BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008977
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 118/273 (43%), Gaps = 41/273 (15%)
Query: 84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS 143
+PLH+A+ G IVK L LQRG ++N + TPLH A R
Sbjct: 16 TPLHVASFMGHLPIVKNL----------LQRGASP------NVSNVKVETPLHMAARAGH 59
Query: 144 VDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALH 203
+VAK L+ V A ++++TPL+ AA G +V +L+ +P G T LH
Sbjct: 60 TEVAKYLLQNKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH 118
Query: 204 AAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFI 263
A E + L EK + A K G+TPLH AA G+ ++LLL+ D
Sbjct: 119 IAAREGHVETVLALL---EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175
Query: 264 GGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAM------VSLDLL 317
G +T LH+A ++ +V ++L G G+ LH A V+ LL
Sbjct: 176 G--KNGLTPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232
Query: 318 QSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
Q G AE V G TPLH+ A
Sbjct: 233 QYGGSA------------NAESVQGVTPLHLAA 253
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 41/301 (13%)
Query: 71 SPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKK---QPRDLQRGVKSAERQMLGMT 127
SP+V ++ K ++PLH+AA+ G + K+L++ K + +D Q + A R +G T
Sbjct: 39 SPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR--IGHT 93
Query: 128 NE-----EQN-----------TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYM 171
N E N TPLH A R V+ L+ + + TPL++
Sbjct: 94 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA-SQACMTKKGFTPLHV 152
Query: 172 AAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRD 231
AA G V + +L++ P G +G T LH AV+ +++K L R +
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL----PRGGSPHSP 208
Query: 232 KY-GWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS 290
+ G+TPLH AA + ++ LL + SA + +T LHLAA GH +V +LS
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSAN--AESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 291 -SCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVV 349
+G ++ G LH + Q + + +++ ++ A G TPLHV
Sbjct: 267 KQANGNLG--NKSGLTPLHL------VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318
Query: 350 A 350
+
Sbjct: 319 S 319
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 129/326 (39%), Gaps = 64/326 (19%)
Query: 2 DRKLFEAAAKGDIEPFREIARDELESIVTDLM-NNTVLYGNITASHLTLQTEEGEIVSVS 60
++ A AK D P AR ++V L+ NN TA H L ++
Sbjct: 69 NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH------IAAR 122
Query: 61 TKFVEHILDLSPSVLFQA--DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKS 118
VE +L L QA KG +PLH+AAK G + + L++ RD +
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE------RDAHP--NA 174
Query: 119 AERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANG 176
A + L TPLH AV ++D+ K+L+ PH P N TPL++AA
Sbjct: 175 AGKNGL--------TPLHVAVHHNNLDIVKLLLPRGGSPHSPA---WNGYTPLHIAAKQN 223
Query: 177 SVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHE------EKRSLTAVR 230
VE+ +LQ S E G T LH A E++ L + K LT +
Sbjct: 224 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283
Query: 231 ------------------------DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGK 266
+ G+TPLH A++ G K LL H A + K
Sbjct: 284 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ---ADVNAK 340
Query: 267 DR-NMTALHLAAASGHIMVVDRILSS 291
+ + LH AA GH +V +L +
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKN 366
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 33/164 (20%)
Query: 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
+ G +PLHL A++G + LIK GV M+ T TPLH
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIK----------HGV------MVDATTRMGYTPLHV 317
Query: 138 AVRLRSVDVAKILIVADPHVPYSANRNNET-----PLYMAAANGSVEIVAKILQKCPSPA 192
A ++ + K L+ + A+ N +T PL+ AA G +IV +L+ SP
Sbjct: 318 ASHYGNIKLVKFLL------QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371
Query: 193 HEGPDGKTALHAAV---YTYPTEVIKQLFLHEEKRSLTAVRDKY 233
DG T L A Y T+V+K + ++ S V DK+
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVLKVV---TDETSFVLVSDKH 412
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEK 223
N TPL++AA NG +E+V +L+ + +G+T LH A EV+K L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL---EA 57
Query: 224 RSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHI 282
+ +DK G TPLH AA +G KLLL+ + A + KD+N T LHLAA +GH+
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAARNGHL 114
Query: 283 MVVDRILSS 291
VV +L +
Sbjct: 115 EVVKLLLEA 123
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
TPLH A R ++V K+L+ A V + ++N TPL++AA NG +E+V +L+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
+ +G+T LH A EV+K L E + +DK G TPLH AA +G KL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 253 LLD 255
LL+
Sbjct: 120 LLE 122
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
G +PLHLAA+ G +VK L++ + ++ TPLH A R
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLAARN 45
Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTA 201
++V K+L+ A V + ++N TPL++AA NG +E+V +L+ + +G+T
Sbjct: 46 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 202 LHAAVYTYPTEVIKQLF 218
LH A EV+K L
Sbjct: 105 LHLAARNGHLEVVKLLL 121
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 21/123 (17%)
Query: 234 GWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSC 292
G TPLH AA +G KLLL+ + A + KD+N T LHLAA +GH+ VV +L +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 293 DGCCAKVDERGWNFLHFAMVS-----LDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLH 347
AK D+ G LH A + + LL +G + A+D NG TPLH
Sbjct: 59 ADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----------AKDKNGRTPLH 106
Query: 348 VVA 350
+ A
Sbjct: 107 LAA 109
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 17/108 (15%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAA+ G +VK L++ + ++ TPLH A
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLA 75
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQ 186
R ++V K+L+ A V + ++N TPL++AA NG +E+V +L+
Sbjct: 76 ARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAA+ G +VK L++ + ++ TPLH A
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLA 108
Query: 139 VRLRSVDVAKILIVA 153
R ++V K+L+ A
Sbjct: 109 ARNGHLEVVKLLLEA 123
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 27/222 (12%)
Query: 77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
+AD GD+PLH+A +G+ V L+ ++ R+L + N + TPLH
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD------------IYNNLRQTPLH 51
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH--- 193
AV V ++L+ A P + +R+ +T ++A + S + +L +P
Sbjct: 52 LAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSA-APGTLDL 109
Query: 194 --EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
DG TALH AV T E ++ L E + AV K G +PL HA + +
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLL--ERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 252 LLLDH--DKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS 291
LLL H + +A G +ALH A+ G + +V ++ S
Sbjct: 168 LLLQHGANVNAQMYSGS----SALHSASGRGLLPLVRTLVRS 205
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQL 217
P +++ + TPL+ AA NG EIV +L K P + DG+T LH A E++K L
Sbjct: 30 PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 89
Query: 218 FLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
K + +D G TPLH+AA +G + KLLL
Sbjct: 90 L---SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
+D+ G +PLH AA+ G IVK L L +G + + + TPLH
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLL----------LSKGADPNAK------DSDGRTPLHY 76
Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
A ++ K+L+ ADP+ S R TPL+ AA NG EIV +L K P
Sbjct: 77 AAENGHKEIVKLLLSKGADPNAKDSDGR---TPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Query: 196 PDGKTALHAAVYTYPTEVIKQL 217
DG+T L A E++K L
Sbjct: 134 SDGRTPLDLAREHGNEEIVKLL 155
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 169 LYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTA 228
L AA NG+ + V +L+ P DG+T LH A E++K L K +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLL---SKGADPN 64
Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDR 287
+D G TPLH+AA +G + KLLL A KD + T LH AA +GH +V
Sbjct: 65 AKDSDGRTPLHYAAENGHKEIVKLLL---SKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 288 ILS 290
+LS
Sbjct: 122 LLS 124
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 44/121 (36%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRIL 289
D G TPLH+AA +G + KLLL A KD + T LH AA +GH +V +L
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLL---SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 90
Query: 290 SSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVV 349
S +G + P A+D +G TPLH
Sbjct: 91 S-----------KGAD---------------------PN--------AKDSDGRTPLHYA 110
Query: 350 A 350
A
Sbjct: 111 A 111
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA D +IL+ V + + N TPL++AAANG +EIV +L+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
G T LH A Y E+++ L H + D+ GWTPLH AA SG+ ++LL
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVN---AYDRAGWTPLHLAALSGQLEIVEVLL 125
Query: 255 DH 256
H
Sbjct: 126 KH 127
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 41/190 (21%)
Query: 1 MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
+ +KL EAAA G + R + + + TD +T HL + EIV V
Sbjct: 6 LGKKLLEAAAAGQDDEVRILMANGADVNATD-------DNGLTPLHLAAANGQLEIVEV- 57
Query: 61 TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
+++ D++ S D+ G +PLHLAA G IV+ L+K V + +
Sbjct: 58 --LLKNGADVNAS-----DSAGITPLHLAAYDGHLEIVEVLLKHGAD--------VNAYD 102
Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSV-- 178
R TPLH A +++ ++L+ + A+ N + L + A + S+
Sbjct: 103 RAGW--------TPLHLAALSGQLEIVEVLL------KHGADVNAQDALGLTAFDISINQ 148
Query: 179 --EIVAKILQ 186
E +A+ILQ
Sbjct: 149 GQEDLAEILQ 158
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCC 296
L AA +G++ ++L+ + A + D N +T LHLAAA+G + +V+ +L +
Sbjct: 10 LLEAAAAGQDDEVRILM---ANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Query: 297 AKVDERGWNFLHFAMVS--LDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR 354
A D G LH A L++++ +++KH N A D G TPLH+ A +
Sbjct: 67 AS-DSAGITPLHLAAYDGHLEIVE---VLLKHGADVN-----AYDRAGWTPLHLAALSGQ 117
Query: 355 L 355
L
Sbjct: 118 L 118
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 127 TNEEQNTPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKI 184
++ + TPLH A +V K+L+ ADP+ S + +TPL++AA NG E+V +
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS---DGKTPLHLAAENGHKEVVKLL 89
Query: 185 LQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYS 244
L + P + DGKT LH A EV+K L + + D G TPL A
Sbjct: 90 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL---SQGADPNTSDSDGRTPLDLAREH 146
Query: 245 GRELTSKLL 253
G E KLL
Sbjct: 147 GNEEVVKLL 155
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 21/142 (14%)
Query: 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
+D+ G +PLHLAA+ G +VK L L +G + G TPLH
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLL----------LSQGADPNAKDSDGK------TPLHL 76
Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
A +V K+L+ ADP+ S + +TPL++AA NG E+V +L + P
Sbjct: 77 AAENGHKEVVKLLLSQGADPNAKDS---DGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Query: 196 PDGKTALHAAVYTYPTEVIKQL 217
DG+T L A EV+K L
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLL 155
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
EA + D K L+ V +++ + +TPL++AA NG E+V +L + P +
Sbjct: 10 EAAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
DGKT LH A EV+K L + + +D G TPLH AA +G + KLLL
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLL---SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 257 --DKSAAFIGGKDRNMTALHLAAASGHIMVV 285
D + + G+ T L LA G+ VV
Sbjct: 126 GADPNTSDSDGR----TPLDLAREHGNEEVV 152
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 169 LYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTA 228
L AA NG+ + V +L+ DGKT LH A EV+K L + +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLL---SQGADPN 64
Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDH--DKSAAFIGGKDRNMTALHLAAASGHIMVVD 286
+D G TPLH AA +G + KLLL D +A GK T LHLAA +GH VV
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK----TPLHLAAENGHKEVVK 120
Query: 287 RILS 290
+LS
Sbjct: 121 LLLS 124
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 55/117 (47%), Gaps = 23/117 (19%)
Query: 241 AAYSGRELTSKLLLDH--DKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAK 298
AA +G + K LL++ D +A+ GK T LHLAA +GH VV +LS AK
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGK----TPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 299 VDERGWNFLHFAMVS-----LDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
D G LH A + + LL S G P A+D +G TPLH+ A
Sbjct: 67 -DSDGKTPLHLAAENGHKEVVKLLLSQGA---DPN--------AKDSDGKTPLHLAA 111
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
EA + D K LI V S + + TPL+ AA NG E+V ++ K +
Sbjct: 10 EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
DG+T LH A EV+K L K + +D G TPLHHAA +G + KLL+
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLI---SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-- 123
Query: 257 DKSAAFIGGKDRNMTALHLAAASGHIMVV 285
K A T L LA G+ VV
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEVV 152
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 169 LYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTA 228
L AA NG+ + V +++ DG+T LH A EV+K L K +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI---SKGADVN 64
Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDR 287
+D G TPLHHAA +G + KLL+ A + KD + T LH AA +GH VV
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLLI---SKGADVNAKDSDGRTPLHHAAENGHKEVVKL 121
Query: 288 ILS 290
++S
Sbjct: 122 LIS 124
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
+D+ G +PLH AA+ G +VK LI K A+ + + + TPLH
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLIS-------------KGAD---VNAKDSDGRTPLHH 76
Query: 138 AVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG 195
A +V K+LI AD + S R TPL+ AA NG E+V ++ K
Sbjct: 77 AAENGHKEVVKLLISKGADVNAKDSDGR---TPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 196 PDGKTALHAAVYTYPTEVIKQL 217
DG+T L A EV+K L
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLL 155
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 46/121 (38%), Gaps = 44/121 (36%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRIL 289
D G TPLHHAA +G + KLL+ A + KD + T LH AA +GH VV
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLI---SKGADVNAKDSDGRTPLHHAAENGHKEVVK--- 87
Query: 290 SSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVV 349
LL S G + A+D +G TPLH
Sbjct: 88 --------------------------LLISKGADVN-----------AKDSDGRTPLHHA 110
Query: 350 A 350
A
Sbjct: 111 A 111
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEK 223
N TPL++AA NG +E+V +L+ + +G+T LH A EV+K L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL---EA 57
Query: 224 RSLTAVRDKYGWTPLHHAAYSGRELTSKLLLD 255
+ +DK G TPLH AA +G KLLL+
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
+G+T LH A EV+K L E + +DK G TPLH AA +G KLLL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE- 56
Query: 257 DKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSS 291
+ A + KD+N T LHLAA +GH+ VV +L +
Sbjct: 57 --AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
TPLH A R ++V K+L+ A V + ++N TPL++AA NG +E+V +L+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLF 218
+ +G+T LH A EV+K L
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
G +PLHLAA+ G +VK L++ + ++ TPLH A R
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLAARN 45
Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQ 186
++V K+L+ A V + ++N TPL++AA NG +E+V +L+
Sbjct: 46 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 271 TALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVS-----LDLLQSSGLVIK 325
T LHLAA +GH+ VV +L + AK D+ G LH A + + LL +G +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 326 HPTVRNSRLLIAEDVNGNTPLHVVA 350
A+D NG TPLH+ A
Sbjct: 63 -----------AKDKNGRTPLHLAA 76
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAA+ G +VK L++ + ++ TPLH A
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLA 75
Query: 139 VRLRSVDVAKILIVA 153
R ++V K+L+ A
Sbjct: 76 ARNGHLEVVKLLLEA 90
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 73 SVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN 132
S+ + D + LH A G IV+FL LQ GV ++ G +
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFL----------LQLGVPVNDKDDAGWS----- 75
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
PLH A ++ K L+V HV + N+N TPL+ AA+ EI +L+ +P
Sbjct: 76 -PLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
+ TA+H A +++ L + ++ T ++D G TPLH A R +K
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFY---KASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 253 LL 254
L+
Sbjct: 191 LV 192
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Query: 144 VDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-GKTAL 202
+D K I+AD + ++++ T L+ A + G EIV +LQ P ++ D G + L
Sbjct: 19 LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPL 77
Query: 203 HAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAF 262
H A E++K L + K + ++ G TPLH+AA R + +LL+ A
Sbjct: 78 HIAASAGXDEIVKALLV---KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGAN 131
Query: 263 IGGKDR-NMTALHLAAASGHIMVVDRIL 289
KD + TA+H AAA G++ +V +L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILL 159
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 73 SVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN 132
S+ + D + LH A G IV+FL LQ GV ++ G +
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFL----------LQLGVPVNDKDDAGWS----- 75
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
PLH A ++ K L+V HV + N+N TPL+ AA+ EI +L+ +P
Sbjct: 76 -PLHIAASAGRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
+ TA+H A +++ L + ++ T ++D G TPLH A R +K
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFY---KASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 253 LL 254
L+
Sbjct: 191 LV 192
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Query: 144 VDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-GKTAL 202
+D K I+AD + ++++ T L+ A + G EIV +LQ P ++ D G + L
Sbjct: 19 LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPL 77
Query: 203 HAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAF 262
H A E++K L + K + ++ G TPLH+AA R + +LL+ A
Sbjct: 78 HIAASAGRDEIVKALLV---KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGAN 131
Query: 263 IGGKDR-NMTALHLAAASGHIMVVDRIL 289
KD + TA+H AAA G++ +V +L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILL 159
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 14/171 (8%)
Query: 179 EIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL 238
E+ +IL D +TALH A TE+++ FL + + +D GW+PL
Sbjct: 21 ELKERILADKSLATRTDQDSRTALHWACSAGHTEIVE--FLLQLGVPVND-KDDAGWSPL 77
Query: 239 HHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCA 297
H AA +GR+ K LL A + ++N T LH AA+ + +L A
Sbjct: 78 HIAASAGRDEIVKALL---VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 298 KVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHV 348
K D +H A +L L+ + +D GNTPLH+
Sbjct: 135 K-DHYDATAMHRAAAKGNLKMVHILLFYKASTN------IQDTEGNTPLHL 178
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 65/154 (42%), Gaps = 23/154 (14%)
Query: 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
G SPLH+AA G A ++ L+K G N +Q PLH A +
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANA----------------GARNADQAVPLHLACQQ 129
Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTA 201
V K L+ ++ P + + TPL A + G E+VA +LQ S G TA
Sbjct: 130 GHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Query: 202 LHAAVYTYPTEVIKQLFLHE------EKRSLTAV 229
LH AV V++ L LH KR TAV
Sbjct: 189 LHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 19/204 (9%)
Query: 89 AAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAK 148
A GD +V++L+++ ++ D + V +A+ + H + A+
Sbjct: 18 AVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFC-----------HPLCQCPKCAPAQ 66
Query: 149 ILIVADPHVPYSAN---RNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA 205
+ P N ++ +PL++AA +G +++ +L+ + D LH A
Sbjct: 67 KRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLA 126
Query: 206 VYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGG 265
+V+K L + + +D G TPL +A G LLL H A+
Sbjct: 127 CQQGHFQVVKCLL---DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH--GASINAS 181
Query: 266 KDRNMTALHLAAASGHIMVVDRIL 289
++ TALH A H+ VV+ +L
Sbjct: 182 NNKGNTALHEAVIEKHVFVVELLL 205
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTA-LHLAAASGHIMVVDR 287
V + G +PLH AA GR LLL H +A G ++ + LHLA GH VV
Sbjct: 81 VTSQDGSSPLHVAALHGRADLIPLLLKHGANA---GARNADQAVPLHLACQQGHFQVVKC 137
Query: 288 ILSS 291
+L S
Sbjct: 138 LLDS 141
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
+D+ G +PLH AAK+G IVK LI K A+ + + + TPLH
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLIS-------------KGAD---VNAKDSDGRTPLHY 76
Query: 138 AVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD 197
A + ++ K+LI V + + + TPL+ AA G EIV ++ K D
Sbjct: 77 AAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSD 135
Query: 198 GKTALHAAVYTYPTEVIKQL 217
G+T L A E++K L
Sbjct: 136 GRTPLDLAREHGNEEIVKLL 155
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 169 LYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTA 228
L AA NG+ + V +++ DG+T LH A E++K L K +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLI---SKGADVN 64
Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDR 287
+D G TPLH+AA G + KLL+ A + KD + T LH AA GH +V
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLI---SKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 288 ILS 290
++S
Sbjct: 122 LIS 124
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFL 219
+++ + TPL+ AA G EIV ++ K + DG+T LH A E++K L
Sbjct: 32 ASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI- 90
Query: 220 HEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAAS 279
K + +D G TPLH+AA G + KLL+ K A T L LA
Sbjct: 91 --SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI--SKGADVNTSDSDGRTPLDLAREH 146
Query: 280 GHIMVV 285
G+ +V
Sbjct: 147 GNEEIV 152
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 44/121 (36%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRIL 289
D G TPLH+AA G + KLL+ A + KD + T LH AA GH +V
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLI---SKGADVNAKDSDGRTPLHYAAKEGHKEIVK--- 87
Query: 290 SSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVV 349
LL S G + A+D +G TPLH
Sbjct: 88 --------------------------LLISKGADVN-----------AKDSDGRTPLHYA 110
Query: 350 A 350
A
Sbjct: 111 A 111
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 8/148 (5%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA R D +IL+ V + +++ TPL++AA G +EIV +L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
DG T LH A E+++ L + + +DK G+TPLH AA G ++LL
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 255 DHDKSAAFIGGKDR-NMTALHLAAASGH 281
K+ A + +D+ T LA GH
Sbjct: 122 ---KAGADVNAQDKFGKTPFDLAIREGH 146
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAA++G IV+ L+K + +++ TPLH A
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGAD----------------VNAKDKDGYTPLHLA 75
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG 198
R +++ ++L+ A V + +++ TPL++AA G +EIV +L+ + G
Sbjct: 76 AREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 134
Query: 199 KTALHAAV 206
KT A+
Sbjct: 135 KTPFDLAI 142
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 241 AAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKV 299
AA +G++ ++L+ + A + KD++ T LHLAA GH+ +V+ +L + AK
Sbjct: 9 AARAGQDDEVRILM---ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK- 64
Query: 300 DERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
D+ G+ LH A + L I ++ + A+D +G TPLH+ A
Sbjct: 65 DKDGYTPLHLAA------REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 48/226 (21%)
Query: 58 SVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVK 117
S T+ V +L+ + + A+ G + LH A + +VKFL++
Sbjct: 50 SGDTEEVLRLLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVENGAN---------- 98
Query: 118 SAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYM------ 171
+ + E PLH A +D+A+ LI HV + N +TPL +
Sbjct: 99 ------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAM 151
Query: 172 ----------------AAANGSVEIVAKILQKCPSPAH-----EGPDGKTALHAAVYTYP 210
AA I+ + ++ + H G TALH A
Sbjct: 152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211
Query: 211 TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
TEV+K L + R ++D GWTPLH AA+ G+E ++L+++
Sbjct: 212 TEVLKLLI---QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 172 AAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRD 231
A ++G E V ++L++ + DG TALH A +++K FL E ++ D
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVK--FLVENGANINQP-D 103
Query: 232 KYGWTPLHHAAYSG 245
GW PLH AA G
Sbjct: 104 NEGWIPLHAAASCG 117
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 33/188 (17%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
T LH+A +VD+ K L+ ++ N PL+ AA+ G ++I ++ +
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQPDNEG-WIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 193 HEGPDGKTALH-----AAVYTYPTEVIKQ-----LFLHEEKRSLTAVRDKYGWTPLHHAA 242
+G T L A EV +Q EE+R + +RD W H
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM--LRDARQWLNSGHI- 190
Query: 243 YSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDER 302
+D A GG TALH+AAA G+ V+ ++ + K D
Sbjct: 191 -------------NDVRHAKSGG-----TALHVAAAKGYTEVLKLLIQARYDVNIK-DYD 231
Query: 303 GWNFLHFA 310
GW LH A
Sbjct: 232 GWTPLHAA 239
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 6/169 (3%)
Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
M ++ + +PLH A VD+ +L+ A ++ + + + TPL AA N +E V ++
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 186 QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSG 245
+ + +G T LH A EV++ +L + +D GWTP+ A
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQ--YLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 246 RELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS-CD 293
KLLL S I + N+ LH AA SG + + + +L++ CD
Sbjct: 123 HVDLVKLLLS-KGSDINIRDNEENI-CLHWAAFSGCVDIAEILLAAKCD 169
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 19/145 (13%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRG-----VKSAERQM---------- 123
DA+G + LHLAAKKG +V++L+ + G + + E +
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 124 ---LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
+ + + E+N LH A VD+A+IL+ A + ++ N + ++PL++AA +
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDC 192
Query: 181 VAKILQKCPSPAHEGPDGKTALHAA 205
V L + + +G+T L A
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 23/173 (13%)
Query: 84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS 143
SPLH AA+ G I L+ Q G + +E+Q TPL EA
Sbjct: 13 SPLHAAAEAGHVDICHMLV----------QAGAN------IDTCSEDQRTPLMEAAENNH 56
Query: 144 VDVAKILIVADPHV-PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGK-TA 201
++ K LI A V P A T L++AA G E+V +L + DG T
Sbjct: 57 LEAVKYLIKAGALVDPKDA--EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114
Query: 202 LHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
+ A +++K L K S +RD LH AA+SG +++LL
Sbjct: 115 MIWATEYKHVDLVKLLL---SKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 31/143 (21%)
Query: 236 TPLHHAAYSGRELTSKLLLDHDKSAAFIGGKD-RNMTALHLAAASGHIMVVDRILSSCDG 294
TPL AA + K L+ K+ A + KD T LHLAA GH VV +LS+
Sbjct: 46 TPLMEAAENNHLEAVKYLI---KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102
Query: 295 CCAKVDERGW-------NFLHFAMVSLDLLQSSGLVIK--------HPTVRNSRLLIAE- 338
D+ GW + H +V L L + S + I+ H + + IAE
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Query: 339 -----------DVNGNTPLHVVA 350
+++G++PLH+ A
Sbjct: 163 LLAAKCDLHAVNIHGDSPLHIAA 185
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 8/148 (5%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA R D +IL+ V + +++ TPL++AA G +EIV +L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
DG T LH A E+++ L + + +DK G+TPLH AA G ++LL
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 255 DHDKSAAFIGGKDR-NMTALHLAAASGH 281
K+ A + +D+ TA ++ +G+
Sbjct: 134 ---KAGADVNAQDKFGKTAFDISIDNGN 158
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 17/128 (13%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAA++G IV+ L+K + +++ TPLH A
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGAD----------------VNAKDKDGYTPLHLA 87
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG 198
R +++ ++L+ A V + +++ TPL++AA G +EIV +L+ + G
Sbjct: 88 AREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 146
Query: 199 KTALHAAV 206
KTA ++
Sbjct: 147 KTAFDISI 154
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Query: 238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCC 296
L AA +G++ ++L+ + A + KD++ T LHLAA GH+ +V+ +L +
Sbjct: 18 LLEAARAGQDDEVRILM---ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 297 AKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
AK D+ G+ LH A + L I ++ + A+D +G TPLH+ A
Sbjct: 75 AK-DKDGYTPLHLAA------REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 121
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 8/148 (5%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA R D +IL+ V + +++ TPL++AA G +EIV +L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
DG T LH A E+++ L + + +DK G+TPLH AA G ++LL
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 255 DHDKSAAFIGGKDR-NMTALHLAAASGH 281
K+ A + +D+ T LA +G+
Sbjct: 122 ---KAGADVNAQDKFGKTPFDLAIDNGN 146
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
DG T LH A E+++ L + + +DK G+TPLH AA G ++LL
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-- 88
Query: 257 DKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSS 291
K+ A + KD++ T LHLAA GH+ +V+ +L +
Sbjct: 89 -KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAA++G IV+ L+K + +++ TPLH A
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGAD----------------VNAKDKDGYTPLHLA 75
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG 198
R +++ ++L+ A V + +++ TPL++AA G +EIV +L+ + G
Sbjct: 76 AREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 134
Query: 199 KTALHAAV 206
KT A+
Sbjct: 135 KTPFDLAI 142
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 241 AAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKV 299
AA +G++ ++L+ + A + KD++ T LHLAA GH+ +V+ +L + AK
Sbjct: 9 AARAGQDDEVRILM---ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK- 64
Query: 300 DERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
D+ G+ LH A + L I ++ + A+D +G TPLH+ A
Sbjct: 65 DKDGYTPLHLAA------REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 20/187 (10%)
Query: 73 SVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN 132
S+ + D + LH A G IV+FL LQ GV ++ G +
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFL----------LQLGVPVNDKDDAGWS----- 75
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
PLH A ++ K L+ V + N+N TPL+ AA+ EI +L+ +P
Sbjct: 76 -PLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
+ TA+H A ++I L + ++ T ++D G TPLH A R +KL
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYY---KASTNIQDTEGNTPLHLACDEERVEEAKL 190
Query: 253 LLDHDKS 259
L+ S
Sbjct: 191 LVSQGAS 197
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 151 IVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-GKTALHAAVYTY 209
I+AD + ++++ T L+ A + G EIV +LQ P ++ D G + LH A
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAG 84
Query: 210 PTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR- 268
E++K L K + ++ G TPLH+AA R + +LL+ A KD
Sbjct: 85 RDEIVKALL---GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGANPDAKDHY 138
Query: 269 NMTALHLAAASGHIMVVDRIL 289
TA+H AAA G++ ++ +L
Sbjct: 139 EATAMHRAAAKGNLKMIHILL 159
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 14/153 (9%)
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
D +TALH A TE+++ FL + + +D GW+PLH AA +GR+ K LL
Sbjct: 39 DSRTALHWACSAGHTEIVE--FLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALL-- 93
Query: 257 DKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDL 316
K A T LH AA+ + +L A D + H+ ++
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG----GANPDAKD----HYEATAMHR 145
Query: 317 LQSSG-LVIKHPTVRNSRLLIAEDVNGNTPLHV 348
+ G L + H + +D GNTPLH+
Sbjct: 146 AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 178
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 20/187 (10%)
Query: 73 SVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN 132
S+ + D + LH A G IV+FL LQ GV ++ G +
Sbjct: 32 SLATRTDQDSRTALHWACSAGHTEIVEFL----------LQLGVPVNDKDDAGWS----- 76
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
PLH A ++ K L+ V + N+N TPL+ AA+ EI +L+ +P
Sbjct: 77 -PLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
+ TA+H A ++I L + ++ T ++D G TPLH A R +KL
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYY---KASTNIQDTEGNTPLHLACDEERVEEAKL 191
Query: 253 LLDHDKS 259
L+ S
Sbjct: 192 LVSQGAS 198
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 151 IVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-GKTALHAAVYTY 209
I+AD + ++++ T L+ A + G EIV +LQ P ++ D G + LH A
Sbjct: 27 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAG 85
Query: 210 PTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR- 268
E++K L K + ++ G TPLH+AA R + +LL+ A KD
Sbjct: 86 RDEIVKALL---GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGANPDAKDHY 139
Query: 269 NMTALHLAAASGHIMVVDRIL 289
TA+H AAA G++ ++ +L
Sbjct: 140 EATAMHRAAAKGNLKMIHILL 160
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 14/153 (9%)
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
D +TALH A TE+++ FL + + +D GW+PLH AA +GR+ K LL
Sbjct: 40 DSRTALHWACSAGHTEIVE--FLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALL-- 94
Query: 257 DKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDL 316
K A T LH AA+ + +L A D + H+ ++
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG----GANPDAKD----HYEATAMHR 146
Query: 317 LQSSG-LVIKHPTVRNSRLLIAEDVNGNTPLHV 348
+ G L + H + +D GNTPLH+
Sbjct: 147 AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 179
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
+PLH A R V ++LI+ + NR ++TPL++AA++G +IV K+LQ
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 94
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL 248
G LH A + +V + L + +L ++ +KYG P+ A REL
Sbjct: 95 AVNEHGNVPLHYACFWGQDQVAEDLVANG---ALVSICNKYGEMPVDKAKAPLREL 147
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRIL 289
D +G++PLH A GR ++L+ A I +R + T LHLAA+ GH +V ++L
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLI---MRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 87
Query: 290 SSCDGCCAKVDERGWNFLHFA------MVSLDLLQSSGLV 323
A V+E G LH+A V+ DL+ + LV
Sbjct: 88 QYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANGALV 126
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
G T LH V E+I+ L + + + DK GWTPLH AAY G ++LL
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNAS---DKSGWTPLHLAAYRGHLEIVEVLL--- 100
Query: 258 KSAAFIGGKD-RNMTALHLAAASGHIMVVDRIL 289
K A + D + T LHLAA GH+ +V+ +L
Sbjct: 101 KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNE---TPLYMAAANGSVEIVAKILQKCPSP 191
L EA R D +IL+ V N N+ TPL++ NG +EI+ +L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV----NANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
G T LH A Y E+++ L + D G+TPLH AA G +
Sbjct: 74 NASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD---VNAMDYQGYTPLHLAAEDGHLEIVE 130
Query: 252 LLLDHDKSAAFIGGKDR-NMTALHLAAASGH 281
+LL K A + +D+ TA ++ +G+
Sbjct: 131 VLL---KYGADVNAQDKFGKTAFDISIDNGN 158
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 33/187 (17%)
Query: 1 MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
+ +KL EAA G + R + + + D + IT HL + EI+ V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAND-------WFGITPLHLVVNNGHLEIIEVL 66
Query: 61 TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
K+ D++ S D G +PLHLAA +G IV+ L+K+
Sbjct: 67 LKYAA---DVNAS-----DKSGWTPLHLAAYRGHLEIVEVLLKYGAD------------- 105
Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
+ + + TPLH A +++ ++L+ V + ++ +T ++ NG+ E
Sbjct: 106 ---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAKILQK 187
+A+ILQK
Sbjct: 161 LAEILQK 167
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 5/165 (3%)
Query: 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK 187
++E T LH A +D+ K I V N TPL+ A G + +V ++++
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 188 CPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRE 247
P+ +G + +H A T ++ L K + D+ G TPL AAY
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLI---AKGQDVDMMDQNGMTPLMWAAYRTHS 155
Query: 248 LT-SKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSS 291
+ ++LLL + S +G K TALH A +G+ V+ +L +
Sbjct: 156 VDPTRLLLTFNVSVN-LGDKYHKNTALHWAVLAGNTTVISLLLEA 199
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 38 LYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAI 97
L G++ ++ L T +G + S+ + +++ D PS++ D +G S +HLAA+ G +I
Sbjct: 71 LGGDLNSTPLHWATRQGHL-SMVVQLMKYGAD--PSLI---DGEGCSCIHLAAQFGHTSI 124
Query: 98 VKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPL-HEAVRLRSVDVAKILIVADPH 156
V +LI AK Q D M ++ TPL A R SVD ++L+ +
Sbjct: 125 VAYLI--AKGQDVD--------------MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168
Query: 157 VPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA 205
V + T L+ A G+ +++ +L+ + + G++AL A
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
EA R D +IL+ V + N + TPL++AA+NG +EIV +L+
Sbjct: 20 EAARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLKNGADVNASDL 78
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
G T LH A T E+++ L H + D G TPLH AA G ++LL H
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLKHGADVN---AYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAA G IV+ L+K G + G+ TPLH A
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLK----------NGADVNASDLTGI------TPLHLA 87
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG 198
+++ ++L+ V N + TPL++AA G +EIV +L+ + G
Sbjct: 88 AATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFG 146
Query: 199 KTAL 202
KTA
Sbjct: 147 KTAF 150
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKD-RNMTALHLAAASGHIMVVDRIL 289
D G+TPLH AA +G ++LL K+ A + D +T LHLAAA+GH+ +V+ +L
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLL---KNGADVNASDLTGITPLHLAAATGHLEIVEVLL 100
Query: 290 SSCDGCCAKVDERGWNFLHFA 310
A D G LH A
Sbjct: 101 KHGADVNA-YDNDGHTPLHLA 120
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 8 AAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHI 67
AA+ G +E + ++ + +DL IT HL T EIV V ++H
Sbjct: 54 AASNGHLEIVEVLLKNGADVNASDLTG-------ITPLHLAAATGHLEIVEV---LLKHG 103
Query: 68 LDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIK 103
D++ D G +PLHLAAK G IV+ L+K
Sbjct: 104 ADVNAY-----DNDGHTPLHLAAKYGHLEIVEVLLK 134
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
+PLH A R V ++LI+ + NR ++TPL++AA++G +IV K+LQ
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL 248
G LH A + +V + L + +L ++ +KYG P+ A REL
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVANG---ALVSICNKYGEMPVDKAKAPLREL 152
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRIL 289
D +G++PLH A GR ++L+ A I +R + T LHLAA+ GH +V ++L
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLI---MRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 92
Query: 290 SSCDGCCAKVDERGWNFLHFA------MVSLDLLQSSGLV 323
A V+E G LH+A V+ DL+ + LV
Sbjct: 93 QYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANGALV 131
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
G T LH A + E+++ L H + RD GWTPLH AA +G ++LL
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKH---GADVNARDTDGWTPLHLAADNGHLEIVEVLL--- 100
Query: 258 KSAAFIGGKDR-NMTALHLAAASGHIMVVDRIL 289
K A + +D +T LHLAA GH+ +V+ +L
Sbjct: 101 KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
EA R D +IL+ V ++ + TPL++AA G EIV +L+
Sbjct: 20 EAARAGQDDEVRILMANGADVNAHDDQGS-TPLHLAAWIGHPEIVEVLLKHGADVNARDT 78
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
DG T LH A E+++ L + + +D YG TPLH AA G ++LL H
Sbjct: 79 DGWTPLHLAADNGHLEIVEVLL---KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK 187
+++ +TPLH A + ++ ++L+ V + + + TPL++AA NG +EIV +L+
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 188 CPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRE 247
+ G T LH A E+++ L H + +DK+G T + +G E
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH---GADVNAQDKFGKTAFDISIDNGNE 159
Query: 248 LTSKLL 253
+++L
Sbjct: 160 DLAEIL 165
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTK 62
+KL EAA G + R + + + D +T L HL EIV V
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPL-------HLAAWIGHPEIVEV--- 65
Query: 63 FVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQ 122
++H D++ D G +PLHLAA G IV+ L+K+ G +
Sbjct: 66 LLKHGADVNAR-----DTDGWTPLHLAADNGHLEIVEVLLKY----------GADVNAQD 110
Query: 123 MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVA 182
G+ TPLH A +++ ++L+ V + ++ +T ++ NG+ E +A
Sbjct: 111 AYGL------TPLHLAADRGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGN-EDLA 162
Query: 183 KILQKC 188
+ILQK
Sbjct: 163 EILQKL 168
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 241 AAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVD 300
AA +G++ ++L+ A D+ T LHLAA GH +V+ +L A+ D
Sbjct: 21 AARAGQDDEVRILMA--NGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR-D 77
Query: 301 ERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350
GW LH A + L I ++ + A+D G TPLH+ A
Sbjct: 78 TDGWTPLHLAA------DNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAA 121
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRIL 289
D GWTPLH AAY G ++LL K+ A + D +T LHLAA GH+ VV+ +L
Sbjct: 44 DHVGWTPLHLAAYFGHLEIVEVLL---KNGADVNADDSLGVTPLHLAADRGHLEVVEVLL 100
Query: 290 SSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSR 333
+ A D G+ LH A ++ L+ +++KH N++
Sbjct: 101 KNGADVNAN-DHNGFTPLHLA-ANIGHLEIVEVLLKHGADVNAQ 142
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 133 TPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS 190
TPLH A +++ ++L+ AD + S TPL++AA G +E+V +L+
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV---TPLHLAADRGHLEVVEVLLKNGAD 105
Query: 191 PAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTS 250
+G T LH A E+++ L H + +DK+G T + +G E +
Sbjct: 106 VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN---AQDKFGKTAFDISIDNGNEDLA 162
Query: 251 KLL 253
++L
Sbjct: 163 EIL 165
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTK 62
+KL EAA G + R + + + +D + T L+ HL EIV V K
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHL-------EIVEVLLK 68
Query: 63 FVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQ 122
+ + + D+ G +PLHLAA +G +V+ L+K + G
Sbjct: 69 --------NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGF------ 114
Query: 123 MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVA 182
TPLH A + +++ ++L+ V + ++ +T ++ NG+ E +A
Sbjct: 115 ----------TPLHLAANIGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDLA 162
Query: 183 KILQKC 188
+ILQK
Sbjct: 163 EILQKL 168
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 54/133 (40%), Gaps = 3/133 (2%)
Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
+G N E + L EA + V+ K L TPL+ AA V +V
Sbjct: 3 MGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 62
Query: 184 ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY 243
+LQ + G LH A EV + L H ++ V D + +TPLH AA
Sbjct: 63 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAA 119
Query: 244 SGRELTSKLLLDH 256
G+ KLLL H
Sbjct: 120 KGKYEICKLLLQH 132
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 75/201 (37%), Gaps = 64/201 (31%)
Query: 2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVST 61
DR+L EAA GD+E +++ T+Q SV+
Sbjct: 11 DRQLLEAAKAGDVETVKKLC--------------------------TVQ-------SVNC 37
Query: 62 KFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAER 121
+ +E + +PLH AA ++V++L LQ G +
Sbjct: 38 RDIE--------------GRQSTPLHFAAGYNRVSVVEYL----------LQHGADVHAK 73
Query: 122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIV 181
G+ PLH A +VA++L V V A+ TPL+ AAA G EI
Sbjct: 74 DKGGLV------PLHNACSYGHYEVAELL-VKHGAVVNVADLWKFTPLHEAAAKGKYEIC 126
Query: 182 AKILQKCPSPAHEGPDGKTAL 202
+LQ P + DG T L
Sbjct: 127 KLLLQHGADPTKKNRDGNTPL 147
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 230 RDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRI 288
RD GWTPLH AA+ G ++LL K+ A + KD +T LHLAA GH+ +V+ +
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 289 LSSCDGCCAKVDERGWNFLHFA 310
L + A D G+ LH A
Sbjct: 100 LKNGADVNAS-DSHGFTPLHLA 120
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
TPLH A +++ ++L+ V + + TPL++AA G +EIV +L+
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
G T LH A E+++ L + + +DK+G T + +G E +++
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLL---KNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 253 L 253
L
Sbjct: 165 L 165
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 33/188 (17%)
Query: 1 MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
+ +KL EAA G + R + + + D T L+ HL EIV V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHL-------EIVEVL 66
Query: 61 TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
K + + + D+ G +PLHLAA++G IV+ L+K
Sbjct: 67 LK--------NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD------------- 105
Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
+ ++ TPLH A + +++ ++L+ V + ++ +T ++ NG+ E
Sbjct: 106 ---VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAKILQKC 188
+A+ILQK
Sbjct: 161 LAEILQKL 168
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
M N E + L EA + V+ K L TPL+ AA V +V +L
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 186 QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSG 245
Q + G LH A EV + L H ++ V D + +TPLH AA G
Sbjct: 63 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKG 119
Query: 246 RELTSKLLLDH 256
+ KLLL H
Sbjct: 120 KYEICKLLLQH 130
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 75/201 (37%), Gaps = 64/201 (31%)
Query: 2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVST 61
DR+L EAA GD+E +++ T+Q SV+
Sbjct: 9 DRQLLEAAKAGDVETVKKLC--------------------------TVQ-------SVNC 35
Query: 62 KFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAER 121
+ +E + +PLH AA ++V++L LQ G +
Sbjct: 36 RDIE--------------GRQSTPLHFAAGYNRVSVVEYL----------LQHGADVHAK 71
Query: 122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIV 181
G+ PLH A +VA++L V V A+ TPL+ AAA G EI
Sbjct: 72 DKGGLV------PLHNACSYGHYEVAELL-VKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124
Query: 182 AKILQKCPSPAHEGPDGKTAL 202
+LQ P + DG T L
Sbjct: 125 KLLLQHGADPTKKNRDGNTPL 145
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 163 RNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEE 222
++ TPL+ AA NG E V K+L K DG T LH A E++K L
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA--- 63
Query: 223 KRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
K + R K G TP H A +G KLL
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Query: 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
G++PLH AAK G A VK L L +G R G NTPLH A +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKL----------LSKGADVNARSKDG------NTPLHLAAKN 52
Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIV 181
++ K+L+ V + +++ TP ++A NG EIV
Sbjct: 53 GHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIV 91
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
DG T LH A E +K+L K + R K G TPLH AA +G KLLL
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLL---SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-- 62
Query: 257 DKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGW 304
A + + ++ T HLA +GH +V ++L D A V+ R W
Sbjct: 63 -AKGADVNARSKDGNTPEHLAKKNGHHEIV-KLL---DAKGADVNARSW 106
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 70 LSPSVLFQADAK-GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTN 128
LS A +K G++PLHLAAK G A IVK L L +G R G
Sbjct: 29 LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL----------LAKGADVNARSKDG--- 75
Query: 129 EEQNTPLHEAVRLRSVDVAKIL 150
NTP H A + ++ K+L
Sbjct: 76 ---NTPEHLAKKNGHHEIVKLL 94
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 232 KYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS 290
K G TPLH+AA +G K LL K A T LHLAA +GH +V +L+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLL--SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA R D +IL+ V + + + +TPL++AA G +EIV +L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
G T LH A E+++ L + + T D YG+TPLH AA +G ++LL
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT---DTYGFTPLHLAADAGHLEIVEVLL 133
Query: 255 DHDKSAAFIGGKDR 268
K A + +D+
Sbjct: 134 ---KYGADVNAQDK 144
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 169 LYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTA 228
L AA G + V ++ E GKT LH A E+++ L H +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN--- 74
Query: 229 VRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDR 287
DK G TPLH AA G ++LL K+ A + D T LHLAA +GH+ +V+
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLL---KNGADVNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 288 IL 289
+L
Sbjct: 132 LL 133
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 79/191 (41%), Gaps = 43/191 (22%)
Query: 3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTK 62
+KL EAA G + R + + + D T L+ HL EIV V
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHL-------EIVEV--- 65
Query: 63 FVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQ 122
++H D++ AD GD+PLHLAA G IV+ L+K G
Sbjct: 66 LLKHGADVNA-----ADKMGDTPLHLAALYGHLEIVEVLLK----------NGADVNATD 110
Query: 123 MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRN-----NETPLYMAAANGS 177
G TPLH A +++ ++L+ Y A+ N +T ++ NG+
Sbjct: 111 TYGF------TPLHLAADAGHLEIVEVLL------KYGADVNAQDKFGKTAFDISIDNGN 158
Query: 178 VEIVAKILQKC 188
E +A+ILQK
Sbjct: 159 -EDLAEILQKL 168
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 267 DRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKH 326
D T LHLAA GH+ +V+ +L A D+ G LH A + L I
Sbjct: 45 DSGKTPLHLAAIKGHLEIVEVLLKHGADVNA-ADKMGDTPLHLAAL------YGHLEIVE 97
Query: 327 PTVRNSRLLIAEDVNGNTPLHVVAAVCRLS 356
++N + A D G TPLH+ A L
Sbjct: 98 VLLKNGADVNATDTYGFTPLHLAADAGHLE 127
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
G T LH A T E+++ L + D YG TPLH AA +G ++LL H
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGAD---VNAWDNYGATPLHLAADNGHLEIVEVLLKH- 102
Query: 258 KSAAFIGGKD-RNMTALHLAAASGHIMVVDRIL 289
A + KD T LHLAA GH+ +V+ +L
Sbjct: 103 --GADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA R D +IL+ V + + TPL++AA G +EIV +L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
G T LH A E+++ L H +D G+TPLH AAY G ++LL
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Query: 255 DHDKSAAFIGGKDR-NMTALHLAAASGH 281
K A + +D+ TA ++ +G+
Sbjct: 134 ---KYGADVNAQDKFGKTAFDISIDNGN 158
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRN-----NETPLYMAAANGSVEIVAKILQ 186
+TPLH A + +++ ++L+ Y A+ N TPL++AA NG +EIV +L+
Sbjct: 48 HTPLHLAAKTGHLEIVEVLL------KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 187 KCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR 246
+ +G T LH A Y E+++ L + +DK+G T + +G
Sbjct: 102 HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISIDNGN 158
Query: 247 ELTSKLL 253
E +++L
Sbjct: 159 EDLAEIL 165
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAAK G IV+ L+K+ + + TPLH A
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLLKYGAD----------------VNAWDNYGATPLHLA 87
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG 198
+++ ++L+ V + + TPL++AA +G +EIV +L+ + G
Sbjct: 88 ADNGHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 199 KTALHAAV 206
KTA ++
Sbjct: 147 KTAFDISI 154
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 33/187 (17%)
Query: 1 MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
+ +KL EAA G + R + + + TD + +T L HL +T EIV V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPL-------HLAAKTGHLEIVEVL 66
Query: 61 TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
K+ + D G +PLHLAA G IV+ L+K
Sbjct: 67 LKYGADV--------NAWDNYGATPLHLAADNGHLEIVEVLLKHGAD------------- 105
Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
+ + E TPLH A +++ ++L+ V + ++ +T ++ NG+ E
Sbjct: 106 ---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAKILQK 187
+A+ILQK
Sbjct: 161 LAEILQK 167
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 271 TALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSG-LVIKHPTV 329
T LHLAA +GH+ +V+ +L D W+ ++ L L +G L I +
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKY------GADVNAWD--NYGATPLHLAADNGHLEIVEVLL 100
Query: 330 RNSRLLIAEDVNGNTPLHVVA 350
++ + A+D G TPLH+ A
Sbjct: 101 KHGADVNAKDYEGFTPLHLAA 121
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 3/133 (2%)
Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAK 183
+ + N E + L EA + V+ K L TPL+ AA V +V
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 184 ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY 243
+LQ + G LH A EV + L H ++ V D + +TPLH AA
Sbjct: 65 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAA 121
Query: 244 SGRELTSKLLLDH 256
G+ KLLL H
Sbjct: 122 KGKYEICKLLLQH 134
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 75/201 (37%), Gaps = 64/201 (31%)
Query: 2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVST 61
DR+L EAA GD+E +++ T+Q SV+
Sbjct: 13 DRQLLEAAKAGDVETVKKLC--------------------------TVQ-------SVNC 39
Query: 62 KFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAER 121
+ +E + +PLH AA ++V++L LQ G +
Sbjct: 40 RDIE--------------GRQSTPLHFAAGYNRVSVVEYL----------LQHGADVHAK 75
Query: 122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIV 181
G+ PLH A +VA++L V V A+ TPL+ AAA G EI
Sbjct: 76 DKGGLV------PLHNACSYGHYEVAELL-VKHGAVVNVADLWKFTPLHEAAAKGKYEIC 128
Query: 182 AKILQKCPSPAHEGPDGKTAL 202
+LQ P + DG T L
Sbjct: 129 KLLLQHGADPTKKNRDGNTPL 149
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRIL 289
D GWTPLH AAY G ++LL K+ A + D T LHLAA GH+ +V+ +L
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLL---KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLL 100
Query: 290 SSCDGCCAKVDERGWNFLHFA 310
+ AK D+ G LH A
Sbjct: 101 KNGADVNAK-DDNGITPLHLA 120
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 21/130 (16%)
Query: 161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH 220
A R++E + MA NG+ A ++ G T LH A Y E+++ L
Sbjct: 24 AGRDDEVRILMA--NGADVNAADVV------------GWTPLHLAAYWGHLEIVEVLL-- 67
Query: 221 EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAAS 279
+ + D G TPLH AA+ G ++LL K+ A + KD N +T LHLAA
Sbjct: 68 -KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLL---KNGADVNAKDDNGITPLHLAANR 123
Query: 280 GHIMVVDRIL 289
GH+ +V+ +L
Sbjct: 124 GHLEIVEVLL 133
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
TPLH A +++ ++L+ V + + TPL++AA G +EIV +L+
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
+ +G T LH A E+++ L + +DK+G T + +G E +++
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISINNGNEDLAEI 164
Query: 253 L 253
L
Sbjct: 165 L 165
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 33/187 (17%)
Query: 1 MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
+ +KL EAA G + R + + + D++ T L+ HL EIV V
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHL-------EIVEVL 66
Query: 61 TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
K + + + D G +PLHLAA G IV+ L+K G+
Sbjct: 67 LK--------NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGI---- 114
Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
TPLH A +++ ++L+ V + ++ +T ++ NG+ E
Sbjct: 115 ------------TPLHLAANRGHLEIVEVLLKYGADVN-AQDKFGKTAFDISINNGN-ED 160
Query: 181 VAKILQK 187
+A+ILQK
Sbjct: 161 LAEILQK 167
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
TPLH AV ++ V +IL+ + + TPL +AA +V ++
Sbjct: 86 TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN 145
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
GKTALH A TE + L +H R +D TPL AA G SK
Sbjct: 146 AADNSGKTALHWAAAVNNTEAVNILLMHHANRD---AQDDKDETPLFLAAREGSYEASKA 202
Query: 253 LLDH 256
LLD+
Sbjct: 203 LLDN 206
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHE 221
++ ET L++AA + ++L + G+T LHAAV V Q+ L
Sbjct: 48 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVF-QILLRN 106
Query: 222 EKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL--DHDKSAAFIGGKDRNMTALHLAAAS 279
+L A R G TPL AA E + L+ D D +AA GK TALH AAA
Sbjct: 107 RATNLNA-RMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK----TALHWAAAV 161
Query: 280 GHIMVVDRIL 289
+ V+ +L
Sbjct: 162 NNTEAVNILL 171
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS- 190
N PLH+A + L+ + P + +++ PL+ + + + EI + +L K +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 191 PAHEGPD--GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL 248
+ PD G T H A EV+K L+ K L + ++ G T LH A
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFE 121
Query: 249 TSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFL 307
S+ L+++ S KD+ N LH AA+ G + +++ + D++GW L
Sbjct: 122 VSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 308 HFAM 311
A+
Sbjct: 179 FHAL 182
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 18/190 (9%)
Query: 123 MLGMTNEEQNTPLHEAVRLRSVDVAKILI--VADPHVPYSANRNNETPLYMAAANGSVEI 180
+L +++ PLH +V ++ ++ L+ + + ++ + + TP ++A + G++E+
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 181 VAKILQKCPSPAHEG--PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL 238
V + + P G T LH AV EV + FL E S+ ++DK+ PL
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ--FLIENGASVR-IKDKFNQIPL 144
Query: 239 HHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGH----IMVVDRILSSCD 293
H AA G +LL KSA + +D+ T L A A GH +++V++ + D
Sbjct: 145 HRAASVGSLKLIELLCGLGKSA--VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 294 GCCAKVDERG 303
VD +G
Sbjct: 203 ----LVDNKG 208
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 18/194 (9%)
Query: 64 VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQM 123
V+ +L PS+L Q D G PLH + I FL+ K +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-------------KMENVNL 64
Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNE--TPLYMAAANGSVEIV 181
++ TP H A + +++V K L P P N+ T L++A E+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 182 AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA 241
+++ S + + LH A ++I+ L +S +DK GWTPL HA
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE--LLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 242 AYSGRELTSKLLLD 255
G + LL++
Sbjct: 182 LAEGHGDAAVLLVE 195
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS- 190
N PLH+A + L+ + P + +++ PL+ + + + EI + +L K +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 191 PAHEGPD--GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL 248
+ PD G T H A EV+K L+ K L + ++ G T LH A
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFE 121
Query: 249 TSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFL 307
S+ L+++ S KD+ N LH AA+ G + +++ + D++GW L
Sbjct: 122 VSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 308 HFAM 311
A+
Sbjct: 179 FHAL 182
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 18/190 (9%)
Query: 123 MLGMTNEEQNTPLHEAVRLRSVDVAKILI--VADPHVPYSANRNNETPLYMAAANGSVEI 180
+L +++ PLH +V ++ ++ L+ + + ++ + + TP ++A + G++E+
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 181 VAKILQKCPSPAHEG--PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL 238
V + + P G T LH AV EV + FL E S+ ++DK+ PL
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ--FLIENGASVR-IKDKFNQIPL 144
Query: 239 HHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGH----IMVVDRILSSCD 293
H AA G +LL KSA + +D+ T L A A GH +++V++ + D
Sbjct: 145 HRAASVGSLKLIELLCGLGKSA--VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 294 GCCAKVDERG 303
VD +G
Sbjct: 203 ----LVDNKG 208
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 18/194 (9%)
Query: 64 VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQM 123
V+ +L PS+L Q D G PLH + I FL+ K +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-------------KMENVNL 64
Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNE--TPLYMAAANGSVEIV 181
++ TP H A + +++V K L P P N+ T L++A E+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 182 AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA 241
+++ S + + LH A ++I+ L +S +DK GWTPL HA
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE--LLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 242 AYSGRELTSKLLLD 255
G + LL++
Sbjct: 182 LAEGHGDAAVLLVE 195
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS- 190
N PLH+A + L+ + P + +++ PL+ + + + EI + +L K +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 191 PAHEGPD--GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGREL 248
+ PD G T H A EV+K L+ K L + ++ G T LH A
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFE 121
Query: 249 TSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFL 307
S+ L+++ S KD+ N LH AA+ G + +++ + D++GW L
Sbjct: 122 VSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 308 HFAM 311
A+
Sbjct: 179 FHAL 182
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 18/190 (9%)
Query: 123 MLGMTNEEQNTPLHEAVRLRSVDVAKILI--VADPHVPYSANRNNETPLYMAAANGSVEI 180
+L +++ PLH +V ++ ++ L+ + + ++ + + TP ++A + G++E+
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 181 VAKILQKCPSPAHEG--PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL 238
V + + P G T LH AV EV + FL E S+ ++DK+ PL
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ--FLIENGASVR-IKDKFNQIPL 144
Query: 239 HHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGH----IMVVDRILSSCD 293
H AA G +LL KSA + +D+ T L A A GH +++V++ + D
Sbjct: 145 HRAASVGSLKLIELLCGLGKSA--VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 294 GCCAKVDERG 303
VD +G
Sbjct: 203 ----LVDNKG 208
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 18/194 (9%)
Query: 64 VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQM 123
V+ +L PS+L Q D G PLH + I FL+ K +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-------------KMENVNL 64
Query: 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNE--TPLYMAAANGSVEIV 181
++ TP H A + +++V K L P P N+ T L++A E+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 182 AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA 241
+++ S + + LH A ++I+ L +S +DK GWTPL HA
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE--LLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 242 AYSGRELTSKLLLD 255
G + LL++
Sbjct: 182 LAEGHGDAAVLLVE 195
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA R D +IL+ V +A+ TPL++AA +G +EIV +L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
G T LH A Y E+++ L + + D G TPLH AA G ++LL
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLL---KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 255 DH 256
H
Sbjct: 134 KH 135
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
AD G +PLHLAA G IV+ L+K G + G TPLH
Sbjct: 43 ADNTGTTPLHLAAYSGHLEIVEVLLK----------HGADVDASDVFGY------TPLHL 86
Query: 138 AVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD 197
A +++ ++L+ V + + + TPL++AA G +EIV +L+ +
Sbjct: 87 AAYWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKF 145
Query: 198 GKTALHAAV 206
GKTA ++
Sbjct: 146 GKTAFDISI 154
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 33/186 (17%)
Query: 3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTK 62
RKL EAA G + R + + + D T L+ + HL EIV V
Sbjct: 16 RKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHL-------EIVEV--- 65
Query: 63 FVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQ 122
++H D+ S +F G +PLHLAA G IV+ L+K G
Sbjct: 66 LLKHGADVDASDVF-----GYTPLHLAAYWGHLEIVEVLLK----------NGADVNAMD 110
Query: 123 MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVA 182
GM TPLH A + +++ ++L+ V + ++ +T ++ NG+ E +A
Sbjct: 111 SDGM------TPLHLAAKWGYLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDLA 162
Query: 183 KILQKC 188
+ILQK
Sbjct: 163 EILQKL 168
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDH--DKSAAFIGGKDRNMTALHLAAASGHIMVVDRI 288
D G TPLH AAYSG ++LL H D A+ + G T LHLAA GH+ +V+ +
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG----YTPLHLAAYWGHLEIVEVL 99
Query: 289 LSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSR 333
L + A +D G LH A L+ +++KH N++
Sbjct: 100 LKNGADVNA-MDSDGMTPLHLA-AKWGYLEIVEVLLKHGADVNAQ 142
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
TPLH A +++ ++L+ V S + TPL++AA G +EIV +L+
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGADVN 107
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
DG T LH A E+++ L H + +DK+G T + +G E +++
Sbjct: 108 AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN---AQDKFGKTAFDISIDNGNEDLAEI 164
Query: 253 L 253
L
Sbjct: 165 L 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA R D +IL+ A+ + + TPL+MAAA G +EIV +L+
Sbjct: 6 LLEAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
+G T LH A E+++ L + + +D G TPL+ AAY G ++LL
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADVN---AKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 255 DH 256
H
Sbjct: 122 KH 123
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
TPLH A + +++ ++L+ V + + N TPL++AA+ G +EIV +L+
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
+ G T L+ A Y E+++ L H + +DK+G T + G E +++
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEVLLKHGADVN---AQDKFGKTAFDISIDIGNEDLAEI 152
Query: 253 L 253
L
Sbjct: 153 L 153
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
G+T LH A E+++ L + AV D G TPLH AA G ++LL
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLL--RNGADVNAV-DTNGTTPLHLAASLGHLEIVEVLL--- 88
Query: 258 KSAAFIGGKD-RNMTALHLAAASGHIMVVDRIL 289
K A + KD +T L+LAA GH+ +V+ +L
Sbjct: 89 KYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 271 TALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVR 330
T LH+AAA GH+ +V+ +L + A VD G LH A SL L+ +++K+
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVNA-VDTNGTTPLHLA-ASLGHLEIVEVLLKYGADV 94
Query: 331 NSRLLIAEDVNGNTPLHVVA 350
N A+D G TPL++ A
Sbjct: 95 N-----AKDATGITPLYLAA 109
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 41/190 (21%)
Query: 1 MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
+ +KL EAA G + R + + ++ D T L+ HL EIV V
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHL-------EIVEVL 54
Query: 61 TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
+ + + + D G +PLHLAA G IV+ L+K+ G
Sbjct: 55 LR--------NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKY----------GADVNA 96
Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
+ G+ TPL+ A +++ ++L+ + A+ N + A + S++I
Sbjct: 97 KDATGI------TPLYLAAYWGHLEIVEVLL------KHGADVNAQDKFGKTAFDISIDI 144
Query: 181 ----VAKILQ 186
+A+ILQ
Sbjct: 145 GNEDLAEILQ 154
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 132 NTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191
+TPLH A R+ +++ ++L+ V + + + TPL++AA G +EIV +L+
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
+ G T LH A T E+++ L + + +DK+G T + +G E ++
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN---AQDKFGKTAFDISIDNGNEDLAE 163
Query: 252 LL 253
+L
Sbjct: 164 IL 165
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 43/189 (22%)
Query: 3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTK 62
+KL EAA G + R + + + D +T L+ HL EIV V K
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHL-------EIVEVLLK 68
Query: 63 FVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQ 122
+ + + D G +PLHLAAK+G IV+ L+K+ D G
Sbjct: 69 --------NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIG------- 113
Query: 123 MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRN-----NETPLYMAAANGS 177
+TPLH A +++ ++L+ Y A+ N +T ++ NG+
Sbjct: 114 ---------STPLHLAADTGHLEIVEVLL------KYGADVNAQDKFGKTAFDISIDNGN 158
Query: 178 VEIVAKILQ 186
E +A+ILQ
Sbjct: 159 -EDLAEILQ 166
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
G T LH A E+++ L + + A+ D G TPLH AA G ++LL
Sbjct: 47 GDTPLHLAARVGHLEIVEVLL--KNGADVNAL-DFSGSTPLHLAAKRGHLEIVEVLL--- 100
Query: 258 KSAAFIGGKDR-NMTALHLAAASGHIMVVDRIL 289
K A + D T LHLAA +GH+ +V+ +L
Sbjct: 101 KYGADVNADDTIGSTPLHLAADTGHLEIVEVLL 133
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRILSSCDGCC 296
L AA +G++ ++L+ + A + +D T LHLAA GH+ +V+ +L +
Sbjct: 18 LLEAARAGQDDEVRILM---ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 297 AKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRL 355
A +D G LH A + L I ++ + A+D G+TPLH+ A L
Sbjct: 75 A-LDFSGSTPLHLAA------KRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHL 126
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257
G+T LH A ++ L + S V+D GWTPLH A G +LLL H
Sbjct: 10 GETLLHIASIKGDIPSVEYLL---QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 258 KSAAFIGGKDRNMTALHLAAASGHIMVVDRILS 290
G +N + LH AA +GH+ +V +LS
Sbjct: 67 ALVNTTGY--QNDSPLHDAAKNGHVDIVKLLLS 97
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 17/105 (16%)
Query: 81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR 140
+G++ LH+A+ KGD V++L LQ G + G TPLHEA
Sbjct: 9 RGETLLHIASIKGDIPSVEYL----------LQNGSDPNVKDHAGW------TPLHEACN 52
Query: 141 LRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185
+ V ++L+ V + + N++PL+ AA NG V+IV +L
Sbjct: 53 HGHLKVVELLLQHKALVNTTGYQ-NDSPLHDAAKNGHVDIVKLLL 96
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 22/86 (25%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLH A G +V+ L++ + ++ T + ++PLH+A
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQ----------------HKALVNTTGYQNDSPLHDA 83
Query: 139 VRLRSVDVAKILIVADPHVPYSANRN 164
+ VD+ K+L+ Y A+RN
Sbjct: 84 AKNGHVDIVKLLL------SYGASRN 103
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 8 AAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHI 67
A+ KGDI + ++ + V D T L+ HL K VE +
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHL--------------KVVELL 62
Query: 68 LDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFA 105
L +++ + DSPLH AAK G IVK L+ +
Sbjct: 63 LQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
EA R D +IL+ V + + + TPL++AA G +EIV +L+
Sbjct: 20 EAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
G T LH A E+++ L H + AV D +G TPLH AA G ++LL H
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLKH--GADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKH 135
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
DA G +PLHLAA G IV+ L+K G + G +TPLH A
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLK----------HGADVNAIDIXG------STPLHLA 87
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG 198
+ +++ ++L+ V + + +TPL++AA G +EIV +L+ + G
Sbjct: 88 ALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 199 KTA 201
KTA
Sbjct: 147 KTA 149
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 33/188 (17%)
Query: 1 MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
+ +KL EAA G + R + + + TD T L+ T HL EIV V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHL-------EIVEV- 65
Query: 61 TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
++H D++ D G +PLHLAA G IV+ L+K
Sbjct: 66 --LLKHGADVNA-----IDIXGSTPLHLAALIGHLEIVEVLLKHGAD------------- 105
Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
+ + +TPLH A + +++ ++L+ V + ++ +T ++ NG+ E
Sbjct: 106 ---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAKILQKC 188
+A+ILQK
Sbjct: 161 LAEILQKL 168
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH- 256
G T LH A E+++ L H + A+ D G TPLH AA G ++LL H
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKH--GADVNAI-DIXGSTPLHLAALIGHLEIVEVLLKHG 103
Query: 257 -DKSAAFIGGKDRNMTALHLAAASGHIMVVDRIL 289
D +A G T LHLAA GH+ +V+ +L
Sbjct: 104 ADVNAVDTWGD----TPLHLAAIMGHLEIVEVLL 133
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 241 AAYSGRELTSKLLLDHDKSAAFIGGKD-RNMTALHLAAASGHIMVVDRILSSCDGCCAKV 299
AA +G++ ++L+ + A + D +T LHLAA GH+ +V+ +L A +
Sbjct: 21 AARAGQDDEVRILM---ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA-I 76
Query: 300 DERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRL 355
D G LH A + + L+ +++KH N A D G+TPLH+ A + L
Sbjct: 77 DIXGSTPLHLAAL-IGHLEIVEVLLKHGADVN-----AVDTWGDTPLHLAAIMGHL 126
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 20/140 (14%)
Query: 77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLH 136
Q GDS LHLA + A+ +I+ K + L N Q TPLH
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVK------------GDLAFLNFQNNLQQTPLH 50
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP----- 191
AV ++A+ L+ A R N TPL++A G + V + Q C +P
Sbjct: 51 LAVITNQPEIAEALLGAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQSCTTPHLHSI 109
Query: 192 -AHEGPDGKTALH-AAVYTY 209
+G T LH A+++ Y
Sbjct: 110 LKATNYNGHTCLHLASIHGY 129
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D +G++PLHLA ++G A V L Q +L TN +T LH A
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLT----------QSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC 188
+ + ++L+ V N T L++A + ++V+ +L KC
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KC 173
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 172 AAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRD 231
++ G ++V +I+ + P+ +G TALH AV TE++K FL + ++ A D
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVK--FLVQFGVNVNAA-D 100
Query: 232 KYGWTPLHHAAYSGRELTSKLLLD 255
GWTPLH AA K L++
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVE 124
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 22/94 (23%)
Query: 64 VEHILDLSPSVLFQADA------KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVK 117
+E DL ++++ D +G + LH A G IVKFL++F GV
Sbjct: 46 LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF----------GVN 95
Query: 118 SAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILI 151
+ + + TPLH A +V V K L+
Sbjct: 96 ------VNAADSDGWTPLHCAASCNNVQVCKFLV 123
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 165 NETPLYM---AAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHE 221
N PL + ++ G ++V +I+ + P+ +G TALH AV TE++K FL +
Sbjct: 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVK--FLVQ 91
Query: 222 EKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLD 255
++ A D GWTPLH AA K L++
Sbjct: 92 FGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVE 124
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 22/94 (23%)
Query: 64 VEHILDLSPSVLFQADA------KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVK 117
+E DL ++++ D +G + LH A G IVKFL++F GV
Sbjct: 46 LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF----------GVN 95
Query: 118 SAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILI 151
+ + + TPLH A +V V K L+
Sbjct: 96 ------VNAADSDGWTPLHCAASCNNVQVCKFLV 123
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 77/198 (38%), Gaps = 19/198 (9%)
Query: 130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP 189
E N L +AV+ VD+ + L+ +V + TPL+ A +IV +L+
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 190 SPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELT 249
P +G T A +++K LFL K + D YG+T AA G+
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLK-LFL--SKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 250 SKLLL------------DHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA 297
K L D+ GG TAL AA GH+ V+ +L
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGG----ATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 298 KVDERGWNFLHFAMVSLD 315
D G N L A++S D
Sbjct: 177 ACDNMGRNALIHALLSSD 194
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 20/135 (14%)
Query: 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
GDS LHLA + A+ +I+ K + L N Q TPLH AV
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVK------------GDLAFLNFQNNLQQTPLHLAVIT 52
Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP------AHEG 195
++A+ L+ A R N TPL++A G + V + Q C +P
Sbjct: 53 NQPEIAEALLGAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 111
Query: 196 PDGKTALH-AAVYTY 209
+G T LH A+++ Y
Sbjct: 112 YNGHTCLHLASIHGY 126
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D +G++PLHLA ++G A V L Q +L TN +T LH A
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVLT----------QSCTTPHLHSILKATNYNGHTCLHLA 121
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC 188
+ + ++L+ V N T L++A + ++V+ +L KC
Sbjct: 122 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KC 170
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 199 KTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSG-----RELTSKLL 253
+T LH AV T E+ + L +RD G TPLH A G LT
Sbjct: 43 QTPLHLAVITNQPEIAEALL---GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 99
Query: 254 LDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAM 311
H S + + N T LHLA+ G++ +V+ ++S A+ G LH A+
Sbjct: 100 TPHLHS--ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 156
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
EA R D +IL+ V + + + TPL++AA G +EIV +L+
Sbjct: 20 EAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
G T LH A E+++ L H + AV D +G TPLH AA G ++LL H
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKH--GADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKH 135
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
DA G +PLHLAA G IV+ L+K G ++G +TPLH A
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLK----------HGADVNAIDIMG------STPLHLA 87
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG 198
+ +++ ++L+ V + + +TPL++AA G +EIV +L+ + G
Sbjct: 88 ALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 199 KTA 201
KTA
Sbjct: 147 KTA 149
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 33/188 (17%)
Query: 1 MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
+ +KL EAA G + R + + + TD T L+ T HL EIV V
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHL-------EIVEV- 65
Query: 61 TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
++H D++ D G +PLHLAA G IV+ L+K
Sbjct: 66 --LLKHGADVNA-----IDIMGSTPLHLAALIGHLEIVEVLLKHGAD------------- 105
Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEI 180
+ + +TPLH A + +++ ++L+ V + ++ +T ++ NG+ E
Sbjct: 106 ---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAKILQKC 188
+A+ILQK
Sbjct: 161 LAEILQKL 168
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH- 256
G T LH A E+++ L H + A+ D G TPLH AA G ++LL H
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKH--GADVNAI-DIMGSTPLHLAALIGHLEIVEVLLKHG 103
Query: 257 -DKSAAFIGGKDRNMTALHLAAASGHIMVVDRIL 289
D +A G T LHLAA GH+ +V+ +L
Sbjct: 104 ADVNAVDTWGD----TPLHLAAIMGHLEIVEVLL 133
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 241 AAYSGRELTSKLLLDHDKSAAFIGGKD-RNMTALHLAAASGHIMVVDRILSSCDGCCAKV 299
AA +G++ ++L+ + A + D +T LHLAA GH+ +V+ +L A +
Sbjct: 21 AARAGQDDEVRILM---ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA-I 76
Query: 300 DERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRL 355
D G LH A + + L+ +++KH N A D G+TPLH+ A + L
Sbjct: 77 DIMGSTPLHLAAL-IGHLEIVEVLLKHGADVN-----AVDTWGDTPLHLAAIMGHL 126
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 77/198 (38%), Gaps = 19/198 (9%)
Query: 130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP 189
E N L +AV+ VD+ + L+ +V + TPL+ A +IV +L+
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 190 SPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELT 249
P +G T A +++K LFL K + D YG+T AA G+
Sbjct: 84 DPVLRKKNGATPFILAAIAGSVKLLK-LFL--SKGADVNECDFYGFTAFMEAAVYGKVKA 140
Query: 250 SKLLL------------DHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA 297
K L D+ GG TAL AA GH+ V+ +L
Sbjct: 141 LKFLYKRGANVNLRRKTKEDQERLRKGG----ATALMDAAEKGHVEVLKILLDEMGADVN 196
Query: 298 KVDERGWNFLHFAMVSLD 315
D G N L A++S D
Sbjct: 197 ACDNMGRNALIHALLSSD 214
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 53 EGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDL 112
+GE++ ++T+ + +V+ D +G +PL AA G A+V+FL L
Sbjct: 29 QGEMLYLATRIEQE------NVINHTDEEGFTPLMWAAAHGQIAVVEFL----------L 72
Query: 113 QRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMA 172
Q G A+ Q+LG E + L A D+ K+L+ V + N TPL A
Sbjct: 73 QNG---ADPQLLGKGRE---SALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYA 125
Query: 173 AANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV 206
V+ V +L+ P E G ++ AV
Sbjct: 126 VHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 159
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 167 TPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSL 226
TPL AAA+G + +V +LQ P G ++AL A T+++K L
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL------DC 107
Query: 227 TAVRDKYGW---TPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGH 281
++Y W TPL +A + K+LL+ D ++ LA A G+
Sbjct: 108 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI--ETDSGYNSMDLAVALGY 163
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 230 RDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRI 288
D GWTPLH AA++G ++LL K+ A + D MT L LAA GH+ +V+ +
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLL---KNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 289 LSSCDGCCAKVDERGWNFLHFA 310
L + A D G LH A
Sbjct: 100 LKNGADVNAN-DMEGHTPLHLA 120
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
DA G +PLHLAA G IV+ L+K G GM TPL A
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLK----------NGADVNAVDHAGM------TPLRLA 87
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG 198
+++ ++L+ V + + TPL++AA G +EIV +L+ + G
Sbjct: 88 ALFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 199 KTALHAAV 206
KTA ++
Sbjct: 147 KTAFDISI 154
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
TPLH A +++ ++L+ V + + TPL +AA G +EIV +L+
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 193 HEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKL 252
+G T LH A E+++ L + + +DK+G T + +G E +++
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLL---KNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 253 L 253
L
Sbjct: 165 L 165
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 53 EGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDL 112
+GE++ ++T+ + +V+ D +G +PL AA G A+V+FL L
Sbjct: 11 QGEMLYLATRIEQE------NVINHTDEEGFTPLMWAAAHGQIAVVEFL----------L 54
Query: 113 QRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMA 172
Q G A+ Q+LG E + L A D+ K+L+ V + N TPL A
Sbjct: 55 QNG---ADPQLLGKGRE---SALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYA 107
Query: 173 AANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV 206
V+ V +L+ P E G ++ AV
Sbjct: 108 VHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 141
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 167 TPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSL 226
TPL AAA+G + +V +LQ P G ++AL A T+++K L
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL------DC 89
Query: 227 TAVRDKYGW---TPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGH 281
++Y W TPL +A + K+LL+ D ++ LA A G+
Sbjct: 90 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI--ETDSGYNSMDLAVALGY 145
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 158 PYSANRNNETPLYM---AAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVI 214
P A R PL + AA G +E+V + +++ P+ +G TALH A+ ++
Sbjct: 11 PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIV 70
Query: 215 KQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
FL ++ + D +GWTPLH AA + L+ H
Sbjct: 71 D--FLITAGANVNSP-DSHGWTPLHCAASCNDTVICMALVQH 109
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNN---ETPLYMAAANGSVEIVAKILQKCPSP 191
L EA R D +IL V N N+ TPL++AA G +EIV +L+
Sbjct: 18 LLEAARAGQDDEVRILTANGADV----NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
G G+T LH A + E+++ L H + +DK+G T + +G E ++
Sbjct: 74 NATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN---AQDKFGKTAFDISIDNGNEDLAE 130
Query: 252 LL 253
+L
Sbjct: 131 IL 132
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAA G IV+ L+K A+ G T TPLH A
Sbjct: 44 DYWGHTPLHLAAMLGHLEIVEVLLK-------------NGADVNATGNTGR---TPLHLA 87
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK 187
+++ ++L+ V + ++ +T ++ NG+ E +A+ILQK
Sbjct: 88 AWADHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQK 134
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 65/156 (41%), Gaps = 41/156 (26%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA R D +ILI V + + TPL++AA +G +EIV +L+
Sbjct: 18 LLEAARAGQDDEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLK-------H 69
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLL 254
G D A D YG+TPLH AA +G ++LL
Sbjct: 70 GADVDAA-----------------------------DVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 255 DHDKSAAFIGGKD-RNMTALHLAAASGHIMVVDRIL 289
K A + D T LHLAA GH+ +V+ +L
Sbjct: 101 ---KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 27/143 (18%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAA G IV+ L+K G + G T PLH A
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLK----------HGADVDAADVYGFT------PLHLA 87
Query: 139 VRLRSVDVAKILIVADPHVPYSANRN-----NETPLYMAAANGSVEIVAKILQKCPSPAH 193
+++ ++L+ Y A+ N TPL++AA G +EIV +L+
Sbjct: 88 AMTGHLEIVEVLL------KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 194 EGPDGKTALHAAVYTYPTEVIKQ 216
+ GKTA ++ ++ K
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAKS 164
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 37/179 (20%)
Query: 1 MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
+ +KL EAA G + R + I N V +T HL + EIV V
Sbjct: 14 LGKKLLEAARAGQDDEVRIL-------IANGADVNAVDNTGLTPLHLAAVSGHLEIVEV- 65
Query: 61 TKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120
++H D+ AD G +PLHLAA G IV+ L+K+ A+
Sbjct: 66 --LLKHGADVDA-----ADVYGFTPLHLAAMTGHLEIVEVLLKYG-------------AD 105
Query: 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVE 179
MT +TPLH A +++ ++L+ Y A+ N + A + S++
Sbjct: 106 VNAFDMTG---STPLHLAADEGHLEIVEVLL------KYGADVNAQDKFGKTAFDISID 155
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 270 MTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVS--LDLLQSSGLVIKHP 327
+T LHLAA SGH+ +V+ +L A D G+ LH A ++ L++++ +++K+
Sbjct: 48 LTPLHLAAVSGHLEIVEVLLKHGADVDA-ADVYGFTPLHLAAMTGHLEIVE---VLLKYG 103
Query: 328 TVRNSRLLIAEDVNGNTPLHVVA 350
N A D+ G+TPLH+ A
Sbjct: 104 ADVN-----AFDMTGSTPLHLAA 121
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 53 EGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDL 112
+GE++ ++T+ + +V+ D +G +PL AA G A+V+FL L
Sbjct: 13 QGEMLYLATRIEQE------NVINHTDEEGFTPLMWAAAHGQIAVVEFL----------L 56
Query: 113 QRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMA 172
Q G A+ Q+LG E + L A D+ K+L+ V + N TPL A
Sbjct: 57 QNG---ADPQLLGKGRE---SALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYA 109
Query: 173 AANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV---YTYPTEVIKQLFL 219
V+ V +L+ P E G ++ AV Y +VI+ L
Sbjct: 110 VHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 167 TPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSL 226
TPL AAA+G + +V +LQ P G ++AL A T+++K L
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL------DC 91
Query: 227 TAVRDKYGW---TPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGH 281
++Y W TPL +A + K+LL+ D ++ LA A G+
Sbjct: 92 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI--ETDSGYNSMDLAVALGY 147
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP 196
EA R D +IL+ V + +R TPL++AA +EIV +L+
Sbjct: 20 EAARAGQDDEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDN 78
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
DG T LH A E+++ L H + +DK+G T + +G E +++L
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKH---GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 230 RDKYGWTPLHHAA-YSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDR 287
D+ G TPLH AA Y E+ LL K A + D + T LHLAA GH+ +V+
Sbjct: 43 NDRKGNTPLHLAADYDHLEIVEVLL----KHGADVNAHDNDGSTPLHLAALFGHLEIVEV 98
Query: 288 IL 289
+L
Sbjct: 99 LL 100
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTK 62
+KL EAA G + R + + + D NT L HL + EIV V
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNANDRKGNTPL-------HLAADYDHLEIVEV--- 65
Query: 63 FVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIK 103
++H D++ D G +PLHLAA G IV+ L+K
Sbjct: 66 LLKHGADVNAH-----DNDGSTPLHLAALFGHLEIVEVLLK 101
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 18/109 (16%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D KG++PLHLAA IV+ L+K + + + +TPLH A
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGAD----------------VNAHDNDGSTPLHLA 87
Query: 139 VRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK 187
+++ ++L+ V + ++ +T ++ NG+ E +A+ILQK
Sbjct: 88 ALFGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQK 134
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 169 LYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLT 227
L AAA G V+ V ++L + P GKTAL ++ ++ L ++ +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL----KQGASP 67
Query: 228 AVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDR 287
V+D G +P+H AA +G T K+L++H G +HLA GH VV
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT--GALPIHLAVQEGHTAVVSF 125
Query: 288 ILSSCDGCCAKVDERGWNFLHFAM 311
+ + D + D RG L A+
Sbjct: 126 LAAESD--LHRRDARGLTPLELAL 147
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 89 AAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQML-------------GMTNEEQNT-- 133
AA +GD V+ L+ P L R K+A + M+ G + Q+T
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSG 74
Query: 134 --PLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVA 182
P+H+A R +D K+L+ AD +VP + P+++A G +V+
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNVP---DGTGALPIHLAVQEGHTAVVS 124
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 42/150 (28%)
Query: 4 KLFEAAAKGDIEPFREIARDELESIVTDLMN-------NTVLYGNIT-ASHLTLQTEEGE 55
+L AAA+GD++ R + EL + D +N +++G+ A L Q
Sbjct: 11 RLSGAAARGDVQEVRRLLHREL--VHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 68
Query: 56 IVSVS----------TKF-------VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIV 98
+ S T F VEH D++ D G P+HLA ++G A+V
Sbjct: 69 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-----DGTGALPIHLAVQEGHTAVV 123
Query: 99 KFLIKFAKKQPRD----------LQRGVKS 118
FL + RD LQRG +
Sbjct: 124 SFLAAESDLHRRDARGLTPLELALQRGAQD 153
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 169 LYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLT 227
L AAA G V+ V ++L + P GKTAL ++ ++ L ++ +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL----KQGASP 61
Query: 228 AVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDR 287
V+D G +P+H AA +G T K+L++H G +HLA GH VV
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT--GALPIHLAVQEGHTAVVSF 119
Query: 288 ILSSCDGCCAKVDERGWNFLHFAM 311
+ + D + D RG L A+
Sbjct: 120 LAAESD--LHRRDARGLTPLELAL 141
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 89 AAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQML-------------GMTNEEQNT-- 133
AA +GD V+ L+ P L R K+A + M+ G + Q+T
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSG 68
Query: 134 --PLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVA 182
P+H+A R +D K+L+ AD +VP + P+++A G +V+
Sbjct: 69 TSPVHDAARTGFLDTLKVLVEHGADVNVP---DGTGALPIHLAVQEGHTAVVS 118
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 42/150 (28%)
Query: 4 KLFEAAAKGDIEPFREIARDELESIVTDLMN-------NTVLYGNIT-ASHLTLQTEEGE 55
+L AAA+GD++ R + EL + D +N +++G+ A L Q
Sbjct: 5 RLSGAAARGDVQEVRRLLHREL--VHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 62
Query: 56 IVSVS----------TKF-------VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIV 98
+ S T F VEH D++ D G P+HLA ++G A+V
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-----DGTGALPIHLAVQEGHTAVV 117
Query: 99 KFLIKFAKKQPRD----------LQRGVKS 118
FL + RD LQRG +
Sbjct: 118 SFLAAESDLHRRDARGLTPLELALQRGAQD 147
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA R D +IL+ V + + TPLY+A A+G +EIV +L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
G T LH A + E+ + L H + +DK+G T + +G E +++L
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVN---AQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 230 RDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRI 288
+D+YG TPL+ A G ++LL K+ A + D T LHLAA GH+ + + +
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLL---KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99
Query: 289 L 289
L
Sbjct: 100 L 100
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 21/124 (16%)
Query: 83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLR 142
D A K GD VK + + R L+ G K PLH A
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRK----------------PLHYAADCG 46
Query: 143 SVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKT 200
+++ + L++ AD + P ++++ TPL A G V V +L K +GPDG T
Sbjct: 47 QLEILEFLLLKGADINAP---DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 103
Query: 201 ALHA 204
AL A
Sbjct: 104 ALEA 107
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 28/121 (23%)
Query: 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
G+ PL LAA AIVKFL++ + QP D+ + R +G NT LH V +
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSW-QPADI------SARDSVG------NTVLHALVEV 194
Query: 142 --RSVDVAK--------ILIVADPHVPY-----SANRNNETPLYMAAANGSVEIVAKILQ 186
+VD K ILI+ P NR TPL +AA++G + ++A ILQ
Sbjct: 195 ADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254
Query: 187 K 187
+
Sbjct: 255 R 255
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 63/173 (36%), Gaps = 38/173 (21%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRN-------------NETPLYMAAANGSVE 179
T LH A+ R+ + +L+ V +AN + E PL +AA +
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 180 IVAKILQKCPSPAH---EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWT 236
IV +LQ PA G T LHA V V F+ + + K
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKL--- 219
Query: 237 PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRIL 289
H E+T++ + +T L LAA+SG I V+ IL
Sbjct: 220 ---HPTLKLEEITNR----------------KGLTPLALAASSGKIGVLAYIL 253
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 167 TPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSL 226
L AAA G +E + +LQ + + G+TAL P E+ ++L L L
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRGANPDL 65
Query: 227 TAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD 286
+D+ G+ +H AA +G+ T + LL+ ++ I + N+ LHLAA GH+ VV+
Sbjct: 66 ---KDRTGFAVIHDAARAGQLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVE 120
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
Query: 76 FQADA-----KGDSPLHLAAKKGDAAIVKFLIK 103
FQAD +G+ PLHLAAK+G +V+FL+K
Sbjct: 92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 16/142 (11%)
Query: 162 NRNNETPLYMAAANGSVEIVAK---ILQKCPSPAHEGP--------DGKTALHAAVYTYP 210
+RN T L + A N + VA +++K ++G G+TALH A
Sbjct: 232 DRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291
Query: 211 TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNM 270
++K +L EK S +D+ G TP+ AA GR L+ S + D
Sbjct: 292 XPIVK--YLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATD--H 347
Query: 271 TALHLAAASGHIMVVDRILSSC 292
TA LA A+ H +VD I C
Sbjct: 348 TARQLAQANNHHNIVD-IFDRC 368
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS 190
T LH A ++ + + K L+ + + +TP+ +AA G +E+V ++Q+ S
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 167 TPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSL 226
L AAA G +E + +LQ + + G+TAL P E+ ++L L L
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRGANPDL 65
Query: 227 TAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD 286
+D+ G+ +H AA +G T + LL+ +++ I + N+ LHLAA GH+ VV+
Sbjct: 66 ---KDRTGFAVIHDAARAGFLDTLQTLLE-NQADVNIEDNEGNLP-LHLAAKEGHLRVVE 120
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIK 103
D +G+ PLHLAAK+G +V+FL+K
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 126 MTNEEQNTPLHEAVRLRSVDVAKILIVADP-HVP-YSANRNNETPLYMAAANGSVEIVAK 183
+T E + L EA R S + K++ + P +V ++++ TPL++AA V IV
Sbjct: 19 LTGEYKKDELLEAAR--SGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76
Query: 184 ILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY 243
+LQ + G LH A EV + L H + D + +TPLH AA
Sbjct: 77 LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH---GACVNAMDLWQFTPLHEAAS 133
Query: 244 SGRELTSKLLLDH 256
R LLL H
Sbjct: 134 KNRVEVCSLLLSH 146
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 106/262 (40%), Gaps = 51/262 (19%)
Query: 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHE 137
+D + +PLHLAA IV+ L LQ G + G+ PLH
Sbjct: 54 SDGRKSTPLHLAAGYNRVRIVQLL----------LQHGADVHAKDKGGL------VPLHN 97
Query: 138 AVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD 197
A +V ++L+ V + + TPL+ AA+ VE+ + +L P
Sbjct: 98 ACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH 156
Query: 198 GKTALHAAVYTYPTEVIKQLFLHEEKRS--LTAVRD--------------------KYGW 235
GK+A+ A PT +++ +E K L A R+ +
Sbjct: 157 GKSAVDMA----PTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212
Query: 236 TPLHHAAYS---GRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSS 291
T LH A S R+ ++LLL + A + K+++ MT LH+AA H V++ +L
Sbjct: 213 TALHCAVASLHPKRKQVAELLL---RKGANVNEKNKDFMTPLHVAAERAHNDVME-VLHK 268
Query: 292 CDGCCAKVDERGWNFLHFAMVS 313
+D G LH A ++
Sbjct: 269 HGAKMNALDSLGQTALHRAALA 290
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 22/193 (11%)
Query: 84 SPLHLAAKKGDAAIVKFLIKFAK---------KQPRDLQRGVKSAERQMLGMTNEEQNTP 134
+PLH AA K + L+ K D+ + ER +T E +
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER----LTYEFKGHS 181
Query: 135 LHEAVRLRSVDVAKIL-IVADPHVPYSANRNNETPLYMAAAN---GSVEIVAKILQKCPS 190
L +A R D+AK+ +A + + +++ET L+ A A+ ++ +L+K +
Sbjct: 182 LLQAAR--EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239
Query: 191 PAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTS 250
+ D T LH A +V++ LH+ + A+ D G T LH AA +G T
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVME--VLHKHGAKMNAL-DSLGQTALHRAALAGHLQTC 296
Query: 251 KLLLDHDKSAAFI 263
+LLL + + I
Sbjct: 297 RLLLSYGSDPSII 309
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA R D +IL+ V + + + TPL++AA G +EIV +L+ E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
G T LH A E+++ L H + +DK+G T + +G E +++L
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLKH---GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 24/113 (21%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN---TPL 135
D G +PLHLAA+ G IV+ L+K+ N E N TPL
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD-------------------VNAEDNFGITPL 84
Query: 136 HEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC 188
H A +++ ++L+ V + ++ +T ++ NG+ E +A+ILQK
Sbjct: 85 HLAAIRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQKL 135
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 197 DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256
DG T LH A E+++ L + + D +G TPLH AA G ++LL H
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKY---GADVNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 169 LYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLT 227
L AAA G V+ V ++L + P GKTAL ++ P ++ L ++ +
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELL----KQGASP 69
Query: 228 AVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMT-ALHLAAASGHIMVVD 286
V+D G +P+H AA +G T K+L++H A + D + +HLA GH VV
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEH---GADVNALDSTGSLPIHLAIREGHSSVVS 126
Query: 287 RILSSCD 293
+ D
Sbjct: 127 FLAPESD 133
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 32/133 (24%)
Query: 4 KLFEAAAKGDIEPFREIARDELESIVTDLMN-------NTVLYGN-ITASHLTLQTEEGE 55
+L AAA+GD++ R + EL + D +N +++G+ A L Q
Sbjct: 13 RLSGAAARGDVQEVRRLLHREL--VHPDALNRFGKTALQVMMFGSPAVALELLKQGASPN 70
Query: 56 IVSVS----------TKF-------VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIV 98
+ S T F VEH D++ D+ G P+HLA ++G +++V
Sbjct: 71 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVN-----ALDSTGSLPIHLAIREGHSSVV 125
Query: 99 KFLIKFAKKQPRD 111
FL + RD
Sbjct: 126 SFLAPESDLHHRD 138
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 169 LYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLT 227
L AAA G V+ V ++L + P GKTAL ++ P ++ L ++ +
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELL----KQGASP 67
Query: 228 AVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMT-ALHLAAASGHIMVVD 286
V+D G +P+H AA +G T K+L++H A + D + +HLA GH VV
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEH---GADVNALDSTGSLPIHLAIREGHSSVVS 124
Query: 287 RILSSCD 293
+ D
Sbjct: 125 FLAPESD 131
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 32/133 (24%)
Query: 4 KLFEAAAKGDIEPFREIARDELESIVTDLMN-------NTVLYGN-ITASHLTLQTEEGE 55
+L AAA+GD++ R + EL + D +N +++G+ A L Q
Sbjct: 11 RLSGAAARGDVQEVRRLLHREL--VHPDALNRFGKTALQVMMFGSPAVALELLKQGASPN 68
Query: 56 IVSVS----------TKF-------VEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIV 98
+ S T F VEH D++ D+ G P+HLA ++G +++V
Sbjct: 69 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVN-----ALDSTGSLPIHLAIREGHSSVV 123
Query: 99 KFLIKFAKKQPRD 111
FL + RD
Sbjct: 124 SFLAPESDLHHRD 136
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 25/206 (12%)
Query: 52 EEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRD 111
EE + +V + F+ S+ Q D G++ LHLAA+ + K L++ +
Sbjct: 31 EEEDAPAVISDFIYQ----GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA--- 83
Query: 112 LQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYM 171
+ + TPLH AV + V +ILI + + TPL +
Sbjct: 84 -------------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 130
Query: 172 AAANGSVEIVAKILQKCPSPAHEGPD-GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVR 230
AA +VE + + L + + D GK+ALH A + L + + + R
Sbjct: 131 AA-RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDH 256
++ TPL AA G T+K+LLDH
Sbjct: 190 EE---TPLFLAAREGSYETAKVLLDH 212
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 25/206 (12%)
Query: 52 EEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRD 111
EE + +V + F+ S+ Q D G++ LHLAA+ + K L++ +
Sbjct: 32 EEEDAPAVISDFIYQ----GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA--- 84
Query: 112 LQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYM 171
+ + TPLH AV + V +ILI + + TPL +
Sbjct: 85 -------------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 131
Query: 172 AAANGSVEIVAKILQKCPSPAHEGPD-GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVR 230
AA +VE + + L + + D GK+ALH A + L + + + R
Sbjct: 132 AA-RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 190
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDH 256
++ TPL AA G T+K+LLDH
Sbjct: 191 EE---TPLFLAAREGSYETAKVLLDH 213
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 28/114 (24%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAAK+G IV+ L+K G R + G TPLH A
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLK----------HGADVNARDIWG------RTPLHLA 87
Query: 139 VRLRSVDVAKILIVADPHVPYSANRN-----NETPLYMAAANGSVEIVAKILQK 187
+ +++ ++L+ Y A+ N +T ++ NG+ E +A+ILQK
Sbjct: 88 ATVGHLEIVEVLL------EYGADVNAQDKFGKTAFDISIDNGN-EDLAEILQK 134
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDH--DKSAAFIGGKDRNMTALHLAAASGHIMVVDRI 288
D G TPLH AA G ++LL H D +A I G+ T LHLAA GH+ +V+ +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR----TPLHLAATVGHLEIVEVL 99
Query: 289 LS 290
L
Sbjct: 100 LE 101
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRN-----NETPLYMAAANGSVEIVAKILQK 187
TPLH A + +++ ++L+ + A+ N TPL++AA G +EIV +L+
Sbjct: 49 TPLHLAAKRGHLEIVEVLL------KHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 188 CPSPAHEGPDGKTALHAAV 206
+ GKTA ++
Sbjct: 103 GADVNAQDKFGKTAFDISI 121
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 167 TPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSL 226
L AAA G +E + +LQ + + G+TAL P E+ ++L L L
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRGANPDL 65
Query: 227 TAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD 286
+D+ G+ +H AA +G T + LL+ ++ I + N+ LHLAA GH+ VV+
Sbjct: 66 ---KDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVE 120
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
Query: 76 FQADA-----KGDSPLHLAAKKGDAAIVKFLIK 103
FQAD +G+ PLHLAAK+G +V+FL+K
Sbjct: 92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 167 TPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSL 226
L AAA G +E + +LQ + + G+TAL P E+ ++L L L
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRGANPDL 65
Query: 227 TAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD 286
+D+ G+ +H AA +G T + LL+ ++ I + N+ LHLAA GH+ VV+
Sbjct: 66 ---KDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVE 120
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
Query: 76 FQADA-----KGDSPLHLAAKKGDAAIVKFLIK 103
FQAD +G+ PLHLAAK+G +V+FL+K
Sbjct: 92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 21/124 (16%)
Query: 83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLR 142
D A K GD VK + + R L+ G K PLH A
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRK----------------PLHYAADCG 51
Query: 143 SVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKT 200
+++ + L++ AD + P ++++ TPL A G V V +L K +GPDG T
Sbjct: 52 QLEILEFLLLKGADINAP---DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Query: 201 ALHA 204
A A
Sbjct: 109 AFEA 112
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA R D +IL+ V + ++N TPL++AA NG +E+V +L+ +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 195 GPDGKTALHAAV 206
GKTA ++
Sbjct: 87 DKFGKTAFDISI 98
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 188 CPSPAHEGPD-GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR 246
P +H G D GK L AA EV ++ + + A +DK G TPLH AA +G
Sbjct: 14 VPRGSHMGSDLGKKLLEAARAGQDDEV--RILM--ANGADVAAKDKNGSTPLHLAARNGH 69
Query: 247 ELTSKLLLD 255
KLLL+
Sbjct: 70 LEVVKLLLE 78
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSS 291
L AA +G++ ++L+ + A + KD+N T LHLAA +GH+ VV +L +
Sbjct: 28 LLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIK 103
D G +PLHLAA+ G +VK L++
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLE 78
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 1 MDRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVS 60
+D L EAA +G++ RE + + D +T LY H
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGH-------------- 118
Query: 61 TKFVEHILDLSPSV-LFQADAKGDSPLHLAAKKGDAAIVKFLI-KFAKKQPRDLQR 114
K + L P++ L Q + GD+ LH AA KG A IV+ L+ K A+ R++++
Sbjct: 119 -KDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK 173
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 129 EEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA-NRNNETPLYMAAANGSVEIVAKIL-Q 186
E + PLHEA + ++ + + D V + ++ T LY A G +IV + Q
Sbjct: 71 ESIDNPLHEAAKRGNLSWLRECL--DNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ 128
Query: 187 KCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA 242
+ G TALHAA + ++++ L + L + K + +AA
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAA 184
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC- 188
E NTPL+ AV +++AK LI + N +++P A A G EI+A +L+
Sbjct: 38 EGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGAQGRTEILAYMLKHAT 96
Query: 189 PSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA--YSGR 246
P G AL A + +K L E+ R ++ +G+T L A G
Sbjct: 97 PDLNKHNRYGGNALIPAAEKGHIDNVKLLL--EDGREDIDFQNDFGYTALIEAVGLREGN 154
Query: 247 ELTS---KLLLDH--DKSAAFIGGKDRNMTALHLAAASGHIMV 284
+L KLL+++ D+S G+ TA+ A G+ +
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGR----TAMDYANQKGYTEI 193
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 21/185 (11%)
Query: 73 SVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQN 132
S+ Q D G++ LHLAA+ + K L++ + + +
Sbjct: 16 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA----------------NIQDNMGR 59
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
TPLH AV + V +ILI + + TPL +AA +VE + + L +
Sbjct: 60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADV 118
Query: 193 HEGPD-GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
+ D GK+ALH A + L + + + R++ TPL AA G T+K
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE---TPLFLAAREGSYETAK 175
Query: 252 LLLDH 256
+LLDH
Sbjct: 176 VLLDH 180
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 134 PLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH 193
L EA R D +IL+ V + ++N TPL++AA NG +E+V +L+
Sbjct: 9 KLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNA 67
Query: 194 EGPDGKTALHAAV 206
+ GKTA ++
Sbjct: 68 QDKFGKTAFDISI 80
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 193 HEGPD-GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251
H G D GK L AA EV ++ + + A +DK G TPLH AA +G K
Sbjct: 1 HMGSDLGKKLLEAARAGQDDEV--RILM--ANGADVAAKDKNGSTPLHLAARNGHLEVVK 56
Query: 252 LLLD 255
LLL+
Sbjct: 57 LLLE 60
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 237 PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSS 291
L AA +G++ ++L+ + A + KD+N T LHLAA +GH+ VV +L +
Sbjct: 9 KLLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIK 103
D G +PLHLAA+ G +VK L++
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLE 60
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDH--DKSAAFIGGKDRNMTALHLAAASGHIMVVDRI 288
D G TPLH AA G ++LL H D +A+ I G+ T LHLAA GH+ +V+ +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR----TPLHLAATVGHLEIVEVL 99
Query: 289 LS 290
L
Sbjct: 100 LE 101
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 28/114 (24%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAAK+G IV+ L+K G + G TPLH A
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLK----------HGADVNASDIWG------RTPLHLA 87
Query: 139 VRLRSVDVAKILIVADPHVPYSANRN-----NETPLYMAAANGSVEIVAKILQK 187
+ +++ ++L+ Y A+ N +T ++ NG+ E +A+ILQK
Sbjct: 88 ATVGHLEIVEVLL------EYGADVNAQDKFGKTAFDISIDNGN-EDLAEILQK 134
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
TPLH A + +++ ++L+ V S + TPL++AA G +EIV +L+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 193 HEGPDGKTALHAAV 206
+ GKTA ++
Sbjct: 108 AQDKFGKTAFDISI 121
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTK 62
+KL EA G + R + + + N + +T HL + EIV V
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADV-------NAMDDAGVTPLHLAAKRGHLEIVEV--- 65
Query: 63 FVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFA 105
++H D++ S ++ G +PLHLAA G IV+ L+++
Sbjct: 66 LLKHGADVNASDIW-----GRTPLHLAATVGHLEIVEVLLEYG 103
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 167 TPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSL 226
L AAA G +E + +LQ + + G+TAL P E+ ++L L L
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRGANPDL 65
Query: 227 TAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD 286
+D+ G +H AA +G T + LL+ ++ I + N+ LHLAA GH+ VV+
Sbjct: 66 ---KDRTGNAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVE 120
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
Query: 76 FQADA-----KGDSPLHLAAKKGDAAIVKFLIK 103
FQAD +G+ PLHLAAK+G +V+FL+K
Sbjct: 92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 28/114 (24%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEA 138
D G +PLHLAAK+G IV+ L+K + ++ TPLH A
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD----------------VNASDSWGRTPLHLA 87
Query: 139 VRLRSVDVAKILIVADPHVPYSANRN-----NETPLYMAAANGSVEIVAKILQK 187
+ +++ ++L+ Y A+ N +T ++ NG+ E +A+ILQK
Sbjct: 88 ATVGHLEIVEVLL------EYGADVNAQDKFGKTAFDISIDNGN-EDLAEILQK 134
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDH--DKSAAFIGGKDRNMTALHLAAASGHIMVVDRI 288
D G TPLH AA G ++LL H D +A+ G+ T LHLAA GH+ +V+ +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR----TPLHLAATVGHLEIVEVL 99
Query: 289 L 289
L
Sbjct: 100 L 100
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 133 TPLHEAVRLRSVDVAKILIV--ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS 190
TPLH A + +++ ++L+ AD + S R TPL++AA G +EIV +L+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR---TPLHLAATVGHLEIVEVLLEYGAD 105
Query: 191 PAHEGPDGKTALHAAV 206
+ GKTA ++
Sbjct: 106 VNAQDKFGKTAFDISI 121
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 14 IEPFREIARDELESIVTDLMN-NTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSP 72
+E R DE+ ++ + + N + +T HL + EIV V ++H D++
Sbjct: 19 LEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEV---LLKHGADVNA 75
Query: 73 SVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFA 105
S D+ G +PLHLAA G IV+ L+++
Sbjct: 76 S-----DSWGRTPLHLAATVGHLEIVEVLLEYG 103
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 86/220 (39%), Gaps = 46/220 (20%)
Query: 83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGV------------KSAERQML------ 124
+SPL LAAK+ D + L+KF + QRG + E M+
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVH--QRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 125 -----GMTNE--EQNTPLHEAVRLRSVDVAKILIVADPHV------------PYSANRNN 165
MT+E E T LH AV ++V++ + L+ V P++
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121
Query: 166 ETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY----TYPTEVIKQLFLH- 220
E PL AA GS EIV +++ + G T LH + T+ ++ L +
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD 181
Query: 221 --EEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDK 258
+ +SL V + G TP A G + + L+ K
Sbjct: 182 GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 85/206 (41%), Gaps = 25/206 (12%)
Query: 52 EEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRD 111
EE + +V + F+ S+ Q D G + LHLAA + K L++ +
Sbjct: 31 EEEDAPAVISDFIYQ----GASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADA--- 83
Query: 112 LQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYM 171
+ + TPLH AV + V +ILI + + TPL +
Sbjct: 84 -------------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 130
Query: 172 AAANGSVEIVAKILQKCPSPAHEGPD-GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVR 230
AA +VE + + L + + D GK+ALH A + L + + + R
Sbjct: 131 AA-RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDH 256
++ TPL AA G T+K+LLDH
Sbjct: 190 EE---TPLFLAAREGSYETAKVLLDH 212
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 77/202 (38%), Gaps = 37/202 (18%)
Query: 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
G + LHLAA G+A+ V+ L GV AER +T LH A R+
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGA--------GVLVAERG--------GHTALHLACRV 88
Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP----- 196
R+ A +L+ P P A+ T + S A Q P+P +E
Sbjct: 89 RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ--PNPENEEEPRDED 146
Query: 197 ----------DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR 246
DG T LH AV E+++ L + L G TPLH A +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVR--LLRDAGADLNKPEPTCGRTPLHLAVEAQA 204
Query: 247 ELTSKLLLD--HDKSAAFIGGK 266
+LLL D +A GG+
Sbjct: 205 ASVLELLLKAGADPTARMYGGR 226
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 77/202 (38%), Gaps = 37/202 (18%)
Query: 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
G + LHLAA G+A+ V+ L GV AER +T LH A R+
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGA--------GVLVAERG--------GHTALHLACRV 88
Query: 142 RSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP----- 196
R+ A +L+ P P A+ T + S A Q P+P +E
Sbjct: 89 RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ--PNPENEEEPRDED 146
Query: 197 ----------DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR 246
DG T LH AV E+++ L + L G TPLH A +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVR--LLRDAGADLNKPEPTCGRTPLHLAVEAQA 204
Query: 247 ELTSKLLLD--HDKSAAFIGGK 266
+LLL D +A GG+
Sbjct: 205 ASVLELLLKAGADPTARMYGGR 226
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 28/121 (23%)
Query: 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
G+ PL LAA +V +L++ QP LQ T+ + NT LH V +
Sbjct: 141 GELPLSLAACTKQWDVVSYLLE-NPHQPASLQ------------ATDSQGNTVLHALVXI 187
Query: 142 RSVDVAKILIVAD-------------PHVPYSANRN--NETPLYMAAANGSVEIVAKILQ 186
I +V P V RN + TPL +AA G +EI ILQ
Sbjct: 188 SDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQ 247
Query: 187 K 187
+
Sbjct: 248 R 248
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 25/187 (13%)
Query: 73 SVLFQADAKGDSPLHLAAK--KGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEE 130
S+ Q D G++ LHLAA+ + DAA R L+ + + +G
Sbjct: 13 SLHNQTDRTGETALHLAARYSRSDAA------------KRLLEASADAXIQDNMG----- 55
Query: 131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS 190
TPLH AV + V +IL+ + + TPL +AA ++E + + L +
Sbjct: 56 -RTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAA-RLALEGMLEDLINSHA 113
Query: 191 PAHEGPD-GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELT 249
+ D GK+ALH A + L + + + +++ TPL AA G T
Sbjct: 114 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEE---TPLFLAAREGSYET 170
Query: 250 SKLLLDH 256
+K+LLDH
Sbjct: 171 AKVLLDH 177
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP 189
E PLH+A L + KIL+ + ++ N T LY A +G+ + V ++K
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGN-TALYYAVDSGNXQTVKLFVKKNW 119
Query: 190 SPAHEGPDG-KTALHAAVYTYPTEVIKQLFLHE 221
G G KT+ + AV ++ FL E
Sbjct: 120 RLXFYGKTGWKTSFYHAVXLNDVSIV-SYFLSE 151
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 24/173 (13%)
Query: 84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS 143
SPLH A G + VK L+K Q+ G+T + +TPL A S
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGA---------------QVNGVT-ADWHTPLFNACVSGS 81
Query: 144 VDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALH 203
D +L+ V ++ +P++ AA G VE V ++ + H+ T L+
Sbjct: 82 WDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY 139
Query: 204 AAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGW-TPLHHAAYSGRELTSKLLLD 255
A +K+L S V G +PLH A + E + LL+D
Sbjct: 140 LACENQQRACVKKLL-----ESGADVNQGKGQDSPLHAVARTASEELACLLMD 187
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 235 WTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRIL 289
W+P+H AA G +L+ + L+ + I +++ LH A GH+ V +L
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITAD--HVSPLHEACLGGHLSCVKILL 56
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 171 MAAANGSVEIVAKILQKCPSPAHEGPDGKTALH-AAVYTY--PTEVIKQLFLHEEKRSLT 227
+ AA + +IL +P G + LH AA Y + TEV+ + + + R+
Sbjct: 7 LEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART-- 64
Query: 228 AVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVD 286
K TPLH AA G ++LL H A + KD MTALH A H VV+
Sbjct: 65 ----KVDRTPLHMAASEGHANIVEVLLKH---GADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 287 RIL 289
++
Sbjct: 118 LLI 120
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRS 143
+PLH+AA +G A IV+ L+K G + ML M T LH A
Sbjct: 69 TPLHMAASEGHANIVEVLLK----------HGADVNAKDMLKM------TALHWATEHNH 112
Query: 144 VDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQ 186
+V ++LI V ++ ++ +T ++ NG+ E +A+ILQ
Sbjct: 113 QEVVELLIKYGADV-HTQSKFCKTAFDISIDNGN-EDLAEILQ 153
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS 290
D G +PLH AA G T+++LL S DR T LH+AA+ GH +V+ +L
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVLLK 88
Query: 291 SCDGCCAKVDERGWNFLHFA 310
AK D LH+A
Sbjct: 89 HGADVNAK-DMLKMTALHWA 107
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSA-NRNNETPLYMAAANGSVEIVAKILQKCPSP 191
+PLH A + ++L+ A V A + + TPL+MAA+ G IV +L+
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 192 AHEGPDGKTALHAAVYTYPTEVIKQLF 218
+ TALH A EV++ L
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLI 120
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 84 SPLHLAAKKGDAAIVKFLIKFAKK-------QPRDLQRGVKSAERQMLGM---------T 127
SPLH A G + VK L+K + L S + +
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNE-----TPLYMAAANGSVEIVA 182
+ +P+HEA R V+ LI Y N +++ TPLY+A N V
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIA------YGGNIDHKISHLGTPLYLACENQQRACVK 207
Query: 183 KILQKCPSPAHEGPDGKTALHAAVYTYPTEV 213
K+L+ + ++G + LHA V T E+
Sbjct: 208 KLLES-GADVNQGKGQDSPLHAVVRTASEEL 237
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 235 WTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRIL 289
W+P+H AA G +L+ + L+ + I +++ LH A GH+ V +L
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITAD--HVSPLHEACLGGHLSCVKILL 112
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 135 LHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE 194
L EA R D +IL+ V + +++ TPL++AA G +EIV +L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 195 GPDGKTALHAAV 206
GKTA ++
Sbjct: 65 DKFGKTAFDISI 76
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 79 DAKGDSPLHLAAKKGDAAIVKFLIK 103
D G +PLHLAA++G IV+ L+K
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLK 56
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRN-MTALHLAAASGHIMVVDRILSS 291
L AA +G++ ++L+ + A + KD++ T LHLAA GH+ +V+ +L +
Sbjct: 6 LLEAARAGQDDEVRILM---ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 57
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 230 RDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDR-NMTALHLAAASGHIMVVDRI 288
DK G TPLH AA + ++LL K+ A + D T LHL A GH+ +V+ +
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLL---KNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 289 L 289
L
Sbjct: 100 L 100
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPA 192
TPLH A +++ ++L+ V + + ETPL++ A G +EIV +L+
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 193 HEGPDGKTALHAAV 206
+ GKTA ++
Sbjct: 108 AQDKFGKTAFDISI 121
>pdb|2LPM|A Chain A, Chemical Shift And Structure Assignments For Sma0114
Length = 123
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 326 HPTVRNSRLLIAEDVNGNTPLHVVAAVCRLSHRVAGLPQEIQELSKNVGRGQYPNGILRV 385
H T R R+L+ ED + + +C L H VA +QE +GQ+ I+ V
Sbjct: 3 HMTERRLRVLVVED-ESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDV 61
Query: 386 Q 386
Sbjct: 62 N 62
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
G+ PL LAA +V +L++ QP L+ + + N+P + A+ +
Sbjct: 136 GELPLSLAACTKQWDVVTYLLE-NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVI 194
Query: 142 RSVD-VAKILIVADPHVPYS--ANRNNETPLYMAAANGSVEIVAKILQK 187
D + ++ P V +N TPL +AA G +EI ILQ+
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 262 FIGGKDRNMTALHLAAASGHI---MVVDRILSSCDGCCAKVD 300
F KD N LHL GH+ V R L++C+G +D
Sbjct: 64 FYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLID 105
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 262 FIGGKDRNMTALHLAAASGHI---MVVDRILSSCDGCCAKVD 300
F KD N LHL GH+ V R L++C+G +D
Sbjct: 64 FYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLID 105
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMT----NEEQNTPL-H 136
G+ PL LAA IV +L + KQ DL+R + + N +NT
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQA-DLRRQDSRGNTVLHALVAIADNTRENTKFVT 198
Query: 137 EAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK 187
+ L + AK+ D ++ N + +PL MAA G + I I+++
Sbjct: 199 KMYDLLLIKCAKLF--PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 144 VDVAKILIVADPHVPYSANRNNETPLYMAAAN---GSVEIVAKILQKCPSPAHEGPDGKT 200
VD+ + + +A+ H P +ET L++A + S+ IV ++Q + + G T
Sbjct: 154 VDLTEKIPLANGHEP------DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGST 207
Query: 201 ALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLL 253
ALH T E +K L ++ + ++ G TPL A E +LL
Sbjct: 208 ALHYCCLTDNAECLKLLL---RGKASIEIANESGETPLDIAKRLKHEHCEELL 257
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL 141
G+ PL LAA +V +L++ QP L+ + + N+P + A+ +
Sbjct: 149 GELPLSLAACTKQWDVVTYLLE-NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVI 207
Query: 142 RSVD-VAKILIVADPHVPYS--ANRNNETPLYMAAANGSVEIVAKILQK 187
D + ++ P V +N TPL +AA G +EI ILQ+
Sbjct: 208 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 256
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 18/154 (11%)
Query: 79 DAKGDSPLHLAAKKG-DAAIVKFLIKFAKKQPRDLQRG---VKSAERQMLGMTNE----- 129
D+ +PL +A G + AI K + F K + +D++ + + + LG+ +
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91
Query: 130 --------EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIV 181
TPL ++ +++ L+ +V N ETPL +A+ G EIV
Sbjct: 92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIV 150
Query: 182 AKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIK 215
K+L+ + G TA +A EVIK
Sbjct: 151 KKLLELGADISARDLTGLTAEASARIFGRQEVIK 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,218,142
Number of Sequences: 62578
Number of extensions: 606696
Number of successful extensions: 2429
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1574
Number of HSP's gapped (non-prelim): 430
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)