BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008970
         (547 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WSR|A Chain A, Monotim Mutant Rmm0-1, Monomeric Form
          Length = 242

 Score = 29.3 bits (64), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 93  SWKSRGPKDLLCRICLISAISSALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALASSA 152
           +WK  G +  L    LI   +S    +D  CVV   FV+    +  L    F++A  ++ 
Sbjct: 10  NWKCNGSQQSLSE--LIDLFNSTSINHDVQCVVAPRFVMIAMTKERLSHPKFVIAAQNAG 67

Query: 153 N 153
           N
Sbjct: 68  N 68


>pdb|2O98|A Chain A, Structure Of The 14-3-3  H+-Atpase Plant Complex
 pdb|2O98|B Chain B, Structure Of The 14-3-3  H+-Atpase Plant Complex
          Length = 242

 Score = 29.3 bits (64), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 255 SLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSG 289
           S++      GN  H  ++R   S +ENE++++  G
Sbjct: 71  SIEQKEESRGNEEHVNSIREYRSKIENELSKICDG 105


>pdb|3M50|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
           EPIBESTAT
 pdb|3M51|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
           PYRROLIDO
          Length = 240

 Score = 28.9 bits (63), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 255 SLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSG 289
           S++      GN  H  ++R   S +ENE++++  G
Sbjct: 71  SIEQKEESRGNEEHVNSIREYRSKIENELSKICDG 105


>pdb|1O9C|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3
           Regulatory Complex
 pdb|1O9D|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3
           Regulatory Complex
 pdb|1O9E|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3
           Regulatory Complex
 pdb|1O9F|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3
           Regulatory Complex
 pdb|3E6Y|A Chain A, Structure Of 14-3-3 In Complex With The
           Differentiation-Inducing Agent Cotylenin A
 pdb|3E6Y|B Chain B, Structure Of 14-3-3 In Complex With The
           Differentiation-Inducing Agent Cotylenin A
          Length = 260

 Score = 28.9 bits (63), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 255 SLQNSPNVNGNGSHAETLRNRTSLVENEINRVSSG 289
           S++      GN  H  ++R   S +ENE++++  G
Sbjct: 71  SIEQKEESRGNEEHVNSIREYRSKIENELSKICDG 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,895,289
Number of Sequences: 62578
Number of extensions: 491836
Number of successful extensions: 979
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 6
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)