 Ad~~lV~a~t~~~~~~~~~s~FlVp-------~d~pGv~v~~~~~~~G---~~~~d~~ls~~~~~~~a~v~FddV~VP~e 266 (515)
T 3hwc_A 197 GDYMHIGCLYRPGIPGEQVIFAAIP-------TNTPGVTVFCRESTVK---NDPAEHPLASQGDELDSTTVFDNVFIPWE 266 (515)
T ss_dssp CSEEEECCCCCTTCCGGGCEEEEEE-------TTCTTEEEEECCCCCC---SCTTTCTTTTSCCCCEEEEEEEEEEEEGG
T ss_pred cCEEEEEEEecCCCCCCeEEEEEEE-------CCCCCeEEeecccccC---ccccccccccccCCceEEEEECceEECHH
Confidence 9999999987332222238999999 8899999987777665 32 23478999999999999
Q ss_pred ccccccccccCCcceeccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHH
Q 008966 199 QMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQN 278 (547)
Q Consensus 199 ~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~ 278 (547)
++|+. + +.|.++. ++...+...+....+..++.+..++..+.+++. +| +|.+||.+|+
T Consensus 267 ~vl~~-G---e~g~g~~------~~~~~~~~~~r~~~~~~~~~a~~~lG~A~~~~e---~~---------gI~~fQ~Vq~ 324 (515)
T 3hwc_A 267 QVFHI-G---NPEHAKL------YPQRIFDWVHYHILIRQVLRAELIVGLAILITE---HI---------GTSKLPTVSA 324 (515)
T ss_dssp GEEEE-S---CTTGGGT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---------TCTTSHHHHH
T ss_pred HccCC-C---CccHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hc---------CCcccHHHHH
Confidence 99931 0 2344433 222222222211112334444444444444432 12 4789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCC---
Q 008966 279 RLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG--- 355 (547)
Q Consensus 279 ~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~--- 355 (547)
+|++|.+.+++++++++++++..+ ..+..........++++|.++++.+.++++.|+|++||.+++..+.
T Consensus 325 kLAem~~~lEaaR~l~~~Aa~~~d-------~~~~G~~~p~~~~as~AK~~ase~~~rv~~~a~qi~GG~~i~~Ps~~d~ 397 (515)
T 3hwc_A 325 RVAKLVAFHLAMQAHLIASEETGF-------HTKGGRYKPNPLIYDFGRAHFLQNQMSVMYELLDLAGRSSLMIPSEGQW 397 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCE-------ECTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCHHHh
Confidence 999999999999999998876432 1111111123456899999999999999999999999999976432
Q ss_pred ----hhhhcccccccccccchhHHHHHHHHHHHH
Q 008966 356 ----LPELFAVYVPACTYEGDNIVLLLQVARFLM 385 (547)
Q Consensus 356 ----l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 385 (547)
+..++.............-+-...++..+.
T Consensus 398 ~~pe~~~~l~ky~~g~~~~a~~R~kl~rl~~d~~ 431 (515)
T 3hwc_A 398 DDSQSGQWFVKLNNGPKGNPRERVQIGRVIRDLY 431 (515)
T ss_dssp HCTTTHHHHHHHTCCTTCCTHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Confidence 222222222222234455555556665554
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.89 E-value=2.1e-21 Score=206.73 Aligned_cols=247 Identities=11% Similarity=-0.028 Sum_probs=177.2
Q ss_pred HHHHhHhHHHhccceeeEEeccCCCCCCC-----CCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEE
Q 008966 63 EQHQKWLPLAYKMEIIGCYAQTELGHGSN-----VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYAR 137 (547)
Q Consensus 63 ~q~~~~l~~i~~g~~~g~~a~TE~~~Gsd-----~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~ 137 (547)
+...+|+..+..+.+..+.++|+|-..-. ...+-...+. ..++||||| |.|.|+|| +..||+++|+++
T Consensus 134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve-~~~dGiVVn-----GaK~~~T~-a~~Ad~i~V~a~ 206 (517)
T 4g5e_A 134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIE-KNDKGIVVS-----GVKAIGTG-VAFADWIHIGVF 206 (517)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEE-ECSSEEEEE-----EEEEEEES-GGGCSEEEECCC
T ss_pred HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEE-EcCCeEEEe-----eEehhhcC-ccccCEEEEEee
Confidence 44578999999999999999999953211 1111122222 226899999 99999999 999999999999
Q ss_pred EccCCCCcceEEEEEeecCCCCCCCCCCeEEccCCCCccccc------cCCc-cceeEEecceecCccccccccccccCC
Q 008966 138 LITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA------YNTM-DNGVLRFEHVRIPRNQMLMRVSQVTRE 210 (547)
Q Consensus 138 ~~~~~~~~g~~~flV~~r~~~~~~~~pGv~i~~~~~~~G~~~------~~~~-~~~~v~f~~v~VP~~~lL~~~~~v~~~ 210 (547)
+.++.+.++...|+|| .+.|||++.......+... .++. ..+.|.||||+||.++++.- ++.
T Consensus 207 t~~~~~~d~~~~F~VP-------~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~----Ge~ 275 (517)
T 4g5e_A 207 FRPGIPGDQIIFAATP-------VNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHL----GNP 275 (517)
T ss_dssp CCTTCCGGGCEEEEEE-------TTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEE----SCT
T ss_pred cCCCCCccceEEEEEe-------cCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHcccc----CCh
Confidence 8776566778899999 8899999844433333000 2222 23789999999999998731 023
Q ss_pred cceeccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHH
Q 008966 211 GKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAF 290 (547)
Q Consensus 211 G~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~ 290 (547)
+.... .....+...|...++..++.+..++..+..++.. +| |.++|.+|++|++|+...+++
T Consensus 276 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~ae~---~G---------i~~fq~Vq~kLaEm~~~~E~~ 337 (517)
T 4g5e_A 276 EHAKL------YPQRVFDWLHYHALIRQSVRAELMAGLAILITEH---IG---------TNKIPAVQTRVAKLIGFHQAM 337 (517)
T ss_dssp THHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT---------CTTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC---------CcccHHHHHHHHHHHHHHHHH
Confidence 33322 4445566777777777778888788888777743 23 678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Q 008966 291 RFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 352 (547)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~ 352 (547)
+++++.+... ....+......-...++++|.++++...+++++++|++||.|++.
T Consensus 338 ral~~aaa~~-------a~~~~~G~~~P~~~~a~~aK~~a~~~~~rv~~eaiqi~GG~g~~~ 392 (517)
T 4g5e_A 338 LAHIVASEEL-------GFHTPGGAYKPNILIYDFGRALYLENFSQMIYELVDLSGRSALIF 392 (517)
T ss_dssp HHHHHHHHHT-------CEECTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCC
T ss_pred HHHHHHHHHh-------cccCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC
Confidence 9888766431 111111111112456789999999999999999999999999984
No 42
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=85.23 E-value=6.8 Score=42.08 Aligned_cols=67 Identities=6% Similarity=-0.056 Sum_probs=54.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 008966 269 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLC 345 (547)
Q Consensus 269 ~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~ 345 (547)
.|.+-|.+..+|+++...+|++.+.+.++...+... + .+.......++++||.+...++-..+.++.
T Consensus 485 ~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (597)
T 3owa_A 485 ALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTT------G----LEKNKQKVLYTEVFCQEAFNEIEAHAKETL 551 (597)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------C----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------C----ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999999999999988886655321 1 123345577899999999999999888887
No 43
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=41.74 E-value=3e+02 Score=29.16 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=59.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 008966 269 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 348 (547)
Q Consensus 269 ~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~ 348 (547)
.+.+.|.+..||++++..+|++..+..++.+.+.. +. +.......+++.+|.+...++-..+.++..+.
T Consensus 509 ~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~-------g~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 577 (607)
T 2uxw_A 509 GIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSE-------GH----PTAQHEKMLCDTWCIEAAARIREGMAALQSDP 577 (607)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TC----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67788999999999999999988887777554421 11 11222356688888887777777777733220
Q ss_pred cccccCChhhhcccccccccccchhHHHHHHHHHHHHHH
Q 008966 349 GYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 387 (547)
Q Consensus 349 G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 387 (547)
. ..+++-++.+||+.++..
T Consensus 578 ~--------------------~~~~~~~~~~ia~~~~~~ 596 (607)
T 2uxw_A 578 W--------------------QQELYRNFKSISKALVER 596 (607)
T ss_dssp T--------------------HHHHHHHHHHHHHHHHHH
T ss_pred C--------------------CCChHHHHHHHHHHHHHc
Confidence 0 124566778889988874
No 44
>3nrh_A Uncharacterized protein BF1032; predominantly alpha-helical protein, structural genomics, PS protein structure initiative; 1.80A {Bacteroides fragilis}
Probab=38.49 E-value=20 Score=31.87 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhh---hhhHHhcCCCCHHHHHHHHHH
Q 008966 458 FAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKH---LGDFVSTGCITAKQASLANEQ 534 (547)
Q Consensus 458 ~n~~~~~~~~la~a~~~~~~~~~f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~---~~~fl~~~~ls~~~~~~l~~~ 534 (547)
+.+-.++.+.+|+-||. |++...+.....-+.++++.|-.||+.....-. ........++|.++.+.++..
T Consensus 9 ~~~~~~eFvtvA~eyC~------lvE~~~~~~~~~fi~~~~klLp~Ly~k~s~Lp~~e~~~~~~~e~~Vte~d~~~lr~~ 82 (182)
T 3nrh_A 9 FDKNVIEFVTVAAEFCA------FLERAESMKRSTFVDTTLKILPLLYLKASMLPKCEMIGDESPETYVTEEIYEVLRIN 82 (182)
T ss_dssp GCHHHHHHHHHHHHHHH------HHHTGGGSCHHHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCCCCCHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHH------HHhccccCCHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccCHHHHHHHHHH
Confidence 34445788999999997 345554311233466788889999988776542 134456788999999999999
Q ss_pred HHHHHHhh
Q 008966 535 LRSLYSQV 542 (547)
Q Consensus 535 i~~l~~~L 542 (547)
+..++...
T Consensus 83 la~lLg~~ 90 (182)
T 3nrh_A 83 LASILAEK 90 (182)
T ss_dssp HHHHHGGG
T ss_pred HHHHcCCC
Confidence 99998764
No 45
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=23.49 E-value=61 Score=26.73 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=32.6
Q ss_pred HHHHhhhhhHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 008966 508 HLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 545 (547)
Q Consensus 508 ~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l~~~Lrp~ 545 (547)
..|++-..||-+.|-|+....+.+...+.+...+-.|+
T Consensus 35 ~~i~~~cPWFp~eGtLd~~~W~kVG~~L~~~~~~~~~~ 72 (124)
T 2lpy_A 35 DFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPE 72 (124)
T ss_dssp HHHHHHCTTCTTTCCCCSHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHhCCCcCCCCccCHHHHHHHHHHHHHHHHHhCCC
Confidence 45888999999999999999999999998887765443
No 46
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=22.12 E-value=87 Score=24.42 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=31.5
Q ss_pred HHHHhhhhhHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 008966 508 HLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 545 (547)
Q Consensus 508 ~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l~~~Lrp~ 545 (547)
..|++...||-+.|-|+.+..+.+.+.+.+..++-.|+
T Consensus 36 ~fi~~~cPWFp~eGtl~l~~W~kVG~~L~~~~~~~g~~ 73 (94)
T 1bax_A 36 DFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPE 73 (94)
T ss_pred HHHHHhCCCcCcCCcccHHHHHHHHHHHHHHHHHcCCC
Confidence 34677788999999999999999999999887665443
Done!