BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008969
(547 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 8 HYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHK-IDEVGIF 66
HY +G S+ DF Y+ EE + + + + ++ + G V+WF++ D +
Sbjct: 569 HYSQAKVDGHTFSLGDFAYIKGEEEETHVGQIVEFFKTTDGESYFRVQWFYRATDTIMER 628
Query: 67 LPHNFNDREIFFSLCLQDLSIECIDGLATVL 97
N + R +F+S + D ++C+ TVL
Sbjct: 629 QATNHDKRRLFYSTVMNDNPVDCLISKVTVL 659
>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1
Length = 1658
Score = 36.2 bits (82), Expect = 0.71, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 3 RKKRKHYQSFCRNGVKVSVHDFVYVLA--EENKRLIAYLEDMYEDSRGNKMVVVRWFHKI 60
R +++ Y++ R ++V D L+ ++ I +E M+E + GNK+V V WF+
Sbjct: 1496 RARKQFYKTIKRGKETITVGDSAVFLSTGRPDRPYIGRIESMWETTTGNKVVRVAWFYHP 1555
Query: 61 DE 62
+E
Sbjct: 1556 EE 1557
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1
Length = 1689
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 21 VHDFVYV-LAEEN-KRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFF 78
V D+VYV AE N + I +E ++EDS G K + WF++ +E F ++E+F
Sbjct: 960 VGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFK 1019
Query: 79 SLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDV 128
S + + I G V+ + + K +C + F ++DV
Sbjct: 1020 SDYYNKVPVSKILGKCVVMFVKEYFK-------------LCPENFRDEDV 1056
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1
Length = 1633
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 21 VHDFVYV-LAEEN-KRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFF 78
V D+VYV AE N + I +E ++EDS G K + WF++ +E F ++E+F
Sbjct: 958 VGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFK 1017
Query: 79 SLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDV 128
S + + I G V+ + + K +C + F ++DV
Sbjct: 1018 SDYYNKVPVSKILGKCVVMFVKEYFK-------------LCPENFRDEDV 1054
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
Length = 1634
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 21 VHDFVYV-LAEEN-KRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFF 78
V D+VYV AE N + I +E ++EDS G K + WF++ +E F ++E+F
Sbjct: 960 VGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFK 1019
Query: 79 SLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQF 123
S + + I G V+ + + K E + F+C+ ++
Sbjct: 1020 SDYYNKVPVSKILGKCVVMFVKEYFKLCPE-NFRDEDVFVCESRY 1063
>sp|B3PBB9|DAPE_CELJU Succinyl-diaminopimelate desuccinylase OS=Cellvibrio japonicus
(strain Ueda107) GN=dapE PE=3 SV=2
Length = 382
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 370 EKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCLGTKQ--DEEKSSDGNSVQAT 427
E+ ++I + +L++ EW +G F+ R D+V++++ + T D E S+ G +
Sbjct: 276 ERTQAILDKHELKYELEWILSGQPFLTPRGDLVNAVVDAINTATGLDAELSTSGGTSDGR 335
Query: 428 LCA 430
A
Sbjct: 336 FIA 338
>sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1
Length = 912
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 4 KKRKHYQSFCRNGVKVSVHDFVYVLAEENKR-LIAYLEDMYEDSRGNKMVVVRWFHKIDE 62
K R HY+S + V + D VYV A EN+ I + + +E + RWF + ++
Sbjct: 171 KARCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAED 230
Query: 63 VGI-------FLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQL 114
I H + R +F S D ++CI ++ H + M+ QL
Sbjct: 231 TVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIV---HVDPNMDPKAKAQL 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,732,846
Number of Sequences: 539616
Number of extensions: 9112541
Number of successful extensions: 20682
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 20673
Number of HSP's gapped (non-prelim): 14
length of query: 547
length of database: 191,569,459
effective HSP length: 123
effective length of query: 424
effective length of database: 125,196,691
effective search space: 53083396984
effective search space used: 53083396984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)