Query 008973
Match_columns 547
No_of_seqs 307 out of 3783
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 15:56:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 6.4E-32 2.2E-36 283.1 40.2 432 3-494 65-539 (594)
2 3ogk_B Coronatine-insensitive 100.0 2.8E-30 9.4E-35 270.5 33.2 429 3-491 72-543 (592)
3 2p1m_B Transport inhibitor res 100.0 2.4E-30 8.2E-35 271.1 31.3 409 3-473 104-542 (594)
4 1z7x_W Ribonuclease inhibitor; 100.0 2E-29 6.7E-34 255.6 33.5 415 3-491 2-460 (461)
5 3ogk_B Coronatine-insensitive 100.0 7.6E-30 2.6E-34 267.1 29.9 417 22-492 65-519 (592)
6 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-26 5.1E-31 234.4 36.4 389 3-467 27-460 (461)
7 3t6q_A CD180 antigen; protein- 99.9 2.7E-26 9.4E-31 240.7 -4.8 145 4-163 33-190 (606)
8 2ca6_A RAN GTPase-activating p 99.9 5.1E-22 1.7E-26 195.9 24.7 262 216-487 29-331 (386)
9 2z81_A CD282 antigen, TOLL-lik 99.9 3.7E-24 1.3E-28 221.8 7.7 388 3-473 25-484 (549)
10 3t6q_A CD180 antigen; protein- 99.9 1.1E-25 3.8E-30 236.1 -4.7 82 3-98 80-162 (606)
11 2ca6_A RAN GTPase-activating p 99.9 2E-21 6.9E-26 191.6 25.9 241 239-492 26-309 (386)
12 3rgz_A Protein brassinosteroid 99.9 3.2E-25 1.1E-29 237.9 -2.7 407 3-473 125-549 (768)
13 3rgz_A Protein brassinosteroid 99.9 4.5E-26 1.5E-30 244.5 -10.3 415 3-491 99-543 (768)
14 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-23 8.4E-28 215.6 9.0 406 3-473 49-508 (549)
15 4fmz_A Internalin; leucine ric 99.9 6.7E-22 2.3E-26 192.2 15.1 282 124-473 63-344 (347)
16 3vq2_A TLR4, TOLL-like recepto 99.9 2.3E-24 7.7E-29 226.1 -2.7 314 3-357 79-434 (606)
17 3vq2_A TLR4, TOLL-like recepto 99.9 3.1E-24 1.1E-28 225.1 -2.4 133 3-163 31-164 (606)
18 1o6v_A Internalin A; bacterial 99.9 6.7E-22 2.3E-26 200.0 14.4 278 124-473 109-386 (466)
19 2z63_A TOLL-like receptor 4, v 99.9 2.3E-24 8E-29 224.5 -5.4 133 3-163 27-160 (570)
20 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-22 5.5E-27 207.9 7.9 400 3-473 20-479 (520)
21 2ast_B S-phase kinase-associat 99.9 6.2E-20 2.1E-24 177.5 25.3 287 16-350 11-299 (336)
22 1ziw_A TOLL-like receptor 3; i 99.8 6.8E-23 2.3E-27 217.8 -0.0 205 245-473 381-595 (680)
23 4eco_A Uncharacterized protein 99.8 2E-23 7E-28 218.8 -5.0 300 123-473 269-598 (636)
24 2ast_B S-phase kinase-associat 99.8 2.3E-19 7.8E-24 173.5 21.2 251 220-492 48-302 (336)
25 1ziw_A TOLL-like receptor 3; i 99.8 1.5E-22 5E-27 215.3 -1.5 315 4-357 25-363 (680)
26 3v47_A TOLL-like receptor 5B a 99.8 8.1E-22 2.8E-26 199.2 3.9 183 244-446 211-406 (455)
27 4fmz_A Internalin; leucine ric 99.8 1.4E-20 4.9E-25 182.8 12.3 281 125-473 42-322 (347)
28 3j0a_A TOLL-like receptor 5; m 99.8 4.8E-23 1.6E-27 223.3 -6.7 412 3-473 23-491 (844)
29 1o6v_A Internalin A; bacterial 99.8 6.3E-20 2.2E-24 185.5 16.3 342 3-446 45-386 (466)
30 4ecn_A Leucine-rich repeat pro 99.8 2.2E-22 7.6E-27 214.5 -2.9 301 123-473 511-838 (876)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.3E-20 4.6E-25 195.2 9.5 402 3-473 51-508 (562)
32 3v47_A TOLL-like receptor 5B a 99.8 4.4E-22 1.5E-26 201.2 -2.6 351 60-473 29-406 (455)
33 2z7x_B TOLL-like receptor 1, v 99.8 8.4E-21 2.9E-25 195.1 6.4 210 218-455 275-488 (520)
34 3j0a_A TOLL-like receptor 5; m 99.8 1.6E-22 5.4E-27 219.3 -11.5 404 3-473 47-515 (844)
35 2z63_A TOLL-like receptor 4, v 99.8 4.5E-21 1.5E-25 199.6 -2.0 412 3-473 75-529 (570)
36 2id5_A Lingo-1, leucine rich r 99.8 5E-21 1.7E-25 194.5 -2.1 300 127-473 32-331 (477)
37 3o6n_A APL1; leucine-rich repe 99.8 4.3E-19 1.5E-23 175.2 7.4 157 271-458 205-361 (390)
38 3bz5_A Internalin-J, INLJ; leu 99.8 5.1E-19 1.8E-23 177.3 7.3 117 218-356 147-263 (457)
39 3o6n_A APL1; leucine-rich repe 99.8 1.1E-18 3.9E-23 172.2 9.2 224 218-486 140-364 (390)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-19 3.8E-24 188.3 1.6 191 235-453 322-515 (562)
41 4eco_A Uncharacterized protein 99.7 2.6E-20 8.7E-25 195.3 -4.7 303 125-473 247-577 (636)
42 2id5_A Lingo-1, leucine rich r 99.7 1.5E-19 5.1E-24 183.6 -0.4 290 123-456 52-341 (477)
43 3oja_B Anopheles plasmodium-re 99.7 3.7E-18 1.3E-22 177.8 8.1 37 28-71 49-85 (597)
44 4ecn_A Leucine-rich repeat pro 99.7 4.2E-19 1.4E-23 189.4 0.8 300 125-473 489-817 (876)
45 3oja_B Anopheles plasmodium-re 99.7 4.1E-18 1.4E-22 177.5 6.9 316 60-457 50-366 (597)
46 4g8a_A TOLL-like receptor 4; l 99.7 1.4E-19 4.9E-24 190.9 -5.0 160 294-473 418-578 (635)
47 3goz_A Leucine-rich repeat-con 99.7 3.1E-16 1.1E-20 152.8 18.2 146 296-450 138-298 (362)
48 2z80_A TOLL-like receptor 2, v 99.7 8.9E-18 3.1E-22 163.3 3.5 66 399-473 247-312 (353)
49 1xku_A Decorin; proteoglycan, 99.7 6.3E-18 2.1E-22 162.8 2.2 199 126-357 51-250 (330)
50 3goz_A Leucine-rich repeat-con 99.7 7.5E-16 2.6E-20 150.1 16.8 267 133-421 4-303 (362)
51 1jl5_A Outer protein YOPM; leu 99.7 5.7E-17 1.9E-21 162.4 8.1 354 2-473 9-368 (454)
52 3bz5_A Internalin-J, INLJ; leu 99.6 6.7E-17 2.3E-21 162.0 4.0 279 123-473 60-350 (457)
53 2z80_A TOLL-like receptor 2, v 99.6 1.4E-16 4.6E-21 154.9 4.2 282 125-447 29-313 (353)
54 1xku_A Decorin; proteoglycan, 99.6 5.6E-17 1.9E-21 156.1 1.1 294 128-472 32-329 (330)
55 2ft3_A Biglycan; proteoglycan, 99.6 8E-18 2.7E-22 162.1 -5.3 197 126-356 53-250 (332)
56 1jl5_A Outer protein YOPM; leu 99.6 1.2E-15 4E-20 152.8 7.1 330 28-473 9-348 (454)
57 3un9_A NLR family member X1; l 99.6 7.2E-14 2.5E-18 135.6 17.1 192 271-473 72-281 (372)
58 2ft3_A Biglycan; proteoglycan, 99.5 4.1E-17 1.4E-21 157.2 -6.7 294 128-473 34-331 (332)
59 3o53_A Protein LRIM1, AGAP0063 99.5 3.9E-16 1.3E-20 149.1 -2.0 153 295-472 119-272 (317)
60 3un9_A NLR family member X1; l 99.5 2.2E-13 7.5E-18 132.2 16.3 178 295-483 71-261 (372)
61 4g8a_A TOLL-like receptor 4; l 99.5 9.1E-16 3.1E-20 161.7 -1.6 409 3-450 99-582 (635)
62 3zyi_A Leucine-rich repeat-con 99.5 5.5E-15 1.9E-19 148.6 4.0 226 127-385 75-300 (452)
63 3zyj_A Leucine-rich repeat-con 99.5 5.5E-15 1.9E-19 148.1 3.5 155 218-385 135-289 (440)
64 3zyj_A Leucine-rich repeat-con 99.5 4.2E-15 1.4E-19 148.9 1.6 184 217-415 110-293 (440)
65 3zyi_A Leucine-rich repeat-con 99.5 6.5E-15 2.2E-19 148.1 2.9 228 152-413 75-302 (452)
66 1ozn_A Reticulon 4 receptor; N 99.5 2E-15 6.7E-20 142.0 -1.6 161 292-473 76-236 (285)
67 2z66_A Variable lymphocyte rec 99.5 1.2E-16 4.2E-21 152.0 -10.1 160 293-473 98-259 (306)
68 1ozn_A Reticulon 4 receptor; N 99.5 2.5E-14 8.6E-19 134.4 5.4 108 270-385 128-235 (285)
69 1wwl_A Monocyte differentiatio 99.5 7.8E-15 2.7E-19 139.7 1.4 113 124-255 118-238 (312)
70 3g06_A SSPH2 (leucine-rich rep 99.5 1.7E-13 5.8E-18 141.5 11.4 244 127-456 61-304 (622)
71 3o53_A Protein LRIM1, AGAP0063 99.5 1.1E-14 3.7E-19 139.0 2.3 238 126-446 33-273 (317)
72 3oja_A Leucine-rich immune mol 99.4 7.6E-14 2.6E-18 141.1 6.6 149 151-334 33-182 (487)
73 1ogq_A PGIP-2, polygalacturona 99.4 4.8E-16 1.6E-20 148.1 -9.1 251 127-448 50-304 (313)
74 3g06_A SSPH2 (leucine-rich rep 99.4 1.3E-13 4.5E-18 142.3 8.1 255 128-473 41-295 (622)
75 2z66_A Variable lymphocyte rec 99.4 1.2E-14 4.2E-19 138.1 0.0 109 270-385 149-258 (306)
76 1ogq_A PGIP-2, polygalacturona 99.4 1.3E-15 4.4E-20 145.1 -7.9 178 270-473 124-302 (313)
77 3e4g_A ATP synthase subunit S, 99.4 4.1E-13 1.4E-17 112.9 7.3 93 321-418 61-156 (176)
78 1h6u_A Internalin H; cell adhe 99.4 2.5E-13 8.7E-18 128.8 6.8 103 218-334 40-142 (308)
79 3e4g_A ATP synthase subunit S, 99.4 6.8E-13 2.3E-17 111.6 7.8 108 375-491 61-172 (176)
80 4fcg_A Uncharacterized protein 99.4 1.4E-13 4.9E-18 131.7 3.6 206 124-356 101-310 (328)
81 3oja_A Leucine-rich immune mol 99.4 3.3E-14 1.1E-18 143.7 -1.0 237 125-408 32-269 (487)
82 4fcg_A Uncharacterized protein 99.4 1.4E-13 4.7E-18 131.8 3.2 221 126-384 80-310 (328)
83 1wwl_A Monocyte differentiatio 99.4 1.2E-13 4.1E-18 131.5 2.4 33 375-411 274-306 (312)
84 4glp_A Monocyte differentiatio 99.4 7.1E-14 2.4E-18 133.0 0.7 237 126-416 63-308 (310)
85 1h6u_A Internalin H; cell adhe 99.4 7.6E-13 2.6E-17 125.5 7.7 100 269-384 127-226 (308)
86 2o6q_A Variable lymphocyte rec 99.3 1.1E-13 3.6E-18 128.9 -1.0 179 272-473 38-216 (270)
87 4glp_A Monocyte differentiatio 99.3 6.8E-13 2.3E-17 126.1 4.4 229 218-473 63-305 (310)
88 2z62_A TOLL-like receptor 4, v 99.3 4.1E-14 1.4E-18 132.3 -5.3 110 219-334 28-137 (276)
89 2o6q_A Variable lymphocyte rec 99.3 9.7E-13 3.3E-17 122.4 2.6 62 293-357 130-191 (270)
90 3rfs_A Internalin B, repeat mo 99.3 3.8E-13 1.3E-17 125.2 -0.9 170 270-471 62-231 (272)
91 2z62_A TOLL-like receptor 4, v 99.3 3.9E-13 1.3E-17 125.6 -0.9 201 127-384 28-233 (276)
92 1h6t_A Internalin B; cell adhe 99.2 6.6E-12 2.3E-16 117.9 5.2 100 244-357 45-144 (291)
93 4ezg_A Putative uncharacterize 99.2 5.6E-12 1.9E-16 111.1 4.4 58 294-356 64-121 (197)
94 3rfs_A Internalin B, repeat mo 99.2 2.2E-12 7.6E-17 120.0 1.5 176 271-473 41-216 (272)
95 4ezg_A Putative uncharacterize 99.2 1.2E-11 3.9E-16 109.0 4.3 149 244-411 43-191 (197)
96 1h6t_A Internalin B; cell adhe 99.1 1.9E-11 6.4E-16 114.8 4.8 60 269-334 88-147 (291)
97 1p9a_G Platelet glycoprotein I 99.1 7.1E-12 2.4E-16 117.5 1.7 200 124-386 7-206 (290)
98 2ra8_A Uncharacterized protein 99.1 1.5E-10 5.1E-15 111.2 10.9 75 346-423 251-328 (362)
99 2xwt_C Thyrotropin receptor; s 99.1 2.3E-12 8E-17 117.5 -1.9 58 127-193 31-88 (239)
100 1m9s_A Internalin B; cell inva 99.1 1.8E-11 6.1E-16 126.2 4.3 168 243-446 41-208 (605)
101 2xwt_C Thyrotropin receptor; s 99.1 1.2E-12 4.2E-17 119.3 -4.3 85 152-255 31-115 (239)
102 1p9a_G Platelet glycoprotein I 99.1 1.6E-11 5.6E-16 115.1 1.8 138 269-418 75-212 (290)
103 2ra8_A Uncharacterized protein 99.1 3.3E-10 1.1E-14 108.8 10.4 154 293-458 169-329 (362)
104 1io0_A Tropomodulin; LRR prote 99.1 3.2E-09 1.1E-13 92.0 14.3 121 318-446 33-162 (185)
105 1io0_A Tropomodulin; LRR prote 99.1 1.7E-09 6E-14 93.6 12.7 121 345-473 34-162 (185)
106 1m9s_A Internalin B; cell inva 99.0 6E-11 2.1E-15 122.3 3.6 168 217-412 41-208 (605)
107 3m19_A Variable lymphocyte rec 99.0 1.8E-11 6.1E-16 112.4 -0.5 155 297-473 36-190 (251)
108 3m19_A Variable lymphocyte rec 99.0 2.4E-11 8.1E-16 111.6 -0.0 156 271-446 35-190 (251)
109 1xeu_A Internalin C; cellular 98.9 4.8E-10 1.6E-14 103.4 3.7 36 433-473 148-183 (263)
110 3sb4_A Hypothetical leucine ri 98.9 4.3E-10 1.5E-14 107.7 2.8 205 126-356 100-306 (329)
111 2je0_A Acidic leucine-rich nuc 98.9 1.1E-09 3.6E-14 91.6 3.5 128 219-355 17-148 (149)
112 2je0_A Acidic leucine-rich nuc 98.8 1.2E-09 3.9E-14 91.3 3.5 15 319-333 40-54 (149)
113 1xeu_A Internalin C; cellular 98.8 8.7E-10 3E-14 101.6 2.6 125 292-446 59-183 (263)
114 1dce_A Protein (RAB geranylger 98.8 2E-10 6.7E-15 117.8 -4.6 37 124-162 346-382 (567)
115 2ell_A Acidic leucine-rich nuc 98.8 6.2E-10 2.1E-14 95.1 -1.1 130 219-357 24-157 (168)
116 2xot_A Amphoterin-induced prot 98.7 9.7E-10 3.3E-14 106.6 -0.3 108 245-357 39-146 (361)
117 4ay9_X Follicle-stimulating ho 98.7 6.8E-11 2.3E-15 114.3 -8.9 206 126-358 29-234 (350)
118 2o6s_A Variable lymphocyte rec 98.7 5E-10 1.7E-14 99.5 -2.7 148 296-472 28-175 (208)
119 2ell_A Acidic leucine-rich nuc 98.7 1.2E-09 4.1E-14 93.3 -0.5 58 295-357 23-81 (168)
120 2xot_A Amphoterin-induced prot 98.7 8.8E-10 3E-14 106.9 -1.6 134 218-357 38-173 (361)
121 2v9t_B SLIT homolog 2 protein 98.7 2.7E-09 9.2E-14 95.5 0.4 60 375-446 104-163 (220)
122 4ay9_X Follicle-stimulating ho 98.6 2E-10 7E-15 110.9 -8.4 226 218-471 29-255 (350)
123 3sb4_A Hypothetical leucine ri 98.6 2E-09 6.8E-14 103.0 -1.5 36 218-255 24-59 (329)
124 1pgv_A TMD-1, tropomodulin TMD 98.6 3.6E-07 1.2E-11 78.3 12.5 121 345-472 39-167 (197)
125 3e6j_A Variable lymphocyte rec 98.6 5.1E-09 1.7E-13 94.3 1.1 131 296-446 40-170 (229)
126 2v9t_B SLIT homolog 2 protein 98.6 2.9E-09 1E-13 95.2 -0.5 62 399-473 102-163 (220)
127 1dce_A Protein (RAB geranylger 98.6 6.8E-09 2.3E-13 106.4 1.8 34 3-39 348-381 (567)
128 3e6j_A Variable lymphocyte rec 98.6 5.8E-09 2E-13 94.0 1.0 132 320-473 39-170 (229)
129 3cvr_A Invasion plasmid antige 98.6 4.4E-08 1.5E-12 99.9 7.5 167 126-343 79-252 (571)
130 3cvr_A Invasion plasmid antige 98.6 4.3E-09 1.5E-13 107.3 -0.4 17 433-450 228-244 (571)
131 2o6s_A Variable lymphocyte rec 98.6 9E-09 3.1E-13 91.3 1.2 112 292-412 48-159 (208)
132 2v70_A SLIT-2, SLIT homolog 2 98.6 5.3E-09 1.8E-13 93.5 -0.9 39 294-333 103-141 (220)
133 1a9n_A U2A', U2A'; complex (nu 98.5 5.6E-08 1.9E-12 83.5 4.6 56 297-357 43-98 (176)
134 1a9n_A U2A', U2A'; complex (nu 98.5 1.9E-08 6.5E-13 86.5 1.5 84 270-357 63-150 (176)
135 2v70_A SLIT-2, SLIT homolog 2 98.5 1.2E-08 4.2E-13 91.1 0.3 111 293-412 54-164 (220)
136 1pgv_A TMD-1, tropomodulin TMD 98.5 2.6E-06 8.8E-11 73.0 13.2 121 319-446 39-168 (197)
137 1ds9_A Outer arm dynein; leuci 98.5 9.9E-09 3.4E-13 90.2 -1.9 37 317-357 44-80 (198)
138 4fdw_A Leucine rich hypothetic 98.4 4.5E-09 1.5E-13 102.8 -5.6 214 220-472 158-380 (401)
139 4fdw_A Leucine rich hypothetic 98.4 4E-08 1.4E-12 96.1 -0.4 61 291-357 295-355 (401)
140 1ds9_A Outer arm dynein; leuci 98.4 4.3E-08 1.5E-12 86.0 -0.4 107 291-411 43-150 (198)
141 4fs7_A Uncharacterized protein 98.3 7.8E-09 2.7E-13 101.5 -6.4 163 271-467 230-393 (394)
142 2wfh_A SLIT homolog 2 protein 98.2 3.4E-07 1.2E-11 79.8 2.8 39 294-333 76-114 (193)
143 1w8a_A SLIT protein; signaling 98.2 1.6E-07 5.6E-12 81.8 -0.1 39 294-333 76-114 (192)
144 4fs7_A Uncharacterized protein 98.2 3.8E-08 1.3E-12 96.6 -5.8 145 295-472 229-376 (394)
145 2wfh_A SLIT homolog 2 protein 98.1 1.1E-06 3.6E-11 76.6 3.2 80 272-356 32-111 (193)
146 2o6r_A Variable lymphocyte rec 98.1 1.3E-06 4.4E-11 75.0 2.4 14 399-412 122-135 (177)
147 2o6r_A Variable lymphocyte rec 98.0 1.1E-06 3.7E-11 75.4 1.8 9 220-228 29-37 (177)
148 1w8a_A SLIT protein; signaling 98.0 4.6E-07 1.6E-11 78.9 -1.4 89 242-334 51-139 (192)
149 4gt6_A Cell surface protein; l 97.9 1.2E-06 4.1E-11 85.9 -0.4 54 128-192 65-121 (394)
150 4b8c_D Glucose-repressible alc 97.9 1E-06 3.4E-11 93.3 -2.2 83 268-357 221-303 (727)
151 4gt6_A Cell surface protein; l 97.8 7.1E-06 2.4E-10 80.3 2.6 127 241-384 261-387 (394)
152 3g39_A Variable lymphocyte rec 97.8 1E-05 3.4E-10 68.7 2.7 39 294-333 52-90 (170)
153 2r9u_A Variable lymphocyte rec 97.7 1.1E-05 3.6E-10 68.9 2.6 39 294-333 55-93 (174)
154 4b8c_D Glucose-repressible alc 97.7 5.9E-06 2E-10 87.4 -0.2 112 291-418 219-332 (727)
155 2r9u_A Variable lymphocyte rec 97.4 4.4E-05 1.5E-09 65.0 1.9 64 269-334 55-118 (174)
156 3g39_A Variable lymphocyte rec 97.4 4.4E-05 1.5E-09 64.7 1.9 64 269-334 52-115 (170)
157 2ifg_A High affinity nerve gro 97.3 6.8E-05 2.3E-09 71.9 2.1 63 271-334 31-93 (347)
158 3rw6_A Nuclear RNA export fact 97.0 0.0015 5.1E-08 59.2 7.7 83 268-354 167-258 (267)
159 2ifg_A High affinity nerve gro 96.9 0.00031 1.1E-08 67.2 2.4 100 275-384 12-112 (347)
160 3rw6_A Nuclear RNA export fact 96.4 0.0047 1.6E-07 55.9 6.4 10 297-306 221-230 (267)
161 4h09_A Hypothetical leucine ri 93.8 0.012 4.2E-07 56.8 0.4 106 242-356 237-342 (379)
162 4h09_A Hypothetical leucine ri 93.8 0.01 3.5E-07 57.3 -0.2 131 180-331 212-343 (379)
163 3rfe_A Platelet glycoprotein I 78.9 1.2 4E-05 35.0 2.8 37 296-333 31-67 (130)
164 3rfe_A Platelet glycoprotein I 75.8 0.91 3.1E-05 35.7 1.3 36 435-473 31-66 (130)
165 2iu1_A EIF5, eukaryotic transl 68.6 1.3 4.4E-05 37.9 0.6 18 515-532 143-160 (208)
166 2lz0_A Uncharacterized protein 49.1 5.8 0.0002 29.3 1.2 39 290-330 14-52 (100)
167 3bbo_G Ribosomal protein L4; l 47.9 5.4 0.00018 35.8 0.9 13 511-523 247-259 (293)
168 2ful_A EIF-5, eukaryotic trans 36.3 13 0.00044 30.8 1.4 16 516-531 150-165 (177)
169 1zyi_A Methylosome subunit pic 22.8 18 0.00061 29.6 0.0 8 526-533 144-151 (171)
170 1paq_A Translation initiation 22.5 34 0.0012 28.6 1.7 18 515-532 169-186 (189)
171 3h4p_A Proteasome subunit alph 21.4 18 0.00061 32.3 -0.3 16 508-523 225-240 (264)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=6.4e-32 Score=283.10 Aligned_cols=432 Identities=17% Similarity=0.196 Sum_probs=333.3
Q ss_pred CcccceeeccCCCCCchH-------------HHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecc
Q 008973 3 RPTLHELCLHNCADFSGK-------------LLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILM 69 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~-------------~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~ 69 (547)
+|+|++|+|++|..+... .+..++..+++|++|++++ +.+++..+..+...+++|++|+++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~------~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR------MVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEES------CBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeC------cEEcHHHHHHHHHhCCCCcEEeCC
Confidence 688999999998644322 2456677899999999985 457777777777679999999998
Q ss_pred cccccccchhHHHHHHHhhcccceeeccCcchH-----hhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccC--CChh
Q 008973 70 FDISLFLRHNFARVWALASEKLTSLEIGYISSV-----MVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDY--ITDA 142 (547)
Q Consensus 70 ~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~ 142 (547)
++.. +....+..+ ...+++|++|+++.+... .+..+ ...+++|++|+++.+. +++.
T Consensus 139 ~~~~-~~~~~l~~~-~~~~~~L~~L~L~~~~i~~~~~~~l~~~---------------~~~~~~L~~L~l~~~~~~~~~~ 201 (594)
T 2p1m_B 139 SCEG-FSTDGLAAI-AATCRNLKELDLRESDVDDVSGHWLSHF---------------PDTYTSLVSLNISCLASEVSFS 201 (594)
T ss_dssp SCEE-EEHHHHHHH-HHHCTTCCEEECTTCEEECCCGGGGGGS---------------CTTCCCCCEEECTTCCSCCCHH
T ss_pred CcCC-CCHHHHHHH-HHhCCCCCEEeCcCCccCCcchHHHHHH---------------hhcCCcCcEEEecccCCcCCHH
Confidence 6532 333334444 234589999999865411 12222 4468999999999764 7788
Q ss_pred HHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHH---HHHHHHcCC
Q 008973 143 MVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLG---ILLMADKCA 219 (547)
Q Consensus 143 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~~l~~~~~ 219 (547)
.+..+...+++|++|++++|. .++. ....+..+++|++|++..+.. .+.... +......|+
T Consensus 202 ~l~~l~~~~~~L~~L~L~~~~--------~~~~-l~~~~~~~~~L~~L~l~~~~~-------~~~~~~~~~l~~~l~~~~ 265 (594)
T 2p1m_B 202 ALERLVTRCPNLKSLKLNRAV--------PLEK-LATLLQRAPQLEELGTGGYTA-------EVRPDVYSGLSVALSGCK 265 (594)
T ss_dssp HHHHHHHHCTTCCEEECCTTS--------CHHH-HHHHHHHCTTCSEEECSBCCC-------CCCHHHHHHHHHHHHTCT
T ss_pred HHHHHHHhCCCCcEEecCCCC--------cHHH-HHHHHhcCCcceEcccccccC-------ccchhhHHHHHHHHhcCC
Confidence 888888889999999999972 2222 222345899999999853211 122222 222346789
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh-cCCCC
Q 008973 220 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGI 298 (547)
Q Consensus 220 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L 298 (547)
+|+.|. +........+..+...+++|++|++++|. +++..+..+...+++|++|++.+| +.+.++..+. .+++|
T Consensus 266 ~L~~Ls--~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 266 ELRCLS--GFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDL 340 (594)
T ss_dssp TCCEEE--CCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTC
T ss_pred Cccccc--CCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCC
Confidence 999983 22334445566666678999999999987 898888888889999999999996 5566665554 58999
Q ss_pred CEEeC--------CCCCCCChHHHHhhh-CCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeC-----CCCCCc---
Q 008973 299 KVLDL--------RDCKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR-----GCKRLT--- 361 (547)
Q Consensus 299 ~~L~l--------~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~-----~~~~~~--- 361 (547)
+.|++ ..+..+++.++..+. .+++|++|.+..+.+++.++..+.. .+++|+.|+++ +|..++
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCc
Confidence 99999 345578888887776 5999999988888999999888876 69999999999 677888
Q ss_pred -HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEE
Q 008973 362 -DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLL 440 (547)
Q Consensus 362 -~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L 440 (547)
+.++..++..+ ++|+.|++++ .+++.++..+...+++|+.|++++| .+++.++..++. .+++|+.|
T Consensus 420 ~~~~~~~l~~~~--~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~--------~~~~L~~L 486 (594)
T 2p1m_B 420 LDIGFGAIVEHC--KDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLS--------GCDSLRKL 486 (594)
T ss_dssp THHHHHHHHHHC--TTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHH--------HCTTCCEE
T ss_pred hhhHHHHHHhhC--CCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHh--------cCCCcCEE
Confidence 78888777766 8999999976 7899999988878999999999999 699999998876 88999999
Q ss_pred ecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC-CHHHHHHHHhhCCCcEeeccC
Q 008973 441 DLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV-NRDILDALARSRPFLNVACRG 494 (547)
Q Consensus 441 ~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~~ 494 (547)
+|++|+ +++.++..+.. .+|+|+.|++++|+ ....++.+....|.+++....
T Consensus 487 ~L~~n~-~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 487 EIRDCP-FGDKALLANAS-KLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp EEESCS-CCHHHHHHTGG-GGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred ECcCCC-CcHHHHHHHHH-hCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 999998 79888876765 68999999999997 466788888889999876543
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.98 E-value=2.8e-30 Score=270.48 Aligned_cols=429 Identities=16% Similarity=0.172 Sum_probs=252.3
Q ss_pred CcccceeeccCCCCCc-------------hHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCc-cceeec
Q 008973 3 RPTLHELCLHNCADFS-------------GKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQ-LEALIL 68 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~-------------~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~-L~~L~L 68 (547)
+++|++|+|++|+.+. ...+..++.++++|++|++++ +.+++..+..+...++. |++|++
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~------~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRR------MIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEES------CBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeec------cEecHHHHHHHHHhccccCcEEEC
Confidence 5778888887765322 234556666888888888875 35666555555554555 888888
Q ss_pred ccccccccchhHHHHHHHhhcccceeeccCcchH-----hhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCC---
Q 008973 69 MFDISLFLRHNFARVWALASEKLTSLEIGYISSV-----MVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYIT--- 140 (547)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--- 140 (547)
+.+.. +....+..+ ...+++|+.|+++.+... ....+ +..+++|++|+++++.++
T Consensus 146 ~~~~~-~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~l~~~---------------~~~~~~L~~L~L~~n~~~~~~ 208 (592)
T 3ogk_B 146 DKCSG-FTTDGLLSI-VTHCRKIKTLLMEESSFSEKDGKWLHEL---------------AQHNTSLEVLNFYMTEFAKIS 208 (592)
T ss_dssp ESCEE-EEHHHHHHH-HHHCTTCSEEECTTCEEECCCSHHHHHH---------------HHHCCCCCEEECTTCCCSSCC
T ss_pred cCCCC-cCHHHHHHH-HhhCCCCCEEECccccccCcchhHHHHH---------------HhcCCCccEEEeeccCCCccC
Confidence 75442 333333333 233478888888765311 11122 234788888888876664
Q ss_pred hhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCC
Q 008973 141 DAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCAS 220 (547)
Q Consensus 141 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (547)
+..+..+...+++|++|++++|. +.. ....+..+++|++|++...... +...........+++
T Consensus 209 ~~~l~~~~~~~~~L~~L~L~~~~---------~~~-l~~~~~~~~~L~~L~l~~~~~~-------~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 209 PKDLETIARNCRSLVSVKVGDFE---------ILE-LVGFFKAAANLEEFCGGSLNED-------IGMPEKYMNLVFPRK 271 (592)
T ss_dssp HHHHHHHHHHCTTCCEEECSSCB---------GGG-GHHHHHHCTTCCEEEECBCCCC-------TTCTTSSSCCCCCTT
T ss_pred HHHHHHHHhhCCCCcEEeccCcc---------HHH-HHHHHhhhhHHHhhcccccccc-------cchHHHHHHhhcccc
Confidence 56666677788888888888862 221 1133456778888877431100 000000000123456
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHh-hcCCCCC
Q 008973 221 MESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL-ASNTGIK 299 (547)
Q Consensus 221 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~~~~L~ 299 (547)
|+.|.++++ ....+..++..+++|++|++++|. +++..+..+...+++|++|++.+ .+.+.++..+ ..+++|+
T Consensus 272 L~~L~l~~~---~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 272 LCRLGLSYM---GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCEEEETTC---CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCC
T ss_pred ccccCcccc---chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCC
Confidence 666666543 122233344556677777777654 66666655566666777777763 3344444433 3566677
Q ss_pred EEeCCC----------CCCCChHHHHhhh-CCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeC---CCCCCcH---
Q 008973 300 VLDLRD----------CKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR---GCKRLTD--- 362 (547)
Q Consensus 300 ~L~l~~----------~~~l~~~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~---~~~~~~~--- 362 (547)
+|++.+ |..+++.++..+. .+++|++|+++.+.+++..+..+.. .+++|+.|+++ .|+.+++
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCCSCCSSCCC
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecCCCccccCchH
Confidence 777763 4456665555433 4677777777666666666666655 56677777765 2344553
Q ss_pred -HHHHHHhccCCCCCccEEecCCCC-CCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEE
Q 008973 363 -KCISALFDGTSKLQLQELDLSNLP-HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLL 440 (547)
Q Consensus 363 -~~~~~l~~~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L 440 (547)
.++..+..++ ++|++|++++|. .+++.++..+...+++|+.|++++| .+++.++..+.. .+++|++|
T Consensus 425 ~~~~~~~~~~~--~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~--------~~~~L~~L 493 (592)
T 3ogk_B 425 DNGVRSLLIGC--KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSR--------GCPNLQKL 493 (592)
T ss_dssp HHHHHHHHHHC--TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHT--------CCTTCCEE
T ss_pred HHHHHHHHHhC--CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHh--------cCcccCee
Confidence 3555555444 667777776543 3666666666666677777777766 566666666655 66677777
Q ss_pred ecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC-CHHHHHHHHhhCCCcEee
Q 008973 441 DLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV-NRDILDALARSRPFLNVA 491 (547)
Q Consensus 441 ~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~ 491 (547)
+|++|+ +++.++..+.. .+|+|+.|++++|. ....+..+....|.+.+.
T Consensus 494 ~l~~n~-l~~~~~~~~~~-~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 494 EMRGCC-FSERAIAAAVT-KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp EEESCC-CBHHHHHHHHH-HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEE
T ss_pred eccCCC-CcHHHHHHHHH-hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEE
Confidence 777776 66666555543 46677777777774 333444555566666554
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.98 E-value=2.4e-30 Score=271.10 Aligned_cols=409 Identities=20% Similarity=0.210 Sum_probs=318.7
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccccchhHHH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFAR 82 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 82 (547)
+++|++|+|++|. ++...+..+.+.+++|++|++.+| ..++..++..+...+++|++|++++|.. .......
T Consensus 104 ~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~-----~~~~~~~l~~~~~~~~~L~~L~L~~~~i--~~~~~~~ 175 (594)
T 2p1m_B 104 YTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSC-----EGFSTDGLAAIAATCRNLKELDLRESDV--DDVSGHW 175 (594)
T ss_dssp CTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESC-----EEEEHHHHHHHHHHCTTCCEEECTTCEE--ECCCGGG
T ss_pred CCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCc-----CCCCHHHHHHHHHhCCCCCEEeCcCCcc--CCcchHH
Confidence 5789999999997 888888888878999999999853 4667777888888899999999997652 2222222
Q ss_pred HHH--HhhcccceeeccCcc----hHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccE
Q 008973 83 VWA--LASEKLTSLEIGYIS----SVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTH 156 (547)
Q Consensus 83 l~~--~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 156 (547)
+.. ...++|+.|+++.+. ...+..+ ...+++|++|+++++. ....+..+...+++|++
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l---------------~~~~~~L~~L~L~~~~-~~~~l~~~~~~~~~L~~ 239 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERL---------------VTRCPNLKSLKLNRAV-PLEKLATLLQRAPQLEE 239 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHH---------------HHHCTTCCEEECCTTS-CHHHHHHHHHHCTTCSE
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHH---------------HHhCCCCcEEecCCCC-cHHHHHHHHhcCCcceE
Confidence 211 123799999998764 2223332 2347999999999762 23347777778999999
Q ss_pred EecCCCCCCCCccccccchhh----hhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCCC
Q 008973 157 LDLRDAPLIEPRITFDLTNSG----LQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRV 232 (547)
Q Consensus 157 L~l~~~~~~~~~~~~~~~~~~----l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 232 (547)
|++.++.. .+.... ...+.++++|+.|.- ........+..+...+++|++|++++|. +
T Consensus 240 L~l~~~~~-------~~~~~~~~~l~~~l~~~~~L~~Ls~----------~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l 301 (594)
T 2p1m_B 240 LGTGGYTA-------EVRPDVYSGLSVALSGCKELRCLSG----------FWDAVPAYLPAVYSVCSRLTTLNLSYAT-V 301 (594)
T ss_dssp EECSBCCC-------CCCHHHHHHHHHHHHTCTTCCEEEC----------CBTCCGGGGGGGHHHHTTCCEEECTTCC-C
T ss_pred cccccccC-------ccchhhHHHHHHHHhcCCCcccccC----------CcccchhhHHHHHHhhCCCCEEEccCCC-C
Confidence 99987632 122211 225668999999942 1223333344444568999999999985 9
Q ss_pred CHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEc--------cCCCCCCHHHHHHhh-cCCCCCEEeC
Q 008973 233 TDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCL--------RWCNLLTNHAIKSLA-SNTGIKVLDL 303 (547)
Q Consensus 233 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l--------~~~~~l~~~~~~~l~-~~~~L~~L~l 303 (547)
++.++..++..+++|++|++++| +++.++..+...+++|++|++ .++..+++.++..+. .+++|+.|.+
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~ 379 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence 99888888889999999999986 777888888888999999999 456788888887776 4999999977
Q ss_pred CCCCCCChHHHHhhh-CCCCccEEEec--C----ccCC----hHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccC
Q 008973 304 RDCKNLGDEALRAIS-SLPQLKILLLD--G----SDIS----DVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 372 (547)
Q Consensus 304 ~~~~~l~~~~~~~l~-~~~~L~~L~l~--~----~~l~----~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 372 (547)
..+ .+++.++..+. .+++|+.|+++ + +.++ +.++..+.. .+++|+.|++++ .+++.++..++..+
T Consensus 380 ~~~-~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~L~~L~L~~--~l~~~~~~~l~~~~ 455 (594)
T 2p1m_B 380 FCR-QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE-HCKDLRRLSLSG--LLTDKVFEYIGTYA 455 (594)
T ss_dssp EES-CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHH-HCTTCCEEECCS--SCCHHHHHHHHHHC
T ss_pred hcC-CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHh-hCCCccEEeecC--cccHHHHHHHHHhc
Confidence 655 88888888776 69999999999 3 4677 667776666 699999999976 69999888887644
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHH
Q 008973 373 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 452 (547)
Q Consensus 373 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 452 (547)
++|+.|++++| .+++.++..+...+++|+.|++++|+ +++.++..+.. .+++|+.|+|++|+ ++..+
T Consensus 456 --~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~--------~l~~L~~L~l~~~~-~~~~~ 522 (594)
T 2p1m_B 456 --KKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANAS--------KLETMRSLWMSSCS-VSFGA 522 (594)
T ss_dssp --TTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGG--------GGGGSSEEEEESSC-CBHHH
T ss_pred --hhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHH--------hCCCCCEEeeeCCC-CCHHH
Confidence 89999999995 68999998887789999999999995 69998887776 78999999999998 79999
Q ss_pred HHHhhCCCCCCCcEEEeeCCC
Q 008973 453 FRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 453 ~~~l~~~~~~~L~~L~l~~~~ 473 (547)
+..+.. .+|.|+...+....
T Consensus 523 ~~~l~~-~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 523 CKLLGQ-KMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHH-HCTTEEEEEECSSS
T ss_pred HHHHHH-hCCCCEEEEecCCC
Confidence 988854 58999877776654
No 4
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2e-29 Score=255.64 Aligned_cols=415 Identities=22% Similarity=0.236 Sum_probs=263.3
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchh---hHHHHHhcCCccceeecccccccccchh
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHIS---DLEELLNGCPQLEALILMFDISLFLRHN 79 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 79 (547)
.++|++|+|+++. ++......++..+++|++|++++ +.++.. .+...+..+++|++|+++++.. ....
T Consensus 2 ~~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~------~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l--~~~~ 72 (461)
T 1z7x_W 2 SLDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDD------CGLTEARCKDISSALRVNPALAELNLRSNEL--GDVG 72 (461)
T ss_dssp CEEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEES------SCCCHHHHHHHHHHHHTCTTCCEEECTTCCC--HHHH
T ss_pred Cccceehhhhhcc-cCchhHHHHHhhcCCccEEEccC------CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC--ChHH
Confidence 5789999999886 88888888788999999999996 455654 4556677789999999986432 2222
Q ss_pred HHHHHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHH---HhcCCCccE
Q 008973 80 FARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTI---SQGLVSLTH 156 (547)
Q Consensus 80 ~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~~L~~ 156 (547)
...+..... ...++|++|+++++.+++..+..+ ...+++|++
T Consensus 73 ~~~l~~~l~-----------------------------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 117 (461)
T 1z7x_W 73 VHCVLQGLQ-----------------------------------TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117 (461)
T ss_dssp HHHHHHTTC-----------------------------------STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCE
T ss_pred HHHHHHHHh-----------------------------------hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeE
Confidence 322211000 011256666666666665433322 235566666
Q ss_pred EecCCCCCCCCccccccchhhhhhhc-----cCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCC
Q 008973 157 LDLRDAPLIEPRITFDLTNSGLQQIN-----QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCR 231 (547)
Q Consensus 157 L~l~~~~~~~~~~~~~~~~~~l~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 231 (547)
|++++| .+++.+...+. ..++|++|+++++ .........+......+++|++|+++++ .
T Consensus 118 L~Ls~n---------~i~~~~~~~l~~~l~~~~~~L~~L~L~~n------~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~ 181 (461)
T 1z7x_W 118 LHLSDN---------LLGDAGLQLLCEGLLDPQCRLEKLQLEYC------SLSAASCEPLASVLRAKPDFKELTVSNN-D 181 (461)
T ss_dssp EECCSS---------BCHHHHHHHHHHHHTSTTCCCCEEECTTS------CCBGGGHHHHHHHHHHCTTCCEEECCSS-B
T ss_pred EECCCC---------cCchHHHHHHHHHHhcCCCcceEEECCCC------CCCHHHHHHHHHHHhhCCCCCEEECcCC-C
Confidence 766665 34443333332 2446777766431 1111111222333345677777777774 5
Q ss_pred CCHHHHHHHHH----cCCCCcEEEecCCCCCCHHH---HHHHHhcCCCccEEEccCCCCCCHHHHHHhh-----cCCCCC
Q 008973 232 VTDTGFKTILH----SCSNLYKLRVSHGTQLTDLV---FHDISATSLSLTHVCLRWCNLLTNHAIKSLA-----SNTGIK 299 (547)
Q Consensus 232 ~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-----~~~~L~ 299 (547)
+.+.++..+.. ..++|+.|++++| .++..+ +......+++|++|+++++ .+++.++..+. .+++|+
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCC
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCce
Confidence 66655555443 2457888888775 444433 2333445678888888874 56665544433 477888
Q ss_pred EEeCCCCCCCChHHHHh----hhCCCCccEEEecCccCChHhHHHHHHh---cCCCccEEEeCCCCCCcHHHHHHHh---
Q 008973 300 VLDLRDCKNLGDEALRA----ISSLPQLKILLLDGSDISDVGVSYLRLT---VITSLVKLSLRGCKRLTDKCISALF--- 369 (547)
Q Consensus 300 ~L~l~~~~~l~~~~~~~----l~~~~~L~~L~l~~~~l~~~~l~~l~~~---~~~~L~~L~l~~~~~~~~~~~~~l~--- 369 (547)
+|++++| .+++.+... +..+++|++|++++|.+++.+...+... ..++|+.|++++|. +++.+...++
T Consensus 260 ~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l 337 (461)
T 1z7x_W 260 TLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVL 337 (461)
T ss_dssp EEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHH
T ss_pred EEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHH
Confidence 8888887 677765433 3457888888888888877776655541 23688888888875 6654433322
Q ss_pred ccCCCCCccEEecCCCCCCCHHHHHHHHhc----CCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCC
Q 008973 370 DGTSKLQLQELDLSNLPHLSDNGILTLATC----RVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 445 (547)
Q Consensus 370 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 445 (547)
..+ ++|++|+++++ .+++.+...+... .++|+.|++++| .+++.+...++..+. .+++|++|++++|
T Consensus 338 ~~~--~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~-----~~~~L~~L~l~~N 408 (461)
T 1z7x_W 338 AQN--RFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLL-----ANHSLRELDLSNN 408 (461)
T ss_dssp HHC--SSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHH-----HCCCCCEEECCSS
T ss_pred hhC--CCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHH-----hCCCccEEECCCC
Confidence 223 78888888884 7777766655542 568888888888 688877666665443 6788888888888
Q ss_pred CCCCHHHHHHhhC---CCCCCCcEEEeeCCCC----HHHHHHHHhhCCCcEee
Q 008973 446 GGITQLAFRWLKK---PYFPRLRWLGVTGSVN----RDILDALARSRPFLNVA 491 (547)
Q Consensus 446 ~~i~~~~~~~l~~---~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~l~~~ 491 (547)
+ ++..++..+.. ...++|+.|.+.++.. .+.++.+...+|.+++.
T Consensus 409 ~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 409 C-LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp S-CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred C-CCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 6 88877766654 1234688888877642 34556677788888764
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=7.6e-30 Score=267.15 Aligned_cols=417 Identities=16% Similarity=0.168 Sum_probs=304.5
Q ss_pred HHHHHhcCCCCceeecCcchhh--------cCCccchhhHHHHHhcCCccceeecccccccccchhHHHHHHHhhcccce
Q 008973 22 LSEIGGKCKDLRSLYLGSVAEK--------RGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTS 93 (547)
Q Consensus 22 l~~l~~~~~~L~~L~l~~~~~~--------~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~L~~ 93 (547)
+..++..+++|++|+++++... .........+..+...+++|++|+|+++ .+.......+....+.+|++
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM--IVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC--BCCHHHHHHHHHHHGGGCCE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc--EecHHHHHHHHHhccccCcE
Confidence 3456678999999999754321 1222333456677778999999999865 34455555554444456999
Q ss_pred eeccCcc---hHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhH---HHHHHhcCCCccEEecCCCCCCCC
Q 008973 94 LEIGYIS---SVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAM---VGTISQGLVSLTHLDLRDAPLIEP 167 (547)
Q Consensus 94 L~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~ 167 (547)
|+++.+. ...+... ...+++|++|+|+.+.+++.. +..+...+++|++|++++|..
T Consensus 143 L~L~~~~~~~~~~l~~~---------------~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~--- 204 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSI---------------VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF--- 204 (592)
T ss_dssp EEEESCEEEEHHHHHHH---------------HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC---
T ss_pred EECcCCCCcCHHHHHHH---------------HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC---
Confidence 9998754 2222222 234899999999987665443 666777899999999998742
Q ss_pred ccccccchhhhhhh-ccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCCCCH-HHHHHHHHcCC
Q 008973 168 RITFDLTNSGLQQI-NQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTD-TGFKTILHSCS 245 (547)
Q Consensus 168 ~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~ 245 (547)
..+....+..+ ..+++|++|++.+ +. +.. +......+++|++|.++.+..... ......+..++
T Consensus 205 ---~~~~~~~l~~~~~~~~~L~~L~L~~--------~~-~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 205 ---AKISPKDLETIARNCRSLVSVKVGD--------FE-ILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp ---SSCCHHHHHHHHHHCTTCCEEECSS--------CB-GGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred ---CccCHHHHHHHHhhCCCCcEEeccC--------cc-HHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 12334445544 5889999999954 21 111 334456689999999975322211 11111234578
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHH-HhhcCCCCCEEeCCCCCCCChHHHHhh-hCCCCc
Q 008973 246 NLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIK-SLASNTGIKVLDLRDCKNLGDEALRAI-SSLPQL 323 (547)
Q Consensus 246 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~~~~L~~L~l~~~~~l~~~~~~~l-~~~~~L 323 (547)
+|+.|.++++ ....+..+...+++|++|++++|. ++...+. .+..+++|++|++.+ .+.+.++..+ ..+++|
T Consensus 271 ~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 271 KLCRLGLSYM---GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp TCCEEEETTC---CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTC
T ss_pred cccccCcccc---chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCC
Confidence 8999999863 223344456678899999999976 7777664 356899999999983 5667666665 479999
Q ss_pred cEEEecC-----------ccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecC---CCCCCC
Q 008973 324 KILLLDG-----------SDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLS---NLPHLS 389 (547)
Q Consensus 324 ~~L~l~~-----------~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~---~~~~l~ 389 (547)
++|++++ +.+++.++..+.. .+++|++|++ +|..+++.++..++..+ ++|++|+++ .|+.++
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~~L~l-~~~~l~~~~~~~l~~~~--~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQ-GCQELEYMAV-YVSDITNESLESIGTYL--KNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHH-HCTTCSEEEE-EESCCCHHHHHHHHHHC--CSCCEEEEEECSCCSCCS
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHh-hCccCeEEEe-ecCCccHHHHHHHHhhC--CCCcEEEEeecCCCcccc
Confidence 9999993 5888888887776 7999999999 55679999998887766 899999997 356777
Q ss_pred H----HHHHHHHhcCCCCcEEeccCCC-CCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCC
Q 008973 390 D----NGILTLATCRVPISELRVRQCP-LIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRL 464 (547)
Q Consensus 390 ~----~~~~~l~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L 464 (547)
+ .++..+...+++|+.|++++|. .+++.++..++. .+++|+.|+|++|. +++.++..+.. .|++|
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~--------~~~~L~~L~L~~n~-l~~~~~~~~~~-~~~~L 490 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ--------YSPNVRWMLLGYVG-ESDEGLMEFSR-GCPNL 490 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH--------SCTTCCEEEECSCC-SSHHHHHHHHT-CCTTC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH--------hCccceEeeccCCC-CCHHHHHHHHh-cCccc
Confidence 4 5777778789999999998775 489999999887 78999999999997 99988887766 69999
Q ss_pred cEEEeeCCC-CHHHHHHHHhhCCCcEeec
Q 008973 465 RWLGVTGSV-NRDILDALARSRPFLNVAC 492 (547)
Q Consensus 465 ~~L~l~~~~-~~~~~~~~~~~~~~l~~~~ 492 (547)
+.|++++|. ....+..+....|.++...
T Consensus 491 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp CEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred CeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 999999997 5566777777888888654
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.5e-26 Score=234.43 Aligned_cols=389 Identities=21% Similarity=0.279 Sum_probs=284.7
Q ss_pred CcccceeeccCCCCCchHH---HHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCC----ccceeecccccccc
Q 008973 3 RPTLHELCLHNCADFSGKL---LSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCP----QLEALILMFDISLF 75 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~----~L~~L~L~~~~~~~ 75 (547)
+++|++|+|++|. ++... +...+..+++|++|++++ +.+++.++..+...++ +|++|++++|..
T Consensus 27 ~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~------n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i-- 97 (461)
T 1z7x_W 27 LQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRS------NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-- 97 (461)
T ss_dssp HTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTT------CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC--
T ss_pred cCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCC------CcCChHHHHHHHHHHhhCCCceeEEEccCCCC--
Confidence 4789999999997 87664 445556889999999995 5777777777777676 799999986542
Q ss_pred cchhHHHHHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhc----C
Q 008973 76 LRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQG----L 151 (547)
Q Consensus 76 ~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~----~ 151 (547)
...+...+ +.. +..+++|++|+++++.+++..+..+... .
T Consensus 98 ~~~~~~~l---------------------~~~---------------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 98 TGAGCGVL---------------------SST---------------LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp BGGGHHHH---------------------HHH---------------TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred CHHHHHHH---------------------HHH---------------HccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 22222222 111 5567899999999998988777766653 4
Q ss_pred CCccEEecCCCCCCCCccccccchhhh----hhhccCCCcceEEcccccccccccccccChHHHHHHHH----cCCCCcE
Q 008973 152 VSLTHLDLRDAPLIEPRITFDLTNSGL----QQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMAD----KCASMES 223 (547)
Q Consensus 152 ~~L~~L~l~~~~~~~~~~~~~~~~~~l----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~----~~~~L~~ 223 (547)
++|++|++++| .++..+. ..+..+++|++|++++ ..+.+.+...+.. ..++|++
T Consensus 142 ~~L~~L~L~~n---------~l~~~~~~~l~~~l~~~~~L~~L~L~~---------n~i~~~~~~~l~~~l~~~~~~L~~ 203 (461)
T 1z7x_W 142 CRLEKLQLEYC---------SLSAASCEPLASVLRAKPDFKELTVSN---------NDINEAGVRVLCQGLKDSPCQLEA 203 (461)
T ss_dssp CCCCEEECTTS---------CCBGGGHHHHHHHHHHCTTCCEEECCS---------SBCHHHHHHHHHHHHHHSCCCCCE
T ss_pred CcceEEECCCC---------CCCHHHHHHHHHHHhhCCCCCEEECcC---------CCcchHHHHHHHHHHhcCCCCceE
Confidence 57999999998 3444332 3445789999999963 2355555544433 4569999
Q ss_pred EEEcCCCCCCHHH---HHHHHHcCCCCcEEEecCCCCCCHHHHHHHHh----cCCCccEEEccCCCCCCHHHHHH----h
Q 008973 224 ICLGGFCRVTDTG---FKTILHSCSNLYKLRVSHGTQLTDLVFHDISA----TSLSLTHVCLRWCNLLTNHAIKS----L 292 (547)
Q Consensus 224 L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~~----l 292 (547)
|++++| .+++.+ +...+..+++|++|++++| .+++.++..+.. .+++|++|++++| .++..+... +
T Consensus 204 L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 204 LKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVL 280 (461)
T ss_dssp EECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHH
T ss_pred EEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHH
Confidence 999996 666544 4455667999999999986 677776655543 5789999999995 778766443 4
Q ss_pred hcCCCCCEEeCCCCCCCChHHHHhhh-----CCCCccEEEecCccCChHhHHHHHH--hcCCCccEEEeCCCCCCcHHHH
Q 008973 293 ASNTGIKVLDLRDCKNLGDEALRAIS-----SLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCI 365 (547)
Q Consensus 293 ~~~~~L~~L~l~~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~l~~~~l~~l~~--~~~~~L~~L~l~~~~~~~~~~~ 365 (547)
..+++|++|++++| .+++.+...+. ..++|++|++++|.+++.+...+.. ..+++|+.|+++++ .+++.+.
T Consensus 281 ~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~ 358 (461)
T 1z7x_W 281 RAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGV 358 (461)
T ss_dssp HHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHH
T ss_pred hhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccH
Confidence 46899999999998 78777766655 2379999999999998876544432 14799999999997 5888777
Q ss_pred HHHhccC--CCCCccEEecCCCCCCCHHHHHHHH---hcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEE
Q 008973 366 SALFDGT--SKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLL 440 (547)
Q Consensus 366 ~~l~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L 440 (547)
..++... ..++|++|++++| .+++.++..+. ..+++|+.|++++| .+++.++..+...+.. ..++|+.|
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~----~~~~L~~L 432 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQ----PGCLLEQL 432 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTS----TTCCCCEE
T ss_pred HHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhcc----CCcchhhe
Confidence 7665431 1379999999995 88876555443 35899999999999 7999999888875432 34579999
Q ss_pred ecCCCCCCCHH---HHHHhhCCCCCCCcEE
Q 008973 441 DLYNCGGITQL---AFRWLKKPYFPRLRWL 467 (547)
Q Consensus 441 ~l~~~~~i~~~---~~~~l~~~~~~~L~~L 467 (547)
.+.++. +... .+..+.. ..|.|+.+
T Consensus 433 ~~~~~~-~~~~~~~~l~~l~~-~~p~l~i~ 460 (461)
T 1z7x_W 433 VLYDIY-WSEEMEDRLQALEK-DKPSLRVI 460 (461)
T ss_dssp ECTTCC-CCHHHHHHHHHHHH-HCTTSEEE
T ss_pred eecccc-cCHHHHHHHHHHhc-cCCCcEee
Confidence 998886 5543 3444443 57888765
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=2.7e-26 Score=240.70 Aligned_cols=145 Identities=12% Similarity=0.034 Sum_probs=77.4
Q ss_pred cccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeeccccccc-ccchhHHH
Q 008973 4 PTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISL-FLRHNFAR 82 (547)
Q Consensus 4 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~ 82 (547)
++++.|+|+++. ++......+ .++++|++|++++ +.++... ...+.++++|++|+++++... ..+..+..
T Consensus 33 ~~l~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~------n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 33 NSTECLEFSFNV-LPTIQNTTF-SRLINLTFLDLTR------CQIYWIH-EDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp TTCCEEECTTCC-CSEECTTTS-TTCTTCSEEECTT------CCCCEEC-TTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CcCcEEEccCCc-cCcCChhHh-ccCccceEEECCC------CccceeC-hhhccCccccCeeeCCCCcccccChhhhcc
Confidence 567888888876 655433333 5788888888875 2332211 122356778888888765432 12222222
Q ss_pred HHHHhhcccceeeccCcchHhhh-hh-------cCCCcCCCCCCCc--cCCCCCCCccEEEeeccCCChhHHHHHHhcCC
Q 008973 83 VWALASEKLTSLEIGYISSVMVT-EL-------LSPNVEPHQSPNQ--IRPSILPGIQKLCLSVDYITDAMVGTISQGLV 152 (547)
Q Consensus 83 l~~~~~~~L~~L~l~~~~~~~~~-~~-------~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 152 (547)
+ ++|+.|+++........ .. -...+....+... ..+..+++|++|+++.+.++......+ ..++
T Consensus 104 l-----~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~ 177 (606)
T 3t6q_A 104 P-----KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQ 177 (606)
T ss_dssp C-----TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH-HTTT
T ss_pred c-----ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh-hhhc
Confidence 2 67777777654322211 00 0011222222221 112236777888877776665433333 3677
Q ss_pred Ccc--EEecCCCC
Q 008973 153 SLT--HLDLRDAP 163 (547)
Q Consensus 153 ~L~--~L~l~~~~ 163 (547)
+|+ +|++++|.
T Consensus 178 ~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 178 QATNLSLNLNGND 190 (606)
T ss_dssp TCCSEEEECTTCC
T ss_pred ccceeEEecCCCc
Confidence 777 77777764
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=5.1e-22 Score=195.87 Aligned_cols=262 Identities=19% Similarity=0.203 Sum_probs=173.4
Q ss_pred HcCCCCcEEEEcCCCCCCHHHHHHHH---HcCCCCcEEEecCCC--CCCH---HHHH---HHHhcCCCccEEEccCCCCC
Q 008973 216 DKCASMESICLGGFCRVTDTGFKTIL---HSCSNLYKLRVSHGT--QLTD---LVFH---DISATSLSLTHVCLRWCNLL 284 (547)
Q Consensus 216 ~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~--~~~~---~~~~---~~~~~~~~L~~L~l~~~~~l 284 (547)
..+++|++|+|++| .+...+...+. ..+++|+.|++++|. .++. .++. ..+..+++|++|+++++ .+
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF 106 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cC
Confidence 44677777777774 66666554433 356778888887652 2221 2222 22346678888888884 55
Q ss_pred CHH----HHHHhhcCCCCCEEeCCCCCCCChHHHHhhh----CC---------CCccEEEecCccCChHhHHHHHH--hc
Q 008973 285 TNH----AIKSLASNTGIKVLDLRDCKNLGDEALRAIS----SL---------PQLKILLLDGSDISDVGVSYLRL--TV 345 (547)
Q Consensus 285 ~~~----~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~----~~---------~~L~~L~l~~~~l~~~~l~~l~~--~~ 345 (547)
+.. ....+..+++|++|++++| .++..+...+. .+ ++|++|++++|.+++.++..+.. ..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 542 2234567888999999888 67655554444 33 89999999999888666653321 14
Q ss_pred CCCccEEEeCCCCCCcHHHHHHHhc-c-CCCCCccEEecCCCCCCCHHHHHHH---HhcCCCCcEEeccCCCCCCHHHHH
Q 008973 346 ITSLVKLSLRGCKRLTDKCISALFD-G-TSKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVI 420 (547)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~l~~-~-~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~ 420 (547)
+++|+.|++++| .+++.++..++. . ..+++|++|++++ +.+++.+...+ ...+++|+.|++++| .+++.+..
T Consensus 186 ~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-n~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~ 262 (386)
T 2ca6_A 186 HRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQD-NTFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAA 262 (386)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCS-SCCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHH
T ss_pred CCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcC-CCCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHH
Confidence 889999999987 488777655443 1 2238999999998 47876554443 346789999999999 68888777
Q ss_pred HHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhC---CCCCCCcEEEeeCCC-C--HHHHHHHHhhCCC
Q 008973 421 ALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV-N--RDILDALARSRPF 487 (547)
Q Consensus 421 ~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~-~--~~~~~~~~~~~~~ 487 (547)
.++..+... .+++|+.|+|++|. ++..++..+.. ..+|+|+.|++++|. . ...+..+....|.
T Consensus 263 ~l~~~l~~~---~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 263 AVVDAFSKL---ENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 331 (386)
T ss_dssp HHHHHHHTC---SSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHH
T ss_pred HHHHHHhhc---cCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhh
Confidence 766543200 37899999999997 88854444432 137999999999996 1 2224555544443
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=3.7e-24 Score=221.81 Aligned_cols=388 Identities=17% Similarity=0.162 Sum_probs=198.6
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccc-cchhHH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLF-LRHNFA 81 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~ 81 (547)
+++|++|+|+++. ++......+ .++++|++|++++ +.++.... ..+.++++|++|+++++.... ....+.
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~------n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGHGDL-RACANLQVLILKS------SRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp CTTCCEEECCSSC-CCEECSSTT-SSCTTCCEEECTT------SCCCEECT-TTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred CCCccEEECcCCc-cCccChhhh-hcCCcccEEECCC------CCcCccCh-hhccccccCCEEECCCCccCccCHHHhc
Confidence 4689999999996 665433334 5899999999985 33332211 234678999999998765421 111122
Q ss_pred HHHHHhhcccceeeccCcchHh--hhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccC-CChhHHHHHHhcCCCccEEe
Q 008973 82 RVWALASEKLTSLEIGYISSVM--VTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDY-ITDAMVGTISQGLVSLTHLD 158 (547)
Q Consensus 82 ~l~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~ 158 (547)
.+ ++|+.|+++...... .+.. +..+++|++|+++.+. +... .......+++|++|+
T Consensus 96 ~l-----~~L~~L~Ls~n~l~~~~~~~~---------------~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 96 PL-----SSLKYLNLMGNPYQTLGVTSL---------------FPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSLNELE 154 (549)
T ss_dssp TC-----TTCCEEECTTCCCSSSCSSCS---------------CTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEE
T ss_pred cC-----CCCcEEECCCCcccccchhhh---------------hhccCCccEEECCCCcccccc-CHhhhhcccccCeee
Confidence 22 789999988653221 1111 4557777888877665 3221 111223577777777
Q ss_pred cCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCC-------------------
Q 008973 159 LRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCA------------------- 219 (547)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------- 219 (547)
+++|.. +......+..+++|++|++..+ ..... ...+...++
T Consensus 155 L~~n~l---------~~~~~~~l~~l~~L~~L~l~~n---------~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 215 (549)
T 2z81_A 155 IKALSL---------RNYQSQSLKSIRDIHHLTLHLS---------ESAFL-LEIFADILSSVRYLELRDTNLARFQFSP 215 (549)
T ss_dssp EEETTC---------CEECTTTTTTCSEEEEEEEECS---------BSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCC
T ss_pred ccCCcc---------cccChhhhhccccCceEecccC---------ccccc-chhhHhhcccccEEEccCCccccccccc
Confidence 777632 2212223344455555555321 01000 011122344
Q ss_pred --------CCcEEEEcCCCCCCHHHHHHHH---HcCCCCcEEEecCCCCCC-----------------------------
Q 008973 220 --------SMESICLGGFCRVTDTGFKTIL---HSCSNLYKLRVSHGTQLT----------------------------- 259 (547)
Q Consensus 220 --------~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~----------------------------- 259 (547)
+|+.|+++++ .+.+..+..+. ..+++|+.+++++|....
T Consensus 216 ~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 294 (549)
T 2z81_A 216 LPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294 (549)
T ss_dssp CSSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS
T ss_pred cchhhhhhcccceecccc-ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccc
Confidence 4555555442 34444333332 234455555555432100
Q ss_pred HH----HHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHH---hhhCCCCccEEEecCcc
Q 008973 260 DL----VFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALR---AISSLPQLKILLLDGSD 332 (547)
Q Consensus 260 ~~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~---~l~~~~~L~~L~l~~~~ 332 (547)
.. .+..+....++|+.|+++++ .+...+...+..+++|++|++++| .+....+. .+..+++|+.|++++|.
T Consensus 295 ~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 372 (549)
T 2z81_A 295 QFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNH 372 (549)
T ss_dssp CGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSC
T ss_pred hhhhcccchhhhhhcccceEEEeccC-ccccCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCc
Confidence 00 00011122345666666653 333222222235677777777777 55554322 24567777777777777
Q ss_pred CChHhH--HHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccC
Q 008973 333 ISDVGV--SYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQ 410 (547)
Q Consensus 333 l~~~~l--~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~ 410 (547)
++.... ..+. .+++|+.|++++|. ++. +.... ..+++|++|+++++ .++..... ..++|+.|++++
T Consensus 373 l~~~~~~~~~~~--~l~~L~~L~Ls~N~-l~~--lp~~~--~~~~~L~~L~Ls~N-~l~~l~~~----~~~~L~~L~Ls~ 440 (549)
T 2z81_A 373 LRSMQKTGEILL--TLKNLTSLDISRNT-FHP--MPDSC--QWPEKMRFLNLSST-GIRVVKTC----IPQTLEVLDVSN 440 (549)
T ss_dssp CCCHHHHHHHGG--GCTTCCEEECTTCC-CCC--CCSCC--CCCTTCCEEECTTS-CCSCCCTT----SCTTCSEEECCS
T ss_pred ccccccchhhhh--cCCCCCEEECCCCC-Ccc--CChhh--cccccccEEECCCC-Ccccccch----hcCCceEEECCC
Confidence 665432 2233 37777777777753 431 11001 12256777777773 44311100 124666666666
Q ss_pred CCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 411 CPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 411 ~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
| .++.. .. .+++|++|++++|. ++. +.... .+++|+.|++++|.
T Consensus 441 N-~l~~~-----~~--------~l~~L~~L~Ls~N~-l~~--ip~~~--~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 441 N-NLDSF-----SL--------FLPRLQELYISRNK-LKT--LPDAS--LFPVLLVMKISRNQ 484 (549)
T ss_dssp S-CCSCC-----CC--------CCTTCCEEECCSSC-CSS--CCCGG--GCTTCCEEECCSSC
T ss_pred C-Chhhh-----cc--------cCChhcEEECCCCc-cCc--CCCcc--cCccCCEEecCCCc
Confidence 6 34431 11 56667777777765 542 21222 26677777777664
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.1e-25 Score=236.06 Aligned_cols=82 Identities=21% Similarity=0.116 Sum_probs=46.5
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccc-cchhHH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLF-LRHNFA 81 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~ 81 (547)
.++|++|+|+++. +.......+ .++++|++|++++ +.++.... ..+..+++|++|+++++.... ....+.
T Consensus 80 l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~------n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 150 (606)
T 3t6q_A 80 QHRLDTLVLTANP-LIFMAETAL-SGPKALKHLFFIQ------TGISSIDF-IPLHNQKTLESLYLGSNHISSIKLPKGF 150 (606)
T ss_dssp CTTCCEEECTTCC-CSEECTTTT-SSCTTCCEEECTT------SCCSCGGG-SCCTTCTTCCEEECCSSCCCCCCCCTTC
T ss_pred ccccCeeeCCCCc-ccccChhhh-cccccccEeeccc------cCcccCCc-chhccCCcccEEECCCCcccccCccccc
Confidence 4678888888886 544333333 5888888888885 23332111 113567788888887654321 111111
Q ss_pred HHHHHhhcccceeeccC
Q 008973 82 RVWALASEKLTSLEIGY 98 (547)
Q Consensus 82 ~l~~~~~~~L~~L~l~~ 98 (547)
. .++|+.|+++.
T Consensus 151 ~-----l~~L~~L~L~~ 162 (606)
T 3t6q_A 151 P-----TEKLKVLDFQN 162 (606)
T ss_dssp C-----CTTCCEEECCS
T ss_pred C-----CcccCEEEccc
Confidence 1 26677777664
No 11
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2e-21 Score=191.58 Aligned_cols=241 Identities=14% Similarity=0.104 Sum_probs=179.0
Q ss_pred HHHHcCCCCcEEEecCCCCCCHHHHHHHH---hcCCCccEEEccCC--CCCC---HHHHH----HhhcCCCCCEEeCCCC
Q 008973 239 TILHSCSNLYKLRVSHGTQLTDLVFHDIS---ATSLSLTHVCLRWC--NLLT---NHAIK----SLASNTGIKVLDLRDC 306 (547)
Q Consensus 239 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~--~~l~---~~~~~----~l~~~~~L~~L~l~~~ 306 (547)
..+..+++|+.|++++| .++..+...+. ..+++|++|++++| +.+. ..++. .+..+++|++|++++|
T Consensus 26 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 34567899999999985 67877666544 46789999999986 3332 22332 3458899999999998
Q ss_pred CCCChHH----HHhhhCCCCccEEEecCccCChHhHHHHHH--hcC---------CCccEEEeCCCCCCcHHHHHHHhc-
Q 008973 307 KNLGDEA----LRAISSLPQLKILLLDGSDISDVGVSYLRL--TVI---------TSLVKLSLRGCKRLTDKCISALFD- 370 (547)
Q Consensus 307 ~~l~~~~----~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~--~~~---------~~L~~L~l~~~~~~~~~~~~~l~~- 370 (547)
.++..+ ...+..+++|++|++++|.+++.+...+.. ..+ ++|++|++++|. +++.++..++.
T Consensus 105 -~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~ 182 (386)
T 2ca6_A 105 -AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKT 182 (386)
T ss_dssp -CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHH
Confidence 677743 345678999999999999998776655544 013 899999999975 77555553332
Q ss_pred --cCCCCCccEEecCCCCCCCHHHHHHHHh----cCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCC
Q 008973 371 --GTSKLQLQELDLSNLPHLSDNGILTLAT----CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 444 (547)
Q Consensus 371 --~~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 444 (547)
.+ ++|++|++++ +.+++.++..+.. .+++|+.|++++| .+++.+...++..+. .+++|+.|+|++
T Consensus 183 l~~~--~~L~~L~L~~-n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~-----~~~~L~~L~L~~ 253 (386)
T 2ca6_A 183 FQSH--RLLHTVKMVQ-NGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALK-----SWPNLRELGLND 253 (386)
T ss_dssp HHHC--TTCCEEECCS-SCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGG-----GCTTCCEEECTT
T ss_pred HHhC--CCcCEEECcC-CCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHc-----cCCCcCEEECCC
Confidence 33 7999999999 4898887665554 6899999999999 698887777766544 789999999999
Q ss_pred CCCCCHHHHHHhhC----CCCCCCcEEEeeCCCCHH-----HHHHHHhhCCCcEeec
Q 008973 445 CGGITQLAFRWLKK----PYFPRLRWLGVTGSVNRD-----ILDALARSRPFLNVAC 492 (547)
Q Consensus 445 ~~~i~~~~~~~l~~----~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~l~~~~ 492 (547)
|. ++..+...+.. ..+++|+.|++++|.-.. ....+....|.++...
T Consensus 254 n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 254 CL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp CC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 98 99876655443 238999999999997433 2233335568887654
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=3.2e-25 Score=237.89 Aligned_cols=407 Identities=16% Similarity=0.108 Sum_probs=231.3
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHH--HHhcCCccceeecccccccccchhH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEE--LLNGCPQLEALILMFDISLFLRHNF 80 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~ 80 (547)
.++|++|+|++|. +.......++.++++|++|++++ +.++...... .+.++++|++|+++++... +...+
T Consensus 125 l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~ 196 (768)
T 3rgz_A 125 CSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSA------NSISGANVVGWVLSDGCGELKHLAISGNKIS-GDVDV 196 (768)
T ss_dssp CTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCS------SCCEEETHHHHHHTTCCTTCCEEECCSSEEE-SCCBC
T ss_pred CCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCC------CccCCcCChhhhhhccCCCCCEEECCCCccc-ccCCc
Confidence 4789999999986 54433333435889999999985 3444333222 2578999999999876542 11111
Q ss_pred HHHHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecC
Q 008973 81 ARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLR 160 (547)
Q Consensus 81 ~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 160 (547)
...++|+.|+++.......... +..+++|++|+++.+.+.......+ ..+++|++|+++
T Consensus 197 -----~~l~~L~~L~Ls~n~l~~~~~~---------------l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls 255 (768)
T 3rgz_A 197 -----SRCVNLEFLDVSSNNFSTGIPF---------------LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNIS 255 (768)
T ss_dssp -----TTCTTCCEEECCSSCCCSCCCB---------------CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECC
T ss_pred -----ccCCcCCEEECcCCcCCCCCcc---------------cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECC
Confidence 2238889998887543221111 4567888999988888776544443 478888888888
Q ss_pred CCCCCCCccccc-------------cchhhhhhhc-cCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEE
Q 008973 161 DAPLIEPRITFD-------------LTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICL 226 (547)
Q Consensus 161 ~~~~~~~~~~~~-------------~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 226 (547)
+|......+... ++......+. .+++|++|+++++. ........+ ..+++|++|++
T Consensus 256 ~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~------l~~~~p~~~----~~l~~L~~L~L 325 (768)
T 3rgz_A 256 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH------FYGAVPPFF----GSCSLLESLAL 325 (768)
T ss_dssp SSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE------EEECCCGGG----GGCTTCCEEEC
T ss_pred CCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc------CCCccchHH----hcCCCccEEEC
Confidence 875321111000 0000001111 13555555554311 111111111 34566677766
Q ss_pred cCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhc--CCCCCEEeCC
Q 008973 227 GGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLAS--NTGIKVLDLR 304 (547)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~L~~L~l~ 304 (547)
++| .+........+..+++|+.|++++|. ++......+....++|+.|+++++ .+.......+.. +++|+.|+++
T Consensus 326 ~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 326 SSN-NFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp CSS-EEEEECCHHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSS-EEEEECCTTTTCSTTCCCCEEECC
T ss_pred CCC-cccCcCCHHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCC-CcCCCcChhhhhcccCCccEEECC
Confidence 664 22211111224456677777776643 111000111122236777777663 222111112222 6778888888
Q ss_pred CCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCC
Q 008973 305 DCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSN 384 (547)
Q Consensus 305 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 384 (547)
+| .+.......+..+++|+.|++++|.++......+.. +++|+.|++++|. ++......+. .+++|++|++++
T Consensus 403 ~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~L~~n~-l~~~~p~~~~---~l~~L~~L~L~~ 475 (768)
T 3rgz_A 403 NN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS--LSKLRDLKLWLNM-LEGEIPQELM---YVKTLETLILDF 475 (768)
T ss_dssp SS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSC-CCSCCCGGGG---GCTTCCEEECCS
T ss_pred CC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc--CCCCCEEECCCCc-ccCcCCHHHc---CCCCceEEEecC
Confidence 87 555444556778888999999888776544444555 8889999988865 3321111111 127899999998
Q ss_pred CCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCC
Q 008973 385 LPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRL 464 (547)
Q Consensus 385 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L 464 (547)
+ .++...... ...+++|+.|++++| .++......+. .+++|+.|+|++|. ++......+.. +++|
T Consensus 476 N-~l~~~~p~~-l~~l~~L~~L~L~~N-~l~~~~p~~~~---------~l~~L~~L~L~~N~-l~~~~p~~l~~--l~~L 540 (768)
T 3rgz_A 476 N-DLTGEIPSG-LSNCTNLNWISLSNN-RLTGEIPKWIG---------RLENLAILKLSNNS-FSGNIPAELGD--CRSL 540 (768)
T ss_dssp S-CCCSCCCGG-GGGCTTCCEEECCSS-CCCSCCCGGGG---------GCTTCCEEECCSSC-CEEECCGGGGG--CTTC
T ss_pred C-cccCcCCHH-HhcCCCCCEEEccCC-ccCCcCChHHh---------cCCCCCEEECCCCc-ccCcCCHHHcC--CCCC
Confidence 5 444221111 226888999999888 45433222222 67889999999887 55332334443 8899
Q ss_pred cEEEeeCCC
Q 008973 465 RWLGVTGSV 473 (547)
Q Consensus 465 ~~L~l~~~~ 473 (547)
+.|++++|.
T Consensus 541 ~~L~Ls~N~ 549 (768)
T 3rgz_A 541 IWLDLNTNL 549 (768)
T ss_dssp CEEECCSSE
T ss_pred CEEECCCCc
Confidence 999998885
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=4.5e-26 Score=244.51 Aligned_cols=415 Identities=19% Similarity=0.125 Sum_probs=230.1
Q ss_pred CcccceeeccCCCCCchHHHH--HHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccccchhH
Q 008973 3 RPTLHELCLHNCADFSGKLLS--EIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNF 80 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~--~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 80 (547)
.++|++|+|++|. +...... .+ .++++|++|+++++ .++......+...+++|++|+++++... ....
T Consensus 99 l~~L~~L~Ls~n~-l~~~~~~~~~l-~~l~~L~~L~Ls~n------~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~ 168 (768)
T 3rgz_A 99 SASLTSLDLSRNS-LSGPVTTLTSL-GSCSGLKFLNVSSN------TLDFPGKVSGGLKLNSLEVLDLSANSIS--GANV 168 (768)
T ss_dssp CTTCCEEECCSSE-EEEEGGGGGGG-GGCTTCCEEECCSS------EEECCSSCCSCCCCTTCSEEECCSSCCE--EETH
T ss_pred CCCCCEEECCCCc-CCCcCCChHHH-hCCCCCCEEECcCC------ccCCcCCHHHhccCCCCCEEECCCCccC--CcCC
Confidence 5789999999997 6643332 44 59999999999953 2221111122256899999999976542 1111
Q ss_pred HHHH-HHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEec
Q 008973 81 ARVW-ALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDL 159 (547)
Q Consensus 81 ~~l~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 159 (547)
.... ....++|+.|+++........ ....+++|++|+++.+.+...... ...+++|++|++
T Consensus 169 ~~~~~~~~l~~L~~L~Ls~n~l~~~~----------------~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~L 230 (768)
T 3rgz_A 169 VGWVLSDGCGELKHLAISGNKISGDV----------------DVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDI 230 (768)
T ss_dssp HHHHHTTCCTTCCEEECCSSEEESCC----------------BCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEEC
T ss_pred hhhhhhccCCCCCEEECCCCcccccC----------------CcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEEC
Confidence 1111 112388999999875422111 135689999999998877653222 347899999999
Q ss_pred CCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCC---------
Q 008973 160 RDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFC--------- 230 (547)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~--------- 230 (547)
++|. ++......+..+++|++|+++++.-.. .+.. ..+++|++|++++|.
T Consensus 231 s~n~---------l~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~-------~~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 231 SGNK---------LSGDFSRAISTCTELKLLNISSNQFVG-----PIPP-------LPLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp CSSC---------CCSCHHHHTTTCSSCCEEECCSSCCEE-----SCCC-------CCCTTCCEEECCSSEEEESCCCCS
T ss_pred cCCc---------CCCcccHHHhcCCCCCEEECCCCcccC-----ccCc-------cccCCCCEEECcCCccCCccCHHH
Confidence 9983 443344566788888888886532110 0000 024455555555431
Q ss_pred ---------------CCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcC
Q 008973 231 ---------------RVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 295 (547)
Q Consensus 231 ---------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 295 (547)
.+... +...+..+++|+.|++++|......+ ...+..+++|++|+++++. +.......+..+
T Consensus 290 ~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~ip-~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l 366 (768)
T 3rgz_A 290 SGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNE-FSGELPESLTNL 366 (768)
T ss_dssp CTTCTTCSEEECCSSEEEEC-CCGGGGGCTTCCEEECCSSEEEEECC-HHHHTTCTTCCEEECCSSE-EEECCCTTHHHH
T ss_pred HhhcCcCCEEECcCCcCCCc-cchHHhcCCCccEEECCCCcccCcCC-HHHHhcCCCCCEEeCcCCc-cCccccHHHHhh
Confidence 11111 01112334455555554432100000 1112234455555555431 110000111122
Q ss_pred C-CCCEEeCCCCCCCChHHHHhhhC--CCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccC
Q 008973 296 T-GIKVLDLRDCKNLGDEALRAISS--LPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 372 (547)
Q Consensus 296 ~-~L~~L~l~~~~~l~~~~~~~l~~--~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 372 (547)
+ +|+.|++++| .+.......+.. +++|+.|++++|.++......+.. +++|+.|+++++. ++......+.
T Consensus 367 ~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~N~-l~~~~p~~l~--- 439 (768)
T 3rgz_A 367 SASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN--CSELVSLHLSFNY-LSGTIPSSLG--- 439 (768)
T ss_dssp TTTCSEEECCSS-EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG--CTTCCEEECCSSE-EESCCCGGGG---
T ss_pred hcCCcEEEccCC-CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc--CCCCCEEECcCCc-ccCcccHHHh---
Confidence 2 5555555554 333222222332 677888888888666443344444 8889999988864 3321111111
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHH
Q 008973 373 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 452 (547)
Q Consensus 373 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 452 (547)
.+++|+.|++++| .+.......+ ..+++|+.|++++| .++......+. .+++|+.|+|++|. ++...
T Consensus 440 ~l~~L~~L~L~~n-~l~~~~p~~~-~~l~~L~~L~L~~N-~l~~~~p~~l~---------~l~~L~~L~L~~N~-l~~~~ 506 (768)
T 3rgz_A 440 SLSKLRDLKLWLN-MLEGEIPQEL-MYVKTLETLILDFN-DLTGEIPSGLS---------NCTNLNWISLSNNR-LTGEI 506 (768)
T ss_dssp GCTTCCEEECCSS-CCCSCCCGGG-GGCTTCCEEECCSS-CCCSCCCGGGG---------GCTTCCEEECCSSC-CCSCC
T ss_pred cCCCCCEEECCCC-cccCcCCHHH-cCCCCceEEEecCC-cccCcCCHHHh---------cCCCCCEEEccCCc-cCCcC
Confidence 1278999999985 4442211111 25789999999998 45533222222 78899999999997 66443
Q ss_pred HHHhhCCCCCCCcEEEeeCCCCHHHHHHHHhhCCCcEee
Q 008973 453 FRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVA 491 (547)
Q Consensus 453 ~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 491 (547)
...+.. +++|+.|++++|.-...+.......+.++..
T Consensus 507 p~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 507 PKWIGR--LENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp CGGGGG--CTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred ChHHhc--CCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 444544 8999999999996332222222344555543
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=2.4e-23 Score=215.64 Aligned_cols=406 Identities=14% Similarity=0.093 Sum_probs=239.1
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccc-c-chhH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLF-L-RHNF 80 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~-~~~~ 80 (547)
.++|++|+|+++. +.......+ .++++|++|++++ +.++... ...+.++++|++|+++++.... . ...+
T Consensus 49 l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~------n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSSR-INTIEGDAF-YSLGSLEHLDLSD------NHLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp CTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTT------SCCCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred CCcccEEECCCCC-cCccChhhc-cccccCCEEECCC------CccCccC-HHHhccCCCCcEEECCCCcccccchhhhh
Confidence 4678888888885 655433333 4788888888885 3343222 2334668888888887664421 1 1122
Q ss_pred HHHHHHhhcccceeeccCcc-hHhhh-hh-------cCCCcCCCCCCCc--cCCCCCCCccEEEeeccCCChhHHHHHHh
Q 008973 81 ARVWALASEKLTSLEIGYIS-SVMVT-EL-------LSPNVEPHQSPNQ--IRPSILPGIQKLCLSVDYITDAMVGTISQ 149 (547)
Q Consensus 81 ~~l~~~~~~~L~~L~l~~~~-~~~~~-~~-------~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 149 (547)
..+ ++|+.|+++... ....+ .. ....+....+... ..+..+++|++|+++.+.+... ...+..
T Consensus 120 ~~l-----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~ 193 (549)
T 2z81_A 120 PNL-----TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFAD 193 (549)
T ss_dssp TTC-----TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH-HHHHHH
T ss_pred hcc-----CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc-chhhHh
Confidence 222 677777776532 11110 00 0011111122111 1244466777777776555432 223334
Q ss_pred cCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHH---HHcCCCCcEEEE
Q 008973 150 GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLM---ADKCASMESICL 226 (547)
Q Consensus 150 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l---~~~~~~L~~L~l 226 (547)
.+++|++|++++|..... ..........+++|++|++.+ ..+.+.....+ ...+++|+.+++
T Consensus 194 ~l~~L~~L~L~~n~l~~~------~~~~~~~~~~~~~L~~L~l~~---------n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARF------QFSPLPVDEVSSPMKKLAFRG---------SVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp STTTBSEEEEESCBCTTC------CCCCCSSCCCCCCCCEEEEES---------CEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred hcccccEEEccCCccccc------cccccchhhhhhcccceeccc---------cccchhHHHHHHHHhhhhcccccccc
Confidence 678888888888742110 000011112455666666642 12222222222 123445555555
Q ss_pred cCCC-----------------------------CCCHH----HHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCc
Q 008973 227 GGFC-----------------------------RVTDT----GFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSL 273 (547)
Q Consensus 227 ~~~~-----------------------------~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 273 (547)
++|. .+... .+..+....++|+.|+++++. ++..+ ..+...+++|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip-~~~~~~l~~L 336 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVP-CSFSQHLKSL 336 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCC-HHHHHHCTTC
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCC-HHHHhcCccc
Confidence 4432 11110 011223456889999999864 44322 2234567899
Q ss_pred cEEEccCCCCCCHHHHH---HhhcCCCCCEEeCCCCCCCChHHH--HhhhCCCCccEEEecCccCChHhHHHHHHhcCCC
Q 008973 274 THVCLRWCNLLTNHAIK---SLASNTGIKVLDLRDCKNLGDEAL--RAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 348 (547)
Q Consensus 274 ~~L~l~~~~~l~~~~~~---~l~~~~~L~~L~l~~~~~l~~~~~--~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~ 348 (547)
+.|+++++ .+...... .+..+++|+.|++++| .++.... ..+..+++|++|++++|.++... ..+. .+++
T Consensus 337 ~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~--~~~~ 411 (549)
T 2z81_A 337 EFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQ--WPEK 411 (549)
T ss_dssp CEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC-SCCC--CCTT
T ss_pred cEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCCCccCC-hhhc--cccc
Confidence 99999994 56654332 2567899999999999 6766542 45789999999999999877321 1122 4789
Q ss_pred ccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcccc
Q 008973 349 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 428 (547)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 428 (547)
|+.|+++++. ++. +. .+..++|++|++++| .++.. ...+++|+.|++++| .++. +... .
T Consensus 412 L~~L~Ls~N~-l~~-----l~-~~~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N-~l~~--ip~~-~---- 470 (549)
T 2z81_A 412 MRFLNLSSTG-IRV-----VK-TCIPQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRN-KLKT--LPDA-S---- 470 (549)
T ss_dssp CCEEECTTSC-CSC-----CC-TTSCTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSS--CCCG-G----
T ss_pred ccEEECCCCC-ccc-----cc-chhcCCceEEECCCC-Chhhh-----cccCChhcEEECCCC-ccCc--CCCc-c----
Confidence 9999999975 442 11 111268999999995 66532 136899999999999 5652 2221 1
Q ss_pred CccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 429 DDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 429 ~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.+++|+.|+|++|. ++......+.. +++|+.|++++|+
T Consensus 471 ----~l~~L~~L~Ls~N~-l~~~~~~~~~~--l~~L~~L~l~~N~ 508 (549)
T 2z81_A 471 ----LFPVLLVMKISRNQ-LKSVPDGIFDR--LTSLQKIWLHTNP 508 (549)
T ss_dssp ----GCTTCCEEECCSSC-CCCCCTTGGGG--CTTCCEEECCSSC
T ss_pred ----cCccCCEEecCCCc-cCCcCHHHHhc--CcccCEEEecCCC
Confidence 67899999999997 77544444554 8999999999997
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=6.7e-22 Score=192.24 Aligned_cols=282 Identities=19% Similarity=0.236 Sum_probs=195.6
Q ss_pred CCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccc
Q 008973 124 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 203 (547)
Q Consensus 124 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 203 (547)
..+++|++|+++++.+++... ...+++|++|++++|. ++. +..+..+++|++|+++++. .
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~---------i~~--~~~~~~l~~L~~L~l~~n~------i 122 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNK---------ITD--ISALQNLTNLRELYLNEDN------I 122 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC---------CCC--CGGGTTCTTCSEEECTTSC------C
T ss_pred hhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCc---------ccC--chHHcCCCcCCEEECcCCc------c
Confidence 447889999998877766433 4578899999999873 222 3457788899999986421 2
Q ss_pred cccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 008973 204 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 283 (547)
Q Consensus 204 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 283 (547)
..+.. ...+++|+.|++++|..+.... . +..+++|+.|++++|....... ...+++|++|+++++ .
T Consensus 123 ~~~~~------~~~l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n-~ 188 (347)
T 4fmz_A 123 SDISP------LANLTKMYSLNLGANHNLSDLS--P-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYN-Q 188 (347)
T ss_dssp CCCGG------GTTCTTCCEEECTTCTTCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTS-C
T ss_pred cCchh------hccCCceeEEECCCCCCccccc--c-hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCC-c
Confidence 22221 2468889999998875544321 1 5568899999998864322222 456789999999885 3
Q ss_pred CCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHH
Q 008973 284 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 363 (547)
Q Consensus 284 l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~ 363 (547)
+.... .+..+++|+.|+++++ .+..... +..+++|++|++++|.++.... +. .+++|+.|+++++. ++..
T Consensus 189 l~~~~--~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~-l~~~ 258 (347)
T 4fmz_A 189 IEDIS--PLASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIGNNKITDLSP--LA--NLSQLTWLEIGTNQ-ISDI 258 (347)
T ss_dssp CCCCG--GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSC-CCCC
T ss_pred ccccc--cccCCCccceeecccC-CCCCCch--hhcCCcCCEEEccCCccCCCcc--hh--cCCCCCEEECCCCc-cCCC
Confidence 43322 2667899999999888 5554332 6788999999999987766443 33 48899999998874 4432
Q ss_pred HHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecC
Q 008973 364 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 443 (547)
Q Consensus 364 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 443 (547)
..+ ..+++|++|++++| .++... ....+++|+.|++++| .+++.....+. .+++|+.|+++
T Consensus 259 --~~~---~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~l~---------~l~~L~~L~L~ 319 (347)
T 4fmz_A 259 --NAV---KDLTKLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNN-QLGNEDMEVIG---------GLTNLTTLFLS 319 (347)
T ss_dssp --GGG---TTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSS-CCCGGGHHHHH---------TCTTCSEEECC
T ss_pred --hhH---hcCCCcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCC-cCCCcChhHhh---------ccccCCEEEcc
Confidence 111 23389999999985 555331 1236889999999998 67776666665 77899999999
Q ss_pred CCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 444 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 444 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
+|+ ++.... +. .+++|+.|++++|+
T Consensus 320 ~n~-l~~~~~--~~--~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 320 QNH-ITDIRP--LA--SLSKMDSADFANQV 344 (347)
T ss_dssp SSS-CCCCGG--GG--GCTTCSEESSSCC-
T ss_pred CCc-cccccC--hh--hhhccceeehhhhc
Confidence 997 665322 44 38899999998885
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=2.3e-24 Score=226.14 Aligned_cols=314 Identities=14% Similarity=0.084 Sum_probs=153.7
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccc-c-chhH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLF-L-RHNF 80 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~-~~~~ 80 (547)
.++|++|+|+++. +.......+ .++++|++|+++++ .++.... ..+..+++|++|+++++.... . +..+
T Consensus 79 l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~L~~n------~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~ 149 (606)
T 3vq2_A 79 LHHLSNLILTGNP-IQSFSPGSF-SGLTSLENLVAVET------KLASLES-FPIGQLITLKKLNVAHNFIHSCKLPAYF 149 (606)
T ss_dssp CTTCCEEECTTCC-CCCCCTTSS-TTCTTCCEEECTTS------CCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred hhhcCEeECCCCc-ccccChhhc-CCcccCCEEEccCC------ccccccc-cccCCCCCCCEEeCCCCcccceechHhH
Confidence 4688999999886 655433333 58999999999853 2221110 113567888888888665421 1 2333
Q ss_pred HHHHHHhhcccceeeccCcchHh-----hhhh--c-----CCCcCCCCCCCcc-CCCCCCCccEEEeeccCCChhHHHHH
Q 008973 81 ARVWALASEKLTSLEIGYISSVM-----VTEL--L-----SPNVEPHQSPNQI-RPSILPGIQKLCLSVDYITDAMVGTI 147 (547)
Q Consensus 81 ~~l~~~~~~~L~~L~l~~~~~~~-----~~~~--~-----~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l 147 (547)
..+ ++|+.|+++...... +..+ + ...+....+.... ......+|++|+++++.+........
T Consensus 150 ~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 224 (606)
T 3vq2_A 150 SNL-----TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224 (606)
T ss_dssp GTC-----TTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHH
T ss_pred hhc-----CCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHH
Confidence 333 778888777532111 1111 0 1122222222222 11223489999999998887777766
Q ss_pred HhcCCCccEEecCCCCCCCC--cc----------------------ccccchhhhhhhccCCCcceEEcccccccccccc
Q 008973 148 SQGLVSLTHLDLRDAPLIEP--RI----------------------TFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 203 (547)
Q Consensus 148 ~~~~~~L~~L~l~~~~~~~~--~~----------------------~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 203 (547)
...+++|+.+++........ .. ...+.. ....+..+++|++|++.++. .
T Consensus 225 ~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~------~ 297 (606)
T 3vq2_A 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD-DIVKFHCLANVSAMSLAGVS------I 297 (606)
T ss_dssp HHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCG-GGGSCGGGTTCSEEEEESCC------C
T ss_pred hccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccc-cccccccCCCCCEEEecCcc------c
Confidence 67888888776632110000 00 001111 11124456677777765421 1
Q ss_pred cccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 008973 204 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 283 (547)
Q Consensus 204 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 283 (547)
..+. . ...+++|++|++++| .+.. +..+ .+++|+.|+++++..+... ....+++|+.|+++++ .
T Consensus 298 ~~l~--~----l~~~~~L~~L~l~~n-~l~~--lp~~--~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n-~ 361 (606)
T 3vq2_A 298 KYLE--D----VPKHFKWQSLSIIRC-QLKQ--FPTL--DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRN-A 361 (606)
T ss_dssp CCCC--C----CCTTCCCSEEEEESC-CCSS--CCCC--CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSS-C
T ss_pred hhhh--h----ccccccCCEEEcccc-cCcc--cccC--CCCccceeeccCCcCccch----hhccCCCCCEEECcCC-c
Confidence 1111 0 123556666666664 2221 1122 4566666666655332211 1123456666666653 2
Q ss_pred CCHHH--HHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhH-HHHHHhcCCCccEEEeCCC
Q 008973 284 LTNHA--IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGV-SYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 284 l~~~~--~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l-~~l~~~~~~~L~~L~l~~~ 357 (547)
+.... ...+..+++|+.|++++| .+.... ..+..+++|+.|++++|.+..... ..+.. +++|+.|++++|
T Consensus 362 l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~l~~n 434 (606)
T 3vq2_A 362 LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLS--LEKLLYLDISYT 434 (606)
T ss_dssp EEEEEECCHHHHCCSCCCEEECCSC-SEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTT--CTTCCEEECTTS
T ss_pred cCCCcchhhhhccCCcccEeECCCC-ccccch-hhccCCCCCCeeECCCCccCCccChhhhhc--cccCCEEECcCC
Confidence 22110 122334555666666555 233221 334455555555555554433222 12222 555555555554
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3.1e-24 Score=225.06 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=85.8
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeeccccccc-ccchhHH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISL-FLRHNFA 81 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~ 81 (547)
.++|++|+|+++. +.......+ .++++|++|++++ +.++... ...+.++++|++|+++++... ..+..+.
T Consensus 31 ~~~l~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~------n~l~~i~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 31 PSSTKNIDLSFNP-LKILKSYSF-SNFSELQWLDLSR------CEIETIE-DKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp CTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTT------CCCCEEC-TTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCCcCEEECCCCC-cCEeChhhc-cCCccCcEEeCCC------CcccccC-HHHhhchhhcCEeECCCCcccccChhhcC
Confidence 3679999999986 655443334 5899999999985 3333221 123467899999999876542 2233344
Q ss_pred HHHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCC
Q 008973 82 RVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRD 161 (547)
Q Consensus 82 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 161 (547)
.+ ++|++|+++.......... .+..+++|++|+++.+.+....+......+++|++|++++
T Consensus 102 ~l-----~~L~~L~L~~n~l~~~~~~--------------~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 102 GL-----TSLENLVAVETKLASLESF--------------PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp TC-----TTCCEEECTTSCCCCSSSS--------------CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred Cc-----ccCCEEEccCCcccccccc--------------ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 34 7888888886543221110 1556788888888877776433333334788888888888
Q ss_pred CC
Q 008973 162 AP 163 (547)
Q Consensus 162 ~~ 163 (547)
|.
T Consensus 163 n~ 164 (606)
T 3vq2_A 163 NY 164 (606)
T ss_dssp SC
T ss_pred Cc
Confidence 74
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=6.7e-22 Score=199.98 Aligned_cols=278 Identities=23% Similarity=0.266 Sum_probs=178.3
Q ss_pred CCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccc
Q 008973 124 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 203 (547)
Q Consensus 124 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 203 (547)
..+++|++|+++++.+.+... ...+++|++|++++|. ++. +..+..+++|++|++.. ..
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~---------l~~--~~~~~~l~~L~~L~l~~-------~~ 167 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNT---------ISD--ISALSGLTSLQQLSFGN-------QV 167 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEE---------ECC--CGGGTTCTTCSEEEEEE-------SC
T ss_pred cCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCc---------cCC--ChhhccCCcccEeecCC-------cc
Confidence 446788888888776665332 3467888888888762 222 23466778888888742 11
Q ss_pred cccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 008973 204 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 283 (547)
Q Consensus 204 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 283 (547)
..+.. ...+++|+.|+++++ .+.... .+..+++|+.|++++|.. +.... ...+++|++|+++++ .
T Consensus 168 ~~~~~------~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l-~~~~~---~~~l~~L~~L~l~~n-~ 232 (466)
T 1o6v_A 168 TDLKP------LANLTTLERLDISSN-KVSDIS---VLAKLTNLESLIATNNQI-SDITP---LGILTNLDELSLNGN-Q 232 (466)
T ss_dssp CCCGG------GTTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSCC-CCCGG---GGGCTTCCEEECCSS-C
T ss_pred cCchh------hccCCCCCEEECcCC-cCCCCh---hhccCCCCCEEEecCCcc-ccccc---ccccCCCCEEECCCC-C
Confidence 11111 245778888888875 343321 245678888888887643 22211 345678888888885 3
Q ss_pred CCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHH
Q 008973 284 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 363 (547)
Q Consensus 284 l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~ 363 (547)
+... ..+..+++|+.|++++| .+.... .+..+++|+.|++++|.++.... +. .+++|+.|++++|. ++..
T Consensus 233 l~~~--~~l~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~L~~n~-l~~~ 302 (466)
T 1o6v_A 233 LKDI--GTLASLTNLTDLDLANN-QISNLA--PLSGLTKLTELKLGANQISNISP--LA--GLTALTNLELNENQ-LEDI 302 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSS-CCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSC-CSCC
T ss_pred cccc--hhhhcCCCCCEEECCCC-ccccch--hhhcCCCCCEEECCCCccCcccc--cc--CCCccCeEEcCCCc-ccCc
Confidence 4332 34667888888888887 554432 36788888899888887765432 33 38888888888864 4321
Q ss_pred HHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecC
Q 008973 364 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 443 (547)
Q Consensus 364 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 443 (547)
.. + . .+++|+.|++++| .+++... ...+++|+.|++++| .+++. ..+. .+++|+.|+++
T Consensus 303 ~~--~-~--~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~l~---------~l~~L~~L~l~ 361 (466)
T 1o6v_A 303 SP--I-S--NLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDV--SSLA---------NLTNINWLSAG 361 (466)
T ss_dssp GG--G-G--GCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCC--GGGT---------TCTTCCEEECC
T ss_pred hh--h-c--CCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCc--hhhc---------cCCCCCEEeCC
Confidence 11 1 1 2278899999885 4543221 236888999999888 45543 1222 77889999998
Q ss_pred CCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 444 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 444 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
+|. ++... .+. .+++|+.|++.+|.
T Consensus 362 ~n~-l~~~~--~~~--~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 362 HNQ-ISDLT--PLA--NLTRITQLGLNDQA 386 (466)
T ss_dssp SSC-CCBCG--GGT--TCTTCCEEECCCEE
T ss_pred CCc-cCccc--hhh--cCCCCCEEeccCCc
Confidence 887 65432 243 48889999888885
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=2.3e-24 Score=224.46 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=77.7
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccc-cccchhHH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDIS-LFLRHNFA 81 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~~ 81 (547)
.++++.|+++++. ++......+ .++++|++|+++++ .++... ...+.++++|++|+++++.. ......+.
T Consensus 27 ~~~l~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n------~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 27 PFSTKNLDLSFNP-LRHLGSYSF-FSFPELQVLDLSRC------EIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp CSSCCEEECCSCC-CCEECTTTT-TTCSSCCEEECTTC------CCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cccccEEEccCCc-cCccChhHh-hCCCCceEEECCCC------cCCccC-cccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 3578899999886 655433334 58999999999853 333211 12345688999999987654 22223333
Q ss_pred HHHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCC
Q 008973 82 RVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRD 161 (547)
Q Consensus 82 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 161 (547)
.+ ++|++|+++.......... .+..+++|++|+++.+.+....+......+++|++|++++
T Consensus 98 ~l-----~~L~~L~L~~n~l~~l~~~--------------~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 98 GL-----SSLQKLVAVETNLASLENF--------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp TC-----TTCCEEECTTSCCCCSTTC--------------SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred Cc-----cccccccccccccccCCCc--------------cccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence 33 7888888876432221110 1345667777777666554322212223566777777766
Q ss_pred CC
Q 008973 162 AP 163 (547)
Q Consensus 162 ~~ 163 (547)
|.
T Consensus 159 n~ 160 (570)
T 2z63_A 159 NK 160 (570)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.6e-22 Score=207.90 Aligned_cols=400 Identities=14% Similarity=0.110 Sum_probs=234.6
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccccchhHHH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFAR 82 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 82 (547)
+++|++|+|+++. +.......+ .++++|++|++++ +.++... ...+.++++|++|+|+++....-+..
T Consensus 20 ~~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~------n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~--- 87 (520)
T 2z7x_B 20 SQKTTILNISQNY-ISELWTSDI-LSLSKLRILIISH------NRIQYLD-ISVFKFNQELEYLDLSHNKLVKISCH--- 87 (520)
T ss_dssp CTTCSEEECCSSC-CCCCCHHHH-TTCTTCCEEECCS------SCCCEEE-GGGGTTCTTCCEEECCSSCCCEEECC---
T ss_pred cccccEEECCCCc-ccccChhhc-cccccccEEecCC------CccCCcC-hHHhhcccCCCEEecCCCceeecCcc---
Confidence 3789999999997 766554455 5999999999995 3444221 23456799999999997755311111
Q ss_pred HHHHhhcccceeeccCcchHh--hhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCc--cEEe
Q 008973 83 VWALASEKLTSLEIGYISSVM--VTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSL--THLD 158 (547)
Q Consensus 83 l~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L--~~L~ 158 (547)
..++|++|+++...... .+.. +..+++|++|+++++.+....+ ..+++| ++|+
T Consensus 88 ----~l~~L~~L~L~~N~l~~~~~p~~---------------~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~ 144 (520)
T 2z7x_B 88 ----PTVNLKHLDLSFNAFDALPICKE---------------FGNMSQLKFLGLSTTHLEKSSV----LPIAHLNISKVL 144 (520)
T ss_dssp ----CCCCCSEEECCSSCCSSCCCCGG---------------GGGCTTCCEEEEEESSCCGGGG----GGGTTSCEEEEE
T ss_pred ----ccCCccEEeccCCccccccchhh---------------hccCCcceEEEecCcccchhhc----cccccceeeEEE
Confidence 33889999998754321 1122 5568999999999998887443 356777 9999
Q ss_pred cCCCCC--CCCccccccch------------------hhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcC
Q 008973 159 LRDAPL--IEPRITFDLTN------------------SGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKC 218 (547)
Q Consensus 159 l~~~~~--~~~~~~~~~~~------------------~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (547)
+++|.. ....+ ..+.. ..-..+..+++|+.|+++++... ..+..+.. .+. -...+
T Consensus 145 l~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~-~~~-~l~~l 219 (520)
T 2z7x_B 145 LVLGETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED--NKCSYFLS-ILA-KLQTN 219 (520)
T ss_dssp EEECTTTTSSCCT-TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST--TTTHHHHH-HHH-GGGGC
T ss_pred eeccccccccccc-ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccc--cccceeec-chh-hhccc
Confidence 998754 11100 00000 00001224566666666431100 00000110 111 11335
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHH--cCCCCcEEEecCCC-----------------------------C-CCHHHHHHH
Q 008973 219 ASMESICLGGFCRVTDTGFKTILH--SCSNLYKLRVSHGT-----------------------------Q-LTDLVFHDI 266 (547)
Q Consensus 219 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~-----------------------------~-~~~~~~~~~ 266 (547)
++|+.|+++++ .+....+..+.. .+++|+.|++++|. . +....+..+
T Consensus 220 ~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~ 298 (520)
T 2z7x_B 220 PKLSNLTLNNI-ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298 (520)
T ss_dssp TTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHH
T ss_pred cchhhcccccc-ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcc
Confidence 56666666653 444433333322 13455555555432 1 111122222
Q ss_pred HhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhH--HHHHHh
Q 008973 267 SATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGV--SYLRLT 344 (547)
Q Consensus 267 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l--~~l~~~ 344 (547)
... ++|+.|+++++. +.... ....+++|++|++++| .+.......+..+++|+.|++++|.++.... ..+.
T Consensus 299 ~~~-~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-- 371 (520)
T 2z7x_B 299 FSN-MNIKNFTVSGTR-MVHML--CPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-- 371 (520)
T ss_dssp HHT-CCCSEEEEESSC-CCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT--
T ss_pred ccc-CceeEEEcCCCc-ccccc--chhhCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCccccchHHHh--
Confidence 221 367777777743 22211 1146788999999988 6776556667788999999999998876322 2333
Q ss_pred cCCCccEEEeCCCCCCcH-HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcC-CCCcEEeccCCCCCCHHHHHHH
Q 008973 345 VITSLVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR-VPISELRVRQCPLIGDTSVIAL 422 (547)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~l 422 (547)
.+++|+.|+++++. ++. .... .. ..+++|++|+++++ .++..... .+ ++|+.|++++| .++. +
T Consensus 372 ~l~~L~~L~Ls~N~-l~~~l~~~-~~--~~l~~L~~L~Ls~N-~l~~~~~~----~l~~~L~~L~Ls~N-~l~~-----i 436 (520)
T 2z7x_B 372 QMKSLQQLDISQNS-VSYDEKKG-DC--SWTKSLLSLNMSSN-ILTDTIFR----CLPPRIKVLDLHSN-KIKS-----I 436 (520)
T ss_dssp TCTTCCEEECCSSC-CBCCGGGC-SC--CCCTTCCEEECCSS-CCCGGGGG----SCCTTCCEEECCSS-CCCC-----C
T ss_pred hCCCCCEEECCCCc-CCcccccc-hh--ccCccCCEEECcCC-CCCcchhh----hhcccCCEEECCCC-cccc-----c
Confidence 48899999998865 442 1111 11 12378999999984 66543322 33 68999999988 5652 1
Q ss_pred HhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 423 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 423 ~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
..... .+++|+.|++++|. ++......+. .+++|+.|++++|+
T Consensus 437 p~~~~-----~l~~L~~L~L~~N~-l~~l~~~~~~--~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 437 PKQVV-----KLEALQELNVASNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 479 (520)
T ss_dssp CGGGG-----GCTTCCEEECCSSC-CCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred chhhh-----cCCCCCEEECCCCc-CCccCHHHhc--cCCcccEEECcCCC
Confidence 11111 67889999999986 7643222233 48899999999886
No 21
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=6.2e-20 Score=177.48 Aligned_cols=287 Identities=16% Similarity=0.130 Sum_probs=190.3
Q ss_pred CCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccccchhHHHHHHHhhcccceee
Q 008973 16 DFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLE 95 (547)
Q Consensus 16 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~L~~L~ 95 (547)
.++...+..|++.++.-..+.+. .....-..+......++.++++.+.. .. ..+......+++.++
T Consensus 11 ~LP~eil~~If~~L~~~d~~~~~---------~vc~~W~~~~~~~~~~~~l~l~~~~~--~~---~~~~~~~~~~l~~L~ 76 (336)
T 2ast_B 11 SLPDELLLGIFSCLCLPELLKVS---------GVCKRWYRLASDESLWQTLDLTGKNL--HP---DVTGRLLSQGVIAFR 76 (336)
T ss_dssp SSCHHHHHHHHTTSCHHHHHHTT---------SSCHHHHHHHTCSTTSSEEECTTCBC--CH---HHHHHHHHTTCSEEE
T ss_pred hCCHHHHHHHHHhCCHHHHHHHH---------HHHHHHHHHhcCchhheeeccccccC--CH---HHHHhhhhccceEEE
Confidence 35577777888665433222221 11122333333334578888875432 22 222233347788888
Q ss_pred ccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccch
Q 008973 96 IGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTN 175 (547)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 175 (547)
++......... ....+++|++|+++++.+++..+..+...+++|++|++++| .+++
T Consensus 77 l~~n~l~~~~~---------------~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~---------~l~~ 132 (336)
T 2ast_B 77 CPRSFMDQPLA---------------EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL---------RLSD 132 (336)
T ss_dssp CTTCEECSCCC---------------SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC---------BCCH
T ss_pred cCCccccccch---------------hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc---------ccCH
Confidence 77543211100 03347899999999888888777777778999999999987 4565
Q ss_pred hhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCC-CCcEEEecC
Q 008973 176 SGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCS-NLYKLRVSH 254 (547)
Q Consensus 176 ~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~ 254 (547)
.....++.+++|++|+++ ++..+++.++......+++|++|++++|..+++.++..++..++ +|++|++++
T Consensus 133 ~~~~~l~~~~~L~~L~L~--------~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 133 PIVNTLAKNSNLVRLNLS--------GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp HHHHHHTTCTTCSEEECT--------TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHhcCCCCCEEECC--------CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 566677778888888884 34456666666666778888888888866777776777777788 888888887
Q ss_pred CC-CCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccC
Q 008973 255 GT-QLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 333 (547)
Q Consensus 255 ~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l 333 (547)
|. .+++..+......+++|++|++++|..+++..+..+..+++|+.|++++|..+.+.++..++.+++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 65 577666666667777888888887655666666666777788888887776666666666677777777777777 6
Q ss_pred ChHhHHHHHHhcCCCcc
Q 008973 334 SDVGVSYLRLTVITSLV 350 (547)
Q Consensus 334 ~~~~l~~l~~~~~~~L~ 350 (547)
++..+..+.. .++.|+
T Consensus 284 ~~~~~~~l~~-~l~~L~ 299 (336)
T 2ast_B 284 PDGTLQLLKE-ALPHLQ 299 (336)
T ss_dssp CTTCHHHHHH-HSTTSE
T ss_pred CHHHHHHHHh-hCcceE
Confidence 6666665554 344444
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=6.8e-23 Score=217.82 Aligned_cols=205 Identities=15% Similarity=0.093 Sum_probs=119.3
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCH-HHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCc
Q 008973 245 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN-HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 323 (547)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 323 (547)
++|+.|++++|. ++.... ..+..+++|+.|+++++ .+.. .....+..+++|+.|++++| .+.......+..+++|
T Consensus 381 ~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L 456 (680)
T 1ziw_A 381 SPLHILNLTKNK-ISKIES-DAFSWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSL 456 (680)
T ss_dssp SCCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCTTC
T ss_pred CcCceEECCCCC-CCeECh-hhhhCCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCC-CcceeChhhhhcCccc
Confidence 355666665542 221111 12345678899999884 3321 12234567888888888887 4555445566678888
Q ss_pred cEEEecCccCChHhH--HHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHH-------
Q 008973 324 KILLLDGSDISDVGV--SYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGIL------- 394 (547)
Q Consensus 324 ~~L~l~~~~l~~~~l--~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~------- 394 (547)
+.|++++|.+...+. ..+. .+++|+.|+++++. ++......+ . .+++|++|++++ +.++.....
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~--~l~~L~~L~Ls~N~-l~~i~~~~~-~--~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~ 529 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQ--PLRNLTILDLSNNN-IANINDDML-E--GLEKLEILDLQH-NNLARLWKHANPGGPI 529 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTT--TCTTCCEEECCSSC-CCCCCTTTT-T--TCTTCCEEECCS-SCCGGGGSTTSTTSCC
T ss_pred ccchhccccccccccCCcccc--cCCCCCEEECCCCC-CCcCChhhh-c--cccccCEEeCCC-CCccccchhhccCCcc
Confidence 888888876543211 1222 37788888888754 432111111 1 227888888888 455422100
Q ss_pred HHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 395 TLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 395 ~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.....+++|+.|++++| .++......+. .+++|+.|++++|. ++......+. .+++|+.|++++|.
T Consensus 530 ~~~~~l~~L~~L~L~~N-~l~~i~~~~~~---------~l~~L~~L~Ls~N~-l~~l~~~~~~--~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 530 YFLKGLSHLHILNLESN-GFDEIPVEVFK---------DLFELKIIDLGLNN-LNTLPASVFN--NQVSLKSLNLQKNL 595 (680)
T ss_dssp CTTTTCTTCCEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSC-CCCCCTTTTT--TCTTCCEEECTTSC
T ss_pred hhhcCCCCCCEEECCCC-CCCCCCHHHcc---------cccCcceeECCCCC-CCcCCHhHhC--CCCCCCEEECCCCc
Confidence 01235778888888887 45522211111 67788888888876 6643333333 37888888888885
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=2e-23 Score=218.77 Aligned_cols=300 Identities=15% Similarity=0.148 Sum_probs=181.8
Q ss_pred CCCCCCccEEEeeccC-CCh-hHHHHHHh-----cCCCccEEecCCCCCCCCccccccchhhhh--hhccCCCcceEEcc
Q 008973 123 PSILPGIQKLCLSVDY-ITD-AMVGTISQ-----GLVSLTHLDLRDAPLIEPRITFDLTNSGLQ--QINQHGKLKHLSLI 193 (547)
Q Consensus 123 ~~~~~~L~~L~l~~~~-~~~-~~~~~l~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~--~l~~~~~L~~L~l~ 193 (547)
+..+++|++|+++.+. ++. .....+.. .+++|++|++++|. ++. .-. .+..+++|++|+++
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~---------l~~-ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN---------LKT-FPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC---------CSS-CCCHHHHTTCTTCCEEECC
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc---------CCc-cCchhhhccCCCCCEEeCc
Confidence 5568889999998887 776 33333332 24889999998873 221 111 46778889999886
Q ss_pred ccccccccccc-ccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCC-CcEEEecCCCCCCHHHHHHHHhc--
Q 008973 194 RSQEFLITYFR-RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSN-LYKLRVSHGTQLTDLVFHDISAT-- 269 (547)
Q Consensus 194 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~-- 269 (547)
++. .. .++ .+ ..+++|+.|+++++ .+. .+...+..+++ |+.|+++++. ++. +......
T Consensus 339 ~N~------l~g~ip--~~----~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~-l~~--lp~~~~~~~ 400 (636)
T 4eco_A 339 YNQ------LEGKLP--AF----GSEIKLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAHNK-LKY--IPNIFDAKS 400 (636)
T ss_dssp SCC------CEEECC--CC----EEEEEESEEECCSS-EEE--ECCTTSEEECTTCCEEECCSSC-CSS--CCSCCCTTC
T ss_pred CCc------Cccchh--hh----CCCCCCCEEECCCC-ccc--cccHhhhhhcccCcEEEccCCc-Ccc--cchhhhhcc
Confidence 421 22 222 11 34678889998885 444 12222455677 9999998854 332 1111122
Q ss_pred CCCccEEEccCCCCCCHHHHHHhh-------cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHH
Q 008973 270 SLSLTHVCLRWCNLLTNHAIKSLA-------SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLR 342 (547)
Q Consensus 270 ~~~L~~L~l~~~~~l~~~~~~~l~-------~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~ 342 (547)
+++|+.|+++++ .+.......+. .+++|+.|++++| .+.......+..+++|+.|++++|.++......+.
T Consensus 401 l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 478 (636)
T 4eco_A 401 VSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478 (636)
T ss_dssp SSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred cCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence 347899999884 44332222333 5678999999888 66654444556789999999999877632222111
Q ss_pred H-----hcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCC-----
Q 008973 343 L-----TVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP----- 412 (547)
Q Consensus 343 ~-----~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~----- 412 (547)
. ..+++|+.|+++++. ++. +........+++|+.|++++ +.++. +..-...+++|+.|++++|.
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~~~l~~L~~L~Ls~-N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNK-LTK--LSDDFRATTLPYLVGIDLSY-NSFSK--FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSC-CCB--CCGGGSTTTCTTCCEEECCS-SCCSS--CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred cccccccccCCccEEECcCCc-CCc--cChhhhhccCCCcCEEECCC-CCCCC--cChhhhcCCCCCEEECCCCcccccC
Confidence 1 012289999998864 541 21111101338899999998 46653 21112258899999996542
Q ss_pred CCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 413 LIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 413 ~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.+.......+. .+++|+.|+|++|. ++. +....+++|+.|++++|+
T Consensus 553 ~l~~~~p~~l~---------~l~~L~~L~Ls~N~-l~~-----ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 553 RTLREWPEGIT---------LCPSLTQLQIGSND-IRK-----VNEKITPNISVLDIKDNP 598 (636)
T ss_dssp BCCCCCCTTGG---------GCSSCCEEECCSSC-CCB-----CCSCCCTTCCEEECCSCT
T ss_pred cccccChHHHh---------cCCCCCEEECCCCc-CCc-----cCHhHhCcCCEEECcCCC
Confidence 22211111222 67889999999987 532 222235789999999986
No 24
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=2.3e-19 Score=173.53 Aligned_cols=251 Identities=18% Similarity=0.258 Sum_probs=186.5
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHH-HHhhcCCCC
Q 008973 220 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAI-KSLASNTGI 298 (547)
Q Consensus 220 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~~~~L 298 (547)
.++.++++++ .+....+..+. .++++.|+++++. ++..... ...+++|++|++++| .+....+ ..+..+++|
T Consensus 48 ~~~~l~l~~~-~~~~~~~~~~~--~~~l~~L~l~~n~-l~~~~~~--~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGK-NLHPDVTGRLL--SQGVIAFRCPRSF-MDQPLAE--HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTC-BCCHHHHHHHH--HTTCSEEECTTCE-ECSCCCS--CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCC
T ss_pred hheeeccccc-cCCHHHHHhhh--hccceEEEcCCcc-ccccchh--hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCC
Confidence 4777777773 55544333321 1678888877642 2211111 224578899999885 4665533 346678899
Q ss_pred CEEeCCCCCCCChHHHHhhhCCCCccEEEecCc-cCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCC-C
Q 008973 299 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKL-Q 376 (547)
Q Consensus 299 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~-~ 376 (547)
++|++++| .+++.....++.+++|++|++++| .+++.++..+.. .+++|++|++++|..+++.++......+ + +
T Consensus 121 ~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l--~~~ 196 (336)
T 2ast_B 121 QNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHV--SET 196 (336)
T ss_dssp SEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHS--CTT
T ss_pred CEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhc--ccC
Confidence 99999988 688777788888999999999998 788777766554 5899999999998668877766655554 7 9
Q ss_pred ccEEecCCCC-CCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHH
Q 008973 377 LQELDLSNLP-HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 455 (547)
Q Consensus 377 L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 455 (547)
|++|++++|. .+++..+......+++|+.|++++|..+++.+...+. .+++|+.|++++|..+++.++..
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---------QLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG---------GCTTCCEEECTTCTTCCGGGGGG
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh---------CCCCCCEeeCCCCCCCCHHHHHH
Confidence 9999999975 6887777777778999999999999658877776655 67899999999997788877766
Q ss_pred hhCCCCCCCcEEEeeCCCCHHHHHHHHhhCCCcEeec
Q 008973 456 LKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVAC 492 (547)
Q Consensus 456 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 492 (547)
+.. +|+|+.|++++|.....+..+....|.+++..
T Consensus 268 l~~--~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~ 302 (336)
T 2ast_B 268 LGE--IPTLKTLQVFGIVPDGTLQLLKEALPHLQINC 302 (336)
T ss_dssp GGG--CTTCCEEECTTSSCTTCHHHHHHHSTTSEESC
T ss_pred Hhc--CCCCCEEeccCccCHHHHHHHHhhCcceEEec
Confidence 765 99999999999976667777877888888654
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=1.5e-22 Score=215.28 Aligned_cols=315 Identities=19% Similarity=0.139 Sum_probs=161.2
Q ss_pred cccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeeccccccc-ccchhHHH
Q 008973 4 PTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISL-FLRHNFAR 82 (547)
Q Consensus 4 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~ 82 (547)
+++++|+|+++. +....... +.++++|++|++++ +.++... ...+.++++|++|+++++... +....+..
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~------n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPAAN-FTRYSQLTSLDVGF------NTISKLE-PELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSSC-CCCCCGGG-GGGGTTCSEEECCS------SCCCCCC-TTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCCC-CCCcCHHH-HhCCCcCcEEECCC------CccCccC-HHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 578889999885 55533323 35888999999985 2333221 233456888999988866432 22222333
Q ss_pred HHHHhhcccceeeccCcchHhhh-hhc-------CCCcCCCCCCCcc--CCCCCCCccEEEeeccCCChhHHHHHHh-cC
Q 008973 83 VWALASEKLTSLEIGYISSVMVT-ELL-------SPNVEPHQSPNQI--RPSILPGIQKLCLSVDYITDAMVGTISQ-GL 151 (547)
Q Consensus 83 l~~~~~~~L~~L~l~~~~~~~~~-~~~-------~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~ 151 (547)
+ .+|+.|+++.......+ ..+ ...+....+.... .+..+++|++|+++.+.++......+.. .+
T Consensus 96 l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 96 C-----TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp C-----TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred C-----CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 3 77888888754322111 010 0111111111111 1233555555555555444332222211 33
Q ss_pred CCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHH--HcCCCCcEEEEcCC
Q 008973 152 VSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMA--DKCASMESICLGGF 229 (547)
Q Consensus 152 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~ 229 (547)
++|++|++++|. ++......+..+++|+.|++.+. .+.......+. -..++|+.|+++++
T Consensus 171 ~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~l~~~---------~l~~~~~~~~~~~l~~~~L~~L~L~~n 232 (680)
T 1ziw_A 171 SSLKKLELSSNQ---------IKEFSPGCFHAIGRLFGLFLNNV---------QLGPSLTEKLCLELANTSIRNLSLSNS 232 (680)
T ss_dssp CEESEEECTTCC---------CCCBCTTGGGGSSEECEEECTTC---------CCHHHHHHHHHHHHTTSCCCEEECTTS
T ss_pred ccccEEECCCCc---------ccccChhhhhhhhhhhhhhcccc---------ccChhhHHHHHHHhhhccccEEEccCC
Confidence 555555555542 11111223344555566655321 12222222221 13478888888875
Q ss_pred CCCCHHHHHHHHHcC--CCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCC
Q 008973 230 CRVTDTGFKTILHSC--SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCK 307 (547)
Q Consensus 230 ~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 307 (547)
.+....... +..+ ++|+.|++++|. ++.... ..+..+++|+.|+++++ .+.......+..+++|+.|+++++.
T Consensus 233 -~l~~~~~~~-~~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 233 -QLSTTSNTT-FLGLKWTNLTMLDLSYNN-LNVVGN-DSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp -CCCEECTTT-TGGGGGSCCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCB
T ss_pred -cccccChhH-hhccCcCCCCEEECCCCC-cCccCc-ccccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchh
Confidence 443321111 2233 458899988753 332211 12345688999999884 4443333445677788888887642
Q ss_pred CCChH--------HHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCC
Q 008973 308 NLGDE--------ALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 308 ~l~~~--------~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 357 (547)
.-... ....+..+++|++|++++|.++......+.. +++|+.|+++++
T Consensus 308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n 363 (680)
T 1ziw_A 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG--LINLKYLSLSNS 363 (680)
T ss_dssp CCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT--CTTCCEEECTTC
T ss_pred hhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcc--ccCCcEEECCCC
Confidence 11110 1113456778888888877666543333333 677777777664
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=8.1e-22 Score=199.22 Aligned_cols=183 Identities=16% Similarity=0.124 Sum_probs=110.4
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHh--cCCCccEEEccCCCCCCH---------HHHHHhh--cCCCCCEEeCCCCCCCC
Q 008973 244 CSNLYKLRVSHGTQLTDLVFHDISA--TSLSLTHVCLRWCNLLTN---------HAIKSLA--SNTGIKVLDLRDCKNLG 310 (547)
Q Consensus 244 ~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~---------~~~~~l~--~~~~L~~L~l~~~~~l~ 310 (547)
+++|+.|++++| .++......+.. ..++|+.|+++++..... .....+. ..++|+.|++++| .+.
T Consensus 211 ~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~ 288 (455)
T 3v47_A 211 NTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIF 288 (455)
T ss_dssp TCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CCC
T ss_pred cceeeeEecCCC-cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc-ccc
Confidence 356666666664 344433333332 125666666665421110 0000011 3478888888887 666
Q ss_pred hHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCH
Q 008973 311 DEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSD 390 (547)
Q Consensus 311 ~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~ 390 (547)
......+..+++|++|++++|.++......+.. +++|+.|+++++. ++......+ . .+++|++|+++++ .++.
T Consensus 289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~N~-l~~~~~~~~-~--~l~~L~~L~Ls~N-~l~~ 361 (455)
T 3v47_A 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG--LTHLLKLNLSQNF-LGSIDSRMF-E--NLDKLEVLDLSYN-HIRA 361 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSC-CCEECGGGG-T--TCTTCCEEECCSS-CCCE
T ss_pred ccchhhcccCCCCCEEECCCCcccccChhHhcC--cccCCEEECCCCc-cCCcChhHh-c--CcccCCEEECCCC-cccc
Confidence 655566778888999999888877654444444 7889999988864 442211111 1 2278999999984 5653
Q ss_pred HHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCC
Q 008973 391 NGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 391 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
.....+ ..+++|+.|++++| .++......+. .+++|+.|+|++|+
T Consensus 362 ~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 362 LGDQSF-LGLPNLKELALDTN-QLKSVPDGIFD---------RLTSLQKIWLHTNP 406 (455)
T ss_dssp ECTTTT-TTCTTCCEEECCSS-CCSCCCTTTTT---------TCTTCCEEECCSSC
T ss_pred cChhhc-cccccccEEECCCC-ccccCCHhHhc---------cCCcccEEEccCCC
Confidence 322222 25789999999988 56543222122 77889999999987
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=1.4e-20 Score=182.82 Aligned_cols=281 Identities=20% Similarity=0.218 Sum_probs=206.9
Q ss_pred CCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccccccc
Q 008973 125 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 204 (547)
Q Consensus 125 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 204 (547)
.+++|++|+++++.+.+. .. ...+++|++|++++|. ++. +..+..+++|++|+++++. ..
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~-~~~~~~L~~L~l~~n~---------i~~--~~~~~~l~~L~~L~L~~n~------i~ 101 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QG-IEYLTNLEYLNLNGNQ---------ITD--ISPLSNLVKLTNLYIGTNK------IT 101 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TT-GGGCTTCCEEECCSSC---------CCC--CGGGTTCTTCCEEECCSSC------CC
T ss_pred hcccccEEEEeCCccccc--hh-hhhcCCccEEEccCCc---------ccc--chhhhcCCcCCEEEccCCc------cc
Confidence 478999999998777653 22 3479999999999983 332 2227789999999997531 22
Q ss_pred ccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCC
Q 008973 205 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 284 (547)
Q Consensus 205 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 284 (547)
.+.. ...+++|++|+++++ .+..... +..+++|+.|++++|..+..... ...+++|++|+++++..
T Consensus 102 ~~~~------~~~l~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~- 167 (347)
T 4fmz_A 102 DISA------LQNLTNLRELYLNED-NISDISP---LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKV- 167 (347)
T ss_dssp CCGG------GTTCTTCSEEECTTS-CCCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCC-
T ss_pred CchH------HcCCCcCCEEECcCC-cccCchh---hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCc-
Confidence 2211 256899999999996 5544322 56799999999999866553322 56778999999999643
Q ss_pred CHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHH
Q 008973 285 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 364 (547)
Q Consensus 285 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~ 364 (547)
.... .+..+++|+.|++++| .+.... .+..+++|+.|++++|.++.... +. .+++|+.|++++|. ++...
T Consensus 168 ~~~~--~~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~--~~~~L~~L~l~~n~-l~~~~ 237 (347)
T 4fmz_A 168 KDVT--PIANLTDLYSLSLNYN-QIEDIS--PLASLTSLHYFTAYVNQITDITP--VA--NMTRLNSLKIGNNK-ITDLS 237 (347)
T ss_dssp CCCG--GGGGCTTCSEEECTTS-CCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEECCSSC-CCCCG
T ss_pred CCch--hhccCCCCCEEEccCC-cccccc--cccCCCccceeecccCCCCCCch--hh--cCCcCCEEEccCCc-cCCCc
Confidence 3222 2678999999999998 565533 37789999999999998776543 34 48999999999975 44321
Q ss_pred HHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCC
Q 008973 365 ISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 444 (547)
Q Consensus 365 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 444 (547)
. + . .+++|++|++++| .++.. .. ...+++|+.|++++| .+++.. .+. .+++|+.|++++
T Consensus 238 ~--~-~--~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~l~~n-~l~~~~--~~~---------~l~~L~~L~L~~ 296 (347)
T 4fmz_A 238 P--L-A--NLSQLTWLEIGTN-QISDI--NA-VKDLTKLKMLNVGSN-QISDIS--VLN---------NLSQLNSLFLNN 296 (347)
T ss_dssp G--G-T--TCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCCG--GGG---------GCTTCSEEECCS
T ss_pred c--h-h--cCCCCCEEECCCC-ccCCC--hh-HhcCCCcCEEEccCC-ccCCCh--hhc---------CCCCCCEEECcC
Confidence 1 2 2 2389999999995 55532 11 236899999999999 566542 222 789999999999
Q ss_pred CCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 445 CGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 445 ~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
|. ++......+.. +|+|+.|++++|.
T Consensus 297 n~-l~~~~~~~l~~--l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 297 NQ-LGNEDMEVIGG--LTNLTTLFLSQNH 322 (347)
T ss_dssp SC-CCGGGHHHHHT--CTTCSEEECCSSS
T ss_pred Cc-CCCcChhHhhc--cccCCEEEccCCc
Confidence 97 88777777776 9999999999997
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=4.8e-23 Score=223.33 Aligned_cols=412 Identities=17% Similarity=0.082 Sum_probs=204.0
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeeccccccc-ccchhHH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISL-FLRHNFA 81 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~ 81 (547)
.++|++|+|+++. ++......+ .++++|++|+++++ ..+.... ...+.++++|++|+|+++... ..+..+.
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~~~-~~l~~L~~LdLs~n-----~~~~~i~-~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTASSF-PFLEQLQLLELGSQ-----YTPLTID-KEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSSSC-SSCCSCSEEEECTT-----CCCCEEC-TTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCcCEEECCCCc-CCccChhHC-cccccCeEEeCCCC-----CCccccC-HHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 3688999999986 665433333 58999999999853 1111100 123467889999999876542 2233333
Q ss_pred HHHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCC
Q 008973 82 RVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRD 161 (547)
Q Consensus 82 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 161 (547)
.+ ++|+.|+++....... ......+..+++|++|+++.|.+........+..+++|++|++++
T Consensus 95 ~l-----~~L~~L~Ls~n~l~~~------------~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 95 GL-----FHLFELRLYFCGLSDA------------VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp SC-----SSCCCEECTTCCCSSC------------CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred CC-----cccCEeeCcCCCCCcc------------cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 33 7888888876432210 000001455777888888877665543322334677888888877
Q ss_pred CCCCCCccc--c---------------ccchhhhhhhccCC------CcceEEcccccccc--ccccc-ccC--------
Q 008973 162 APLIEPRIT--F---------------DLTNSGLQQINQHG------KLKHLSLIRSQEFL--ITYFR-RVN-------- 207 (547)
Q Consensus 162 ~~~~~~~~~--~---------------~~~~~~l~~l~~~~------~L~~L~l~~~~~~~--~~~~~-~~~-------- 207 (547)
|........ . .+.......+..++ .|++|+++++.-.. ..... .+.
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 643110000 0 00000000111122 25666664321000 00000 000
Q ss_pred ----------------hHHHHHHHH-cCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcC
Q 008973 208 ----------------DLGILLMAD-KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATS 270 (547)
Q Consensus 208 ----------------~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 270 (547)
......+.. ..++|+.|+++++ .+... ....+..+++|+.|+++++. ++.... ..+..+
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l 313 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSL-NSRVFETLKDLKVLNLAYNK-INKIAD-EAFYGL 313 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEE-CSCCSSSCCCCCEEEEESCC-CCEECT-TTTTTC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCC-ccccc-ChhhhhcCCCCCEEECCCCc-CCCCCh-HHhcCC
Confidence 000000000 0245566666553 32221 11123345566666666532 221111 112344
Q ss_pred CCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCcc
Q 008973 271 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 350 (547)
Q Consensus 271 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~ 350 (547)
++|++|+++++ .+.......+..+++|+.|++++| .+.......+..+++|+.|++++|.++... .+++|+
T Consensus 314 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-------~~~~L~ 384 (844)
T 3j0a_A 314 DNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIH-------FIPSIP 384 (844)
T ss_dssp SSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSCCCS-------SCCSCS
T ss_pred CCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCCCCccc-------CCCCcc
Confidence 56666666663 333222223445666666666665 444443344555666666666666554311 155666
Q ss_pred EEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCc
Q 008973 351 KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDD 430 (547)
Q Consensus 351 ~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 430 (547)
.|.++++. ++ .+... ..+++.|++++ +.++..........+++|+.|++++| .++.........
T Consensus 385 ~L~l~~N~-l~-----~l~~~--~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~------ 448 (844)
T 3j0a_A 385 DIFLSGNK-LV-----TLPKI--NLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPS------ 448 (844)
T ss_dssp EEEEESCC-CC-----CCCCC--CTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSC------
T ss_pred hhccCCCC-cc-----ccccc--ccccceeeccc-CccccCchhhhhhcCCccceeeCCCC-cccccccccccc------
Confidence 66666643 32 11111 15677777777 45553333333346788888888888 444321111111
Q ss_pred cccCCCccEEecCCCCCCCHHH-----HHHhhCCCCCCCcEEEeeCCC
Q 008973 431 RWYGSSIRLLDLYNCGGITQLA-----FRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 431 ~~~~~~L~~L~l~~~~~i~~~~-----~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.+++|+.|++++|. ++... ...+. .+++|+.|++++|.
T Consensus 449 --~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~--~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 449 --ENPSLEQLFLGENM-LQLAWETELCWDVFE--GLSHLQVLYLNHNY 491 (844)
T ss_dssp --SCTTCCBCEEESCC-CSSSCCSCCCSSCSS--CBCCEECCCCCHHH
T ss_pred --cCCccccccCCCCc-cccccccccchhhhc--CcccccEEECCCCc
Confidence 56788888888886 43110 11122 36888888888873
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=6.3e-20 Score=185.50 Aligned_cols=342 Identities=19% Similarity=0.213 Sum_probs=238.9
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccccchhHHH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFAR 82 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 82 (547)
+++|+.|+++++. +.. +..+ ..+++|++|+++++ .++... . +..+++|++|+++.+...... .+..
T Consensus 45 l~~l~~L~l~~~~-i~~--l~~~-~~l~~L~~L~Ls~n------~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~-~~~~ 110 (466)
T 1o6v_A 45 LDQVTTLQADRLG-IKS--IDGV-EYLNNLTQINFSNN------QLTDIT--P-LKNLTKLVDILMNNNQIADIT-PLAN 110 (466)
T ss_dssp HHTCCEEECCSSC-CCC--CTTG-GGCTTCCEEECCSS------CCCCCG--G-GTTCTTCCEEECCSSCCCCCG-GGTT
T ss_pred hccccEEecCCCC-Ccc--Ccch-hhhcCCCEEECCCC------ccCCch--h-hhccccCCEEECCCCccccCh-hhcC
Confidence 3689999999986 544 2333 58999999999963 333221 2 577999999999876542111 1222
Q ss_pred HHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCC
Q 008973 83 VWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 162 (547)
Q Consensus 83 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 162 (547)
.++|+.|+++......... +..+++|++|+++.+.+.+.. . ...+++|++|++.++
T Consensus 111 -----l~~L~~L~L~~n~l~~~~~----------------~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~~ 166 (466)
T 1o6v_A 111 -----LTNLTGLTLFNNQITDIDP----------------LKNLTNLNRLELSSNTISDIS--A-LSGLTSLQQLSFGNQ 166 (466)
T ss_dssp -----CTTCCEEECCSSCCCCCGG----------------GTTCTTCSEEEEEEEEECCCG--G-GTTCTTCSEEEEEES
T ss_pred -----CCCCCEEECCCCCCCCChH----------------HcCCCCCCEEECCCCccCCCh--h-hccCCcccEeecCCc
Confidence 2889999998753322211 456899999999988776532 2 347899999999643
Q ss_pred CCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHH
Q 008973 163 PLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILH 242 (547)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 242 (547)
+. .+..+..+++|++|+++++. ...+.. ...+++|++|+++++ .+..... +.
T Consensus 167 ----------~~--~~~~~~~l~~L~~L~l~~n~------l~~~~~------l~~l~~L~~L~l~~n-~l~~~~~---~~ 218 (466)
T 1o6v_A 167 ----------VT--DLKPLANLTTLERLDISSNK------VSDISV------LAKLTNLESLIATNN-QISDITP---LG 218 (466)
T ss_dssp ----------CC--CCGGGTTCTTCCEEECCSSC------CCCCGG------GGGCTTCSEEECCSS-CCCCCGG---GG
T ss_pred ----------cc--CchhhccCCCCCEEECcCCc------CCCChh------hccCCCCCEEEecCC-ccccccc---cc
Confidence 11 22347789999999996532 222211 256899999999996 4443321 45
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCC
Q 008973 243 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQ 322 (547)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 322 (547)
.+++|+.|++++|. ++.. .....+++|++|+++++. +.... .+..+++|+.|++++| .+.... .+..+++
T Consensus 219 ~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~ 288 (466)
T 1o6v_A 219 ILTNLDELSLNGNQ-LKDI---GTLASLTNLTDLDLANNQ-ISNLA--PLSGLTKLTELKLGAN-QISNIS--PLAGLTA 288 (466)
T ss_dssp GCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCCCG--GGTTCTTCSEEECCSS-CCCCCG--GGTTCTT
T ss_pred ccCCCCEEECCCCC-cccc---hhhhcCCCCCEEECCCCc-cccch--hhhcCCCCCEEECCCC-ccCccc--cccCCCc
Confidence 68999999999864 4432 124567899999999964 43322 2678999999999998 565533 3788999
Q ss_pred ccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCC
Q 008973 323 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVP 402 (547)
Q Consensus 323 L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 402 (547)
|+.|++++|.++.... +. .+++|+.|++++|. +++... + .. +++|+.|++++| .++.. .. ...+++
T Consensus 289 L~~L~L~~n~l~~~~~--~~--~l~~L~~L~L~~n~-l~~~~~--~-~~--l~~L~~L~l~~n-~l~~~--~~-l~~l~~ 354 (466)
T 1o6v_A 289 LTNLELNENQLEDISP--IS--NLKNLTYLTLYFNN-ISDISP--V-SS--LTKLQRLFFYNN-KVSDV--SS-LANLTN 354 (466)
T ss_dssp CSEEECCSSCCSCCGG--GG--GCTTCSEEECCSSC-CSCCGG--G-GG--CTTCCEEECCSS-CCCCC--GG-GTTCTT
T ss_pred cCeEEcCCCcccCchh--hc--CCCCCCEEECcCCc-CCCchh--h-cc--CccCCEeECCCC-ccCCc--hh-hccCCC
Confidence 9999999998776432 44 49999999999975 543211 1 22 289999999996 55533 12 236899
Q ss_pred CcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCC
Q 008973 403 ISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 403 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
|+.|++++| .+++... + . .+++|+.|++++|+
T Consensus 355 L~~L~l~~n-~l~~~~~--~-~--------~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 355 INWLSAGHN-QISDLTP--L-A--------NLTRITQLGLNDQA 386 (466)
T ss_dssp CCEEECCSS-CCCBCGG--G-T--------TCTTCCEEECCCEE
T ss_pred CCEEeCCCC-ccCccch--h-h--------cCCCCCEEeccCCc
Confidence 999999999 5655432 2 2 88999999999997
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=2.2e-22 Score=214.53 Aligned_cols=301 Identities=14% Similarity=0.147 Sum_probs=155.6
Q ss_pred CCCCCCccEEEeeccC-CCh-hHHHHHH------hcCCCccEEecCCCCCCCCccccccch-hhhhhhccCCCcceEEcc
Q 008973 123 PSILPGIQKLCLSVDY-ITD-AMVGTIS------QGLVSLTHLDLRDAPLIEPRITFDLTN-SGLQQINQHGKLKHLSLI 193 (547)
Q Consensus 123 ~~~~~~L~~L~l~~~~-~~~-~~~~~l~------~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~L~~L~l~ 193 (547)
+..+++|+.|+++.|. ++. .....+. ..+++|++|++++|. ++. .....+..+++|++|+++
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~---------L~~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN---------LEEFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC---------CCBCCCHHHHTTCTTCCEEECT
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc---------CCccCChhhhhcCCCCCEEECC
Confidence 3456777777777665 554 2222221 134577777777763 221 001135667777777775
Q ss_pred cccccccccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCC-CcEEEecCCCCCCHHHHHHHHhcC--
Q 008973 194 RSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSN-LYKLRVSHGTQLTDLVFHDISATS-- 270 (547)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~-- 270 (547)
++. ...++ ....+++|+.|+++++ .+. .+...+..+++ |+.|++++|. ++. +.......
T Consensus 582 ~N~------l~~lp------~~~~L~~L~~L~Ls~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~-L~~--lp~~~~~~~~ 643 (876)
T 4ecn_A 582 HNK------VRHLE------AFGTNVKLTDLKLDYN-QIE--EIPEDFCAFTDQVEGLGFSHNK-LKY--IPNIFNAKSV 643 (876)
T ss_dssp TSC------CCBCC------CCCTTSEESEEECCSS-CCS--CCCTTSCEECTTCCEEECCSSC-CCS--CCSCCCTTCS
T ss_pred CCC------cccch------hhcCCCcceEEECcCC-ccc--cchHHHhhccccCCEEECcCCC-CCc--Cchhhhcccc
Confidence 421 11222 1134567777777774 444 12222344566 7777777653 331 11111112
Q ss_pred CCccEEEccCCCCCCHHHH---HHhh--cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHH--
Q 008973 271 LSLTHVCLRWCNLLTNHAI---KSLA--SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRL-- 343 (547)
Q Consensus 271 ~~L~~L~l~~~~~l~~~~~---~~l~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~-- 343 (547)
++|+.|+++++ .+..... ..+. .+++|+.|++++| .+.......+..+++|+.|++++|.++......+..
T Consensus 644 ~~L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 644 YVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721 (876)
T ss_dssp SCEEEEECCSS-CTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT
T ss_pred CCCCEEECcCC-cCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc
Confidence 34777777774 3322100 0011 3447777787777 555444444456778888888877665322111110
Q ss_pred ---hcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCC-----CCC
Q 008973 344 ---TVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP-----LIG 415 (547)
Q Consensus 344 ---~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~-----~l~ 415 (547)
..+++|+.|++++|. ++. +........+++|+.|+++++ .++. +..-...+++|+.|++++|+ .+.
T Consensus 722 ~~l~nl~~L~~L~Ls~N~-L~~--lp~~l~~~~l~~L~~L~Ls~N-~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNK-LTS--LSDDFRATTLPYLSNMDVSYN-CFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp SCCTTGGGCCEEECCSSC-CCC--CCGGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred ccccccCCccEEECCCCC-Ccc--chHHhhhccCCCcCEEEeCCC-CCCc--cchhhhcCCCCCEEECCCCCCccccccc
Confidence 012377888887763 441 111111012377888888873 5543 11112257778888886642 122
Q ss_pred HHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 416 DTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
......+. .+++|+.|+|++|. ++. +....+++|+.|++++|+
T Consensus 796 ~~ip~~l~---------~L~~L~~L~Ls~N~-L~~-----Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 796 RQWPTGIT---------TCPSLIQLQIGSND-IRK-----VDEKLTPQLYILDIADNP 838 (876)
T ss_dssp CCCCTTGG---------GCSSCCEEECCSSC-CCB-----CCSCCCSSSCEEECCSCT
T ss_pred ccChHHHh---------cCCCCCEEECCCCC-CCc-----cCHhhcCCCCEEECCCCC
Confidence 11111111 67778888888876 432 222234678888888885
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=1.3e-20 Score=195.23 Aligned_cols=402 Identities=13% Similarity=0.097 Sum_probs=236.4
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccccchhHHH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFAR 82 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 82 (547)
+++|++|+|+++. +.......+ .++++|++|++++ +.++... ...+.++++|++|+|+++....-+..
T Consensus 51 ~~~L~~L~Ls~N~-i~~~~~~~~-~~l~~L~~L~Ls~------N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~--- 118 (562)
T 3a79_B 51 PPRTKALSLSQNS-ISELRMPDI-SFLSELRVLRLSH------NRIRSLD-FHVFLFNQDLEYLDVSHNRLQNISCC--- 118 (562)
T ss_dssp CTTCCEEECCSSC-CCCCCGGGT-TTCTTCCEEECCS------CCCCEEC-TTTTTTCTTCCEEECTTSCCCEECSC---
T ss_pred CCCcCEEECCCCC-ccccChhhh-ccCCCccEEECCC------CCCCcCC-HHHhCCCCCCCEEECCCCcCCccCcc---
Confidence 4678888888886 655433333 5888899999885 3333221 12345688889998887654211111
Q ss_pred HHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCc--cEEecC
Q 008973 83 VWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSL--THLDLR 160 (547)
Q Consensus 83 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L--~~L~l~ 160 (547)
..++|+.|+++.......+. ...+..+++|++|+++.+.+....+. .+++| ++|+++
T Consensus 119 ----~l~~L~~L~Ls~N~l~~l~~-------------p~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~L~L~~L~L~ 177 (562)
T 3a79_B 119 ----PMASLRHLDLSFNDFDVLPV-------------CKEFGNLTKLTFLGLSAAKFRQLDLL----PVAHLHLSCILLD 177 (562)
T ss_dssp ----CCTTCSEEECCSSCCSBCCC-------------CGGGGGCTTCCEEEEECSBCCTTTTG----GGTTSCEEEEEEE
T ss_pred ----ccccCCEEECCCCCccccCc-------------hHhhcccCcccEEecCCCccccCchh----hhhhceeeEEEee
Confidence 23788888887643221110 00145678999999998888764433 44555 999988
Q ss_pred CCCC--CCCcc--ccccc--------------h-hhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCC
Q 008973 161 DAPL--IEPRI--TFDLT--------------N-SGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASM 221 (547)
Q Consensus 161 ~~~~--~~~~~--~~~~~--------------~-~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 221 (547)
+|.. ..... ...+. . ..-..+..+++|+.++++.+.. .+..+. ..+ ......++|
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~----~~~~l~-~~~-~~l~~l~~L 251 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE----NCQRLM-TFL-SELTRGPTL 251 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST----THHHHH-HHH-HHHHSCSSC
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc----ccchHH-HHH-HHHhccCcc
Confidence 8753 11000 00000 0 0000112455666666643110 011111 111 122446677
Q ss_pred cEEEEcCCCCCCHHHHHHHHH--cCCCCcEEEecCCCC------------------------------CCHHHHHHHHhc
Q 008973 222 ESICLGGFCRVTDTGFKTILH--SCSNLYKLRVSHGTQ------------------------------LTDLVFHDISAT 269 (547)
Q Consensus 222 ~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~------------------------------~~~~~~~~~~~~ 269 (547)
+.|.+.++ .+....+..+.. ..++|++|++++|.. +....+..+...
T Consensus 252 ~~L~L~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~ 330 (562)
T 3a79_B 252 LNVTLQHI-ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330 (562)
T ss_dssp EEEEEEEE-EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred eEEEecCC-cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc
Confidence 77777663 455444433322 234666666665421 111223323222
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhH--HHHHHhcCC
Q 008973 270 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGV--SYLRLTVIT 347 (547)
Q Consensus 270 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l--~~l~~~~~~ 347 (547)
++|++|+++++. +.... ....+++|++|++++| .+.......+..+++|+.|++++|.++.... ..+. .++
T Consensus 331 -~~L~~L~l~~n~-~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--~l~ 403 (562)
T 3a79_B 331 -MNIKMLSISDTP-FIHMV--CPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK--NMS 403 (562)
T ss_dssp -CCCSEEEEESSC-CCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT--TCT
T ss_pred -CcceEEEccCCC-ccccc--CccCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc--CCC
Confidence 478888888853 32211 1147899999999998 6776556677899999999999998876332 2233 489
Q ss_pred CccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcC-CCCcEEeccCCCCCCHHHHHHHHhcc
Q 008973 348 SLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR-VPISELRVRQCPLIGDTSVIALASML 426 (547)
Q Consensus 348 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~ 426 (547)
+|+.|+++++. ++........ ..+++|++|++++ +.++..... .+ ++|+.|++++| .++. +....
T Consensus 404 ~L~~L~l~~N~-l~~~~~~~~~--~~l~~L~~L~l~~-n~l~~~~~~----~l~~~L~~L~L~~N-~l~~-----ip~~~ 469 (562)
T 3a79_B 404 SLETLDVSLNS-LNSHAYDRTC--AWAESILVLNLSS-NMLTGSVFR----CLPPKVKVLDLHNN-RIMS-----IPKDV 469 (562)
T ss_dssp TCCEEECTTSC-CBSCCSSCCC--CCCTTCCEEECCS-SCCCGGGGS----SCCTTCSEEECCSS-CCCC-----CCTTT
T ss_pred CCCEEECCCCc-CCCccChhhh--cCcccCCEEECCC-CCCCcchhh----hhcCcCCEEECCCC-cCcc-----cChhh
Confidence 99999999875 4321000011 1238999999999 467643332 44 69999999999 5662 22212
Q ss_pred ccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 427 VDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 427 ~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
+ .+++|+.|++++|. ++......+. .+++|+.|++++|+
T Consensus 470 ~-----~l~~L~~L~L~~N~-l~~l~~~~~~--~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 470 T-----HLQALQELNVASNQ-LKSVPDGVFD--RLTSLQYIWLHDNP 508 (562)
T ss_dssp T-----SSCCCSEEECCSSC-CCCCCTTSTT--TCTTCCCEECCSCC
T ss_pred c-----CCCCCCEEECCCCC-CCCCCHHHHh--cCCCCCEEEecCCC
Confidence 2 67899999999997 7643322243 48999999999997
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=4.4e-22 Score=201.18 Aligned_cols=351 Identities=16% Similarity=0.094 Sum_probs=202.3
Q ss_pred CCccceeecccccccccchhHHHHHHHhhcccceeeccCcchH-hh-hhhcCCCcCCCCCCCccCCCCCCCccEEEeecc
Q 008973 60 CPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSV-MV-TELLSPNVEPHQSPNQIRPSILPGIQKLCLSVD 137 (547)
Q Consensus 60 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 137 (547)
.++|++|+|+++... ......+ ...++|+.|+++..... .. ... +..+++|++|+++++
T Consensus 29 ~~~l~~L~Ls~n~i~--~~~~~~~--~~l~~L~~L~L~~n~~~~~i~~~~---------------~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 29 PAHVNYVDLSLNSIA--ELNETSF--SRLQDLQFLKVEQQTPGLVIRNNT---------------FRGLSSLIILKLDYN 89 (455)
T ss_dssp CTTCCEEECCSSCCC--EECTTTT--SSCTTCCEEECCCCSTTCEECTTT---------------TTTCTTCCEEECTTC
T ss_pred CCccCEEEecCCccC--cCChhHh--ccCccccEEECcCCcccceECccc---------------ccccccCCEEeCCCC
Confidence 367888888865432 1111111 11266777777654221 00 111 455778888888877
Q ss_pred CCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhh--hccCCCcceEEcccccccccccccccChHHHHHHH
Q 008973 138 YITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQ--INQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMA 215 (547)
Q Consensus 138 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 215 (547)
.+.......+ ..+++|++|++++| .++...... +..+++|++|+++++. ...+... .+.
T Consensus 90 ~l~~~~~~~~-~~l~~L~~L~L~~n---------~l~~~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~---~~~ 150 (455)
T 3v47_A 90 QFLQLETGAF-NGLANLEVLTLTQC---------NLDGAVLSGNFFKPLTSLEMLVLRDNN------IKKIQPA---SFF 150 (455)
T ss_dssp TTCEECTTTT-TTCTTCCEEECTTS---------CCBTHHHHSSTTTTCTTCCEEECCSSB------CCSCCCC---GGG
T ss_pred ccCccChhhc-cCcccCCEEeCCCC---------CCCccccCcccccCcccCCEEECCCCc------cCccCcc---ccc
Confidence 6655433222 36778888888876 333322222 5677788888885421 1222111 112
Q ss_pred HcCCCCcEEEEcCCCCCCHHHHHHHHHc--CCCCcEEEecCCCCCCHHHH-----HH--HHhcCCCccEEEccCCCCCCH
Q 008973 216 DKCASMESICLGGFCRVTDTGFKTILHS--CSNLYKLRVSHGTQLTDLVF-----HD--ISATSLSLTHVCLRWCNLLTN 286 (547)
Q Consensus 216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~-----~~--~~~~~~~L~~L~l~~~~~l~~ 286 (547)
..+++|++|+++++ .+....... +.. ..+|+.|+++++. +..... .. .....++|++|+++++ .+..
T Consensus 151 ~~l~~L~~L~L~~n-~l~~~~~~~-l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~ 226 (455)
T 3v47_A 151 LNMRRFHVLDLTFN-KVKSICEED-LLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKE 226 (455)
T ss_dssp GGCTTCCEEECTTC-CBSCCCTTT-SGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCH
T ss_pred CCCCcccEEeCCCC-cccccChhh-hhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCC-cccc
Confidence 45778888888774 333221111 111 2577777777643 221110 00 0113467888899884 5555
Q ss_pred HHHHHhh---cCCCCCEEeCCCCCCCCh---------HHHHhhh--CCCCccEEEecCccCChHhHHHHHHhcCCCccEE
Q 008973 287 HAIKSLA---SNTGIKVLDLRDCKNLGD---------EALRAIS--SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKL 352 (547)
Q Consensus 287 ~~~~~l~---~~~~L~~L~l~~~~~l~~---------~~~~~l~--~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L 352 (547)
.....+. ..++|+.|+++++..... .....+. ..++|+.|++++|.++......+.. +++|+.|
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L 304 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH--FTDLEQL 304 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT--CTTCCEE
T ss_pred cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc--CCCCCEE
Confidence 4444333 347888888887632111 0011111 3478999999999887654444444 8899999
Q ss_pred EeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccc
Q 008973 353 SLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRW 432 (547)
Q Consensus 353 ~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~ 432 (547)
+++++. ++......+ ..+++|++|+++++ .++......+ ..+++|+.|++++| .++......+.
T Consensus 305 ~Ls~n~-l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~--------- 368 (455)
T 3v47_A 305 TLAQNE-INKIDDNAF---WGLTHLLKLNLSQN-FLGSIDSRMF-ENLDKLEVLDLSYN-HIRALGDQSFL--------- 368 (455)
T ss_dssp ECTTSC-CCEECTTTT---TTCTTCCEEECCSS-CCCEECGGGG-TTCTTCCEEECCSS-CCCEECTTTTT---------
T ss_pred ECCCCc-ccccChhHh---cCcccCCEEECCCC-ccCCcChhHh-cCcccCCEEECCCC-cccccChhhcc---------
Confidence 999865 542211111 12389999999994 6653222212 26899999999999 56544333332
Q ss_pred cCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 433 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 433 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.+++|++|++++|. ++......+. .+++|+.|++++|+
T Consensus 369 ~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 369 GLPNLKELALDTNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 406 (455)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ccccccEEECCCCc-cccCCHhHhc--cCCcccEEEccCCC
Confidence 77899999999987 7654433344 48999999999886
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=8.4e-21 Score=195.09 Aligned_cols=210 Identities=15% Similarity=0.068 Sum_probs=137.7
Q ss_pred CCCCcEEEEcCCCC-CCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCC
Q 008973 218 CASMESICLGGFCR-VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 296 (547)
Q Consensus 218 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 296 (547)
+++|+.++++++.. +....+..++. ..+|+.|+++++.... .. ....+++|++|+++++ .+.......+..++
T Consensus 275 l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~l~~-~~---~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 348 (520)
T 2z7x_B 275 LKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVH-ML---CPSKISPFLHLDFSNN-LLTDTVFENCGHLT 348 (520)
T ss_dssp CCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSCCCC-CC---CCSSCCCCCEEECCSS-CCCTTTTTTCCCCS
T ss_pred CceeEeccccccceecchhhhhcccc-cCceeEEEcCCCcccc-cc---chhhCCcccEEEeECC-ccChhhhhhhccCC
Confidence 44555555554321 11122333222 3679999999865322 11 1146789999999995 55554445677899
Q ss_pred CCCEEeCCCCCCCChH--HHHhhhCCCCccEEEecCccCCh-HhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCC
Q 008973 297 GIKVLDLRDCKNLGDE--ALRAISSLPQLKILLLDGSDISD-VGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 373 (547)
Q Consensus 297 ~L~~L~l~~~~~l~~~--~~~~l~~~~~L~~L~l~~~~l~~-~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 373 (547)
+|+.|++++| .+... ....+..+++|++|++++|.++. .....+. .+++|+.|++++|. ++......+ .
T Consensus 349 ~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~--~l~~L~~L~Ls~N~-l~~~~~~~l---~- 420 (520)
T 2z7x_B 349 ELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS--WTKSLLSLNMSSNI-LTDTIFRCL---P- 420 (520)
T ss_dssp SCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC--CCTTCCEEECCSSC-CCGGGGGSC---C-
T ss_pred CCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc--cCccCCEEECcCCC-CCcchhhhh---c-
Confidence 9999999999 67763 33567899999999999998876 3322222 47899999999975 553222222 1
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHH
Q 008973 374 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 453 (547)
Q Consensus 374 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 453 (547)
++|+.|+++++ .++. +..-...+++|+.|++++| .++......+. .+++|+.|++++|+...+..+
T Consensus 421 -~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~---------~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 421 -PRIKVLDLHSN-KIKS--IPKQVVKLEALQELNVASN-QLKSVPDGIFD---------RLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp -TTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSCBCCCHHH
T ss_pred -ccCCEEECCCC-cccc--cchhhhcCCCCCEEECCCC-cCCccCHHHhc---------cCCcccEEECcCCCCcccCCc
Confidence 69999999995 6662 1111126899999999999 56633222121 789999999999984333333
Q ss_pred HH
Q 008973 454 RW 455 (547)
Q Consensus 454 ~~ 455 (547)
.+
T Consensus 487 ~~ 488 (520)
T 2z7x_B 487 ID 488 (520)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=1.6e-22 Score=219.26 Aligned_cols=404 Identities=16% Similarity=0.079 Sum_probs=239.8
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccc---cchh
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLF---LRHN 79 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~ 79 (547)
+++|+.|+|++|........ ..+.++++|++|+|++ +.++... +..+.++++|++|+|+.|.... ....
T Consensus 47 l~~L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~------N~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 118 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGS------SKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGY 118 (844)
T ss_dssp CCSCSEEEECTTCCCCEECT-TTTSSCTTCCEEECTT------CCCCEEC-TTSSCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred cccCeEEeCCCCCCccccCH-HHhcCCCCCCEEECCC------CcCcccC-HhHccCCcccCEeeCcCCCCCcccccCcc
Confidence 57899999999953332222 2346999999999985 3333221 2334679999999999765421 1111
Q ss_pred HHHHHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCCh---hHHHHHHhcCCCccE
Q 008973 80 FARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITD---AMVGTISQGLVSLTH 156 (547)
Q Consensus 80 ~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~~L~~ 156 (547)
+..+ ++|+.|+++......... ...+..+++|++|+++++.+.. ..+..+.. ++|+.
T Consensus 119 ~~~L-----~~L~~L~Ls~N~l~~~~~-------------~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~ 178 (844)
T 3j0a_A 119 FRNL-----KALTRLDLSKNQIRSLYL-------------HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSF 178 (844)
T ss_dssp CSSC-----SSCCEEEEESCCCCCCCC-------------CGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCC
T ss_pred cccc-----CCCCEEECCCCccccccc-------------chhHhhCCCCCEEECCCCcCCeeCHHHcccccC--Cccce
Confidence 3333 789999988653221100 0014557888888888776654 23332211 44444
Q ss_pred EecCCCCCCCCccc---------------------cccchhhhhhhc---------------------------------
Q 008973 157 LDLRDAPLIEPRIT---------------------FDLTNSGLQQIN--------------------------------- 182 (547)
Q Consensus 157 L~l~~~~~~~~~~~---------------------~~~~~~~l~~l~--------------------------------- 182 (547)
|++++|........ ..++......+.
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 44444432111000 011111111110
Q ss_pred -----cCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCC
Q 008973 183 -----QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQ 257 (547)
Q Consensus 183 -----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 257 (547)
..++|+.|+++++. ...+.... ...+++|+.|+++++ .+.... ...+..+++|+.|++++|.
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~------l~~~~~~~----~~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~Ls~N~- 325 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGF------VFSLNSRV----FETLKDLKVLNLAYN-KINKIA-DEAFYGLDNLQVLNLSYNL- 325 (844)
T ss_dssp TTTTTTTSCCCEEECTTCC------CCEECSCC----SSSCCCCCEEEEESC-CCCEEC-TTTTTTCSSCCEEEEESCC-
T ss_pred hhhccccCCccEEECCCCc------ccccChhh----hhcCCCCCEEECCCC-cCCCCC-hHHhcCCCCCCEEECCCCC-
Confidence 02567777775421 12221111 145789999999985 554331 1235668999999999864
Q ss_pred CCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHh
Q 008973 258 LTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVG 337 (547)
Q Consensus 258 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 337 (547)
++.... ..+..+++|+.|+++++ .+.......+..+++|+.|++++| .++. +..+++|+.|++++|.++..
T Consensus 326 l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~-----i~~~~~L~~L~l~~N~l~~l- 396 (844)
T 3j0a_A 326 LGELYS-SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTT-----IHFIPSIPDIFLSGNKLVTL- 396 (844)
T ss_dssp CSCCCS-CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCC-----CSSCCSCSEEEEESCCCCCC-
T ss_pred CCccCH-HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCc-----ccCCCCcchhccCCCCcccc-
Confidence 332111 12345789999999994 555444445668999999999998 5553 34589999999999987632
Q ss_pred HHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHH
Q 008973 338 VSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDT 417 (547)
Q Consensus 338 l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 417 (547)
.. ...+++.|+++++. ++......... .+++|+.|+++++ .++..........+++|+.|++++| .++..
T Consensus 397 ----~~-~~~~l~~L~ls~N~-l~~l~~~~~~~--~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~ 466 (844)
T 3j0a_A 397 ----PK-INLTANLIHLSENR-LENLDILYFLL--RVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGEN-MLQLA 466 (844)
T ss_dssp ----CC-CCTTCCEEECCSCC-CCSSTTHHHHT--TCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESC-CCSSS
T ss_pred ----cc-cccccceeecccCc-cccCchhhhhh--cCCccceeeCCCC-cccccccccccccCCccccccCCCC-ccccc
Confidence 12 35689999999864 54322222222 2389999999994 5542211111224789999999999 44321
Q ss_pred HHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 418 SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 418 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.........+ ..+++|+.|+|++|. ++......+. .+++|+.|++++|.
T Consensus 467 ~~~~~~~~~~----~~l~~L~~L~Ls~N~-l~~~~~~~~~--~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 467 WETELCWDVF----EGLSHLQVLYLNHNY-LNSLPPGVFS--HLTALRGLSLNSNR 515 (844)
T ss_dssp CCSCCCSSCS----SCBCCEECCCCCHHH-HTTCCTTSSS--SCCSCSEEEEESCC
T ss_pred cccccchhhh----cCcccccEEECCCCc-ccccChhHcc--chhhhheeECCCCC
Confidence 1000000001 177999999999996 6543333343 48999999999995
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=4.5e-21 Score=199.63 Aligned_cols=412 Identities=16% Similarity=0.098 Sum_probs=249.2
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccccccc-c-chhH
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLF-L-RHNF 80 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~-~~~~ 80 (547)
.++|++|+|+++. +....... +.++++|++|++++. .++...- ..+..+++|++|+++++.... . +..+
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n------~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~ 145 (570)
T 2z63_A 75 LSHLSTLILTGNP-IQSLALGA-FSGLSSLQKLVAVET------NLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYF 145 (570)
T ss_dssp CTTCCEEECTTCC-CCEECTTT-TTTCTTCCEEECTTS------CCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred chhCCEEeCcCCc-CCccCHhh-hcCcccccccccccc------ccccCCC-ccccccccccEEecCCCccceecChhhh
Confidence 4789999999986 55543333 358999999999853 2221110 014568889999988665421 1 2333
Q ss_pred HHHHHHhhcccceeeccCcch-----Hhhhhhc-------CCCcCCCCCCCcc--CCCCCCCccEEEeeccCCChhHHHH
Q 008973 81 ARVWALASEKLTSLEIGYISS-----VMVTELL-------SPNVEPHQSPNQI--RPSILPGIQKLCLSVDYITDAMVGT 146 (547)
Q Consensus 81 ~~l~~~~~~~L~~L~l~~~~~-----~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~ 146 (547)
..+ ++|+.|+++.... ..+..+. ...+....+.... .+. ..+|++|+++.+......+..
T Consensus 146 ~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~ 219 (570)
T 2z63_A 146 SNL-----TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKT 219 (570)
T ss_dssp GGC-----TTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCTTHHHH
T ss_pred ccc-----CCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhc-cCcceeEecccccccccchhh
Confidence 333 7888888875321 1111111 1112222222211 122 237899998877665556666
Q ss_pred HHhcCCCccEEecCCCC--C---CCCccc---c----------------ccchhhhhhhccCCCcceEEccccccccccc
Q 008973 147 ISQGLVSLTHLDLRDAP--L---IEPRIT---F----------------DLTNSGLQQINQHGKLKHLSLIRSQEFLITY 202 (547)
Q Consensus 147 l~~~~~~L~~L~l~~~~--~---~~~~~~---~----------------~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 202 (547)
....+++++.+.+.... . +..... . .+.......+..+++|++|++.++.
T Consensus 220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~------ 293 (570)
T 2z63_A 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT------ 293 (570)
T ss_dssp HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE------
T ss_pred hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc------
Confidence 66677776655442110 0 000000 0 1111122345578999999996532
Q ss_pred ccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCC
Q 008973 203 FRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 282 (547)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 282 (547)
...+... ...+ +|++|++++| .+... .. ..+++|+.|+++++........ ..+++|++|+++++
T Consensus 294 l~~l~~~-----~~~~-~L~~L~l~~n-~~~~l--~~--~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n- 357 (570)
T 2z63_A 294 IERVKDF-----SYNF-GWQHLELVNC-KFGQF--PT--LKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRN- 357 (570)
T ss_dssp ECSCCBC-----CSCC-CCSEEEEESC-BCSSC--CB--CBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSS-
T ss_pred chhhhhh-----hccC-CccEEeeccC-ccccc--Cc--ccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCC-
Confidence 1222211 1335 8999999996 44421 11 3588999999998653221111 46789999999995
Q ss_pred CCCHHH--HHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhH-HHHHHhcCCCccEEEeCCCCC
Q 008973 283 LLTNHA--IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGV-SYLRLTVITSLVKLSLRGCKR 359 (547)
Q Consensus 283 ~l~~~~--~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l-~~l~~~~~~~L~~L~l~~~~~ 359 (547)
.+.... ...+..+++|++|++++| .+...... +..+++|++|++++|.+..... ..+. .+++|+.|++++|.
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~- 432 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTH- 432 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT--TCTTCCEEECTTSC-
T ss_pred ccCccccccccccccCccCEEECCCC-cccccccc-ccccCCCCEEEccCCccccccchhhhh--cCCCCCEEeCcCCc-
Confidence 444321 234557899999999998 55543333 7789999999999997765432 2233 48999999999975
Q ss_pred CcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccE
Q 008973 360 LTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRL 439 (547)
Q Consensus 360 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~ 439 (547)
++......+ . .+++|++|++++| .+.+..+......+++|+.|++++| .++......+. .+++|+.
T Consensus 433 l~~~~~~~~-~--~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~ 498 (570)
T 2z63_A 433 TRVAFNGIF-N--GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFN---------SLSSLQV 498 (570)
T ss_dssp CEECCTTTT-T--TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTT---------TCTTCCE
T ss_pred ccccchhhh-h--cCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCChhhhh---------cccCCCE
Confidence 432211111 1 2389999999995 4432111122236899999999999 56654333333 7899999
Q ss_pred EecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 440 LDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 440 L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
|++++|. ++......+. .+++|+.|++++|+
T Consensus 499 L~l~~n~-l~~~~~~~~~--~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 499 LNMASNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 529 (570)
T ss_dssp EECCSSC-CSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred EeCCCCc-CCCCCHHHhh--cccCCcEEEecCCc
Confidence 9999996 7654444444 48999999999986
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=5e-21 Score=194.50 Aligned_cols=300 Identities=18% Similarity=0.136 Sum_probs=130.0
Q ss_pred CCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccccccccc
Q 008973 127 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRV 206 (547)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 206 (547)
++++.|+|+.+.++......+ ..+++|++|+|++| .++......+..+++|++|+++++ ....+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n---------~i~~~~~~~~~~l~~L~~L~L~~n------~l~~~ 95 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNEN---------IVSAVEPGAFNNLFNLRTLGLRSN------RLKLI 95 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTS---------CCCEECTTTTTTCTTCCEEECCSS------CCCSC
T ss_pred CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCC---------ccCEeChhhhhCCccCCEEECCCC------cCCcc
Confidence 355556655555544222211 24555666666554 222222233445555666655431 11112
Q ss_pred ChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCH
Q 008973 207 NDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN 286 (547)
Q Consensus 207 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 286 (547)
....+ ..+++|++|+++++ .+... ....+..+++|+.|+++++. ++..... .+..+++|++|+++++ .+..
T Consensus 96 ~~~~~----~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~ 166 (477)
T 2id5_A 96 PLGVF----TGLSNLTKLDISEN-KIVIL-LDYMFQDLYNLKSLEVGDND-LVYISHR-AFSGLNSLEQLTLEKC-NLTS 166 (477)
T ss_dssp CTTSS----TTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEEECCTT-CCEECTT-SSTTCTTCCEEEEESC-CCSS
T ss_pred Ccccc----cCCCCCCEEECCCC-ccccC-ChhHccccccCCEEECCCCc-cceeChh-hccCCCCCCEEECCCC-cCcc
Confidence 11111 23455666666553 33221 11113345566666665532 2211100 1223455666666553 3333
Q ss_pred HHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHH
Q 008973 287 HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCIS 366 (547)
Q Consensus 287 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~ 366 (547)
.....+..+++|+.|+++++ .+.......+..+++|+.|++++|............ ..+|+.|+++++. ++.....
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n~-l~~~~~~ 242 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--GLNLTSLSITHCN-LTAVPYL 242 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT--TCCCSEEEEESSC-CCSCCHH
T ss_pred cChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCccccc--CccccEEECcCCc-ccccCHH
Confidence 33334445566666666555 444433334455566666666655322211111111 3356666665542 3321111
Q ss_pred HHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCC
Q 008973 367 ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 367 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
.+. .+++|+.|+++++ .++......+ ..+++|+.|++++| .++......+. .+++|+.|+|++|.
T Consensus 243 ~~~---~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~---------~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 243 AVR---HLVYLRFLNLSYN-PISTIEGSML-HELLRLQEIQLVGG-QLAVVEPYAFR---------GLNYLRVLNVSGNQ 307 (477)
T ss_dssp HHT---TCTTCCEEECCSS-CCCEECTTSC-TTCTTCCEEECCSS-CCSEECTTTBT---------TCTTCCEEECCSSC
T ss_pred Hhc---CccccCeeECCCC-cCCccChhhc-cccccCCEEECCCC-ccceECHHHhc---------CcccCCEEECCCCc
Confidence 111 1155666666652 3332111111 14556666666655 34332211111 45566666666654
Q ss_pred CCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 447 GITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 447 ~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
++......+. .+++|+.|++.+|+
T Consensus 308 -l~~~~~~~~~--~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 308 -LTTLEESVFH--SVGNLETLILDSNP 331 (477)
T ss_dssp -CSCCCGGGBS--CGGGCCEEECCSSC
T ss_pred -CceeCHhHcC--CCcccCEEEccCCC
Confidence 4433222232 25566666666654
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=4.3e-19 Score=175.19 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=93.0
Q ss_pred CCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCcc
Q 008973 271 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 350 (547)
Q Consensus 271 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~ 350 (547)
++|++|+++++ .+...+ ....++|+.|++++| .++.. ..+..+++|++|++++|.++......+.. +++|+
T Consensus 205 ~~L~~L~l~~n-~l~~~~---~~~~~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~ 275 (390)
T 3o6n_A 205 IAVEELDASHN-SINVVR---GPVNVELTILKLQHN-NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK--MQRLE 275 (390)
T ss_dssp SSCSEEECCSS-CCCEEE---CCCCSSCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT--CSSCC
T ss_pred CcceEEECCCC-eeeecc---ccccccccEEECCCC-CCccc--HHHcCCCCccEEECCCCcCCCcChhHccc--cccCC
Confidence 46666666663 332221 113467777777776 45443 45667777777777777666544444444 77777
Q ss_pred EEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCc
Q 008973 351 KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDD 430 (547)
Q Consensus 351 ~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 430 (547)
.|+++++. ++... .. ...+++|++|+++++ .++.... .+ ..+++|+.|++++| .++... ..
T Consensus 276 ~L~L~~n~-l~~~~--~~--~~~l~~L~~L~L~~n-~l~~~~~-~~-~~l~~L~~L~L~~N-~i~~~~----~~------ 336 (390)
T 3o6n_A 276 RLYISNNR-LVALN--LY--GQPIPTLKVLDLSHN-HLLHVER-NQ-PQFDRLENLYLDHN-SIVTLK----LS------ 336 (390)
T ss_dssp EEECCSSC-CCEEE--CS--SSCCTTCCEEECCSS-CCCCCGG-GH-HHHTTCSEEECCSS-CCCCCC----CC------
T ss_pred EEECCCCc-CcccC--cc--cCCCCCCCEEECCCC-cceecCc-cc-cccCcCCEEECCCC-ccceeC----ch------
Confidence 77777753 43210 00 112378888888884 5542111 11 24678888888888 454432 11
Q ss_pred cccCCCccEEecCCCCCCCHHHHHHhhC
Q 008973 431 RWYGSSIRLLDLYNCGGITQLAFRWLKK 458 (547)
Q Consensus 431 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 458 (547)
.+++|+.|++++|+ ++......+..
T Consensus 337 --~~~~L~~L~l~~N~-~~~~~~~~~~~ 361 (390)
T 3o6n_A 337 --THHTLKNLTLSHND-WDCNSLRALFR 361 (390)
T ss_dssp --TTCCCSEEECCSSC-EEHHHHHHHTT
T ss_pred --hhccCCEEEcCCCC-ccchhHHHHHH
Confidence 67888888888887 77666665544
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.76 E-value=5.1e-19 Score=177.34 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=60.6
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCC
Q 008973 218 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 297 (547)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 297 (547)
+++|++|+++++..+.... +..+++|+.|+++++ .++... ...+++|+.|+++++ .++.. .+..+++
T Consensus 147 l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~l~----l~~l~~L~~L~l~~N-~l~~~---~l~~l~~ 213 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITELD----VSQNKLLNRLNCDTN-NITKL---DLNQNIQ 213 (457)
T ss_dssp CTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCCCC----CTTCTTCCEEECCSS-CCSCC---CCTTCTT
T ss_pred CCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccceec----cccCCCCCEEECcCC-cCCee---ccccCCC
Confidence 4555555555543332221 223556666666654 233211 234556666666663 33332 2456677
Q ss_pred CCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCC
Q 008973 298 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 356 (547)
Q Consensus 298 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~ 356 (547)
|+.|++++| .++.. . +..+++|+.|++++|.++.... . .+++|+.|+++.
T Consensus 214 L~~L~Ls~N-~l~~i--p-~~~l~~L~~L~l~~N~l~~~~~---~--~l~~L~~L~l~~ 263 (457)
T 3bz5_A 214 LTFLDCSSN-KLTEI--D-VTPLTQLTYFDCSVNPLTELDV---S--TLSKLTTLHCIQ 263 (457)
T ss_dssp CSEEECCSS-CCSCC--C-CTTCTTCSEEECCSSCCSCCCC---T--TCTTCCEEECTT
T ss_pred CCEEECcCC-ccccc--C-ccccCCCCEEEeeCCcCCCcCH---H--HCCCCCEEeccC
Confidence 777777766 45442 1 5566777777777776655331 1 255555555443
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=1.1e-18 Score=172.19 Aligned_cols=224 Identities=18% Similarity=0.188 Sum_probs=139.6
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCC
Q 008973 218 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 297 (547)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 297 (547)
+++|++|+++++ .+.... ...+..+++|+.|+++++. ++... ....++|++|+++++ .+.. +...++
T Consensus 140 l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~L~~L~l~~n-~l~~-----~~~~~~ 206 (390)
T 3o6n_A 140 TPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYN-LLST-----LAIPIA 206 (390)
T ss_dssp CTTCCEEECCSS-CCCBCC-TTTTSSCTTCCEEECCSSC-CSBCC----GGGCTTCSEEECCSS-CCSE-----EECCSS
T ss_pred CCCCcEEECCCC-ccCccC-hhhccCCCCCCEEECCCCc-CCccc----cccccccceeecccc-cccc-----cCCCCc
Confidence 555666666553 332211 1123446677777777642 33221 234578888888873 4332 335678
Q ss_pred CCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCc
Q 008973 298 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQL 377 (547)
Q Consensus 298 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L 377 (547)
|+.|+++++ .+..... ...++|+.|++++|.+++. ..+.. +++|+.|+++++. ++......+ ..+++|
T Consensus 207 L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~--l~~L~~L~Ls~n~-l~~~~~~~~---~~l~~L 274 (390)
T 3o6n_A 207 VEELDASHN-SINVVRG---PVNVELTILKLQHNNLTDT--AWLLN--YPGLVEVDLSYNE-LEKIMYHPF---VKMQRL 274 (390)
T ss_dssp CSEEECCSS-CCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGG--CTTCSEEECCSSC-CCEEESGGG---TTCSSC
T ss_pred ceEEECCCC-eeeeccc---cccccccEEECCCCCCccc--HHHcC--CCCccEEECCCCc-CCCcChhHc---cccccC
Confidence 999999988 5554321 3468999999999988764 33444 8999999999864 543211112 123899
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhh
Q 008973 378 QELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLK 457 (547)
Q Consensus 378 ~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~ 457 (547)
++|++++ +.++.... ....+++|+.|++++| .++.... .+. .+++|+.|++++|. ++... +.
T Consensus 275 ~~L~L~~-n~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~-~~~---------~l~~L~~L~L~~N~-i~~~~---~~ 336 (390)
T 3o6n_A 275 ERLYISN-NRLVALNL--YGQPIPTLKVLDLSHN-HLLHVER-NQP---------QFDRLENLYLDHNS-IVTLK---LS 336 (390)
T ss_dssp CEEECCS-SCCCEEEC--SSSCCTTCCEEECCSS-CCCCCGG-GHH---------HHTTCSEEECCSSC-CCCCC---CC
T ss_pred CEEECCC-CcCcccCc--ccCCCCCCCEEECCCC-cceecCc-ccc---------ccCcCCEEECCCCc-cceeC---ch
Confidence 9999999 46653211 1135789999999999 4553221 122 56789999999997 66432 22
Q ss_pred CCCCCCCcEEEeeCCC-CHHHHHHHHhhCC
Q 008973 458 KPYFPRLRWLGVTGSV-NRDILDALARSRP 486 (547)
Q Consensus 458 ~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~ 486 (547)
.+++|+.|++++|+ .......+....+
T Consensus 337 --~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 364 (390)
T 3o6n_A 337 --THHTLKNLTLSHNDWDCNSLRALFRNVA 364 (390)
T ss_dssp --TTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred --hhccCCEEEcCCCCccchhHHHHHHHHH
Confidence 58899999999997 3344444444443
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=1.1e-19 Score=188.29 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=129.1
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChH--
Q 008973 235 TGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDE-- 312 (547)
Q Consensus 235 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~-- 312 (547)
..+..++. ..+|+.|+++++.... .. ....+++|++|+++++ .+.......+..+++|+.|++++| .++..
T Consensus 322 ~~~~~~~~-~~~L~~L~l~~n~~~~-~~---~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 394 (562)
T 3a79_B 322 EALYSVFA-EMNIKMLSISDTPFIH-MV---CPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRN-GLKNFFK 394 (562)
T ss_dssp HHHHHHHH-TCCCSEEEEESSCCCC-CC---CCSSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSS-CCCBTTH
T ss_pred hhhhhhhc-cCcceEEEccCCCccc-cc---CccCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCC-CcCCccc
Confidence 33444333 4689999999865322 11 1146789999999994 555544456678999999999998 67653
Q ss_pred HHHhhhCCCCccEEEecCccCCh-HhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHH
Q 008973 313 ALRAISSLPQLKILLLDGSDISD-VGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDN 391 (547)
Q Consensus 313 ~~~~l~~~~~L~~L~l~~~~l~~-~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~ 391 (547)
....+..+++|+.|++++|.++. .....+. .+++|+.|+++++. ++......+ + ++|+.|+++++ .++..
T Consensus 395 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~l----~-~~L~~L~L~~N-~l~~i 465 (562)
T 3a79_B 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCA--WAESILVLNLSSNM-LTGSVFRCL----P-PKVKVLDLHNN-RIMSI 465 (562)
T ss_dssp HHHTTTTCTTCCEEECTTSCCBSCCSSCCCC--CCTTCCEEECCSSC-CCGGGGSSC----C-TTCSEEECCSS-CCCCC
T ss_pred chhhhcCCCCCCEEECCCCcCCCccChhhhc--CcccCCEEECCCCC-CCcchhhhh----c-CcCCEEECCCC-cCccc
Confidence 23457899999999999998765 2222222 47899999999975 653222211 1 69999999994 66621
Q ss_pred HHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHH
Q 008973 392 GILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 453 (547)
Q Consensus 392 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 453 (547)
.. .+. .+++|+.|++++| .++......+. .+++|+.|++++|+...+...
T Consensus 466 p~-~~~-~l~~L~~L~L~~N-~l~~l~~~~~~---------~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 466 PK-DVT-HLQALQELNVASN-QLKSVPDGVFD---------RLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CT-TTT-SSCCCSEEECCSS-CCCCCCTTSTT---------TCTTCCCEECCSCCBCCCHHH
T ss_pred Ch-hhc-CCCCCCEEECCCC-CCCCCCHHHHh---------cCCCCCEEEecCCCcCCCcch
Confidence 11 112 6899999999999 56532211111 789999999999984433333
No 41
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=2.6e-20 Score=195.27 Aligned_cols=303 Identities=10% Similarity=0.022 Sum_probs=186.0
Q ss_pred CCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccch-hhhhhh------ccCCCcceEEcccccc
Q 008973 125 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTN-SGLQQI------NQHGKLKHLSLIRSQE 197 (547)
Q Consensus 125 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l------~~~~~L~~L~l~~~~~ 197 (547)
.+++|++|+++.+.+.......+ ..+++|++|++++|.. ++. .....+ ..+++|++|+++++
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~--------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-- 315 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRG--------ISGEQLKDDWQALADAPVGEKIQIIYIGYN-- 315 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTT--------SCHHHHHHHHHHHHHSGGGGTCCEEECCSS--
T ss_pred ccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCC--------CccccchHHHHhhhccccCCCCCEEECCCC--
Confidence 68889999999776654333322 3688999999998731 332 111222 34588999998642
Q ss_pred cccccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCC-ccEE
Q 008973 198 FLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLS-LTHV 276 (547)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L 276 (547)
....++.. .....+++|+.|+++++ .+... +. .+..+++|+.|+++++. ++ .+...+..+++ |++|
T Consensus 316 ----~l~~ip~~---~~l~~l~~L~~L~L~~N-~l~g~-ip-~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 316 ----NLKTFPVE---TSLQKMKKLGMLECLYN-QLEGK-LP-AFGSEIKLASLNLAYNQ-IT--EIPANFCGFTEQVENL 382 (636)
T ss_dssp ----CCSSCCCH---HHHTTCTTCCEEECCSC-CCEEE-CC-CCEEEEEESEEECCSSE-EE--ECCTTSEEECTTCCEE
T ss_pred ----cCCccCch---hhhccCCCCCEEeCcCC-cCccc-hh-hhCCCCCCCEEECCCCc-cc--cccHhhhhhcccCcEE
Confidence 12233320 02255788999999885 44311 11 24557889999998853 33 11122345567 9999
Q ss_pred EccCCCCCCHHHHHHhhc--CCCCCEEeCCCCCCCChHHHHhhh-------CCCCccEEEecCccCChHhHHHHHHhcCC
Q 008973 277 CLRWCNLLTNHAIKSLAS--NTGIKVLDLRDCKNLGDEALRAIS-------SLPQLKILLLDGSDISDVGVSYLRLTVIT 347 (547)
Q Consensus 277 ~l~~~~~l~~~~~~~l~~--~~~L~~L~l~~~~~l~~~~~~~l~-------~~~~L~~L~l~~~~l~~~~l~~l~~~~~~ 347 (547)
+++++ .+...+ ..+.. +++|+.|++++| .+.......+. .+++|+.|++++|.++......+. .++
T Consensus 383 ~Ls~N-~l~~lp-~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~--~l~ 457 (636)
T 4eco_A 383 SFAHN-KLKYIP-NIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS--TGS 457 (636)
T ss_dssp ECCSS-CCSSCC-SCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH--TTC
T ss_pred EccCC-cCcccc-hhhhhcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc--cCC
Confidence 99984 444221 12222 448999999988 66654444455 678999999999988754333333 388
Q ss_pred CccEEEeCCCCCCcHHHHHHHhccC-----CCCCccEEecCCCCCCCHHHHHHHH-hcCCCCcEEeccCCCCCCHHHHHH
Q 008973 348 SLVKLSLRGCKRLTDKCISALFDGT-----SKLQLQELDLSNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIA 421 (547)
Q Consensus 348 ~L~~L~l~~~~~~~~~~~~~l~~~~-----~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~l~~~~~~~ 421 (547)
+|+.|+++++. ++..... ..... .+++|+.|++++ +.++... ..+. ..+++|+.|++++| .++. +..
T Consensus 458 ~L~~L~Ls~N~-l~~i~~~-~~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp-~~~~~~~l~~L~~L~Ls~N-~l~~--ip~ 530 (636)
T 4eco_A 458 PLSSINLMGNM-LTEIPKN-SLKDENENFKNTYLLTSIDLRF-NKLTKLS-DDFRATTLPYLVGIDLSYN-SFSK--FPT 530 (636)
T ss_dssp CCSEEECCSSC-CSBCCSS-SSEETTEECTTGGGCCEEECCS-SCCCBCC-GGGSTTTCTTCCEEECCSS-CCSS--CCC
T ss_pred CCCEEECCCCC-CCCcCHH-HhccccccccccCCccEEECcC-CcCCccC-hhhhhccCCCcCEEECCCC-CCCC--cCh
Confidence 99999999864 5411100 11100 012899999999 4666211 1111 26889999999999 5654 211
Q ss_pred HHhccccCccccCCCccEEecCCCC-----CCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 422 LASMLVDDDRWYGSSIRLLDLYNCG-----GITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 422 l~~~~~~~~~~~~~~L~~L~l~~~~-----~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
-.. .+++|+.|+|++|+ .+.......+.. +++|+.|++++|.
T Consensus 531 ~~~--------~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 531 QPL--------NSSTLKGFGIRNQRDAQGNRTLREWPEGITL--CPSLTQLQIGSND 577 (636)
T ss_dssp GGG--------GCSSCCEEECCSCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSC
T ss_pred hhh--------cCCCCCEEECCCCcccccCcccccChHHHhc--CCCCCEEECCCCc
Confidence 111 78999999996543 133222233443 8999999999996
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.74 E-value=1.5e-19 Score=183.63 Aligned_cols=290 Identities=17% Similarity=0.126 Sum_probs=161.2
Q ss_pred CCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccccc
Q 008973 123 PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITY 202 (547)
Q Consensus 123 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 202 (547)
+..+++|++|+|+.+.+.......+ ..+++|++|+|++|. ++......+..+++|++|+++++ .
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n------~ 115 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNR---------LKLIPLGVFTGLSNLTKLDISEN------K 115 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC---------CCSCCTTSSTTCTTCCEEECTTS------C
T ss_pred ccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCc---------CCccCcccccCCCCCCEEECCCC------c
Confidence 4456777777777666655322222 256777777777763 22222223456677777777542 1
Q ss_pred ccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCC
Q 008973 203 FRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 282 (547)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 282 (547)
...+....+ ..+++|++|+++++ .+..... ..+..+++|+.|++++| .++.... ..+..+++|+.|+++++
T Consensus 116 i~~~~~~~~----~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~l~~l~~L~~L~l~~n- 186 (477)
T 2id5_A 116 IVILLDYMF----QDLYNLKSLEVGDN-DLVYISH-RAFSGLNSLEQLTLEKC-NLTSIPT-EALSHLHGLIVLRLRHL- 186 (477)
T ss_dssp CCEECTTTT----TTCTTCCEEEECCT-TCCEECT-TSSTTCTTCCEEEEESC-CCSSCCH-HHHTTCTTCCEEEEESC-
T ss_pred cccCChhHc----cccccCCEEECCCC-ccceeCh-hhccCCCCCCEEECCCC-cCcccCh-hHhcccCCCcEEeCCCC-
Confidence 222221111 34677777777774 3332211 12345677788877775 3332222 22345677888888773
Q ss_pred CCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcH
Q 008973 283 LLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD 362 (547)
Q Consensus 283 ~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~ 362 (547)
.+.......+..+++|+.|++++|..+.... .......+|+.|++++|.++......+.. +++|+.|+++++. ++.
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~-l~~ 262 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNLTSLSITHCNLTAVPYLAVRH--LVYLRFLNLSYNP-IST 262 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEEC-TTTTTTCCCSEEEEESSCCCSCCHHHHTT--CTTCCEEECCSSC-CCE
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccC-cccccCccccEEECcCCcccccCHHHhcC--ccccCeeECCCCc-CCc
Confidence 4443333345567788888887764333322 22223457888888888777655544544 7788888887754 432
Q ss_pred HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEec
Q 008973 363 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 442 (547)
Q Consensus 363 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 442 (547)
.....+ ..+++|+.|++++ +.++......+ ..+++|+.|++++| .++......+. .+++|+.|+|
T Consensus 263 ~~~~~~---~~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~l 327 (477)
T 2id5_A 263 IEGSML---HELLRLQEIQLVG-GQLAVVEPYAF-RGLNYLRVLNVSGN-QLTTLEESVFH---------SVGNLETLIL 327 (477)
T ss_dssp ECTTSC---TTCTTCCEEECCS-SCCSEECTTTB-TTCTTCCEEECCSS-CCSCCCGGGBS---------CGGGCCEEEC
T ss_pred cChhhc---cccccCCEEECCC-CccceECHHHh-cCcccCCEEECCCC-cCceeCHhHcC---------CCcccCEEEc
Confidence 111111 1227788888887 35543211111 25778888888887 45432221111 5677888888
Q ss_pred CCCCCCCHHHHHHh
Q 008973 443 YNCGGITQLAFRWL 456 (547)
Q Consensus 443 ~~~~~i~~~~~~~l 456 (547)
++|+...+..+.++
T Consensus 328 ~~N~l~c~c~~~~~ 341 (477)
T 2id5_A 328 DSNPLACDCRLLWV 341 (477)
T ss_dssp CSSCEECSGGGHHH
T ss_pred cCCCccCccchHhH
Confidence 88873333333333
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=3.7e-18 Score=177.81 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=19.7
Q ss_pred cCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecccc
Q 008973 28 KCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFD 71 (547)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 71 (547)
.+++++.+++.+. .++... ..++..+++|++|+|+++
T Consensus 49 ~l~~l~~l~l~~~------~l~~lp-~~~~~~l~~L~~L~L~~n 85 (597)
T 3oja_B 49 TLNNQKIVTFKNS------TMRKLP-AALLDSFRQVELLNLNDL 85 (597)
T ss_dssp GGCCCSEEEESSC------EESEEC-THHHHHCCCCSEEECTTS
T ss_pred cCCCceEEEeeCC------CCCCcC-HHHHccCCCCcEEECCCC
Confidence 3566777777642 222111 133455777777777654
No 44
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=4.2e-19 Score=189.39 Aligned_cols=300 Identities=10% Similarity=0.049 Sum_probs=185.9
Q ss_pred CCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccch----hhhh----hhccCCCcceEEccccc
Q 008973 125 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTN----SGLQ----QINQHGKLKHLSLIRSQ 196 (547)
Q Consensus 125 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~l~----~l~~~~~L~~L~l~~~~ 196 (547)
.+++|++|+|+.|.+....... ...+++|+.|++++|.. ++. ..+. .+..+++|++|+++++
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~--------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N- 558 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRG--------ISAAQLKADWTRLADDEDTGPKIQIFYMGYN- 558 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTT--------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-
T ss_pred cCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCC--------cccccchHHHHhhhhcccccCCccEEEeeCC-
Confidence 6889999999977655433332 34789999999999841 222 1122 2336679999999652
Q ss_pred ccccccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCC-ccE
Q 008973 197 EFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLS-LTH 275 (547)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~ 275 (547)
....++.. .....+++|+.|+++++ .+. .+. .+..+++|+.|++++|. ++ .+...+..+++ |+.
T Consensus 559 -----~L~~ip~~---~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 559 -----NLEEFPAS---ASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp -----CCCBCCCH---HHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSSC-CS--CCCTTSCEECTTCCE
T ss_pred -----cCCccCCh---hhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCCc-cc--cchHHHhhccccCCE
Confidence 22233320 02256889999999985 555 222 35567899999999864 43 22222345567 999
Q ss_pred EEccCCCCCCHHHHHHhhc--CCCCCEEeCCCCCCCChHHH---Hhhh--CCCCccEEEecCccCChHhHHHHHHhcCCC
Q 008973 276 VCLRWCNLLTNHAIKSLAS--NTGIKVLDLRDCKNLGDEAL---RAIS--SLPQLKILLLDGSDISDVGVSYLRLTVITS 348 (547)
Q Consensus 276 L~l~~~~~l~~~~~~~l~~--~~~L~~L~l~~~~~l~~~~~---~~l~--~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~ 348 (547)
|+++++ .+...+ ..+.. .++|+.|++++| .+..... ..+. .+++|+.|++++|.++......+. .+++
T Consensus 624 L~Ls~N-~L~~lp-~~~~~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~--~l~~ 698 (876)
T 4ecn_A 624 LGFSHN-KLKYIP-NIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA--TGSP 698 (876)
T ss_dssp EECCSS-CCCSCC-SCCCTTCSSCEEEEECCSS-CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHH--TTCC
T ss_pred EECcCC-CCCcCc-hhhhccccCCCCEEECcCC-cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHc--cCCC
Confidence 999985 444221 12222 345999999988 5543211 1112 456899999999988754433333 4899
Q ss_pred ccEEEeCCCCCCcHHHHHH-HhccC-----CCCCccEEecCCCCCCCHHHHHHHH--hcCCCCcEEeccCCCCCCHHHHH
Q 008973 349 LVKLSLRGCKRLTDKCISA-LFDGT-----SKLQLQELDLSNLPHLSDNGILTLA--TCRVPISELRVRQCPLIGDTSVI 420 (547)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~-l~~~~-----~~~~L~~L~l~~~~~l~~~~~~~l~--~~~~~L~~L~l~~~~~l~~~~~~ 420 (547)
|+.|+++++. ++. +.. ..... .+++|+.|++++| .++. +.... ..+++|+.|++++| .++. +
T Consensus 699 L~~L~Ls~N~-L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~--lp~~l~~~~l~~L~~L~Ls~N-~L~~--l- 768 (876)
T 4ecn_A 699 ISTIILSNNL-MTS--IPENSLKPKDGNYKNTYLLTTIDLRFN-KLTS--LSDDFRATTLPYLSNMDVSYN-CFSS--F- 768 (876)
T ss_dssp CSEEECCSCC-CSC--CCTTSSSCTTSCCTTGGGCCEEECCSS-CCCC--CCGGGSTTTCTTCCEEECCSS-CCSS--C-
T ss_pred CCEEECCCCc-CCc--cChHHhccccccccccCCccEEECCCC-CCcc--chHHhhhccCCCcCEEEeCCC-CCCc--c-
Confidence 9999999864 541 111 11000 1138999999995 6652 21112 25789999999999 5654 2
Q ss_pred HHHhccccCccccCCCccEEecCCCC-----CCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 421 ALASMLVDDDRWYGSSIRLLDLYNCG-----GITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 421 ~l~~~~~~~~~~~~~~L~~L~l~~~~-----~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
...+. .+++|+.|+|++|+ .+.......+.. +++|+.|++++|.
T Consensus 769 --p~~l~-----~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~--L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 769 --PTQPL-----NSSQLKAFGIRHQRDAEGNRILRQWPTGITT--CPSLIQLQIGSND 817 (876)
T ss_dssp --CCGGG-----GCTTCCEEECCCCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSC
T ss_pred --chhhh-----cCCCCCEEECCCCCCcccccccccChHHHhc--CCCCCEEECCCCC
Confidence 11111 78999999998743 133222233443 8999999999996
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=4.1e-18 Score=177.51 Aligned_cols=316 Identities=17% Similarity=0.141 Sum_probs=202.9
Q ss_pred CCccceeecccccc-cccchhHHHHHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccC
Q 008973 60 CPQLEALILMFDIS-LFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDY 138 (547)
Q Consensus 60 ~~~L~~L~L~~~~~-~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 138 (547)
+++++.|+++.+.. .++...+..+ ++|+.|+++.......... .+..+++|++|+|+++.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l-----~~L~~L~L~~n~l~~~~~~--------------~~~~l~~L~~L~L~~n~ 110 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSF-----RQVELLNLNDLQIEEIDTY--------------AFAYAHTIQKLYMGFNA 110 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHC-----CCCSEEECTTSCCCEECTT--------------TTTTCTTCCEEECCSSC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccC-----CCCcEEECCCCCCCCCChH--------------HhcCCCCCCEEECCCCc
Confidence 56788888775443 2233333333 7888888886543222110 15668899999999887
Q ss_pred CChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcC
Q 008973 139 ITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKC 218 (547)
Q Consensus 139 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (547)
+...... .+..+++|++|+|++|. ++......+..+++|++|+++++ ....+....+ ..+
T Consensus 111 l~~~~~~-~~~~l~~L~~L~L~~n~---------l~~l~~~~~~~l~~L~~L~Ls~N------~l~~~~~~~~----~~l 170 (597)
T 3oja_B 111 IRYLPPH-VFQNVPLLTVLVLERND---------LSSLPRGIFHNTPKLTTLSMSNN------NLERIEDDTF----QAT 170 (597)
T ss_dssp CCCCCTT-TTTTCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSS------CCCBCCTTTT----TTC
T ss_pred CCCCCHH-HHcCCCCCCEEEeeCCC---------CCCCCHHHhccCCCCCEEEeeCC------cCCCCChhhh----hcC
Confidence 7664332 22478899999999974 33222223567889999999653 2223332222 457
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCC
Q 008973 219 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 298 (547)
Q Consensus 219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 298 (547)
++|+.|+++++ .+.... ...+++|+.|+++++ .++. ....++|+.|+++++ .+..... ...++|
T Consensus 171 ~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n-~l~~------l~~~~~L~~L~ls~n-~l~~~~~---~~~~~L 234 (597)
T 3oja_B 171 TSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYN-LLST------LAIPIAVEELDASHN-SINVVRG---PVNVEL 234 (597)
T ss_dssp TTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSS-CCSE------EECCTTCSEEECCSS-CCCEEEC---SCCSCC
T ss_pred CcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccC-cccc------ccCCchhheeeccCC-ccccccc---ccCCCC
Confidence 89999999985 554432 345789999999875 3332 124568999999884 4432211 134689
Q ss_pred CEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCcc
Q 008973 299 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQ 378 (547)
Q Consensus 299 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~ 378 (547)
+.|++++| .++. ...+..+++|+.|++++|.++......+.. +++|+.|+++++. ++.. ... ...+++|+
T Consensus 235 ~~L~L~~n-~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~Ls~N~-l~~l--~~~--~~~l~~L~ 304 (597)
T 3oja_B 235 TILKLQHN-NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK--MQRLERLYISNNR-LVAL--NLY--GQPIPTLK 304 (597)
T ss_dssp CEEECCSS-CCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT--CSSCCEEECTTSC-CCEE--ECS--SSCCTTCC
T ss_pred CEEECCCC-CCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC--ccCCCEEECCCCC-CCCC--Ccc--cccCCCCc
Confidence 99999988 5665 356778999999999999887665555555 8899999999864 4421 111 12348899
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhh
Q 008973 379 ELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLK 457 (547)
Q Consensus 379 ~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~ 457 (547)
.|++++| .++.... .+ ..+++|+.|++++|. ++... .. .+++|+.|+|++|+ ++......+.
T Consensus 305 ~L~Ls~N-~l~~i~~-~~-~~l~~L~~L~L~~N~-l~~~~----~~--------~~~~L~~L~l~~N~-~~~~~~~~~~ 366 (597)
T 3oja_B 305 VLDLSHN-HLLHVER-NQ-PQFDRLENLYLDHNS-IVTLK----LS--------THHTLKNLTLSHND-WDCNSLRALF 366 (597)
T ss_dssp EEECCSS-CCCCCGG-GH-HHHTTCSEEECCSSC-CCCCC----CC--------TTCCCSEEECCSSC-EEHHHHHHHT
T ss_pred EEECCCC-CCCccCc-cc-ccCCCCCEEECCCCC-CCCcC----hh--------hcCCCCEEEeeCCC-CCChhHHHHH
Confidence 9999985 5542111 11 257889999999984 54332 11 77889999999998 6655554443
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=1.4e-19 Score=190.87 Aligned_cols=160 Identities=18% Similarity=0.131 Sum_probs=96.7
Q ss_pred cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCC
Q 008973 294 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 373 (547)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 373 (547)
.+++|+.+++..+..........+..+++++.++++.|.+.......+. .++.|+.|+++++...... ..... ..
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~--~~~~L~~L~Ls~N~~~~~~-~~~~~--~~ 492 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENF-LPDIF--TE 492 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGE-ECSCC--TT
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccc--cchhhhhhhhhhccccccc-Cchhh--hh
Confidence 4566666666655333222334455778888888888765543333233 3778888888876422210 00111 12
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHH
Q 008973 374 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 453 (547)
Q Consensus 374 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 453 (547)
+++|++|++++| .++...... ...+++|+.|+|++| .++......+. .+++|+.|+|++|. ++....
T Consensus 493 l~~L~~L~Ls~N-~L~~l~~~~-f~~l~~L~~L~Ls~N-~l~~l~~~~~~---------~l~~L~~L~Ls~N~-l~~~~~ 559 (635)
T 4g8a_A 493 LRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMSHN-NFFSLDTFPYK---------CLNSLQVLDYSLNH-IMTSKK 559 (635)
T ss_dssp CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCBCCCGGGT---------TCTTCCEEECTTSC-CCBCCS
T ss_pred ccccCEEECCCC-ccCCcChHH-HcCCCCCCEEECCCC-cCCCCChhHHh---------CCCCCCEEECCCCc-CCCCCH
Confidence 378999999984 565321111 126889999999988 55543222222 67889999999987 665433
Q ss_pred HHhhCCCC-CCCcEEEeeCCC
Q 008973 454 RWLKKPYF-PRLRWLGVTGSV 473 (547)
Q Consensus 454 ~~l~~~~~-~~L~~L~l~~~~ 473 (547)
..+.. + ++|+.|++++|+
T Consensus 560 ~~l~~--l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 560 QELQH--FPSSLAFLNLTQND 578 (635)
T ss_dssp SCTTC--CCTTCCEEECTTCC
T ss_pred HHHHh--hhCcCCEEEeeCCC
Confidence 34433 4 589999998876
No 47
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=3.1e-16 Score=152.77 Aligned_cols=146 Identities=19% Similarity=0.187 Sum_probs=71.7
Q ss_pred CCCCEEeCCCCCCCChHHHHhh----hCCC-CccEEEecCccCChHhHHHHHH--hcC-CCccEEEeCCCCCCcHHHHHH
Q 008973 296 TGIKVLDLRDCKNLGDEALRAI----SSLP-QLKILLLDGSDISDVGVSYLRL--TVI-TSLVKLSLRGCKRLTDKCISA 367 (547)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~~~l----~~~~-~L~~L~l~~~~l~~~~l~~l~~--~~~-~~L~~L~l~~~~~~~~~~~~~ 367 (547)
++|++|++++| .+++.+...+ ..++ +|++|++++|.+++.+...+.. ..+ ++|+.|++++|. +++.+...
T Consensus 138 ~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~ 215 (362)
T 3goz_A 138 ASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAE 215 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHH
Confidence 45666666655 4443332222 2333 6666666666555444433322 023 366666666643 44432222
Q ss_pred Hhcc--CCCCCccEEecCCCCCCCHHHH---HHHHhcCCCCcEEeccCCC--CCCHHHHHHHHhccccCccccCCCccEE
Q 008973 368 LFDG--TSKLQLQELDLSNLPHLSDNGI---LTLATCRVPISELRVRQCP--LIGDTSVIALASMLVDDDRWYGSSIRLL 440 (547)
Q Consensus 368 l~~~--~~~~~L~~L~l~~~~~l~~~~~---~~l~~~~~~L~~L~l~~~~--~l~~~~~~~l~~~~~~~~~~~~~~L~~L 440 (547)
++.. ...++|++|++++ +.+++.+. ..+...+++|+.|++++|. .+++.++..+..... .+++|+.|
T Consensus 216 l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~-----~l~~L~~L 289 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCL-NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP-----NIQKIILV 289 (362)
T ss_dssp HHHHHHHSCTTCCEEECCS-SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST-----TCCEEEEE
T ss_pred HHHHHhcCCCCceEEECcC-CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc-----cCCceEEE
Confidence 2211 0014666666666 35544322 2233345666666666662 255555555555433 55566666
Q ss_pred ecCCCCCCCH
Q 008973 441 DLYNCGGITQ 450 (547)
Q Consensus 441 ~l~~~~~i~~ 450 (547)
++++|. +.+
T Consensus 290 dL~~N~-l~~ 298 (362)
T 3goz_A 290 DKNGKE-IHP 298 (362)
T ss_dssp CTTSCB-CCG
T ss_pred ecCCCc-CCC
Confidence 666665 443
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=8.9e-18 Score=163.29 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=42.5
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 399 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 399 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.++.++.++++++ .+++.++..+...+. .+++|+.|++++|. ++......+. .+++|+.|++++|+
T Consensus 247 ~~~~l~~l~L~~~-~l~~~~l~~l~~~l~-----~l~~L~~L~Ls~N~-l~~i~~~~~~--~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 247 TNSLIKKFTFRNV-KITDESLFQVMKLLN-----QISGLLELEFSRNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCCEEEEESC-BCCHHHHHHHHHHHH-----TCTTCCEEECCSSC-CCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ccchhhccccccc-cccCcchhhhHHHHh-----cccCCCEEECCCCC-CCccCHHHHh--cCCCCCEEEeeCCC
Confidence 3566777777777 577766555543332 67778888888876 6633222233 37788888888876
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=6.3e-18 Score=162.80 Aligned_cols=199 Identities=17% Similarity=0.162 Sum_probs=107.3
Q ss_pred CCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccc
Q 008973 126 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 205 (547)
Q Consensus 126 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 205 (547)
.++++.|+++++.++......+ ..+++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~------l~~ 114 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNK---------ISKISPGAFAPLVKLERLYLSKNQ------LKE 114 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSSC------CSB
T ss_pred CCCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCCc---------CCeeCHHHhcCCCCCCEEECCCCc------CCc
Confidence 3678888888776665332222 367888888888863 333223445677888888885421 222
Q ss_pred cChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHH-HHHHHHhcCCCccEEEccCCCCC
Q 008973 206 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDL-VFHDISATSLSLTHVCLRWCNLL 284 (547)
Q Consensus 206 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l 284 (547)
++. ...++|++|+++++ .+... ....+..+++|+.|+++++. ++.. .....+..+++|+.|+++++ .+
T Consensus 115 l~~-------~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n-~l 183 (330)
T 1xku_A 115 LPE-------KMPKTLQELRVHEN-EITKV-RKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADT-NI 183 (330)
T ss_dssp CCS-------SCCTTCCEEECCSS-CCCBB-CHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSS-CC
T ss_pred cCh-------hhcccccEEECCCC-ccccc-CHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCC-cc
Confidence 221 12357778877774 44432 12234557777777777643 2211 11112334566666666663 33
Q ss_pred CHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCC
Q 008973 285 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 285 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 357 (547)
...+. ...++|++|++++| .+.......+..+++|+.|++++|.++......+.. +++|+.|+++++
T Consensus 184 ~~l~~---~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N 250 (330)
T 1xku_A 184 TTIPQ---GLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--TPHLRELHLNNN 250 (330)
T ss_dssp CSCCS---SCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--STTCCEEECCSS
T ss_pred ccCCc---cccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--CCCCCEEECCCC
Confidence 22111 01256666666666 455544455556666666666666555433323333 555666665554
No 50
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=7.5e-16 Score=150.07 Aligned_cols=267 Identities=18% Similarity=0.115 Sum_probs=162.6
Q ss_pred EeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhh----hhhccCC-CcceEEcccccccccccccccC
Q 008973 133 CLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGL----QQINQHG-KLKHLSLIRSQEFLITYFRRVN 207 (547)
Q Consensus 133 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~ 207 (547)
.++.+.+... +..+....++|++|++++| .+++.+. ..+..++ +|++|+++++ ......
T Consensus 4 ~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n---------~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N------~l~~~~ 67 (362)
T 3goz_A 4 KLTLHPGSNP-VEEFTSIPHGVTSLDLSLN---------NLYSISTVELIQAFANTPASVTSLNLSGN------SLGFKN 67 (362)
T ss_dssp ECCCCTTCCH-HHHHHTSCTTCCEEECTTS---------CGGGSCHHHHHHHHHTCCTTCCEEECCSS------CGGGSC
T ss_pred ccccccchHH-HHHHHhCCCCceEEEccCC---------CCChHHHHHHHHHHHhCCCceeEEECcCC------CCCHHH
Confidence 3444555432 3333334455888888876 3444333 4455666 7888887542 122233
Q ss_pred hHHHHHHHHcC-CCCcEEEEcCCCCCCH---HHHHHHHHcC-CCCcEEEecCCCCCCHHHHHHH---Hhc-CCCccEEEc
Q 008973 208 DLGILLMADKC-ASMESICLGGFCRVTD---TGFKTILHSC-SNLYKLRVSHGTQLTDLVFHDI---SAT-SLSLTHVCL 278 (547)
Q Consensus 208 ~~~~~~l~~~~-~~L~~L~l~~~~~~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~---~~~-~~~L~~L~l 278 (547)
...+....... ++|++|++++| .+++ ..+...+..+ ++|+.|++++|. +++.+...+ ... +++|++|++
T Consensus 68 ~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 68 SDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNL 145 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEEC
T ss_pred HHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEc
Confidence 33333333333 78888888885 4443 3344445555 788889888864 444433333 333 468999999
Q ss_pred cCCCCCCHHHHH----HhhcCC-CCCEEeCCCCCCCChHHHHhh----hCC-CCccEEEecCccCChHhHHHHHH---hc
Q 008973 279 RWCNLLTNHAIK----SLASNT-GIKVLDLRDCKNLGDEALRAI----SSL-PQLKILLLDGSDISDVGVSYLRL---TV 345 (547)
Q Consensus 279 ~~~~~l~~~~~~----~l~~~~-~L~~L~l~~~~~l~~~~~~~l----~~~-~~L~~L~l~~~~l~~~~l~~l~~---~~ 345 (547)
+++ .+++.+.. .+...+ +|++|++++| .+++.+...+ ..+ ++|++|++++|.+++.+...+.. ..
T Consensus 146 s~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 146 RGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223 (362)
T ss_dssp TTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred cCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence 884 55543332 334455 8999999988 6766554433 355 59999999999888766554433 12
Q ss_pred CCCccEEEeCCCCCCcHHHHHHHhcc-CCCCCccEEecCCCC--CCCHHHHHHHHhc---CCCCcEEeccCCCCCCHHHH
Q 008973 346 ITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLP--HLSDNGILTLATC---RVPISELRVRQCPLIGDTSV 419 (547)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~l~~~-~~~~~L~~L~l~~~~--~l~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~ 419 (547)
.++|+.|+++++. +++.+...+... ..+++|++|++++|. .+++.++..+... +++|+.|++++| .+.+...
T Consensus 224 ~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~~~ 301 (362)
T 3goz_A 224 PNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPSHS 301 (362)
T ss_dssp CTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGGGC
T ss_pred CCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCcch
Confidence 4689999999864 765444333221 223789999999853 4777777766654 456778899988 5666533
Q ss_pred HH
Q 008973 420 IA 421 (547)
Q Consensus 420 ~~ 421 (547)
..
T Consensus 302 ~~ 303 (362)
T 3goz_A 302 IP 303 (362)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.67 E-value=5.7e-17 Score=162.36 Aligned_cols=354 Identities=16% Similarity=0.113 Sum_probs=165.7
Q ss_pred CCcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchh---hH--HHH-HhcCCccceeecccccccc
Q 008973 2 LRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHIS---DL--EEL-LNGCPQLEALILMFDISLF 75 (547)
Q Consensus 2 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~---~l--~~~-~~~~~~L~~L~L~~~~~~~ 75 (547)
...+|++|.++++. + ......+ .++++|++|+++++...+....... .+ ..+ -...+++++|+++.+....
T Consensus 9 ~~~~L~~L~l~~n~-l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSN-L-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred ccccchhhhcccCc-h-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 35678899998876 6 3223344 5899999999985432111100000 00 000 0011345667766443211
Q ss_pred cchhHHHHHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCcc
Q 008973 76 LRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLT 155 (547)
Q Consensus 76 ~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 155 (547)
-+ ..+++|+.|+++....... ....++|++|+++.+.+..- ....++|+
T Consensus 86 lp--------~~~~~L~~L~l~~n~l~~l------------------p~~~~~L~~L~l~~n~l~~l-----~~~~~~L~ 134 (454)
T 1jl5_A 86 LP--------ELPPHLESLVASCNSLTEL------------------PELPQSLKSLLVDNNNLKAL-----SDLPPLLE 134 (454)
T ss_dssp CC--------SCCTTCSEEECCSSCCSSC------------------CCCCTTCCEEECCSSCCSCC-----CSCCTTCC
T ss_pred CC--------CCcCCCCEEEccCCcCCcc------------------ccccCCCcEEECCCCccCcc-----cCCCCCCC
Confidence 00 0235677777765322211 11246778888877666541 11225788
Q ss_pred EEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHH
Q 008973 156 HLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDT 235 (547)
Q Consensus 156 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 235 (547)
+|++++|. ++. ++.++.+++|++|+++++. ...++ ...++|++|+++++ .+...
T Consensus 135 ~L~L~~n~---------l~~--lp~~~~l~~L~~L~l~~N~------l~~lp--------~~~~~L~~L~L~~n-~l~~l 188 (454)
T 1jl5_A 135 YLGVSNNQ---------LEK--LPELQNSSFLKIIDVDNNS------LKKLP--------DLPPSLEFIAAGNN-QLEEL 188 (454)
T ss_dssp EEECCSSC---------CSS--CCCCTTCTTCCEEECCSSC------CSCCC--------CCCTTCCEEECCSS-CCSSC
T ss_pred EEECcCCC---------CCC--CcccCCCCCCCEEECCCCc------CcccC--------CCcccccEEECcCC-cCCcC
Confidence 88888763 221 2346677888888885421 11221 12347888888774 44331
Q ss_pred HHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHH
Q 008973 236 GFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALR 315 (547)
Q Consensus 236 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~ 315 (547)
.. +..+++|+.|++++|. ++. +....++|++|+++++ .+... ..+..+++|+.|++++| .+....
T Consensus 189 --~~-~~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n-~l~~l--p~~~~l~~L~~L~l~~N-~l~~l~-- 253 (454)
T 1jl5_A 189 --PE-LQNLPFLTAIYADNNS-LKK-----LPDLPLSLESIVAGNN-ILEEL--PELQNLPFLTTIYADNN-LLKTLP-- 253 (454)
T ss_dssp --CC-CTTCTTCCEEECCSSC-CSS-----CCCCCTTCCEEECCSS-CCSSC--CCCTTCTTCCEEECCSS-CCSSCC--
T ss_pred --cc-ccCCCCCCEEECCCCc-CCc-----CCCCcCcccEEECcCC-cCCcc--cccCCCCCCCEEECCCC-cCCccc--
Confidence 11 4557778888887753 221 1122347788888774 44322 23556777888887776 444311
Q ss_pred hhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHH
Q 008973 316 AISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILT 395 (547)
Q Consensus 316 ~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~ 395 (547)
...++|+.|++++|.++... . ..++|+.|+++++. ++. +.... ++|+.|+++++ .++..
T Consensus 254 --~~~~~L~~L~l~~N~l~~l~-----~-~~~~L~~L~ls~N~-l~~-----l~~~~--~~L~~L~l~~N-~l~~i---- 312 (454)
T 1jl5_A 254 --DLPPSLEALNVRDNYLTDLP-----E-LPQSLTFLDVSENI-FSG-----LSELP--PNLYYLNASSN-EIRSL---- 312 (454)
T ss_dssp --SCCTTCCEEECCSSCCSCCC-----C-CCTTCCEEECCSSC-CSE-----ESCCC--TTCCEEECCSS-CCSEE----
T ss_pred --ccccccCEEECCCCcccccC-----c-ccCcCCEEECcCCc-cCc-----ccCcC--CcCCEEECcCC-cCCcc----
Confidence 12467777777777655411 1 24567777776653 322 00011 46666666663 44320
Q ss_pred HHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 396 LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 396 l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
....++|+.|++++| .++. +.. .+++|+.|++++|. ++. +.. .+++|+.|++++|.
T Consensus 313 -~~~~~~L~~L~Ls~N-~l~~-----lp~--------~~~~L~~L~L~~N~-l~~-----lp~-~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 313 -CDLPPSLEELNVSNN-KLIE-----LPA--------LPPRLERLIASFNH-LAE-----VPE-LPQNLKQLHVEYNP 368 (454)
T ss_dssp -CCCCTTCCEEECCSS-CCSC-----CCC--------CCTTCCEEECCSSC-CSC-----CCC-CCTTCCEEECCSSC
T ss_pred -cCCcCcCCEEECCCC-cccc-----ccc--------cCCcCCEEECCCCc-ccc-----ccc-hhhhccEEECCCCC
Confidence 011135666666665 3332 111 34556666666654 431 111 24566666666553
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=6.7e-17 Score=161.95 Aligned_cols=279 Identities=18% Similarity=0.159 Sum_probs=190.6
Q ss_pred CCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccccc
Q 008973 123 PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITY 202 (547)
Q Consensus 123 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 202 (547)
+..+++|++|+++.+.++... ...+++|++|++++|. ++.. .++.+++|++|+++++ .
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~---------l~~~---~~~~l~~L~~L~L~~N------~ 117 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK---------LTNL---DVTPLTKLTYLNCDTN------K 117 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC---------CSCC---CCTTCTTCCEEECCSS------C
T ss_pred hcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC---------Ccee---ecCCCCcCCEEECCCC------c
Confidence 345789999999988777642 3478899999999974 2221 2667899999999652 1
Q ss_pred ccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCC
Q 008973 203 FRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 282 (547)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 282 (547)
...+. ...+++|++|+++++ .+.... +..+++|+.|++++|..+.... ...+++|+.|+++++
T Consensus 118 l~~l~-------~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n- 180 (457)
T 3bz5_A 118 LTKLD-------VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN- 180 (457)
T ss_dssp CSCCC-------CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-
T ss_pred CCeec-------CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-
Confidence 22221 245789999999985 554431 4568999999999976554432 345789999999995
Q ss_pred CCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcH
Q 008973 283 LLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD 362 (547)
Q Consensus 283 ~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~ 362 (547)
.++..+ +..+++|+.|++++| .++.. .+..+++|+.|++++|.++... +. .+++|+.|+++++. ++.
T Consensus 181 ~l~~l~---l~~l~~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~--~l~~L~~L~l~~N~-l~~ 247 (457)
T 3bz5_A 181 KITELD---VSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSNKLTEID---VT--PLTQLTYFDCSVNP-LTE 247 (457)
T ss_dssp CCCCCC---CTTCTTCCEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSC-CSC
T ss_pred ccceec---cccCCCCCEEECcCC-cCCee---ccccCCCCCEEECcCCcccccC---cc--ccCCCCEEEeeCCc-CCC
Confidence 555432 668899999999998 66654 3778999999999999888743 33 48999999999864 543
Q ss_pred HHHHHHhccCCCCCcc----------EEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHH--HHHHhccccCc
Q 008973 363 KCISALFDGTSKLQLQ----------ELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSV--IALASMLVDDD 430 (547)
Q Consensus 363 ~~~~~l~~~~~~~~L~----------~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~--~~l~~~~~~~~ 430 (547)
..... +++|+ .|++++|..+..... ..|++|+.|++++|+.+..... ..+...-.
T Consensus 248 ~~~~~------l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l--- 314 (457)
T 3bz5_A 248 LDVST------LSKLTTLHCIQTDLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQAAGITELDL--- 314 (457)
T ss_dssp CCCTT------CTTCCEEECTTCCCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC---
T ss_pred cCHHH------CCCCCEEeccCCCCCEEECCCCccCCcccc----cccccCCEEECCCCcccceeccCCCcceEech---
Confidence 22111 14444 555555433322211 2579999999999963322110 00000000
Q ss_pred cccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 431 RWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 431 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
..+++|+.|++++|. ++.. .+. .|++|+.|++++|.
T Consensus 315 -~~~~~L~~L~L~~N~-l~~l---~l~--~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 315 -SQNPKLVYLYLNNTE-LTEL---DVS--HNTKLKSLSCVNAH 350 (457)
T ss_dssp -TTCTTCCEEECTTCC-CSCC---CCT--TCTTCSEEECCSSC
T ss_pred -hhcccCCEEECCCCc-cccc---ccc--cCCcCcEEECCCCC
Confidence 177899999999997 7653 244 49999999999986
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.4e-16 Score=154.94 Aligned_cols=282 Identities=14% Similarity=0.090 Sum_probs=192.4
Q ss_pred CCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccccccc
Q 008973 125 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 204 (547)
Q Consensus 125 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 204 (547)
.|+.....+.+++.++.-.. ...++|++|++++|. ++......+..+++|++|+++++ ...
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~----~~~~~L~~L~l~~n~---------i~~~~~~~~~~l~~L~~L~L~~n------~l~ 89 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPS----GLTEAVKSLDLSNNR---------ITYISNSDLQRCVNLQALVLTSN------GIN 89 (353)
T ss_dssp EECTTSEEECCSTTCSSCCT----TCCTTCCEEECTTSC---------CCEECTTTTTTCTTCCEEECTTS------CCC
T ss_pred CCCCCeEeeCCCCCcccccc----cccccCcEEECCCCc---------CcccCHHHhccCCCCCEEECCCC------ccC
Confidence 36666667776766654211 134699999999973 44333345778999999999752 222
Q ss_pred ccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCC
Q 008973 205 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 284 (547)
Q Consensus 205 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 284 (547)
.+....+ ..+++|++|+++++ .+... ....+..+++|++|+++++ .++.......+..+++|++|+++++..+
T Consensus 90 ~~~~~~~----~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 90 TIEEDSF----SSLGSLEHLDLSYN-YLSNL-SSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp EECTTTT----TTCTTCCEEECCSS-CCSSC-CHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred ccCHhhc----CCCCCCCEEECCCC-cCCcC-CHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc
Confidence 3322222 45799999999985 55543 2234667999999999986 3442221113456789999999997556
Q ss_pred CHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHH
Q 008973 285 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 364 (547)
Q Consensus 285 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~ 364 (547)
.......+..+++|+.|++++| .+.......+..+++|++|++++|.++......+.. +++|+.|+++++. ++...
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~L~~n~-l~~~~ 238 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV--TSSVECLELRDTD-LDTFH 238 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH--TTTEEEEEEESCB-CTTCC
T ss_pred cccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhh--cccccEEECCCCc-ccccc
Confidence 5544455678999999999998 677665677889999999999999887655444444 8999999999864 44322
Q ss_pred HHHHhccCCCCCccEEecCCCCCCCHHHHHHH---HhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEe
Q 008973 365 ISALFDGTSKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLD 441 (547)
Q Consensus 365 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~ 441 (547)
...+......+.++.+++.+ ..+++..+..+ ...+++|+.|++++| .++......+ . .+++|+.|+
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~-~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~-~--------~l~~L~~L~ 307 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRN-VKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIF-D--------RLTSLQKIW 307 (353)
T ss_dssp CC------CCCCCCEEEEES-CBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTT-T--------TCTTCCEEE
T ss_pred ccccccccccchhhcccccc-ccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHH-h--------cCCCCCEEE
Confidence 22222111227899999998 57887655443 347899999999999 5663221111 1 789999999
Q ss_pred cCCCCC
Q 008973 442 LYNCGG 447 (547)
Q Consensus 442 l~~~~~ 447 (547)
+++|+.
T Consensus 308 L~~N~~ 313 (353)
T 2z80_A 308 LHTNPW 313 (353)
T ss_dssp CCSSCB
T ss_pred eeCCCc
Confidence 999983
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.61 E-value=5.6e-17 Score=156.11 Aligned_cols=294 Identities=15% Similarity=0.091 Sum_probs=166.0
Q ss_pred CccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccC
Q 008973 128 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 207 (547)
Q Consensus 128 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 207 (547)
+++.++++.+.++.-.. ...++++.|++++|. ++......+..+++|++|+++++ ....+.
T Consensus 32 ~l~~l~~~~~~l~~lp~----~~~~~l~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~ 92 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK----DLPPDTALLDLQNNK---------ITEIKDGDFKNLKNLHTLILINN------KISKIS 92 (330)
T ss_dssp ETTEEECTTSCCCSCCC----SCCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSS------CCCCBC
T ss_pred CCeEEEecCCCccccCc----cCCCCCeEEECCCCc---------CCEeChhhhccCCCCCEEECCCC------cCCeeC
Confidence 67888877655543110 124689999999973 33333335678899999999642 122222
Q ss_pred hHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCH-
Q 008973 208 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN- 286 (547)
Q Consensus 208 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~- 286 (547)
...+ ..+++|++|+++++ .+..... ...++|++|+++++ .++.... ..+..+++|+.|+++++ .+..
T Consensus 93 ~~~~----~~l~~L~~L~Ls~n-~l~~l~~----~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~ 160 (330)
T 1xku_A 93 PGAF----APLVKLERLYLSKN-QLKELPE----KMPKTLQELRVHEN-EITKVRK-SVFNGLNQMIVVELGTN-PLKSS 160 (330)
T ss_dssp TTTT----TTCTTCCEEECCSS-CCSBCCS----SCCTTCCEEECCSS-CCCBBCH-HHHTTCTTCCEEECCSS-CCCGG
T ss_pred HHHh----cCCCCCCEEECCCC-cCCccCh----hhcccccEEECCCC-cccccCH-hHhcCCccccEEECCCC-cCCcc
Confidence 2222 45788999999884 4432110 11267888888875 3332222 23445678888888874 4432
Q ss_pred -HHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHH
Q 008973 287 -HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 365 (547)
Q Consensus 287 -~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~ 365 (547)
.....+..+++|+.|+++++ .++.... ...++|++|++++|.++......+.. +++|+.|+++++. ++....
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n-~l~~l~~---~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~-l~~~~~ 233 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADT-NITTIPQ---GLPPSLTELHLDGNKITKVDAASLKG--LNNLAKLGLSFNS-ISAVDN 233 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSS-CCCSCCS---SCCTTCSEEECTTSCCCEECTGGGTT--CTTCCEEECCSSC-CCEECT
T ss_pred CcChhhccCCCCcCEEECCCC-ccccCCc---cccccCCEEECCCCcCCccCHHHhcC--CCCCCEEECCCCc-CceeCh
Confidence 11234557788888888877 4543211 12378888888888776654444444 7788888888754 432111
Q ss_pred HHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCC
Q 008973 366 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 445 (547)
Q Consensus 366 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 445 (547)
..+. .+++|++|+++++ .++.. ......+++|+.|++++| .++..+...+...... ...+.|+.|++++|
T Consensus 234 ~~~~---~l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~---~~~~~l~~l~l~~N 303 (330)
T 1xku_A 234 GSLA---NTPHLRELHLNNN-KLVKV--PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYN---TKKASYSGVSLFSN 303 (330)
T ss_dssp TTGG---GSTTCCEEECCSS-CCSSC--CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCC---TTSCCCSEEECCSS
T ss_pred hhcc---CCCCCCEEECCCC-cCccC--ChhhccCCCcCEEECCCC-cCCccChhhcCCcccc---cccccccceEeecC
Confidence 1111 1277888888874 55411 111225677888888877 4554433222211000 02466778888887
Q ss_pred CCCCHHHH--HHhhCCCCCCCcEEEeeCC
Q 008973 446 GGITQLAF--RWLKKPYFPRLRWLGVTGS 472 (547)
Q Consensus 446 ~~i~~~~~--~~l~~~~~~~L~~L~l~~~ 472 (547)
+ +....+ ..+. .+++|+.+++++|
T Consensus 304 ~-~~~~~i~~~~f~--~~~~l~~l~L~~N 329 (330)
T 1xku_A 304 P-VQYWEIQPSTFR--CVYVRAAVQLGNY 329 (330)
T ss_dssp S-SCGGGSCGGGGT--TCCCGGGEEC---
T ss_pred c-ccccccCccccc--cccceeEEEeccc
Confidence 7 443221 2222 4677777777765
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=8e-18 Score=162.14 Aligned_cols=197 Identities=16% Similarity=0.160 Sum_probs=91.3
Q ss_pred CCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccc
Q 008973 126 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 205 (547)
Q Consensus 126 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 205 (547)
.++|+.|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++ ....
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n------~l~~ 116 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNK---------ISKIHEKAFSPLRKLQKLYISKN------HLVE 116 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC---------CCEECGGGSTTCTTCCEEECCSS------CCCS
T ss_pred CCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCc---------cCccCHhHhhCcCCCCEEECCCC------cCCc
Confidence 3577777777766654322222 367778888887762 33323344566777777777542 1112
Q ss_pred cChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHH-HHHHhcCCCccEEEccCCCCC
Q 008973 206 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVF-HDISATSLSLTHVCLRWCNLL 284 (547)
Q Consensus 206 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l 284 (547)
++. ...++|++|+++++ .+... ....+..+++|+.|+++++. ++..+. ...+... +|+.|+++++ .+
T Consensus 117 l~~-------~~~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n-~l 184 (332)
T 2ft3_A 117 IPP-------NLPSSLVELRIHDN-RIRKV-PKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEA-KL 184 (332)
T ss_dssp CCS-------SCCTTCCEEECCSS-CCCCC-CSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSS-BC
T ss_pred cCc-------cccccCCEEECCCC-ccCcc-CHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCC-CC
Confidence 221 11256777777663 33321 11123445666666666532 221100 0011111 4555555552 22
Q ss_pred CHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCC
Q 008973 285 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 356 (547)
Q Consensus 285 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~ 356 (547)
...+. .-.++|+.|++++| .+.......+..+++|+.|++++|.++......+.. +++|+.|++++
T Consensus 185 ~~l~~---~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~ 250 (332)
T 2ft3_A 185 TGIPK---DLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDN 250 (332)
T ss_dssp SSCCS---SSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--CTTCCEEECCS
T ss_pred CccCc---cccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--CCCCCEEECCC
Confidence 21110 01245555555554 344333334445555555555555444322222222 44444444444
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=1.2e-15 Score=152.82 Aligned_cols=330 Identities=16% Similarity=0.123 Sum_probs=200.6
Q ss_pred cCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeeccccccc-ccch------hHHHHH--HHhhcccceeeccC
Q 008973 28 KCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISL-FLRH------NFARVW--ALASEKLTSLEIGY 98 (547)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~------~~~~l~--~~~~~~L~~L~l~~ 98 (547)
+.++|+.|++++ +.+ ..++..+..+++|++|+++++... ..+. ....+. .-...+++.|+++.
T Consensus 9 ~~~~L~~L~l~~------n~l--~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 9 SNTFLQEPLRHS------SNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred ccccchhhhccc------Cch--hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence 457899999984 344 355566788999999999876431 1111 111111 11125677777776
Q ss_pred cchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhh
Q 008973 99 ISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGL 178 (547)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 178 (547)
...... ....++|++|+++++.+.. + ....++|++|++++|.. +
T Consensus 81 ~~l~~l------------------p~~~~~L~~L~l~~n~l~~--l---p~~~~~L~~L~l~~n~l---------~---- 124 (454)
T 1jl5_A 81 LGLSSL------------------PELPPHLESLVASCNSLTE--L---PELPQSLKSLLVDNNNL---------K---- 124 (454)
T ss_dssp SCCSCC------------------CSCCTTCSEEECCSSCCSS--C---CCCCTTCCEEECCSSCC---------S----
T ss_pred CccccC------------------CCCcCCCCEEEccCCcCCc--c---ccccCCCcEEECCCCcc---------C----
Confidence 532221 1124789999999887765 2 12458999999999842 1
Q ss_pred hhhccC-CCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCC
Q 008973 179 QQINQH-GKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQ 257 (547)
Q Consensus 179 ~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 257 (547)
.+... ++|++|+++++ ....++. ...+++|++|+++++ .+... ....++|+.|+++++.
T Consensus 125 -~l~~~~~~L~~L~L~~n------~l~~lp~------~~~l~~L~~L~l~~N-~l~~l-----p~~~~~L~~L~L~~n~- 184 (454)
T 1jl5_A 125 -ALSDLPPLLEYLGVSNN------QLEKLPE------LQNSSFLKIIDVDNN-SLKKL-----PDLPPSLEFIAAGNNQ- 184 (454)
T ss_dssp -CCCSCCTTCCEEECCSS------CCSSCCC------CTTCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSSC-
T ss_pred -cccCCCCCCCEEECcCC------CCCCCcc------cCCCCCCCEEECCCC-cCccc-----CCCcccccEEECcCCc-
Confidence 12222 68999999753 1222321 255899999999995 44421 1234699999999864
Q ss_pred CCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHh
Q 008973 258 LTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVG 337 (547)
Q Consensus 258 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 337 (547)
++... -...+++|++|+++++ .+...+ ...++|+.|++++| .+.. +..+..+++|++|++++|.++...
T Consensus 185 l~~l~---~~~~l~~L~~L~l~~N-~l~~l~----~~~~~L~~L~l~~n-~l~~--lp~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 185 LEELP---ELQNLPFLTAIYADNN-SLKKLP----DLPLSLESIVAGNN-ILEE--LPELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CSSCC---CCTTCTTCCEEECCSS-CCSSCC----CCCTTCCEEECCSS-CCSS--CCCCTTCTTCCEEECCSSCCSSCC
T ss_pred CCcCc---cccCCCCCCEEECCCC-cCCcCC----CCcCcccEEECcCC-cCCc--ccccCCCCCCCEEECCCCcCCccc
Confidence 44321 1456789999999995 443211 12468999999998 6653 335789999999999999876421
Q ss_pred HHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHH
Q 008973 338 VSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDT 417 (547)
Q Consensus 338 l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 417 (547)
. ..++|+.|+++++. ++. +.... ++|+.|+++++ .++... ...++|+.|++++| .++.
T Consensus 254 -----~-~~~~L~~L~l~~N~-l~~-----l~~~~--~~L~~L~ls~N-~l~~l~-----~~~~~L~~L~l~~N-~l~~- 311 (454)
T 1jl5_A 254 -----D-LPPSLEALNVRDNY-LTD-----LPELP--QSLTFLDVSEN-IFSGLS-----ELPPNLYYLNASSN-EIRS- 311 (454)
T ss_dssp -----S-CCTTCCEEECCSSC-CSC-----CCCCC--TTCCEEECCSS-CCSEES-----CCCTTCCEEECCSS-CCSE-
T ss_pred -----c-cccccCEEECCCCc-ccc-----cCccc--CcCCEEECcCC-ccCccc-----CcCCcCCEEECcCC-cCCc-
Confidence 2 35789999999875 442 11112 78999999994 565311 12378999999999 5553
Q ss_pred HHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 418 SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 418 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
+.. ..++|+.|++++|. ++. +.. .+++|+.|++++|.
T Consensus 312 ----i~~--------~~~~L~~L~Ls~N~-l~~-----lp~-~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 312 ----LCD--------LPPSLEELNVSNNK-LIE-----LPA-LPPRLERLIASFNH 348 (454)
T ss_dssp ----ECC--------CCTTCCEEECCSSC-CSC-----CCC-CCTTCCEEECCSSC
T ss_pred ----ccC--------CcCcCCEEECCCCc-ccc-----ccc-cCCcCCEEECCCCc
Confidence 111 23589999999997 653 322 47899999999995
No 57
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.56 E-value=7.2e-14 Score=135.55 Aligned_cols=192 Identities=23% Similarity=0.252 Sum_probs=112.5
Q ss_pred CCccEEEccCCCCCCHHHHHHhh-----cCCCCCEEeCCCCCCCChHHHHhhh-CCCCccEEEecCccCChHhHHHHHH-
Q 008973 271 LSLTHVCLRWCNLLTNHAIKSLA-----SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRL- 343 (547)
Q Consensus 271 ~~L~~L~l~~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~- 343 (547)
+.|++|++++| .++......+. .+++|+.|++++| .+++.++..+. .+++|+.|++++|.+++.+...+..
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 34555555553 34444433332 2256666666666 56665555544 3556777777777777666655543
Q ss_pred --hcCCCccEEEeCCCCCCcHHHHHHHhcc-CCCCCccEEecCCCCCCCHHHHHHHH---hcCCCCcEEeccCCCCCCHH
Q 008973 344 --TVITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDT 417 (547)
Q Consensus 344 --~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~ 417 (547)
...++|+.|++++|. +++.+...++.. ...++|++|++++ +.+++.++..+. ..+++|+.|++++| .+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 124667777777763 666665555432 1126777777777 467766655443 24567788888777 67777
Q ss_pred HHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCC---CcEEE--eeCCC
Q 008973 418 SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPR---LRWLG--VTGSV 473 (547)
Q Consensus 418 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~---L~~L~--l~~~~ 473 (547)
+...++.++. .+++|++|+|++|. |++.+...+.....+. |+.+. +.++.
T Consensus 227 g~~~l~~~L~-----~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~ 281 (372)
T 3un9_A 227 AALALARAAR-----EHPSLELLHLYFNE-LSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281 (372)
T ss_dssp HHHHHHHHHH-----HCSSCCEEECTTSS-CCHHHHHHHHHCC------CEEECCCC----
T ss_pred HHHHHHHHHH-----hCCCCCEEeccCCC-CCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence 7766665443 55778888888776 7777777666522222 66665 55543
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.55 E-value=4.1e-17 Score=157.17 Aligned_cols=294 Identities=13% Similarity=0.063 Sum_probs=170.9
Q ss_pred CccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccC
Q 008973 128 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 207 (547)
Q Consensus 128 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 207 (547)
+++.++++.+.++.-.. ...++|+.|++++|. ++......+..+++|++|+++++ ....+.
T Consensus 34 ~l~~l~~~~~~l~~ip~----~~~~~l~~L~l~~n~---------i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~ 94 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK----EISPDTTLLDLQNND---------ISELRKDDFKGLQHLYALVLVNN------KISKIH 94 (332)
T ss_dssp ETTEEECCSSCCSSCCS----CCCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSS------CCCEEC
T ss_pred cCCEEECCCCCccccCC----CCCCCCeEEECCCCc---------CCccCHhHhhCCCCCcEEECCCC------ccCccC
Confidence 68888888665543111 124689999999973 33333345678899999999642 122332
Q ss_pred hHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHH
Q 008973 208 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH 287 (547)
Q Consensus 208 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 287 (547)
...+ ..+++|++|+++++ .+..... ...++|++|+++++. ++.... ..+..+++|++|+++++ .+...
T Consensus 95 ~~~~----~~l~~L~~L~L~~n-~l~~l~~----~~~~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~l~~n-~l~~~ 162 (332)
T 2ft3_A 95 EKAF----SPLRKLQKLYISKN-HLVEIPP----NLPSSLVELRIHDNR-IRKVPK-GVFSGLRNMNCIEMGGN-PLENS 162 (332)
T ss_dssp GGGS----TTCTTCCEEECCSS-CCCSCCS----SCCTTCCEEECCSSC-CCCCCS-GGGSSCSSCCEEECCSC-CCBGG
T ss_pred HhHh----hCcCCCCEEECCCC-cCCccCc----cccccCCEEECCCCc-cCccCH-hHhCCCccCCEEECCCC-ccccC
Confidence 2222 45789999999885 4442110 112688999988753 332211 12445778888888884 44321
Q ss_pred --HHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHH
Q 008973 288 --AIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 365 (547)
Q Consensus 288 --~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~ 365 (547)
....+..+ +|+.|+++++ .++.... ...++|++|++++|.++......+.. +++|+.|+++++. ++....
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n-~l~~l~~---~~~~~L~~L~l~~n~i~~~~~~~l~~--l~~L~~L~L~~N~-l~~~~~ 234 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEA-KLTGIPK---DLPETLNELHLDHNKIQAIELEDLLR--YSKLYRLGLGHNQ-IRMIEN 234 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSS-BCSSCCS---SSCSSCSCCBCCSSCCCCCCTTSSTT--CTTCSCCBCCSSC-CCCCCT
T ss_pred CCCcccccCC-ccCEEECcCC-CCCccCc---cccCCCCEEECCCCcCCccCHHHhcC--CCCCCEEECCCCc-CCcCCh
Confidence 11223344 8888888887 4544211 12368888888888777655444444 7888888888764 432111
Q ss_pred HHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCC
Q 008973 366 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 445 (547)
Q Consensus 366 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 445 (547)
..+. .+++|++|+++++ .++.. ......+++|+.|++++| .++..+...+...... ...++|+.|++++|
T Consensus 235 ~~~~---~l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~---~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 235 GSLS---FLPTLRELHLDNN-KLSRV--PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFG---VKRAYYNGISLFNN 304 (332)
T ss_dssp TGGG---GCTTCCEEECCSS-CCCBC--CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCC---SSSCCBSEEECCSS
T ss_pred hHhh---CCCCCCEEECCCC-cCeec--ChhhhcCccCCEEECCCC-CCCccChhHccccccc---cccccccceEeecC
Confidence 1111 1278888888884 55521 111235788888888888 5665443333321100 02467888888888
Q ss_pred CCCCHH--HHHHhhCCCCCCCcEEEeeCCC
Q 008973 446 GGITQL--AFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 446 ~~i~~~--~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
+ +... ....+. .+++|+.+++.+|.
T Consensus 305 ~-~~~~~~~~~~~~--~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 305 P-VPYWEVQPATFR--CVTDRLAIQFGNYK 331 (332)
T ss_dssp S-SCGGGSCGGGGT--TBCCSTTEEC----
T ss_pred c-ccccccCccccc--ccchhhhhhccccc
Confidence 7 4421 122233 47888888887763
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.53 E-value=3.9e-16 Score=149.10 Aligned_cols=153 Identities=16% Similarity=0.107 Sum_probs=90.1
Q ss_pred CCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCC
Q 008973 295 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 374 (547)
Q Consensus 295 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 374 (547)
+++|+.|++++| .+.......+..+++|++|++++|.++......+.. .+++|+.|+++++. ++.. .....+
T Consensus 119 ~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~-l~~~-----~~~~~l 190 (317)
T 3o53_A 119 GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-SSDTLEHLNLQYNF-IYDV-----KGQVVF 190 (317)
T ss_dssp CSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG-GTTTCCEEECTTSC-CCEE-----ECCCCC
T ss_pred cCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh-ccCcCCEEECCCCc-Cccc-----cccccc
Confidence 566777777776 555544445566777777777777666554444433 36777777777754 3321 111123
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCC-HHHH
Q 008973 375 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT-QLAF 453 (547)
Q Consensus 375 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~-~~~~ 453 (547)
++|++|++++ +.++..... ...+++|+.|++++| .++.. ...+. .+++|+.|++++|+ ++ ....
T Consensus 191 ~~L~~L~Ls~-N~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l-----~~~~~-----~l~~L~~L~l~~N~-~~~~~~~ 255 (317)
T 3o53_A 191 AKLKTLDLSS-NKLAFMGPE--FQSAAGVTWISLRNN-KLVLI-----EKALR-----FSQNLEHFDLRGNG-FHCGTLR 255 (317)
T ss_dssp TTCCEEECCS-SCCCEECGG--GGGGTTCSEEECTTS-CCCEE-----CTTCC-----CCTTCCEEECTTCC-CBHHHHH
T ss_pred ccCCEEECCC-CcCCcchhh--hcccCcccEEECcCC-cccch-----hhHhh-----cCCCCCEEEccCCC-ccCcCHH
Confidence 7788888887 455422111 225678888888887 45531 11111 66788888888887 66 3333
Q ss_pred HHhhCCCCCCCcEEEeeCC
Q 008973 454 RWLKKPYFPRLRWLGVTGS 472 (547)
Q Consensus 454 ~~l~~~~~~~L~~L~l~~~ 472 (547)
..+. .+++|+.+++.++
T Consensus 256 ~~~~--~~~~L~~l~l~~~ 272 (317)
T 3o53_A 256 DFFS--KNQRVQTVAKQTV 272 (317)
T ss_dssp HHHH--TCHHHHHHHHHHH
T ss_pred HHHh--ccccceEEECCCc
Confidence 3333 3677776665533
No 60
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=2.2e-13 Score=132.16 Aligned_cols=178 Identities=20% Similarity=0.197 Sum_probs=144.6
Q ss_pred CCCCCEEeCCCCCCCChHHHHhhhC-----CCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHh
Q 008973 295 NTGIKVLDLRDCKNLGDEALRAISS-----LPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALF 369 (547)
Q Consensus 295 ~~~L~~L~l~~~~~l~~~~~~~l~~-----~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 369 (547)
.++|+.|++++| .++......++. .++|+.|++++|.+++.++..+.. .+++|+.|++++| .+++.+...++
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-HHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-HHHhccHhhcCCC-CCCHHHHHHHH
Confidence 478999999999 788877766652 379999999999999999888776 6789999999997 59988877765
Q ss_pred cc--CCCCCccEEecCCCCCCCHHHHHHHH---hcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCC
Q 008973 370 DG--TSKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 444 (547)
Q Consensus 370 ~~--~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 444 (547)
.. ...++|++|++++| .+++.+...+. ..+++|+.|++++| .+++.+...++..+. .+++|+.|+|++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~-----~~~~L~~L~Ls~ 220 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLD-----RNRQLQELNVAY 220 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGG-----GCSCCCEEECCS
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHh-----cCCCcCeEECCC
Confidence 43 12378999999995 78887766654 46789999999999 699999888877665 678999999999
Q ss_pred CCCCCHHHHHHhhC--CCCCCCcEEEeeCCC-CHHHHHHHHh
Q 008973 445 CGGITQLAFRWLKK--PYFPRLRWLGVTGSV-NRDILDALAR 483 (547)
Q Consensus 445 ~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~-~~~~~~~~~~ 483 (547)
|. |++.+...+.. ..+++|+.|++++|. ....+..+..
T Consensus 221 N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 221 NG-AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp SC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 97 99988766654 137899999999997 4556666655
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=9.1e-16 Score=161.75 Aligned_cols=409 Identities=16% Similarity=0.107 Sum_probs=218.9
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhHHH-HHhcCCccceeecccccccc-c-chh
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEE-LLNGCPQLEALILMFDISLF-L-RHN 79 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-~-~~~ 79 (547)
.++|++|+|+++. ++.... ..+.++++|++|++++. .++. +.. .+..+++|++|+++++.... . ...
T Consensus 99 L~~L~~L~Ls~N~-l~~l~~-~~f~~L~~L~~L~Ls~N------~l~~--l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~ 168 (635)
T 4g8a_A 99 LSHLSTLILTGNP-IQSLAL-GAFSGLSSLQKLVAVET------NLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEY 168 (635)
T ss_dssp CTTCCEEECTTCC-CCEECG-GGGTTCTTCCEEECTTS------CCCC--STTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred CCCCCEEEccCCc-CCCCCH-HHhcCCCCCCEEECCCC------cCCC--CChhhhhcCcccCeeccccCccccCCCchh
Confidence 4789999999986 655432 34568999999999853 3331 111 24678899999998765421 1 222
Q ss_pred HHHHHHHhhcccceeeccCcc-----hHhhhhhcC-------CCcCCCCCCCcc-CCCCCCCccEEEeeccCCChhHHHH
Q 008973 80 FARVWALASEKLTSLEIGYIS-----SVMVTELLS-------PNVEPHQSPNQI-RPSILPGIQKLCLSVDYITDAMVGT 146 (547)
Q Consensus 80 ~~~l~~~~~~~L~~L~l~~~~-----~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~ 146 (547)
+..+ ++|+.|+++... ...+..+.. ..+....+.... .......++.+.+..+.........
T Consensus 169 ~~~l-----~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~ 243 (635)
T 4g8a_A 169 FSNL-----TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 243 (635)
T ss_dssp GGGC-----TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHH
T ss_pred hccc-----hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccch
Confidence 2223 778888887532 111111111 111111111111 1112345566777766655555555
Q ss_pred HHhcCCCccEEecCCCC-----CCCCcccc-----------------------------------------ccchhhhhh
Q 008973 147 ISQGLVSLTHLDLRDAP-----LIEPRITF-----------------------------------------DLTNSGLQQ 180 (547)
Q Consensus 147 l~~~~~~L~~L~l~~~~-----~~~~~~~~-----------------------------------------~~~~~~l~~ 180 (547)
....++.++...+.... ........ ......+..
T Consensus 244 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 323 (635)
T 4g8a_A 244 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD 323 (635)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG
T ss_pred hhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc
Confidence 55566666554432110 00000000 000011112
Q ss_pred hccCCCcceEEcccccccccc--cccccCh--------HHHHHHHHcCCCCcEEEEcCCCCCCHH-HHHHHHHcCCCCcE
Q 008973 181 INQHGKLKHLSLIRSQEFLIT--YFRRVND--------LGILLMADKCASMESICLGGFCRVTDT-GFKTILHSCSNLYK 249 (547)
Q Consensus 181 l~~~~~L~~L~l~~~~~~~~~--~~~~~~~--------~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~ 249 (547)
+..+..|+.|++..+...... ....+.. .... -...+++|+.|+++.+ .+... ........+.+|+.
T Consensus 324 ~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~ 401 (635)
T 4g8a_A 324 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTISLKY 401 (635)
T ss_dssp GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC-CCCBCTTCCEEECCSS-CCBEEEECCHHHHSCSCCCE
T ss_pred cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc-ccccccccccchhhcc-ccccccccccchhhhhhhhh
Confidence 334556777776532110000 0000000 0000 0013566777777663 22110 01112334667777
Q ss_pred EEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEec
Q 008973 250 LRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLD 329 (547)
Q Consensus 250 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~ 329 (547)
+++..+.... .......+++|+.+++..++.........+..+++++.++++.+ .+.......+..++.|+.|+++
T Consensus 402 L~~~~~~~~~---~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls 477 (635)
T 4g8a_A 402 LDLSFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMA 477 (635)
T ss_dssp EECCSCSEEE---ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECT
T ss_pred hhcccccccc---ccccccccccccchhhhhcccccccccccccccccccccccccc-ccccccccccccchhhhhhhhh
Confidence 7776543211 00112345788888887754433333334567899999999988 5655555566789999999999
Q ss_pred CccCChHhH-HHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEec
Q 008973 330 GSDISDVGV-SYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRV 408 (547)
Q Consensus 330 ~~~l~~~~l-~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l 408 (547)
+|.+..... ..+. .+++|+.|++++|. ++...-..+ . .+++|++|++++ +.++...... ...+++|+.|++
T Consensus 478 ~N~~~~~~~~~~~~--~l~~L~~L~Ls~N~-L~~l~~~~f-~--~l~~L~~L~Ls~-N~l~~l~~~~-~~~l~~L~~L~L 549 (635)
T 4g8a_A 478 GNSFQENFLPDIFT--ELRNLTFLDLSQCQ-LEQLSPTAF-N--SLSSLQVLNMSH-NNFFSLDTFP-YKCLNSLQVLDY 549 (635)
T ss_dssp TCEEGGGEECSCCT--TCTTCCEEECTTSC-CCEECTTTT-T--TCTTCCEEECTT-SCCCBCCCGG-GTTCTTCCEEEC
T ss_pred hcccccccCchhhh--hccccCEEECCCCc-cCCcChHHH-c--CCCCCCEEECCC-CcCCCCChhH-HhCCCCCCEEEC
Confidence 985433222 2223 48899999999974 542211111 1 238999999999 4665322111 226899999999
Q ss_pred cCCCCCCHHHHHHHHhccccCccccC-CCccEEecCCCCCCCH
Q 008973 409 RQCPLIGDTSVIALASMLVDDDRWYG-SSIRLLDLYNCGGITQ 450 (547)
Q Consensus 409 ~~~~~l~~~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~i~~ 450 (547)
++| .++......+. .+ ++|+.|+|++|+...+
T Consensus 550 s~N-~l~~~~~~~l~---------~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 550 SLN-HIMTSKKQELQ---------HFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTS-CCCBCCSSCTT---------CCCTTCCEEECTTCCBCCS
T ss_pred CCC-cCCCCCHHHHH---------hhhCcCCEEEeeCCCCccc
Confidence 999 56544333322 33 6899999999984433
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.50 E-value=5.5e-15 Score=148.62 Aligned_cols=226 Identities=17% Similarity=0.188 Sum_probs=124.1
Q ss_pred CCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccccccccc
Q 008973 127 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRV 206 (547)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 206 (547)
+++++|+|+++.+.......+ ..+++|++|+|++|. ++......+..+++|++|+++++ ....+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~L~~n------~l~~~ 138 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNS---------IRQIEVGAFNGLASLNTLELFDN------WLTVI 138 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSS------CCSBC
T ss_pred CCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCc---------cCCcChhhccCcccCCEEECCCC------cCCcc
Confidence 456666666655554322222 256666666666652 22222234455666666666432 12222
Q ss_pred ChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCH
Q 008973 207 NDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN 286 (547)
Q Consensus 207 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 286 (547)
....+ ..+++|++|+++++ .+... ....+..+++|+.|+++++..+...... .+..+++|+.|+++++ .+..
T Consensus 139 ~~~~~----~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~ 210 (452)
T 3zyi_A 139 PSGAF----EYLSKLRELWLRNN-PIESI-PSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMC-NIKD 210 (452)
T ss_dssp CTTTS----SSCTTCCEEECCSC-CCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTS-CCSS
T ss_pred Chhhh----cccCCCCEEECCCC-Cccee-CHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCC-cccc
Confidence 21111 33566666666663 33321 1112345667777777665444322211 2334567777777774 3332
Q ss_pred HHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHH
Q 008973 287 HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCIS 366 (547)
Q Consensus 287 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~ 366 (547)
. ..+..+++|+.|++++| .+.......+..+++|+.|++++|.++......+.. +++|+.|+++++. ++.....
T Consensus 211 ~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~~~~~ 284 (452)
T 3zyi_A 211 M--PNLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG--LASLVELNLAHNN-LSSLPHD 284 (452)
T ss_dssp C--CCCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSC-CSCCCTT
T ss_pred c--ccccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhcC--CCCCCEEECCCCc-CCccChH
Confidence 2 23556778888888877 666665666777888888888888776554444444 7788888887753 4321111
Q ss_pred HHhccCCCCCccEEecCCC
Q 008973 367 ALFDGTSKLQLQELDLSNL 385 (547)
Q Consensus 367 ~l~~~~~~~~L~~L~l~~~ 385 (547)
.+ ..+++|+.|+++++
T Consensus 285 ~~---~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 285 LF---TPLRYLVELHLHHN 300 (452)
T ss_dssp SS---TTCTTCCEEECCSS
T ss_pred Hh---ccccCCCEEEccCC
Confidence 11 12277888888874
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.50 E-value=5.5e-15 Score=148.06 Aligned_cols=155 Identities=17% Similarity=0.151 Sum_probs=84.3
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCC
Q 008973 218 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 297 (547)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 297 (547)
+++|++|+++++ .+... ....+..+++|+.|+++++..+...... .+..+++|++|+++++ .+... ..+..+++
T Consensus 135 l~~L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~ 208 (440)
T 3zyj_A 135 LSKLKELWLRNN-PIESI-PSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC-NLREI--PNLTPLIK 208 (440)
T ss_dssp CSSCCEEECCSC-CCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS-CCSSC--CCCTTCSS
T ss_pred cccCceeeCCCC-ccccc-CHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC-cCccc--cccCCCcc
Confidence 455555555553 33221 1112334566666666654433321111 1234566667776663 33321 13456777
Q ss_pred CCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCc
Q 008973 298 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQL 377 (547)
Q Consensus 298 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L 377 (547)
|+.|++++| .+.......+..+++|+.|++++|.++......+.. +++|+.|+++++. ++......+ ..+++|
T Consensus 209 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L 281 (440)
T 3zyj_A 209 LDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN--LQSLVEINLAHNN-LTLLPHDLF---TPLHHL 281 (440)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT--CTTCCEEECTTSC-CCCCCTTTT---SSCTTC
T ss_pred cCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhcC--CCCCCEEECCCCC-CCccChhHh---ccccCC
Confidence 777777777 566655556667777777777777666554444444 6777777777753 432111111 122677
Q ss_pred cEEecCCC
Q 008973 378 QELDLSNL 385 (547)
Q Consensus 378 ~~L~l~~~ 385 (547)
+.|+++++
T Consensus 282 ~~L~L~~N 289 (440)
T 3zyj_A 282 ERIHLHHN 289 (440)
T ss_dssp CEEECCSS
T ss_pred CEEEcCCC
Confidence 88888774
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.48 E-value=4.2e-15 Score=148.88 Aligned_cols=184 Identities=18% Similarity=0.154 Sum_probs=123.6
Q ss_pred cCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCC
Q 008973 217 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 296 (547)
Q Consensus 217 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 296 (547)
.+++|++|+|+++ .+... ....+..+++|+.|+++++. ++.... ..+..+++|++|++++++.+.......+..++
T Consensus 110 ~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 110 GLANLNTLELFDN-RLTTI-PNGAFVYLSKLKELWLRNNP-IESIPS-YAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp TCSSCCEEECCSS-CCSSC-CTTTSCSCSSCCEEECCSCC-CCEECT-TTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred CCccCCEEECCCC-cCCee-CHhHhhccccCceeeCCCCc-ccccCH-HHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 4667777777764 44322 11124568899999999853 332211 12346789999999987777655555677889
Q ss_pred CCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCC
Q 008973 297 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 376 (547)
Q Consensus 297 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 376 (547)
+|+.|++++| .++. +..+..+++|+.|++++|.++......+.. +++|+.|+++++. ++......+ ..+++
T Consensus 186 ~L~~L~L~~n-~l~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~n~-l~~~~~~~~---~~l~~ 256 (440)
T 3zyj_A 186 NLRYLNLAMC-NLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQG--LMHLQKLWMIQSQ-IQVIERNAF---DNLQS 256 (440)
T ss_dssp SCCEEECTTS-CCSS--CCCCTTCSSCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTCC-CCEECTTSS---TTCTT
T ss_pred ccCeecCCCC-cCcc--ccccCCCcccCEEECCCCccCccChhhhcc--CccCCEEECCCCc-eeEEChhhh---cCCCC
Confidence 9999999988 5654 335678899999999999887655444544 8899999999864 543221111 12389
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCC
Q 008973 377 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIG 415 (547)
Q Consensus 377 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~ 415 (547)
|+.|++++ +.++..... ....+++|+.|++++|+..-
T Consensus 257 L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 257 LVEINLAH-NNLTLLPHD-LFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCEEECTT-SCCCCCCTT-TTSSCTTCCEEECCSSCEEC
T ss_pred CCEEECCC-CCCCccChh-HhccccCCCEEEcCCCCccC
Confidence 99999999 466532221 12257899999999987433
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.48 E-value=6.5e-15 Score=148.08 Aligned_cols=228 Identities=19% Similarity=0.161 Sum_probs=154.7
Q ss_pred CCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCC
Q 008973 152 VSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCR 231 (547)
Q Consensus 152 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 231 (547)
++++.|+|++| .++......+..+++|++|+++++ ....+....+ ..+++|++|+|+++ .
T Consensus 75 ~~l~~L~L~~n---------~i~~~~~~~~~~l~~L~~L~Ls~n------~i~~~~~~~~----~~l~~L~~L~L~~n-~ 134 (452)
T 3zyi_A 75 SNTRYLNLMEN---------NIQMIQADTFRHLHHLEVLQLGRN------SIRQIEVGAF----NGLASLNTLELFDN-W 134 (452)
T ss_dssp TTCSEEECCSS---------CCCEECTTTTTTCTTCCEEECCSS------CCCEECTTTT----TTCTTCCEEECCSS-C
T ss_pred CCccEEECcCC---------cCceECHHHcCCCCCCCEEECCCC------ccCCcChhhc----cCcccCCEEECCCC-c
Confidence 58999999997 344333445678899999999652 2233332222 45789999999985 5
Q ss_pred CCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCCh
Q 008973 232 VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGD 311 (547)
Q Consensus 232 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~ 311 (547)
+... ....+..+++|+.|+++++. ++.... ..+..+++|+.|++++++.+.......+..+++|+.|++++| .+..
T Consensus 135 l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~ 210 (452)
T 3zyi_A 135 LTVI-PSGAFEYLSKLRELWLRNNP-IESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKD 210 (452)
T ss_dssp CSBC-CTTTSSSCTTCCEEECCSCC-CCEECT-TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSS
T ss_pred CCcc-ChhhhcccCCCCEEECCCCC-cceeCH-hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccc
Confidence 5432 12234568899999999853 432211 134467899999999887776655556778899999999988 5654
Q ss_pred HHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHH
Q 008973 312 EALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDN 391 (547)
Q Consensus 312 ~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~ 391 (547)
. ..+..+++|+.|++++|.++......+.. +++|+.|+++++. ++......+ ..+++|+.|++++ +.++..
T Consensus 211 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~-N~l~~~ 281 (452)
T 3zyi_A 211 M--PNLTPLVGLEELEMSGNHFPEIRPGSFHG--LSSLKKLWVMNSQ-VSLIERNAF---DGLASLVELNLAH-NNLSSL 281 (452)
T ss_dssp C--CCCTTCTTCCEEECTTSCCSEECGGGGTT--CTTCCEEECTTSC-CCEECTTTT---TTCTTCCEEECCS-SCCSCC
T ss_pred c--ccccccccccEEECcCCcCcccCcccccC--ccCCCEEEeCCCc-CceECHHHh---cCCCCCCEEECCC-CcCCcc
Confidence 3 45678899999999999887655555555 8899999999864 442211111 1238999999998 466532
Q ss_pred HHHHHHhcCCCCcEEeccCCCC
Q 008973 392 GILTLATCRVPISELRVRQCPL 413 (547)
Q Consensus 392 ~~~~l~~~~~~L~~L~l~~~~~ 413 (547)
... ....+++|+.|++++|+.
T Consensus 282 ~~~-~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 282 PHD-LFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CTT-SSTTCTTCCEEECCSSCE
T ss_pred ChH-HhccccCCCEEEccCCCc
Confidence 211 122578999999998873
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.47 E-value=2e-15 Score=142.04 Aligned_cols=161 Identities=18% Similarity=0.162 Sum_probs=80.7
Q ss_pred hhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhcc
Q 008973 292 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 371 (547)
Q Consensus 292 l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 371 (547)
+..+++|++|++++|..+.......+..+++|++|++++|.++......+.. +++|++|+++++. ++......+
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~~~~~~--- 149 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG--LAALQYLYLQDNA-LQALPDDTF--- 149 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCCEEECCSSC-CCCCCTTTT---
T ss_pred cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC--CcCCCEEECCCCc-ccccCHhHh---
Confidence 3345555555555542243333344445555555555555444332222222 5555555555542 221100001
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHH
Q 008973 372 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 451 (547)
Q Consensus 372 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 451 (547)
..+++|++|+++++ .++...... ...+++|+.|++++| .++......+. .+++|+.|++++|. ++..
T Consensus 150 ~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~ 216 (285)
T 1ozn_A 150 RDLGNLTHLFLHGN-RISSVPERA-FRGLHSLDRLLLHQN-RVAHVHPHAFR---------DLGRLMTLYLFANN-LSAL 216 (285)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTTTTT---------TCTTCCEEECCSSC-CSCC
T ss_pred ccCCCccEEECCCC-cccccCHHH-hcCccccCEEECCCC-cccccCHhHcc---------CcccccEeeCCCCc-CCcC
Confidence 01256666666663 443211111 114677777777777 45443222222 56778888887775 6654
Q ss_pred HHHHhhCCCCCCCcEEEeeCCC
Q 008973 452 AFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 452 ~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
....+.. +++|+.|++++|+
T Consensus 217 ~~~~~~~--l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 217 PTEALAP--LRALQYLRLNDNP 236 (285)
T ss_dssp CHHHHTT--CTTCCEEECCSSC
T ss_pred CHHHccc--CcccCEEeccCCC
Confidence 4444543 7788888887775
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.47 E-value=1.2e-16 Score=152.04 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=87.6
Q ss_pred hcCCCCCEEeCCCCCCCChHHH-HhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhcc
Q 008973 293 ASNTGIKVLDLRDCKNLGDEAL-RAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 371 (547)
Q Consensus 293 ~~~~~L~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 371 (547)
..+++|++|+++++ .+..... ..+..+++|++|++++|.++......+.. +++|+.|+++++. ++...+....
T Consensus 98 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~~~~~~~-- 171 (306)
T 2z66_A 98 LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--LSSLEVLKMAGNS-FQENFLPDIF-- 171 (306)
T ss_dssp ETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT--CTTCCEEECTTCE-EGGGEECSCC--
T ss_pred CCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhccc--CcCCCEEECCCCc-cccccchhHH--
Confidence 35566666666665 3333222 34556666666666666554333222333 5666666666643 3221011111
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHH
Q 008973 372 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 451 (547)
Q Consensus 372 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 451 (547)
..+++|++|+++++ .++......+ ..+++|+.|++++| .++......+. .+++|+.|++++|. ++..
T Consensus 172 ~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~ 238 (306)
T 2z66_A 172 TELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHN-NFFSLDTFPYK---------CLNSLQVLDYSLNH-IMTS 238 (306)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTS-CCSBCCSGGGT---------TCTTCCEEECTTSC-CCBC
T ss_pred hhCcCCCEEECCCC-CcCCcCHHHh-cCCCCCCEEECCCC-ccCccChhhcc---------CcccCCEeECCCCC-Cccc
Confidence 12267777777773 4442211111 25678888888887 45433221221 67888888888886 6554
Q ss_pred HHHHhhCCCCC-CCcEEEeeCCC
Q 008973 452 AFRWLKKPYFP-RLRWLGVTGSV 473 (547)
Q Consensus 452 ~~~~l~~~~~~-~L~~L~l~~~~ 473 (547)
....+.. +| +|+.|++++|+
T Consensus 239 ~~~~~~~--~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 239 KKQELQH--FPSSLAFLNLTQND 259 (306)
T ss_dssp SSSSCCC--CCTTCCEEECTTCC
T ss_pred CHHHHHh--hhccCCEEEccCCC
Confidence 3333433 54 88889888886
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.47 E-value=2.5e-14 Score=134.42 Aligned_cols=108 Identities=22% Similarity=0.160 Sum_probs=52.9
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCc
Q 008973 270 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 349 (547)
Q Consensus 270 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L 349 (547)
+++|++|+++++ .+.......+..+++|+.|++++| .++......+..+++|+.|++++|.++......+.. +++|
T Consensus 128 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L 203 (285)
T 1ozn_A 128 LAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--LGRL 203 (285)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTC
T ss_pred CcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccC--cccc
Confidence 345555555542 222222223445566666666665 454443344555666666666666555443333333 5666
Q ss_pred cEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCC
Q 008973 350 VKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNL 385 (547)
Q Consensus 350 ~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 385 (547)
+.|+++++. ++......+. .+++|+.|+++++
T Consensus 204 ~~L~l~~n~-l~~~~~~~~~---~l~~L~~L~l~~N 235 (285)
T 1ozn_A 204 MTLYLFANN-LSALPTEALA---PLRALQYLRLNDN 235 (285)
T ss_dssp CEEECCSSC-CSCCCHHHHT---TCTTCCEEECCSS
T ss_pred cEeeCCCCc-CCcCCHHHcc---cCcccCEEeccCC
Confidence 666666643 3321111111 1156666666663
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=7.8e-15 Score=139.69 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=58.6
Q ss_pred CCCCCccEEEeeccCCChh--HHHHHHh-cCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccc
Q 008973 124 SILPGIQKLCLSVDYITDA--MVGTISQ-GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLI 200 (547)
Q Consensus 124 ~~~~~L~~L~l~~~~~~~~--~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~ 200 (547)
..+++|++|+++++.++.. .+..+.. ..++|++|++++|. ++......+..+++|++|+++++
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~---------l~~~~~~~~~~l~~L~~L~Ls~N----- 183 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH---------SLNFSCEQVRVFPALSTLDLSDN----- 183 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS---------CCCCCTTTCCCCSSCCEEECCSC-----
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC---------CccchHHHhccCCCCCEEECCCC-----
Confidence 5578888888887777654 2222211 13788888888873 33322234556677777777421
Q ss_pred ccccccCh-HHHH-HH-HHcCCCCcEEEEcCCCCCCH--HHHHHHHHcCCCCcEEEecCC
Q 008973 201 TYFRRVND-LGIL-LM-ADKCASMESICLGGFCRVTD--TGFKTILHSCSNLYKLRVSHG 255 (547)
Q Consensus 201 ~~~~~~~~-~~~~-~l-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 255 (547)
.+.. ..+. .+ ...+++|++|+++++ .+.. .....++..+++|+.|+++++
T Consensus 184 ----~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 184 ----PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp ----TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred ----CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 1111 1111 11 134566666666663 4441 112233445556666666553
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.46 E-value=1.7e-13 Score=141.52 Aligned_cols=244 Identities=19% Similarity=0.159 Sum_probs=141.0
Q ss_pred CCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccccccccc
Q 008973 127 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRV 206 (547)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 206 (547)
++|++|++++|.++. + ...+++|++|+|++|.. +. ++. .+++|++|+++++ ....+
T Consensus 61 ~~L~~L~L~~N~l~~--l---p~~l~~L~~L~Ls~N~l---------~~--lp~--~l~~L~~L~Ls~N------~l~~l 116 (622)
T 3g06_A 61 AHITTLVIPDNNLTS--L---PALPPELRTLEVSGNQL---------TS--LPV--LPPGLLELSIFSN------PLTHL 116 (622)
T ss_dssp TTCSEEEECSCCCSC--C---CCCCTTCCEEEECSCCC---------SC--CCC--CCTTCCEEEECSC------CCCCC
T ss_pred CCCcEEEecCCCCCC--C---CCcCCCCCEEEcCCCcC---------Cc--CCC--CCCCCCEEECcCC------cCCCC
Confidence 678888888776653 1 12567888888888742 11 111 5677888888542 12222
Q ss_pred ChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCH
Q 008973 207 NDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN 286 (547)
Q Consensus 207 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 286 (547)
+. .+++|+.|+++++ .++.. ...+++|++|++++|. ++. +....++|+.|+++++ .++.
T Consensus 117 ~~--------~l~~L~~L~L~~N-~l~~l-----p~~l~~L~~L~Ls~N~-l~~-----l~~~~~~L~~L~L~~N-~l~~ 175 (622)
T 3g06_A 117 PA--------LPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSDNQ-LAS-----LPALPSELCKLWAYNN-QLTS 175 (622)
T ss_dssp CC--------CCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSC
T ss_pred CC--------CCCCcCEEECCCC-CCCcC-----CCCCCCCCEEECcCCc-CCC-----cCCccCCCCEEECCCC-CCCC
Confidence 21 3567888888774 44321 1234778888887753 332 1123457778877773 4433
Q ss_pred HHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHH
Q 008973 287 HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCIS 366 (547)
Q Consensus 287 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~ 366 (547)
.+ ..+++|+.|++++| .++... ...++|+.|++++|.++... . .+++|+.|+++++. ++.
T Consensus 176 l~----~~~~~L~~L~Ls~N-~l~~l~----~~~~~L~~L~L~~N~l~~l~-----~-~~~~L~~L~Ls~N~-L~~---- 235 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDN-QLASLP----TLPSELYKLWAYNNRLTSLP-----A-LPSGLKELIVSGNR-LTS---- 235 (622)
T ss_dssp CC----CCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSSCC-----C-CCTTCCEEECCSSC-CSC----
T ss_pred Cc----ccCCCCcEEECCCC-CCCCCC----CccchhhEEECcCCcccccC-----C-CCCCCCEEEccCCc-cCc----
Confidence 22 34577888888776 444311 13567788888777665322 1 35677777777753 442
Q ss_pred HHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCC
Q 008973 367 ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 367 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
+.. .+++|+.|+++++ .++.... .+++|+.|++++| .++... ..+. .+++|+.|+|++|+
T Consensus 236 -lp~--~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp-~~l~---------~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 236 -LPV--LPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLP-ESLI---------HLSSETTVNLEGNP 295 (622)
T ss_dssp -CCC--CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCC-GGGG---------GSCTTCEEECCSCC
T ss_pred -CCC--CCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCC-HHHh---------hccccCEEEecCCC
Confidence 111 2267777777773 5542111 4567777777777 455221 1111 66777778887776
Q ss_pred CCCHHHHHHh
Q 008973 447 GITQLAFRWL 456 (547)
Q Consensus 447 ~i~~~~~~~l 456 (547)
++......+
T Consensus 296 -l~~~~~~~l 304 (622)
T 3g06_A 296 -LSERTLQAL 304 (622)
T ss_dssp -CCHHHHHHH
T ss_pred -CCCcCHHHH
Confidence 666544443
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.46 E-value=1.1e-14 Score=139.03 Aligned_cols=238 Identities=15% Similarity=0.106 Sum_probs=127.0
Q ss_pred CCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccc
Q 008973 126 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 205 (547)
Q Consensus 126 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 205 (547)
+++|++|+++++.+.......+ ..+++|++|++++|. ++. ...+..+++|++|+++++. ...
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~---------l~~--~~~~~~l~~L~~L~Ls~n~------l~~ 94 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNV---------LYE--TLDLESLSTLRTLDLNNNY------VQE 94 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTSC---------CEE--EEEETTCTTCCEEECCSSE------EEE
T ss_pred CCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCCc---------CCc--chhhhhcCCCCEEECcCCc------ccc
Confidence 5667777777666665433333 366777777777763 211 1125566666666664321 111
Q ss_pred cChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 008973 206 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 285 (547)
Q Consensus 206 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 285 (547)
+. ..++|++|+++++ .+.... ....++|++|++++ +.+.
T Consensus 95 l~---------~~~~L~~L~l~~n-~l~~~~------------------------------~~~~~~L~~L~l~~-N~l~ 133 (317)
T 3o53_A 95 LL---------VGPSIETLHAANN-NISRVS------------------------------CSRGQGKKNIYLAN-NKIT 133 (317)
T ss_dssp EE---------ECTTCCEEECCSS-CCSEEE------------------------------ECCCSSCEEEECCS-SCCC
T ss_pred cc---------CCCCcCEEECCCC-ccCCcC------------------------------ccccCCCCEEECCC-CCCC
Confidence 11 2355566655553 222110 01234566666666 3333
Q ss_pred HHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhh-CCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcH--
Q 008973 286 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-- 362 (547)
Q Consensus 286 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~-- 362 (547)
......+..+++|+.|++++| .+.......+. .+++|++|++++|.++... ... .+++|+.|+++++. ++.
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~--~l~~L~~L~Ls~N~-l~~l~ 207 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQV--VFAKLKTLDLSSNK-LAFMG 207 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCC--CCTTCCEEECCSSC-CCEEC
T ss_pred CccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcccc--ccc--ccccCCEEECCCCc-CCcch
Confidence 332233445677777777776 55554444443 5677777777777665431 111 26677777777753 431
Q ss_pred HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEec
Q 008973 363 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 442 (547)
Q Consensus 363 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 442 (547)
..+..+ ++|+.|++++ +.++.. ......+++|+.|++++| .++......... .+++|+.|++
T Consensus 208 ~~~~~l------~~L~~L~L~~-N~l~~l--~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~--------~~~~L~~l~l 269 (317)
T 3o53_A 208 PEFQSA------AGVTWISLRN-NKLVLI--EKALRFSQNLEHFDLRGN-GFHCGTLRDFFS--------KNQRVQTVAK 269 (317)
T ss_dssp GGGGGG------TTCSEEECTT-SCCCEE--CTTCCCCTTCCEEECTTC-CCBHHHHHHHHH--------TCHHHHHHHH
T ss_pred hhhccc------CcccEEECcC-Ccccch--hhHhhcCCCCCEEEccCC-CccCcCHHHHHh--------ccccceEEEC
Confidence 111111 6777888877 355421 111225678888888888 455333333333 6677777777
Q ss_pred CCCC
Q 008973 443 YNCG 446 (547)
Q Consensus 443 ~~~~ 446 (547)
+++.
T Consensus 270 ~~~~ 273 (317)
T 3o53_A 270 QTVK 273 (317)
T ss_dssp HHHH
T ss_pred CCch
Confidence 6543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=7.6e-14 Score=141.07 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCC
Q 008973 151 LVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFC 230 (547)
Q Consensus 151 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 230 (547)
+++|++|+|++|. ++......+..+++|++|+++++. .....+ ...+++|++|++++|
T Consensus 33 ~~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~------l~~l~~L~~L~Ls~N- 90 (487)
T 3oja_A 33 AWNVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSNV------LYETLD------LESLSTLRTLDLNNN- 90 (487)
T ss_dssp GGGCCEEECCSSC---------CCCCCGGGGTTCTTCCEEECTTSC------CEEEEE------CTTCTTCCEEECCSS-
T ss_pred CCCccEEEeeCCc---------CCCCCHHHHhCCCCCCEEEeeCCC------CCCCcc------cccCCCCCEEEecCC-
Confidence 3467777777752 222222345566666666664321 111111 133556666666653
Q ss_pred CCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCC
Q 008973 231 RVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLG 310 (547)
Q Consensus 231 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~ 310 (547)
.+... ...++|+.|++++|. ++... ...+++|+.|+++++ .++......+..+++|+.|++++| .++
T Consensus 91 ~l~~l------~~~~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 157 (487)
T 3oja_A 91 YVQEL------LVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EID 157 (487)
T ss_dssp EEEEE------EECTTCCEEECCSSC-CCCEE----ECCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTS-CCC
T ss_pred cCCCC------CCCCCcCEEECcCCc-CCCCC----ccccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCC-CCC
Confidence 32211 112455555555432 11110 012345555555552 333222223334555555555555 444
Q ss_pred hHHHHhhh-CCCCccEEEecCccCC
Q 008973 311 DEALRAIS-SLPQLKILLLDGSDIS 334 (547)
Q Consensus 311 ~~~~~~l~-~~~~L~~L~l~~~~l~ 334 (547)
......+. .+++|+.|++++|.++
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcChHHHhhhCCcccEEecCCCccc
Confidence 43333333 4555555555555444
No 73
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.43 E-value=4.8e-16 Score=148.06 Aligned_cols=251 Identities=13% Similarity=0.042 Sum_probs=119.1
Q ss_pred CCccEEEeeccCCCh--hHHHHHHhcCCCccEEecCC-CCCCCCccccccchhhhhhhccCCCcceEEcccccccccccc
Q 008973 127 PGIQKLCLSVDYITD--AMVGTISQGLVSLTHLDLRD-APLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 203 (547)
Q Consensus 127 ~~L~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 203 (547)
.++++|+++++.+.. ..... ...+++|++|++++ + .+.......+..+++|++|+++++. .
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n---------~l~~~~p~~l~~l~~L~~L~Ls~n~------l 113 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGIN---------NLVGPIPPAIAKLTQLHYLYITHTN------V 113 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEET---------TEESCCCGGGGGCTTCSEEEEEEEC------C
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCC---------cccccCChhHhcCCCCCEEECcCCe------e
Confidence 567777777766654 22222 23677777777774 3 2222222345566777777775321 1
Q ss_pred cccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 008973 204 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 283 (547)
Q Consensus 204 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 283 (547)
.......+ ..+++|++|+++++ .+... +...+..+++|++|+++++ .
T Consensus 114 ~~~~p~~~----~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N---------------------------~ 160 (313)
T 1ogq_A 114 SGAIPDFL----SQIKTLVTLDFSYN-ALSGT-LPPSISSLPNLVGITFDGN---------------------------R 160 (313)
T ss_dssp EEECCGGG----GGCTTCCEEECCSS-EEESC-CCGGGGGCTTCCEEECCSS---------------------------C
T ss_pred CCcCCHHH----hCCCCCCEEeCCCC-ccCCc-CChHHhcCCCCCeEECcCC---------------------------c
Confidence 11111111 33556666666653 22211 0111233445555555443 2
Q ss_pred CCHHHHHHhhcCC-CCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcH
Q 008973 284 LTNHAIKSLASNT-GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD 362 (547)
Q Consensus 284 l~~~~~~~l~~~~-~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~ 362 (547)
+.......+..++ +|+.|++++| .+.......+..++ |+.|++++|.++......+.. +++|+.|+++++. ++.
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~ 235 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS--DKNTQKIHLAKNS-LAF 235 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT--TSCCSEEECCSSE-ECC
T ss_pred ccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc--CCCCCEEECCCCc-eee
Confidence 2211111233444 5666666655 33333333344444 666666666554333222333 5666666666543 221
Q ss_pred HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEec
Q 008973 363 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 442 (547)
Q Consensus 363 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 442 (547)
. +..+ ..+++|++|+++++ .++...... ...+++|+.|++++| .++... ... . .+++|+.|++
T Consensus 236 ~-~~~~---~~l~~L~~L~Ls~N-~l~~~~p~~-l~~l~~L~~L~Ls~N-~l~~~i-p~~-~--------~l~~L~~l~l 298 (313)
T 1ogq_A 236 D-LGKV---GLSKNLNGLDLRNN-RIYGTLPQG-LTQLKFLHSLNVSFN-NLCGEI-PQG-G--------NLQRFDVSAY 298 (313)
T ss_dssp B-GGGC---CCCTTCCEEECCSS-CCEECCCGG-GGGCTTCCEEECCSS-EEEEEC-CCS-T--------TGGGSCGGGT
T ss_pred e-cCcc---cccCCCCEEECcCC-cccCcCChH-HhcCcCCCEEECcCC-cccccC-CCC-c--------cccccChHHh
Confidence 0 0001 12267777777773 443111111 125677777777777 343211 011 1 5677777888
Q ss_pred CCCCCC
Q 008973 443 YNCGGI 448 (547)
Q Consensus 443 ~~~~~i 448 (547)
++|+.+
T Consensus 299 ~~N~~l 304 (313)
T 1ogq_A 299 ANNKCL 304 (313)
T ss_dssp CSSSEE
T ss_pred cCCCCc
Confidence 777643
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=1.3e-13 Score=142.28 Aligned_cols=255 Identities=18% Similarity=0.110 Sum_probs=175.5
Q ss_pred CccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccC
Q 008973 128 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 207 (547)
Q Consensus 128 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 207 (547)
+++.|+++++.++. +.. ...++|++|++++|.. +. +.. .+++|++|+++++ ....++
T Consensus 41 ~l~~L~ls~n~L~~--lp~--~l~~~L~~L~L~~N~l---------~~--lp~--~l~~L~~L~Ls~N------~l~~lp 97 (622)
T 3g06_A 41 GNAVLNVGESGLTT--LPD--CLPAHITTLVIPDNNL---------TS--LPA--LPPELRTLEVSGN------QLTSLP 97 (622)
T ss_dssp CCCEEECCSSCCSC--CCS--CCCTTCSEEEECSCCC---------SC--CCC--CCTTCCEEEECSC------CCSCCC
T ss_pred CCcEEEecCCCcCc--cCh--hhCCCCcEEEecCCCC---------CC--CCC--cCCCCCEEEcCCC------cCCcCC
Confidence 46777777666542 111 0237999999999842 21 111 5689999999753 222333
Q ss_pred hHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHH
Q 008973 208 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH 287 (547)
Q Consensus 208 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 287 (547)
. .+++|++|+++++ .+... ...+++|+.|++++|. ++. +....++|++|+++++ .++..
T Consensus 98 ~--------~l~~L~~L~Ls~N-~l~~l-----~~~l~~L~~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N-~l~~l 156 (622)
T 3g06_A 98 V--------LPPGLLELSIFSN-PLTHL-----PALPSGLCKLWIFGNQ-LTS-----LPVLPPGLQELSVSDN-QLASL 156 (622)
T ss_dssp C--------CCTTCCEEEECSC-CCCCC-----CCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSCC
T ss_pred C--------CCCCCCEEECcCC-cCCCC-----CCCCCCcCEEECCCCC-CCc-----CCCCCCCCCEEECcCC-cCCCc
Confidence 2 5789999999985 44432 1157899999999863 432 2223589999999995 44432
Q ss_pred HHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHH
Q 008973 288 AIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISA 367 (547)
Q Consensus 288 ~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~ 367 (547)
+ ..+++|+.|++++| .++... ..+++|+.|++++|.++... . ..++|+.|+++++. ++.
T Consensus 157 ~----~~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~l~-----~-~~~~L~~L~L~~N~-l~~----- 215 (622)
T 3g06_A 157 P----ALPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLASLP-----T-LPSELYKLWAYNNR-LTS----- 215 (622)
T ss_dssp C----CCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCC-----C-CCTTCCEEECCSSC-CSS-----
T ss_pred C----CccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCCCC-----C-ccchhhEEECcCCc-ccc-----
Confidence 1 14678999999998 565532 46799999999999887522 2 36789999999864 442
Q ss_pred HhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCC
Q 008973 368 LFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 447 (547)
Q Consensus 368 l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 447 (547)
+... .++|+.|+++++ .++... ..+++|+.|++++| .++. +.. .+++|+.|++++|.
T Consensus 216 l~~~--~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~-----lp~--------~~~~L~~L~Ls~N~- 272 (622)
T 3g06_A 216 LPAL--PSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTS-----LPM--------LPSGLLSLSVYRNQ- 272 (622)
T ss_dssp CCCC--CTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSC-----CCC--------CCTTCCEEECCSSC-
T ss_pred cCCC--CCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCc-----CCc--------ccccCcEEeCCCCC-
Confidence 1111 278999999994 665422 36789999999999 5652 222 55889999999996
Q ss_pred CCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 448 ITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 448 i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
++.. ...+. .+++|+.|++++|+
T Consensus 273 L~~l-p~~l~--~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 273 LTRL-PESLI--HLSSETTVNLEGNP 295 (622)
T ss_dssp CCSC-CGGGG--GSCTTCEEECCSCC
T ss_pred CCcC-CHHHh--hccccCEEEecCCC
Confidence 7733 22344 48999999999997
No 75
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.42 E-value=1.2e-14 Score=138.09 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=56.9
Q ss_pred CCCccEEEccCCCCCCH-HHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCC
Q 008973 270 SLSLTHVCLRWCNLLTN-HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 348 (547)
Q Consensus 270 ~~~L~~L~l~~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~ 348 (547)
+++|++|+++++ .+.. .....+..+++|+.|++++| .++......+..+++|+.|++++|.++......+.. +++
T Consensus 149 l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~ 224 (306)
T 2z66_A 149 LSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNS 224 (306)
T ss_dssp CTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT--CTT
T ss_pred CcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC--ccc
Confidence 345555555552 2221 11122345667777777766 555544455566777777777777665433333333 667
Q ss_pred ccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCC
Q 008973 349 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNL 385 (547)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 385 (547)
|+.|+++++. ++......+.... ++|+.|+++++
T Consensus 225 L~~L~L~~N~-l~~~~~~~~~~~~--~~L~~L~L~~N 258 (306)
T 2z66_A 225 LQVLDYSLNH-IMTSKKQELQHFP--SSLAFLNLTQN 258 (306)
T ss_dssp CCEEECTTSC-CCBCSSSSCCCCC--TTCCEEECTTC
T ss_pred CCEeECCCCC-CcccCHHHHHhhh--ccCCEEEccCC
Confidence 7777777653 3322111111111 36777777774
No 76
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.41 E-value=1.3e-15 Score=145.06 Aligned_cols=178 Identities=11% Similarity=0.030 Sum_probs=117.3
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCC-CccEEEecCccCChHhHHHHHHhcCCC
Q 008973 270 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP-QLKILLLDGSDISDVGVSYLRLTVITS 348 (547)
Q Consensus 270 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~L~~L~l~~~~l~~~~l~~l~~~~~~~ 348 (547)
+++|++|+++++ .+.......+..+++|++|++++| .+.......+..++ +|+.|++++|.++......+.. ++
T Consensus 124 l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~--l~- 198 (313)
T 1ogq_A 124 IKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LN- 198 (313)
T ss_dssp CTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--CC-
T ss_pred CCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--Cc-
Confidence 455555555553 222111234567899999999998 66644456677887 9999999999877544444555 55
Q ss_pred ccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcccc
Q 008973 349 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 428 (547)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 428 (547)
|+.|+++++. ++......+ ..+++|+.|+++++ .++..... ...+++|+.|++++| .++......+.
T Consensus 199 L~~L~Ls~N~-l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~p~~l~----- 265 (313)
T 1ogq_A 199 LAFVDLSRNM-LEGDASVLF---GSDKNTQKIHLAKN-SLAFDLGK--VGLSKNLNGLDLRNN-RIYGTLPQGLT----- 265 (313)
T ss_dssp CSEEECCSSE-EEECCGGGC---CTTSCCSEEECCSS-EECCBGGG--CCCCTTCCEEECCSS-CCEECCCGGGG-----
T ss_pred ccEEECcCCc-ccCcCCHHH---hcCCCCCEEECCCC-ceeeecCc--ccccCCCCEEECcCC-cccCcCChHHh-----
Confidence 9999999864 442111111 12389999999994 55411111 235799999999999 55533222222
Q ss_pred CccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 429 DDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 429 ~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.+++|+.|++++|. ++.. +.... .+++|+.+++.+|+
T Consensus 266 ----~l~~L~~L~Ls~N~-l~~~-ip~~~--~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 ----QLKFLHSLNVSFNN-LCGE-IPQGG--NLQRFDVSAYANNK 302 (313)
T ss_dssp ----GCTTCCEEECCSSE-EEEE-CCCST--TGGGSCGGGTCSSS
T ss_pred ----cCcCCCEEECcCCc-cccc-CCCCc--cccccChHHhcCCC
Confidence 78999999999997 5532 11122 48899999999986
No 77
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.39 E-value=4.1e-13 Score=112.91 Aligned_cols=93 Identities=17% Similarity=0.293 Sum_probs=60.1
Q ss_pred CCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhcc---CCCCCccEEecCCCCCCCHHHHHHHH
Q 008973 321 PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG---TSKLQLQELDLSNLPHLSDNGILTLA 397 (547)
Q Consensus 321 ~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~~~L~~L~l~~~~~l~~~~~~~l~ 397 (547)
.+|++|++++|.+++.++..+.. +++|++|+|++|..++|.++..++.. + ++|++|++++|..|++.++..+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~--~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~--~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEG--LQYVEKIRLCKCHYIEDGCLERLSQLENLQ--KSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTT--CSCCCEEEEESCTTCCHHHHHHHHTCHHHH--HHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcC--CCCCCEEEeCCCCccCHHHHHHHHhccccc--CCCCEEEcCCCCcCCHHHHHHHh
Confidence 35677777777677777666644 67777777777766777776666542 2 35666666666666666666654
Q ss_pred hcCCCCcEEeccCCCCCCHHH
Q 008973 398 TCRVPISELRVRQCPLIGDTS 418 (547)
Q Consensus 398 ~~~~~L~~L~l~~~~~l~~~~ 418 (547)
.+++|+.|++++|+.+++.+
T Consensus 137 -~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 -HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -GCTTCCEEEEESCTTCCCHH
T ss_pred -cCCCCCEEECCCCCCCCchH
Confidence 36666666666666666654
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=2.5e-13 Score=128.78 Aligned_cols=103 Identities=25% Similarity=0.310 Sum_probs=43.7
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCC
Q 008973 218 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 297 (547)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 297 (547)
+++|++|+++++ .+... .. +..+++|+.|++++|. +++... ...+++|++|+++++ .+... ..+..+++
T Consensus 40 l~~L~~L~l~~~-~i~~l--~~-~~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTI--EG-VQYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGN-PLKNV--SAIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSC-CCSCC--GGGTTCTT
T ss_pred cCCcCEEEeeCC-CccCc--hh-hhccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccCC-cCCCc--hhhcCCCC
Confidence 345666666654 33221 11 3345555555555532 222111 233445555555542 22221 12334445
Q ss_pred CCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCC
Q 008973 298 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 334 (547)
Q Consensus 298 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 334 (547)
|+.|++++| .+... ..+..+++|++|++++|.++
T Consensus 109 L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 109 IKTLDLTST-QITDV--TPLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp CCEEECTTS-CCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCC-CCCCc--hhhcCCCCCCEEECCCCccC
Confidence 555555444 33321 22444444555555444433
No 79
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.38 E-value=6.8e-13 Score=111.57 Aligned_cols=108 Identities=19% Similarity=0.348 Sum_probs=66.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHH
Q 008973 375 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 454 (547)
Q Consensus 375 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 454 (547)
..|++|++++|. +++.++..+. .|++|+.|++++|..+||.++..++.... .+++|++|+|++|.+||+.++.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~-----~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLEN-----LQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHH-----HHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhccc-----ccCCCCEEEcCCCCcCCHHHHH
Confidence 356666776653 6666666553 56677777777776677777666664100 1345777777777667777776
Q ss_pred HhhCCCCCCCcEEEeeCCC---CH-HHHHHHHhhCCCcEee
Q 008973 455 WLKKPYFPRLRWLGVTGSV---NR-DILDALARSRPFLNVA 491 (547)
Q Consensus 455 ~l~~~~~~~L~~L~l~~~~---~~-~~~~~~~~~~~~l~~~ 491 (547)
.+.. ||+|+.|++++|+ +. ..+..+....|.+++.
T Consensus 134 ~L~~--~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~ 172 (176)
T 3e4g_A 134 ALHH--FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172 (176)
T ss_dssp HGGG--CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred HHhc--CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEE
Confidence 6654 6777777777775 11 2355566677766654
No 80
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.37 E-value=1.4e-13 Score=131.71 Aligned_cols=206 Identities=18% Similarity=0.167 Sum_probs=127.8
Q ss_pred CCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccc
Q 008973 124 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 203 (547)
Q Consensus 124 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 203 (547)
..+++|++|+++++.+.. +......+++|++|++++|.. + .....+..+++|++|+++++...
T Consensus 101 ~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l---------~-~lp~~l~~l~~L~~L~L~~n~~~----- 163 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPL---------R-ALPASIASLNRLRELSIRACPEL----- 163 (328)
T ss_dssp GGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCC---------C-CCCGGGGGCTTCCEEEEEEETTC-----
T ss_pred hhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCcc---------c-cCcHHHhcCcCCCEEECCCCCCc-----
Confidence 347788888888777662 222224678888888888742 2 11224667788888888653211
Q ss_pred cccChHH----HHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEcc
Q 008973 204 RRVNDLG----ILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLR 279 (547)
Q Consensus 204 ~~~~~~~----~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 279 (547)
..++... +......+++|++|+++++ .+. .+...+..+++|+.|++++|. ++. +...+..+++|+.|+++
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~N~-l~~--l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR--SLPASIANLQNLKSLKIRNSP-LSA--LGPAIHHLPKLEELDLR 237 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC--CCCGGGGGCTTCCEEEEESSC-CCC--CCGGGGGCTTCCEEECT
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCC-CcC--cchHhhcCCCCCCEEEccCCC-CCc--CchhhccCCCCCEEECc
Confidence 0111000 0000123778888888885 554 122235668888999888854 332 11124567889999998
Q ss_pred CCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCC
Q 008973 280 WCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 356 (547)
Q Consensus 280 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~ 356 (547)
+|...... ...+..+++|+.|++++|. +.......+..+++|++|++++|.+.......+.. +++|+.+.+..
T Consensus 238 ~n~~~~~~-p~~~~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~--L~~L~~l~l~~ 310 (328)
T 4fcg_A 238 GCTALRNY-PPIFGGRAPLKRLILKDCS-NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ--LPANCIILVPP 310 (328)
T ss_dssp TCTTCCBC-CCCTTCCCCCCEEECTTCT-TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG--SCTTCEEECCG
T ss_pred CCcchhhh-HHHhcCCCCCCEEECCCCC-chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh--ccCceEEeCCH
Confidence 86544322 2245678899999999884 33333445778899999999998665544444555 88898888765
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=3.3e-14 Score=143.73 Aligned_cols=237 Identities=16% Similarity=0.168 Sum_probs=147.7
Q ss_pred CCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccccccc
Q 008973 125 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 204 (547)
Q Consensus 125 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 204 (547)
.+++|++|+|+++.+.......+ ..+++|++|+|++|. ++. ...+..+++|++|+++++ ...
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~---------l~~--~~~l~~l~~L~~L~Ls~N------~l~ 93 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNV---------LYE--TLDLESLSTLRTLDLNNN------YVQ 93 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSC---------CEE--EEECTTCTTCCEEECCSS------EEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCC---------CCC--CcccccCCCCCEEEecCC------cCC
Confidence 35688888888877765433223 377888888888873 221 112667888888888642 122
Q ss_pred ccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCC
Q 008973 205 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 284 (547)
Q Consensus 205 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 284 (547)
.+. ..++|+.|++++| .+..... ..+++|+.|++++|. ++..... .+..+++|+.|++++ +.+
T Consensus 94 ~l~---------~~~~L~~L~L~~N-~l~~~~~----~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~Ls~-N~l 156 (487)
T 3oja_A 94 ELL---------VGPSIETLHAANN-NISRVSC----SRGQGKKNIYLANNK-ITMLRDL-DEGCRSRVQYLDLKL-NEI 156 (487)
T ss_dssp EEE---------ECTTCCEEECCSS-CCCCEEE----CCCSSCEEEECCSSC-CCSGGGB-CGGGGSSEEEEECTT-SCC
T ss_pred CCC---------CCCCcCEEECcCC-cCCCCCc----cccCCCCEEECCCCC-CCCCCch-hhcCCCCCCEEECCC-CCC
Confidence 221 2478888888885 4443321 236789999998853 4432111 224467899999998 455
Q ss_pred CHHHHHHhh-cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHH
Q 008973 285 TNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 363 (547)
Q Consensus 285 ~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~ 363 (547)
.......+. .+++|+.|++++| .++.. .....+++|+.|++++|.++..... +.. +++|+.|+++++. ++.
T Consensus 157 ~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~--l~~L~~L~Ls~N~-l~~- 228 (487)
T 3oja_A 157 DTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQS--AAGVTWISLRNNK-LVL- 228 (487)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGG--GTTCSEEECTTSC-CCE-
T ss_pred CCcChHHHhhhCCcccEEecCCC-ccccc--cccccCCCCCEEECCCCCCCCCCHh-HcC--CCCccEEEecCCc-Ccc-
Confidence 544444444 6899999999998 56553 3344689999999999987754332 333 7888888888864 442
Q ss_pred HHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEec
Q 008973 364 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRV 408 (547)
Q Consensus 364 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l 408 (547)
+.... ..+++|+.|++++ +.+....+......++.|+.+.+
T Consensus 229 -lp~~l--~~l~~L~~L~l~~-N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 229 -IEKAL--RFSQNLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp -ECTTC--CCCTTCCEEECTT-CCBCHHHHHHHHTTCHHHHHHHH
T ss_pred -cchhh--ccCCCCCEEEcCC-CCCcCcchHHHHHhCCCCcEEec
Confidence 11111 1236778888877 45554444444444555555544
No 82
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.37 E-value=1.4e-13 Score=131.84 Aligned_cols=221 Identities=20% Similarity=0.209 Sum_probs=146.8
Q ss_pred CCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccc
Q 008973 126 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 205 (547)
Q Consensus 126 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 205 (547)
.++++.|+++++.+.. ....+ ..+++|++|++++|. ++ .....+..+++|++|+++++. ...
T Consensus 80 ~~~l~~L~L~~n~l~~-lp~~l-~~l~~L~~L~L~~n~---------l~-~lp~~~~~l~~L~~L~Ls~n~------l~~ 141 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-FPDQA-FRLSHLQHMTIDAAG---------LM-ELPDTMQQFAGLETLTLARNP------LRA 141 (328)
T ss_dssp STTCCEEEEESSCCSS-CCSCG-GGGTTCSEEEEESSC---------CC-CCCSCGGGGTTCSEEEEESCC------CCC
T ss_pred ccceeEEEccCCCchh-cChhh-hhCCCCCEEECCCCC---------cc-chhHHHhccCCCCEEECCCCc------ccc
Confidence 5788899999877762 12222 258899999999974 22 112346678999999997531 223
Q ss_pred cChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHH--------HHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEE
Q 008973 206 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTI--------LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVC 277 (547)
Q Consensus 206 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 277 (547)
+... ...+++|++|++++|...... ...+ +..+++|+.|++++| .++. +...+..+++|++|+
T Consensus 142 lp~~-----l~~l~~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~--lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 142 LPAS-----IASLNRLRELSIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWT-GIRS--LPASIANLQNLKSLK 212 (328)
T ss_dssp CCGG-----GGGCTTCCEEEEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEE-CCCC--CCGGGGGCTTCCEEE
T ss_pred CcHH-----HhcCcCCCEEECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCC-CcCc--chHhhcCCCCCCEEE
Confidence 3221 256889999999986433221 1111 234889999999986 4442 222355678999999
Q ss_pred ccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCC
Q 008973 278 LRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 278 l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 357 (547)
++++ .+...+ ..+..+++|+.|++++| .+.......+..+++|+.|++++|.+.......+.. +++|+.|++++|
T Consensus 213 L~~N-~l~~l~-~~l~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--l~~L~~L~L~~n 287 (328)
T 4fcg_A 213 IRNS-PLSALG-PAIHHLPKLEELDLRGC-TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR--LTQLEKLDLRGC 287 (328)
T ss_dssp EESS-CCCCCC-GGGGGCTTCCEEECTTC-TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG--CTTCCEEECTTC
T ss_pred ccCC-CCCcCc-hhhccCCCCCEEECcCC-cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc--CCCCCEEeCCCC
Confidence 9985 444321 24668899999999998 444444456778999999999998654433333444 899999999998
Q ss_pred CCCc--HHHHHHHhccCCCCCccEEecCC
Q 008973 358 KRLT--DKCISALFDGTSKLQLQELDLSN 384 (547)
Q Consensus 358 ~~~~--~~~~~~l~~~~~~~~L~~L~l~~ 384 (547)
...+ +..+..+ ++|+.+++..
T Consensus 288 ~~~~~iP~~l~~L------~~L~~l~l~~ 310 (328)
T 4fcg_A 288 VNLSRLPSLIAQL------PANCIILVPP 310 (328)
T ss_dssp TTCCCCCGGGGGS------CTTCEEECCG
T ss_pred CchhhccHHHhhc------cCceEEeCCH
Confidence 6443 2333333 7899998886
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.36 E-value=1.2e-13 Score=131.47 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=16.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCC
Q 008973 375 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 411 (547)
Q Consensus 375 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 411 (547)
++|++|++++ +.++... . ...+++|+.|++++|
T Consensus 274 ~~L~~L~Ls~-N~l~~~p--~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 274 AKLSVLDLSY-NRLDRNP--S-PDELPQVGNLSLKGN 306 (312)
T ss_dssp SEEEEEECCS-SCCCSCC--C-TTTSCEEEEEECTTC
T ss_pred CCceEEECCC-CCCCCCh--h-HhhCCCCCEEeccCC
Confidence 4566666665 3443221 1 224566666666666
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=7.1e-14 Score=132.95 Aligned_cols=237 Identities=14% Similarity=0.059 Sum_probs=115.5
Q ss_pred CCCccEEEeeccCCChhHHHHHHh--cCCCccEEecCCCCCCCCccccccchhhhhhh--ccCCCcceEEcccccccccc
Q 008973 126 LPGIQKLCLSVDYITDAMVGTISQ--GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQI--NQHGKLKHLSLIRSQEFLIT 201 (547)
Q Consensus 126 ~~~L~~L~l~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l--~~~~~L~~L~l~~~~~~~~~ 201 (547)
...++.+.+....+++..+..+.. .+++|++|++++|. ++......+ ..+++|++|+++++.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~---------l~~~~~~~~~~~~~~~L~~L~Ls~n~----- 128 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK---------ITGTMPPLPLEATGLALSSLRLRNVS----- 128 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC---------CBSCCCCCSSSCCCBCCSSCEEESCC-----
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE---------eccchhhhhhhccCCCCCEEEeeccc-----
Confidence 345788888888888776665544 45789999999984 222222223 567778888875321
Q ss_pred ccccc-ChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccC
Q 008973 202 YFRRV-NDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW 280 (547)
Q Consensus 202 ~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 280 (547)
.... .......+ ..+++|++|+++++ .+.... ...+..+++|+.|++++|.......+...
T Consensus 129 -i~~~~~~~~~~~~-~~~~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------- 190 (310)
T 4glp_A 129 -WATGRSWLAELQQ-WLKPGLKVLSIAQA-HSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAA-------------- 190 (310)
T ss_dssp -CSSTTSSHHHHHT-TBCSCCCEEEEECC-SSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTT--------------
T ss_pred -ccchhhhhHHHHh-hhccCCCEEEeeCC-Ccchhh-HHHhccCCCCCEEECCCCCCccchhhhHH--------------
Confidence 1110 00011111 24566666666664 332211 11122344455555554322111111100
Q ss_pred CCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHH--H-hhhCCCCccEEEecCccCChHhHHHHHH-hcCCCccEEEeCC
Q 008973 281 CNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEAL--R-AISSLPQLKILLLDGSDISDVGVSYLRL-TVITSLVKLSLRG 356 (547)
Q Consensus 281 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~--~-~l~~~~~L~~L~l~~~~l~~~~l~~l~~-~~~~~L~~L~l~~ 356 (547)
..+..+++|++|++++| .++.... . .+..+++|++|++++|.++......+.. ..+++|++|++++
T Consensus 191 ---------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 191 ---------LCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp ---------SCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred ---------HhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 01124556666666665 4442211 1 1245566666666666554432111111 0125666666666
Q ss_pred CCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCH
Q 008973 357 CKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD 416 (547)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 416 (547)
+. ++. +.... .++|++|++++ +.++.... ...+++|+.|++++| .+++
T Consensus 261 N~-l~~-----lp~~~-~~~L~~L~Ls~-N~l~~~~~---~~~l~~L~~L~L~~N-~l~~ 308 (310)
T 4glp_A 261 AG-LEQ-----VPKGL-PAKLRVLDLSS-NRLNRAPQ---PDELPEVDNLTLDGN-PFLV 308 (310)
T ss_dssp SC-CCS-----CCSCC-CSCCSCEECCS-CCCCSCCC---TTSCCCCSCEECSST-TTSC
T ss_pred CC-CCc-----hhhhh-cCCCCEEECCC-CcCCCCch---hhhCCCccEEECcCC-CCCC
Confidence 43 331 11111 15777777777 45553111 135678888888877 3443
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.36 E-value=7.6e-13 Score=125.47 Aligned_cols=100 Identities=24% Similarity=0.361 Sum_probs=49.5
Q ss_pred cCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCC
Q 008973 269 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 348 (547)
Q Consensus 269 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~ 348 (547)
.+++|++|+++++ .+.... .+..+++|+.|++++| .+.+.. .+..+++|+.|++++|.+++... +.. +++
T Consensus 127 ~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~--l~~ 196 (308)
T 1h6u_A 127 GLSNLQVLYLDLN-QITNIS--PLAGLTNLQYLSIGNA-QVSDLT--PLANLSKLTTLKADDNKISDISP--LAS--LPN 196 (308)
T ss_dssp TCTTCCEEECCSS-CCCCCG--GGGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGG--CTT
T ss_pred CCCCCCEEECCCC-ccCcCc--cccCCCCccEEEccCC-cCCCCh--hhcCCCCCCEEECCCCccCcChh--hcC--CCC
Confidence 3445555555553 222211 1445566666666665 444322 25566666666666665544322 222 666
Q ss_pred ccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCC
Q 008973 349 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSN 384 (547)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 384 (547)
|+.|+++++. +++.. .+ . .+++|+.|++++
T Consensus 197 L~~L~L~~N~-l~~~~--~l-~--~l~~L~~L~l~~ 226 (308)
T 1h6u_A 197 LIEVHLKNNQ-ISDVS--PL-A--NTSNLFIVTLTN 226 (308)
T ss_dssp CCEEECTTSC-CCBCG--GG-T--TCTTCCEEEEEE
T ss_pred CCEEEccCCc-cCccc--cc-c--CCCCCCEEEccC
Confidence 6666666653 33211 11 1 226666666666
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.32 E-value=1.1e-13 Score=128.90 Aligned_cols=179 Identities=16% Similarity=0.144 Sum_probs=97.1
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccE
Q 008973 272 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 351 (547)
Q Consensus 272 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~ 351 (547)
++++|+++++ .+.......+..+++|++|+++++ .++......+..+++|++|++++|.++......+.. +++|+.
T Consensus 38 ~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~ 113 (270)
T 2o6q_A 38 DTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ--LVNLAE 113 (270)
T ss_dssp TCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT--CSSCCE
T ss_pred CCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc--ccCCCE
Confidence 4555555542 333222223445666666666665 454433344456667777777666555433332333 666777
Q ss_pred EEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCcc
Q 008973 352 LSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDR 431 (547)
Q Consensus 352 L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~ 431 (547)
|+++++. ++......+ ..+++|++|+++++ .++...... ...+++|+.|++++| .++......+.
T Consensus 114 L~l~~n~-l~~~~~~~~---~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~-------- 178 (270)
T 2o6q_A 114 LRLDRNQ-LKSLPPRVF---DSLTKLTYLSLGYN-ELQSLPKGV-FDKLTSLKELRLYNN-QLKRVPEGAFD-------- 178 (270)
T ss_dssp EECCSSC-CCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTT--------
T ss_pred EECCCCc-cCeeCHHHh---CcCcCCCEEECCCC-cCCccCHhH-ccCCcccceeEecCC-cCcEeChhHhc--------
Confidence 7776643 321111111 12267777777773 444221111 125678888888877 44432221121
Q ss_pred ccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 432 WYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 432 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.+++|+.|++++|. ++......+. .+++|+.|++.+|+
T Consensus 179 -~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 179 -KLTELKTLKLDNNQ-LKRVPEGAFD--SLEKLKMLQLQENP 216 (270)
T ss_dssp -TCTTCCEEECCSSC-CSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred -cCCCcCEEECCCCc-CCcCCHHHhc--cccCCCEEEecCCC
Confidence 66788888888886 6543333343 37888888888875
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.31 E-value=6.8e-13 Score=126.13 Aligned_cols=229 Identities=19% Similarity=0.178 Sum_probs=151.5
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHH--cCCCCcEEEecCCCCCCHHHHHHHH-hcCCCccEEEccCCCCCCH----HHHH
Q 008973 218 CASMESICLGGFCRVTDTGFKTILH--SCSNLYKLRVSHGTQLTDLVFHDIS-ATSLSLTHVCLRWCNLLTN----HAIK 290 (547)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~----~~~~ 290 (547)
...++.+.+.++ .+.+..+..+.. .+++|++|++++|. ++......++ ...++|++|+++++ .+.. ....
T Consensus 63 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHH
T ss_pred hcceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHH
Confidence 356899999985 677766655443 34789999999864 3322211121 55789999999985 4443 2223
Q ss_pred HhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChH-hHHH-HHHhcCCCccEEEeCCCCCCc--HHHHH
Q 008973 291 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDV-GVSY-LRLTVITSLVKLSLRGCKRLT--DKCIS 366 (547)
Q Consensus 291 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~-~l~~-l~~~~~~~L~~L~l~~~~~~~--~~~~~ 366 (547)
.+..+++|++|++++| .+.......+..+++|++|++++|.+... ++.. .....+++|++|++++|. ++ +....
T Consensus 140 ~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~ 217 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCA 217 (310)
T ss_dssp HTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHH
T ss_pred HhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHH
Confidence 4457899999999998 67666666777899999999999976543 2221 111148899999999975 55 22222
Q ss_pred HHhccCCCCCccEEecCCCCCCCHHHHHHHHhcC---CCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecC
Q 008973 367 ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR---VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 443 (547)
Q Consensus 367 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 443 (547)
.+.... ++|++|++++ +.++......+. .+ ++|+.|++++| .++. +... -.++|+.|+++
T Consensus 218 ~l~~~l--~~L~~L~Ls~-N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N-~l~~-----lp~~-------~~~~L~~L~Ls 280 (310)
T 4glp_A 218 ALAAAG--VQPHSLDLSH-NSLRATVNPSAP-RCMWSSALNSLNLSFA-GLEQ-----VPKG-------LPAKLRVLDLS 280 (310)
T ss_dssp HHHHHT--CCCSSEECTT-SCCCCCCCSCCS-SCCCCTTCCCEECCSS-CCCS-----CCSC-------CCSCCSCEECC
T ss_pred HHHhcC--CCCCEEECCC-CCCCccchhhHH-hccCcCcCCEEECCCC-CCCc-----hhhh-------hcCCCCEEECC
Confidence 222222 8999999999 466533111111 23 69999999998 5652 1221 33789999999
Q ss_pred CCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 444 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 444 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
+|. ++.. ..+. .+|+|+.|++++|+
T Consensus 281 ~N~-l~~~--~~~~--~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 281 SNR-LNRA--PQPD--ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCC-CCSC--CCTT--SCCCCSCEECSSTT
T ss_pred CCc-CCCC--chhh--hCCCccEEECcCCC
Confidence 997 7642 1233 48999999999885
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.29 E-value=4.1e-14 Score=132.27 Aligned_cols=110 Identities=18% Similarity=0.110 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCC
Q 008973 219 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 298 (547)
Q Consensus 219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 298 (547)
++|++|+++++ .+...... .+..+++|+.|+++++ .++..... .+..+++|++|++++ +.+.......+..+++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSY-SFFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTG-NPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTC-CCCEECTT-TTTTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTT-CCCCEECTTTTTTCTTC
T ss_pred CCccEEECCCC-cccccCHh-HhccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCC-CccCccChhhhcCCccc
Confidence 46777777774 44432111 2334566666666654 22211100 112334555555554 22322222233344455
Q ss_pred CEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCC
Q 008973 299 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 334 (547)
Q Consensus 299 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 334 (547)
++|+++++ .+.......+..+++|++|++++|.++
T Consensus 103 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 103 QKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp CEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred cEEECCCC-CccccCchhcccCCCCCEEECcCCccc
Confidence 55555444 333322222344444555555444443
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.27 E-value=9.7e-13 Score=122.36 Aligned_cols=62 Identities=24% Similarity=0.185 Sum_probs=28.0
Q ss_pred hcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCC
Q 008973 293 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 293 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 357 (547)
..+++|++|++++| .+.......+..+++|+.|++++|.++......+.. +++|+.|+++++
T Consensus 130 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N 191 (270)
T 2o6q_A 130 DSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK--LTELKTLKLDNN 191 (270)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT--CTTCCEEECCSS
T ss_pred CcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeChhHhcc--CCCcCEEECCCC
Confidence 34455555555554 343333333444555555555555444332222222 455555555543
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.26 E-value=3.8e-13 Score=125.21 Aligned_cols=170 Identities=19% Similarity=0.113 Sum_probs=84.1
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCc
Q 008973 270 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 349 (547)
Q Consensus 270 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L 349 (547)
+++|++|+++++ .+... ..+..+++|++|++++| .++......+..+++|++|++++|.++......+.. +++|
T Consensus 62 l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L 135 (272)
T 3rfs_A 62 LPNVRYLALGGN-KLHDI--SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK--LTNL 135 (272)
T ss_dssp CTTCCEEECTTS-CCCCC--GGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTTC
T ss_pred CCCCcEEECCCC-CCCCc--hhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc--CCCC
Confidence 445555555553 22221 23445666666666666 455443344556666666666666555333222233 5666
Q ss_pred cEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccC
Q 008973 350 VKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDD 429 (547)
Q Consensus 350 ~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 429 (547)
+.|+++++. ++......+ ..+++|+.|+++++ .++..... ....+++|+.|++++| .++......+.
T Consensus 136 ~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~------ 202 (272)
T 3rfs_A 136 TYLNLAHNQ-LQSLPKGVF---DKLTNLTELDLSYN-QLQSLPEG-VFDKLTQLKDLRLYQN-QLKSVPDGVFD------ 202 (272)
T ss_dssp CEEECCSSC-CCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTT------
T ss_pred CEEECCCCc-cCccCHHHh---ccCccCCEEECCCC-CcCccCHH-HhcCCccCCEEECCCC-cCCccCHHHHh------
Confidence 666666642 331110000 11256667777663 44321111 1124667777777776 34432211111
Q ss_pred ccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeC
Q 008973 430 DRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTG 471 (547)
Q Consensus 430 ~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 471 (547)
.+++|+.|++++|+ +. . .||+|+.+.++.
T Consensus 203 ---~l~~L~~L~l~~N~-~~--------~-~~~~l~~l~~~~ 231 (272)
T 3rfs_A 203 ---RLTSLQYIWLHDNP-WD--------C-TCPGIRYLSEWI 231 (272)
T ss_dssp ---TCTTCCEEECCSSC-BC--------C-CTTTTHHHHHHH
T ss_pred ---CCcCCCEEEccCCC-cc--------c-cCcHHHHHHHHH
Confidence 56777777777775 22 1 356666555443
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=3.9e-13 Score=125.56 Aligned_cols=201 Identities=15% Similarity=0.099 Sum_probs=93.0
Q ss_pred CCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEccccccccccccccc
Q 008973 127 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRV 206 (547)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 206 (547)
++|++|+++++.++......+ ..+++|++|++++|. ++......+..+++|++|+++++ ....+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~L~~n------~l~~~ 91 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCE---------IQTIEDGAYQSLSHLSTLILTGN------PIQSL 91 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTCC---------CCEECTTTTTTCTTCCEEECTTC------CCCEE
T ss_pred CCccEEECCCCcccccCHhHh-ccccCCcEEECCCCc---------CCccCHHHccCCcCCCEEECCCC------ccCcc
Confidence 467777777766655332222 356777777777762 22222223455667777776432 11111
Q ss_pred ChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCH
Q 008973 207 NDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN 286 (547)
Q Consensus 207 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 286 (547)
....+ ..+++|++|+++++ .+...... .+. .+++|++|+++++ .+..
T Consensus 92 ~~~~~----~~l~~L~~L~l~~n-~l~~~~~~-~~~--------------------------~l~~L~~L~l~~n-~l~~ 138 (276)
T 2z62_A 92 ALGAF----SGLSSLQKLVAVET-NLASLENF-PIG--------------------------HLKTLKELNVAHN-LIQS 138 (276)
T ss_dssp CTTTT----TTCTTCCEEECTTS-CCCCSTTC-CCT--------------------------TCTTCCEEECCSS-CCCC
T ss_pred Chhhh----cCCccccEEECCCC-CccccCch-hcc--------------------------cCCCCCEEECcCC-ccce
Confidence 11111 23455555555553 22211000 012 2345555555542 2222
Q ss_pred HH-HHHhhcCCCCCEEeCCCCCCCChHHHHhhhC---CCCcc-EEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCc
Q 008973 287 HA-IKSLASNTGIKVLDLRDCKNLGDEALRAISS---LPQLK-ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT 361 (547)
Q Consensus 287 ~~-~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~L~-~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~ 361 (547)
.. ...+..+++|+.|++++| .++......+.. ++.|. .|++++|.++......+ ...+|+.|+++++. ++
T Consensus 139 ~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~---~~~~L~~L~L~~n~-l~ 213 (276)
T 2z62_A 139 FKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLKELALDTNQ-LK 213 (276)
T ss_dssp CCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS---CSCCEEEEECCSSC-CS
T ss_pred ecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc---CCCcccEEECCCCc-ee
Confidence 11 123445666666666666 444433333333 33333 66666666554332211 13367777776653 33
Q ss_pred HHHHHHHhccCCCCCccEEecCC
Q 008973 362 DKCISALFDGTSKLQLQELDLSN 384 (547)
Q Consensus 362 ~~~~~~l~~~~~~~~L~~L~l~~ 384 (547)
..... ... .+++|+.|++++
T Consensus 214 ~~~~~-~~~--~l~~L~~L~l~~ 233 (276)
T 2z62_A 214 SVPDG-IFD--RLTSLQKIWLHT 233 (276)
T ss_dssp CCCTT-TTT--TCCSCCEEECCS
T ss_pred ecCHh-Hhc--ccccccEEEccC
Confidence 11111 111 126777777776
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.21 E-value=6.6e-12 Score=117.88 Aligned_cols=100 Identities=22% Similarity=0.213 Sum_probs=50.5
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCc
Q 008973 244 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 323 (547)
Q Consensus 244 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 323 (547)
+++|+.|+++++. ++... -...+++|++|+++++ .+..... +..+++|+.|++++| .+.. +..+..+++|
T Consensus 45 l~~L~~L~l~~~~-i~~~~---~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSVQ---GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN-KVKD--LSSLKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSC-CCCCT---TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCC--GGGGTTCTTC
T ss_pred cCcccEEEccCCC-cccCh---hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC-cCCC--ChhhccCCCC
Confidence 5567777776643 22211 1334556666666663 3332211 445666666666665 3443 2335556666
Q ss_pred cEEEecCccCChHhHHHHHHhcCCCccEEEeCCC
Q 008973 324 KILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 324 ~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 357 (547)
++|++++|.++.. ..+.. +++|+.|+++++
T Consensus 115 ~~L~L~~n~i~~~--~~l~~--l~~L~~L~l~~n 144 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVH--LPQLESLYLGNN 144 (291)
T ss_dssp CEEECTTSCCCCC--GGGGG--CTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcC--CCCCCEEEccCC
Confidence 6666666655442 22222 555555555554
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.21 E-value=5.6e-12 Score=111.09 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=24.0
Q ss_pred cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCC
Q 008973 294 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 356 (547)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~ 356 (547)
.+++|++|++++| .+.. +..+..+++|++|++++|.++......+.. +++|+.|++++
T Consensus 64 ~l~~L~~L~l~~n-~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~Ls~ 121 (197)
T 4ezg_A 64 YAHNIKDLTINNI-HATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG--LTSLTLLDISH 121 (197)
T ss_dssp GCTTCSEEEEESC-CCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT--CTTCCEEECCS
T ss_pred cCCCCCEEEccCC-CCCc--chhhhcCCCCCEEEeECCccCcccChhhcC--CCCCCEEEecC
Confidence 4444444444444 2222 123344445555555544444333222222 44444444444
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.20 E-value=2.2e-12 Score=120.03 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=122.7
Q ss_pred CCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCcc
Q 008973 271 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 350 (547)
Q Consensus 271 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~ 350 (547)
++|+.|.++++ .+.. +..+..+++|++|++++| .+.. +..+..+++|++|++++|.++......+.. +++|+
T Consensus 41 ~~L~~L~l~~~-~i~~--~~~l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~ 112 (272)
T 3rfs_A 41 NSIDQIIANNS-DIKS--VQGIQYLPNVRYLALGGN-KLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDK--LTNLK 112 (272)
T ss_dssp TTCCEEECTTS-CCCC--CTTGGGCTTCCEEECTTS-CCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCC
T ss_pred cceeeeeeCCC-Cccc--ccccccCCCCcEEECCCC-CCCC--chhhcCCCCCCEEECCCCccCccChhHhcC--CcCCC
Confidence 56777777774 3332 224668999999999998 5665 357789999999999999887654443444 89999
Q ss_pred EEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCc
Q 008973 351 KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDD 430 (547)
Q Consensus 351 ~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 430 (547)
.|+++++. ++......+ ..+++|++|+++++ .++..... ....+++|+.|++++| .++......+.
T Consensus 113 ~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~------- 178 (272)
T 3rfs_A 113 ELVLVENQ-LQSLPDGVF---DKLTNLTYLNLAHN-QLQSLPKG-VFDKLTNLTELDLSYN-QLQSLPEGVFD------- 178 (272)
T ss_dssp EEECTTSC-CCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTT-------
T ss_pred EEECCCCc-CCccCHHHh---ccCCCCCEEECCCC-ccCccCHH-HhccCccCCEEECCCC-CcCccCHHHhc-------
Confidence 99999975 442111111 12389999999995 56522211 1226899999999999 56643222122
Q ss_pred cccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 431 RWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 431 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.+++|+.|++++|. ++......+. .+++|+.|++.+|+
T Consensus 179 --~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 179 --KLTQLKDLRLYQNQ-LKSVPDGVFD--RLTSLQYIWLHDNP 216 (272)
T ss_dssp --TCTTCCEEECCSSC-CSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred --CCccCCEEECCCCc-CCccCHHHHh--CCcCCCEEEccCCC
Confidence 78999999999997 6653333343 48999999999985
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=1.2e-11 Score=109.05 Aligned_cols=149 Identities=14% Similarity=0.132 Sum_probs=86.5
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCc
Q 008973 244 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 323 (547)
Q Consensus 244 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 323 (547)
+++|+.|+++++ .+++.. -...+++|++|++++| .+... ..+..+++|++|++++| .++...+..+..+++|
T Consensus 43 l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~l~~n-~~~~~--~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT---GIEYAHNIKDLTINNI-HATNY--NPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT---TGGGCTTCSEEEEESC-CCSCC--GGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTC
T ss_pred cCCccEEeccCC-CccChH---HHhcCCCCCEEEccCC-CCCcc--hhhhcCCCCCEEEeECC-ccCcccChhhcCCCCC
Confidence 345555555553 222111 1334556667766664 33322 24557788888888887 6666566667788888
Q ss_pred cEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCC
Q 008973 324 KILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPI 403 (547)
Q Consensus 324 ~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 403 (547)
++|++++|.+++.....+.. +++|+.|++++|..+++.. .+ .. +++|++|++++| .+++.. ....+++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~--l~~L~~L~L~~n~~i~~~~--~l-~~--l~~L~~L~l~~n-~i~~~~---~l~~l~~L 183 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINT--LPKVNSIDLSYNGAITDIM--PL-KT--LPELKSLNIQFD-GVHDYR---GIEDFPKL 183 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTT--CSSCCEEECCSCTBCCCCG--GG-GG--CSSCCEEECTTB-CCCCCT---TGGGCSSC
T ss_pred CEEEecCCccCcHhHHHHhh--CCCCCEEEccCCCCccccH--hh-cC--CCCCCEEECCCC-CCcChH---HhccCCCC
Confidence 88888888887766666655 7778888777764343221 11 11 156666666663 343211 11245666
Q ss_pred cEEeccCC
Q 008973 404 SELRVRQC 411 (547)
Q Consensus 404 ~~L~l~~~ 411 (547)
+.|++++|
T Consensus 184 ~~L~l~~N 191 (197)
T 4ezg_A 184 NQLYAFSQ 191 (197)
T ss_dssp CEEEECBC
T ss_pred CEEEeeCc
Confidence 66666655
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.15 E-value=1.9e-11 Score=114.81 Aligned_cols=60 Identities=25% Similarity=0.328 Sum_probs=26.0
Q ss_pred cCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCC
Q 008973 269 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 334 (547)
Q Consensus 269 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 334 (547)
.+++|+.|+++++ .+.. +..+..+++|+.|++++| .+... ..+..+++|+.|++++|.++
T Consensus 88 ~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~L~~n-~i~~~--~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 88 NLKNLGWLFLDEN-KVKD--LSSLKDLKKLKSLSLEHN-GISDI--NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp TCTTCCEEECCSS-CCCC--GGGGTTCTTCCEEECTTS-CCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred cCCCCCEEECCCC-cCCC--ChhhccCCCCCEEECCCC-cCCCC--hhhcCCCCCCEEEccCCcCC
Confidence 3445555555542 2222 112344455555555544 33331 23444455555555554443
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.14 E-value=7.1e-12 Score=117.55 Aligned_cols=200 Identities=18% Similarity=0.161 Sum_probs=110.8
Q ss_pred CCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccc
Q 008973 124 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 203 (547)
Q Consensus 124 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 203 (547)
..++++++++++.+.++.-.. ...++++.|++++|. ++......+..+++|++|+++++. .
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~----~~~~~l~~L~L~~N~---------l~~~~~~~~~~l~~L~~L~L~~n~------l 67 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPP----DLPKDTTILHLSENL---------LYTFSLATLMPYTRLTQLNLDRAE------L 67 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCS----CCCTTCCEEECTTSC---------CSEEEGGGGTTCTTCCEEECTTSC------C
T ss_pred cccCCccEEECCCCCCCcCCC----CCCCCCCEEEcCCCc---------CCccCHHHhhcCCCCCEEECCCCc------c
Confidence 346778888877666553111 123578888888873 333333445667777777775321 1
Q ss_pred cccChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCC
Q 008973 204 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 283 (547)
Q Consensus 204 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 283 (547)
..+... ..+++|++|+++++ .+.. +.. ....+++|++|++++ +.
T Consensus 68 ~~~~~~------~~l~~L~~L~Ls~N-~l~~--l~~--------------------------~~~~l~~L~~L~l~~-N~ 111 (290)
T 1p9a_G 68 TKLQVD------GTLPVLGTLDLSHN-QLQS--LPL--------------------------LGQTLPALTVLDVSF-NR 111 (290)
T ss_dssp CEEECC------SCCTTCCEEECCSS-CCSS--CCC--------------------------CTTTCTTCCEEECCS-SC
T ss_pred CcccCC------CCCCcCCEEECCCC-cCCc--Cch--------------------------hhccCCCCCEEECCC-Cc
Confidence 111110 23455666665553 3221 000 122345666666665 34
Q ss_pred CCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHH
Q 008973 284 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 363 (547)
Q Consensus 284 l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~ 363 (547)
++......+..+++|+.|++++| .+.......+..+++|+.|++++|.++......+.. +++|+.|+++++. ++.
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--l~~L~~L~L~~N~-l~~- 186 (290)
T 1p9a_G 112 LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG--LENLDTLLLQENS-LYT- 186 (290)
T ss_dssp CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT--CTTCCEEECCSSC-CCC-
T ss_pred CcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccCHHHhcC--cCCCCEEECCCCc-CCc-
Confidence 43333334556777888888777 566554455667788888888887766443333333 7778888887754 431
Q ss_pred HHHHHhccCCCCCccEEecCCCC
Q 008973 364 CISALFDGTSKLQLQELDLSNLP 386 (547)
Q Consensus 364 ~~~~l~~~~~~~~L~~L~l~~~~ 386 (547)
+..-. ...++|+.|++++++
T Consensus 187 -ip~~~--~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 187 -IPKGF--FGSHLLPFAFLHGNP 206 (290)
T ss_dssp -CCTTT--TTTCCCSEEECCSCC
T ss_pred -cChhh--cccccCCeEEeCCCC
Confidence 10001 112678889998843
No 98
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=1.5e-10 Score=111.15 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=32.0
Q ss_pred CCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh---cCCCCcEEeccCCCCCCHHHHHHH
Q 008973 346 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIAL 422 (547)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l 422 (547)
+|+|+.|.+.+|. +++.....++....+++|++|+++. +.+++.+...+.. .+++|+.|++++| .+++.+...+
T Consensus 251 ~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l 327 (362)
T 2ra8_A 251 FPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKEL 327 (362)
T ss_dssp CTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHH
T ss_pred CCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHH
Confidence 4445555554432 3333333333222224455555544 3444444433332 2344555555444 3444444444
Q ss_pred H
Q 008973 423 A 423 (547)
Q Consensus 423 ~ 423 (547)
.
T Consensus 328 ~ 328 (362)
T 2ra8_A 328 Q 328 (362)
T ss_dssp H
T ss_pred H
Confidence 4
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.14 E-value=2.3e-12 Score=117.47 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=34.0
Q ss_pred CCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcc
Q 008973 127 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLI 193 (547)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 193 (547)
++|++|+++.+.++...... +..+++|++|++++|.. ++...-..+..+++|++|+++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~-~~~l~~L~~L~l~~n~~--------l~~i~~~~f~~l~~L~~L~l~ 88 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHA-FSNLPNISRIYVSIDVT--------LQQLESHSFYNLSKVTHIEIR 88 (239)
T ss_dssp TTCCEEEEESCCCSEECTTT-TTTCTTCCEEEEECCSS--------CCEECTTTEESCTTCCEEEEE
T ss_pred CcccEEEEeCCcceEECHHH-ccCCCCCcEEeCCCCCC--------cceeCHhHcCCCcCCcEEECC
Confidence 46778888777665432222 23577788888877631 222222244566777777774
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.13 E-value=1.8e-11 Score=126.24 Aligned_cols=168 Identities=23% Similarity=0.243 Sum_probs=116.5
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCC
Q 008973 243 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQ 322 (547)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 322 (547)
.+++|+.|+++++. +.... -+..+++|+.|+|+++ .+.... .+..+++|+.|+|++| .+.. +..+..+++
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~Ls~N-~l~~~~--~l~~l~~L~~L~Ls~N-~l~~--l~~l~~l~~ 110 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ---GIQYLPNVTKLFLNGN-KLTDIK--PLTNLKNLGWLFLDEN-KIKD--LSSLKDLKK 110 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT---TGGGCTTCCEEECTTS-CCCCCG--GGGGCTTCCEEECCSS-CCCC--CTTSTTCTT
T ss_pred cCCCCCEEECcCCC-CCCCh---HHccCCCCCEEEeeCC-CCCCCh--hhccCCCCCEEECcCC-CCCC--ChhhccCCC
Confidence 46889999998754 33321 2456789999999985 444322 2678899999999988 5655 346778899
Q ss_pred ccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCC
Q 008973 323 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVP 402 (547)
Q Consensus 323 L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 402 (547)
|+.|+|++|.+... ..+.. +++|+.|+|++|. ++.. ..+ ..+++|+.|+|++| .+..... ...+++
T Consensus 111 L~~L~Ls~N~l~~l--~~l~~--l~~L~~L~Ls~N~-l~~l--~~l---~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~ 176 (605)
T 1m9s_A 111 LKSLSLEHNGISDI--NGLVH--LPQLESLYLGNNK-ITDI--TVL---SRLTKLDTLSLEDN-QISDIVP---LAGLTK 176 (605)
T ss_dssp CCEEECTTSCCCCC--GGGGG--CTTCSEEECCSSC-CCCC--GGG---GSCTTCSEEECCSS-CCCCCGG---GTTCTT
T ss_pred CCEEEecCCCCCCC--ccccC--CCccCEEECCCCc-cCCc--hhh---cccCCCCEEECcCC-cCCCchh---hccCCC
Confidence 99999999877653 33444 8899999998864 5432 112 12388999999885 5543221 336888
Q ss_pred CcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCC
Q 008973 403 ISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 403 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
|+.|+|++| .+++. ..+. .+++|+.|+|++|+
T Consensus 177 L~~L~Ls~N-~i~~l--~~l~---------~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 177 LQNLYLSKN-HISDL--RALA---------GLKNLDVLELFSQE 208 (605)
T ss_dssp CCEEECCSS-CCCBC--GGGT---------TCTTCSEEECCSEE
T ss_pred CCEEECcCC-CCCCC--hHHc---------cCCCCCEEEccCCc
Confidence 999999888 56653 2222 77889999998886
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.12 E-value=1.2e-12 Score=119.29 Aligned_cols=85 Identities=11% Similarity=0.057 Sum_probs=44.7
Q ss_pred CCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCC
Q 008973 152 VSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCR 231 (547)
Q Consensus 152 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 231 (547)
++|++|++++|. ++...-..+..+++|++|+++++. ....+....+ ..+++|++|++++|+.
T Consensus 31 ~~l~~L~l~~n~---------l~~i~~~~~~~l~~L~~L~l~~n~-----~l~~i~~~~f----~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 31 PSTQTLKLIETH---------LRTIPSHAFSNLPNISRIYVSIDV-----TLQQLESHSF----YNLSKVTHIEIRNTRN 92 (239)
T ss_dssp TTCCEEEEESCC---------CSEECTTTTTTCTTCCEEEEECCS-----SCCEECTTTE----ESCTTCCEEEEEEETT
T ss_pred CcccEEEEeCCc---------ceEECHHHccCCCCCcEEeCCCCC-----CcceeCHhHc----CCCcCCcEEECCCCCC
Confidence 478999998873 333222345677888888885421 0122222111 3466777777765334
Q ss_pred CCHHHHHHHHHcCCCCcEEEecCC
Q 008973 232 VTDTGFKTILHSCSNLYKLRVSHG 255 (547)
Q Consensus 232 ~~~~~~~~~~~~~~~L~~L~l~~~ 255 (547)
+.... ...+..+++|+.|+++++
T Consensus 93 l~~i~-~~~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 93 LTYID-PDALKELPLLKFLGIFNT 115 (239)
T ss_dssp CCEEC-TTSEECCTTCCEEEEEEE
T ss_pred eeEcC-HHHhCCCCCCCEEeCCCC
Confidence 43221 112334566666666654
No 102
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.09 E-value=1.6e-11 Score=115.08 Aligned_cols=138 Identities=21% Similarity=0.124 Sum_probs=93.5
Q ss_pred cCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCC
Q 008973 269 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 348 (547)
Q Consensus 269 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~ 348 (547)
.+++|+.|+++++ .+...+ ..+..+++|++|++++| .++......|..+++|++|++++|.++......+.. +++
T Consensus 75 ~l~~L~~L~Ls~N-~l~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~ 149 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQSLP-LLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP--TPK 149 (290)
T ss_dssp CCTTCCEEECCSS-CCSSCC-CCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTT
T ss_pred CCCcCCEEECCCC-cCCcCc-hhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc--ccC
Confidence 4567777777773 443221 13457899999999998 777665567889999999999999887554433444 899
Q ss_pred ccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHH
Q 008973 349 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS 418 (547)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 418 (547)
|+.|+++++. ++......+ ..+++|+.|++++ +.++.... -....++|+.|.+++|+...+..
T Consensus 150 L~~L~L~~N~-l~~l~~~~~---~~l~~L~~L~L~~-N~l~~ip~--~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 150 LEKLSLANNN-LTELPAGLL---NGLENLDTLLLQE-NSLYTIPK--GFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCEEECTTSC-CSCCCTTTT---TTCTTCCEEECCS-SCCCCCCT--TTTTTCCCSEEECCSCCBCCSGG
T ss_pred CCEEECCCCc-CCccCHHHh---cCcCCCCEEECCC-CcCCccCh--hhcccccCCeEEeCCCCccCcCc
Confidence 9999999864 542111111 1238999999999 56652111 11146789999999997544433
No 103
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.08 E-value=3.3e-10 Score=108.76 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=84.6
Q ss_pred hcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCC--cHH---HHHH
Q 008973 293 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRL--TDK---CISA 367 (547)
Q Consensus 293 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~--~~~---~~~~ 367 (547)
..+|+|+.|.++++..+. +..+ .+++|++|++..+.++...+..++...+|+|++|+|+.+.+. .+. .+..
T Consensus 169 ~~~P~L~~L~L~g~~~l~---l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS---IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HTCTTCCEEEEECCBTCB---CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred hcCCCCcEEEEeCCCCce---eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 356677777776552221 1112 367888888887777777777776434788888877532110 111 1111
Q ss_pred HhccCCCCCccEEecCCCCCCCHHHHHHHHh--cCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCC
Q 008973 368 LFDGTSKLQLQELDLSNLPHLSDNGILTLAT--CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 445 (547)
Q Consensus 368 l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 445 (547)
+.....+|+|++|++.+| .+.+.+...++. .+++|+.|+|+.| .+++.+...+...+. .+++|+.|+|++|
T Consensus 245 ~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~-----~l~~L~~L~L~~n 317 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVD-----KIKHLKFINMKYN 317 (362)
T ss_dssp GSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHH-----HHTTCSEEECCSB
T ss_pred HHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcc-----cCCcceEEECCCC
Confidence 111112366777776663 455444444443 3456666666665 566666555553221 4566666666666
Q ss_pred CCCCHHHHHHhhC
Q 008973 446 GGITQLAFRWLKK 458 (547)
Q Consensus 446 ~~i~~~~~~~l~~ 458 (547)
. +++.++..+..
T Consensus 318 ~-i~d~~~~~l~~ 329 (362)
T 2ra8_A 318 Y-LSDEMKKELQK 329 (362)
T ss_dssp B-CCHHHHHHHHH
T ss_pred c-CCHHHHHHHHH
Confidence 4 66666655543
No 104
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.05 E-value=3.2e-09 Score=91.99 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=53.4
Q ss_pred hCCCCccEEEecCc-cCChHhHHHHHH--hcCCCccEEEeCCCCCCcHHHHHHHhcc-CCCCCccEEecCCCCCCCHHHH
Q 008973 318 SSLPQLKILLLDGS-DISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGI 393 (547)
Q Consensus 318 ~~~~~L~~L~l~~~-~l~~~~l~~l~~--~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~ 393 (547)
...++|++|++++| .+++.+...++. ...++|++|+|++|. +++.+...++.. ...++|++|++++ +.+++.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVES-NFISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHHH
Confidence 35556666666665 555555544433 123445555555432 444443333221 0013444455544 34444444
Q ss_pred HHHHhc---CCCCcEEec--cCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCC
Q 008973 394 LTLATC---RVPISELRV--RQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 394 ~~l~~~---~~~L~~L~l--~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
..+... .++|+.|++ ++| .+++.+...++.++. ..++|++|+|++|.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~-----~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLE-----KNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHH-----HCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHH-----hCCCcCEEeccCCC
Confidence 433322 234444444 334 344444444443332 33444444444443
No 105
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.05 E-value=1.7e-09 Score=93.62 Aligned_cols=121 Identities=13% Similarity=0.120 Sum_probs=79.4
Q ss_pred cCCCccEEEeCCCCCCcHHHHHHHhcc-CCCCCccEEecCCCCCCCHHHHHHHHh---cCCCCcEEeccCCCCCCHHHHH
Q 008973 345 VITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVI 420 (547)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~ 420 (547)
..+.|++|++++|..+++.++..++.. ...++|++|++++ +.+++.+...+.. ..++|+.|+|++| .+++.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHH
Confidence 467777777777645777766665543 2236777777777 4677766655443 3467777777777 67777777
Q ss_pred HHHhccccCccccCCCccEEec--CCCCCCCHHHHHHhhC--CCCCCCcEEEeeCCC
Q 008973 421 ALASMLVDDDRWYGSSIRLLDL--YNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV 473 (547)
Q Consensus 421 ~l~~~~~~~~~~~~~~L~~L~l--~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 473 (547)
.++.++. ..++|++|+| ++|. +++.+...+.. ..+++|+.|++++|.
T Consensus 112 ~l~~~L~-----~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQ-----SNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGG-----GCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHH-----hCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 7776665 5667777777 5565 77766554443 135677777777775
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.04 E-value=6e-11 Score=122.34 Aligned_cols=168 Identities=24% Similarity=0.279 Sum_probs=122.5
Q ss_pred cCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCC
Q 008973 217 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 296 (547)
Q Consensus 217 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 296 (547)
.+++|+.|.++++ .+... .. +..+++|+.|++++|. ++.... +..+++|+.|+++++ .+... ..+..++
T Consensus 41 ~L~~L~~L~l~~n-~i~~l--~~-l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~ 109 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNK-LTDIKP---LTNLKNLGWLFLDEN-KIKDL--SSLKDLK 109 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCC--TT-GGGCTTCCEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCC--TTSTTCT
T ss_pred cCCCCCEEECcCC-CCCCC--hH-HccCCCCCEEEeeCCC-CCCChh---hccCCCCCEEECcCC-CCCCC--hhhccCC
Confidence 4678999999985 44432 12 5679999999999864 333222 567889999999995 44432 3577899
Q ss_pred CCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCC
Q 008973 297 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 376 (547)
Q Consensus 297 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 376 (547)
+|+.|+|++| .+.. +..+..+++|+.|+|++|.++.. ..+.. +++|+.|+|++|. ++.... + . .+++
T Consensus 110 ~L~~L~Ls~N-~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~--l~~L~~L~Ls~N~-l~~~~~--l-~--~l~~ 176 (605)
T 1m9s_A 110 KLKSLSLEHN-GISD--INGLVHLPQLESLYLGNNKITDI--TVLSR--LTKLDTLSLEDNQ-ISDIVP--L-A--GLTK 176 (605)
T ss_dssp TCCEEECTTS-CCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGS--CTTCSEEECCSSC-CCCCGG--G-T--TCTT
T ss_pred CCCEEEecCC-CCCC--CccccCCCccCEEECCCCccCCc--hhhcc--cCCCCEEECcCCc-CCCchh--h-c--cCCC
Confidence 9999999998 5665 35678899999999999988765 33444 8999999999875 443211 2 2 2389
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCC
Q 008973 377 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 412 (547)
Q Consensus 377 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 412 (547)
|+.|+|++| .+++. .. ...+++|+.|+|++|+
T Consensus 177 L~~L~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 177 LQNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCEEECCSS-CCCBC--GG-GTTCTTCSEEECCSEE
T ss_pred CCEEECcCC-CCCCC--hH-HccCCCCCEEEccCCc
Confidence 999999995 66543 22 2368999999999984
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.04 E-value=1.8e-11 Score=112.44 Aligned_cols=155 Identities=18% Similarity=0.190 Sum_probs=70.2
Q ss_pred CCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCC
Q 008973 297 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 376 (547)
Q Consensus 297 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 376 (547)
+|+.|+++++ .+.......+..+++|++|++++|.++......+.. +++|+.|+++++. ++......+ . .+++
T Consensus 36 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~-l~~~~~~~~-~--~l~~ 108 (251)
T 3m19_A 36 DTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD--LTELGTLGLANNQ-LASLPLGVF-D--HLTQ 108 (251)
T ss_dssp TCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCCEEECTTSC-CCCCCTTTT-T--TCTT
T ss_pred CCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc--CCcCCEEECCCCc-ccccChhHh-c--ccCC
Confidence 4444444444 333333333444455555555554443322222222 4445555554432 221100000 0 1155
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHh
Q 008973 377 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 456 (547)
Q Consensus 377 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l 456 (547)
|++|++++ +.++..... ....+++|+.|++++| .++......+. .+++|+.|+|++|. ++......+
T Consensus 109 L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~~~~ 175 (251)
T 3m19_A 109 LDKLYLGG-NQLKSLPSG-VFDRLTKLKELRLNTN-QLQSIPAGAFD---------KLTNLQTLSLSTNQ-LQSVPHGAF 175 (251)
T ss_dssp CCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSC-CSCCCTTTT
T ss_pred CCEEEcCC-CcCCCcChh-HhccCCcccEEECcCC-cCCccCHHHcC---------cCcCCCEEECCCCc-CCccCHHHH
Confidence 66666665 344311111 1114566777777766 44422211111 55677777777775 553332233
Q ss_pred hCCCCCCCcEEEeeCCC
Q 008973 457 KKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 457 ~~~~~~~L~~L~l~~~~ 473 (547)
. .+++|+.|++.+|+
T Consensus 176 ~--~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 176 D--RLGKLQTITLFGNQ 190 (251)
T ss_dssp T--TCTTCCEEECCSCC
T ss_pred h--CCCCCCEEEeeCCc
Confidence 3 36777777777765
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.03 E-value=2.4e-11 Score=111.61 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=90.9
Q ss_pred CCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCcc
Q 008973 271 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 350 (547)
Q Consensus 271 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~ 350 (547)
++++.|+++++ .+.......+..+++|++|+++++ .+.......+..+++|++|++++|.++......+.. +++|+
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH--LTQLD 110 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCC
T ss_pred CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhcc--cCCCC
Confidence 35666666663 333333334556777777777776 555544455667777777777777666443333333 67777
Q ss_pred EEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCc
Q 008973 351 KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDD 430 (547)
Q Consensus 351 ~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 430 (547)
.|+++++. ++......+ ..+++|++|++++ +.++...... ...+++|+.|++++| .++......+.
T Consensus 111 ~L~L~~N~-l~~~~~~~~---~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~------- 176 (251)
T 3m19_A 111 KLYLGGNQ-LKSLPSGVF---DRLTKLKELRLNT-NQLQSIPAGA-FDKLTNLQTLSLSTN-QLQSVPHGAFD------- 176 (251)
T ss_dssp EEECCSSC-CCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTT-------
T ss_pred EEEcCCCc-CCCcChhHh---ccCCcccEEECcC-CcCCccCHHH-cCcCcCCCEEECCCC-cCCccCHHHHh-------
Confidence 77777753 431111001 1227788888887 4554221111 125788888888888 45433222222
Q ss_pred cccCCCccEEecCCCC
Q 008973 431 RWYGSSIRLLDLYNCG 446 (547)
Q Consensus 431 ~~~~~~L~~L~l~~~~ 446 (547)
.+++|+.|++++|+
T Consensus 177 --~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 177 --RLGKLQTITLFGNQ 190 (251)
T ss_dssp --TCTTCCEEECCSCC
T ss_pred --CCCCCCEEEeeCCc
Confidence 67889999998887
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.91 E-value=4.8e-10 Score=103.39 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=18.1
Q ss_pred cCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 433 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 433 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.+++|+.|++++|. ++.. ..+. .+++|+.|++++|.
T Consensus 148 ~l~~L~~L~L~~N~-i~~~--~~l~--~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 148 FLSKLEVLDLHGNE-ITNT--GGLT--RLKKVNWIDLTGQK 183 (263)
T ss_dssp GCTTCCEEECTTSC-CCBC--TTST--TCCCCCEEEEEEEE
T ss_pred cCCCCCEEECCCCc-Ccch--HHhc--cCCCCCEEeCCCCc
Confidence 45556666665554 4432 2222 25556666555553
No 110
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=4.3e-10 Score=107.66 Aligned_cols=205 Identities=15% Similarity=0.121 Sum_probs=106.6
Q ss_pred CCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccc
Q 008973 126 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 205 (547)
Q Consensus 126 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 205 (547)
|++|++|.|.. .+..-.- ..+.+|++|+.|++.++. +...+-..+..+.++..+........ .....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~-~aF~~~~~L~~l~l~~n~---------i~~i~~~aF~~~~~l~~l~~~~~~~~--~~~~~ 166 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIED-AAFKGCDNLKICQIRKKT---------APNLLPEALADSVTAIFIPLGSSDAY--RFKNR 166 (329)
T ss_dssp CTTCCC-CBCT-TCCEECT-TTTTTCTTCCEEEBCCSS---------CCEECTTSSCTTTCEEEECTTCTHHH--HTSTT
T ss_pred cCCCcEEECCc-cccchhH-HHhhcCcccceEEcCCCC---------ccccchhhhcCCCceEEecCcchhhh--hcccc
Confidence 78888888775 3332111 122378888888888763 22222234455666666665310000 00000
Q ss_pred cChHHHHHHHHcCCCCc-EEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCC
Q 008973 206 VNDLGILLMADKCASME-SICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 284 (547)
Q Consensus 206 ~~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 284 (547)
+....+ ..|.+|+ .+.+.....+... +........++..+.+.+ .+....+..+...+++|+.|++.+ +.+
T Consensus 167 i~~~~f----~~~~~L~~~i~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~-n~i 238 (329)
T 3sb4_A 167 WEHFAF----IEGEPLETTIQVGAMGKLEDE-IMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISK-TNA 238 (329)
T ss_dssp TTTSCE----EESCCCEEEEEECTTCCHHHH-HHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTT-BCC
T ss_pred cccccc----ccccccceeEEecCCCcHHHH-HhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCC-CCc
Confidence 110000 2355565 4555443222211 111111234666666664 355556665666677777777776 345
Q ss_pred CHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCcc-EEEecCccCChHhHHHHHHhcCCCccEEEeCC
Q 008973 285 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK-ILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 356 (547)
Q Consensus 285 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~-~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~ 356 (547)
...+..++..|++|+.|+++++ +...+-.+|.+|++|+ .+.+.. .++..+-.++.. |++|+.+++..
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~--c~~L~~l~l~~ 306 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMG--CDNLRYVLATG 306 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTT--CTTEEEEEECS
T ss_pred ceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhC--CccCCEEEeCC
Confidence 5555555667777777777764 5555556667777777 777766 333332233333 66777777654
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.85 E-value=1.1e-09 Score=91.58 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=59.7
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCC
Q 008973 219 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 298 (547)
Q Consensus 219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 298 (547)
++|+.|++++| .+.+..+...+..+++|+.|++++| .++.. .....+++|+.|+++++ .+.......+..+++|
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTC
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCC
Confidence 45566666554 3331111222334555666666554 22222 22233455566666553 3332111223345666
Q ss_pred CEEeCCCCCCCChH-HHHhhhCCCCccEEEecCccCChHhH---HHHHHhcCCCccEEEeC
Q 008973 299 KVLDLRDCKNLGDE-ALRAISSLPQLKILLLDGSDISDVGV---SYLRLTVITSLVKLSLR 355 (547)
Q Consensus 299 ~~L~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~l~~~~l---~~l~~~~~~~L~~L~l~ 355 (547)
++|++++| .++.. ....+..+++|++|++++|.++.... ..+.. +++|+.|+++
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL--LPQLTYLDGY 148 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH--CTTCCEETTB
T ss_pred CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH--CCCcccccCC
Confidence 66666665 44443 23445566666666666665544332 22333 5566665543
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=1.2e-09 Score=91.34 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=6.2
Q ss_pred CCCCccEEEecCccC
Q 008973 319 SLPQLKILLLDGSDI 333 (547)
Q Consensus 319 ~~~~L~~L~l~~~~l 333 (547)
.+++|+.|++++|.+
T Consensus 40 ~l~~L~~L~l~~n~l 54 (149)
T 2je0_A 40 EFEELEFLSTINVGL 54 (149)
T ss_dssp TCTTCCEEECTTSCC
T ss_pred hcCCCcEEECcCCCC
Confidence 334444444444433
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.83 E-value=8.7e-10 Score=101.63 Aligned_cols=125 Identities=19% Similarity=0.184 Sum_probs=71.9
Q ss_pred hhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhcc
Q 008973 292 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 371 (547)
Q Consensus 292 l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 371 (547)
+..+++|+.|++++| .+..... +..+++|+.|++++|.++.... .. .++|+.|+++++. ++.. ..+
T Consensus 59 l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~---~~--~~~L~~L~L~~N~-l~~~--~~l--- 124 (263)
T 1xeu_A 59 MQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLKNLNG---IP--SACLSRLFLDNNE-LRDT--DSL--- 124 (263)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCSCCTT---CC--CSSCCEEECCSSC-CSBS--GGG---
T ss_pred HhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccCCcCc---cc--cCcccEEEccCCc-cCCC--hhh---
Confidence 445666666666666 4444322 5566677777777665554221 11 2567777777653 4321 111
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCC
Q 008973 372 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 372 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
..+++|+.|++++ +.+++.. . ...+++|+.|++++| .+++. ..+. .+++|+.|++++|+
T Consensus 125 ~~l~~L~~L~Ls~-N~i~~~~--~-l~~l~~L~~L~L~~N-~i~~~--~~l~---------~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 125 IHLKNLEILSIRN-NKLKSIV--M-LGFLSKLEVLDLHGN-EITNT--GGLT---------RLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCTTCCEEECTT-SCCCBCG--G-GGGCTTCCEEECTTS-CCCBC--TTST---------TCCCCCEEEEEEEE
T ss_pred cCcccccEEECCC-CcCCCCh--H-HccCCCCCEEECCCC-cCcch--HHhc---------cCCCCCEEeCCCCc
Confidence 1226777777777 4555321 1 235778888888887 45554 1111 67788888888876
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.76 E-value=2e-10 Score=117.77 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=25.9
Q ss_pred CCCCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCC
Q 008973 124 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 162 (547)
Q Consensus 124 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 162 (547)
..+++|+.|+|+.+.+. .++.-...+++|++|+++++
T Consensus 346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENK 382 (567)
T ss_dssp STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCH
T ss_pred ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccc
Confidence 45788888888877663 34444447788888888664
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.75 E-value=6.2e-10 Score=95.11 Aligned_cols=130 Identities=17% Similarity=0.132 Sum_probs=61.3
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCC
Q 008973 219 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 298 (547)
Q Consensus 219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 298 (547)
++|+.|++++| .+.+..+...+..+++|+.|++++|. ++.. ..+..+++|++|+++++ .+.......+..+++|
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCC
Confidence 45555555553 23211122223345555566655542 2222 12233455666666553 2222111122246666
Q ss_pred CEEeCCCCCCCChH-HHHhhhCCCCccEEEecCccCChHhH---HHHHHhcCCCccEEEeCCC
Q 008973 299 KVLDLRDCKNLGDE-ALRAISSLPQLKILLLDGSDISDVGV---SYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 299 ~~L~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~l~~~~l---~~l~~~~~~~L~~L~l~~~ 357 (547)
+.|++++| .++.. .+..+..+++|+.|++++|.++.... ..+. .+++|+.|++++|
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~~L~~L~l~~n 157 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK--LLPQLTYLDGYDR 157 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT--TCSSCCEETTEET
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH--hCccCcEecCCCC
Confidence 66666666 44442 22455566666666666665544332 1222 2566666666554
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.74 E-value=9.7e-10 Score=106.59 Aligned_cols=108 Identities=24% Similarity=0.201 Sum_probs=56.7
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCcc
Q 008973 245 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 324 (547)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~ 324 (547)
+.++.|+++++ .++......+...+++|+.|++++ +.+.......+..+++|+.|++++| .+.......|..+++|+
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCC
Confidence 34677777764 333222111111455666666666 3444333334555666666666666 45544444455666666
Q ss_pred EEEecCccCChHhHHHHHHhcCCCccEEEeCCC
Q 008973 325 ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 325 ~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 357 (547)
.|++++|.++......+.. +++|+.|+++++
T Consensus 116 ~L~L~~N~i~~~~~~~~~~--l~~L~~L~L~~N 146 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFED--MAQLQKLYLSQN 146 (361)
T ss_dssp EEECCSSCCCEECTTTTTT--CTTCCEEECCSS
T ss_pred EEECCCCcccEECHHHhCC--cccCCEEECCCC
Confidence 6666666555433233333 566666666654
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.73 E-value=6.8e-11 Score=114.30 Aligned_cols=206 Identities=12% Similarity=0.113 Sum_probs=103.3
Q ss_pred CCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccc
Q 008973 126 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 205 (547)
Q Consensus 126 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 205 (547)
.+++++|+|+.|.++.-... .+..+++|++|+|++|...+ ......+.++++|+++.+... +....
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~--------~i~~~~f~~L~~l~~~l~~~~-----N~l~~ 94 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLE--------VIEADVFSNLPKLHEIRIEKA-----NNLLY 94 (350)
T ss_dssp CTTCSEEEEESCCCSEECTT-SSTTCTTCCEEEEECCTTCC--------EECTTSBCSCTTCCEEEEEEE-----TTCCE
T ss_pred CCCCCEEEccCCcCCCcCHH-HHcCCCCCCEEECcCCCCCC--------ccChhHhhcchhhhhhhcccC-----Ccccc
Confidence 35788888888777642221 22367888888888874321 111123445666665444221 11122
Q ss_pred cChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 008973 206 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 285 (547)
Q Consensus 206 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 285 (547)
+....+ ..+++|+.|+++++ .+...... .+....++..|++.++..+.......+......++.|++++ +.+.
T Consensus 95 l~~~~f----~~l~~L~~L~l~~n-~l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~ 167 (350)
T 4ay9_X 95 INPEAF----QNLPNLQYLLISNT-GIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQ 167 (350)
T ss_dssp ECTTSB----CCCTTCCEEEEEEE-CCSSCCCC-TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCC
T ss_pred cCchhh----hhcccccccccccc-ccccCCch-hhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-cccc
Confidence 222111 34677888887764 33221100 01123455666666544443322221222223566677766 3444
Q ss_pred HHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCC
Q 008973 286 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCK 358 (547)
Q Consensus 286 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~ 358 (547)
......+ ..++|+.|.+.++..++......|..+++|+.|++++|.++..... .+.+|+.|.+.++.
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~-----~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY-----GLENLKKLRARSTY 234 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS-----SCTTCCEEECTTCT
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh-----hhccchHhhhccCC
Confidence 3222112 3456677777654455554445566677777777777765543211 24455555555543
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.72 E-value=5e-10 Score=99.48 Aligned_cols=148 Identities=20% Similarity=0.158 Sum_probs=69.3
Q ss_pred CCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCC
Q 008973 296 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKL 375 (547)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 375 (547)
++|++|+++++ .+.......+..+++|++|++++|.++......+.. +++|++|+++++. ++......+ ..++
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~-l~~~~~~~~---~~l~ 100 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK--LTSLTYLNLSTNQ-LQSLPNGVF---DKLT 100 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSC-CCCCCTTTT---TTCT
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCC--CCCcCEEECCCCc-CCccCHhHh---cCcc
Confidence 45556666555 444333333455566666666665554322222222 5556666665542 221100000 1125
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHH
Q 008973 376 QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 455 (547)
Q Consensus 376 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 455 (547)
+|++|++++ +.++..... ....+++|+.|++++| .++......+. .+++|+.|++++|+ +.
T Consensus 101 ~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~~~~---------~l~~L~~L~l~~N~-~~------ 161 (208)
T 2o6s_A 101 QLKELALNT-NQLQSLPDG-VFDKLTQLKDLRLYQN-QLKSVPDGVFD---------RLTSLQYIWLHDNP-WD------ 161 (208)
T ss_dssp TCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTT---------TCTTCCEEECCSCC-BC------
T ss_pred CCCEEEcCC-CcCcccCHh-HhccCCcCCEEECCCC-ccceeCHHHhc---------cCCCccEEEecCCC-ee------
Confidence 666666666 344311111 1124667777777766 34422111111 56677777777775 21
Q ss_pred hhCCCCCCCcEEEeeCC
Q 008973 456 LKKPYFPRLRWLGVTGS 472 (547)
Q Consensus 456 l~~~~~~~L~~L~l~~~ 472 (547)
. .+|+|+.|.++.+
T Consensus 162 --~-~~~~l~~L~~~~n 175 (208)
T 2o6s_A 162 --C-TCPGIRYLSEWIN 175 (208)
T ss_dssp --C-CTTTTHHHHHHHH
T ss_pred --c-CCCCHHHHHHHHH
Confidence 1 3566666555443
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.71 E-value=1.2e-09 Score=93.32 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCCCCEEeCCCCCCCChHHH-HhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCC
Q 008973 295 NTGIKVLDLRDCKNLGDEAL-RAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 295 ~~~L~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 357 (547)
.++|+.|++++| .+.+..+ ..+..+++|+.|++++|.++.. ..+. .+++|+.|+++++
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~Ls~N 81 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLP--KLPKLKKLELSEN 81 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCC--CCSSCCEEEEESC
T ss_pred cccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhc--cCCCCCEEECcCC
Confidence 355666666665 3431111 1234556666666666555433 1122 2444555555443
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.71 E-value=8.8e-10 Score=106.92 Aligned_cols=134 Identities=19% Similarity=0.118 Sum_probs=84.0
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHH-cCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCC
Q 008973 218 CASMESICLGGFCRVTDTGFKTILH-SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 296 (547)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 296 (547)
.+.++.|+|+++ .++..... .+. .+++|+.|+++++ .++..... .+..+++|++|++++ +.+.......+..++
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~-~~~~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAE-WTPTRLTNLHSLLLSHN-HLNFISSE-AFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQ 112 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTT-SSSSCCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCS-SCCCEECTTTTTTCT
T ss_pred CCCCCEEECCCC-CCCccChh-hhhhcccccCEEECCCC-cCCccChh-hccCCCCCCEEECCC-CcCCcCCHHHhCCCc
Confidence 346888888884 55543222 122 6788888888875 34322211 234567888888888 455554444566788
Q ss_pred CCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHH-hcCCCccEEEeCCC
Q 008973 297 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRL-TVITSLVKLSLRGC 357 (547)
Q Consensus 297 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~-~~~~~L~~L~l~~~ 357 (547)
+|+.|+|++| .+.......|..+++|+.|++++|.++......+.. ..+++|+.|+++++
T Consensus 113 ~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 113 ALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 8888888887 676655566778888888888888776533322210 02566666666664
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.67 E-value=2.7e-09 Score=95.47 Aligned_cols=60 Identities=12% Similarity=-0.012 Sum_probs=30.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCC
Q 008973 375 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 375 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
++|+.|++++ +.++...... ...+++|+.|++++| .++......+. .+++|+.|++++|+
T Consensus 104 ~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 104 FSLQLLLLNA-NKINCLRVDA-FQDLHNLNLLSLYDN-KLQTIAKGTFS---------PLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTT---------TCTTCCEEECCSSC
T ss_pred CCCCEEECCC-CCCCEeCHHH-cCCCCCCCEEECCCC-cCCEECHHHHh---------CCCCCCEEEeCCCC
Confidence 4555555555 2333211111 114566777777766 34332211111 56777777777776
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.64 E-value=2e-10 Score=110.94 Aligned_cols=226 Identities=15% Similarity=0.042 Sum_probs=141.9
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCC
Q 008973 218 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 297 (547)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 297 (547)
.+++++|+|+++ .++.. ....+.++++|++|++++|...+... ...+..+++++++.+.+++.+.......+..+++
T Consensus 29 ~~~l~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp CTTCSEEEEESC-CCSEE-CTTSSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCCEEEccCC-cCCCc-CHHHHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 468999999984 66532 12235678999999999865333211 1123456777776665556766555556778999
Q ss_pred CCEEeCCCCCCCChHHHHhhhCCCCccEEEecCc-cCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCC
Q 008973 298 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 376 (547)
Q Consensus 298 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 376 (547)
|++|+++++ .+.......+....++..|++.++ .+.......+.. ....++.|+++++. ++......+ ...+
T Consensus 106 L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~-~~~~l~~L~L~~N~-i~~i~~~~f----~~~~ 178 (350)
T 4ay9_X 106 LQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG-LSFESVILWLNKNG-IQEIHNSAF----NGTQ 178 (350)
T ss_dssp CCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT-SBSSCEEEECCSSC-CCEECTTSS----TTEE
T ss_pred ccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhh-cchhhhhhcccccc-ccCCChhhc----cccc
Confidence 999999987 555443334446677888888764 554433332333 23468899998854 542111111 1267
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHh
Q 008973 377 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 456 (547)
Q Consensus 377 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l 456 (547)
|++|++.+++.++...... ...+++|+.|++++| .++... .. .+.+|+.|.+.++.+++... .+
T Consensus 179 L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N-~l~~lp-----~~-------~~~~L~~L~~l~~~~l~~lP--~l 242 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDV-FHGASGPVILDISRT-RIHSLP-----SY-------GLENLKKLRARSTYNLKKLP--TL 242 (350)
T ss_dssp EEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTS-CCCCCC-----SS-------SCTTCCEEECTTCTTCCCCC--CT
T ss_pred hhHHhhccCCcccCCCHHH-hccCcccchhhcCCC-CcCccC-----hh-------hhccchHhhhccCCCcCcCC--Cc
Confidence 9999998877665322211 126789999999999 555321 11 45678888887776654322 23
Q ss_pred hCCCCCCCcEEEeeC
Q 008973 457 KKPYFPRLRWLGVTG 471 (547)
Q Consensus 457 ~~~~~~~L~~L~l~~ 471 (547)
. .+++|+.+++..
T Consensus 243 ~--~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 E--KLVALMEASLTY 255 (350)
T ss_dssp T--TCCSCCEEECSC
T ss_pred h--hCcChhhCcCCC
Confidence 3 488999998864
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=2e-09 Score=103.00 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=28.1
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCC
Q 008973 218 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 255 (547)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 255 (547)
.++++.|.+++ .+....+..+...+++|+.|+++++
T Consensus 24 ~~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n 59 (329)
T 3sb4_A 24 ANSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNA 59 (329)
T ss_dssp HHHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEE
T ss_pred hCceeEEEEec--cccHHHHHHHHHhhccCeEEecCcc
Confidence 45799999987 4666667765555899999999975
No 124
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.64 E-value=3.6e-07 Score=78.30 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=69.6
Q ss_pred cCCCccEEEeCCCCCCcHHHHHHHhcc-CCCCCccEEecCCCCCCCHHHHHHHHh---cCCCCcEEeccCCCCCCHHHHH
Q 008973 345 VITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVI 420 (547)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~ 420 (547)
.-+.|++|+|+++..+.+.+...++.+ .....|+.|+|++ +.+++.+...++. .-+.|+.|+|++| .+++.|..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence 345566666655434666555555443 2225677777776 4666666554443 2356777777766 57777777
Q ss_pred HHHhccccCccccCCCccEEecCCCC--CCCHHHHHHhhC--CCCCCCcEEEeeCC
Q 008973 421 ALASMLVDDDRWYGSSIRLLDLYNCG--GITQLAFRWLKK--PYFPRLRWLGVTGS 472 (547)
Q Consensus 421 ~l~~~~~~~~~~~~~~L~~L~l~~~~--~i~~~~~~~l~~--~~~~~L~~L~l~~~ 472 (547)
.++.++. ..+.|++|+|++|. .+.+.+...+.. ...++|+.|++..+
T Consensus 117 ala~aL~-----~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTL-----VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTT-----TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHh-----hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 7766665 45567777776542 356554333322 12566777766654
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.64 E-value=5.1e-09 Score=94.35 Aligned_cols=131 Identities=21% Similarity=0.164 Sum_probs=57.3
Q ss_pred CCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCC
Q 008973 296 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKL 375 (547)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 375 (547)
++|+.|+++++ .+.......+..+++|+.|++++|.++......+.. +++|+.|+++++. ++...-..+ ..++
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~--l~~L~~L~Ls~N~-l~~l~~~~~---~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS--LTQLTVLDLGTNQ-LTVLPSAVF---DRLV 112 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSC-CCCCCTTTT---TTCT
T ss_pred CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc--CCCcCEEECCCCc-CCccChhHh---Ccch
Confidence 44444444444 333333333444455555555554443222221222 4445555554432 221000000 0125
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCC
Q 008973 376 QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 376 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
+|++|++++ +.++.. ..-...+++|+.|++++| .++......+. .+++|+.|++++|+
T Consensus 113 ~L~~L~Ls~-N~l~~l--p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 113 HLKELFMCC-NKLTEL--PRGIERLTHLTHLALDQN-QLKSIPHGAFD---------RLSSLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECCS-SCCCSC--CTTGGGCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCCEEECTTSC
T ss_pred hhCeEeccC-Cccccc--CcccccCCCCCEEECCCC-cCCccCHHHHh---------CCCCCCEEEeeCCC
Confidence 566666665 344311 001125667777777766 44422211111 56677777777776
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.63 E-value=2.9e-09 Score=95.25 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=41.9
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 399 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 399 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
.+++|+.|++++| .++......+. .+++|+.|+|++|. ++......+.. +++|+.|++.+|+
T Consensus 102 ~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~~~~~~--l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 102 GLFSLQLLLLNAN-KINCLRVDAFQ---------DLHNLNLLSLYDNK-LQTIAKGTFSP--LRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSC-CSCCCTTTTTT--CTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-CCCEeCHHHcC---------CCCCCCEEECCCCc-CCEECHHHHhC--CCCCCEEEeCCCC
Confidence 5788888888888 45543222222 67788888888886 65544334443 7888888888886
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.62 E-value=6.8e-09 Score=106.38 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=21.4
Q ss_pred CcccceeeccCCCCCchHHHHHHHhcCCCCceeecCc
Q 008973 3 RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGS 39 (547)
Q Consensus 3 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 39 (547)
.++|+.|+|+++. +. .++.-..+|++|+.|++++
T Consensus 348 ~~~L~~L~Ls~n~-L~--~Lp~~i~~l~~L~~L~l~~ 381 (567)
T 1dce_A 348 DEQLFRCELSVEK-ST--VLQSELESCKELQELEPEN 381 (567)
T ss_dssp TTTSSSCCCCHHH-HH--HHHHHHHHHHHHHHHCTTC
T ss_pred CccceeccCChhh-HH--hhHHHHHHHHHHHHhcccc
Confidence 3567777777765 32 3443335777888888764
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.62 E-value=5.8e-09 Score=93.98 Aligned_cols=132 Identities=17% Similarity=0.136 Sum_probs=76.2
Q ss_pred CCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhc
Q 008973 320 LPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATC 399 (547)
Q Consensus 320 ~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 399 (547)
.++|+.|++++|.++......+.. +++|+.|+++++. ++......+ ..+++|+.|++++ +.++..... ....
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~L~~N~-l~~i~~~~~---~~l~~L~~L~Ls~-N~l~~l~~~-~~~~ 110 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDS--LINLKELYLGSNQ-LGALPVGVF---DSLTQLTVLDLGT-NQLTVLPSA-VFDR 110 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSC-CCCCCTTTT---TTCTTCCEEECCS-SCCCCCCTT-TTTT
T ss_pred CCCCCEEEcCCCccCccCHHHhhC--ccCCcEEECCCCC-CCCcChhhc---ccCCCcCEEECCC-CcCCccChh-HhCc
Confidence 377888888887766543333333 7778888887754 431111101 1227788888887 455422111 1125
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 400 RVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 400 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
+++|+.|++++| .++... ..+ . .+++|+.|+|++|. ++......+. .+++|+.|++.+|+
T Consensus 111 l~~L~~L~Ls~N-~l~~lp-~~~-~--------~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 111 LVHLKELFMCCN-KLTELP-RGI-E--------RLTHLTHLALDQNQ-LKSIPHGAFD--RLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCCEEECCSS-CCCSCC-TTG-G--------GCTTCSEEECCSSC-CCCCCTTTTT--TCTTCCEEECTTSC
T ss_pred chhhCeEeccCC-cccccC-ccc-c--------cCCCCCEEECCCCc-CCccCHHHHh--CCCCCCEEEeeCCC
Confidence 677888888877 454221 111 1 66778888888775 6543333333 37788888887775
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.62 E-value=4.4e-08 Score=99.91 Aligned_cols=167 Identities=21% Similarity=0.159 Sum_probs=104.5
Q ss_pred CCCccEEEeeccCCChhHHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccc
Q 008973 126 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 205 (547)
Q Consensus 126 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 205 (547)
+++|++|++++|.++. +. ..+++|++|++++|.. +. ++.+.. +|++|+++++ ....
T Consensus 79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l---------~~--ip~l~~--~L~~L~Ls~N------~l~~ 134 (571)
T 3cvr_A 79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRL---------ST--LPELPA--SLKHLDVDNN------QLTM 134 (571)
T ss_dssp CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCC---------SC--CCCCCT--TCCEEECCSS------CCSC
T ss_pred cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCC---------CC--cchhhc--CCCEEECCCC------cCCC
Confidence 4789999999887764 22 3578999999998742 21 111222 8889988642 2222
Q ss_pred cChHHHHHHHHcCCCCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCC
Q 008973 206 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 285 (547)
Q Consensus 206 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 285 (547)
++. .+++|+.|+++++ .++.. .. .+++|+.|++++|. ++..+. + .++|+.|+++++ .++
T Consensus 135 lp~--------~l~~L~~L~Ls~N-~l~~l--p~---~l~~L~~L~Ls~N~-L~~lp~--l---~~~L~~L~Ls~N-~L~ 193 (571)
T 3cvr_A 135 LPE--------LPALLEYINADNN-QLTML--PE---LPTSLEVLSVRNNQ-LTFLPE--L---PESLEALDVSTN-LLE 193 (571)
T ss_dssp CCC--------CCTTCCEEECCSS-CCSCC--CC---CCTTCCEEECCSSC-CSCCCC--C---CTTCCEEECCSS-CCS
T ss_pred CCC--------cCccccEEeCCCC-ccCcC--CC---cCCCcCEEECCCCC-CCCcch--h---hCCCCEEECcCC-CCC
Confidence 332 4688999999885 44431 11 46788999988864 333111 1 168888888884 454
Q ss_pred HHHHHHhhcCCCC-------CEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHH
Q 008973 286 NHAIKSLASNTGI-------KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRL 343 (547)
Q Consensus 286 ~~~~~~l~~~~~L-------~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~ 343 (547)
..+. +.. +| +.|++++| .++... ..+..+++|+.|++++|.++......+..
T Consensus 194 ~lp~--~~~--~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 194 SLPA--VPV--RNHHSEETEIFFRCREN-RITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SCCC--CC----------CCEEEECCSS-CCCCCC-GGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred chhh--HHH--hhhcccccceEEecCCC-cceecC-HHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 3221 221 55 88888887 566432 23456888888888888887765554443
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.60 E-value=4.3e-09 Score=107.31 Aligned_cols=17 Identities=6% Similarity=-0.113 Sum_probs=8.5
Q ss_pred cCCCccEEecCCCCCCCH
Q 008973 433 YGSSIRLLDLYNCGGITQ 450 (547)
Q Consensus 433 ~~~~L~~L~l~~~~~i~~ 450 (547)
.+++|+.|+|++|+ ++.
T Consensus 228 ~l~~L~~L~L~~N~-l~~ 244 (571)
T 3cvr_A 228 SLDPTCTIILEDNP-LSS 244 (571)
T ss_dssp GSCTTEEEECCSSS-CCH
T ss_pred cCCCCCEEEeeCCc-CCC
Confidence 34455555555554 444
No 131
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.58 E-value=9e-09 Score=91.27 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=50.9
Q ss_pred hhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhcc
Q 008973 292 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 371 (547)
Q Consensus 292 l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 371 (547)
+..+++|++|+++++ .+.......+..+++|++|++++|.++......+.. +++|+.|+++++. ++......+
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~~~~~~~--- 120 (208)
T 2o6s_A 48 FDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--LTQLKELALNTNQ-LQSLPDGVF--- 120 (208)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSC-CCCCCTTTT---
T ss_pred hcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--ccCCCEEEcCCCc-CcccCHhHh---
Confidence 334555555555555 444333333445556666666555544322222222 5556666665542 321100000
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCC
Q 008973 372 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 412 (547)
Q Consensus 372 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 412 (547)
..+++|++|++++ +.++.... .....+++|+.|++++|+
T Consensus 121 ~~l~~L~~L~l~~-N~l~~~~~-~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 121 DKLTQLKDLRLYQ-NQLKSVPD-GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCTTCCEEECCS-SCCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred ccCCcCCEEECCC-CccceeCH-HHhccCCCccEEEecCCC
Confidence 1125666666666 33431111 111245667777776663
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.56 E-value=5.3e-09 Score=93.53 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=15.0
Q ss_pred cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccC
Q 008973 294 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 333 (547)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l 333 (547)
.+++|++|++++| .+.......+..+++|+.|++++|.+
T Consensus 103 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 103 GLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp TCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred CCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcC
Confidence 3344444444443 23322223333344444444444433
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.52 E-value=5.6e-08 Score=83.49 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=27.3
Q ss_pred CCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCC
Q 008973 297 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 297 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 357 (547)
+|+.|++++| .++.. ..+..+++|+.|++++|.++......+.. +++|+.|+++++
T Consensus 43 ~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N 98 (176)
T 1a9n_A 43 QFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA--LPDLTELILTNN 98 (176)
T ss_dssp CCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH--CTTCCEEECCSC
T ss_pred CCCEEECCCC-CCCcc--cccccCCCCCEEECCCCcccccCcchhhc--CCCCCEEECCCC
Confidence 5666666555 44432 34445556666666665554322111122 455555555553
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.52 E-value=1.9e-08 Score=86.46 Aligned_cols=84 Identities=12% Similarity=0.060 Sum_probs=38.5
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHH-HHhhhCCCCccEEEecCccCChHhHH---HHHHhc
Q 008973 270 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEA-LRAISSLPQLKILLLDGSDISDVGVS---YLRLTV 345 (547)
Q Consensus 270 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~~l~~~~l~---~l~~~~ 345 (547)
+++|+.|+++++ .+...+...+..+++|+.|++++| .+.... +..+..+++|+.|++++|.++..... .+..
T Consensus 63 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~-- 138 (176)
T 1a9n_A 63 LRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK-- 138 (176)
T ss_dssp CSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH--
T ss_pred CCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHH--
Confidence 345555555552 333221111234556666666655 343322 23445566666666666654332111 1222
Q ss_pred CCCccEEEeCCC
Q 008973 346 ITSLVKLSLRGC 357 (547)
Q Consensus 346 ~~~L~~L~l~~~ 357 (547)
+++|+.|+++.+
T Consensus 139 l~~L~~Ld~~~n 150 (176)
T 1a9n_A 139 VPQVRVLDFQKV 150 (176)
T ss_dssp CTTCSEETTEEC
T ss_pred CCccceeCCCcC
Confidence 555555555543
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.52 E-value=1.2e-08 Score=91.13 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=52.6
Q ss_pred hcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccC
Q 008973 293 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 372 (547)
Q Consensus 293 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 372 (547)
..+++|+.|+++++ .++......+..+++|++|++++|.++......+.. +++|+.|+++++. ++......+ .
T Consensus 54 ~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~Ls~N~-l~~~~~~~~---~ 126 (220)
T 2v70_A 54 KKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG--LESLKTLMLRSNR-ITCVGNDSF---I 126 (220)
T ss_dssp GGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT--CSSCCEEECTTSC-CCCBCTTSS---T
T ss_pred ccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC--CcCCCEEECCCCc-CCeECHhHc---C
Confidence 34555555555555 344433334455555555555555544333222322 5555555555542 221100001 1
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCC
Q 008973 373 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 412 (547)
Q Consensus 373 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 412 (547)
.+++|+.|++++ +.++......+ ..+++|+.|++++|+
T Consensus 127 ~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 127 GLSSVRLLSLYD-NQITTVAPGAF-DTLHSLSTLNLLANP 164 (220)
T ss_dssp TCTTCSEEECTT-SCCCCBCTTTT-TTCTTCCEEECCSCC
T ss_pred CCccCCEEECCC-CcCCEECHHHh-cCCCCCCEEEecCcC
Confidence 125666666666 34432211111 146777777777775
No 136
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.46 E-value=2.6e-06 Score=72.99 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=76.7
Q ss_pred CCCCccEEEecCc-cCChHhHHHHHH--hcCCCccEEEeCCCCCCcHHHHHHHhcc-CCCCCccEEecCCCCCCCHHHHH
Q 008973 319 SLPQLKILLLDGS-DISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGIL 394 (547)
Q Consensus 319 ~~~~L~~L~l~~~-~l~~~~l~~l~~--~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~ 394 (547)
.-+.|++|+|+++ .+.+.+...++. ..-+.|+.|+|++|. +++.+...++.. ...+.|++|+|++ +.|++.+..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES-NFLTPELLA 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHHH
Confidence 4566666666664 666666555543 124557777777653 666665554432 1116788888887 677777777
Q ss_pred HHHhcC---CCCcEEeccCCC--CCCHHHHHHHHhccccCccccCCCccEEecCCCC
Q 008973 395 TLATCR---VPISELRVRQCP--LIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 446 (547)
Q Consensus 395 ~l~~~~---~~L~~L~l~~~~--~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 446 (547)
.+...+ +.|+.|+|+++. .+.+.+...++.++. ..+.|+.|+++.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~-----~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-----ENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-----HCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH-----hCCCcCeEeccCCC
Confidence 776654 458888887542 467777666666555 66778888887654
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.46 E-value=9.9e-09 Score=90.19 Aligned_cols=37 Identities=30% Similarity=0.306 Sum_probs=17.0
Q ss_pred hhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCC
Q 008973 317 ISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 317 l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 357 (547)
+..+++|+.|++++|.++... .+.. +++|+.|+++++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~--l~~L~~L~l~~n 80 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSG--MENLRILSLGRN 80 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHH--HTTCCEEEEEEE
T ss_pred HhcCCCCCEEECCCCCCcccc--cccc--CCCCCEEECCCC
Confidence 344555555555555444322 2222 445555555443
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.42 E-value=4.5e-09 Score=102.82 Aligned_cols=214 Identities=13% Similarity=0.199 Sum_probs=115.9
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCC
Q 008973 220 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 299 (547)
Q Consensus 220 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~ 299 (547)
+|+.+.+.. .+...+- ..+.+|++|+.+++..+ .++..+...+. +.+|+.+.+.. .+...+..++..|++|+
T Consensus 158 ~L~~i~lp~--~l~~I~~-~aF~~c~~L~~l~l~~n-~l~~I~~~aF~--~~~L~~l~lp~--~l~~I~~~aF~~~~~L~ 229 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKE-DIFYYCYNLKKADLSKT-KITKLPASTFV--YAGIEEVLLPV--TLKEIGSQAFLKTSQLK 229 (401)
T ss_dssp CCCEEECCT--TCCEECS-STTTTCTTCCEEECTTS-CCSEECTTTTT--TCCCSEEECCT--TCCEECTTTTTTCTTCC
T ss_pred CceEEEeCC--CccEehH-HHhhCcccCCeeecCCC-cceEechhhEe--ecccCEEEeCC--chheehhhHhhCCCCCC
Confidence 577776654 2221111 12455777777777652 22221111111 46788888865 24444445667788888
Q ss_pred EEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCC-------CcHHHHHHHhccC
Q 008973 300 VLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKR-------LTDKCISALFDGT 372 (547)
Q Consensus 300 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~-------~~~~~~~~l~~~~ 372 (547)
.+.+.. .+...+..+|.. .+|+.+.+..+ ++..+-.++. .|++|+.+.+.+... +.+. .+.+|
T Consensus 230 ~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~--~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c 299 (401)
T 4fdw_A 230 TIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFY--YCPELAEVTTYGSTFNDDPEAMIHPY----CLEGC 299 (401)
T ss_dssp CEECCT--TCCEECTTTTTT-CCCSEEEEETT-CCEECTTTTT--TCTTCCEEEEESSCCCCCTTCEECTT----TTTTC
T ss_pred EEecCC--CccCcccccccc-CCccEEEeCCC-ccEEChhHhh--CCCCCCEEEeCCccccCCcccEECHH----HhhCC
Confidence 888876 355555555656 67888888553 2222222333 378888888866321 1111 12233
Q ss_pred CCCCccEEecCCC-CCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHH
Q 008973 373 SKLQLQELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 451 (547)
Q Consensus 373 ~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 451 (547)
++|+.+.+... ..+....+. .|++|+.+.+..+ ++..+-..+. .| +|+.|.+.++. +...
T Consensus 300 --~~L~~l~l~~~i~~I~~~aF~----~c~~L~~l~lp~~--l~~I~~~aF~---------~~-~L~~l~l~~n~-~~~l 360 (401)
T 4fdw_A 300 --PKLARFEIPESIRILGQGLLG----GNRKVTQLTIPAN--VTQINFSAFN---------NT-GIKEVKVEGTT-PPQV 360 (401)
T ss_dssp --TTCCEECCCTTCCEECTTTTT----TCCSCCEEEECTT--CCEECTTSSS---------SS-CCCEEEECCSS-CCBC
T ss_pred --ccCCeEEeCCceEEEhhhhhc----CCCCccEEEECcc--ccEEcHHhCC---------CC-CCCEEEEcCCC-Cccc
Confidence 77888888741 122233333 6788888888543 3322222222 66 88888888775 3322
Q ss_pred HHHHhhCCCCC-CCcEEEeeCC
Q 008973 452 AFRWLKKPYFP-RLRWLGVTGS 472 (547)
Q Consensus 452 ~~~~l~~~~~~-~L~~L~l~~~ 472 (547)
.-..|.. +| +++.|.+...
T Consensus 361 ~~~~F~~--~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 361 FEKVWYG--FPDDITVIRVPAE 380 (401)
T ss_dssp CCSSCCC--SCTTCCEEEECGG
T ss_pred ccccccC--CCCCccEEEeCHH
Confidence 2222332 54 6777777543
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.37 E-value=4e-08 Score=96.09 Aligned_cols=61 Identities=7% Similarity=0.178 Sum_probs=30.1
Q ss_pred HhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCC
Q 008973 291 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 357 (547)
Q Consensus 291 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 357 (547)
++..|++|+.+.+.. .+...+-.+|.+|++|+.+.+..+ ++..+-.++.. | +|+.+.+.++
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~--~-~L~~l~l~~n 355 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN--T-GIKEVKVEGT 355 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS--S-CCCEEEECCS
T ss_pred HhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC--C-CCCEEEEcCC
Confidence 344566666666653 344444455556666666666443 22222222222 4 5666666553
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.36 E-value=4.3e-08 Score=86.04 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=66.1
Q ss_pred HhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcH-HHHHHHh
Q 008973 291 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KCISALF 369 (547)
Q Consensus 291 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~-~~~~~l~ 369 (547)
.+..+++|++|++++| .+... ..+..+++|+.|++++|.++... .... .+++|+.|+++++. ++. ..+..+
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l--~~~~~l~~L~~L~l~~n~l~~l~--~~~~-~~~~L~~L~L~~N~-l~~l~~~~~l- 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKI--SSLSGMENLRILSLGRNLIKKIE--NLDA-VADTLEELWISYNQ-IASLSGIEKL- 114 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCC--CCHHHHTTCCEEEEEEEEECSCS--SHHH-HHHHCSEEEEEEEE-CCCHHHHHHH-
T ss_pred HHhcCCCCCEEECCCC-CCccc--cccccCCCCCEEECCCCCccccc--chhh-cCCcCCEEECcCCc-CCcCCccccC-
Confidence 4556788888888877 55542 26667888999999888766322 1122 25678888887753 432 233333
Q ss_pred ccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCC
Q 008973 370 DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 411 (547)
Q Consensus 370 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 411 (547)
++|++|++++ +.++..........+++|+.|++++|
T Consensus 115 -----~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 115 -----VNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp -----HHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred -----CCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCC
Confidence 6777777777 45553322122235677777777777
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=7.8e-09 Score=101.54 Aligned_cols=163 Identities=10% Similarity=0.124 Sum_probs=77.7
Q ss_pred CCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCcc
Q 008973 271 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 350 (547)
Q Consensus 271 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~ 350 (547)
.+|+.+.+... +...+..++..+.+|+.+.+... +...+...+..++.++.+......+.+..+. .+.+|+
T Consensus 230 ~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~-----~~~~L~ 300 (394)
T 4fs7_A 230 TGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVPEKTFY-----GCSSLT 300 (394)
T ss_dssp CCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEECTTTTT-----TCTTCC
T ss_pred CCCceEEECCC--ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeecccccc-----cccccc
Confidence 45666665441 12222223446677777777553 3333334455677777776665544433221 366677
Q ss_pred EEEeCCCCCCcHHHHHHHhccCCCCCccEEecCC-CCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccC
Q 008973 351 KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSN-LPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDD 429 (547)
Q Consensus 351 ~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 429 (547)
.+.+... ++..+-.. +.+| .+|+.+++.. ...|.+..+. .|.+|+.+.+..+ ++..+-.++.
T Consensus 301 ~i~l~~~--i~~I~~~a-F~~c--~~L~~i~lp~~v~~I~~~aF~----~c~~L~~i~lp~~--l~~I~~~aF~------ 363 (394)
T 4fs7_A 301 EVKLLDS--VKFIGEEA-FESC--TSLVSIDLPYLVEEIGKRSFR----GCTSLSNINFPLS--LRKIGANAFQ------ 363 (394)
T ss_dssp EEEECTT--CCEECTTT-TTTC--TTCCEECCCTTCCEECTTTTT----TCTTCCEECCCTT--CCEECTTTBT------
T ss_pred ccccccc--cceechhh-hcCC--CCCCEEEeCCcccEEhHHhcc----CCCCCCEEEECcc--ccEehHHHhh------
Confidence 7766542 22111111 1223 5677776653 1122222332 5677777776543 3222211111
Q ss_pred ccccCCCccEEecCCCCCCCHHHHHHhhCCCCCCCcEE
Q 008973 430 DRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWL 467 (547)
Q Consensus 430 ~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L 467 (547)
+|++|+.+++..+ ++... ..|. .|++|+.+
T Consensus 364 ---~C~~L~~i~lp~~--~~~~~-~~F~--~c~~L~~I 393 (394)
T 4fs7_A 364 ---GCINLKKVELPKR--LEQYR-YDFE--DTTKFKWI 393 (394)
T ss_dssp ---TCTTCCEEEEEGG--GGGGG-GGBC--TTCEEEEE
T ss_pred ---CCCCCCEEEECCC--CEEhh-heec--CCCCCcEE
Confidence 6677777777543 22221 1233 36666654
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.25 E-value=3.4e-07 Score=79.76 Aligned_cols=39 Identities=31% Similarity=0.330 Sum_probs=16.2
Q ss_pred cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccC
Q 008973 294 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 333 (547)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l 333 (547)
.+++|+.|++++| .+.......|..+++|+.|++++|.+
T Consensus 76 ~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 76 NMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp TCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCC
Confidence 3444444444444 33333333334444444444444433
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.21 E-value=1.6e-07 Score=81.81 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=15.0
Q ss_pred cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccC
Q 008973 294 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 333 (547)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l 333 (547)
.+++|++|+++++ .+.......+..+++|++|++++|.+
T Consensus 76 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 76 GASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp TCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred CcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcC
Confidence 3344444444443 33332222233344444444444433
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.16 E-value=3.8e-08 Score=96.61 Aligned_cols=145 Identities=11% Similarity=0.152 Sum_probs=83.9
Q ss_pred CCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCc--cCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccC
Q 008973 295 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS--DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 372 (547)
Q Consensus 295 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~--~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 372 (547)
+.+|+.+.+.. .+...+-.++..+..|+.+.+..+ .+....+ . .++.++.+..... .+.+. .+..|
T Consensus 229 ~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F---~--~~~~l~~~~~~~~-~i~~~----~F~~~ 296 (394)
T 4fs7_A 229 KTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLRIGGSLF---Y--NCSGLKKVIYGSV-IVPEK----TFYGC 296 (394)
T ss_dssp TCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCEECSCTT---T--TCTTCCEEEECSS-EECTT----TTTTC
T ss_pred cCCCceEEECC--CceecccccccccccceeEEcCCCcceeecccc---c--cccccceeccCce-eeccc----ccccc
Confidence 45566666543 233333344556777777777654 2222221 1 3666666665442 12211 12233
Q ss_pred CCCCccEEecCCC-CCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHH
Q 008973 373 SKLQLQELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 451 (547)
Q Consensus 373 ~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 451 (547)
.+|+.+.+... ..|.+..+. .|.+|+.+.+... ++..+-.++. +|.+|+.+.+..+ ++..
T Consensus 297 --~~L~~i~l~~~i~~I~~~aF~----~c~~L~~i~lp~~--v~~I~~~aF~---------~c~~L~~i~lp~~--l~~I 357 (394)
T 4fs7_A 297 --SSLTEVKLLDSVKFIGEEAFE----SCTSLVSIDLPYL--VEEIGKRSFR---------GCTSLSNINFPLS--LRKI 357 (394)
T ss_dssp --TTCCEEEECTTCCEECTTTTT----TCTTCCEECCCTT--CCEECTTTTT---------TCTTCCEECCCTT--CCEE
T ss_pred --ccccccccccccceechhhhc----CCCCCCEEEeCCc--ccEEhHHhcc---------CCCCCCEEEECcc--ccEe
Confidence 78999888652 223333333 7899999999643 4333222222 8899999999765 6655
Q ss_pred HHHHhhCCCCCCCcEEEeeCC
Q 008973 452 AFRWLKKPYFPRLRWLGVTGS 472 (547)
Q Consensus 452 ~~~~l~~~~~~~L~~L~l~~~ 472 (547)
+-.+|.. |++|+.+.+..+
T Consensus 358 ~~~aF~~--C~~L~~i~lp~~ 376 (394)
T 4fs7_A 358 GANAFQG--CINLKKVELPKR 376 (394)
T ss_dssp CTTTBTT--CTTCCEEEEEGG
T ss_pred hHHHhhC--CCCCCEEEECCC
Confidence 5566765 999999998765
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.12 E-value=1.1e-06 Score=76.60 Aligned_cols=80 Identities=24% Similarity=0.286 Sum_probs=37.5
Q ss_pred CccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccE
Q 008973 272 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 351 (547)
Q Consensus 272 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~ 351 (547)
+|++|++++ +.+...+ ..+..+++|+.|+++++ .++......|..+++|+.|++++|.++......+.. +++|+.
T Consensus 32 ~l~~L~L~~-n~i~~ip-~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~--l~~L~~ 106 (193)
T 2wfh_A 32 DVTELYLDG-NQFTLVP-KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--LKSLRL 106 (193)
T ss_dssp TCCEEECCS-SCCCSCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT--CTTCCE
T ss_pred CCCEEECCC-CcCchhH-HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCC--CCCCCE
Confidence 455555554 2333221 23445556666666555 444444444555566666666665544332222222 444444
Q ss_pred EEeCC
Q 008973 352 LSLRG 356 (547)
Q Consensus 352 L~l~~ 356 (547)
|++++
T Consensus 107 L~L~~ 111 (193)
T 2wfh_A 107 LSLHG 111 (193)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 44444
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.06 E-value=1.3e-06 Score=74.97 Aligned_cols=14 Identities=7% Similarity=0.230 Sum_probs=8.2
Q ss_pred cCCCCcEEeccCCC
Q 008973 399 CRVPISELRVRQCP 412 (547)
Q Consensus 399 ~~~~L~~L~l~~~~ 412 (547)
.+++|+.|++++|+
T Consensus 122 ~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 122 RLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCcccCEEEecCCC
Confidence 35566666666664
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.05 E-value=1.1e-06 Score=75.41 Aligned_cols=9 Identities=22% Similarity=0.172 Sum_probs=4.0
Q ss_pred CCcEEEEcC
Q 008973 220 SMESICLGG 228 (547)
Q Consensus 220 ~L~~L~l~~ 228 (547)
+|++|++++
T Consensus 29 ~l~~L~l~~ 37 (177)
T 2o6r_A 29 SATRLELES 37 (177)
T ss_dssp TCSEEECCS
T ss_pred CCcEEEeCC
Confidence 444444444
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.01 E-value=4.6e-07 Score=78.92 Aligned_cols=89 Identities=19% Similarity=0.164 Sum_probs=56.8
Q ss_pred HcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCC
Q 008973 242 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP 321 (547)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 321 (547)
..+++|+.|+++++ .++.... ..+..+++|++|++++ +.+.......+..+++|++|++++| .++......+..++
T Consensus 51 ~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 51 GRLPHLVKLELKRN-QLTGIEP-NAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLN 126 (192)
T ss_dssp GGCTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCT
T ss_pred ccCCCCCEEECCCC-CCCCcCH-hHcCCcccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCC
Confidence 34555666666553 2221111 1123456677777776 4444433334567899999999998 67766566677899
Q ss_pred CccEEEecCccCC
Q 008973 322 QLKILLLDGSDIS 334 (547)
Q Consensus 322 ~L~~L~l~~~~l~ 334 (547)
+|++|++++|.+.
T Consensus 127 ~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 127 SLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEeCCCCcc
Confidence 9999999998665
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.92 E-value=1.2e-06 Score=85.88 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=26.2
Q ss_pred CccEEEeec--cCCChhHHHHHHhcCCCccEEecCCC-CCCCCccccccchhhhhhhccCCCcceEEc
Q 008973 128 GIQKLCLSV--DYITDAMVGTISQGLVSLTHLDLRDA-PLIEPRITFDLTNSGLQQINQHGKLKHLSL 192 (547)
Q Consensus 128 ~L~~L~l~~--~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l 192 (547)
.|+++.+.. ..+.+.++ .+|.+|+++.+..+ + ..++..+-.++..|.+|+.+.+
T Consensus 65 ~L~sI~iP~svt~Ig~~AF----~~C~~L~~i~~~~n~p-------~~l~~Ig~~aF~~c~~L~~i~~ 121 (394)
T 4gt6_A 65 VLTSVQIPDTVTEIGSNAF----YNCTSLKRVTIQDNKP-------SCVKKIGRQAFMFCSELTDIPI 121 (394)
T ss_dssp CCCEEEECTTCCEECTTTT----TTCTTCCEEEEGGGCC-------CCCCEECTTTTTTCTTCCBCGG
T ss_pred cCEEEEECCCeeEEhHHHh----hCCccCceEeecCCCC-------CeeeEechhhchhcccceeecc
Confidence 466666642 23333322 25677777766543 1 1222233334455566665554
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.86 E-value=1e-06 Score=93.31 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=40.2
Q ss_pred hcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCC
Q 008973 268 ATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVIT 347 (547)
Q Consensus 268 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~ 347 (547)
..++.|+.|+++++ .+...+. .+..+++|++|+|++| .++. ....+..+++|+.|+|++|.++.. ...+.. ++
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~-~~~~l~~L~~L~Ls~N-~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~--l~ 293 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISA-NIFKYDFLTRLYLNGN-SLTE-LPAEIKNLSNLRVLDLSHNRLTSL-PAELGS--CF 293 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCG-GGGGCCSCSCCBCTTS-CCSC-CCGGGGGGTTCCEEECTTSCCSSC-CSSGGG--GT
T ss_pred ccCCCCcEEECCCC-CCCCCCh-hhcCCCCCCEEEeeCC-cCcc-cChhhhCCCCCCEEeCcCCcCCcc-ChhhcC--CC
Confidence 34456666666663 2222111 1225566666666665 4442 123345566666666666655421 112222 55
Q ss_pred CccEEEeCCC
Q 008973 348 SLVKLSLRGC 357 (547)
Q Consensus 348 ~L~~L~l~~~ 357 (547)
+|+.|+|+++
T Consensus 294 ~L~~L~L~~N 303 (727)
T 4b8c_D 294 QLKYFYFFDN 303 (727)
T ss_dssp TCSEEECCSS
T ss_pred CCCEEECCCC
Confidence 5666666554
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.79 E-value=7.1e-06 Score=80.34 Aligned_cols=127 Identities=16% Similarity=0.222 Sum_probs=73.6
Q ss_pred HHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCC
Q 008973 241 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSL 320 (547)
Q Consensus 241 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 320 (547)
+.+|..|+.+.+... +...+ ...+..++.|+.+.+.. .+...+-.++..|.+|+.+.|.. .++..+-.+|.+|
T Consensus 261 F~~c~~L~~i~lp~~--~~~I~-~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C 333 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS--VVSIG-TGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGC 333 (394)
T ss_dssp TTTCSSCCEEECCTT--CCEEC-TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTC
T ss_pred eeecccccEEecccc--cceec-CcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCC
Confidence 456788888887642 11111 11234567888888865 33444445677889999999875 4665566678889
Q ss_pred CCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCCccEEecCC
Q 008973 321 PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSN 384 (547)
Q Consensus 321 ~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 384 (547)
.+|+.+.+..+ ++..+-.++. .|++|+.+++.+.. ..+.. ...| ..|+.+.+..
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~--~C~~L~~i~~~~~~----~~~~~-~~~~--~~L~~i~i~~ 387 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFS--NCTALNNIEYSGSR----SQWNA-ISTD--SGLQNLPVAP 387 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGT--TCTTCCEEEESSCH----HHHHT-CBCC--CCC-------
T ss_pred CCCCEEEECcc-cCEEhHhHhh--CCCCCCEEEECCce----eehhh-hhcc--CCCCEEEeCC
Confidence 99999998664 3222223333 48889999887631 12222 2234 6788887765
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.75 E-value=1e-05 Score=68.74 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=15.5
Q ss_pred cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccC
Q 008973 294 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 333 (547)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l 333 (547)
.+++|++|++++| .+.......+..+++|++|++++|.+
T Consensus 52 ~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 52 RLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCcc
Confidence 3444444444443 33332222333444444444444433
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.74 E-value=1.1e-05 Score=68.86 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=15.0
Q ss_pred cCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccC
Q 008973 294 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 333 (547)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l 333 (547)
.+++|+.|++++| .+.......+..+++|+.|++++|.+
T Consensus 55 ~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 55 HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCcc
Confidence 3344444444443 33332222233344444444444433
No 154
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.66 E-value=5.9e-06 Score=87.41 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=68.3
Q ss_pred HhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeCCCCCCcH--HHHHHH
Q 008973 291 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD--KCISAL 368 (547)
Q Consensus 291 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~--~~~~~l 368 (547)
.+..+++|+.|+|++| .+.... ..+..+++|++|+|++|.++... ..+.. +++|+.|+|+++. ++. ..+..
T Consensus 219 ~~~~l~~L~~L~Ls~n-~l~~l~-~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~--l~~L~~L~Ls~N~-l~~lp~~~~~- 291 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNL-QIFNIS-ANIFKYDFLTRLYLNGNSLTELP-AEIKN--LSNLRVLDLSHNR-LTSLPAELGS- 291 (727)
T ss_dssp ---CCCCCCEEECTTS-CCSCCC-GGGGGCCSCSCCBCTTSCCSCCC-GGGGG--GTTCCEEECTTSC-CSSCCSSGGG-
T ss_pred hhccCCCCcEEECCCC-CCCCCC-hhhcCCCCCCEEEeeCCcCcccC-hhhhC--CCCCCEEeCcCCc-CCccChhhcC-
Confidence 3457788888888887 454322 23347888888888888776322 23433 7888888888864 441 11222
Q ss_pred hccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHH
Q 008973 369 FDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS 418 (547)
Q Consensus 369 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 418 (547)
+++|++|+|+++ .++.... . ...+++|+.|+|++| .++...
T Consensus 292 -----l~~L~~L~L~~N-~l~~lp~-~-~~~l~~L~~L~L~~N-~l~~~~ 332 (727)
T 4b8c_D 292 -----CFQLKYFYFFDN-MVTTLPW-E-FGNLCNLQFLGVEGN-PLEKQF 332 (727)
T ss_dssp -----GTTCSEEECCSS-CCCCCCS-S-TTSCTTCCCEECTTS-CCCSHH
T ss_pred -----CCCCCEEECCCC-CCCccCh-h-hhcCCCccEEeCCCC-ccCCCC
Confidence 278888888884 5541111 1 225778888888888 455443
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.41 E-value=4.4e-05 Score=64.96 Aligned_cols=64 Identities=22% Similarity=0.206 Sum_probs=42.7
Q ss_pred cCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCC
Q 008973 269 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 334 (547)
Q Consensus 269 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 334 (547)
.+++|+.|++++ +.+.......+..+++|+.|++++| .+.......+..+++|+.|++++|.+.
T Consensus 55 ~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 55 HLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 345566666655 3444333333457888999999887 666554455778899999999998665
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.41 E-value=4.4e-05 Score=64.67 Aligned_cols=64 Identities=23% Similarity=0.148 Sum_probs=44.8
Q ss_pred cCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCC
Q 008973 269 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 334 (547)
Q Consensus 269 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 334 (547)
.+++|+.|++++ +.+.......+..+++|++|++++| .+.......+..+++|+.|++++|.+.
T Consensus 52 ~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 52 RLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 345666666666 3444333334567889999999888 676655556778899999999998665
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.30 E-value=6.8e-05 Score=71.91 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=32.6
Q ss_pred CCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccCC
Q 008973 271 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 334 (547)
Q Consensus 271 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 334 (547)
++|+.|+|++.+.+.......+..+++|+.|+|++| .+.......|..+++|+.|+|++|.++
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 345555555323443333333445566666666655 455444444555666666666665554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.02 E-value=0.0015 Score=59.18 Aligned_cols=83 Identities=27% Similarity=0.330 Sum_probs=45.0
Q ss_pred hcCCCccEEEccCCCCCCHH-HH-HHhhcCCCCCEEeCCCCCCCChH-HHHhhhCCCCccEEEecCccCCh-----HhH-
Q 008973 268 ATSLSLTHVCLRWCNLLTNH-AI-KSLASNTGIKVLDLRDCKNLGDE-ALRAISSLPQLKILLLDGSDISD-----VGV- 338 (547)
Q Consensus 268 ~~~~~L~~L~l~~~~~l~~~-~~-~~l~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~l~~-----~~l- 338 (547)
..+++|+.|++++ +.+... ++ ..+..+++|+.|+|++| .+... .+..+..+ +|+.|++++|.+.. ...
T Consensus 167 ~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence 3556666666666 344331 11 12335777777777776 45543 33333344 77777777776653 111
Q ss_pred HHHHHhcCCCccEEEe
Q 008973 339 SYLRLTVITSLVKLSL 354 (547)
Q Consensus 339 ~~l~~~~~~~L~~L~l 354 (547)
..+.. .+|+|+.|+-
T Consensus 244 ~~il~-~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRE-RFPKLLRLDG 258 (267)
T ss_dssp HHHHH-HCTTCCEESS
T ss_pred HHHHH-HCcccCeECC
Confidence 12222 4777777753
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.91 E-value=0.00031 Score=67.24 Aligned_cols=100 Identities=23% Similarity=0.216 Sum_probs=66.2
Q ss_pred EEEccCCCCCCHHHHHHhhcCCCCCEEeCCC-CCCCChHHHHhhhCCCCccEEEecCccCChHhHHHHHHhcCCCccEEE
Q 008973 275 HVCLRWCNLLTNHAIKSLASNTGIKVLDLRD-CKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLS 353 (547)
Q Consensus 275 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~-~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~ 353 (547)
.++.++.+.+...+. +..+++|+.|+|++ + .+.......|..+++|+.|+|++|.++......+.. +++|+.|+
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF--TPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS--CSCCCEEE
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcC--CcCCCEEe
Confidence 455655324554333 66788999999986 6 777766677889999999999999887655444444 88899999
Q ss_pred eCCCCCCcHHHHHHHhccCCCCCccEEecCC
Q 008973 354 LRGCKRLTDKCISALFDGTSKLQLQELDLSN 384 (547)
Q Consensus 354 l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 384 (547)
|+++. ++..... .... ..|+.|++.+
T Consensus 87 l~~N~-l~~~~~~-~~~~---~~L~~l~l~~ 112 (347)
T 2ifg_A 87 LSFNA-LESLSWK-TVQG---LSLQELVLSG 112 (347)
T ss_dssp CCSSC-CSCCCST-TTCS---CCCCEEECCS
T ss_pred CCCCc-cceeCHH-Hccc---CCceEEEeeC
Confidence 98854 4311000 1111 2377777777
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.42 E-value=0.0047 Score=55.86 Aligned_cols=10 Identities=20% Similarity=0.063 Sum_probs=6.1
Q ss_pred CCCEEeCCCC
Q 008973 297 GIKVLDLRDC 306 (547)
Q Consensus 297 ~L~~L~l~~~ 306 (547)
+|+.|++.+|
T Consensus 221 ~L~~L~L~~N 230 (267)
T 3rw6_A 221 KLEELWLDGN 230 (267)
T ss_dssp CCSEEECTTS
T ss_pred CcceEEccCC
Confidence 5666666655
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.84 E-value=0.012 Score=56.79 Aligned_cols=106 Identities=8% Similarity=0.071 Sum_probs=55.1
Q ss_pred HcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCC
Q 008973 242 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP 321 (547)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 321 (547)
..+..|+.+.+... ++..+- ..+..+.+|+.+.+.. .+...+..++..|++|+.+.+.++ .+...+-.+|.+|.
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~-~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGS-FLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCV 310 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECT-TTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCT
T ss_pred cCCccceEEEcCCC--ccEeCc-cccceeehhccccccc--cceecccccccccccccccccccc-ccceehhhhhcCCC
Confidence 34666666666532 221111 1223455666666654 233333344556777777777654 45544555666777
Q ss_pred CccEEEecCccCChHhHHHHHHhcCCCccEEEeCC
Q 008973 322 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 356 (547)
Q Consensus 322 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~ 356 (547)
+|+.+.+..+ ++..+-.++. .|.+|+.+.+..
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~--~C~~L~~i~ip~ 342 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFK--NCKALSTISYPK 342 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTT--TCTTCCCCCCCT
T ss_pred CCCEEEcCcc-ccEEHHHHhh--CCCCCCEEEECC
Confidence 7777777543 2222222222 366777766643
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.81 E-value=0.01 Score=57.31 Aligned_cols=131 Identities=12% Similarity=0.173 Sum_probs=79.2
Q ss_pred hhccCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCC-CCCCHHHHHHHHHcCCCCcEEEecCCCCC
Q 008973 180 QINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGF-CRVTDTGFKTILHSCSNLYKLRVSHGTQL 258 (547)
Q Consensus 180 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 258 (547)
.+..+..|+.+.+.. ....+....+ ..|.+|+.+.+... ..+... .+.++.+|+.+.+.. .+
T Consensus 212 ~f~~~~~l~~i~~~~-------~~~~i~~~~f----~~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~--~i 274 (379)
T 4h09_A 212 GFSYGKNLKKITITS-------GVTTLGDGAF----YGMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYA--KV 274 (379)
T ss_dssp TTTTCSSCSEEECCT-------TCCEECTTTT----TTCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECC--CC
T ss_pred ccccccccceeeecc-------ceeEEccccc----cCCccceEEEcCCCccEeCcc----ccceeehhccccccc--cc
Confidence 344667777777732 2223332222 34778888887542 112222 245578888888764 22
Q ss_pred CHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCc
Q 008973 259 TDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 331 (547)
Q Consensus 259 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 331 (547)
+..+. ..+..|.+|+.+.+.+ ..+...+-.++..|.+|+.+.|.. .+...+-.+|.+|.+|+.+.+..+
T Consensus 275 ~~i~~-~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 275 KTVPY-LLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp SEECT-TTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred eeccc-cccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 22111 1344677888888876 334444445677888999999875 466666677888888988888654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=78.94 E-value=1.2 Score=35.02 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=24.9
Q ss_pred CCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecCccC
Q 008973 296 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 333 (547)
Q Consensus 296 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l 333 (547)
++|+.|+|++| .++......|..+++|+.|+|.+|.+
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 36777777776 56655555666777777777777643
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=75.76 E-value=0.91 Score=35.67 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=22.4
Q ss_pred CCccEEecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC
Q 008973 435 SSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 473 (547)
Q Consensus 435 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 473 (547)
++|+.|+|++|. |+......|.. +++|+.|.+.+|+
T Consensus 31 ~~l~~L~Ls~N~-l~~l~~~~f~~--l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNN-LTALPPGLLDA--LPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSC-CSSCCTTTGGG--CTTCCEEECCSSC
T ss_pred cCCCEEECCCCc-CCccChhhhhh--ccccCEEEecCCC
Confidence 357777777765 55544444443 6677777777775
No 165
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=68.55 E-value=1.3 Score=37.90 Aligned_cols=18 Identities=33% Similarity=0.708 Sum_probs=12.4
Q ss_pred hhHHHHHHHhhCCCCCCC
Q 008973 515 EVDELEQWLMEGEDESDN 532 (547)
Q Consensus 515 ~~~~l~~~~~~~~~~~~~ 532 (547)
....+-.|+.+.++|+|+
T Consensus 143 ~~~pFI~WL~EAEEEs~e 160 (208)
T 2iu1_A 143 KAEPFIKWLKEAEEESSG 160 (208)
T ss_dssp HHHHHHHHHHCSSCCCCC
T ss_pred HHHHHHHHHHcccccccc
Confidence 345677788888876644
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.08 E-value=5.8 Score=29.25 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=26.9
Q ss_pred HHhhcCCCCCEEeCCCCCCCChHHHHhhhCCCCccEEEecC
Q 008973 290 KSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDG 330 (547)
Q Consensus 290 ~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~ 330 (547)
.+|..|.+|+.+.|.. .++..+-.+|..|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 3556777787777765 35555566677777777777766
No 167
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=47.94 E-value=5.4 Score=35.81 Aligned_cols=13 Identities=15% Similarity=0.118 Sum_probs=7.8
Q ss_pred ccchhhHHHHHHH
Q 008973 511 HDYDEVDELEQWL 523 (547)
Q Consensus 511 ~~~~~~~~l~~~~ 523 (547)
+..+.++.++..+
T Consensus 247 iT~~Al~~Lee~l 259 (293)
T 3bbo_G 247 FTEGTIQYLNQRY 259 (293)
T ss_dssp CCTTHHHHHHHHS
T ss_pred EEHHHHHHHHHHh
Confidence 4456666666654
No 168
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=36.34 E-value=13 Score=30.80 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=8.8
Q ss_pred hHHHHHHHhhCCCCCC
Q 008973 516 VDELEQWLMEGEDESD 531 (547)
Q Consensus 516 ~~~l~~~~~~~~~~~~ 531 (547)
...+-.|+.+.++|+|
T Consensus 150 ~~pFI~WL~eAEEEse 165 (177)
T 2ful_A 150 AKPFITWLETAESDDD 165 (177)
T ss_dssp THHHHHHHHHCC----
T ss_pred HHHHHHHHHccccccc
Confidence 4567778888776553
No 169
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=22.75 E-value=18 Score=29.59 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=0.0
Q ss_pred CCCCCCCh
Q 008973 526 GEDESDND 533 (547)
Q Consensus 526 ~~~~~~~~ 533 (547)
++++++++
T Consensus 144 PDp~d~d~ 151 (171)
T 1zyi_A 144 PDPEDEDS 151 (171)
T ss_dssp --------
T ss_pred CCcccccc
Confidence 55544333
No 170
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=22.55 E-value=34 Score=28.55 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=9.1
Q ss_pred hhHHHHHHHhhCCCCCCC
Q 008973 515 EVDELEQWLMEGEDESDN 532 (547)
Q Consensus 515 ~~~~l~~~~~~~~~~~~~ 532 (547)
....+-.|+.+.++|+|+
T Consensus 169 ~~~~Fi~WL~eAEeEs~~ 186 (189)
T 1paq_A 169 LTVKWVEWLQNADEESSS 186 (189)
T ss_dssp HHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHhccCccccc
Confidence 345677788887766533
No 171
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=21.44 E-value=18 Score=32.27 Aligned_cols=16 Identities=13% Similarity=0.138 Sum_probs=7.7
Q ss_pred eeeccchhhHHHHHHH
Q 008973 508 MYMHDYDEVDELEQWL 523 (547)
Q Consensus 508 ~~~~~~~~~~~l~~~~ 523 (547)
+.....+++..+-+.+
T Consensus 225 ~~~l~~~ei~~~~~~~ 240 (264)
T 3h4p_A 225 FKKIPVEEIKKLIEKV 240 (264)
T ss_dssp EEECCTTTTGGGTTTT
T ss_pred EEECCHHHHHHHHHHH
Confidence 3345566555444333
Done!