Your job contains 1 sequence.
>008969
MSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKI
DEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICD
KQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCSSSQQPFDGQRAEKIVNDVVETR
PKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSSVDGGVGTLAGVGGAALLSKKEAD
PSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVL
ASRVAAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSE
DKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCLGTKQDEEKSSD
GNSVQATLCAGGQQFNSETEHGESLSDSGDDKIKNSNPVLDLAKDDLLAQLKWKSSRKRR
RGGGSSVHRLHCSDPEGKHTRAVVGSGFCERFLFPASIKVDDNCKYMRGSLFKSSVVSPL
TSLVMSR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008969
(547 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2026874 - symbol:AT1G68580 species:3702 "Arabi... 1054 1.5e-106 1
TAIR|locus:2162117 - symbol:AT5G55600 species:3702 "Arabi... 571 2.3e-55 1
TAIR|locus:2203018 - symbol:AT1G09320 species:3702 "Arabi... 184 4.8e-11 1
TAIR|locus:2130878 - symbol:G2484-1 "G2484-1 protein" spe... 197 8.6e-11 2
TAIR|locus:2200146 - symbol:DUF2 "DOMAIN OF UNKNOWN FUNCT... 145 1.2e-06 1
TAIR|locus:2197985 - symbol:AT1G26540 species:3702 "Arabi... 139 6.6e-06 1
TAIR|locus:2202295 - symbol:AT1G06340 species:3702 "Arabi... 75 0.00057 2
>TAIR|locus:2026874 [details] [associations]
symbol:AT1G68580 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR001025 Pfam:PF01426
PROSITE:PS51038 SMART:SM00439 INTERPRO:IPR008395 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009506 GO:GO:0003677 Pfam:PF05641
InterPro:IPR014002 SMART:SM00743 EMBL:AY128327 EMBL:BT008396
IPI:IPI00516313 RefSeq:NP_177025.2 UniGene:At.47248
ProteinModelPortal:Q8L7Q0 PaxDb:Q8L7Q0 PRIDE:Q8L7Q0
EnsemblPlants:AT1G68580.2 GeneID:843187 KEGG:ath:AT1G68580
TAIR:At1g68580 eggNOG:NOG246853 HOGENOM:HOG000242436
InParanoid:Q8L7Q0 OMA:DLYEDSK PhylomeDB:Q8L7Q0
ProtClustDB:CLSN2680593 ArrayExpress:Q8L7Q0 Genevestigator:Q8L7Q0
Uniprot:Q8L7Q0
Length = 648
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 222/459 (48%), Positives = 289/459 (62%)
Query: 3 RKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDE 62
RK+RKHYQS+ RNGV++SV+DFVYVLAE++KRL+AY+ED+YEDS+G KMVVVRWFHK +E
Sbjct: 135 RKRRKHYQSYLRNGVRISVNDFVYVLAEQHKRLVAYIEDLYEDSKGKKMVVVRWFHKTEE 194
Query: 63 VGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQ 122
VG L + NDREIFFSL QD+SIECID LATVLSPQH+EKF+ + Q F C K
Sbjct: 195 VGSVLSDDDNDREIFFSLNRQDISIECIDYLATVLSPQHYEKFLKVPMHVQTVAFFCQKL 254
Query: 123 FENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCSSSQQPFDGQRAEKIVNDVVETRPK 182
+ +D +KP+DIT ++GYWRQE++R+L + K+ +Q P + + V R +
Sbjct: 255 YGDDGLKPYDITQLEGYWRQEMLRYL-NVSILKSFEGAQAPGTDPGLKAPLVGCVGIRSR 313
Query: 183 KRLRQSKDADV-CDYTNRKEPMDAACMDLKISTKSSXXXXXXXXXXXXXXXXXSKKEADP 241
KR R S + Y D+K KSS K + D
Sbjct: 314 KRRRPSPVGTLNVSYAG----------DMKGDCKSSPDSVLAVTDASIF-----KGDEDG 358
Query: 242 SSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLA 301
SS ++K GS +EVLS+DSG+RGCW++A V+KKHKDKVKV+Y D+QDA DE LEEW+L
Sbjct: 359 SSHHIKKGSLIEVLSEDSGIRGCWFKALVLKKHKDKVKVQYQDIQDADDESKKLEEWILT 418
Query: 302 SRVAAPDQLG-LRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSE 360
SRVAA D LG LR+ GR++VRP + K I VG VD WW DGWWEGIV+Q+ SE
Sbjct: 419 SRVAAGDHLGDLRIKGRKVVRPMLKPSKENDVCVIGVGMPVDVWWCDGWWEGIVVQEVSE 478
Query: 361 DKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCLGTKQDEEKSSD 420
+K VY PGEK+ S F R DLR S+EW + W+ I+ RSD+VSS+L L K++ E D
Sbjct: 479 EKFEVYLPGEKKMSAFHRNDLRQSREWLDDEWLNIRSRSDIVSSVLS-LTKKKEMEVKHD 537
Query: 421 GNSVQATLCAGGQQFNSETEHGESLSDSGDDKIKNSNPV 459
S +C G +E + SL + K P+
Sbjct: 538 EKSSDVGVCNGRMSPKTEAKRTISLPVATTKKSLPKRPI 576
>TAIR|locus:2162117 [details] [associations]
symbol:AT5G55600 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=RCA]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
InterPro:IPR001025 Pfam:PF01426 PROSITE:PS51038 SMART:SM00439
INTERPRO:IPR008395 EMBL:CP002688 GO:GO:0003677 Pfam:PF05641
InterPro:IPR014002 SMART:SM00743 UniGene:At.29433 UniGene:At.6552
EMBL:AF462815 EMBL:BT001005 IPI:IPI00518132 RefSeq:NP_001119443.1
RefSeq:NP_001190547.1 RefSeq:NP_200371.2 ProteinModelPortal:Q8W109
PRIDE:Q8W109 EnsemblPlants:AT5G55600.1 EnsemblPlants:AT5G55600.2
EnsemblPlants:AT5G55600.3 GeneID:835654 KEGG:ath:AT5G55600
TAIR:At5g55600 InParanoid:Q8W109 OMA:VPKQELA PhylomeDB:Q8W109
ProtClustDB:CLSN2690242 ArrayExpress:Q8W109 Genevestigator:Q8W109
Uniprot:Q8W109
Length = 663
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 144/418 (34%), Positives = 225/418 (53%)
Query: 1 MSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKI 60
M K+ KHY SFCRNG + V FV+VL++ R +AYLEDMYED RG K V VRWFH
Sbjct: 151 MCGKQLKHYPSFCRNGTTIGVQSFVFVLSKGEDRYVAYLEDMYEDKRGLKKVKVRWFHYT 210
Query: 61 DEV-GIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQ---LQP 116
EV G N N +E+F + Q +S EC+DG ATVL+ +H+E+ + A++P +
Sbjct: 211 KEVKGAVALKNPNPKEVFITPHSQVISAECVDGPATVLTREHYEECV--ASFPNSLLARV 268
Query: 117 FICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTS-PKNCSSS-QQPFDGQRAEKIVN 174
+C +Q N VKPFD++ ++GY Q I+ L + + P +C+ + ++ + E ++
Sbjct: 269 HMCYRQLRNSKVKPFDLSKLRGYLDQPIMSCLSSMEAGPVDCAMNIEEDEEWSEGENVMV 328
Query: 175 DVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSSXXXXXXXXXXXXXXXXX 234
E KKR R D + Y +++C LK++
Sbjct: 329 GA-ERSMKKRARIMSDHLLTTY-------ESSCKRLKLNASGKRFPSP------------ 368
Query: 235 SKKEADPS-SQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVN 293
+ + P + +K + +E L QDSG+RGCW+R +V+ + +VK++Y+D++D D
Sbjct: 369 TNVQKHPCYNGVVKTDAKIEFLCQDSGIRGCWFRCTVLDVSRKQVKLQYDDIEDE-DGYG 427
Query: 294 LLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGR-----VSWAIDVGTIVDAWWHDG 348
LEEWV A + A PD+LG+R+S R +RP+P K + A+D D WW +G
Sbjct: 428 NLEEWVPAFKSAMPDKLGIRLSNRPTIRPAPRDVKTAYFDLTIGEAVDAWWN-DGWW-EG 485
Query: 349 WWEGIVIQK-DSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSI 405
I K D+ED L +Y PGE R D+R S++W G+ W+ I + ++++ +
Sbjct: 486 --VVIATGKPDTED-LKIYIPGENLCLTVLRKDIRISRDWVGDSWVDIDPKPEILAIV 540
>TAIR|locus:2203018 [details] [associations]
symbol:AT1G09320 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0009688 "abscisic acid biosynthetic process" evidence=RCA]
INTERPRO:IPR008395 EMBL:CP002684 GenomeReviews:CT485782_GR
Pfam:PF05641 InterPro:IPR014002 SMART:SM00743 EMBL:BT022112
IPI:IPI00538316 RefSeq:NP_172403.3 UniGene:At.42230
ProteinModelPortal:Q500V5 SMR:Q500V5 EnsemblPlants:AT1G09320.1
GeneID:837453 KEGG:ath:AT1G09320 TAIR:At1g09320 eggNOG:NOG262633
HOGENOM:HOG000136721 InParanoid:Q500V5 OMA:AFYNDGW PhylomeDB:Q500V5
ProtClustDB:CLSN2918468 Genevestigator:Q500V5 Uniprot:Q500V5
Length = 517
Score = 184 (69.8 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 65/213 (30%), Positives = 91/213 (42%)
Query: 245 YLKVGSHVEVLSQDSGMRGCWYRASVI----KKHKDKVK--VRYNDVQDAADEVNLLEEW 298
YLK GS VE+ S + G RG WY VI KD VK V Y + + L+E
Sbjct: 38 YLKPGSAVEISSDEIGFRGSWYMGKVITIPSSSDKDSVKCQVEYTTLFFDKEGTKPLKEV 97
Query: 299 VLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKD 358
V S++ P P E K + I VG VDA+++DGWWEG V +
Sbjct: 98 VDMSQLRPP------------APPMSEIEKKK---KIVVGEEVDAFYNDGWWEGDVTEVL 142
Query: 359 SEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVS--SILCCLGTKQDEE 416
+ K V+F K++ F + +LR +EW W E ++ S L +DEE
Sbjct: 143 DDGKFSVFFRSSKEQIRFRKDELRFHREWVDGAWKPPLEETEEEEDESEEDKLDDSEDEE 202
Query: 417 KSSDGNSVQATLCAGGQQFNSETEHGESLSDSG 449
++ T Q F+S T S + G
Sbjct: 203 DILARVDLETTRAIAKQMFSSGTVVEVSSDEEG 235
Score = 115 (45.5 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 320 VRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRG 379
+RP P + + +A VG ++A+++DGWW G+VI + +YF ++K F R
Sbjct: 279 IRPPPPRDED-IDFA--VGDKINAFYNDGWWVGVVIDGMKHGTVGIYFRQSQEKMRFGRQ 335
Query: 380 DLRHSQEWFGNGW 392
LR ++W W
Sbjct: 336 GLRLHKDWVDGTW 348
Score = 93 (37.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 242 SSQYLKVGSHVEVLSQDSGMRGCWYRASVIKK-HKDKVKVRYNDVQDAADEVNLLEE 297
+ Q G+ VEV S + G +GCW+ A V++ +DK V Y D+++ D + L+E
Sbjct: 217 AKQMFSSGTVVEVSSDEEGFQGCWFAAKVVEPVGEDKFLVEYRDLREK-DGIEPLKE 272
Score = 87 (35.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 341 VDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWM 393
V+A ++DGWW G++ + ++ V F ++ F LR QEW W+
Sbjct: 457 VNALYNDGWWVGVIRKVLAKSSYLVLFKNTQELLKFHHSQLRLHQEWIDGKWI 509
Score = 81 (33.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 244 QYLKVGSHVEVLSQDSGMRGCWYRASVIK-KHKDKVKVRYNDVQDAADEVNLLEEWVLAS 302
Q +G+ +EV ++ G W+ A +I+ + KDK V Y++++ A D L E V S
Sbjct: 378 QAFSIGTPIEVSPEEEGFEDSWFLAKLIEYRGKDKCLVEYDNLK-AEDGKEPLREEVNVS 436
Query: 303 RV 304
R+
Sbjct: 437 RI 438
>TAIR|locus:2130878 [details] [associations]
symbol:G2484-1 "G2484-1 protein" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000226 "microtubule cytoskeleton organization"
evidence=RCA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA]
INTERPRO:IPR008395 GO:GO:0009506 EMBL:CP002687 Pfam:PF05641
InterPro:IPR014002 SMART:SM00743 IPI:IPI00518294 RefSeq:NP_193464.5
UniGene:At.23026 PRIDE:F4JP43 EnsemblPlants:AT4G17330.1
GeneID:827445 KEGG:ath:AT4G17330 OMA:VAWFSAK Uniprot:F4JP43
Length = 2037
Score = 197 (74.4 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 52/169 (30%), Positives = 84/169 (49%)
Query: 246 LKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYND--VQDAADEVNLLEEWVLASR 303
+K GS+VEV ++ G+R WY A+V+ DK V ++D V+ D+ L+EWV
Sbjct: 1573 IKEGSNVEVFKEEPGLRTAWYSANVLSLEDDKAYVLFSDLSVEQGTDK---LKEWVALK- 1628
Query: 304 VAAPDQLGLRVSGRRIVRPSP-ESHKGRVSWAID-----VGTIVDAWWHDGWWEGIVIQK 357
DQ ++ R V P E + R A+ +G VD+W HD W EG++ +K
Sbjct: 1629 -GEGDQAP-KIRPARSVTALPYEGTRKRRRAALGDHIWKIGDRVDSWVHDSWLEGVITEK 1686
Query: 358 DSEDK--LHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSS 404
+ +D+ + V+FP E++ +LR S W W+ + +SS
Sbjct: 1687 NKKDENTVTVHFPAEEETLTIKAWNLRPSLVWKDGKWIECSSSGETISS 1735
Score = 43 (20.2 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 30 EENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREI 76
EE + + +ED D GN ++ +++ LP ND +
Sbjct: 238 EEKANVESRMEDDCSD--GNVQTIITCSGELNNQSTLLPETSNDENV 282
>TAIR|locus:2200146 [details] [associations]
symbol:DUF2 "DOMAIN OF UNKNOWN FUNCTION 724 2"
species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009944
"polarity specification of adaxial/abaxial axis" evidence=RCA]
[GO:0010014 "meristem initiation" evidence=RCA] [GO:0010075
"regulation of meristem growth" evidence=RCA] INTERPRO:IPR008395
EMBL:CP002684 Pfam:PF05641 InterPro:IPR014002 SMART:SM00743
IPI:IPI00536326 RefSeq:NP_172609.1 UniGene:At.51568
ProteinModelPortal:F4I8W1 PRIDE:F4I8W1 EnsemblPlants:AT1G11420.1
GeneID:837684 KEGG:ath:AT1G11420 OMA:MESCAKD InterPro:IPR007930
Pfam:PF05266 Uniprot:F4I8W1
Length = 604
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 45/167 (26%), Positives = 76/167 (45%)
Query: 245 YLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRV 304
+++ VEV S++ ++G +YRA + + K +N ++ + L E LA
Sbjct: 6 FIRKDDKVEVFSEEEELKGSYYRAIL---EDNPTKSGHNKLK--VRYLTQLNEHRLAPLT 60
Query: 305 AAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLH 364
DQ R +RP P ++ G +VDA+ DGWW G+V++ ++K
Sbjct: 61 EFVDQ--------RFIRPVPSEDVNDGVVFVE-GLMVDAYLKDGWWTGVVVKTMEDEKFL 111
Query: 365 VYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCLGT 411
VYF F + LR +W G W+ + ++V S+ C GT
Sbjct: 112 VYFDCPPDIIQFEKKKLRVHLDWTGFKWIR-PDNKELVKSVFSC-GT 156
>TAIR|locus:2197985 [details] [associations]
symbol:AT1G26540 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005773 "vacuole" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA]
INTERPRO:IPR008395 EMBL:CP002684 EMBL:AC013427 GO:GO:0005773
Pfam:PF05641 InterPro:IPR014002 SMART:SM00743 InterPro:IPR007930
Pfam:PF05266 HOGENOM:HOG000114080 EMBL:AK117551 IPI:IPI00540262
PIR:D86392 RefSeq:NP_173976.1 UniGene:At.41229
ProteinModelPortal:Q9FZD9 PRIDE:Q9FZD9 ProMEX:Q9FZD9
EnsemblPlants:AT1G26540.1 GeneID:839194 KEGG:ath:AT1G26540
TAIR:At1g26540 InParanoid:Q9FZD9 OMA:WINIPTV PhylomeDB:Q9FZD9
ProtClustDB:CLSN2679655 Genevestigator:Q9FZD9 Uniprot:Q9FZD9
Length = 695
Score = 139 (54.0 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 40/142 (28%), Positives = 65/142 (45%)
Query: 252 VEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLG 311
VEV S++ G G W+RA V+++ N + ++ + +L ++P L
Sbjct: 14 VEVSSEEEGFEGAWFRA-VLEE---------NPGNSSRRKLRVRYSTLLDMDGSSP--LI 61
Query: 312 LRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEK 371
+ +R +RP P + ++ G +VDA DGWW G+V++K +D VYF
Sbjct: 62 EHIE-QRFIRPVPPEENQQKDVVLEEGLLVDADHKDGWWTGVVVKKMEDDNYLVYFDLPP 120
Query: 372 QKSIFSRGDLRHSQEWFGNGWM 393
F R LR W G W+
Sbjct: 121 DIIQFERKQLRTHLIWTGGTWI 142
>TAIR|locus:2202295 [details] [associations]
symbol:AT1G06340 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
INTERPRO:IPR008395 EMBL:CP002684 GenomeReviews:CT485782_GR
EMBL:AC068143 Pfam:PF05641 InterPro:IPR014002 SMART:SM00743
EMBL:BT030646 IPI:IPI00527169 PIR:B86199 RefSeq:NP_172123.1
UniGene:At.49437 ProteinModelPortal:Q9LMI5 SMR:Q9LMI5 DNASU:837145
EnsemblPlants:AT1G06340.1 GeneID:837145 KEGG:ath:AT1G06340
TAIR:At1g06340 eggNOG:NOG305593 HOGENOM:HOG000153048
InParanoid:Q9LMI5 OMA:VEVCSKE PhylomeDB:Q9LMI5
ProtClustDB:CLSN2914137 Genevestigator:Q9LMI5 Uniprot:Q9LMI5
Length = 134
Score = 75 (31.5 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 335 IDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWM 393
I G VDA+ DGWW G V + VYF ++ + LR EW W+
Sbjct: 75 IRCGDKVDAFDKDGWWVGEVTAV-RRNIYSVYFSTTDEELEYPLYSLRKHHEWVNGSWV 132
Score = 70 (29.7 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 244 QYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDK--VKVRYNDVQDAADEVNLLEEWVLA 301
+++K G VEV S++ G G ++ A+V+ K + K++Y ++ D+ L E + A
Sbjct: 2 EFVK-GDQVEVCSKEDGFLGSYFGATVVSKTPEGSYYKIKYKNLVSDTDQSKRLVEVISA 60
Query: 302 SRV 304
+
Sbjct: 61 DEL 63
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 547 504 0.00085 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 626 (67 KB)
Total size of DFA: 339 KB (2170 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.64u 0.09s 39.73t Elapsed: 00:00:03
Total cpu time: 39.64u 0.09s 39.73t Elapsed: 00:00:03
Start: Sat May 11 13:36:51 2013 End: Sat May 11 13:36:54 2013