Query 008970
Match_columns 547
No_of_seqs 206 out of 1533
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 15:52:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008970.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008970hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fy8a2 d.286.1.1 (A:245-336) 19.9 8.3 0.00061 28.9 -0.6 40 288-327 28-74 (92)
2 d1vcta2 d.286.1.1 (A:108-201) 17.4 10 0.00073 28.6 -0.7 40 288-327 24-70 (94)
3 d2axti1 f.23.37.1 (I:1-35) Pho 5.7 1.5E+02 0.011 17.6 1.9 17 105-121 12-28 (35)
4 d2diia1 a.240.1.1 (A:8-55) TFI 4.0 1.6E+02 0.012 18.8 1.1 15 46-60 29-43 (48)
5 d1kqfb2 f.23.22.1 (B:246-290) 2.6 7E+02 0.051 15.5 4.3 26 186-211 14-39 (45)
6 d1fx8a_ f.19.1.1 (A:) Glycerol 2.1 1.5E+03 0.11 18.3 6.9 24 48-71 72-95 (254)
7 d1qled_ f.23.8.1 (D:) Bacteria 2.1 6.2E+02 0.045 15.6 2.4 22 523-544 16-37 (43)
8 d1m56d_ f.23.8.1 (D:) Bacteria 2.1 6.4E+02 0.046 15.4 2.4 22 523-544 15-36 (42)
9 d2vv5a3 f.34.1.1 (A:27-112) Me 2.0 1E+03 0.073 15.8 9.4 37 114-150 40-76 (86)
10 d2yvxa3 f.57.1.1 (A:276-448) M 1.9 8.1E+02 0.059 19.4 3.8 20 492-514 50-69 (173)
No 1
>d2fy8a2 d.286.1.1 (A:245-336) Potassium channel-related protein MthK, C-terminal domain {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=19.92 E-value=8.3 Score=28.94 Aligned_cols=40 Identities=10% Similarity=-0.093 Sum_probs=28.2
Q ss_pred CCcc--hhhhhhccccc-ccccCCcccccCC----CCCcccccchhh
Q 008970 288 SGTF--ESARITNESKE-VSTDGGSQRREET----VPSRGIGSVITL 327 (547)
Q Consensus 288 ~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~l~~gd~l 327 (547)
+|++ +|+++++++++ +..+++++|+++. ..+..+++||++
T Consensus 28 ~S~lvGktl~el~l~~~~~~~ViaI~r~g~~i~~p~~~~~l~~gD~L 74 (92)
T d2fy8a2 28 GSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDII 74 (92)
T ss_dssp SSTTTTCBHHHHCHHHHHSCEEEEEEETTEEEESCCTTCBCCTTCEE
T ss_pred CCccCCCCHHHcCCchhcCeEEEEEEeCCceecCCCCccEeCCCCEE
Confidence 4455 89999999876 6677889887654 244456777755
No 2
>d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=17.44 E-value=10 Score=28.55 Aligned_cols=40 Identities=8% Similarity=-0.153 Sum_probs=27.9
Q ss_pred CCcc--hhhhhhccccc-ccccCCcccccCC----CCCcccccchhh
Q 008970 288 SGTF--ESARITNESKE-VSTDGGSQRREET----VPSRGIGSVITL 327 (547)
Q Consensus 288 ~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~l~~gd~l 327 (547)
+|++ +++++++++++ +..+++++|+++. ..+..+++||++
T Consensus 24 ~S~l~Gktl~e~~~~~~~~v~ViaI~R~g~~i~~p~~~~~l~~gD~l 70 (94)
T d1vcta2 24 ESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFGPNENFKIRAGDVL 70 (94)
T ss_dssp TCTTTTCBHHHHCHHHHHSCEEEEEEETTEEEESCCTTCBCCTTCEE
T ss_pred CCcccccCHHHhccchhcCeEEEEEEECCeeecCCCCCCEECCCCEE
Confidence 4444 89999999876 5667888886654 134457888865
No 3
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.72 E-value=1.5e+02 Score=17.60 Aligned_cols=17 Identities=6% Similarity=0.135 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhchhhH
Q 008970 105 RICLISAISSALFTNDT 121 (547)
Q Consensus 105 ~i~~~~~~lS~flsN~~ 121 (547)
.+++++.+.=.|+|||+
T Consensus 12 V~fFv~lFiFGFLSnDP 28 (35)
T d2axti1 12 VTFFVLLFVFGFLSGDP 28 (35)
T ss_dssp HHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhhccCCC
Confidence 34445555667888886
No 4
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.95 E-value=1.6e+02 Score=18.84 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.2
Q ss_pred HHHHccCChHHHHhc
Q 008970 46 MVIFQVITPDQAYAA 60 (547)
Q Consensus 46 l~l~gv~~~~~a~~~ 60 (547)
++++|+++++|.++.
T Consensus 29 LVvs~VitseEFWan 43 (48)
T d2diia1 29 LVVSQVISAEEFWAN 43 (48)
T ss_dssp HHTTTSSCHHHHHHH
T ss_pred HHHhccccHHHHHHh
Confidence 678999999997753
No 5
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=2.55 E-value=7e+02 Score=15.49 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCC
Q 008970 186 PAMFVGVAVNALILLTMYWKLLNSHK 211 (547)
Q Consensus 186 p~~iv~~~v~~~~~~~~~~~lLp~~~ 211 (547)
|+..+++..+.+..++-|-+.-|++.
T Consensus 14 pl~~~~~~~~~~~~~fHYv~vGPn~v 39 (45)
T d1kqfb2 14 PLAAAGFIATFAGLIFHYIGIGPNKE 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCBCS
T ss_pred HHHHHHHHHHHHHHHHhhheeCCCcc
Confidence 67777666655544444445556554
No 6
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=2.12 E-value=1.5e+03 Score=18.34 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=10.9
Q ss_pred HHccCChHHHHhcCChhHHHHHHH
Q 008970 48 IFQVITPDQAYAAIDLPILGLLFG 71 (547)
Q Consensus 48 l~gv~~~~~a~~~~~~~~i~~l~~ 71 (547)
+.|.+++.++.-.+--+.+.-+.|
T Consensus 72 i~g~~~~~~~~~Yi~aQ~lGa~~g 95 (254)
T d1fx8a_ 72 LFACFDKRKVIPFIVSQVAGAFCA 95 (254)
T ss_dssp HHSCCCGGGHHHHHHHHHHHHHHH
T ss_pred HcCCCcHHHhHHHHHHHHHHHHHH
Confidence 444555555444444444443333
No 7
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=2.08 E-value=6.2e+02 Score=15.60 Aligned_cols=22 Identities=14% Similarity=0.079 Sum_probs=12.9
Q ss_pred ehhhhHhhhhHHHHHHHHHHhh
Q 008970 523 SFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 523 ~f~df~k~G~p~~li~~iv~~~ 544 (547)
+|-.|+|+-.=.+++++++.++
T Consensus 16 TF~gFi~~~t~~~i~~i~~lif 37 (43)
T d1qled_ 16 TFAGFIKGATWVSILSIAVLVF 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777766555555544443
No 8
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.05 E-value=6.4e+02 Score=15.45 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=12.4
Q ss_pred ehhhhHhhhhHHHHHHHHHHhh
Q 008970 523 SFWNHLKFGVPSTLIVTAIGLP 544 (547)
Q Consensus 523 ~f~df~k~G~p~~li~~iv~~~ 544 (547)
+|-.|+|+-.=.++.++++.++
T Consensus 15 TF~gFik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 15 TFAGFVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777765555555444443
No 9
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=1.99 E-value=1e+03 Score=15.83 Aligned_cols=37 Identities=3% Similarity=0.076 Sum_probs=23.5
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 008970 114 SALFTNDTSCVVLTEFVLKIARQHNLPPHPFLLALAS 150 (547)
Q Consensus 114 S~flsN~~~v~i~~Pi~~~ia~~~~~~p~~~l~~~a~ 150 (547)
..++++.....+..-..+-..+..|+|..+++.....
T Consensus 40 ~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~ 76 (86)
T d2vv5a3 40 ADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4455555555555555556677899998887654443
No 10
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=1.91 E-value=8.1e+02 Score=19.44 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=13.5
Q ss_pred HhhcChhhhhhhhhHHHHhcccc
Q 008970 492 TVAGNLSLVGSAANLIVCEQAHR 514 (547)
Q Consensus 492 ~~gg~~TpiGs~aNliv~~~~~~ 514 (547)
+.|||. |+|+..++.+.++.
T Consensus 50 ~~gGN~---G~Qs~ti~iR~La~ 69 (173)
T d2yvxa3 50 GTGGNT---GNQSATLIIRALAT 69 (173)
T ss_dssp HHHHHH---HHHHHHHHHHHHHT
T ss_pred cCCchH---HHHHHHHHHHHHhc
Confidence 355554 78888887776654
Done!