Query 008977
Match_columns 547
No_of_seqs 427 out of 4143
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 16:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 7.4E-47 2.5E-51 389.9 25.2 323 2-352 15-354 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.6E-46 5.6E-51 387.4 26.8 325 2-354 48-389 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 3.6E-40 1.2E-44 327.9 22.9 288 2-337 26-329 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 2.2E-40 7.5E-45 331.0 19.8 289 19-350 9-321 (351)
5 1wdy_A 2-5A-dependent ribonucl 100.0 5E-40 1.7E-44 318.3 20.3 260 46-340 10-284 (285)
6 1wdy_A 2-5A-dependent ribonucl 100.0 2.8E-39 9.5E-44 313.0 24.6 259 2-296 6-280 (285)
7 2fo1_E LIN-12 protein; beta-ba 100.0 1.4E-40 4.8E-45 335.2 12.5 303 2-354 38-358 (373)
8 2xai_A ASB-9, ankyrin repeat a 100.0 1.4E-39 4.8E-44 311.3 18.4 244 81-352 2-248 (261)
9 3utm_A Tankyrase-1; tankyrase, 100.0 4.2E-39 1.4E-43 321.6 22.2 300 3-353 26-350 (351)
10 4g8k_A 2-5A-dependent ribonucl 100.0 1.5E-38 5.2E-43 316.1 22.0 274 33-353 24-312 (337)
11 3d9h_A CDNA FLJ77766, highly s 100.0 1.4E-38 4.8E-43 308.3 19.2 245 33-313 14-265 (285)
12 1oy3_D Transcription factor in 100.0 4.1E-38 1.4E-42 304.6 18.9 254 75-352 2-268 (282)
13 1yyh_A HN1;, notch 1, ankyrin 100.0 1E-37 3.6E-42 296.9 20.1 236 25-295 1-249 (253)
14 2fo1_E LIN-12 protein; beta-ba 100.0 8.8E-38 3E-42 314.7 18.0 258 2-294 95-371 (373)
15 2xai_A ASB-9, ankyrin repeat a 100.0 3.7E-38 1.3E-42 301.5 14.5 241 41-315 3-250 (261)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 2.6E-37 8.9E-42 294.2 18.9 224 74-319 2-239 (253)
17 3d9h_A CDNA FLJ77766, highly s 100.0 1.3E-37 4.4E-42 301.5 17.0 251 2-293 16-277 (285)
18 3b7b_A Euchromatic histone-lys 100.0 2.3E-36 8E-41 284.6 22.9 220 74-316 3-223 (237)
19 3ljn_A Hypothetical protein; a 100.0 9E-38 3.1E-42 314.0 11.7 274 3-297 22-317 (364)
20 3ljn_A Hypothetical protein; a 100.0 6E-38 2.1E-42 315.3 9.7 256 25-315 11-301 (364)
21 1k1a_A B-cell lymphoma 3-encod 100.0 4.1E-37 1.4E-41 290.4 14.2 224 75-317 2-230 (241)
22 1k1a_A B-cell lymphoma 3-encod 100.0 2.7E-36 9.3E-41 284.8 19.6 223 124-355 2-229 (241)
23 4b93_B Ankyrin repeat domain-c 100.0 5.9E-37 2E-41 293.6 12.7 224 77-315 6-230 (269)
24 3b7b_A Euchromatic histone-lys 100.0 7E-36 2.4E-40 281.3 18.4 231 25-291 2-232 (237)
25 3aji_A 26S proteasome non-ATPa 100.0 5.3E-36 1.8E-40 280.9 16.8 215 80-316 4-218 (231)
26 3aji_A 26S proteasome non-ATPa 100.0 1.7E-35 5.7E-40 277.6 20.2 215 128-354 3-217 (231)
27 2dzn_A Probable 26S proteasome 100.0 3.9E-35 1.3E-39 274.4 20.2 211 82-313 2-218 (228)
28 2f8y_A Notch homolog 1, transl 100.0 4E-34 1.4E-38 266.6 22.1 216 54-295 2-217 (223)
29 1s70_B 130 kDa myosin-binding 100.0 3.2E-35 1.1E-39 287.0 15.3 239 78-351 36-274 (299)
30 3eu9_A Huntingtin-interacting 100.0 2.2E-34 7.5E-39 271.2 20.4 221 76-317 3-224 (240)
31 4b93_B Ankyrin repeat domain-c 100.0 3.7E-35 1.3E-39 281.1 14.5 209 3-246 13-230 (269)
32 2dzn_A Probable 26S proteasome 100.0 1.6E-34 5.3E-39 270.3 18.1 213 131-352 2-218 (228)
33 1oy3_D Transcription factor in 100.0 1.2E-34 4.1E-39 280.2 16.7 255 28-316 3-271 (282)
34 3kea_A K1L; tropism, ANK repea 100.0 1E-34 3.6E-39 281.0 13.3 211 11-260 9-221 (285)
35 3eu9_A Huntingtin-interacting 100.0 1.3E-33 4.3E-38 266.0 19.3 230 30-295 5-236 (240)
36 1sw6_A Regulatory protein SWI6 100.0 3.2E-35 1.1E-39 290.4 7.6 269 54-352 30-326 (327)
37 1s70_B 130 kDa myosin-binding 100.0 8.4E-35 2.9E-39 284.0 7.4 269 7-313 4-275 (299)
38 2f8y_A Notch homolog 1, transl 100.0 1.7E-33 5.8E-38 262.4 15.5 216 11-260 1-217 (223)
39 3kea_A K1L; tropism, ANK repea 100.0 1.2E-33 4.2E-38 273.5 14.3 226 74-339 23-251 (285)
40 2rfa_A Transient receptor pote 100.0 1.6E-32 5.3E-37 257.5 19.1 196 81-295 2-223 (232)
41 1ikn_D Protein (I-kappa-B-alph 100.0 1.3E-33 4.6E-38 265.5 9.3 217 77-311 3-227 (236)
42 1sw6_A Regulatory protein SWI6 100.0 1.2E-34 3.9E-39 286.4 2.0 259 11-314 29-327 (327)
43 1ikn_D Protein (I-kappa-B-alph 100.0 4.2E-33 1.4E-37 262.2 10.7 219 29-277 3-227 (236)
44 2pnn_A Transient receptor pote 100.0 1.1E-32 3.8E-37 265.3 13.1 226 74-307 5-271 (273)
45 3hra_A Ankyrin repeat family p 100.0 2.7E-31 9.3E-36 243.2 21.2 194 79-292 2-201 (201)
46 2etb_A Transient receptor pote 100.0 6.8E-32 2.3E-36 257.2 13.6 199 81-295 1-247 (256)
47 2rfa_A Transient receptor pote 100.0 1.8E-31 6.2E-36 250.2 15.9 202 42-261 4-224 (232)
48 2etb_A Transient receptor pote 100.0 1.1E-31 3.8E-36 255.7 13.6 209 42-260 3-247 (256)
49 2pnn_A Transient receptor pote 100.0 2.7E-31 9.1E-36 255.6 16.1 214 25-259 4-258 (273)
50 3hra_A Ankyrin repeat family p 100.0 7.8E-31 2.7E-35 240.1 17.1 189 43-257 7-201 (201)
51 4gpm_A Engineered protein OR26 100.0 2.2E-30 7.4E-35 229.2 18.5 158 84-261 6-163 (169)
52 4gpm_A Engineered protein OR26 100.0 6.7E-31 2.3E-35 232.5 12.0 160 2-193 5-164 (169)
53 3jxi_A Vanilloid receptor-rela 100.0 7.8E-31 2.7E-35 250.4 12.4 205 79-295 2-251 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 5.1E-30 1.7E-34 244.8 12.9 209 43-261 7-252 (260)
55 2rfm_A Putative ankyrin repeat 100.0 2.6E-28 9E-33 221.6 16.9 164 74-257 27-190 (192)
56 4hbd_A KN motif and ankyrin re 100.0 1.4E-28 4.7E-33 236.7 15.7 195 80-293 74-274 (276)
57 4hbd_A KN motif and ankyrin re 100.0 9.3E-29 3.2E-33 237.9 11.5 191 43-257 78-273 (276)
58 2rfm_A Putative ankyrin repeat 100.0 1.3E-27 4.4E-32 217.0 17.1 165 122-292 26-190 (192)
59 2vge_A RELA-associated inhibit 100.0 2.6E-30 9E-35 241.3 -0.9 191 74-287 13-206 (229)
60 3v30_A DNA-binding protein rfx 100.0 6.6E-28 2.2E-32 214.8 14.7 159 83-260 3-161 (172)
61 1ihb_A P18-INK4C(INK6), cyclin 100.0 5.9E-28 2E-32 212.8 14.1 157 82-258 5-161 (162)
62 3v31_A Ankyrin repeat family A 100.0 1.6E-27 5.5E-32 211.2 15.8 157 81-257 2-158 (167)
63 3v30_A DNA-binding protein rfx 99.9 1.7E-27 5.7E-32 212.2 15.7 170 131-306 2-171 (172)
64 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.8E-27 1.3E-31 209.2 17.5 159 79-257 11-169 (169)
65 3v31_A Ankyrin repeat family A 99.9 4.4E-27 1.5E-31 208.3 16.6 161 130-296 2-162 (167)
66 2aja_A Ankyrin repeat family p 99.9 1.4E-30 4.6E-35 259.8 -8.5 239 78-355 88-362 (376)
67 1ihb_A P18-INK4C(INK6), cyclin 99.9 5.1E-27 1.7E-31 206.8 14.5 159 129-294 3-162 (162)
68 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.8E-26 6.3E-31 204.8 16.8 160 127-292 10-169 (169)
69 1awc_B Protein (GA binding pro 99.9 3E-26 1E-30 199.9 16.7 150 83-253 3-152 (153)
70 3twr_A Tankyrase-2; ankyrin re 99.9 8E-27 2.7E-31 206.2 13.3 161 78-258 4-164 (165)
71 2vge_A RELA-associated inhibit 99.9 5.3E-29 1.8E-33 232.4 -1.0 129 128-260 18-149 (229)
72 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.4E-26 8.3E-31 201.1 16.1 154 82-256 2-155 (156)
73 3f6q_A Integrin-linked protein 99.9 2.5E-26 8.6E-31 206.0 15.2 166 80-264 3-168 (179)
74 2aja_A Ankyrin repeat family p 99.9 8.9E-29 3E-33 246.7 -1.9 260 5-317 69-363 (376)
75 1awc_B Protein (GA binding pro 99.9 5.6E-26 1.9E-30 198.1 15.7 151 131-288 2-152 (153)
76 3twr_A Tankyrase-2; ankyrin re 99.9 2E-26 7E-31 203.6 12.0 161 127-293 4-164 (165)
77 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.2E-27 1.1E-31 222.2 4.8 209 128-350 2-226 (239)
78 3f6q_A Integrin-linked protein 99.9 1.2E-25 4E-30 201.6 14.5 164 129-297 3-166 (179)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.4E-25 8.3E-30 194.7 15.4 154 131-291 2-155 (156)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.5E-26 2.2E-30 213.3 9.1 126 130-259 36-164 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 2.4E-24 8.1E-29 183.7 12.4 131 72-220 2-133 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 7.3E-24 2.5E-28 185.3 11.1 142 77-239 7-149 (156)
83 1d9s_A Cyclin-dependent kinase 99.9 1.4E-23 4.9E-28 178.8 10.7 130 124-258 5-135 (136)
84 3deo_A Signal recognition part 99.9 1.2E-23 4.2E-28 189.1 10.3 142 78-256 40-181 (183)
85 3ui2_A Signal recognition part 99.9 2E-23 6.9E-28 196.8 11.7 163 46-256 20-182 (244)
86 3t8k_A Uncharacterized protein 99.9 8.6E-24 2.9E-28 190.0 8.7 153 82-255 6-175 (186)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 7.7E-23 2.6E-27 174.3 13.4 125 78-219 10-134 (136)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.2E-22 7.5E-27 168.7 15.5 123 81-220 1-123 (126)
89 1bi7_B P16INK4A, MTS1, multipl 99.9 3.6E-23 1.2E-27 180.8 10.6 143 125-274 6-149 (156)
90 3t8k_A Uncharacterized protein 99.9 4.4E-23 1.5E-27 185.3 8.8 156 131-293 6-178 (186)
91 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.2E-22 2.8E-26 165.2 14.5 125 130-258 1-125 (126)
92 3c5r_A BARD-1, BRCA1-associate 99.9 1E-22 3.5E-27 173.8 8.0 125 77-218 5-129 (137)
93 2jab_A H10-2-G3; HER2, darpin, 99.9 4.5E-22 1.5E-26 169.5 11.8 126 128-257 11-136 (136)
94 3aaa_C Myotrophin, protein V-1 99.9 9E-22 3.1E-26 164.5 9.8 112 79-207 4-115 (123)
95 3deo_A Signal recognition part 99.9 1.2E-21 4.2E-26 175.9 10.4 140 128-291 41-181 (183)
96 2b0o_E UPLC1; arfgap, structur 99.9 3.1E-21 1.1E-25 187.2 13.3 148 80-247 149-299 (301)
97 3ehr_A Osteoclast-stimulating 99.8 8.3E-22 2.8E-26 183.0 8.4 132 76-224 67-199 (222)
98 3ui2_A Signal recognition part 99.8 1.5E-21 5E-26 184.0 10.0 143 128-294 42-185 (244)
99 3c5r_A BARD-1, BRCA1-associate 99.8 1.6E-21 5.5E-26 166.3 8.7 128 126-257 5-132 (137)
100 2b0o_E UPLC1; arfgap, structur 99.8 2.1E-20 7.1E-25 181.4 13.3 138 166-315 152-298 (301)
101 3aaa_C Myotrophin, protein V-1 99.8 1.8E-20 6.3E-25 156.4 9.2 112 128-243 4-115 (123)
102 3ehr_A Osteoclast-stimulating 99.8 1.7E-20 5.6E-25 174.2 8.7 134 126-263 68-202 (222)
103 3jue_A Arfgap with coiled-coil 99.8 6.2E-20 2.1E-24 182.1 12.9 146 81-243 198-346 (368)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.6E-19 5.5E-24 142.5 11.6 93 81-190 1-93 (93)
105 1dcq_A PYK2-associated protein 99.8 1.6E-18 5.6E-23 166.1 15.1 123 167-294 132-263 (278)
106 3lvq_E ARF-GAP with SH3 domain 99.8 1.1E-18 3.8E-23 181.7 14.3 143 81-243 131-276 (497)
107 2l6b_A NR1C; ankyrin, consensu 99.8 2.3E-19 8E-24 147.7 6.9 107 78-201 5-111 (115)
108 1dcq_A PYK2-associated protein 99.8 1.8E-18 6E-23 165.9 13.4 129 82-221 130-261 (278)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3E-18 1E-22 135.2 12.0 90 130-220 1-90 (93)
110 3lvq_E ARF-GAP with SH3 domain 99.8 2.2E-18 7.5E-23 179.5 13.3 136 132-278 133-276 (497)
111 3jue_A Arfgap with coiled-coil 99.8 1.7E-18 5.8E-23 171.8 11.3 143 165-312 199-346 (368)
112 2l6b_A NR1C; ankyrin, consensu 99.7 8E-18 2.7E-22 138.5 10.1 108 126-237 4-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 1.3E-16 4.3E-21 130.1 9.5 94 74-184 16-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 4.8E-16 1.6E-20 126.6 9.9 93 124-217 17-109 (110)
115 4ev6_A Magnesium transport pro 64.4 7.3 0.00025 37.2 5.1 28 485-512 280-311 (339)
116 2l8s_A Integrin alpha-1; trans 61.1 15 0.0005 24.1 4.4 33 510-543 7-39 (54)
117 2knc_A Integrin alpha-IIB; tra 57.3 19 0.00065 23.7 4.4 33 510-543 10-42 (54)
118 3gvo_A Pumilio 2, pumilio homo 57.1 5.4 0.00018 38.4 2.7 17 299-315 292-308 (351)
119 2jwa_A Receptor tyrosine-prote 55.5 26 0.00089 21.9 4.6 31 512-544 11-41 (44)
120 2iub_A CORA, divalent cation t 42.2 13 0.00043 36.0 2.7 28 485-512 304-335 (363)
121 2ks1_B Epidermal growth factor 42.2 25 0.00086 22.0 3.1 30 513-543 11-40 (44)
122 2l2t_A Receptor tyrosine-prote 40.8 40 0.0014 21.0 3.8 30 513-543 10-39 (44)
123 1gp8_A Protein (scaffolding pr 39.8 10 0.00035 22.6 1.0 21 2-22 14-34 (40)
124 3gvo_A Pumilio 2, pumilio homo 39.6 48 0.0017 31.6 6.4 16 337-352 291-306 (351)
125 3k49_A MRNA-binding protein PU 38.6 31 0.0011 33.2 4.9 14 300-313 310-323 (369)
126 3s8f_C Cytochrome C oxidase po 34.1 68 0.0023 18.7 3.8 22 513-534 8-29 (34)
127 3mkq_B Coatomer subunit alpha; 26.8 2.8E+02 0.0097 23.2 8.6 47 236-292 94-141 (177)
128 3rko_J NADH-quinone oxidoreduc 26.8 2.6E+02 0.0089 23.7 8.0 17 447-463 4-20 (184)
129 2k1a_A Integrin alpha-IIB; sin 26.6 1E+02 0.0035 19.0 3.9 18 510-527 8-25 (42)
130 2klu_A T-cell surface glycopro 24.8 82 0.0028 21.4 3.5 18 518-535 12-29 (70)
131 3zrh_A Ubiquitin thioesterase 22.0 1.7E+02 0.0058 28.2 6.4 60 89-152 29-90 (454)
132 3k49_A MRNA-binding protein PU 21.2 1.4E+02 0.0048 28.5 6.1 27 78-104 74-100 (369)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.4e-47 Score=389.95 Aligned_cols=323 Identities=24% Similarity=0.311 Sum_probs=200.2
Q ss_pred CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977 2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK 81 (547)
Q Consensus 2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~ 81 (547)
.++||.|+..|+.+++++|+++|.+++..+..|.|+| |+|+.. |+.++ +++|++ .+..++.+|..
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L-------~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~ 79 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPL-------HMAARA--GHTEV--AKYLLQ----NKAKVNAKAKD 79 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHH-------HHHHHH--TCHHH--HHHHHH----HTCCSSCCCTT
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHH-------HHHHHc--CCHHH--HHHHHh----CCCCCCCCCCC
Confidence 3689999999999999999999999999888888888 999999 99999 999977 46778889999
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhh-------hh----hhHHHHH------hcccccCCCCHhHHHHHcCCH
Q 008977 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQR-------GV----KSAERQM------LGMTNEEQNTPLHEAVRLRSV 144 (547)
Q Consensus 82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-------~~----~~~~~~~------l~~~~~~g~t~Lh~A~~~g~~ 144 (547)
|.||||+|+..|+.++|++|++++++....... +. ....+.+ .+..+..|.||||+|+..|+.
T Consensus 80 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~ 159 (437)
T 1n11_A 80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159 (437)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence 999999999999999999999998763210000 00 0000001 122334455555555555555
Q ss_pred HHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccc
Q 008977 145 DVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKR 224 (547)
Q Consensus 145 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~ 224 (547)
+++++|++++++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++.|++.+
T Consensus 160 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--- 235 (437)
T 1n11_A 160 RVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG--- 235 (437)
T ss_dssp HHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---
T ss_pred HHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---
Confidence 55555555555443 34445555555555555555555555555555555555555555555555555555555222
Q ss_pred hhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCC
Q 008977 225 SLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGW 304 (547)
Q Consensus 225 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 304 (547)
...+..+..|.||||+|+..|+.+++++|++++++.+... ..|.||||+|+..|+.+++++|++++.+. +.+|..|+
T Consensus 236 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~ 312 (437)
T 1n11_A 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN--KSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGY 312 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC--TTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCC
Confidence 2234445555566666666666666666665555544332 23556666666666666666666655543 33455566
Q ss_pred cHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHh
Q 008977 305 NFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV 352 (547)
Q Consensus 305 t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~ 352 (547)
||||+|+..++.+ +...+++.++++|.+|..|+||||+|++.
T Consensus 313 t~L~~A~~~g~~~------~v~~Ll~~gad~n~~~~~g~t~L~~A~~~ 354 (437)
T 1n11_A 313 TPLHVASHYGNIK------LVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354 (437)
T ss_dssp CHHHHHHHSSCSH------HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CHHHHHHHcCcHH------HHHHHHhcCCCCCCCCCCCCCHHHHHHHC
Confidence 6666666655532 22344455566666666666666666655
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-46 Score=387.36 Aligned_cols=325 Identities=24% Similarity=0.271 Sum_probs=280.0
Q ss_pred CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977 2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK 81 (547)
Q Consensus 2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~ 81 (547)
.++||.|+..|+.+++++|+++|.+++..+.+|+||| |+|+.. |+.++ +++|++ .+..++..+..
T Consensus 48 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-------~~A~~~--g~~~~--v~~Ll~----~ga~~~~~~~~ 112 (437)
T 1n11_A 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL-------HCAARI--GHTNM--VKLLLE----NNANPNLATTA 112 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH-------HHHHHH--TCHHH--HHHHHH----HTCCTTCCCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-------HHHHHC--CCHHH--HHHHHh----CCCCCCCCCCC
Confidence 3689999999999999999999999998888888888 999999 99999 999977 46677778888
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhh-------hh----hhHHHH------HhcccccCCCCHhHHHHHcCCH
Q 008977 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQR-------GV----KSAERQ------MLGMTNEEQNTPLHEAVRLRSV 144 (547)
Q Consensus 82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-------~~----~~~~~~------~l~~~~~~g~t~Lh~A~~~g~~ 144 (547)
|.||||+|+..|+.++|++|++++.+....... +. ....+. .++..+..|.||||+|+..|+.
T Consensus 113 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 192 (437)
T 1n11_A 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192 (437)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 999999999999999999999887654221110 00 011111 1466788999999999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccc
Q 008977 145 DVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKR 224 (547)
Q Consensus 145 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~ 224 (547)
+++++|++++.+.. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+..+
T Consensus 193 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--- 268 (437)
T 1n11_A 193 DIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ--- 268 (437)
T ss_dssp HHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT---
T ss_pred HHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC---
Confidence 99999999999876 67889999999999999999999999999999999999999999999999999999999543
Q ss_pred hhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCC
Q 008977 225 SLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGW 304 (547)
Q Consensus 225 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 304 (547)
...+..+..|.||||+|+..|+.+++++|+++|.+.+... ..|.||||+|+..|+.+++++|++++++. +.+|..|+
T Consensus 269 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~ 345 (437)
T 1n11_A 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT--RMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGY 345 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC--SSCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSC
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCC--CCCCCHHHHHHHcCcHHHHHHHHhcCCCC-CCCCCCCC
Confidence 4456779999999999999999999999999998876654 45999999999999999999999999886 55699999
Q ss_pred cHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhc
Q 008977 305 NFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR 354 (547)
Q Consensus 305 t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~ 354 (547)
||||+|+..++.+ +...|++.|++++.+|.+|+||||+|++.+.
T Consensus 346 t~L~~A~~~g~~~------iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~ 389 (437)
T 1n11_A 346 SPLHQAAQQGHTD------IVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 389 (437)
T ss_dssp CHHHHHHHTTCHH------HHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred CHHHHHHHCChHH------HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc
Confidence 9999999999863 4456778899999999999999999998743
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.6e-40 Score=327.86 Aligned_cols=288 Identities=18% Similarity=0.135 Sum_probs=247.7
Q ss_pred CHHHHHHHHcCCchHHHHHhhhhhhhhhccc-CCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccccccc
Q 008977 2 DRKLFEAAAKGDIEPFREIARDELESIVTDL-MNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADA 80 (547)
Q Consensus 2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~-~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~ 80 (547)
+++|+.|+++|++++|+.|+++|++++..+. .|.||| |+|+.. |+.++ +++|++ .+..++.++.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpL-------h~A~~~--g~~~i--v~~Ll~----~ga~~~~~~~ 90 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL-------HNAVQM--SREDI--VELLLR----HGADPVLRKK 90 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCT
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHH-------HHHHHc--CCHHH--HHHHHH----cCCchhhhcc
Confidence 3679999999999999999999999997764 488888 999999 99999 999977 6888889999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC-
Q 008977 81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY- 159 (547)
Q Consensus 81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~- 159 (547)
.+.+|++.++..++.+++..+++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~ 154 (337)
T 4g8k_A 91 NGATPFILAAIAGSVKLLKLFLSKGAD----------------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 154 (337)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCchhHHHHhcccchhhHHhhhccch----------------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchh
Confidence 999999999999999999999988766 667899999999999999999999999999987653
Q ss_pred --------CCCCCCCcHHHHHHHCCCHHHHHHHHH-hCCCCCCCCCCCchHHHHHHhcCC----HHHHHHHHcccccchh
Q 008977 160 --------SANRNNETPLYMAAANGSVEIVAKILQ-KCPSPAHEGPDGKTALHAAVYTYP----TEVIKQLFLHEEKRSL 226 (547)
Q Consensus 160 --------~~~~~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~~ 226 (547)
..+..|.||||+|+..|+.+++++|++ .|++++..+..|.|++|.++..+. .+++++|+++ +..
T Consensus 155 ~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~---gad 231 (337)
T 4g8k_A 155 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GAD 231 (337)
T ss_dssp CCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT---TCC
T ss_pred hccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC---CCC
Confidence 234578999999999999999999996 489999999999999998876544 3577888843 445
Q ss_pred hhhhccCCCcHHhHHHhcCChHHHHHHhcc-CCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCc
Q 008977 227 TAVRDKYGWTPLHHAAYSGRELTSKLLLDH-DKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWN 305 (547)
Q Consensus 227 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 305 (547)
++.+|..|+||||+|+..|+.++++.|++. +.+++.. +..|+||||+|++.|+.++|++|+++|++. ++.+
T Consensus 232 ~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~--d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~------n~~~ 303 (337)
T 4g8k_A 232 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT--DSDGKTALLLAVELKLKKIAELLCKRGAST------DCGD 303 (337)
T ss_dssp TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCB--CTTSCBHHHHHHHTTCHHHHHHHHTTSCSS------TTCC
T ss_pred CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCc--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------CCCC
Confidence 677899999999999999999999999985 5666554 346999999999999999999999998765 4568
Q ss_pred HHHHHHHhcCcccccceeeecccccccccccc
Q 008977 306 FLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIA 337 (547)
Q Consensus 306 ~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 337 (547)
|||+|+++++.+ +..+|+++|+++|.
T Consensus 304 ~L~~A~~~~~~~------iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 304 LVMTARRNYDHS------LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHHHTTCHH------HHHHHHHTTCCC--
T ss_pred HHHHHHHcCCHH------HHHHHHHCcCCCCC
Confidence 999999999863 44677888988875
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.2e-40 Score=330.97 Aligned_cols=289 Identities=21% Similarity=0.213 Sum_probs=247.5
Q ss_pred HHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHH
Q 008977 19 EIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIV 98 (547)
Q Consensus 19 ~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v 98 (547)
.+.+.+.+.+.++..+.++| |.|+.. |+.+. ++.+ +...+..++.+|..|.||||+|+..|+.++|
T Consensus 9 ~l~~~~~~~~~~~~~~~~~L-------~~A~~~--g~~~~--v~~l---l~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v 74 (351)
T 3utm_A 9 DLADPSAKAVLTGEYKKDEL-------LEAARS--GNEEK--LMAL---LTPLNVNCHASDGRKSTPLHLAAGYNRVRIV 74 (351)
T ss_dssp ---CHHHHHHHHHHHHHHHH-------HHHHHH--TCHHH--HHHH---CCTTTTTCCCSSTTCCCHHHHHHHTTCHHHH
T ss_pred hccCCceeeeeeccccchhH-------HHHHHc--CCHHH--HHHH---HHhcCCCcccCCCCCCCHHHHHHHcCCHHHH
Confidence 45556677777777888888 999999 99888 7777 5567888899999999999999999999999
Q ss_pred HHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCH
Q 008977 99 KFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSV 178 (547)
Q Consensus 99 ~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 178 (547)
++|++++.+ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.
T Consensus 75 ~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~ 137 (351)
T 3utm_A 75 QLLLQHGAD----------------VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRV 137 (351)
T ss_dssp HHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHcCCC----------------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCH
Confidence 999999876 56789999999999999999999999999999987 7889999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCchHHHHHHh---------------------cCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977 179 EIVAKILQKCPSPAHEGPDGKTALHAAVY---------------------TYPTEVIKQLFLHEEKRSLTAVRDKYGWTP 237 (547)
Q Consensus 179 ~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~---------------------~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp 237 (547)
+++++|+++|++++..+..|.+|+++|+. .+..+.++.++.. .......+..|.||
T Consensus 138 ~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~t~ 214 (351)
T 3utm_A 138 EVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL---EIINFKQPQSHETA 214 (351)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTT---CCTTCCCTTTCCCH
T ss_pred HHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHh---hcccccCCCCCCCH
Confidence 99999999999999999999999887644 4455555555522 12233457789999
Q ss_pred HhHHHhc---CChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhc
Q 008977 238 LHHAAYS---GRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSL 314 (547)
Q Consensus 238 Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 314 (547)
||+|+.. ++.+++++|+++|.+++..+ ..|.||||+|+..|+.+++++|++++.+. +.+|..|+||||+|+..+
T Consensus 215 L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~t~L~~A~~~~ 291 (351)
T 3utm_A 215 LHCAVASLHPKRKQVAELLLRKGANVNEKN--KDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAG 291 (351)
T ss_dssp HHHHHHCCSTTHHHHHHHHHHTTCCTTCCC--TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHhCccHHHHHHHHHHcCCCcCCcC--CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 9999999 55899999999998877654 46999999999999999999999999886 556999999999999999
Q ss_pred CcccccceeeecccccccccccccccCCCchhHHHH
Q 008977 315 DLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVA 350 (547)
Q Consensus 315 ~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~ 350 (547)
+.+ +...+++.|++++.+|.+|+||+|+|.
T Consensus 292 ~~~------~v~~Ll~~gad~~~~~~~g~tal~~a~ 321 (351)
T 3utm_A 292 HLQ------TCRLLLSYGSDPSIISLQGFTAAQMGN 321 (351)
T ss_dssp CHH------HHHHHHHTTCCTTCCCTTSCCHHHHSC
T ss_pred cHH------HHHHHHHcCCCCCCcCCCCCChhhhhh
Confidence 864 445677889999999999999999974
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5e-40 Score=318.27 Aligned_cols=260 Identities=23% Similarity=0.229 Sum_probs=227.9
Q ss_pred eeEeeecCCceecchhhHHHHHhhcCCcccccc-ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHh
Q 008977 46 HLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQA-DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQML 124 (547)
Q Consensus 46 h~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l 124 (547)
|.|+.. |+.++ +++|++ .+..++.. +..|.||||+|+..|+.+++++|++++.+ +
T Consensus 10 ~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~ 65 (285)
T 1wdy_A 10 IKAVQN--EDVDL--VQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD----------------P 65 (285)
T ss_dssp HHHHHT--TCHHH--HHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------T
T ss_pred HHHHHc--CCHHH--HHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------------C
Confidence 999999 99999 999966 44555555 88899999999999999999999998876 5
Q ss_pred cccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCC----------
Q 008977 125 GMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHE---------- 194 (547)
Q Consensus 125 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~---------- 194 (547)
+.++..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus 66 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~ 144 (285)
T 1wdy_A 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL 144 (285)
T ss_dssp TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHT
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhh
Confidence 5678899999999999999999999999999887 77889999999999999999999999999998876
Q ss_pred CCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCC----hHHHHHHhccCCCcceecCCCCCc
Q 008977 195 GPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR----ELTSKLLLDHDKSAAFIGGKDRNM 270 (547)
Q Consensus 195 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~g~ 270 (547)
+..|.||||.|+..++.+++++|+ ...+...+..|..|.||||+|+..++ .+++++|+++|.+++..+ ..|.
T Consensus 145 ~~~g~t~L~~A~~~~~~~~v~~Ll--~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~--~~g~ 220 (285)
T 1wdy_A 145 RKGGATALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG--ERGK 220 (285)
T ss_dssp TCCCCCHHHHHHHHTCHHHHHHHH--HTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCC--TTSC
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHH--HhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcC--CCCC
Confidence 778999999999999999999999 33355677889999999999999999 899999999998876554 4599
Q ss_pred hHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeeccccccccccccccc
Q 008977 271 TALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDV 340 (547)
Q Consensus 271 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~ 340 (547)
||||+|+..|+.+++++|++..+...+.+|.+|+||||+|++.++.+ +...+.+.|++++.+|.
T Consensus 221 t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~------i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK------IAELLCKRGASTDCGDL 284 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH------HHHHHHHHSSCSCCSSC
T ss_pred cHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHH------HHHHHHHcCCCCCcccc
Confidence 99999999999999999999544445777999999999999998853 44677788999988874
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.8e-39 Score=313.01 Aligned_cols=259 Identities=19% Similarity=0.166 Sum_probs=234.7
Q ss_pred CHHHHHHHHcCCchHHHHHhhhhhhhhhc-ccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccccccc
Q 008977 2 DRKLFEAAAKGDIEPFREIARDELESIVT-DLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADA 80 (547)
Q Consensus 2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~-~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~ 80 (547)
+++|+.|++.|+.+.+++|+++|.+++.. +..|.|+| |+|+.. |+.++ +++|++ .+..++..|.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L-------~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~ 70 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL-------HNAVQM--SREDI--VELLLR----HGADPVLRKK 70 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCT
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHH-------HHHHHc--CCHHH--HHHHHH----cCCCCcccCC
Confidence 36899999999999999999999988877 66788888 999999 99999 999977 5777888999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977 81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS 160 (547)
Q Consensus 81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~ 160 (547)
.|.||||+|+..|+.+++++|++++.+ ++.++..|.||||+|+..|+.+++++|++++++++..
T Consensus 71 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 134 (285)
T 1wdy_A 71 NGATPFLLAAIAGSVKLLKLFLSKGAD----------------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134 (285)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC----------------CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccc
Confidence 999999999999999999999999876 5677899999999999999999999999999988743
Q ss_pred C---------CCCCCcHHHHHHHCCCHHHHHHHHHh-CCCCCCCCCCCchHHHHHHhcCC----HHHHHHHHcccccchh
Q 008977 161 A---------NRNNETPLYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHAAVYTYP----TEVIKQLFLHEEKRSL 226 (547)
Q Consensus 161 ~---------~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~~ 226 (547)
. +..|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..++ .+++++|+++ +..
T Consensus 135 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~---g~~ 211 (285)
T 1wdy_A 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GAD 211 (285)
T ss_dssp CCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT---TCC
T ss_pred cccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHc---CCC
Confidence 2 77899999999999999999999998 99999999999999999999999 8999999944 344
Q ss_pred hhhhccCCCcHHhHHHhcCChHHHHHHhc-cCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCcc
Q 008977 227 TAVRDKYGWTPLHHAAYSGRELTSKLLLD-HDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCC 296 (547)
Q Consensus 227 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~ 296 (547)
++.+|..|+||||+|+..|+.+++++|++ .|.+++..+ ..|.||||+|++.|+.+++++|+++|++..
T Consensus 212 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~--~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD--SDGKTALLLAVELKLKKIAELLCKRGASTD 280 (285)
T ss_dssp SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCC--TTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccC--CCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 66789999999999999999999999999 787776553 469999999999999999999999998863
No 7
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-40 Score=335.16 Aligned_cols=303 Identities=19% Similarity=0.178 Sum_probs=216.3
Q ss_pred CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977 2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK 81 (547)
Q Consensus 2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~ 81 (547)
..+|+.|+..|+.+.++.++++..+.. .-.+++ .-+... |+.+. +++++. ...+..
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~--g~~~~--~~~~~~---------~~~~~~ 93 (373)
T 2fo1_E 38 QHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYG-------NGNDFL--GDFNH--TNLQIP---------TEPEPE 93 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCCccccchhhhhhhhcccc----CccccC-------CCCCcc--ccccc--cccccc---------cCCCCC
Confidence 457788888888888888887653332 112233 566666 77777 666533 346889
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccc-cCCCCHhHHHHHcCCHHHHHHHH--------h
Q 008977 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTN-EEQNTPLHEAVRLRSVDVAKILI--------V 152 (547)
Q Consensus 82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~iv~~Ll--------~ 152 (547)
|.||||+|+..|+ +++++|++. + ++.+| ..|.||||+|+..|+.+++++|+ +
T Consensus 94 g~t~L~~Aa~~~~-~~~~~L~~~--~----------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~ 154 (373)
T 2fo1_E 94 SPIKLHTEAAGSY-AITEPITRE--S----------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 154 (373)
T ss_dssp CCCHHHHHHHSSS-CCCSCCSTT--T----------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH
T ss_pred CccHHHHHhcCCc-hHHHHhccc--c----------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999654 788777542 1 45566 78999999999999998877776 7
Q ss_pred hCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhcc
Q 008977 153 ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDK 232 (547)
Q Consensus 153 ~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~ 232 (547)
.|.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+.++......+..|.
T Consensus 155 ~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~ 233 (373)
T 2fo1_E 155 AGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233 (373)
T ss_dssp TCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred cCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence 888887 7899999999999999999999999999999999999999999999999999999999965544456778899
Q ss_pred CCCcHHhHHHhcC---ChHHHHHHhccCCCcceec------CCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCC
Q 008977 233 YGWTPLHHAAYSG---RELTSKLLLDHDKSAAFIG------GKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERG 303 (547)
Q Consensus 233 ~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g 303 (547)
.|.||||+|+..+ +.+++++|+++|.+.+... .+..|.||||+|+..|+.+++++|++.++...+.+|.+|
T Consensus 234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g 313 (373)
T 2fo1_E 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG 313 (373)
T ss_dssp TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence 9999999999998 8999999999998876521 344799999999999999999999999866667889999
Q ss_pred CcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhc
Q 008977 304 WNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR 354 (547)
Q Consensus 304 ~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~ 354 (547)
+||||+|+..++.+ +...|++.|++++.+|..|+||||+|+..+.
T Consensus 314 ~TpL~~A~~~g~~~------iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~ 358 (373)
T 2fo1_E 314 KTPIMLAAQEGRIE------VVMYLIQQGASVEAVDATDHTARQLAQANNH 358 (373)
T ss_dssp CCHHHHHHHHTCHH------HHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHH------HHHHHHHcCCCccCCCCCCCCHHHHHHHcCC
Confidence 99999999999864 4456777899999999999999999998743
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=311.32 Aligned_cols=244 Identities=20% Similarity=0.188 Sum_probs=210.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977 81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS 160 (547)
Q Consensus 81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~ 160 (547)
+|+||||+|+..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|++++ .
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~ 64 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA----------------VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-G 64 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC----------------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-C
Confidence 689999999999999999999998776 56789999999999999999999999999999987 7
Q ss_pred CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhH
Q 008977 161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHH 240 (547)
Q Consensus 161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~ 240 (547)
.|..|.||||+|+..|+.+++++|+++|++++. +.+|.||||+|+..++.++++.|+++ +...+.+|..|.||||+
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~ 140 (261)
T 2xai_A 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAY---GGNIDHKISHLGTPLYL 140 (261)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCBTTTBCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCCcCCCCCCCHHHH
Confidence 899999999999999999999999999999875 45699999999999999999999944 34567789999999999
Q ss_pred HHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCccccc
Q 008977 241 AAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSS 320 (547)
Q Consensus 241 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~ 320 (547)
|+..|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+++....
T Consensus 141 A~~~~~~~~v~~Ll~~g~~~~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpl~~A~~~~~~~~~- 215 (261)
T 2xai_A 141 ACENQQRACVKKLLESGADVNQ---GKGQDSPLHAVARTASEELACLLMDFGADT-QAKNAEGKRPVELVPPESPLAQL- 215 (261)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTC---CBTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGSCTTCTHHHH-
T ss_pred HHHhCCHHHHHHHHHcCCCCCC---CCCCCChHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCChhhhccccccHHHH-
Confidence 9999999999999999998873 447999999999999999999999999886 56799999999999976652111
Q ss_pred ceeeec---ccccccccccccccCCCchhHHHHHh
Q 008977 321 GLVIKH---PTVRNSRLLIAEDVNGNTPLHVVAAV 352 (547)
Q Consensus 321 ~~~~~~---~l~~~~~~~~~~d~~G~T~Lh~A~~~ 352 (547)
.... ........++.+|..|+||+|+|.+.
T Consensus 216 --ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~ 248 (261)
T 2xai_A 216 --FLEREGPPSLMQLCRLRIRKCFGIQQHHKITKL 248 (261)
T ss_dssp --HHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGS
T ss_pred --HHhccCCccHHHHHHHHHHHHhchhccccCccc
Confidence 1110 01112246778999999999998876
No 9
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=4.2e-39 Score=321.64 Aligned_cols=300 Identities=22% Similarity=0.230 Sum_probs=243.5
Q ss_pred HHHHHHHHcCCchHHHHHhhh-hhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977 3 RKLFEAAAKGDIEPFREIARD-ELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK 81 (547)
Q Consensus 3 ~~L~~A~~~g~~~~l~~ll~~-~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~ 81 (547)
++|+.|++.|+.+.++.++.. +.+++..+..|+||| |+|+.. |+.++ +++|++ .+..++.+|..
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~ 90 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL-------HLAAGY--NRVRI--VQLLLQ----HGADVHAKDKG 90 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCTT
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHH-------HHHHHc--CCHHH--HHHHHH----cCCCCCccCCC
Confidence 689999999999999999886 788888888999999 999999 99999 999977 57888999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC
Q 008977 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA 161 (547)
Q Consensus 82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~ 161 (547)
|.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++.. ..
T Consensus 91 g~t~L~~A~~~g~~~iv~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~ 153 (351)
T 3utm_A 91 GLVPLHNACSYGHYEVTELLLKHGAC----------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LV 153 (351)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred CCcHHHHHHHCCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cc
Confidence 99999999999999999999999876 56778999999999999999999999999999987 77
Q ss_pred CCCCCcHHHHH---------------------HHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhc---CCHHHHHHH
Q 008977 162 NRNNETPLYMA---------------------AANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYT---YPTEVIKQL 217 (547)
Q Consensus 162 ~~~g~tpL~~A---------------------~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~---~~~~~v~~L 217 (547)
+..|.+|+++| +..+..+.++.++.........+..|.||||+|+.. +..+++++|
T Consensus 154 ~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~L 233 (351)
T 3utm_A 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL 233 (351)
T ss_dssp CTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHH
T ss_pred cCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHH
Confidence 88999987764 566777777777777766666778899999999999 557899999
Q ss_pred HcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccc
Q 008977 218 FLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA 297 (547)
Q Consensus 218 l~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~ 297 (547)
+.. +..++.+|..|+||||+|+..|+.+++++|+++|.+++..+ ..|.||||+|+..|+.+++++|++++++. +
T Consensus 234 l~~---g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d--~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~ 307 (351)
T 3utm_A 234 LRK---GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD--SLGQTALHRAALAGHLQTCRLLLSYGSDP-S 307 (351)
T ss_dssp HHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-T
T ss_pred HHc---CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC--CCCCCHHHHHHHcCcHHHHHHHHHcCCCC-C
Confidence 943 44567789999999999999999999999999998887654 46999999999999999999999999886 5
Q ss_pred cccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhh
Q 008977 298 KVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVC 353 (547)
Q Consensus 298 ~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~ 353 (547)
.+|..|+||+|+|..... ..+.+. ......++.+++..|++.|
T Consensus 308 ~~~~~g~tal~~a~~~~~----------~~l~~~---~~~~~~~~~~~l~~A~~~g 350 (351)
T 3utm_A 308 IISLQGFTAAQMGNEAVQ----------QILSES---TPMRTSDVDYRLLEASKAG 350 (351)
T ss_dssp CCCTTSCCHHHHSCHHHH----------HHHHHC----------------------
T ss_pred CcCCCCCChhhhhhHHHH----------HHHHhc---cccccCcceeehhhhhccC
Confidence 679999999999843321 122221 1234567788888888764
No 10
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.5e-38 Score=316.12 Aligned_cols=274 Identities=22% Similarity=0.207 Sum_probs=238.5
Q ss_pred CCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccccccc-CCChHHHHHHHcCCHHHHHHHHHHhhcCCch
Q 008977 33 MNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADA-KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRD 111 (547)
Q Consensus 33 ~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~-~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~ 111 (547)
+|+|+| |.|+.. |+.++ |++|++ .+.+++.++. .|+||||+||..|+.++|++|+++|++
T Consensus 24 ~~~t~L-------~~Av~~--g~~~~--V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~---- 84 (337)
T 4g8k_A 24 EDNHLL-------IKAVQN--EDVDL--VQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD---- 84 (337)
T ss_dssp HHHHHH-------HHHHHT--TCHHH--HHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----
T ss_pred CCChHH-------HHHHHc--CCHHH--HHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc----
Confidence 456666 999999 99999 999977 4677777665 599999999999999999999999987
Q ss_pred hhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCC
Q 008977 112 LQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP 191 (547)
Q Consensus 112 ~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~ 191 (547)
++.++..+.++++.++..+..++++.+++.+++++ ..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 85 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~ 151 (337)
T 4g8k_A 85 ------------PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151 (337)
T ss_dssp ------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred ------------hhhhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Confidence 56779999999999999999999999999999987 78999999999999999999999999999887
Q ss_pred CC----------CCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCC----hHHHHHHhccC
Q 008977 192 AH----------EGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR----ELTSKLLLDHD 257 (547)
Q Consensus 192 ~~----------~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~~ 257 (547)
+. .+..|.||||+|+..|+.+++++|+ ...+..++.+|..|.||+|.++..+. .+++++|+++|
T Consensus 152 ~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL--~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g 229 (337)
T 4g8k_A 152 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 229 (337)
T ss_dssp TCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHH--HHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT
T ss_pred chhhccccccccccCCCCcHHHHHHHCCCHHHHHHHH--hccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC
Confidence 65 3456899999999999999999999 44456678889999999999887654 46889999999
Q ss_pred CCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccc
Q 008977 258 KSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIA 337 (547)
Q Consensus 258 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 337 (547)
++++..+. .|.||||+|+..|+.++++.|++.....++.+|.+|+||||+|++.|+.+ +...|++.|+++|.
T Consensus 230 ad~n~~d~--~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~------iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 230 ADVNVRGE--RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK------IAELLCKRGASTDC 301 (337)
T ss_dssp CCTTCCCG--GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHH------HHHHHHTTSCSSTT
T ss_pred CCCCCcCC--CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHH------HHHHHHHCCCCCCC
Confidence 98876543 59999999999999999999999866666788999999999999999864 44567788887765
Q ss_pred cccCCCchhHHHHHhh
Q 008977 338 EDVNGNTPLHVVAAVC 353 (547)
Q Consensus 338 ~d~~G~T~Lh~A~~~~ 353 (547)
.||||+|++.+
T Consensus 302 -----~~~L~~A~~~~ 312 (337)
T 4g8k_A 302 -----GDLVMTARRNY 312 (337)
T ss_dssp -----CCHHHHHHHTT
T ss_pred -----CCHHHHHHHcC
Confidence 46999999874
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=308.30 Aligned_cols=245 Identities=19% Similarity=0.152 Sum_probs=196.3
Q ss_pred CCCceeccCCccceeEeeecCCceecchhhHHHHHhhc-------CCccccccccCCChHHHHHHHcCCHHHHHHHHHHh
Q 008977 33 MNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDL-------SPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFA 105 (547)
Q Consensus 33 ~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~-------~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~ 105 (547)
.|.|++ |+|+.. |+.+. +..++..-.. -...++.+|.+|.||||+|+..|+.++|++|++.+
T Consensus 14 ~~~~~l-------H~Aa~~--g~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g 82 (285)
T 3d9h_A 14 LVPRGS-------HMASMD--GKQGG--MDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG 82 (285)
T ss_dssp ---------------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHH-------HHHhhc--CCCCC--cccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 666777 999999 99766 5554331100 12335678999999999999999999999999988
Q ss_pred hcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHH
Q 008977 106 KKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKIL 185 (547)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll 185 (547)
.+ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+
T Consensus 83 ~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll 145 (285)
T 3d9h_A 83 WA----------------VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLL 145 (285)
T ss_dssp CC----------------SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred CC----------------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHH
Confidence 76 66789999999999999999999999999999987 78999999999999999999999999
Q ss_pred HhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecC
Q 008977 186 QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGG 265 (547)
Q Consensus 186 ~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 265 (547)
++|++++..+ .|.||||+|+..|+.+++++|++++ ..++.+|..|+||||+|+..|+.+++++|+++|++.+.
T Consensus 146 ~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--- 218 (285)
T 3d9h_A 146 QHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG---GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ--- 218 (285)
T ss_dssp HTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTT---CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC---
T ss_pred HCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC---
Confidence 9999987644 5999999999999999999999443 44677899999999999999999999999999988873
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHh
Q 008977 266 KDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVS 313 (547)
Q Consensus 266 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 313 (547)
+..|.||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+.+
T Consensus 219 ~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 219 GKGQDSPLHAVVRTASEELACLLMDFGADT-QAKNAEGKRPVELVPPE 265 (285)
T ss_dssp CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGSCTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHhcCc
Confidence 447999999999999999999999998876 56799999999999844
No 12
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.1e-38 Score=304.60 Aligned_cols=254 Identities=20% Similarity=0.174 Sum_probs=192.0
Q ss_pred ccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhC
Q 008977 75 LFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVAD 154 (547)
Q Consensus 75 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~ 154 (547)
++.+|.+|+||||+|+..|+.++|++|++.+++.. .++.++..|.||||+|+..|+.+++++|+++|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 68 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE-------------YLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG-------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc-------------cccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 46689999999999999999999999999887531 26678999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCC-------------CCCCCchHHHHHHhcCCHHHHHHHHccc
Q 008977 155 PHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH-------------EGPDGKTALHAAVYTYPTEVIKQLFLHE 221 (547)
Q Consensus 155 ~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~-------------~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 221 (547)
++++ ..+..|.||||+|+..|+.+++++|++++++... ....+.++++.+...+.......++ .
T Consensus 69 a~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 145 (282)
T 1oy3_D 69 AGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD--E 145 (282)
T ss_dssp CCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------C--C
T ss_pred CCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhh--h
Confidence 9987 7889999999999999999999999999876432 2234566777776665554444443 3
Q ss_pred ccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccC
Q 008977 222 EKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDE 301 (547)
Q Consensus 222 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~ 301 (547)
..+...+.++..|.||||+|+..|+.+++++|+++|++++..... .|.||||+|+..|+.+++++|++++++. +.+|.
T Consensus 146 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~ 223 (282)
T 1oy3_D 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT-CGRTPLHLAVEAQAASVLELLLKAGADP-TARMY 223 (282)
T ss_dssp CGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred hhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccc
Confidence 445567788999999999999999999999999999988765432 5999999999999999999999998886 56799
Q ss_pred CCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHh
Q 008977 302 RGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAV 352 (547)
Q Consensus 302 ~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~ 352 (547)
.|+||||+|+..++.+ +...+++.|++++.+|.+|+|||++|...
T Consensus 224 ~g~tpL~~A~~~~~~~------~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 224 GGRTPLGSALLRPNPI------LARLLRAHGAPEPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp TSCCHHHHHHTSSCHH------HHHHHHHTTCCCCCCC-------------
T ss_pred CCCCHHHHHHHcCCcH------HHHHHHHcCCCcCcCCCcccccccccCCc
Confidence 9999999999999853 44677889999999999999999998765
No 13
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1e-37 Score=296.91 Aligned_cols=236 Identities=22% Similarity=0.196 Sum_probs=176.2
Q ss_pred hhhhhcccCCCceeccCCccceeEeeecCC-------------ceecchhhHHHHHhhcCCccccccccCCChHHHHHHH
Q 008977 25 LESIVTDLMNNTVLYGNITASHLTLQTEEG-------------EIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAK 91 (547)
Q Consensus 25 ~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g-------------~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~ 91 (547)
+|++.+|.+|.||| |+|+.. | +.++ +++|++ .+.......|..|.||||+|+.
T Consensus 1 ~dvn~~d~~g~tpL-------~~A~~~--g~~~~~~~~~~~~~~~~~--v~~Ll~---~g~~~~~~~d~~g~t~L~~A~~ 66 (253)
T 1yyh_A 1 MDVNVRGPDGFTPL-------MIASCS--GGGLETGNSEEEEDAPAV--ISDFIY---QGASLHNQTDRTGETALHLAAR 66 (253)
T ss_dssp -----------------------------------------------------------------CCCTTSCCHHHHHHH
T ss_pred CCCCCCCCCCCcHH-------HHHHhc--cccccccchhhcCCChHH--HHHHHH---ccCCcccccCCCCCcHHHHHHH
Confidence 36778888999999 999997 6 7888 888855 3444445678999999999999
Q ss_pred cCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHH
Q 008977 92 KGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYM 171 (547)
Q Consensus 92 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 171 (547)
.|+.++|++|++++++ ++.++..|.||||+|+..|+.+++++|++.++......+..|.||||+
T Consensus 67 ~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~ 130 (253)
T 1yyh_A 67 YSRSDAAKRLLEASAD----------------ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 130 (253)
T ss_dssp TTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHH
T ss_pred cCCHHHHHHHHHcCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHH
Confidence 9999999999999876 567789999999999999999999999999884445788999999999
Q ss_pred HHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHH
Q 008977 172 AAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSK 251 (547)
Q Consensus 172 A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~ 251 (547)
|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++ +...+.+|..|.||||+|+..|+.++++
T Consensus 131 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpL~~A~~~~~~~~v~ 207 (253)
T 1yyh_A 131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN---GANKDMQNNREETPLFLAAREGSYETAK 207 (253)
T ss_dssp HHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999954 3446678999999999999999999999
Q ss_pred HHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCc
Q 008977 252 LLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGC 295 (547)
Q Consensus 252 ~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 295 (547)
+|+++|++.+..+ ..|.||+|+|+++|+.+++++|.+..+..
T Consensus 208 ~Ll~~ga~~~~~d--~~g~tpl~~A~~~g~~~i~~~l~~~~~~~ 249 (253)
T 1yyh_A 208 VLLDHFANRDITD--HMDRLPRDIAQERMHHDIVRLLDLEHHHH 249 (253)
T ss_dssp HHHHTTCCTTCCC--TTCCCHHHHHHHTTCHHHHHHHHC-----
T ss_pred HHHHcCCCccccc--cCCCCHHHHHHHcCCHHHHHHHHHHhhhc
Confidence 9999999877654 46999999999999999999999876553
No 14
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=8.8e-38 Score=314.69 Aligned_cols=258 Identities=24% Similarity=0.247 Sum_probs=225.0
Q ss_pred CHHHHHHHHcCCchHHHHHhhhhhhhhhcc-cCCCceeccCCccceeEeeecCCceecchhhHHHHH----hhcCCcccc
Q 008977 2 DRKLFEAAAKGDIEPFREIARDELESIVTD-LMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHI----LDLSPSVLF 76 (547)
Q Consensus 2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~-~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~----~~~~~~~~~ 76 (547)
.++||.|+..| .++++.|+.. +++..+ ..|.|+| |+|+.. |+.++ +++|+.. +-..+.+++
T Consensus 95 ~t~L~~Aa~~~-~~~~~~L~~~--~~n~~d~~~g~t~L-------h~Aa~~--g~~~~--v~~Ll~~~~~~ll~~ga~vn 160 (373)
T 2fo1_E 95 PIKLHTEAAGS-YAITEPITRE--SVNIIDPRHNRTVL-------HWIASN--SSAEK--SEDLIVHEAKECIAAGADVN 160 (373)
T ss_dssp CCHHHHHHHSS-SCCCSCCSTT--TTTTCCCSSCCCHH-------HHHHCT--TCCSC--CTTHHHHHHHHHHHTCCCTT
T ss_pred ccHHHHHhcCC-chHHHHhccc--cccccCCcCCCCHH-------HHHHHC--CCHHH--HHHHHHHHHHHHHhcCCCCc
Confidence 35799999955 5788777654 455666 6788888 999999 99999 9998631 224688899
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhC--
Q 008977 77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVAD-- 154 (547)
Q Consensus 77 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~-- 154 (547)
.+|..|.||||+|+..|+.++|++|++++++ ++.++..|.||||+|+..|+.+++++|++.+
T Consensus 161 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 224 (373)
T 2fo1_E 161 AMDCDENTPLMLAVLARRRRLVAYLMKAGAD----------------PTIYNKSERSALHQAAANRDFGMMVYMLNSTKL 224 (373)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----------------SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHH
T ss_pred CCCCCCCCHHHHHHHcChHHHHHHHHHCCCC----------------CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCcc
Confidence 9999999999999999999999999999887 5677999999999999999999999999987
Q ss_pred -CCCCCCCCCCCCcHHHHHHHCC---CHHHHHHHHHhCCCCCC--------CCCCCchHHHHHHhcCCHHHHHHHHcccc
Q 008977 155 -PHVPYSANRNNETPLYMAAANG---SVEIVAKILQKCPSPAH--------EGPDGKTALHAAVYTYPTEVIKQLFLHEE 222 (547)
Q Consensus 155 -~~~~~~~~~~g~tpL~~A~~~g---~~~iv~~Ll~~~~~~~~--------~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~ 222 (547)
.+++ ..+..|.||||+|+..| +.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+ ..
T Consensus 225 ~~~~~-~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll--~~ 301 (373)
T 2fo1_E 225 KGDIE-ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV--GE 301 (373)
T ss_dssp HHTTS-CCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH--HH
T ss_pred ccChh-hcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHH--Hh
Confidence 5655 77899999999999998 89999999999999875 5678999999999999999999999 44
Q ss_pred cchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCC
Q 008977 223 KRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDG 294 (547)
Q Consensus 223 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 294 (547)
.+...+.+|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.+|+.+++++|++++++
T Consensus 302 ~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d--~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 302 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD--ATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC--SSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCC--CCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 446678889999999999999999999999999998887654 4599999999999999999999998775
No 15
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.7e-38 Score=301.46 Aligned_cols=241 Identities=20% Similarity=0.161 Sum_probs=211.4
Q ss_pred CCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHH
Q 008977 41 NITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAE 120 (547)
Q Consensus 41 ~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 120 (547)
++||||+|+.. |+.++ +++|++ .+..++.+|.+|.||||+|+..|+.++|++|++++++
T Consensus 3 g~t~L~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------- 61 (261)
T 2xai_A 3 DWSPMHEAAIH--GHQLS--LRNLIS----QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ------------- 61 (261)
T ss_dssp -CCHHHHHHHH--TCHHH--HHHHHH----TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-------------
T ss_pred CCCHHHHHHHc--CCHHH--HHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-------------
Confidence 34555999999 99999 999977 5778899999999999999999999999999999876
Q ss_pred HHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCch
Q 008977 121 RQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKT 200 (547)
Q Consensus 121 ~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t 200 (547)
++.+|..|.||||+|+..|+.+++++|+++|++.+ .+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus 62 ---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 136 (261)
T 2xai_A 62 ---VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGT 136 (261)
T ss_dssp ---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBC
T ss_pred ---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCC
Confidence 56789999999999999999999999999999876 4556999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcC
Q 008977 201 ALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASG 280 (547)
Q Consensus 201 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g 280 (547)
|||+|+..++.+++++|++++.. .+ .+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.++
T Consensus 137 ~L~~A~~~~~~~~v~~Ll~~g~~---~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d--~~g~tpl~~A~~~~ 210 (261)
T 2xai_A 137 PLYLACENQQRACVKKLLESGAD---VN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKN--AEGKRPVELVPPES 210 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCC---TT-CCBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCC--TTSCCGGGGSCTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCCC---CC-CCCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCChhhhccccc
Confidence 99999999999999999955443 33 38899999999999999999999999999887654 46999999999655
Q ss_pred CHHHHHHHhhcCCCc-------cccccCCCCcHHHHHHHhcC
Q 008977 281 HIMVVDRILSSCDGC-------CAKVDERGWNFLHFAMVSLD 315 (547)
Q Consensus 281 ~~~~v~~Ll~~~~~~-------~~~~d~~g~t~Lh~A~~~~~ 315 (547)
++++.|++.+... ...+|..|+|++|.|.+...
T Consensus 211 --~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~ 250 (261)
T 2xai_A 211 --PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250 (261)
T ss_dssp --THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSS
T ss_pred --cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCC
Confidence 4888899876532 34578999999999886554
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.6e-37 Score=294.18 Aligned_cols=224 Identities=21% Similarity=0.184 Sum_probs=168.4
Q ss_pred cccccccCCChHHHHHHHcC-------------CHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHH
Q 008977 74 VLFQADAKGDSPLHLAAKKG-------------DAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR 140 (547)
Q Consensus 74 ~~~~~~~~g~t~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~ 140 (547)
+++.+|.+|.||||+|+..| +.+++++|++.+++. .+..|..|.||||+|+.
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~---------------~~~~d~~g~t~L~~A~~ 66 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL---------------HNQTDRTGETALHLAAR 66 (253)
T ss_dssp -----------------------------------------------------------------CCCTTSCCHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc---------------ccccCCCCCcHHHHHHH
Confidence 35778999999999999987 899999999987763 23458899999999999
Q ss_pred cCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCC-CCCCCCCCCchHHHHHHhcCCHHHHHHHHc
Q 008977 141 LRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP-SPAHEGPDGKTALHAAVYTYPTEVIKQLFL 219 (547)
Q Consensus 141 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~ 219 (547)
.|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++++ +++..+..|.||||+|+..++.+++++|++
T Consensus 67 ~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 145 (253)
T 1yyh_A 67 YSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 145 (253)
T ss_dssp TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence 999999999999999987 778999999999999999999999999987 888899999999999999999999999994
Q ss_pred ccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccc
Q 008977 220 HEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKV 299 (547)
Q Consensus 220 ~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~ 299 (547)
. +..++.+|..|+||||+|+..|+.+++++|+++|++.+..+ ..|.||||+|+..|+.+++++|++++++. +.+
T Consensus 146 ~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~ 219 (253)
T 1yyh_A 146 S---HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN--NREETPLFLAAREGSYETAKVLLDHFANR-DIT 219 (253)
T ss_dssp T---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCC
T ss_pred c---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHCCCHHHHHHHHHcCCCc-ccc
Confidence 3 44567788999999999999999999999999998877654 46999999999999999999999999886 566
Q ss_pred cCCCCcHHHHHHHhcCcccc
Q 008977 300 DERGWNFLHFAMVSLDLLQS 319 (547)
Q Consensus 300 d~~g~t~Lh~A~~~~~~~~~ 319 (547)
|..|+||||+|+++++.+..
T Consensus 220 d~~g~tpl~~A~~~g~~~i~ 239 (253)
T 1yyh_A 220 DHMDRLPRDIAQERMHHDIV 239 (253)
T ss_dssp CTTCCCHHHHHHHTTCHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHH
Confidence 99999999999999986533
No 17
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=301.53 Aligned_cols=251 Identities=19% Similarity=0.168 Sum_probs=201.7
Q ss_pred CHHHHHHHHcCCchHHHHHhhhhh-----------hhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhc
Q 008977 2 DRKLFEAAAKGDIEPFREIARDEL-----------ESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDL 70 (547)
Q Consensus 2 ~~~L~~A~~~g~~~~l~~ll~~~~-----------~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~ 70 (547)
++.||.|+++|+.+.+..++..+. ..+..+.+|+|+| |+|+.. |+.++ +++|++
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L-------~~Aa~~--g~~~~--v~~Ll~---- 80 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPM-------HEAAIH--GHQLS--LRNLIS---- 80 (285)
T ss_dssp --------------------------CCSEECCCCTTCSSSCCSCCHH-------HHHHHT--TCHHH--HHHHHH----
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHH-------HHHHHc--CCHHH--HHHHHH----
Confidence 468999999999888888665421 1334566777777 999999 99999 999977
Q ss_pred CCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHH
Q 008977 71 SPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKIL 150 (547)
Q Consensus 71 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~L 150 (547)
.+..++.+|..|.||||+|+..|+.++|++|++++++ ++.+|..|.||||+|+..|+.+++++|
T Consensus 81 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~L 144 (285)
T 3d9h_A 81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ----------------VNGVTADWHTPLFNACVSGSWDCVNLL 144 (285)
T ss_dssp TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------SSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCHHHHHHHH
Confidence 5677889999999999999999999999999999876 567899999999999999999999999
Q ss_pred HhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhh
Q 008977 151 IVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVR 230 (547)
Q Consensus 151 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 230 (547)
++.++++. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. .+ .
T Consensus 145 l~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~-~ 218 (285)
T 3d9h_A 145 LQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD---VN-Q 218 (285)
T ss_dssp HHTTCCSS--CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC---TT-C
T ss_pred HHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC---CC-C
Confidence 99999876 345699999999999999999999999999999999999999999999999999999955443 33 3
Q ss_pred ccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCC
Q 008977 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCD 293 (547)
Q Consensus 231 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 293 (547)
+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+ ++.+++++|+++..
T Consensus 219 ~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d--~~g~t~l~~A~--~~~~~~~~Ll~~~~ 277 (285)
T 3d9h_A 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQAKN--AEGKRPVELVP--PESPLAQLFLEREG 277 (285)
T ss_dssp CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCGGGGSC--TTSHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC--CCCCCHHHHhc--CccHHHHHHHHhhc
Confidence 8899999999999999999999999998877654 46999999999 56799999999843
No 18
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.3e-36 Score=284.55 Aligned_cols=220 Identities=25% Similarity=0.263 Sum_probs=195.1
Q ss_pred cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977 74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA 153 (547)
Q Consensus 74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ 153 (547)
+++..|.+|.||||+|+..|+.+++++|++++.+ ++..+..|.||||+|+..|+.+++++|+++
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN----------------IDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC----------------cCccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 3566888999999999999999999999998876 566788999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC-CCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhcc
Q 008977 154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC-PSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDK 232 (547)
Q Consensus 154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~-~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~ 232 (547)
|++++ ..+..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..++.+++++|++. +..++.+|.
T Consensus 67 g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~ 142 (237)
T 3b7b_A 67 GALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK---GSDINIRDN 142 (237)
T ss_dssp TCCCC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCT
T ss_pred CCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCccCC
Confidence 98876 67889999999999999999999999998 78888899999999999999999999999944 344667788
Q ss_pred CCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHH
Q 008977 233 YGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMV 312 (547)
Q Consensus 233 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 312 (547)
.|.||||+|+..|+.+++++|+++|.+++..+ ..|.||||+|++.|+.+++++|++++++. +.+|.+|+||||+|+.
T Consensus 143 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 143 EENICLHWAAFSGCVDIAEILLAAKCDLHAVN--IHGDSPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQCASL 219 (237)
T ss_dssp TSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCC--TTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHSCT
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHhCCHhHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 99999999999999999999999998876654 45999999999999999999999998886 5568999999999998
Q ss_pred hcCc
Q 008977 313 SLDL 316 (547)
Q Consensus 313 ~~~~ 316 (547)
+++.
T Consensus 220 ~~~~ 223 (237)
T 3b7b_A 220 NSQV 223 (237)
T ss_dssp TCHH
T ss_pred HHHH
Confidence 8774
No 19
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=9e-38 Score=313.99 Aligned_cols=274 Identities=20% Similarity=0.205 Sum_probs=228.8
Q ss_pred HHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCC
Q 008977 3 RKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKG 82 (547)
Q Consensus 3 ~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g 82 (547)
++||.|+..|+.+++++|+++|.+++..+..|.|+| |+|+.. |+.++ +++|++. +. ...+.+|
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~~----g~--~~~~~~g 84 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-------HLACKF--GCVDT--AKYLASV----GE--VHSLWHG 84 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-------HHHHHH--CCHHH--HHHHHHH----CC--CCCCBTT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-------HHHHHc--CCHHH--HHHHHHC----CC--CccccCC
Confidence 689999999999999999999999999999999999 999999 99999 9999773 22 2334589
Q ss_pred ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhh-----hHHHHHhcccccCCCCHhHHHHHcC--CHHHHHHHHhhCC
Q 008977 83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVK-----SAERQMLGMTNEEQNTPLHEAVRLR--SVDVAKILIVADP 155 (547)
Q Consensus 83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~ 155 (547)
.||||+|+..|+.++|++|++.+.....+...... .......+.++..|.||||+|+..| +.+++++|++.|+
T Consensus 85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga 164 (364)
T 3ljn_A 85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164 (364)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence 99999999999999999999985432111110000 0000112347889999999999999 9999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCC-----CCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhh
Q 008977 156 HVPYSANRNNETPLYMAAANGSVEIVAKILQKCPS-----PAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVR 230 (547)
Q Consensus 156 ~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~-----~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 230 (547)
+++ ..|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|++++ ..++.+
T Consensus 165 ~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---ad~~~~ 240 (364)
T 3ljn_A 165 SPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG---IDVNME 240 (364)
T ss_dssp CTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT---CCTTCC
T ss_pred CCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCC
Confidence 987 7889999999999999999999999999998 8889999999999999999999999999544 446778
Q ss_pred ccCCCcHHhHHHhcCChHHHHHHhccCCCcceec----------CCCCCchHHHHHHHcCCHHHHHHHhhcCCCccc
Q 008977 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIG----------GKDRNMTALHLAAASGHIMVVDRILSSCDGCCA 297 (547)
Q Consensus 231 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~----------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~ 297 (547)
|..|+||||+|+..|+.+++++|++++++..... .+..+.||++.|+..|+.+.+..|++.+.+...
T Consensus 241 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~~ 317 (364)
T 3ljn_A 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVV 317 (364)
T ss_dssp CTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987643322 234678999999999999888888887655433
No 20
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=6e-38 Score=315.28 Aligned_cols=256 Identities=18% Similarity=0.171 Sum_probs=211.1
Q ss_pred hhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHH
Q 008977 25 LESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKF 104 (547)
Q Consensus 25 ~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~ 104 (547)
++.+..|.+|.|+| |+|+.. |+.++ +++|++ .+..++.+|..|.||||+|+..|+.++|++|+++
T Consensus 11 ~~~~~~d~~g~t~L-------~~Aa~~--g~~~~--v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 75 (364)
T 3ljn_A 11 LNRIKSDDENMEKI-------HVAARK--GQTDE--VRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75 (364)
T ss_dssp -----CCHHHHHHH-------HHHHHH--TCHHH--HHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH
T ss_pred CCccccCCCCCCHH-------HHHHHc--CCHHH--HHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 44556677888888 999999 99999 999976 5778888999999999999999999999999998
Q ss_pred hhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh----CCCCCC----------------CCCCC
Q 008977 105 AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA----DPHVPY----------------SANRN 164 (547)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~----~~~~~~----------------~~~~~ 164 (547)
+++. .+..|.||||+|+..|+.+++++|++. +.+.+. ..+..
T Consensus 76 g~~~------------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (364)
T 3ljn_A 76 GEVH------------------SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCK 137 (364)
T ss_dssp CCCC------------------CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEES
T ss_pred CCCc------------------cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCC
Confidence 8742 245799999999999999999999998 665541 16678
Q ss_pred CCcHHHHHHHCC--CHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHccccc--chhhhhhccCCCcHHhH
Q 008977 165 NETPLYMAAANG--SVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEK--RSLTAVRDKYGWTPLHH 240 (547)
Q Consensus 165 g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~--~~~~~~~d~~g~tpLh~ 240 (547)
|.||||+|+..| +.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++.. ....+..|..|+||||+
T Consensus 138 g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~ 217 (364)
T 3ljn_A 138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217 (364)
T ss_dssp CCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH
T ss_pred CCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH
Confidence 999999999999 99999999999999999999999999999999999999999954332 12267788999999999
Q ss_pred HHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccc-----------cccCCCCcHHHH
Q 008977 241 AAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCA-----------KVDERGWNFLHF 309 (547)
Q Consensus 241 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~-----------~~d~~g~t~Lh~ 309 (547)
|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++++++... ..+..|+||++.
T Consensus 218 A~~~g~~~~v~~Ll~~gad~~~~d--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (364)
T 3ljn_A 218 AILINWEDVAMRFVEMGIDVNMED--NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295 (364)
T ss_dssp HHTTTCHHHHHHHHTTTCCTTCCC--TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSC
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCC--CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchh
Confidence 999999999999999998887654 4699999999999999999999998765311 134556666666
Q ss_pred HHHhcC
Q 008977 310 AMVSLD 315 (547)
Q Consensus 310 A~~~~~ 315 (547)
|+..++
T Consensus 296 aa~~~~ 301 (364)
T 3ljn_A 296 AAADPS 301 (364)
T ss_dssp SSCCHH
T ss_pred hhhccC
Confidence 655554
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.1e-37 Score=290.37 Aligned_cols=224 Identities=26% Similarity=0.290 Sum_probs=178.3
Q ss_pred ccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhC
Q 008977 75 LFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVAD 154 (547)
Q Consensus 75 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~ 154 (547)
++.+|.+|+||||+|+..|+.+++++|++....... .++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR------------ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTC------------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCC------------CCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 356788889999999999999999988884322111 15667888899999999999999999999888
Q ss_pred CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCC----CCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhh
Q 008977 155 PHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP----SPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVR 230 (547)
Q Consensus 155 ~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~----~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 230 (547)
++++ ..+..|.||||+|+..|+.+++++|++.++ +++..+..|.||||+|+..++.+++++|++.+ ...+..
T Consensus 70 ~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~ 145 (241)
T 1k1a_A 70 ASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG---ADIDAV 145 (241)
T ss_dssp CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCTTCC
T ss_pred CCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC---CCcccc
Confidence 8876 668888899999999999999999998887 67778888899999999999999999888443 334445
Q ss_pred c-cCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHH
Q 008977 231 D-KYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHF 309 (547)
Q Consensus 231 d-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 309 (547)
+ ..|.||||+|+..|+.+++++|+++|.+++..+ ..|.||||+|+..|+.+++++|++++++. +.+|..|+||||+
T Consensus 146 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~ 222 (241)
T 1k1a_A 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM--YSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMV 222 (241)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBC--TTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCTTTT
T ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCCHHHHHHHHhcCCCC-CCcCCCCCCHHHH
Confidence 5 778899999999999999999999888776553 35889999999999999999999888775 5568889999999
Q ss_pred HHHhcCcc
Q 008977 310 AMVSLDLL 317 (547)
Q Consensus 310 A~~~~~~~ 317 (547)
|+..++.+
T Consensus 223 A~~~~~~~ 230 (241)
T 1k1a_A 223 ARSRRVID 230 (241)
T ss_dssp CSSHHHHH
T ss_pred HHhcCcHH
Confidence 88887754
No 22
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.7e-36 Score=284.77 Aligned_cols=223 Identities=21% Similarity=0.188 Sum_probs=195.1
Q ss_pred hcccccCCCCHhHHHHHcCCHHHHHHHHh----hCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCc
Q 008977 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIV----ADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGK 199 (547)
Q Consensus 124 l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~ 199 (547)
++.+|.+|.||||+|+..|+.+++++|++ .+.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ 80 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence 45679999999999999999999999997 566665 7889999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCHHHHHHHHcccccc-hhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHH
Q 008977 200 TALHAAVYTYPTEVIKQLFLHEEKR-SLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAA 278 (547)
Q Consensus 200 t~Lh~A~~~~~~~~v~~Ll~~~~~~-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~ 278 (547)
||||+|+..++.+++++|+..+... ...+..|..|.||||+|+..|+.+++++|+++|.+.+.... ..|.||||+|+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~~g~t~L~~A~~ 159 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI-KSGRSPLIHAVE 159 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TTCCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc-cCCCcHHHHHHH
Confidence 9999999999999999999544321 24667889999999999999999999999999988876542 369999999999
Q ss_pred cCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhcc
Q 008977 279 SGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRL 355 (547)
Q Consensus 279 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~~ 355 (547)
.|+.+++++|++.+.+. +..|..|+||||+|+..++.+ +...+++.|++++.+|.+|+||||+|+..+..
T Consensus 160 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~------~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~ 229 (241)
T 1k1a_A 160 NNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLP------LVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 229 (241)
T ss_dssp TTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHH------HHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHH------HHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcH
Confidence 99999999999998886 556999999999999999864 44567788999999999999999999988654
No 23
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-37 Score=293.61 Aligned_cols=224 Identities=21% Similarity=0.285 Sum_probs=169.8
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCH-HHHHHHHhhCC
Q 008977 77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSV-DVAKILIVADP 155 (547)
Q Consensus 77 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~ 155 (547)
++|.++.+||+.||..|+.++|++|++.+++...+ ....++..+..|.||||.|+..++. .++++|++.|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~--------~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga 77 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED--------AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL 77 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------------CCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc--------ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC
Confidence 46777889999999999999999999987653221 1223566788999999999988875 48899999999
Q ss_pred CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCC
Q 008977 156 HVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGW 235 (547)
Q Consensus 156 ~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~ 235 (547)
+++ ..|.+|.||||+|+..|+.+++++|++.+++++..+..|.||+|.|+..++.++++.|++. +..++.+|..|+
T Consensus 78 dvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~---g~~~n~~d~~g~ 153 (269)
T 4b93_B 78 GVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS---NAKPNKKDLSGN 153 (269)
T ss_dssp CTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCTTCC
T ss_pred CCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC---CCCCCCCCCCCC
Confidence 987 7899999999999999999999999999999999999999999999999999999999944 344677899999
Q ss_pred cHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcC
Q 008977 236 TPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLD 315 (547)
Q Consensus 236 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 315 (547)
||||+|+..|+.+++++|+++|++++... ..|.||||+|+..|+.++|++|++++++. +.+|.+|+||||+|+++++
T Consensus 154 TpL~~A~~~g~~~~v~~Ll~~gadvn~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 154 TPLIYACSGGHHELVALLLQHGASINASN--NKGNTALHEAVIEKHVFVVELLLLHGASV-QVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp CHHHHHHHTTCGGGHHHHHHTTCCTTCBC--TTSCBHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCSGGGSCTTCH
T ss_pred CHHHHHHHCCCHHHHHHHHHCCCCCCccc--cCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHhCCc
Confidence 99999999999999999999999887654 46999999999999999999999999886 6679999999999987765
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=7e-36 Score=281.29 Aligned_cols=231 Identities=19% Similarity=0.208 Sum_probs=207.6
Q ss_pred hhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHH
Q 008977 25 LESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKF 104 (547)
Q Consensus 25 ~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~ 104 (547)
++++.++.+|.|+| |+|+.. |+.++ +++|++ .+..++..+..|.||||+|+..|+.+++++|+++
T Consensus 2 ~~~~~~~~~g~t~L-------~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 2 MNFKMEHQNKRSPL-------HAAAEA--GHVDI--CHMLVQ----AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp CCCCCSSCCSCCHH-------HHHHHH--TCHHH--HHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred CCcccccCCCCCHH-------HHHHHc--CcHHH--HHHHHH----cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 45667788899999 999999 99999 999977 5777888999999999999999999999999998
Q ss_pred hhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHH
Q 008977 105 AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKI 184 (547)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L 184 (547)
+.+ ++.++..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|
T Consensus 67 g~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 130 (237)
T 3b7b_A 67 GAL----------------VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130 (237)
T ss_dssp TCC----------------CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCC----------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 876 5567889999999999999999999999998544447889999999999999999999999
Q ss_pred HHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceec
Q 008977 185 LQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIG 264 (547)
Q Consensus 185 l~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 264 (547)
+++|++++..+..|.||||+|+..++.+++++|++++ ..++.+|..|.||||+|+..|+.+++++|+++|++.+..+
T Consensus 131 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d 207 (237)
T 3b7b_A 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK---CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207 (237)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred HHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccC
Confidence 9999999999999999999999999999999999544 4466779999999999999999999999999999887654
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHhhc
Q 008977 265 GKDRNMTALHLAAASGHIMVVDRILSS 291 (547)
Q Consensus 265 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 291 (547)
..|.||||+|+.+|+.+.+..+++.
T Consensus 208 --~~g~t~l~~A~~~~~~~~~~~l~~~ 232 (237)
T 3b7b_A 208 --KEGETPLQCASLNSQVWSALQMSKA 232 (237)
T ss_dssp --TTSCCHHHHSCTTCHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999777666653
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.3e-36 Score=280.94 Aligned_cols=215 Identities=22% Similarity=0.199 Sum_probs=152.9
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC
Q 008977 80 AKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY 159 (547)
Q Consensus 80 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~ 159 (547)
..+.||||.|++.|+.+.++.|++.+... ++.++..|.||||+|+..|+.+++++|++.|++++
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~- 67 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSL---------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN- 67 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGG---------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhh---------------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-
Confidence 45667777777777777777777654321 44556777777777777777777777777777665
Q ss_pred CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHh
Q 008977 160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH 239 (547)
Q Consensus 160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh 239 (547)
..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++ +...+.+|..|.||||
T Consensus 68 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~ 144 (231)
T 3aji_A 68 DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG---GANPDAKDHYDATAMH 144 (231)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHH
T ss_pred CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCcHHH
Confidence 5667777777777777777777777777777777777777777777777777777777733 2334556677777777
Q ss_pred HHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCc
Q 008977 240 HAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDL 316 (547)
Q Consensus 240 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 316 (547)
+|+..|+.+++++|+++|.+++..+ ..|.||||+|+..|+.+++++|++++++. +.+|..|+||||+|+..++.
T Consensus 145 ~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~ 218 (231)
T 3aji_A 145 RAAAKGNLKMVHILLFYKASTNIQD--TEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGGLGL 218 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCCC--TTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHSCHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCccccC--CCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhhHHH
Confidence 7777777777777777776665443 34777777777777777777777777665 45577777777777666553
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.7e-35 Score=277.56 Aligned_cols=215 Identities=24% Similarity=0.246 Sum_probs=193.8
Q ss_pred ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY 207 (547)
Q Consensus 128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~ 207 (547)
+..+++|||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 82 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence 45688999999999999999999999888777889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHH
Q 008977 208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDR 287 (547)
Q Consensus 208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 287 (547)
.++.+++++|+++ +...+.+|..|.||||+|+..|+.+++++|+++|.+++... ..|.||||+|+..|+.+++++
T Consensus 83 ~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~ 157 (231)
T 3aji_A 83 AGXDEIVKALLVK---GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD--HYDATAMHRAAAKGNLKMVHI 157 (231)
T ss_dssp HTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCcHHHHHHHcCCHHHHHH
Confidence 9999999999944 34466788999999999999999999999999998876543 469999999999999999999
Q ss_pred HhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhc
Q 008977 288 ILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCR 354 (547)
Q Consensus 288 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~ 354 (547)
|++.+.+. +.+|..|+||||+|+..++.+ +...+++.|++++.+|.+|+||||+|++.+.
T Consensus 158 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~------~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 217 (231)
T 3aji_A 158 LLFYKAST-NIQDTEGNTPLHLACDEERVE------EAKFLVTQGASIYIENKEEKTPLQVAKGGLG 217 (231)
T ss_dssp HHHTTCCS-CCCCTTSCCHHHHHHHTTCHH------HHHHHHHTTCCSCCCCTTSCCHHHHSCHHHH
T ss_pred HHhcCCCc-cccCCCCCCHHHHHHHCCCHH------HHHHHHHCCCCCCCCCCCCCCHHHHHHhhHH
Confidence 99998876 556999999999999999853 4456678899999999999999999987654
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.9e-35 Score=274.44 Aligned_cols=211 Identities=23% Similarity=0.264 Sum_probs=183.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhC--CCCCC
Q 008977 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVAD--PHVPY 159 (547)
Q Consensus 82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~--~~~~~ 159 (547)
|+||||+|++.|+.++|++|++.+++. .+.++..|.||||+|+..|+.+++++|++.+ ++...
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 66 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSL---------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGG---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccc---------------cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc
Confidence 689999999999999999999987652 3446889999999999999999999999998 56554
Q ss_pred CCCCCCCcHHHHHHHCCCHHHHHHHHHhC--CCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977 160 SANRNNETPLYMAAANGSVEIVAKILQKC--PSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP 237 (547)
Q Consensus 160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~--~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp 237 (547)
..+..|.||||+|+..|+.+++++|+++| ++++..+..|.||||+|+..++.+++++|+++ +...+.+|..|+||
T Consensus 67 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~ 143 (228)
T 2dzn_A 67 YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN---GASVRIKDKFNQIP 143 (228)
T ss_dssp CCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc---CCCccccCCCCCCH
Confidence 47889999999999999999999999998 88888899999999999999999999999944 44466778899999
Q ss_pred HhHHHhcCChHHHHHHhccC-CCcceecCCCCCchHHHHHHHcCCHHHHHHHh-hcCCCccccccCCCCcHHHHHHHh
Q 008977 238 LHHAAYSGRELTSKLLLDHD-KSAAFIGGKDRNMTALHLAAASGHIMVVDRIL-SSCDGCCAKVDERGWNFLHFAMVS 313 (547)
Q Consensus 238 Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll-~~~~~~~~~~d~~g~t~Lh~A~~~ 313 (547)
||+|+..|+.+++++|+++| .+.+.. +..|.||||+|+..|+.+++++|+ +.+.+. +.+|.+|+||||+|+..
T Consensus 144 L~~A~~~~~~~~v~~Ll~~g~~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~-~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 144 LHRAASVGSLKLIELLCGLGKSAVNWQ--DKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-CCBCTTSCBGGGGCSST
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccCc--CCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCcHHHHHHHH
Confidence 99999999999999999998 665544 346999999999999999999999 777765 56799999999999654
No 28
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4e-34 Score=266.62 Aligned_cols=216 Identities=22% Similarity=0.191 Sum_probs=191.0
Q ss_pred CceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCC
Q 008977 54 GEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNT 133 (547)
Q Consensus 54 g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t 133 (547)
|+.++ +++|++ .+.......|..|.||||+|+..|+.+++++|++++.+ ++.++..|.|
T Consensus 2 g~~~~--i~~Ll~---~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t 60 (223)
T 2f8y_A 2 DAPAV--ISDFIY---QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD----------------ANIQDNMGRT 60 (223)
T ss_dssp ---CC--EETTEE---TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCC
T ss_pred CcHHH--HHHHHH---cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC----------------CCCcCCCCCC
Confidence 67778 888844 44444455689999999999999999999999999876 5667899999
Q ss_pred HhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHH
Q 008977 134 PLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEV 213 (547)
Q Consensus 134 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~ 213 (547)
|||+|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++
T Consensus 61 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 140 (223)
T 2f8y_A 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 140 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHH
Confidence 99999999999999999999885555789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCC
Q 008977 214 IKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCD 293 (547)
Q Consensus 214 v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 293 (547)
+++|+++ +...+.+|..|.||||+|+..|+.+++++|+++|++.+..+ ..|.||||+|++.|+.+++++|++++.
T Consensus 141 v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 141 AVVLLKN---GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD--HMDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp HHHHHHT---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC--TTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHc---CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccc--ccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 9999954 44567789999999999999999999999999999887654 459999999999999999999999887
Q ss_pred Cc
Q 008977 294 GC 295 (547)
Q Consensus 294 ~~ 295 (547)
..
T Consensus 216 ~~ 217 (223)
T 2f8y_A 216 VR 217 (223)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 29
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-35 Score=286.98 Aligned_cols=239 Identities=20% Similarity=0.183 Sum_probs=201.1
Q ss_pred cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV 157 (547)
Q Consensus 78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~ 157 (547)
.+..|.||||.||..|+.++|++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 99 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGAD----------------INYANVDGLTALHQACIDDNVDMVKFLVENGANI 99 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCC----------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 455788999999999999999999999876 5678999999999999999999999999999998
Q ss_pred CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977 158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP 237 (547)
Q Consensus 158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp 237 (547)
+ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++.++ ...+...+..+..+.++
T Consensus 100 ~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll--~~~~~~~~~~~~~~~~~ 176 (299)
T 1s70_B 100 N-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV--NRQGVDIEAARKEEERI 176 (299)
T ss_dssp T-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHH--HHHTCCHHHHHHHHHHH
T ss_pred C-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHH--hhcCCCchhhhhhhhhH
Confidence 7 77899999999999999999999999999999999999999999999999999999988 33333344444444444
Q ss_pred HhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcc
Q 008977 238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLL 317 (547)
Q Consensus 238 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~ 317 (547)
++. .++.++..+...... .+..|.||||+|+..|+.+++++|++.+++. +.+|..|+||||+|+..++.+
T Consensus 177 ~~~--------~~~~~l~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~ 246 (299)
T 1s70_B 177 MLR--------DARQWLNSGHINDVR-HAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEE 246 (299)
T ss_dssp HHH--------HHHHHHHHTCCCCCC-CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHH
T ss_pred HHH--------HHHHHHhccCcchhh-hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHH
Confidence 433 344555555444333 2347999999999999999999999998876 556999999999999999864
Q ss_pred cccceeeecccccccccccccccCCCchhHHHHH
Q 008977 318 QSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAA 351 (547)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~ 351 (547)
+...+++.|++++.+|..|+||||+|++
T Consensus 247 ------~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 247 ------ACRILVENLCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp ------HHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred ------HHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 4456778899999999999999999864
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=271.22 Aligned_cols=221 Identities=22% Similarity=0.238 Sum_probs=200.7
Q ss_pred cccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCC
Q 008977 76 FQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADP 155 (547)
Q Consensus 76 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~ 155 (547)
+..|..|.||||.|+..|+.+++++|++.+.+ ++.++..|.||||+|+..|+.+++++|++.++
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD----------------VRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCC----------------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 45688899999999999999999999998876 56678999999999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCC
Q 008977 156 HVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGW 235 (547)
Q Consensus 156 ~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~ 235 (547)
+.....+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++ +...+.++..|.
T Consensus 67 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~g~ 143 (240)
T 3eu9_A 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK---GQDVDMMDQNGM 143 (240)
T ss_dssp CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSC
T ss_pred cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc---CCCccccCCCCC
Confidence 98877777899999999999999999999999999999999999999999999999999999954 344667899999
Q ss_pred cHHhHHHhcCC-hHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhc
Q 008977 236 TPLHHAAYSGR-ELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSL 314 (547)
Q Consensus 236 tpLh~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 314 (547)
||||+|+..++ .+++++|++.+.+.+..... .|.||||+|+..|+.+++++|++++++. +.+|..|+||||+|++.+
T Consensus 144 t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~ 221 (240)
T 3eu9_A 144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY-HKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRK 221 (240)
T ss_dssp CHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTT-TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCTTSCBHHHHHHHTT
T ss_pred cHHHHHHHhCChHHHHHHHHhcCCCcchhhcc-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcC
Confidence 99999997766 89999999999988766542 6999999999999999999999999876 567999999999999999
Q ss_pred Ccc
Q 008977 315 DLL 317 (547)
Q Consensus 315 ~~~ 317 (547)
+.+
T Consensus 222 ~~~ 224 (240)
T 3eu9_A 222 NVW 224 (240)
T ss_dssp CHH
T ss_pred cHH
Confidence 864
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=281.07 Aligned_cols=209 Identities=29% Similarity=0.325 Sum_probs=148.0
Q ss_pred HHHHHHHHcCCchHHHHHhhhhhhh--------hhcccCCCceeccCCccceeEeeecCCcee-cchhhHHHHHhhcCCc
Q 008977 3 RKLFEAAAKGDIEPFREIARDELES--------IVTDLMNNTVLYGNITASHLTLQTEEGEIV-SVSTKFVEHILDLSPS 73 (547)
Q Consensus 3 ~~L~~A~~~g~~~~l~~ll~~~~~~--------~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~-~~~~~~L~~~~~~~~~ 73 (547)
++|+.|+++|+.++++.|++.+.+. +..+..|.|+| |.|+.. ++.+ + ++.|++ .+.
T Consensus 13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L-------~~a~~~--~~~~~~--v~~Ll~----~Ga 77 (269)
T 4b93_B 13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPL-------CQCPKC--APAQKR--LAKVPA----SGL 77 (269)
T ss_dssp HHHHHHHHTTCHHHHHHHHTCC-------------------------------------------------------CCC
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHH-------HHHHHh--CCHHHH--HHHHHH----CCC
Confidence 5799999999999999999986542 23344455555 888877 5543 4 555544 677
Q ss_pred cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977 74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA 153 (547)
Q Consensus 74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ 153 (547)
+++.+|.+|+||||+|+..|+.++|++|++.+++ ++.++..|.||+|.|+..++.+++++|++.
T Consensus 78 dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~----------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 141 (269)
T 4b93_B 78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN----------------AGARNADQAVPLHLACQQGHFQVVKCLLDS 141 (269)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC----------------cCccCCCCCCccccccccChHHHHHHHHHC
Confidence 7888888888888888888888888888888766 456677888888888888888888888888
Q ss_pred CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccC
Q 008977 154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKY 233 (547)
Q Consensus 154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~ 233 (547)
|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++ ..++.+|.+
T Consensus 142 g~~~n-~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G---ad~~~~d~~ 217 (269)
T 4b93_B 142 NAKPN-KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG---ASVQVLNKR 217 (269)
T ss_dssp TCCSC-CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT---CCSCCCCTT
T ss_pred CCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCC
Confidence 88876 67888888888888888888888888888888888888888888888888888888888443 345667888
Q ss_pred CCcHHhHHHhcCC
Q 008977 234 GWTPLHHAAYSGR 246 (547)
Q Consensus 234 g~tpLh~A~~~g~ 246 (547)
|+||||+|+++++
T Consensus 218 G~TpL~~A~~~~~ 230 (269)
T 4b93_B 218 QRTAVDCAEQNSK 230 (269)
T ss_dssp SCCSGGGSCTTCH
T ss_pred CCCHHHHHHhCCc
Confidence 8888888877664
No 32
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.6e-34 Score=270.32 Aligned_cols=213 Identities=21% Similarity=0.188 Sum_probs=188.2
Q ss_pred CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC--CCCCC-CCCCCchHHHHHHh
Q 008977 131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC--PSPAH-EGPDGKTALHAAVY 207 (547)
Q Consensus 131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~--~~~~~-~~~~g~t~Lh~A~~ 207 (547)
|+||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 7899999999999999999999999888778999999999999999999999999999 44444 77899999999999
Q ss_pred cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHH
Q 008977 208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDR 287 (547)
Q Consensus 208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 287 (547)
.++.+++++|++++. ....+..+..|.||||+|+..|+.+++++|+++|.+.+..+ ..|.||||+|+..|+.+++++
T Consensus 82 ~~~~~~~~~Ll~~g~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPL-KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD--KFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HCCHHHHHHHHSSSS-CCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC--TTSCCHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHhCCC-CcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccC--CCCCCHHHHHHHcCCHHHHHH
Confidence 999999999995442 14467778999999999999999999999999998876554 469999999999999999999
Q ss_pred HhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccc-cccccccccccCCCchhHHHHHh
Q 008977 288 ILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTV-RNSRLLIAEDVNGNTPLHVVAAV 352 (547)
Q Consensus 288 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~-~~~~~~~~~d~~G~T~Lh~A~~~ 352 (547)
|++.++...+.+|..|+||||+|+..++.+ +...++ +.|++++.+|.+|+||||+|.+.
T Consensus 159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~------~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGD------AAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHTTTCCCSCCCCTTSCCHHHHHHHTTCHH------HHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred HHhcCcccccCcCCCCCCHHHHHHHcCCHH------HHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 999996666778999999999999999864 334455 78999999999999999998643
No 33
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.2e-34 Score=280.24 Aligned_cols=255 Identities=20% Similarity=0.135 Sum_probs=187.0
Q ss_pred hhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhc
Q 008977 28 IVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKK 107 (547)
Q Consensus 28 ~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~ 107 (547)
+..+.+|+||| |+|+.. |+.++ +++|++ ....+..++.+|..|.||||+|+..|+.++|++|+++|++
T Consensus 3 ~~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~-~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 70 (282)
T 1oy3_D 3 GYVTEDGDTAL-------HLAVIH--QHEPF--LDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70 (282)
T ss_dssp CCCCTTCCCHH-------HHHHHT--TCHHH--HHHHHH-HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CccCCCCCcHH-------HHHHHc--CCHHH--HHHHHh-cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 35567888888 999999 99999 999987 2334445888999999999999999999999999999887
Q ss_pred CCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC------------CCCCCCcHHHHHHHC
Q 008977 108 QPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS------------ANRNNETPLYMAAAN 175 (547)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~------------~~~~g~tpL~~A~~~ 175 (547)
++.++..|.||||+|+..|+.+++++|+++++..... ....+.++++.++..
T Consensus 71 ----------------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (282)
T 1oy3_D 71 ----------------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134 (282)
T ss_dssp ----------------SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------
T ss_pred ----------------CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcccc
Confidence 5677999999999999999999999999988764311 123456777777665
Q ss_pred CCH-HHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhcc-CCCcHHhHHHhcCChHHHHHH
Q 008977 176 GSV-EIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDK-YGWTPLHHAAYSGRELTSKLL 253 (547)
Q Consensus 176 g~~-~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~L 253 (547)
+.. .....+...+.+++..+..|.||||+|+..|+.+++++|++++ ..++.++. .|+||||+|+..|+.+++++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L 211 (282)
T 1oy3_D 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG---ADLNKPEPTCGRTPLHLAVEAQAASVLELL 211 (282)
T ss_dssp ---------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT---CCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred ccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCcCHHHHHHHcCCHHHHHHH
Confidence 543 3444555667788889999999999999999999999999443 34555554 599999999999999999999
Q ss_pred hccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCc
Q 008977 254 LDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDL 316 (547)
Q Consensus 254 l~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 316 (547)
+++|++++..+ ..|.||||+|+..|+.+++++|++++++. +.+|.+|+|||++|....+.
T Consensus 212 l~~gad~~~~d--~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 212 LKAGADPTARM--YGGRTPLGSALLRPNPILARLLRAHGAPE-PEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp HHTTCCTTCCC--TTSCCHHHHHHTSSCHHHHHHHHHTTCCC-CCCC----------------
T ss_pred HHcCCCCcccc--cCCCCHHHHHHHcCCcHHHHHHHHcCCCc-CcCCCcccccccccCCcccc
Confidence 99999887654 46999999999999999999999999996 56699999999999877653
No 34
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1e-34 Score=280.99 Aligned_cols=211 Identities=16% Similarity=0.151 Sum_probs=97.0
Q ss_pred cCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHH
Q 008977 11 KGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAA 90 (547)
Q Consensus 11 ~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa 90 (547)
..+.+.++.++.++ +++..+.+|.||| |+|+.. |+.++ +++|++ .+..++.. +|.||||+|+
T Consensus 9 ~~~~~~v~~lL~~~-~~~~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~----~g~~~~~~--~g~t~L~~A~ 70 (285)
T 3kea_A 9 TWKSKQLKSFLSSK-DTFKADVHGHSAS-------YYAIAD--NNVRL--VCTLLN----AGALKNLL--ENEFPLHQAA 70 (285)
T ss_dssp GCCHHHHHHHHHST-TTTCCCTTSCCHH-------HHHHHT--TCHHH--HHHHHH----TTGGGSCC--TTCCHHHHHT
T ss_pred hcCHHHHHHHHHhC-CCCccCCCCCCHH-------HHHHHc--CCHHH--HHHHHh----CCCCCCCC--CCCCHHHHHH
Confidence 33444444433332 3344444444444 555555 55544 444433 23333333 2445555555
Q ss_pred HcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCC-CcHH
Q 008977 91 KKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNN-ETPL 169 (547)
Q Consensus 91 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL 169 (547)
..|+.++|++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..| .|||
T Consensus 71 ~~g~~~~v~~Ll~~ga~----------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L 133 (285)
T 3kea_A 71 TLEDTKIVKILLFSGLD----------------DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSF 133 (285)
T ss_dssp TSSSCHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHH
T ss_pred HcCCHHHHHHHHHCCCC----------------CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHH
Confidence 55555555555554443 23344445555555555555555555555544443 334444 4555
Q ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH-HhHHHhcCChH
Q 008977 170 YMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP-LHHAAYSGREL 248 (547)
Q Consensus 170 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp-Lh~A~~~g~~~ 248 (547)
|+|+..|+.+++++|+++|++.... ..|.||||+|+..|+.+++++|+++ +..++.+|..|+|| ||+|+..|+.+
T Consensus 134 ~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~~L~~A~~~~~~~ 209 (285)
T 3kea_A 134 YHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDY---MTSTNTNNSLLFIPDIKLAIDNKDIE 209 (285)
T ss_dssp HHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHH---HHHTCTTCCCBCCTTHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHc---CCCCCcccCCCCChHHHHHHHcCCHH
Confidence 5555555555555555554443111 1444555555555555555555422 22334444445444 55555555555
Q ss_pred HHHHHhccCCCc
Q 008977 249 TSKLLLDHDKSA 260 (547)
Q Consensus 249 ~v~~Ll~~~~~~ 260 (547)
++++|+++|+++
T Consensus 210 ~v~~Ll~~gad~ 221 (285)
T 3kea_A 210 MLQALFKYDINI 221 (285)
T ss_dssp HHHHHTTSCBCS
T ss_pred HHHHHHHcCCCC
Confidence 555555554443
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=266.04 Aligned_cols=230 Identities=20% Similarity=0.186 Sum_probs=200.8
Q ss_pred cccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCC
Q 008977 30 TDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQP 109 (547)
Q Consensus 30 ~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~ 109 (547)
.+..|.++| |.|+.. |+.++ +++|++ .+..++..+..|.||||+|+..|+.+++++|++++.+..
T Consensus 5 ~d~~~~~~l-------~~A~~~--g~~~~--~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~ 69 (240)
T 3eu9_A 5 IDDYSTWDI-------VKATQY--GIYER--CRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69 (240)
T ss_dssp CSCGGGCCH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred cccccchHH-------HHHHHc--CChHH--HHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch
Confidence 344667777 999999 99999 999977 567788899999999999999999999999999887632
Q ss_pred chhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCC
Q 008977 110 RDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCP 189 (547)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 189 (547)
...+..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|+++|+
T Consensus 70 ---------------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 133 (240)
T 3eu9_A 70 ---------------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133 (240)
T ss_dssp ---------------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ---------------hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCC
Confidence 2345669999999999999999999999999887 678999999999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHhcCC-HHHHHHHHcccccchhhhhhcc-CCCcHHhHHHhcCChHHHHHHhccCCCcceecCCC
Q 008977 190 SPAHEGPDGKTALHAAVYTYP-TEVIKQLFLHEEKRSLTAVRDK-YGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKD 267 (547)
Q Consensus 190 ~~~~~~~~g~t~Lh~A~~~~~-~~~v~~Ll~~~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 267 (547)
+++..+..|.||||+|+..++ .+++++|+..+ ...+..+. .|.||||+|+..|+.+++++|+++|++++..+ .
T Consensus 134 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~ 208 (240)
T 3eu9_A 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN---VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN--I 208 (240)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT---CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBC--T
T ss_pred CccccCCCCCcHHHHHHHhCChHHHHHHHHhcC---CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC--C
Confidence 999999999999999997666 78889888433 33555565 89999999999999999999999998887654 4
Q ss_pred CCchHHHHHHHcCCHHHHHHHhhcCCCc
Q 008977 268 RNMTALHLAAASGHIMVVDRILSSCDGC 295 (547)
Q Consensus 268 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 295 (547)
.|.||||+|++.|+.+++++|++.+++.
T Consensus 209 ~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 209 KGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 6999999999999999999999987653
No 36
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-35 Score=290.39 Aligned_cols=269 Identities=13% Similarity=0.075 Sum_probs=200.7
Q ss_pred CceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhh-hhhhHHHHHhcccccCCC
Q 008977 54 GEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQR-GVKSAERQMLGMTNEEQN 132 (547)
Q Consensus 54 g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~ 132 (547)
.+.++ +++|++ .+..++..+..|.|+++ |+.++|+.|+++|.++...... ........--........
T Consensus 30 ~~~dl--v~~ll~----~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 98 (327)
T 1sw6_A 30 FTHDL--TSDFLS----SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQ 98 (327)
T ss_dssp CCTTC--CCSTTT----SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------------------------
T ss_pred hcCch--HHHHhh----CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCcc
Confidence 34566 788855 78899999999999988 9999999999999764221000 000000000000111223
Q ss_pred CHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC--
Q 008977 133 TPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP-- 210 (547)
Q Consensus 133 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~-- 210 (547)
+.+|.|+..+..+++++|++.|.+++...|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~ 178 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence 446889999999999999999999985489999999999999999999999999999999999999999999999988
Q ss_pred -HHHHHHHHcccccchhhhhhccCCCcHHhHHHh----cCChHHHHHHhcc--------------------CCCcceecC
Q 008977 211 -TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY----SGRELTSKLLLDH--------------------DKSAAFIGG 265 (547)
Q Consensus 211 -~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~--------------------~~~~~~~~~ 265 (547)
.++++.|++ ......+.+|..|+||||+|+. .|+.++++.|++. |.+++. .
T Consensus 179 ~~~~~~~ll~--~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~--~ 254 (327)
T 1sw6_A 179 DSGTFEALLD--YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND--K 254 (327)
T ss_dssp HTTCHHHHHH--HHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred cHHHHHHHHH--hhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc--c
Confidence 577777773 3334577889999999999999 8999999999987 444443 3
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCch
Q 008977 266 KDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTP 345 (547)
Q Consensus 266 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~ 345 (547)
+..|.||||.|+. +++|++.+ .+.+|.+|+||||+|++.++.+ +...|++.|++++.+|.+|+||
T Consensus 255 ~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~------~v~~Ll~~Gad~~~~d~~G~Tp 319 (327)
T 1sw6_A 255 NGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNIS------IVDALLDYGADPFIANKSGLRP 319 (327)
T ss_dssp -----CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHH------HHHHHHHTTCCTTCCCTTSCCG
T ss_pred cccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHH------HHHHHHHcCCCCcccCCCCCCH
Confidence 4569999999986 88999883 4667999999999999999863 4456778899999999999999
Q ss_pred hHHHHHh
Q 008977 346 LHVVAAV 352 (547)
Q Consensus 346 Lh~A~~~ 352 (547)
||+|++.
T Consensus 320 L~~A~~~ 326 (327)
T 1sw6_A 320 VDFGAGL 326 (327)
T ss_dssp GGGTCC-
T ss_pred HHHHHhc
Confidence 9999865
No 37
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=8.4e-35 Score=283.98 Aligned_cols=269 Identities=19% Similarity=0.193 Sum_probs=212.6
Q ss_pred HHHHcCCchHHHHHhhhhhhhhhcc--cCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCCh
Q 008977 7 EAAAKGDIEPFREIARDELESIVTD--LMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDS 84 (547)
Q Consensus 7 ~A~~~g~~~~l~~ll~~~~~~~~~~--~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t 84 (547)
.+++.+..+.++.++....+..... ......-+.+.||||.|+.. |+.++ +++|++ .+..++..|..|.|
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~g~t 75 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSS--GDTEE--VLRLLE----RGADINYANVDGLT 75 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHH--TCHHH--HHHHHH----HCCCTTCBCTTCCB
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHc--CCHHH--HHHHHH----cCCCCcccCCCCCC
Confidence 4778888888988888754332111 11111112333444999999 99999 999977 46778889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCC
Q 008977 85 PLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRN 164 (547)
Q Consensus 85 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~ 164 (547)
|||+|+..|+.++|++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..
T Consensus 76 ~L~~A~~~g~~~~v~~Ll~~ga~----------------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~ 138 (299)
T 1s70_B 76 ALHQACIDDNVDMVKFLVENGAN----------------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSE 138 (299)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC----------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCC
Confidence 99999999999999999999877 56779999999999999999999999999999987 77999
Q ss_pred CCcHHHHHHHCCCHHHHHHHHHh-CCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh
Q 008977 165 NETPLYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY 243 (547)
Q Consensus 165 g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~ 243 (547)
|.||||+|+..|+.++++.++.. +.+++..+..+.++++ ..+..++ ..........+..|.||||+|+.
T Consensus 139 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l--~~~~~~~~~~~~~g~t~L~~A~~ 208 (299)
T 1s70_B 139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWL--NSGHINDVRHAKSGGTALHVAAA 208 (299)
T ss_dssp SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHH--HHTCCCCCCCTTTCCCHHHHHHH
T ss_pred CCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHH--hccCcchhhhcCCCCCHHHHHHH
Confidence 99999999999999999988865 4443332222233332 2233444 22233334467889999999999
Q ss_pred cCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHh
Q 008977 244 SGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVS 313 (547)
Q Consensus 244 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 313 (547)
.|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++++++. +.+|..|+||||+|++.
T Consensus 209 ~g~~~~v~~Ll~~g~d~~~~d--~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 209 KGYTEVLKLLIQARYDVNIKD--YDGWTPLHAAAHWGKEEACRILVENLCDM-EAVNKVGQTAFDVADED 275 (299)
T ss_dssp HTCHHHHHHHHTTTCCTTCCC--TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTTTSCCSG
T ss_pred CCcHHHHHHHHHcCCCCCCcC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHH
Confidence 999999999999998887654 46999999999999999999999999886 56699999999999653
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.7e-33 Score=262.36 Aligned_cols=216 Identities=19% Similarity=0.161 Sum_probs=194.1
Q ss_pred cCCchHHHHHhhhhhhhhhc-ccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHH
Q 008977 11 KGDIEPFREIARDELESIVT-DLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLA 89 (547)
Q Consensus 11 ~g~~~~l~~ll~~~~~~~~~-~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~A 89 (547)
.|+.+++++|+++|.+++.. +.+|.|+| |+|+.. |+.++ +++|++ .+..++..|..|.||||+|
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~----~g~~~~~~~~~g~t~L~~A 65 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETAL-------HLAARY--SRSDA--AKRLLE----ASADANIQDNMGRTPLHAA 65 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchH-------HHHHHc--CCHHH--HHHHHH----cCCCCCCcCCCCCCHHHHH
Confidence 37889999999999888764 67899999 999999 99999 999977 5777888999999999999
Q ss_pred HHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHH
Q 008977 90 AKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPL 169 (547)
Q Consensus 90 a~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 169 (547)
+..|+.+++++|+++++.. ++..+..|.||||+|+..|+.+++++|++.+++++ ..+..|.|||
T Consensus 66 ~~~~~~~~v~~Ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L 129 (223)
T 2f8y_A 66 VSADAQGVFQILIRNRATD---------------LDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSAL 129 (223)
T ss_dssp HHTTCHHHHHHHHHBTTSC---------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHH
T ss_pred HHcCCHHHHHHHHHcCCCC---------------cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHH
Confidence 9999999999999987632 55678999999999999999999999999999987 7789999999
Q ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHH
Q 008977 170 YMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELT 249 (547)
Q Consensus 170 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~ 249 (547)
|+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++++. ..+.+|..|.||||+|+..++.++
T Consensus 130 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~A~~~~~~~i 206 (223)
T 2f8y_A 130 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA---NRDITDHMDRLPRDIAQERMHHDI 206 (223)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC---CCccccccCCCHHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999995543 456779999999999999999999
Q ss_pred HHHHhccCCCc
Q 008977 250 SKLLLDHDKSA 260 (547)
Q Consensus 250 v~~Ll~~~~~~ 260 (547)
+++|+++|...
T Consensus 207 ~~~L~~~g~~~ 217 (223)
T 2f8y_A 207 VRLLDEYNLVR 217 (223)
T ss_dssp HHHHHHTTCSS
T ss_pred HHHHHHcCCCc
Confidence 99999998753
No 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.2e-33 Score=273.49 Aligned_cols=226 Identities=19% Similarity=0.191 Sum_probs=191.3
Q ss_pred cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977 74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA 153 (547)
Q Consensus 74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ 153 (547)
.++.+|..|.||||+|+..|+.++|++|++++++ ++.+ +|.||||+|+..|+.+++++|+++
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL----------------KNLL--ENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG----------------GSCC--TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----------------CCCC--CCCCHHHHHHHcCCHHHHHHHHHC
Confidence 4788999999999999999999999999999876 3333 489999999999999999999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCC-chHHHHHHhcCCHHHHHHHHcccccchhhhhhcc
Q 008977 154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDG-KTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDK 232 (547)
Q Consensus 154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g-~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~ 232 (547)
|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..++.+++++|++++... .+.
T Consensus 85 ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~~~ 158 (285)
T 3kea_A 85 GLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-----FDL 158 (285)
T ss_dssp TCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT-----CCC
T ss_pred CCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc-----ccc
Confidence 99987 688899999999999999999999999999999999999 89999999999999999999554322 233
Q ss_pred -CCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchH-HHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHH
Q 008977 233 -YGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTA-LHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFA 310 (547)
Q Consensus 233 -~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tp-L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 310 (547)
.|.||||+|+..|+.+++++|+++|++++.. +..|.|| ||+|+..|+.+++++|++++++... .| +.|
T Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~--~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~-~~-------~~a 228 (285)
T 3kea_A 159 AILLSCIHITIKNGHVDMMILLLDYMTSTNTN--NSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS-AN-------LEN 228 (285)
T ss_dssp STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT--CCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT-TT-------GGG
T ss_pred cCCccHHHHHHHcChHHHHHHHHHcCCCCCcc--cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC-CC-------hhh
Confidence 8999999999999999999999999877654 3468897 9999999999999999999988633 34 244
Q ss_pred HHhcCcccccceeeecccccccccccccc
Q 008977 311 MVSLDLLQSSGLVIKHPTVRNSRLLIAED 339 (547)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~d 339 (547)
+..++. .+...+++.|.+++..+
T Consensus 229 ~~~~~~------~iv~~Ll~~g~~~~~~~ 251 (285)
T 3kea_A 229 VLLDDA------EIAKMIIEKHVEYKSDS 251 (285)
T ss_dssp GTTTCH------HHHHHHHHHHHHHTTCT
T ss_pred hhcCCH------HHHHHHHHcCCCCCCcc
Confidence 555554 24455666676655443
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.6e-32 Score=257.50 Aligned_cols=196 Identities=24% Similarity=0.319 Sum_probs=169.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHH-hhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC-
Q 008977 81 KGDSPLHLAAKKGDAAIVKFLIKF-AKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP- 158 (547)
Q Consensus 81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~- 158 (547)
.|+||||+|++.|+.++|++|++. +.+ ++.+|..|.||||+|+..|+.+++++|++.+++..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 65 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE----------------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC----------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc
Confidence 589999999999999999999997 554 66789999999999999999999999999998763
Q ss_pred ---CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCC-------------CCchHHHHHHhcCCHHHHHHHHcccc
Q 008977 159 ---YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP-------------DGKTALHAAVYTYPTEVIKQLFLHEE 222 (547)
Q Consensus 159 ---~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~-------------~g~t~Lh~A~~~~~~~~v~~Ll~~~~ 222 (547)
...|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++
T Consensus 66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-- 143 (232)
T 2rfa_A 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-- 143 (232)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT--
T ss_pred ccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC--
Confidence 35677999999999999999999999999999988665 699999999999999999999944
Q ss_pred cchhhhhhccCCCcHHhHHHhcCChHHH----HHHhccCCCcce----ecCCCCCchHHHHHHHcCCHHHHHHHhhcCCC
Q 008977 223 KRSLTAVRDKYGWTPLHHAAYSGRELTS----KLLLDHDKSAAF----IGGKDRNMTALHLAAASGHIMVVDRILSSCDG 294 (547)
Q Consensus 223 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v----~~Ll~~~~~~~~----~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 294 (547)
+..++.+|..|+||||+|+..|+.+++ ++|+++|++... ...+..|.||||+|++.|+.+++++|+++++.
T Consensus 144 -ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 144 -GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp -TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 445677889999999999999998887 899998886641 12344699999999999999999999998765
Q ss_pred c
Q 008977 295 C 295 (547)
Q Consensus 295 ~ 295 (547)
.
T Consensus 223 ~ 223 (232)
T 2rfa_A 223 I 223 (232)
T ss_dssp C
T ss_pred c
Confidence 4
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.3e-33 Score=265.54 Aligned_cols=217 Identities=22% Similarity=0.206 Sum_probs=172.1
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCC
Q 008977 77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPH 156 (547)
Q Consensus 77 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~ 156 (547)
.+|.+|.||||+|+..|+.+++++|++.+..... .++.++..|.||||+|+..|+.+++++|+++|++
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 70 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLA------------FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CC------------CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHH------------HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4688999999999999999999999987654211 1567788999999999999999999999999988
Q ss_pred CCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCC------CCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhh
Q 008977 157 VPYSANRNNETPLYMAAANGSVEIVAKILQKCPSP------AHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVR 230 (547)
Q Consensus 157 ~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~------~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 230 (547)
++ ..+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..++.+++++|+++ +..++.+
T Consensus 71 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~ 146 (236)
T 1ikn_D 71 PE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL---GADVNAQ 146 (236)
T ss_dssp SC-CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH---TCCTTCC
T ss_pred CC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCC
Confidence 86 67889999999999999999999999998763 45677889999999999999999999843 3445566
Q ss_pred cc-CCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCcc-ccccCCCCcHHH
Q 008977 231 DK-YGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCC-AKVDERGWNFLH 308 (547)
Q Consensus 231 d~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~-~~~d~~g~t~Lh 308 (547)
+. .|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++++++.. ..++..|.|+.+
T Consensus 147 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~ 224 (236)
T 1ikn_D 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT--YQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224 (236)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC--TTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc--CCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHh
Confidence 66 88999999999999999999999888776553 358899999999999999999998888654 345666777655
Q ss_pred HHH
Q 008977 309 FAM 311 (547)
Q Consensus 309 ~A~ 311 (547)
.+.
T Consensus 225 ~~~ 227 (236)
T 1ikn_D 225 TES 227 (236)
T ss_dssp CC-
T ss_pred hhc
Confidence 443
No 42
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-34 Score=286.40 Aligned_cols=259 Identities=15% Similarity=0.080 Sum_probs=197.3
Q ss_pred cCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcc---ccc----------
Q 008977 11 KGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSV---LFQ---------- 77 (547)
Q Consensus 11 ~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~---~~~---------- 77 (547)
....+.+++|+++|++++..+..|.+++ + |+.++ ++.|++.-- .+.. ...
T Consensus 29 ~~~~dlv~~ll~~ga~i~~~~~~g~~~~-------~-------g~~~~--v~~Ll~~g~-~~~~~~~~~a~~~~~~~~~~ 91 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPLKIMKALPSPVVND-------N-------EQKMK--LEAFLQRLL-FPEIQEMPTSLNNDSSNRNS 91 (327)
T ss_dssp ECCTTCCCSTTTSSCCCEECBCCCCCCC-------H-------HHHHH--HHHHHHHHH-C-------------------
T ss_pred hhcCchHHHHhhCCcccccCCCCCCccc-------C-------chhHH--HHHHHHhcc-CCccccchHhhhcccccccc
Confidence 4455678899999999999998999988 4 78888 999976321 1111 000
Q ss_pred -cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcc-cccCCCCHhHHHHHcCCHHHHHHHHhhCC
Q 008977 78 -ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGM-TNEEQNTPLHEAVRLRSVDVAKILIVADP 155 (547)
Q Consensus 78 -~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~ 155 (547)
......+.+|.|+..+..+++++|++.+.+ ++. +|..|.||||+|+..|+.+++++|+++|+
T Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~d----------------vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga 155 (327)
T 1sw6_A 92 EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN----------------LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS 155 (327)
T ss_dssp ------------CHHHHHHHHHHHCTTSCCC----------------SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccCCccchhHHHHHhhHHHHHHHHHhcCCC----------------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 111123345888888888999999888776 667 79999999999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHCCC---HHHHHHHHHhC-CCCCCCCCCCchHHHHHHh----cCCHHHHHHHHcccc-----
Q 008977 156 HVPYSANRNNETPLYMAAANGS---VEIVAKILQKC-PSPAHEGPDGKTALHAAVY----TYPTEVIKQLFLHEE----- 222 (547)
Q Consensus 156 ~~~~~~~~~g~tpL~~A~~~g~---~~iv~~Ll~~~-~~~~~~~~~g~t~Lh~A~~----~~~~~~v~~Ll~~~~----- 222 (547)
+++ .+|..|.||||+|+..|+ .++++.|++.+ ++++..+..|.||||+|+. .++.++++.|++...
T Consensus 156 d~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~ 234 (327)
T 1sw6_A 156 NRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234 (327)
T ss_dssp CTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred CCC-CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhc
Confidence 987 889999999999999999 68888888887 6788899999999999999 899999999985422
Q ss_pred ------------cchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhh
Q 008977 223 ------------KRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS 290 (547)
Q Consensus 223 ------------~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 290 (547)
.+..++.++..|.||||.|+. +++|++++ ++. .+..|+||||+|++.|+.+++++|++
T Consensus 235 ~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~--~n~--~d~~G~TpLh~A~~~g~~~~v~~Ll~ 304 (327)
T 1sw6_A 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM--LNA--QDSNGDTCLNIAARLGNISIVDALLD 304 (327)
T ss_dssp GGGCCEEEC----------------CHHHHHCS------HHHHHHHT--TTC--CCTTSCCHHHHHHHHCCHHHHHHHHH
T ss_pred ccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC--CCC--CCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 145677789999999999996 89999884 332 34579999999999999999999999
Q ss_pred cCCCccccccCCCCcHHHHHHHhc
Q 008977 291 SCDGCCAKVDERGWNFLHFAMVSL 314 (547)
Q Consensus 291 ~~~~~~~~~d~~g~t~Lh~A~~~~ 314 (547)
++++. +.+|.+|+||||+|+++|
T Consensus 305 ~Gad~-~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 305 YGADP-FIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp TTCCT-TCCCTTSCCGGGGTCC--
T ss_pred cCCCC-cccCCCCCCHHHHHHhcC
Confidence 99886 667999999999998653
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=4.2e-33 Score=262.16 Aligned_cols=219 Identities=19% Similarity=0.156 Sum_probs=187.4
Q ss_pred hcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcC
Q 008977 29 VTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQ 108 (547)
Q Consensus 29 ~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ 108 (547)
..+.+|+|+| |+|+.. |+.++ +++|++.....+..++..|..|.||||+|+..|+.++|++|++++++
T Consensus 3 ~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~- 70 (236)
T 1ikn_D 3 QLTEDGDSFL-------HLAIIH--EEKAL--TMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD- 70 (236)
T ss_dssp ----CCCCTT-------HHHHHT--TCSSS--SSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-
T ss_pred cCCCCCCchh-------HHHHHc--CChhH--HHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence 3556788888 999999 99999 99997754444557889999999999999999999999999998876
Q ss_pred CchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC-----CCCCCCCCCcHHHHHHHCCCHHHHHH
Q 008977 109 PRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV-----PYSANRNNETPLYMAAANGSVEIVAK 183 (547)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~iv~~ 183 (547)
++.++..|.||||+|+..|+.+++++|++.+++. ....+..|.||||+|+..|+.+++++
T Consensus 71 ---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 135 (236)
T 1ikn_D 71 ---------------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 135 (236)
T ss_dssp ---------------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred ---------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHH
Confidence 5677899999999999999999999999998642 34678899999999999999999999
Q ss_pred HHHhCCCCCCCCC-CCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcce
Q 008977 184 ILQKCPSPAHEGP-DGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAF 262 (547)
Q Consensus 184 Ll~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 262 (547)
|+++|++++..+. .|.||||+|+..++.+++++|+++ +..++.+|..|+||||+|+..|+.+++++|+++|++...
T Consensus 136 Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 212 (236)
T 1ikn_D 136 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212 (236)
T ss_dssp HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT---TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS
T ss_pred HHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh
Confidence 9999999999987 999999999999999999999954 445677899999999999999999999999999998775
Q ss_pred ecCCCCCchHHHHHH
Q 008977 263 IGGKDRNMTALHLAA 277 (547)
Q Consensus 263 ~~~~~~g~tpL~~A~ 277 (547)
...+..|.||.+.+.
T Consensus 213 ~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 213 MLPESEDEESYDTES 227 (236)
T ss_dssp SCCCCCTTTCCCCC-
T ss_pred cCCccchHHHHhhhc
Confidence 555556777766544
No 44
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.98 E-value=1.1e-32 Score=265.31 Aligned_cols=226 Identities=17% Similarity=0.092 Sum_probs=174.1
Q ss_pred cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHc---CCHHHHHHH
Q 008977 74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL---RSVDVAKIL 150 (547)
Q Consensus 74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~iv~~L 150 (547)
..+..|..|.||||.|++.|+.++|+.|++.+.+...++.. .....+..|.||||+|+.. |+.+++++|
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~L 76 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTD--------SEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTS--------GGGSCTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCC--------cccccCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence 34567889999999999999999999999987643322110 0113578999999999987 999999999
Q ss_pred HhhCCCCC----------CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCC--------------CCchHHHHHH
Q 008977 151 IVADPHVP----------YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGP--------------DGKTALHAAV 206 (547)
Q Consensus 151 l~~~~~~~----------~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~g~t~Lh~A~ 206 (547)
++.|++.. ...|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+
T Consensus 77 l~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~ 156 (273)
T 2pnn_A 77 LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA 156 (273)
T ss_dssp HHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHH
T ss_pred HHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHH
Confidence 99875421 12567899999999999999999999999999998886 7999999999
Q ss_pred hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCC---------hHHHHHHhccCCCcce-----ecCCCCCchH
Q 008977 207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR---------ELTSKLLLDHDKSAAF-----IGGKDRNMTA 272 (547)
Q Consensus 207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~~-----~~~~~~g~tp 272 (547)
..++.+++++|++....+..++.+|..|+||||+|+..|+ .+++++|+++|++.+. ...+..|.||
T Consensus 157 ~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~Tp 236 (273)
T 2pnn_A 157 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236 (273)
T ss_dssp HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH
T ss_pred HcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCH
Confidence 9999999999994211455677889999999999999988 7999999999887753 1234579999
Q ss_pred HHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHH
Q 008977 273 LHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFL 307 (547)
Q Consensus 273 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 307 (547)
||+|++.|+.+++++|+++++.........+++|-
T Consensus 237 L~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 237 LALAASSGKIGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 99999999999999999999855555566665553
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.98 E-value=2.7e-31 Score=243.17 Aligned_cols=194 Identities=24% Similarity=0.278 Sum_probs=173.5
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC
Q 008977 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP 158 (547)
Q Consensus 79 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ 158 (547)
+..+.||||.|+..|+.+.++.|++.+... ++..|..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ---------------VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCC---------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCC---------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 356889999999999999999999876522 56778999999999999999999999999999987
Q ss_pred CCCCCCCCcHHHHHHHCCCHHHHHHHH-HhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977 159 YSANRNNETPLYMAAANGSVEIVAKIL-QKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP 237 (547)
Q Consensus 159 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp 237 (547)
..+..|.||||+|+..|+.+++++|+ ..+++++..+..|.||||+|+..++.+++++|++ ..+...+.+|..|+||
T Consensus 67 -~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~~g~t~ 143 (201)
T 3hra_A 67 -LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE--DGREDIDFQNDFGYTA 143 (201)
T ss_dssp -CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHH--HCCCCTTCCCTTSCCH
T ss_pred -CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCcCCCCCCCCCH
Confidence 78899999999999999999999999 5557889999999999999999999999999993 3335677889999999
Q ss_pred HhHHHhcCC-----hHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcC
Q 008977 238 LHHAAYSGR-----ELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSC 292 (547)
Q Consensus 238 Lh~A~~~g~-----~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 292 (547)
||+|+..++ .+++++|+++|++++..+ ..|.||||+|++.|+.+++++|+++|
T Consensus 144 L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 144 LIEAVGLREGNQLYQDIVKLLMENGADQSIKD--NSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHhccchhhHHHHHHHHHHCCCCCCccC--CCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999988 999999999998887654 45999999999999999999999865
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=6.8e-32 Score=257.18 Aligned_cols=199 Identities=19% Similarity=0.131 Sum_probs=168.4
Q ss_pred CCChHHHHHHHcCCHH----HHHHHHHHhhcCCchhhhhhhhHHHHHhcc----cccCCCCHhHHHHHc---CCHHHHHH
Q 008977 81 KGDSPLHLAAKKGDAA----IVKFLIKFAKKQPRDLQRGVKSAERQMLGM----TNEEQNTPLHEAVRL---RSVDVAKI 149 (547)
Q Consensus 81 ~g~t~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~----~~~~g~t~Lh~A~~~---g~~~iv~~ 149 (547)
.|+||||.|+..|+.+ ++++|++.+.+ ++. +|..|.||||+|+.. |+.+++++
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~----------------i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~ 64 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY----------------LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC----------------TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cccccccCCCCCCCHHHHHHHccccchHHHHHH
Confidence 3789999999999998 55666666655 444 689999999999999 99999999
Q ss_pred HHhhCCCCCCC----------CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCC-------------CchHHHHHH
Q 008977 150 LIVADPHVPYS----------ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-------------GKTALHAAV 206 (547)
Q Consensus 150 Ll~~~~~~~~~----------~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~-------------g~t~Lh~A~ 206 (547)
|++.|++.... .|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+
T Consensus 65 Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~ 144 (256)
T 2etb_A 65 LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA 144 (256)
T ss_dssp HHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHH
T ss_pred HHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHH
Confidence 99988765422 3467999999999999999999999999999998876 999999999
Q ss_pred hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh--cCChH-------HHHHHhccCCCcce-----ecCCCCCchH
Q 008977 207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY--SGREL-------TSKLLLDHDKSAAF-----IGGKDRNMTA 272 (547)
Q Consensus 207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~--~g~~~-------~v~~Ll~~~~~~~~-----~~~~~~g~tp 272 (547)
..|+.+++++|++....+..++.+|..|+||||+|+. .++.+ ++++|+++|++... ...+..|.||
T Consensus 145 ~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tp 224 (256)
T 2etb_A 145 CTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTP 224 (256)
T ss_dssp HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCH
T ss_pred HcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCH
Confidence 9999999999994211555677889999999999999 77887 99999999887721 2234469999
Q ss_pred HHHHHHcCCHHHHHHHhhcCCCc
Q 008977 273 LHLAAASGHIMVVDRILSSCDGC 295 (547)
Q Consensus 273 L~~A~~~g~~~~v~~Ll~~~~~~ 295 (547)
||+|+..|+.+++++|++++++.
T Consensus 225 L~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 225 LKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhCCCCC
Confidence 99999999999999999987654
No 47
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=1.8e-31 Score=250.22 Aligned_cols=202 Identities=22% Similarity=0.242 Sum_probs=173.5
Q ss_pred CccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHH
Q 008977 42 ITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAER 121 (547)
Q Consensus 42 ~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 121 (547)
.||||+|+.. |+.++ +++|++ ..+..++.+|..|.||||+|+..|+.++|++|++++++...
T Consensus 4 ~t~L~~A~~~--g~~~~--v~~Ll~---~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----------- 65 (232)
T 2rfa_A 4 ESPLLLAAKE--NDVQA--LSKLLK---FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF----------- 65 (232)
T ss_dssp TCHHHHHHHT--TCHHH--HHHHHT---TTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG-----------
T ss_pred CCHHHHHHHc--CCHHH--HHHHHH---hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc-----------
Confidence 3444999999 99999 999955 45888999999999999999999999999999999876311
Q ss_pred HHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC------------CCCCCcHHHHHHHCCCHHHHHHHHHhCC
Q 008977 122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA------------NRNNETPLYMAAANGSVEIVAKILQKCP 189 (547)
Q Consensus 122 ~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~------------~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 189 (547)
...+.+|..|.||||+|+..|+.+++++|+++|++++... +..|.||||+|+..|+.+++++|+++|+
T Consensus 66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 145 (232)
T 2rfa_A 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA 145 (232)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 0024567899999999999999999999999999887432 2379999999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHhcCCHHHH----HHHHcccccch---hhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcc
Q 008977 190 SPAHEGPDGKTALHAAVYTYPTEVI----KQLFLHEEKRS---LTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAA 261 (547)
Q Consensus 190 ~~~~~~~~g~t~Lh~A~~~~~~~~v----~~Ll~~~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 261 (547)
+++..|..|.||||+|+..++.+++ ++|++++.... ..+.+|..|+||||+|+..|+.+++++|+++|+...
T Consensus 146 ~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp CTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 9999999999999999999999988 88885554332 225789999999999999999999999999986554
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=1.1e-31 Score=255.74 Aligned_cols=209 Identities=21% Similarity=0.210 Sum_probs=174.3
Q ss_pred CccceeEeeecCCceecchhhHHHHHhhcCCccccc----cccCCChHHHHHHHc---CCHHHHHHHHHHhhcCCchhhh
Q 008977 42 ITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQ----ADAKGDSPLHLAAKK---GDAAIVKFLIKFAKKQPRDLQR 114 (547)
Q Consensus 42 ~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~----~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~ 114 (547)
+||||+|+.. |+.+. ++.+++.+...+..++. .|..|.||||+|+.. |+.++|++|++.+++......
T Consensus 3 ~t~L~~A~~~--g~~~~--v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~- 77 (256)
T 2etb_A 3 RDRLFSVVSR--GVPEE--LTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP- 77 (256)
T ss_dssp HHHHHHHHHH--TCGGG--GTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC-
T ss_pred ccHHHHHHHc--CCHHH--HHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh-
Confidence 4555999999 99998 88887766667778887 899999999999999 999999999999887431000
Q ss_pred hhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCC-------------CCcHHHHHHHCCCHHHH
Q 008977 115 GVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRN-------------NETPLYMAAANGSVEIV 181 (547)
Q Consensus 115 ~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~iv 181 (547)
........+|..|.||||+|+..|+.+++++|+++|++++ ..+.. |.||||+|+..|+.+++
T Consensus 78 ----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v 152 (256)
T 2etb_A 78 ----LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152 (256)
T ss_dssp ----GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHH
T ss_pred ----hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence 0000011245779999999999999999999999999987 45544 99999999999999999
Q ss_pred HHHHH---hCCCCCCCCCCCchHHHHHHh--cCCHH-------HHHHHHcccccch----hhhhhccCCCcHHhHHHhcC
Q 008977 182 AKILQ---KCPSPAHEGPDGKTALHAAVY--TYPTE-------VIKQLFLHEEKRS----LTAVRDKYGWTPLHHAAYSG 245 (547)
Q Consensus 182 ~~Ll~---~~~~~~~~~~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~~~~~~----~~~~~d~~g~tpLh~A~~~g 245 (547)
++|++ +|++++..|..|+||||+|+. .++.+ ++++|++++.... ..+.+|..|+||||+|+..|
T Consensus 153 ~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g 232 (256)
T 2etb_A 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232 (256)
T ss_dssp HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred HHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhC
Confidence 99999 999999999999999999999 88888 9999995443321 01778999999999999999
Q ss_pred ChHHHHHHhccCCCc
Q 008977 246 RELTSKLLLDHDKSA 260 (547)
Q Consensus 246 ~~~~v~~Ll~~~~~~ 260 (547)
+.+++++|+++|.+.
T Consensus 233 ~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 233 KIEIFRHILQREFSG 247 (256)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCC
Confidence 999999999988654
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=2.7e-31 Score=255.62 Aligned_cols=214 Identities=22% Similarity=0.272 Sum_probs=176.1
Q ss_pred hhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCcccc----ccccCCChHHHHHHHc---CCHHH
Q 008977 25 LESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLF----QADAKGDSPLHLAAKK---GDAAI 97 (547)
Q Consensus 25 ~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~----~~~~~g~t~Lh~Aa~~---g~~~~ 97 (547)
...+..+..|+|+| |+|+.. |+.++ ++.|++.....+..++ ..|..|.||||+|+.. |+.++
T Consensus 4 a~~~~~d~~g~t~L-------~~A~~~--g~~~~--v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~ 72 (273)
T 2pnn_A 4 AGEKPPRLYDRRSI-------FDAVAQ--SNCQE--LESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72 (273)
T ss_dssp -------CCCHHHH-------HHHHHT--TCSST--TTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHH
T ss_pred ccCCCCCcccchHH-------HHHHHc--CCHHH--HHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHH
Confidence 33445667888888 999999 99999 9999886554555544 4688999999999987 99999
Q ss_pred HHHHHHHhhcCCchhhhhhhhHHHHHhcc----cccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC----------
Q 008977 98 VKFLIKFAKKQPRDLQRGVKSAERQMLGM----TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR---------- 163 (547)
Q Consensus 98 v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~----~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~---------- 163 (547)
|++|++++++... .+.+++. +|..|.||||+|+..|+.+++++|+++|++++ ..+.
T Consensus 73 v~~Ll~~ga~~~~---------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~ 142 (273)
T 2pnn_A 73 IALLLDVARKTDS---------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGR 142 (273)
T ss_dssp HHHHHHHHHHTTC---------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSS
T ss_pred HHHHHHhhccccc---------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-cccccccccccccc
Confidence 9999999876422 1122333 56789999999999999999999999999987 4444
Q ss_pred ----CCCcHHHHHHHCCCHHHHHHHHH---hCCCCCCCCCCCchHHHHHHhcCC---------HHHHHHHHcccccch--
Q 008977 164 ----NNETPLYMAAANGSVEIVAKILQ---KCPSPAHEGPDGKTALHAAVYTYP---------TEVIKQLFLHEEKRS-- 225 (547)
Q Consensus 164 ----~g~tpL~~A~~~g~~~iv~~Ll~---~~~~~~~~~~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~-- 225 (547)
.|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++ .+++++|++++....
T Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~ 222 (273)
T 2pnn_A 143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222 (273)
T ss_dssp CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccc
Confidence 79999999999999999999999 999999999999999999999888 799999995443321
Q ss_pred --hhhhhccCCCcHHhHHHhcCChHHHHHHhccCCC
Q 008977 226 --LTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKS 259 (547)
Q Consensus 226 --~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 259 (547)
..+.+|..|+||||+|+..|+.+++++|+++|+.
T Consensus 223 ~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258 (273)
T ss_dssp CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence 1135899999999999999999999999999983
No 50
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=7.8e-31 Score=240.11 Aligned_cols=189 Identities=21% Similarity=0.235 Sum_probs=170.1
Q ss_pred ccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHH
Q 008977 43 TASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQ 122 (547)
Q Consensus 43 ~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 122 (547)
||||.|+.. |+.+. ++.+ +...+..++..|..|.||||+|+..|+.++|++|++++++
T Consensus 7 ~~L~~A~~~--g~~~~--v~~l---l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------- 64 (201)
T 3hra_A 7 GALLEAANQ--RDTKK--VKEI---LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD--------------- 64 (201)
T ss_dssp THHHHHHHT--TCHHH--HHHH---HTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---------------
T ss_pred cHHHHHHHh--ccHHH--HHHH---HHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------
Confidence 444999999 99888 8888 4456668899999999999999999999999999999877
Q ss_pred HhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC-CCCCCCCCCCchH
Q 008977 123 MLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKC-PSPAHEGPDGKTA 201 (547)
Q Consensus 123 ~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~-~~~~~~~~~g~t~ 201 (547)
++.++..|.||||+|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|+++| ++++..+..|.||
T Consensus 65 -~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 143 (201)
T 3hra_A 65 -INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA 143 (201)
T ss_dssp -TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCH
T ss_pred -CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCH
Confidence 56778999999999999999999999996655434478999999999999999999999999999 8999999999999
Q ss_pred HHHHHhcCC-----HHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccC
Q 008977 202 LHAAVYTYP-----TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257 (547)
Q Consensus 202 Lh~A~~~~~-----~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ 257 (547)
||+|+..++ .+++++|++++ ..++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 144 L~~A~~~~~~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 144 LIEAVGLREGNQLYQDIVKLLMENG---ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHSSCCSHHHHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHhccchhhHHHHHHHHHHCC---CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999998 99999999544 446778999999999999999999999999875
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=2.2e-30 Score=229.21 Aligned_cols=158 Identities=31% Similarity=0.365 Sum_probs=118.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCC
Q 008977 84 SPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANR 163 (547)
Q Consensus 84 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 163 (547)
++|+.||+.|+.++|+.|++.|++ ++.+|..|.||||+|+..++.+++++|++.|++++ .+|.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad----------------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~ 68 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD----------------VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDS 68 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhcc
Confidence 467888888888888888887766 56677888888888888888888888888887776 6777
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh
Q 008977 164 NNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY 243 (547)
Q Consensus 164 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~ 243 (547)
.|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+++ +..++.+|.+|+||||+|+.
T Consensus 69 ~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~ 145 (169)
T 4gpm_A 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK---GADVNTSDSDGRTPLDLARE 145 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHH
Confidence 888888888888888888888888888877777778888888777777777777743 33455667777777777777
Q ss_pred cCChHHHHHHhccCCCcc
Q 008977 244 SGRELTSKLLLDHDKSAA 261 (547)
Q Consensus 244 ~g~~~~v~~Ll~~~~~~~ 261 (547)
.|+.+++++|+++|++.+
T Consensus 146 ~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 146 HGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp TTCHHHHHHHHTC-----
T ss_pred cCCHHHHHHHHHCCCCcC
Confidence 777777777777776553
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=6.7e-31 Score=232.48 Aligned_cols=160 Identities=26% Similarity=0.401 Sum_probs=119.2
Q ss_pred CHHHHHHHHcCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCCccccccccC
Q 008977 2 DRKLFEAAAKGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAK 81 (547)
Q Consensus 2 ~~~L~~A~~~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~ 81 (547)
.++|+.|+++|+.++++.|+++|++++.++.+|+||| |+|+.. ++.++ ++++++ .+.+++.+|.+
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l-------~~a~~~--~~~~~--~~~ll~----~gad~~~~d~~ 69 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPL-------HHAAEN--GHKEV--VKLLIS----KGADVNAKDSD 69 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-------HHHHHT--TCHHH--HHHHHH----TTCCTTCCCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-------HHHHHc--CCHHH--HHHHHh----cccchhhhccC
Confidence 3568888888888888888888888887777777777 888777 77777 777755 56667777777
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC
Q 008977 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA 161 (547)
Q Consensus 82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~ 161 (547)
|.||||+|+..|+.++|++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++ .+
T Consensus 70 g~TpLh~A~~~g~~~~v~~Ll~~gad----------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~ 132 (169)
T 4gpm_A 70 GRTPLHHAAENGHKEVVKLLISKGAD----------------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TS 132 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCcCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-cc
Confidence 88888888888888888888777765 55667777888888888888888888887777765 66
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCC
Q 008977 162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAH 193 (547)
Q Consensus 162 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~ 193 (547)
|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 133 d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 133 DSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 77777888888888888888888877777653
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=7.8e-31 Score=250.44 Aligned_cols=205 Identities=17% Similarity=0.091 Sum_probs=169.2
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHH----HhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHH---HcCCHHHHHHHH
Q 008977 79 DAKGDSPLHLAAKKGDAAIVKFLIK----FAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAV---RLRSVDVAKILI 151 (547)
Q Consensus 79 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~---~~g~~~iv~~Ll 151 (547)
+..|+|+||.|++.|+.+.|+.|++ .+.+.... -...+..|.||||+|+ +.|+.+++++|+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~------------~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll 69 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE------------EFREPSTGKTCLPKALLNLSAGRNDTIPILL 69 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG------------GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh------------hhhccCCCCcHHHHHHHHhhcCCHHHHHHHH
Confidence 4568999999999999997666665 55542110 0122477999999999 779999999999
Q ss_pred hhCCCC----------CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC--------------CCCchHHHHHHh
Q 008977 152 VADPHV----------PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG--------------PDGKTALHAAVY 207 (547)
Q Consensus 152 ~~~~~~----------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~--------------~~g~t~Lh~A~~ 207 (547)
+.+++. ....|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus 70 ~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~ 149 (260)
T 3jxi_A 70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC 149 (260)
T ss_dssp HHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHH
T ss_pred HhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHH
Confidence 986432 12345589999999999999999999999999999988 689999999999
Q ss_pred cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCC---------hHHHHHHhccCCCcce-----ecCCCCCchHH
Q 008977 208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGR---------ELTSKLLLDHDKSAAF-----IGGKDRNMTAL 273 (547)
Q Consensus 208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~~-----~~~~~~g~tpL 273 (547)
.|+.+++++|++.+..+..++.+|..|+||||+|+..++ .+++++|+++|++++. ...+..|.|||
T Consensus 150 ~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL 229 (260)
T 3jxi_A 150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL 229 (260)
T ss_dssp TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH
T ss_pred cCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH
Confidence 999999999995221556678889999999999999887 6999999999987732 23345799999
Q ss_pred HHHHHcCCHHHHHHHhhcCCCc
Q 008977 274 HLAAASGHIMVVDRILSSCDGC 295 (547)
Q Consensus 274 ~~A~~~g~~~~v~~Ll~~~~~~ 295 (547)
|+|++.|+.+++++|++++++.
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCCCc
Confidence 9999999999999999998765
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=5.1e-30 Score=244.76 Aligned_cols=209 Identities=21% Similarity=0.195 Sum_probs=173.6
Q ss_pred ccceeEeeecCCceecchhhHHHHHhhcCCccccccc----cCCChHHHHHH---HcCCHHHHHHHHHHhhcCCchhhhh
Q 008977 43 TASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQAD----AKGDSPLHLAA---KKGDAAIVKFLIKFAKKQPRDLQRG 115 (547)
Q Consensus 43 ~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~----~~g~t~Lh~Aa---~~g~~~~v~~Ll~~~~~~~~~~~~~ 115 (547)
|+||.|+.. |+.+. ++.|++.+...+..++..+ ..|.||||+|+ +.|+.++|++|++.+++......
T Consensus 7 ~~L~~A~~~--g~~~~--v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~-- 80 (260)
T 3jxi_A 7 PILFDIVSR--GSPDG--LEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE-- 80 (260)
T ss_dssp HHHHHHHHH--TCGGG--GTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHHh--CCHHH--HHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh--
Confidence 344999999 99999 9988886666677776555 67999999999 78999999999999876432100
Q ss_pred hhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCC--------------CCCCcHHHHHHHCCCHHHH
Q 008977 116 VKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSAN--------------RNNETPLYMAAANGSVEIV 181 (547)
Q Consensus 116 ~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~iv 181 (547)
.....++..|..|.||||+|+..|+.+++++|+++|++++ ..+ ..|.||||+|+..|+.+++
T Consensus 81 ---~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 156 (260)
T 3jxi_A 81 ---FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV 156 (260)
T ss_dssp ---HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHH
T ss_pred ---hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCCHHHH
Confidence 0001134456689999999999999999999999999987 455 6899999999999999999
Q ss_pred HHHHH---hCCCCCCCCCCCchHHHHHHhcCC---------HHHHHHHHcccccch----hhhhhccCCCcHHhHHHhcC
Q 008977 182 AKILQ---KCPSPAHEGPDGKTALHAAVYTYP---------TEVIKQLFLHEEKRS----LTAVRDKYGWTPLHHAAYSG 245 (547)
Q Consensus 182 ~~Ll~---~~~~~~~~~~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~----~~~~~d~~g~tpLh~A~~~g 245 (547)
++|++ .|++++..|..|+||||+|+..++ .+++++|++++.... ..+.+|..|+||||+|+..|
T Consensus 157 ~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g 236 (260)
T 3jxi_A 157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236 (260)
T ss_dssp HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred HHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcC
Confidence 99999 999999999999999999998877 689999995443321 11678999999999999999
Q ss_pred ChHHHHHHhccCCCcc
Q 008977 246 RELTSKLLLDHDKSAA 261 (547)
Q Consensus 246 ~~~~v~~Ll~~~~~~~ 261 (547)
+.+++++|+++|++..
T Consensus 237 ~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 237 KIGIFQHIIRREIADA 252 (260)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCcc
Confidence 9999999999987553
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=2.6e-28 Score=221.58 Aligned_cols=164 Identities=23% Similarity=0.229 Sum_probs=129.0
Q ss_pred cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977 74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA 153 (547)
Q Consensus 74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ 153 (547)
.++.+|..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+..|+.+++++|++.
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 90 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK----------------LEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc----------------cccccccCccHHHHHHHcCCHHHHHHHHHC
Confidence 4566788888888888888888888888888765 456677888888888888888888888888
Q ss_pred CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccC
Q 008977 154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKY 233 (547)
Q Consensus 154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~ 233 (547)
|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++ +..++.+|..
T Consensus 91 g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~ 166 (192)
T 2rfm_A 91 GSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL---GADISARDLT 166 (192)
T ss_dssp TCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCBCTT
T ss_pred CCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCC
Confidence 88776 6777888888888888888888888888888887777788888888877777777777743 3335556777
Q ss_pred CCcHHhHHHhcCChHHHHHHhccC
Q 008977 234 GWTPLHHAAYSGRELTSKLLLDHD 257 (547)
Q Consensus 234 g~tpLh~A~~~g~~~~v~~Ll~~~ 257 (547)
|.||||+|+..|+.+++++|++++
T Consensus 167 g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 167 GLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp SCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcHHHHHHHHhcc
Confidence 777777777777777777777653
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=236.71 Aligned_cols=195 Identities=21% Similarity=0.224 Sum_probs=173.2
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC
Q 008977 80 AKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY 159 (547)
Q Consensus 80 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~ 159 (547)
..+.+++|.|+..|+.+.++.+++.+.+ ..++.+|..|.||||+|+..|+.+++++|++.|+....
T Consensus 74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~--------------~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~ 139 (276)
T 4hbd_A 74 LACRSDAHPELVRRHLVTFRAMSARLLD--------------YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVD 139 (276)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCHHHHH--------------HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTT
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHh--------------hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCC
Confidence 3457889999999999999999886543 34788999999999999999999999999999984444
Q ss_pred CCCCCCCcHHHHHH-----HCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCC
Q 008977 160 SANRNNETPLYMAA-----ANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYG 234 (547)
Q Consensus 160 ~~~~~g~tpL~~A~-----~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g 234 (547)
..+..|.||||+|+ ..++.+++++|++.|.+.+..+..|.||||+|+..|+.+++++|+++ +..++.+|..|
T Consensus 140 ~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~---gad~n~~d~~G 216 (276)
T 4hbd_A 140 KQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC---EADVNVQDDDG 216 (276)
T ss_dssp CCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTS
T ss_pred CCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCCCCCC
Confidence 88999999999999 66889999999999999988999999999999999999999999944 44577789999
Q ss_pred CcHHhHHHhcCChHHHHHHhc-cCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCC
Q 008977 235 WTPLHHAAYSGRELTSKLLLD-HDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCD 293 (547)
Q Consensus 235 ~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 293 (547)
+||||+|+..|+.+++++|++ .|.+++..+ ..|.||||+|+..|+.+++++|+++..
T Consensus 217 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d--~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 217 STALMCACEHGHKEIAGLLLAVPSCDISLTD--RDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTSTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCCCCCcCcC--CCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 999999999999999999999 888877654 469999999999999999999998753
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=9.3e-29 Score=237.91 Aligned_cols=191 Identities=20% Similarity=0.236 Sum_probs=169.2
Q ss_pred ccceeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHH
Q 008977 43 TASHLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQ 122 (547)
Q Consensus 43 ~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 122 (547)
+++|.|+.. ++.+. ++.++.... ...++..|.+|.||||+|+..|+.++|++|++.++..
T Consensus 78 ~~l~~a~~~--~~~~~--~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~-------------- 137 (276)
T 4hbd_A 78 SDAHPELVR--RHLVT--FRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK-------------- 137 (276)
T ss_dssp TTCCHHHHH--HHHHH--HHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC--------------
T ss_pred cCCCHHHHH--HHHHH--HHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc--------------
Confidence 344999999 99888 888755221 2347788999999999999999999999999998732
Q ss_pred HhcccccCCCCHhHHHH-----HcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCC
Q 008977 123 MLGMTNEEQNTPLHEAV-----RLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD 197 (547)
Q Consensus 123 ~l~~~~~~g~t~Lh~A~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 197 (547)
++..+..|.||||+|+ ..++.+++++|++.|.... ..+..|.||||+|+..|+.+++++|+++|++++..|..
T Consensus 138 -~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~ 215 (276)
T 4hbd_A 138 -VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD 215 (276)
T ss_dssp -TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred -CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Confidence 5678999999999999 6789999999999997765 77889999999999999999999999999999999999
Q ss_pred CchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccC
Q 008977 198 GKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257 (547)
Q Consensus 198 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ 257 (547)
|.||||+|+..|+.+++++|+. ..+..++.+|..|+||||+|+..|+.+++++|+++.
T Consensus 216 G~TpLh~A~~~g~~~iv~~Ll~--~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 216 GSTALMCACEHGHKEIAGLLLA--VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHT--STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCHHHHHHHCCCHHHHHHHHh--cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999999999999999993 345567788999999999999999999999999875
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1.3e-27 Score=217.02 Aligned_cols=165 Identities=22% Similarity=0.152 Sum_probs=151.8
Q ss_pred HHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchH
Q 008977 122 QMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTA 201 (547)
Q Consensus 122 ~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~ 201 (547)
.+++.+|..|.||||+|+..|+.+++++|++.+++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 104 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP 104 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 3467889999999999999999999999999999876 778899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCC
Q 008977 202 LHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGH 281 (547)
Q Consensus 202 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~ 281 (547)
||+|+..++.+++++|+++ +..++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus 105 L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~ 179 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEH---GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD--LTGLTAEASARIFGR 179 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHT---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC--TTSCBHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC--CCCCCHHHHHHHhCc
Confidence 9999999999999999954 44467789999999999999999999999999998877654 469999999999999
Q ss_pred HHHHHHHhhcC
Q 008977 282 IMVVDRILSSC 292 (547)
Q Consensus 282 ~~~v~~Ll~~~ 292 (547)
.+++++|++.+
T Consensus 180 ~~~v~~Ll~~~ 190 (192)
T 2rfm_A 180 QEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999999864
No 59
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.6e-30 Score=241.29 Aligned_cols=191 Identities=21% Similarity=0.133 Sum_probs=153.1
Q ss_pred cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977 74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA 153 (547)
Q Consensus 74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ 153 (547)
..+..+.+|.||||+|+..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.
T Consensus 13 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 76 (229)
T 2vge_A 13 KARRARLNPLVLLLDAALTGELEVVQQAVKEMND----------------PSQPNEEGITALHNAICGANYSIVDFLITA 76 (229)
T ss_dssp CCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccccchhHHHHHHHHcCCHHHHHHHHhcCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 3445667788899999999999999999998776 566788999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC-CCCchHHHHH--HhcCCHHHHHHHHcccccchhhhhh
Q 008977 154 DPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG-PDGKTALHAA--VYTYPTEVIKQLFLHEEKRSLTAVR 230 (547)
Q Consensus 154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~v~~Ll~~~~~~~~~~~~ 230 (547)
|++++ ..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+| +..++.+++++|++. +...+.+
T Consensus 77 ga~~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~---ga~~~~~ 152 (229)
T 2vge_A 77 GANVN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV---EQSMGLM 152 (229)
T ss_dssp TCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH---HHHTTTS
T ss_pred CCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc---CCCcccc
Confidence 98887 778899999999999999999999999999998876 5899999998 888999999999843 3446667
Q ss_pred ccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHH
Q 008977 231 DKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDR 287 (547)
Q Consensus 231 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 287 (547)
|..|.||++.++..+.. +.|++.|++.+....+..|.||||+|+.+|+.++|+.
T Consensus 153 ~~~~~~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 153 NSGAVYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp GGGEEEESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred cCCchHHHHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 78888888865554433 4667777766555555567777777777777776655
No 60
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=6.6e-28 Score=214.82 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=103.4
Q ss_pred ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCC
Q 008977 83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSAN 162 (547)
Q Consensus 83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ 162 (547)
.||||.|+..|+.+++++|++.+... ++.++..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~ 66 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNL---------------VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILA 66 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGG---------------GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCC
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCccc---------------ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhc
Confidence 46667777777777777666654331 34556666677777777777777777776666655 556
Q ss_pred CCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHH
Q 008977 163 RNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA 242 (547)
Q Consensus 163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~ 242 (547)
..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++ +..++.+|..|.||||+|+
T Consensus 67 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~ 143 (172)
T 3v30_A 67 KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLTTEADSGYTPMDLAV 143 (172)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHH
T ss_pred ccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHH
Confidence 6666777777777777777777766666666666667777777777777777666633 2334555666677777777
Q ss_pred hcCChHHHHHHhccCCCc
Q 008977 243 YSGRELTSKLLLDHDKSA 260 (547)
Q Consensus 243 ~~g~~~~v~~Ll~~~~~~ 260 (547)
..|+.+++++|++++++.
T Consensus 144 ~~~~~~~~~~L~~~~~~~ 161 (172)
T 3v30_A 144 ALGYRKVQQVIENHILKL 161 (172)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHH
Confidence 777777777777666544
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=5.9e-28 Score=212.79 Aligned_cols=157 Identities=20% Similarity=0.188 Sum_probs=103.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC
Q 008977 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA 161 (547)
Q Consensus 82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~ 161 (547)
..||||.|+..|+.+++++|++.+.+ ++.++..|.||||+|+. |+.+++++|++.|++++ ..
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~ 66 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVN----------------VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LK 66 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCC----------------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CC
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCC----------------ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CC
Confidence 45677777777777777777766544 44556667777777776 77777777777776665 55
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHH
Q 008977 162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA 241 (547)
Q Consensus 162 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A 241 (547)
+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++ .....+.+|..|.||||+|
T Consensus 67 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~~g~t~l~~A 144 (162)
T 1ihb_A 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH--TASNVGHRNHKGDTACDLA 144 (162)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--SCCCTTCCCTTSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--cCCCCCCcCCCCCcHHHHH
Confidence 66677777777777777777777777777666666666666666666666666666622 2222345556666666666
Q ss_pred HhcCChHHHHHHhccCC
Q 008977 242 AYSGRELTSKLLLDHDK 258 (547)
Q Consensus 242 ~~~g~~~~v~~Ll~~~~ 258 (547)
+..|+.+++++|+++|+
T Consensus 145 ~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 145 RLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHTTCHHHHHHHHHTC-
T ss_pred HHcCCHHHHHHHHHhCC
Confidence 66666666666666554
No 62
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=1.6e-27 Score=211.17 Aligned_cols=157 Identities=20% Similarity=0.219 Sum_probs=99.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977 81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS 160 (547)
Q Consensus 81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~ 160 (547)
.|.||||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|++++ .
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~ 64 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV----------------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-L 64 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC----------------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-C
Confidence 356777777777777777777766544 44556667777777777777777777777666655 5
Q ss_pred CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhH
Q 008977 161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHH 240 (547)
Q Consensus 161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~ 240 (547)
.+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++ +..++.+|..|.||||+
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~ 141 (167)
T 3v31_A 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES---GADPTIETDSGYNSMDL 141 (167)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHH
Confidence 566667777777777777777777777666666666666666666666666666666532 22234445555555555
Q ss_pred HHhcCChHHHHHHhccC
Q 008977 241 AAYSGRELTSKLLLDHD 257 (547)
Q Consensus 241 A~~~g~~~~v~~Ll~~~ 257 (547)
|+..|+.+++++|++++
T Consensus 142 A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 142 AVALGYRSVQQVIESHL 158 (167)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHH
Confidence 55555555555555543
No 63
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=1.7e-27 Score=212.20 Aligned_cols=170 Identities=20% Similarity=0.129 Sum_probs=147.4
Q ss_pred CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC
Q 008977 131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP 210 (547)
Q Consensus 131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~ 210 (547)
+.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 46899999999999999999999988666889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhh
Q 008977 211 TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS 290 (547)
Q Consensus 211 ~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 290 (547)
.+++++|+++ +...+.+|..|+||||+|+..|+.+++++|+++|++.+..+ ..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~~~~~~~L~~ 156 (172)
T 3v30_A 82 TDIVGLLLER---DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA--DSGYTPMDLAVALGYRKVQQVIEN 156 (172)
T ss_dssp HHHHHHHHTT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC--CCCCCHHHHHHHhCcHHHHHHHHH
Confidence 9999999944 44467789999999999999999999999999998876654 469999999999999999999999
Q ss_pred cCCCccccccCCCCcH
Q 008977 291 SCDGCCAKVDERGWNF 306 (547)
Q Consensus 291 ~~~~~~~~~d~~g~t~ 306 (547)
++++... .+..|.||
T Consensus 157 ~~~~~~~-~~~~~~~p 171 (172)
T 3v30_A 157 HILKLFQ-SNLVPADP 171 (172)
T ss_dssp HHHHHSC-C-------
T ss_pred HHHHHhc-ccCCCCCC
Confidence 9887643 46667665
No 64
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=3.8e-27 Score=209.22 Aligned_cols=159 Identities=23% Similarity=0.307 Sum_probs=107.6
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC
Q 008977 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP 158 (547)
Q Consensus 79 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ 158 (547)
...+.||||.|++.|+.++|++|++++.+ ++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 74 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGAD----------------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 34456777777777777777777777655 44566777777777777777777777777777665
Q ss_pred CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHH
Q 008977 159 YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPL 238 (547)
Q Consensus 159 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpL 238 (547)
..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++++ ...+.+|..|.|||
T Consensus 75 -~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l 150 (169)
T 2y1l_E 75 -AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG---ADVNAQDKFGKTAF 150 (169)
T ss_dssp -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHH
T ss_pred -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHH
Confidence 56667777777777777777777777777777766666777777777666666666666332 23445566666666
Q ss_pred hHHHhcCChHHHHHHhccC
Q 008977 239 HHAAYSGRELTSKLLLDHD 257 (547)
Q Consensus 239 h~A~~~g~~~~v~~Ll~~~ 257 (547)
|+|+..|+.+++++|++.|
T Consensus 151 ~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 151 DISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHhCCHHHHHHHHHcC
Confidence 6666666666666666543
No 65
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=4.4e-27 Score=208.33 Aligned_cols=161 Identities=23% Similarity=0.196 Sum_probs=147.7
Q ss_pred CCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcC
Q 008977 130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTY 209 (547)
Q Consensus 130 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~ 209 (547)
.|.||||.|+..|+.+++++|++.+++++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 58899999999999999999999998876 78899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHh
Q 008977 210 PTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRIL 289 (547)
Q Consensus 210 ~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 289 (547)
+.+++++|+++ +..++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+
T Consensus 81 ~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 81 YTDIVKMLLDC---GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET--DSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp CHHHHHHHHHH---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHC---CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCcHHHHHHHH
Confidence 99999999943 44567789999999999999999999999999998886654 46999999999999999999999
Q ss_pred hcCCCcc
Q 008977 290 SSCDGCC 296 (547)
Q Consensus 290 ~~~~~~~ 296 (547)
+++.+..
T Consensus 156 ~~~~~~~ 162 (167)
T 3v31_A 156 SHLLKLL 162 (167)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9876543
No 66
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.4e-30 Score=259.81 Aligned_cols=239 Identities=15% Similarity=0.075 Sum_probs=161.8
Q ss_pred cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV 157 (547)
Q Consensus 78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~ 157 (547)
.+.+++||||+||+.|+.++|++|++.++.... .+..+..|.||||+|+..|+.+++++|+++|++.
T Consensus 88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-------------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~ 154 (376)
T 2aja_A 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-------------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 154 (376)
T ss_dssp HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-------------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT
T ss_pred cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH-------------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCc
Confidence 345567999999999999999999998763210 1123456778999999999999999999999752
Q ss_pred C--CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCC--CCCCCchHHHHHH-hcCCHHHHHHHHcccccchhhhhhcc
Q 008977 158 P--YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAH--EGPDGKTALHAAV-YTYPTEVIKQLFLHEEKRSLTAVRDK 232 (547)
Q Consensus 158 ~--~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~--~~~~g~t~Lh~A~-~~~~~~~v~~Ll~~~~~~~~~~~~d~ 232 (547)
. ...+.+ .||||+|+..|+.+++++|+++|++++. .+..|.||||+|+ .+|+.+++++|++++ .
T Consensus 155 ~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g---a------- 223 (376)
T 2aja_A 155 IMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP---V------- 223 (376)
T ss_dssp HHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH---H-------
T ss_pred cccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC---C-------
Confidence 1 112223 8999999999999999999999998776 7888999999999 999999999999432 1
Q ss_pred CCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCC---------------------------HHHH
Q 008977 233 YGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGH---------------------------IMVV 285 (547)
Q Consensus 233 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~---------------------------~~~v 285 (547)
.|.||||+|+..|+.+++++|+++|++..... ++++.|+.+|+ .+.+
T Consensus 224 ~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~------~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~ 297 (376)
T 2aja_A 224 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH------DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDI 297 (376)
T ss_dssp HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH------TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHH
T ss_pred ccchHHHHHHHCCCHHHHHHHHhcCccccccc------HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHH
Confidence 27899999999999999999999886653321 23333333333 4455
Q ss_pred HHHhhcCCCc----cccccCCCCcHHHHHHHhcCcccccceeeecccccccccccccccCCCchhHHHHHhhcc
Q 008977 286 DRILSSCDGC----CAKVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSRLLIAEDVNGNTPLHVVAAVCRL 355 (547)
Q Consensus 286 ~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~G~T~Lh~A~~~~~~ 355 (547)
++|++..... .....+.+.||||+|+..|+.+.+ .+|++.+ ..+|..|+|++.+|...++.
T Consensus 298 ~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v------~lLl~~~---~v~~~~~~~~~~~~~~~~~~ 362 (376)
T 2aja_A 298 RFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC------ALLLSIP---SVLALTKANNYYINETGGRL 362 (376)
T ss_dssp HHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHH------HHHTTSH---HHHHSCC-------------
T ss_pred HHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHH------HHHHcCh---HHHHHHHHhccccccccccc
Confidence 5555432110 011234577899999999886432 3444433 56788899998888776543
No 67
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=5.1e-27 Score=206.78 Aligned_cols=159 Identities=23% Similarity=0.264 Sum_probs=142.3
Q ss_pred cCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhc
Q 008977 129 EEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYT 208 (547)
Q Consensus 129 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~ 208 (547)
+...||||.|+..|+.+++++|++.+++++ ..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA 80 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 346799999999999999999999999886 778999999999999 999999999999999999999999999999999
Q ss_pred CCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCc-ceecCCCCCchHHHHHHHcCCHHHHHH
Q 008977 209 YPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSA-AFIGGKDRNMTALHLAAASGHIMVVDR 287 (547)
Q Consensus 209 ~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~g~tpL~~A~~~g~~~~v~~ 287 (547)
++.+++++|+++ +..++.+|..|+||||+|+..|+.+++++|+++|++. +.. +..|.||||+|+..|+.+++++
T Consensus 81 ~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~g~t~l~~A~~~~~~~~~~~ 155 (162)
T 1ihb_A 81 GFLDTLQTLLEF---QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR--NHKGDTACDLARLYGRNEVVSL 155 (162)
T ss_dssp TCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC--CTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCc--CCCCCcHHHHHHHcCCHHHHHH
Confidence 999999999944 3456778999999999999999999999999999874 333 3469999999999999999999
Q ss_pred HhhcCCC
Q 008977 288 ILSSCDG 294 (547)
Q Consensus 288 Ll~~~~~ 294 (547)
|+++|++
T Consensus 156 Ll~~GAd 162 (162)
T 1ihb_A 156 MQANGAG 162 (162)
T ss_dssp HHHTC--
T ss_pred HHHhCCC
Confidence 9998864
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.8e-26 Score=204.79 Aligned_cols=160 Identities=24% Similarity=0.269 Sum_probs=144.1
Q ss_pred cccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHH
Q 008977 127 TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV 206 (547)
Q Consensus 127 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~ 206 (547)
....+.++|+.|++.|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 35667899999999999999999999999987 77899999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHH
Q 008977 207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD 286 (547)
Q Consensus 207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 286 (547)
..++.+++++|+++ +...+.+|..|.||||+|+..|+.+++++|+++|++.+..+ ..|.||||+|+..|+.++++
T Consensus 89 ~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~A~~~~~~~~~~ 163 (169)
T 2y1l_E 89 LFGHLEIVEVLLKN---GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD--KFGKTAFDISIDNGNEDLAE 163 (169)
T ss_dssp HTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHhCCHHHHH
Confidence 99999999999944 34466788999999999999999999999999998876553 46999999999999999999
Q ss_pred HHhhcC
Q 008977 287 RILSSC 292 (547)
Q Consensus 287 ~Ll~~~ 292 (547)
+|++.|
T Consensus 164 ~L~~~G 169 (169)
T 2y1l_E 164 ILQKLN 169 (169)
T ss_dssp HHHTC-
T ss_pred HHHHcC
Confidence 999864
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=3e-26 Score=199.87 Aligned_cols=150 Identities=24% Similarity=0.251 Sum_probs=103.9
Q ss_pred ChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCC
Q 008977 83 DSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSAN 162 (547)
Q Consensus 83 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ 162 (547)
.||||.|++.|+.+++++|++.+.+. + .+..|.||||+|+..|+.+++++|++.|++++ ..+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~----------------~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~ 64 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPF----------------T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ART 64 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCC----------------C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCC----------------C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCC
Confidence 46777777777777777777776542 1 36667777777777777777777777777765 566
Q ss_pred CCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHH
Q 008977 163 RNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAA 242 (547)
Q Consensus 163 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~ 242 (547)
..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++ +..++.+|..|.||||+|+
T Consensus 65 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~ 141 (153)
T 1awc_B 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY---GADVHTQSKFCKTAFDISI 141 (153)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHH
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHH
Confidence 7777777777777777777777777777777776777777777777777777766633 2334455666666666666
Q ss_pred hcCChHHHHHH
Q 008977 243 YSGRELTSKLL 253 (547)
Q Consensus 243 ~~g~~~~v~~L 253 (547)
..|+.+++++|
T Consensus 142 ~~~~~~i~~~L 152 (153)
T 1awc_B 142 DNGNEDLAEIL 152 (153)
T ss_dssp HTTCHHHHHHH
T ss_pred HcCCHHHHHHh
Confidence 66666666654
No 70
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=8e-27 Score=206.24 Aligned_cols=161 Identities=25% Similarity=0.251 Sum_probs=128.1
Q ss_pred cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV 157 (547)
Q Consensus 78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~ 157 (547)
.|..|.||||.|++.|+.++++.|++.+... ++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 68 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN---------------CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT---------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC---------------ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence 3566788999999999999999888754321 3455777889999999999999999999888887
Q ss_pred CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977 158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP 237 (547)
Q Consensus 158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp 237 (547)
+ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++ +..++.+|..|.||
T Consensus 69 ~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~ 144 (165)
T 3twr_A 69 H-AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH---GADPTKKNRDGNTP 144 (165)
T ss_dssp T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCT
T ss_pred C-ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCh
Confidence 6 6788888999999998999999999988888888888888888888888888888888844 34456678888888
Q ss_pred HhHHHhcCChHHHHHHhccCC
Q 008977 238 LHHAAYSGRELTSKLLLDHDK 258 (547)
Q Consensus 238 Lh~A~~~g~~~~v~~Ll~~~~ 258 (547)
||+|+. ++.+++++|+++|+
T Consensus 145 l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 145 LDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp GGGSCT-TCHHHHHHHHTC--
T ss_pred hHhHhc-CChHHHHHHhhccc
Confidence 888666 77888888887764
No 71
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.3e-29 Score=232.43 Aligned_cols=129 Identities=18% Similarity=0.130 Sum_probs=66.8
Q ss_pred ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY 207 (547)
Q Consensus 128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~ 207 (547)
+..|.||||.|+..|+.+++++|++.|++++ ..|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~ 96 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS 96 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 3444555666666666666666666555554 455555666666666666666666666555555555555555555555
Q ss_pred cCCHHHHHHHHcccccchhhhhhc-cCCCcHHhHH--HhcCChHHHHHHhccCCCc
Q 008977 208 TYPTEVIKQLFLHEEKRSLTAVRD-KYGWTPLHHA--AYSGRELTSKLLLDHDKSA 260 (547)
Q Consensus 208 ~~~~~~v~~Ll~~~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~~v~~Ll~~~~~~ 260 (547)
.|+.+++++|++.+ ..++.++ .+|+||||+| +..|+.+++++|+++|+++
T Consensus 97 ~g~~~~v~~Ll~~g---a~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~ 149 (229)
T 2vge_A 97 CNDTVICMALVQHG---AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149 (229)
T ss_dssp TTCHHHHHHHHTTT---CCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHcC---CCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc
Confidence 55555555555222 1122222 3444444444 4444444444444444433
No 72
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=2.4e-26 Score=201.07 Aligned_cols=154 Identities=23% Similarity=0.215 Sum_probs=131.0
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCC
Q 008977 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSA 161 (547)
Q Consensus 82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~ 161 (547)
+.||||.|+..|+.+++++|++..... ++..+..|.||||+ +..|+.+++++|+++|++++ ..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~ 64 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVH---------------PDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQ 64 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCC---------------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcC---------------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-Cc
Confidence 468999999999999999999872111 55678889999999 88999999999999998876 77
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHH
Q 008977 162 NRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA 241 (547)
Q Consensus 162 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A 241 (547)
|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++. ...+.+|..|.||||+|
T Consensus 65 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~g~t~l~~A 140 (156)
T 1bd8_A 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELA 140 (156)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT----SCTTCCCTTSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc----cCCCCcCCCCCCHHHHH
Confidence 88899999999999999999999999999988888899999999999999999988843 44666788888888888
Q ss_pred HhcCChHHHHHHhcc
Q 008977 242 AYSGRELTSKLLLDH 256 (547)
Q Consensus 242 ~~~g~~~~v~~Ll~~ 256 (547)
+..|+.+++++|+++
T Consensus 141 ~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 141 LQRGAQDLVDILQGH 155 (156)
T ss_dssp HHSCCHHHHHHHHTT
T ss_pred HHcCcHHHHHHHHhh
Confidence 888888888888764
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=2.5e-26 Score=205.98 Aligned_cols=166 Identities=25% Similarity=0.342 Sum_probs=130.2
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC
Q 008977 80 AKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY 159 (547)
Q Consensus 80 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~ 159 (547)
..+.+|||.|+..|+.++|++|++.+... ++.++..|.||||+|+..|+.+++++|++.|++++
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~- 66 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTEND---------------LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN- 66 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSC---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccc---------------ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-
Confidence 34678888888888888888888874432 45667888888888888888888888888888876
Q ss_pred CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHh
Q 008977 160 SANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH 239 (547)
Q Consensus 160 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh 239 (547)
..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++++ ..++.+|..|.||||
T Consensus 67 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~ 143 (179)
T 3f6q_A 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG---ALVSICNKYGEMPVD 143 (179)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCSSBCCTTSCCGGG
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCcchhccCCCCcHH
Confidence 67788888888888888888888888888888888888888888888888888888888443 345667788888888
Q ss_pred HHHhcCChHHHHHHhccCCCcceec
Q 008977 240 HAAYSGRELTSKLLLDHDKSAAFIG 264 (547)
Q Consensus 240 ~A~~~g~~~~v~~Ll~~~~~~~~~~ 264 (547)
+|+..++.+++++|++.|++.+...
T Consensus 144 ~A~~~~~~~~~~~L~~~g~~~~~~~ 168 (179)
T 3f6q_A 144 KAKAPLRELLRERAEKMGQNLNRIP 168 (179)
T ss_dssp GSCHHHHHHHHHHHHHTTCCCSCBC
T ss_pred HHHHHHHHHHHHHHHHhhcCcccCC
Confidence 8888888888888888887765543
No 74
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=8.9e-29 Score=246.70 Aligned_cols=260 Identities=14% Similarity=0.029 Sum_probs=178.3
Q ss_pred HHHHHH-cCCchHHHHHhhhhhhhhhcccCCCceeccCCccceeEeeecCCceecchhhHHHHHhhcCC--ccccccccC
Q 008977 5 LFEAAA-KGDIEPFREIARDELESIVTDLMNNTVLYGNITASHLTLQTEEGEIVSVSTKFVEHILDLSP--SVLFQADAK 81 (547)
Q Consensus 5 L~~A~~-~g~~~~l~~ll~~~~~~~~~~~~g~t~L~~~~~~lh~A~~~~~g~~~~~~~~~L~~~~~~~~--~~~~~~~~~ 81 (547)
++.|.. .++.+.+++++++|.+ ++|+| |+|+.. |+.++ +++|++ .+. ......|..
T Consensus 69 ~~~a~~~~~~~~~~~~l~~~g~~-------~~T~L-------h~Aa~~--G~~e~--v~~Ll~---~ga~~~~~~~~~~~ 127 (376)
T 2aja_A 69 LYYAHYNRNAKQLWSDAHKKGIK-------SEVIC-------FVAAIT--GCSSA--LDTLCL---LLTSDEIVKVIQAE 127 (376)
T ss_dssp HHHHHTTTTCTTHHHHHHHHTCC-------HHHHH-------HHHHHH--CCHHH--HHHHTT---C--CCSSCC--CHH
T ss_pred HHHHHhcCCCHHHHHHHHHcCCC-------cCCHH-------HHHHHc--CCHHH--HHHHHH---cCCcHHHHHHhccC
Confidence 445555 5778888888877643 34777 999999 99999 999965 222 122245667
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCC-C
Q 008977 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPY-S 160 (547)
Q Consensus 82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~-~ 160 (547)
|.||||+||..|+.++|++|++++++... .+..+.+ .||||+|+..|+.+++++|+++|++++. .
T Consensus 128 ~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~-------------~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~ 193 (376)
T 2aja_A 128 NYQAFRLAAENGHLHVLNRLCELAPTEIM-------------AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAM 193 (376)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHSCTTTHH-------------HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCccc-------------cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhc
Confidence 88999999999999999999999853110 1111222 8999999999999999999999998652 2
Q ss_pred CCCCCCcHHHHHH-HCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHh
Q 008977 161 ANRNNETPLYMAA-ANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLH 239 (547)
Q Consensus 161 ~~~~g~tpL~~A~-~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh 239 (547)
.|..|.||||+|+ ..|+.+++++|++.|+ .|.||||.|+.+|+.+++++|++++. ..+..+ ++++
T Consensus 194 ~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga---~~~~~~----~~l~ 259 (376)
T 2aja_A 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVN---RLKEMH----DAFK 259 (376)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHH---HHHHHH----TTTT
T ss_pred cCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCc---cccccc----HHHH
Confidence 6778999999999 9999999999999764 38999999999999999999994433 233332 2455
Q ss_pred HHHhcCChH---------------------------HHHHHhccCCCcc---eecCCCCCchHHHHHHHcCCHHHHHHHh
Q 008977 240 HAAYSGREL---------------------------TSKLLLDHDKSAA---FIGGKDRNMTALHLAAASGHIMVVDRIL 289 (547)
Q Consensus 240 ~A~~~g~~~---------------------------~v~~Ll~~~~~~~---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 289 (547)
.|+..|+.+ .+++|++.+.-.. .......+.||||+|++.|+.+++++|+
T Consensus 260 ~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl 339 (376)
T 2aja_A 260 LSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339 (376)
T ss_dssp TTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHT
T ss_pred HHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHH
Confidence 555555443 3444443221000 0011224679999999999999999999
Q ss_pred hcCCCccccccCCCCcHHHHHHHhcCcc
Q 008977 290 SSCDGCCAKVDERGWNFLHFAMVSLDLL 317 (547)
Q Consensus 290 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~ 317 (547)
+.+ ...|..|+|++.+|-..|+..
T Consensus 340 ~~~----~v~~~~~~~~~~~~~~~~~~~ 363 (376)
T 2aja_A 340 SIP----SVLALTKANNYYINETGGRLD 363 (376)
T ss_dssp TSH----HHHHSCC--------------
T ss_pred cCh----HHHHHHHHhcccccccccccc
Confidence 864 456888999999998888753
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=5.6e-26 Score=198.08 Aligned_cols=151 Identities=20% Similarity=0.219 Sum_probs=136.1
Q ss_pred CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC
Q 008977 131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP 210 (547)
Q Consensus 131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~ 210 (547)
+.||||.|++.|+.+++++|++.|++.. .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 3579999999999999999999998765 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHH
Q 008977 211 TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRI 288 (547)
Q Consensus 211 ~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 288 (547)
.+++++|+++ +..++.+|..|+||||+|+..|+.+++++|+++|++.+..+ ..|.||||+|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKH---GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS--KFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC--CCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999944 44467788999999999999999999999999998876553 4599999999999999999886
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=2e-26 Score=203.61 Aligned_cols=161 Identities=27% Similarity=0.308 Sum_probs=142.7
Q ss_pred cccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHH
Q 008977 127 TNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAV 206 (547)
Q Consensus 127 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~ 206 (547)
.|.+|.||||.|++.|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 47788999999999999999999999766555577888999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHH
Q 008977 207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD 286 (547)
Q Consensus 207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 286 (547)
..++.+++++|+++ +..++.+|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+. |+.++++
T Consensus 84 ~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~t~l~~a~~-~~~~i~~ 157 (165)
T 3twr_A 84 SYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN--RDGNTPLDLVKD-GDTDIQD 157 (165)
T ss_dssp HTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCTGGGSCT-TCHHHHH
T ss_pred HcCcHHHHHHHHhC---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC--CCCCChhHhHhc-CChHHHH
Confidence 99999999999944 44567789999999999999999999999999998876654 469999999776 9999999
Q ss_pred HHhhcCC
Q 008977 287 RILSSCD 293 (547)
Q Consensus 287 ~Ll~~~~ 293 (547)
+|++.++
T Consensus 158 ~L~~~gA 164 (165)
T 3twr_A 158 LLRGDAA 164 (165)
T ss_dssp HHHTC--
T ss_pred HHhhccc
Confidence 9998764
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=3.2e-27 Score=222.24 Aligned_cols=209 Identities=21% Similarity=0.196 Sum_probs=142.1
Q ss_pred ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY 207 (547)
Q Consensus 128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~ 207 (547)
+..|.||||.|++.|+.++++.|+++|.+++. +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+.
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 34699999999999999999999999999873 4778999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHH--HHcCCHHHH
Q 008977 208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLA--AASGHIMVV 285 (547)
Q Consensus 208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v 285 (547)
.|+.+++++|+.+ +..++.+|..|+||||+|+..|+.+++++|+++|++.+....+ .+.||||+| +..|+.+++
T Consensus 80 ~g~~~~v~~Ll~~---ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~-~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 80 AGHTEIVKFLVQF---GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS-DMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HTCHHHHHHHHHH---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS-SCCCHHHHCCSSSTTCCCHH
T ss_pred cCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCC-CCcchHHHHHHhhhccHHHH
Confidence 9999999999943 4557788999999999999999999999999999988766544 345999999 788999999
Q ss_pred HHHhhcCCCccc--------cccCCCCcHHHHHHHhcCcccccceeeecccccccc------cccccccCCCchhHHHH
Q 008977 286 DRILSSCDGCCA--------KVDERGWNFLHFAMVSLDLLQSSGLVIKHPTVRNSR------LLIAEDVNGNTPLHVVA 350 (547)
Q Consensus 286 ~~Ll~~~~~~~~--------~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~l~~~~~------~~~~~d~~G~T~Lh~A~ 350 (547)
++|++.+++... ..|..++++++++...|+.. . .+.+.+. .....+..|.+|.++..
T Consensus 156 ~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i-------~-vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~ 226 (239)
T 1ycs_B 156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCM-------T-IIHREDEDEIEWWWARLNDKEGYVPRNLLG 226 (239)
T ss_dssp HHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEE-------E-ECCCCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred HHHHHhhhcccccccceEEEEeccCCCCCCcccccCCCEE-------E-EEEecCCCCCCEEEEEECCcEEEeehHHee
Confidence 999998766422 12667889999888877621 1 1111111 12345677888877643
No 78
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=1.2e-25 Score=201.62 Aligned_cols=164 Identities=13% Similarity=0.147 Sum_probs=146.8
Q ss_pred cCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhc
Q 008977 129 EEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYT 208 (547)
Q Consensus 129 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~ 208 (547)
.++.++||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 46789999999999999999999986665558899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHH
Q 008977 209 YPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRI 288 (547)
Q Consensus 209 ~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 288 (547)
++.+++++|+++ +..++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..++.+++++|
T Consensus 83 ~~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--~~g~tpl~~A~~~~~~~~~~~L 157 (179)
T 3f6q_A 83 GHRDIVQKLLQY---KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN--KYGEMPVDKAKAPLRELLRERA 157 (179)
T ss_dssp TCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCC--TTSCCGGGGSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhc--cCCCCcHHHHHHHHHHHHHHHH
Confidence 999999999954 44567789999999999999999999999999998876654 4699999999999999999999
Q ss_pred hhcCCCccc
Q 008977 289 LSSCDGCCA 297 (547)
Q Consensus 289 l~~~~~~~~ 297 (547)
++.+++...
T Consensus 158 ~~~g~~~~~ 166 (179)
T 3f6q_A 158 EKMGQNLNR 166 (179)
T ss_dssp HHTTCCCSC
T ss_pred HHhhcCccc
Confidence 999988744
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.4e-25 Score=194.69 Aligned_cols=154 Identities=25% Similarity=0.271 Sum_probs=136.8
Q ss_pred CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCC
Q 008977 131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYP 210 (547)
Q Consensus 131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~ 210 (547)
|.||||.|+..|+.+++++|++.........+..|.||||+ +..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 46899999999999999999998322334788999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhh
Q 008977 211 TEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILS 290 (547)
Q Consensus 211 ~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 290 (547)
.+++++|++++ ..++.+|..|+||||+|+..|+.+++++|+++ .+.+.. +..|.||||+|+..|+.+++++|++
T Consensus 81 ~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~--~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 81 LDTLKVLVEHG---ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR--DARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHHHHHTT---CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCC--CTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HHHHHHHHHcC---CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 99999999443 44667889999999999999999999999998 665544 4469999999999999999999987
Q ss_pred c
Q 008977 291 S 291 (547)
Q Consensus 291 ~ 291 (547)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 4
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=6.5e-26 Score=213.30 Aligned_cols=126 Identities=20% Similarity=0.117 Sum_probs=58.9
Q ss_pred CCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcC
Q 008977 130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTY 209 (547)
Q Consensus 130 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~ 209 (547)
.|.||||.|+..|+.+++++|++.|++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..+
T Consensus 36 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~ 114 (239)
T 1ycs_B 36 LPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114 (239)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred hhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 34445555555555555555554444433 34444555555555555555555555555554444445555555555555
Q ss_pred CHHHHHHHHcccccchhhhhhccCCC-cHHhHH--HhcCChHHHHHHhccCCC
Q 008977 210 PTEVIKQLFLHEEKRSLTAVRDKYGW-TPLHHA--AYSGRELTSKLLLDHDKS 259 (547)
Q Consensus 210 ~~~~v~~Ll~~~~~~~~~~~~d~~g~-tpLh~A--~~~g~~~~v~~Ll~~~~~ 259 (547)
+.+++++|++++ ..++.++..|. ||||+| +..|+.+++++|++++++
T Consensus 115 ~~~~v~~Ll~~g---a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~ 164 (239)
T 1ycs_B 115 NVQVCKFLVESG---AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164 (239)
T ss_dssp CHHHHHHHHHTT---CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhc
Confidence 555555554222 22233333333 555544 444445555555544443
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=2.4e-24 Score=183.73 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=110.8
Q ss_pred CccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHH
Q 008977 72 PSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILI 151 (547)
Q Consensus 72 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll 151 (547)
+..++..|..|.||||+|+..|+.+++++|++++.+ ++.++..|.||||+|+. |+.+++++|+
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll 64 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD----------------PNALNRFGRRPIQVMMM-GSAQVAELLL 64 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTCCTTTTTSTT-SCHHHHHHHH
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC----------------cCCcCCCCCCHHHHHHc-CCHHHHHHHH
Confidence 345677888889999999999999999999988765 56678888999999999 9999999999
Q ss_pred hhCCCCCCCCCCC-CCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcc
Q 008977 152 VADPHVPYSANRN-NETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH 220 (547)
Q Consensus 152 ~~~~~~~~~~~~~-g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~ 220 (547)
++|++++ ..+.. |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++
T Consensus 65 ~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 65 LHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp HHTCCSS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred HCCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9888876 66777 88999999999999999999999888888888888888888888888888888843
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=7.3e-24 Score=185.30 Aligned_cols=142 Identities=16% Similarity=0.127 Sum_probs=88.4
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCC
Q 008977 77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPH 156 (547)
Q Consensus 77 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~ 156 (547)
..+..|.||||+|+..|+.++|++|++++.+ ++.++..|.||||+|+ .|+.+++++|+++|++
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~ 69 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGAN----------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE 69 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC----------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCC----------------CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC
Confidence 3456677777777777777777777776654 4556677777777764 6777777777777776
Q ss_pred CCCCCCCCCCc-HHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCC
Q 008977 157 VPYSANRNNET-PLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGW 235 (547)
Q Consensus 157 ~~~~~~~~g~t-pL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~ 235 (547)
++ ..+..|.| |||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++ +...+.++..|.
T Consensus 70 ~~-~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~ 145 (156)
T 1bi7_B 70 PN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA---AGGTRGSNHARI 145 (156)
T ss_dssp CC-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC---C-----------
T ss_pred CC-CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc---CCCCCccCcCcC
Confidence 65 56666776 77777777777777777777777777777777777777777777777777633 333455566666
Q ss_pred cHHh
Q 008977 236 TPLH 239 (547)
Q Consensus 236 tpLh 239 (547)
||.+
T Consensus 146 t~~~ 149 (156)
T 1bi7_B 146 DAAE 149 (156)
T ss_dssp ----
T ss_pred cccc
Confidence 6655
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.89 E-value=1.4e-23 Score=178.82 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=96.3
Q ss_pred hcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCC-CchHH
Q 008977 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPD-GKTAL 202 (547)
Q Consensus 124 l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~-g~t~L 202 (547)
++.++..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+. |+.+++++|+++|++++..+.. |.|||
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV 82 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence 55677788888888888888888888888887766 667788888888888 8888888888888887777777 77777
Q ss_pred HHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCC
Q 008977 203 HAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDK 258 (547)
Q Consensus 203 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~ 258 (547)
|+|+..++.+++++|++++ ..++.+|..|+||||+|+..++.+++++|+++|+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAG---ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTC---CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 7777777777777777332 3345556667777777777777777777766654
No 84
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=1.2e-23 Score=189.08 Aligned_cols=142 Identities=22% Similarity=0.203 Sum_probs=125.9
Q ss_pred cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV 157 (547)
Q Consensus 78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~ 157 (547)
.+..|.||||+|+..|+.+++++|++ +.+ ++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~----------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 102 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRD----------------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 46789999999999999999999998 554 5678999999999999999999999999999998
Q ss_pred CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977 158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP 237 (547)
Q Consensus 158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp 237 (547)
+...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++ ...+.+|
T Consensus 103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~--------------------~~~~~~~ 162 (183)
T 3deo_A 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK--------------------TTPKGNP 162 (183)
T ss_dssp TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH--------------------TCCCCSH
T ss_pred CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc--------------------CcccccH
Confidence 85545899999999999999999999999999999999999999999986321 2456788
Q ss_pred HhHHHhcCChHHHHHHhcc
Q 008977 238 LHHAAYSGRELTSKLLLDH 256 (547)
Q Consensus 238 Lh~A~~~g~~~~v~~Ll~~ 256 (547)
|++|+..|..+++++|.++
T Consensus 163 l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 163 MQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCHHHHHHHHHHh
Confidence 9999999988888888765
No 85
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=2e-23 Score=196.77 Aligned_cols=163 Identities=20% Similarity=0.165 Sum_probs=129.6
Q ss_pred eeEeeecCCceecchhhHHHHHhhcCCccccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhc
Q 008977 46 HLTLQTEEGEIVSVSTKFVEHILDLSPSVLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLG 125 (547)
Q Consensus 46 h~A~~~~~g~~~~~~~~~L~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~ 125 (547)
.+++.. |+.+. +..+.. . ....+..|.||||+|++.|+.++|++|++ +.+ ++
T Consensus 20 l~~~~~--g~~~~--~~~~~~----~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~----------------~~ 71 (244)
T 3ui2_A 20 LIEWKD--GHSPS--WVPSSY----I---AADVVSEYETPWWTAARKADEQALSQLLE-DRD----------------VD 71 (244)
T ss_dssp EEEESS--CCCCE--EEEGGG----S---CHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC----------------TT
T ss_pred HHHHHc--CCCcc--cccccc----c---ccccccCCCCHHHHHHHcCCHHHHHHHHc-CCC----------------CC
Confidence 788777 88777 544422 1 12345689999999999999999999999 654 66
Q ss_pred ccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHH
Q 008977 126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA 205 (547)
Q Consensus 126 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A 205 (547)
.+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus 72 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A 151 (244)
T 3ui2_A 72 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151 (244)
T ss_dssp CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 78999999999999999999999999999999855558899999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhcc
Q 008977 206 VYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDH 256 (547)
Q Consensus 206 ~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 256 (547)
+..+ ....+.||||+|+..|+.+++++|+++
T Consensus 152 ~~~~--------------------~~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 152 REIL--------------------KTTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp HHHH--------------------TTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--------------------hccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 7411 123445555555555555555555544
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=8.6e-24 Score=189.99 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=99.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccc-cCCCCHhHHHHHcCCH----HHHHHHHhhCCC
Q 008977 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTN-EEQNTPLHEAVRLRSV----DVAKILIVADPH 156 (547)
Q Consensus 82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~----~iv~~Ll~~~~~ 156 (547)
+.++|+.|++.|+.+.++.+++.+.+ ..+ ..|.||||+|+..|+. +++++|+++|++
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~------------------~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE------------------DKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS------------------CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc------------------cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC
Confidence 45678888888888888777765422 223 5678888888887764 478888888887
Q ss_pred CCCCCCCCCCcHHHHHHHCCC------HHHHHHHHHhCCCCCCCCCCCc-hHHHHHHhcCC-----HHHHHHHHcccccc
Q 008977 157 VPYSANRNNETPLYMAAANGS------VEIVAKILQKCPSPAHEGPDGK-TALHAAVYTYP-----TEVIKQLFLHEEKR 224 (547)
Q Consensus 157 ~~~~~~~~g~tpL~~A~~~g~------~~iv~~Ll~~~~~~~~~~~~g~-t~Lh~A~~~~~-----~~~v~~Ll~~~~~~ 224 (547)
++ .+|..|+||||+|+..|+ .+++++|+++|++++.+|..|. ||||+|+..+. .+++++|+. ..+
T Consensus 68 vn-~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~--~~g 144 (186)
T 3t8k_A 68 IK-SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS--QSG 144 (186)
T ss_dssp SS-CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT--STT
T ss_pred CC-CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH--hcC
Confidence 76 667788888888887775 4677777777777777777777 77777776332 234555552 122
Q ss_pred hhhhhhccCCCcHHhHHHhcCChHHHHHHhc
Q 008977 225 SLTAVRDKYGWTPLHHAAYSGRELTSKLLLD 255 (547)
Q Consensus 225 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 255 (547)
..++.+|..|+||||+|++.|+.+++++|.+
T Consensus 145 ad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 145 LQLLIKDKWGLTALEFVKRCQKPIALKMMED 175 (186)
T ss_dssp CCTTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3344445555555555555555555555544
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=7.7e-23 Score=174.29 Aligned_cols=125 Identities=22% Similarity=0.234 Sum_probs=106.2
Q ss_pred cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV 157 (547)
Q Consensus 78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~ 157 (547)
....+.||||+|+..|+.+++++|++++.+ ++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 73 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGAD----------------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 345578899999999999999999988766 5667888899999999999999999999988887
Q ss_pred CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHc
Q 008977 158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFL 219 (547)
Q Consensus 158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~ 219 (547)
+ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++
T Consensus 74 ~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 134 (136)
T 2jab_A 74 N-AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134 (136)
T ss_dssp T-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred C-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 6 677888999999999999999999999998888888888888888888888888888873
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=2.2e-22 Score=168.70 Aligned_cols=123 Identities=34% Similarity=0.537 Sum_probs=102.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977 81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS 160 (547)
Q Consensus 81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~ 160 (547)
+|+||||+|++.|+.+++++|++++.+ ++.++..|.||||+|+..|+.+++++|++.+++++ .
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~ 63 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-A 63 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC----------------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-c
Confidence 478888888888888888888887765 45567888888888888888888888888888776 6
Q ss_pred CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcc
Q 008977 161 ANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLH 220 (547)
Q Consensus 161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~ 220 (547)
.+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++
T Consensus 64 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 123 (126)
T 1n0r_A 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123 (126)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 777888888888888888888888888888888888888888888888888888888743
No 89
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=3.6e-23 Score=180.84 Aligned_cols=143 Identities=19% Similarity=0.194 Sum_probs=99.9
Q ss_pred cccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCch-HHH
Q 008977 125 GMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKT-ALH 203 (547)
Q Consensus 125 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t-~Lh 203 (547)
+..++.|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+ .|+.+++++|+++|++++..+..|.| |||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH 83 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 3457788899999999999999999998888876 67888889999885 88899999999988888888888887 888
Q ss_pred HHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHH
Q 008977 204 AAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALH 274 (547)
Q Consensus 204 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~ 274 (547)
+|+..++.+++++|+++ +..++.+|..|+||||+|+..|+.+++++|+++|++.+.... .|.||.+
T Consensus 84 ~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~--~g~t~~~ 149 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH--ARIDAAE 149 (156)
T ss_dssp HHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCc--CcCcccc
Confidence 88888888888888733 334556677777777777777777777777777766654432 3555554
No 90
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=4.4e-23 Score=185.32 Aligned_cols=156 Identities=13% Similarity=0.003 Sum_probs=134.6
Q ss_pred CCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCH----HHHHHHHHhCCCCCCCCCCCchHHHHHH
Q 008977 131 QNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSV----EIVAKILQKCPSPAHEGPDGKTALHAAV 206 (547)
Q Consensus 131 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~----~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~ 206 (547)
+.++|+.|++.|+.+.++.+++.+.+. ..+..|.||||+|+..|+. +++++|+++|++++.++..|+||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 568999999999999999999988653 2236799999999999975 5999999999999999999999999999
Q ss_pred hcCC------HHHHHHHHcccccchhhhhhccCCC-cHHhHHHhcCC-----hHHHHHHhc-cCCCcceecCCCCCchHH
Q 008977 207 YTYP------TEVIKQLFLHEEKRSLTAVRDKYGW-TPLHHAAYSGR-----ELTSKLLLD-HDKSAAFIGGKDRNMTAL 273 (547)
Q Consensus 207 ~~~~------~~~v~~Ll~~~~~~~~~~~~d~~g~-tpLh~A~~~g~-----~~~v~~Ll~-~~~~~~~~~~~~~g~tpL 273 (547)
..++ .+++++|++ .+..++.+|..|+ ||||+|+..+. .+++++|++ +|++++..+. .|.|||
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~---~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~--~G~TpL 158 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLE---KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK--WGLTAL 158 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHH---TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT--TSCCHH
T ss_pred HcCCcchhhHHHHHHHHHH---CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC--CCCCHH
Confidence 9887 578999994 4456778899999 99999999543 569999999 9988876644 599999
Q ss_pred HHHHHcCCHHHHHHHhhcCC
Q 008977 274 HLAAASGHIMVVDRILSSCD 293 (547)
Q Consensus 274 ~~A~~~g~~~~v~~Ll~~~~ 293 (547)
|+|++.|+.+++++|.+...
T Consensus 159 ~~A~~~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 159 EFVKRCQKPIALKMMEDYIK 178 (186)
T ss_dssp HHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999987643
No 91
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=8.2e-22 Score=165.20 Aligned_cols=125 Identities=36% Similarity=0.481 Sum_probs=89.3
Q ss_pred CCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcC
Q 008977 130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTY 209 (547)
Q Consensus 130 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~ 209 (547)
+|.||||.|+..|+.+++++|++.+++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence 37778888888888888888888777765 56777778888888888888888888877777777777777777777777
Q ss_pred CHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCC
Q 008977 210 PTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDK 258 (547)
Q Consensus 210 ~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~ 258 (547)
+.+++++|+++ +...+.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 80 ~~~~~~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 80 HLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp CHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred hHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 77777777633 23344556666666666666666666666666654
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=1e-22 Score=173.79 Aligned_cols=125 Identities=25% Similarity=0.311 Sum_probs=102.8
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCC
Q 008977 77 QADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPH 156 (547)
Q Consensus 77 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~ 156 (547)
.+|.+|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++++++
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 68 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD----------------PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Confidence 4677888888888888888888888887765 556788888888888888888888888888887
Q ss_pred CCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHH
Q 008977 157 VPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLF 218 (547)
Q Consensus 157 ~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll 218 (547)
++ ..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|.
T Consensus 69 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~ 129 (137)
T 3c5r_A 69 VN-TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129 (137)
T ss_dssp TT-CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred cc-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence 76 67788888888888888888888888888888888888888888888777766666554
No 93
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.87 E-value=4.5e-22 Score=169.51 Aligned_cols=126 Identities=27% Similarity=0.359 Sum_probs=89.9
Q ss_pred ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY 207 (547)
Q Consensus 128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~ 207 (547)
...+.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 4456778888888888888888888777765 567777888888888888888888888877777777777777777777
Q ss_pred cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccC
Q 008977 208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257 (547)
Q Consensus 208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ 257 (547)
.++.+++++|+++ +...+.+|..|+||||+|+..|+.+++++|++.|
T Consensus 90 ~~~~~~v~~Ll~~---g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 90 IGHLEIAEVLLKH---GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHc---CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 7777777777733 2334555666667777777766666666666553
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=9e-22 Score=164.46 Aligned_cols=112 Identities=27% Similarity=0.365 Sum_probs=97.2
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCC
Q 008977 79 DAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVP 158 (547)
Q Consensus 79 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ 158 (547)
+..|+||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|++++
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 67 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED----------------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC----------------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC----------------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 45678999999999999999999998765 56678889999999999999999999999998876
Q ss_pred CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977 159 YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY 207 (547)
Q Consensus 159 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~ 207 (547)
..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|..
T Consensus 68 -~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 68 -APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred -cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 778889999999999999999999999999999999999999999843
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=1.2e-21 Score=175.95 Aligned_cols=140 Identities=24% Similarity=0.224 Sum_probs=126.0
Q ss_pred ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC-CCCchHHHHHH
Q 008977 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG-PDGKTALHAAV 206 (547)
Q Consensus 128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~-~~g~t~Lh~A~ 206 (547)
+..|.||||.|+..|+.++++.|++ +.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 5678999999999999999999999 88776 789999999999999999999999999999999888 88999999999
Q ss_pred hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHH
Q 008977 207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD 286 (547)
Q Consensus 207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 286 (547)
..++.+++++|+++ +..++.+|..|+||||+|++.++. ..+.+||++|+..|+.++++
T Consensus 119 ~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l~~a~~~~~~~i~~ 176 (183)
T 3deo_A 119 GYVRPEVVEALVEL---GADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVIN 176 (183)
T ss_dssp HTTCHHHHHHHHHH---TCCTTCCCTTSCCHHHHHHHHHHT-------------------CCCCSHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHc---CCCCcCCCCCCCCHHHHHHHhccC-------------------cccccHHHHHHHcCHHHHHH
Confidence 99999999999944 445677899999999999985432 24789999999999999999
Q ss_pred HHhhc
Q 008977 287 RILSS 291 (547)
Q Consensus 287 ~Ll~~ 291 (547)
.|.++
T Consensus 177 ~L~~~ 181 (183)
T 3deo_A 177 VLEGQ 181 (183)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 99765
No 96
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=187.24 Aligned_cols=148 Identities=18% Similarity=0.069 Sum_probs=120.3
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHc---CCHHHHHHHHhhCCC
Q 008977 80 AKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL---RSVDVAKILIVADPH 156 (547)
Q Consensus 80 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~ 156 (547)
..+.++||.|+..|+.+.|+.|++.+.+...... -...+..|.||||+|+.. |+.+++++|+++|++
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~----------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad 218 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP----------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH 218 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE----------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCcccccCC----------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC
Confidence 3456789999999999999999998876321000 001588999999999997 899999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCc
Q 008977 157 VPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWT 236 (547)
Q Consensus 157 ~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~t 236 (547)
++ ..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++++. ..|.|
T Consensus 219 vn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga---------~~g~t 288 (301)
T 2b0o_E 219 LD-AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA---------GTFAF 288 (301)
T ss_dssp TT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH---------HTTSS
T ss_pred CC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC---------CCCCC
Confidence 87 778999999999999999999999999999999999999999999999999999999994332 25889
Q ss_pred HHhHHHhcCCh
Q 008977 237 PLHHAAYSGRE 247 (547)
Q Consensus 237 pLh~A~~~g~~ 247 (547)
|||+|+..|+.
T Consensus 289 pLh~A~~~g~~ 299 (301)
T 2b0o_E 289 PLHVDYSWVIS 299 (301)
T ss_dssp CCC--------
T ss_pred hhHHHHhcCCc
Confidence 99999988763
No 97
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=8.3e-22 Score=182.98 Aligned_cols=132 Identities=21% Similarity=0.208 Sum_probs=105.5
Q ss_pred cccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh-C
Q 008977 76 FQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA-D 154 (547)
Q Consensus 76 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-~ 154 (547)
+..+.+|.||||+|+..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++. |
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g 130 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVG----------------VNGLDKAGSTALYWACHGGHKDIVEMLFTQPN 130 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTT
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCC----------------ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCC
Confidence 34567788999999999999999999987765 566788899999999999999999999988 7
Q ss_pred CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccc
Q 008977 155 PHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKR 224 (547)
Q Consensus 155 ~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~ 224 (547)
.+++ ..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.++++.|+..+...
T Consensus 131 ~~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 131 IELN-QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp CCCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred CCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 7766 77888899999999999999999999999988888888888888888888888888887544433
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=1.5e-21 Score=183.96 Aligned_cols=143 Identities=23% Similarity=0.207 Sum_probs=127.5
Q ss_pred ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCC-CCCchHHHHHH
Q 008977 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEG-PDGKTALHAAV 206 (547)
Q Consensus 128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~-~~g~t~Lh~A~ 206 (547)
+..|.||||+|+..|+.++++.|++ +.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 4678999999999999999999999 88776 788999999999999999999999999999999888 78999999999
Q ss_pred hcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHH
Q 008977 207 YTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVD 286 (547)
Q Consensus 207 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 286 (547)
..|+.+++++|+++ +..++.+|..|+||||+|+..++. ..+.||||+|+..|+.++++
T Consensus 120 ~~g~~~~v~~Ll~~---ga~~~~~d~~g~t~l~~A~~~~~~-------------------~~~~~~l~~a~~~g~~~iv~ 177 (244)
T 3ui2_A 120 GYVRPEVVEALVEL---GADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVIN 177 (244)
T ss_dssp HTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHHTT-------------------CCCSSHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHC---CCCCCCCCCCCCcHHHHHHHHHhc-------------------cCCCCHHHHHHHcChHHHHH
Confidence 99999999999954 445677899999999999864321 25889999999999999999
Q ss_pred HHhhcCCC
Q 008977 287 RILSSCDG 294 (547)
Q Consensus 287 ~Ll~~~~~ 294 (547)
+|++...+
T Consensus 178 ~L~~~~~~ 185 (244)
T 3ui2_A 178 VLEGQVFE 185 (244)
T ss_dssp HHHHHHEE
T ss_pred HHHHhccc
Confidence 99986443
No 99
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=1.6e-21 Score=166.27 Aligned_cols=128 Identities=19% Similarity=0.204 Sum_probs=107.6
Q ss_pred ccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHH
Q 008977 126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA 205 (547)
Q Consensus 126 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A 205 (547)
.+|..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDA 83 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHH
Confidence 458889999999999999999999999988876 7788899999999999999999999999999988888899999999
Q ss_pred HhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccC
Q 008977 206 VYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHD 257 (547)
Q Consensus 206 ~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ 257 (547)
+..++.+++++|+++ +...+.+|..|.||||+|+..+..+++++|.+.+
T Consensus 84 ~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSY---GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 999999999999843 3446677888999999998888888877776654
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=181.40 Aligned_cols=138 Identities=19% Similarity=0.120 Sum_probs=79.9
Q ss_pred CcHHHHHHHCCCHHHHHHHHHhCCCCCC------CCCCCchHHHHHHhc---CCHHHHHHHHcccccchhhhhhccCCCc
Q 008977 166 ETPLYMAAANGSVEIVAKILQKCPSPAH------EGPDGKTALHAAVYT---YPTEVIKQLFLHEEKRSLTAVRDKYGWT 236 (547)
Q Consensus 166 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~------~~~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~~~d~~g~t 236 (547)
.++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. ++.+++++|+++ +..++.+|.+|+|
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~---gadvn~~d~~G~T 228 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN---GGHLDAKAADGNT 228 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH---SSCTTCCCTTCCC
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc---CCCCCCCCCCCCC
Confidence 3556666666666666666666666555 455666666666664 566666666632 2334555666666
Q ss_pred HHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCcHHHHHHHhcC
Q 008977 237 PLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGCCAKVDERGWNFLHFAMVSLD 315 (547)
Q Consensus 237 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 315 (547)
|||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.+++ .|+||||+|+..|.
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~~~~d--~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALVGTVN--EAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCCSCCC--TTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence 6666666666666666666666554432 2466666666666666666666666554 35666666666554
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.82 E-value=1.8e-20 Score=156.45 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=83.6
Q ss_pred ccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHh
Q 008977 128 NEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVY 207 (547)
Q Consensus 128 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~ 207 (547)
+..|.||||+|+..|+.+++++|++.+++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 4567788888888888888888888887765 667778888888888888888888888888887777777888888887
Q ss_pred cCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHh
Q 008977 208 TYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAY 243 (547)
Q Consensus 208 ~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~ 243 (547)
.++.+++++|+++ +...+.+|..|.||||+|..
T Consensus 83 ~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 83 EGHVSCVKLLLSK---GADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHCCC
T ss_pred cCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHhCC
Confidence 7777777777743 33355667777777777743
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.82 E-value=1.7e-20 Score=174.18 Aligned_cols=134 Identities=20% Similarity=0.222 Sum_probs=110.2
Q ss_pred ccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHh-CCCCCCCCCCCchHHHH
Q 008977 126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQK-CPSPAHEGPDGKTALHA 204 (547)
Q Consensus 126 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~g~t~Lh~ 204 (547)
..+..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+..|+.+++++|++. |++++..|..|.||||+
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence 457889999999999999999999999999887 7789999999999999999999999998 99999999999999999
Q ss_pred HHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCccee
Q 008977 205 AVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFI 263 (547)
Q Consensus 205 A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~ 263 (547)
|+..|+.+++++|+++ +...+.+|..|.||||+|+..++.++++.|++.+......
T Consensus 147 A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~ 202 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS 202 (222)
T ss_dssp HHHHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC------------
T ss_pred HHHcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence 9999999999999943 4446677888999999999999999999998887765543
No 103
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=6.2e-20 Score=182.10 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=92.9
Q ss_pred CCChHHHHHHHc-CCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccc--cCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977 81 KGDSPLHLAAKK-GDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTN--EEQNTPLHEAVRLRSVDVAKILIVADPHV 157 (547)
Q Consensus 81 ~g~t~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~ 157 (547)
.+.|+||.|+.. |+.++++.|++++++ ++..+ ..|.||||+|+..|+.+++++|+++|+++
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad----------------vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv 261 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGAD----------------VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV 261 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCC----------------TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCC----------------CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence 455777777777 777777777777665 34444 67777777777777777777777777777
Q ss_pred CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977 158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP 237 (547)
Q Consensus 158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp 237 (547)
+ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+..+.........+..+.|+
T Consensus 262 n-~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~ 340 (368)
T 3jue_A 262 N-QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETY 340 (368)
T ss_dssp T-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------
T ss_pred C-CCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCH
Confidence 6 667777777777777777777777777777777777777777777777777777777775443333333344555555
Q ss_pred HhHHHh
Q 008977 238 LHHAAY 243 (547)
Q Consensus 238 Lh~A~~ 243 (547)
++.+..
T Consensus 341 l~i~~~ 346 (368)
T 3jue_A 341 LDIFRD 346 (368)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555443
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.6e-19 Score=142.52 Aligned_cols=93 Identities=35% Similarity=0.594 Sum_probs=74.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCC
Q 008977 81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYS 160 (547)
Q Consensus 81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~ 160 (547)
+|+||||+|+..|+.+++++|++++.+ ++.+|..|.||||+|+..|+.+++++|+++|++++ .
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~ 63 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-A 63 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC----------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-c
Confidence 477888888888888888888887765 56677888888888888888888888888888776 6
Q ss_pred CCCCCCcHHHHHHHCCCHHHHHHHHHhCCC
Q 008977 161 ANRNNETPLYMAAANGSVEIVAKILQKCPS 190 (547)
Q Consensus 161 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 190 (547)
+|..|.||||+|+..|+.+++++|+++|++
T Consensus 64 ~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 777888888888888888888888887764
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=1.6e-18 Score=166.07 Aligned_cols=123 Identities=19% Similarity=0.154 Sum_probs=69.9
Q ss_pred cHHHHHHHCCCHHHHHHHHHhCCCCC------CCCCCCchHHHHHHhc---CCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977 167 TPLYMAAANGSVEIVAKILQKCPSPA------HEGPDGKTALHAAVYT---YPTEVIKQLFLHEEKRSLTAVRDKYGWTP 237 (547)
Q Consensus 167 tpL~~A~~~g~~~iv~~Ll~~~~~~~------~~~~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp 237 (547)
++|+.|+..|+.+.++.+++.|++++ ..+..|.||||+|+.. ++.+++++|+++ +..++.+|..|+||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~---ga~in~~d~~g~Tp 208 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN---SGNLDKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH---CSCTTCCCTTCCCH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC---CCCccccCCCCCCH
Confidence 45555555555555555555555532 2245555666666655 555566655522 23344555566666
Q ss_pred HhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCC
Q 008977 238 LHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDG 294 (547)
Q Consensus 238 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 294 (547)
||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++++++
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d--~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKASIEIAN--ESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcc--CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 666666666666666666665554433 2466666666666666666666665543
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.78 E-value=1.1e-18 Score=181.75 Aligned_cols=143 Identities=19% Similarity=0.092 Sum_probs=114.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHH---cCCHHHHHHHHhhCCCC
Q 008977 81 KGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVR---LRSVDVAKILIVADPHV 157 (547)
Q Consensus 81 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~---~g~~~iv~~Ll~~~~~~ 157 (547)
...+.||.|+..|+.+.|+.|++.|++...... ....+..|.||||+|+. .|+.+++++|+++|+++
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~----------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v 200 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP----------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL 200 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBC----------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcccccCCCC----------CcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC
Confidence 344789999999999999999999877321100 01227889999999977 89999999999999998
Q ss_pred CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977 158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP 237 (547)
Q Consensus 158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp 237 (547)
+ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++.... .+|
T Consensus 201 n-~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~---------~~~ 270 (497)
T 3lvq_E 201 D-AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF---------AFP 270 (497)
T ss_dssp T-CCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---------------
T ss_pred C-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC---------CCc
Confidence 7 789999999999999999999999999999999999999999999999999999999996554322 267
Q ss_pred HhHHHh
Q 008977 238 LHHAAY 243 (547)
Q Consensus 238 Lh~A~~ 243 (547)
+|.+..
T Consensus 271 ~h~~~~ 276 (497)
T 3lvq_E 271 LHVDYS 276 (497)
T ss_dssp ------
T ss_pred ceeecc
Confidence 777654
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=2.3e-19 Score=147.73 Aligned_cols=107 Identities=28% Similarity=0.390 Sum_probs=68.8
Q ss_pred cccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCC
Q 008977 78 ADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHV 157 (547)
Q Consensus 78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~ 157 (547)
+|.+|.||||+|+..|+.+++++|++++.+ ++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 68 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD----------------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC----------------SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 456666666666666666666666666544 4455666666666666666666666666666665
Q ss_pred CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchH
Q 008977 158 PYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTA 201 (547)
Q Consensus 158 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~ 201 (547)
+ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.+|
T Consensus 69 ~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 69 N-ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp T-CCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred c-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 5 556666666666666666666666666666666665555554
No 108
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.77 E-value=1.8e-18 Score=165.86 Aligned_cols=129 Identities=19% Similarity=0.095 Sum_probs=115.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHc---CCHHHHHHHHhhCCCCC
Q 008977 82 GDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRL---RSVDVAKILIVADPHVP 158 (547)
Q Consensus 82 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~ 158 (547)
..++|+.|+..|+.+.++.+++.+.+.... ..++..+..|.||||+|+.. |+.+++++|+++|++++
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~----------~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in 199 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEK----------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD 199 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSB----------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhh----------ccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc
Confidence 357999999999999999999988763211 11445588899999999999 89999999999999987
Q ss_pred CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcCCHHHHHHHHccc
Q 008977 159 YSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTEVIKQLFLHE 221 (547)
Q Consensus 159 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 221 (547)
..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus 200 -~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 200 -KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp -CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999999999999999544
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.77 E-value=3e-18 Score=135.20 Aligned_cols=90 Identities=34% Similarity=0.484 Sum_probs=75.8
Q ss_pred CCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHHHhcC
Q 008977 130 EQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAAVYTY 209 (547)
Q Consensus 130 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A~~~~ 209 (547)
+|.||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 37888999998888999999888888876 67888888999998888888888888888888888888888888888888
Q ss_pred CHHHHHHHHcc
Q 008977 210 PTEVIKQLFLH 220 (547)
Q Consensus 210 ~~~~v~~Ll~~ 220 (547)
+.+++++|+++
T Consensus 80 ~~~~~~~Ll~~ 90 (93)
T 1n0q_A 80 HLEVVKLLLEA 90 (93)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 88888888743
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.76 E-value=2.2e-18 Score=179.55 Aligned_cols=136 Identities=22% Similarity=0.194 Sum_probs=111.4
Q ss_pred CCHhHHHHHcCCHHHHHHHHhhCCCCCCC-----CCCCCCcHHHHHHH---CCCHHHHHHHHHhCCCCCCCCCCCchHHH
Q 008977 132 NTPLHEAVRLRSVDVAKILIVADPHVPYS-----ANRNNETPLYMAAA---NGSVEIVAKILQKCPSPAHEGPDGKTALH 203 (547)
Q Consensus 132 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~---~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh 203 (547)
.+.||.|+..|+.+.++.|++.|++++.. .+..|.||||+|+. .|+.+++++|+++|++++..|..|.||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 36799999999999999999999988733 27789999999966 89999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHHHhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHH
Q 008977 204 AAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHAAYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAA 278 (547)
Q Consensus 204 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~ 278 (547)
+|+..|+.+++++|+++ +..++.+|..|+||||+|+..|+.+++++|+++|++. +.+|+|.+..
T Consensus 213 ~A~~~g~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~--------~~~~~h~~~~ 276 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT--------FAFPLHVDYS 276 (497)
T ss_dssp HHTTTTCHHHHHHHHHT---CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------------------
T ss_pred HHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC--------CCCcceeecc
Confidence 99999999999999954 4456778999999999999999999999999999865 3367777654
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.76 E-value=1.7e-18 Score=171.79 Aligned_cols=143 Identities=17% Similarity=0.128 Sum_probs=60.4
Q ss_pred CCcHHHHHHHC-CCHHHHHHHHHhCCCCCCCC--CCCchHHHHHHhcCCHHHHHHHHcccccchhhhhhccCCCcHHhHH
Q 008977 165 NETPLYMAAAN-GSVEIVAKILQKCPSPAHEG--PDGKTALHAAVYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTPLHHA 241 (547)
Q Consensus 165 g~tpL~~A~~~-g~~~iv~~Ll~~~~~~~~~~--~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tpLh~A 241 (547)
+.||||.|+.. |+.++++.|+++|++++..+ ..|.||||+|+..++.+++++|+++ +..++.+|..|+||||+|
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~---Gadvn~~d~~G~TpLh~A 275 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN---GANVNQADSAGRGPLHHA 275 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHH
Confidence 34455555554 55555555555555554444 4455555555555555555555522 222334445555555555
Q ss_pred HhcCChHHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcCCCc--cccccCCCCcHHHHHHH
Q 008977 242 AYSGRELTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSCDGC--CAKVDERGWNFLHFAMV 312 (547)
Q Consensus 242 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~ 312 (547)
+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.+... ....+..+.|+++++..
T Consensus 276 ~~~g~~~~v~~LL~~Gad~~~~d--~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 276 TILGHTGLACLFLKRGADLGARD--SEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HHcCcHHHHHHHHHCcCCCCCcC--CCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 55555555555555554443332 23555555555555555555555443221 11223444555555443
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.73 E-value=8e-18 Score=138.45 Aligned_cols=108 Identities=28% Similarity=0.310 Sum_probs=90.5
Q ss_pred ccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHHHH
Q 008977 126 MTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALHAA 205 (547)
Q Consensus 126 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh~A 205 (547)
.+|..|.||||+|+..|+.+++++|++++++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 468889999999999999999999999988876 6788899999999999999999999999999888888888899988
Q ss_pred HhcCCHHHHHHHHcccccchhhhhhccCCCcH
Q 008977 206 VYTYPTEVIKQLFLHEEKRSLTAVRDKYGWTP 237 (547)
Q Consensus 206 ~~~~~~~~v~~Ll~~~~~~~~~~~~d~~g~tp 237 (547)
+..++.+++++|+++ +..++.++..|.+|
T Consensus 83 ~~~~~~~~~~~Ll~~---ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAK---GADVNARSWGSSHH 111 (115)
T ss_dssp HTTTCHHHHHHHHTT---SSSHHHHSCCCC--
T ss_pred HHCCCHHHHHHHHHc---CCCCCcCCcccccc
Confidence 888888888888843 34466677777776
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.67 E-value=1.3e-16 Score=130.08 Aligned_cols=94 Identities=21% Similarity=0.309 Sum_probs=62.6
Q ss_pred cccccccCCChHHHHHHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccccCCCCHhHHHHHcCCHHHHHHHHhh
Q 008977 74 VLFQADAKGDSPLHLAAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTNEEQNTPLHEAVRLRSVDVAKILIVA 153 (547)
Q Consensus 74 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~ 153 (547)
.....|.+|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ 79 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD----------------VAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHHcCCC----------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3445666777777777777777777777776654 455667777777777777777777777777
Q ss_pred CCCCCCCCCCCCCcHHHHHHHCCCHHHHHHH
Q 008977 154 DPHVPYSANRNNETPLYMAAANGSVEIVAKI 184 (547)
Q Consensus 154 ~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L 184 (547)
|++++ ..|..|.||||+|+..|+.+++++|
T Consensus 80 ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 80 GADVX-AQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TCCTT-CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCcc-ccccCCCcHHHHHHHcCCHHHHHHh
Confidence 76665 5666777777777777777777665
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.65 E-value=4.8e-16 Score=126.59 Aligned_cols=93 Identities=26% Similarity=0.335 Sum_probs=82.5
Q ss_pred hcccccCCCCHhHHHHHcCCHHHHHHHHhhCCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCCCCCCCCCchHHH
Q 008977 124 LGMTNEEQNTPLHEAVRLRSVDVAKILIVADPHVPYSANRNNETPLYMAAANGSVEIVAKILQKCPSPAHEGPDGKTALH 203 (547)
Q Consensus 124 l~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~g~t~Lh 203 (547)
....+.+|.||||+|+..|+.+++++|++.+++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence 45568889999999999999999999999999887 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHH
Q 008977 204 AAVYTYPTEVIKQL 217 (547)
Q Consensus 204 ~A~~~~~~~~v~~L 217 (547)
+|+..++.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999998876
No 115
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=64.37 E-value=7.3 Score=37.24 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhchhh----ccCCch
Q 008977 485 HYLILVSLLAMVVAFTTGTYAV----LAPSVG 512 (547)
Q Consensus 485 ~~~~~~s~~~m~~af~~~~~~v----~~~~~~ 512 (547)
..+..+|++.+..+|++|+|-+ +|...|
T Consensus 280 k~LTiit~IflP~T~IaGiyGMNf~~mPel~~ 311 (339)
T 4ev6_A 280 KILTMVTTIFAVPMWITGIYGMNFSYLPLANN 311 (339)
T ss_dssp HHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhhccCcCCCCCCccC
Confidence 3566788888999999999954 555443
No 116
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=61.14 E-value=15 Score=24.12 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=18.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008977 510 SVGLSVATCVLGSSFSLFAFVTMFMLVHGHYQRI 543 (547)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (547)
.++|.|++.+++..+++. ++++.+|-++..+|-
T Consensus 7 vp~WiIi~svl~GLLLL~-Lii~~LwK~GFFKR~ 39 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLM-LLILALWKIGFFKRP 39 (54)
T ss_dssp CCTHHHHHHHHHHHHHHH-HHHHHHHHHHHTTSC
T ss_pred CchHHHHHHHHHHHHHHH-HHHHHHHHcCcccCC
Confidence 457777777766444433 333445555655543
No 117
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=57.34 E-value=19 Score=23.66 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=17.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008977 510 SVGLSVATCVLGSSFSLFAFVTMFMLVHGHYQRI 543 (547)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (547)
.++|.|++.+++..+++.. +++.+|-++..+|-
T Consensus 10 vp~wiIi~svl~GLllL~l-i~~~LwK~GFFkR~ 42 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTI-LVLAMWKVGFFKRN 42 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTTT
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHcCcccCC
Confidence 4577777766664444333 33444455555543
No 118
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=57.11 E-value=5.4 Score=38.41 Aligned_cols=17 Identities=6% Similarity=-0.052 Sum_probs=9.0
Q ss_pred ccCCCCcHHHHHHHhcC
Q 008977 299 VDERGWNFLHFAMVSLD 315 (547)
Q Consensus 299 ~d~~g~t~Lh~A~~~~~ 315 (547)
.|..|+-.+..+....+
T Consensus 292 ~d~ygnyViq~~L~~~~ 308 (351)
T 3gvo_A 292 KDQYANYVVQKMIDMAE 308 (351)
T ss_dssp HSTTHHHHHHHHHHHCC
T ss_pred CCcchHHHHHHHHHhCC
Confidence 35556555555554443
No 119
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=55.53 E-value=26 Score=21.89 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008977 512 GLSVATCVLGSSFSLFAFVTMFMLVHGHYQRIM 544 (547)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (547)
..+++..++|. +++..+.+...++-++++++
T Consensus 11 ~~~Ia~~vVGv--ll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 11 LTSIISAVVGI--LLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHCSC
T ss_pred ccchHHHHHHH--HHHHHHHHHHHhheehhhhh
Confidence 34566666662 23333334455555555543
No 120
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=42.24 E-value=13 Score=35.96 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhchhh----ccCCch
Q 008977 485 HYLILVSLLAMVVAFTTGTYAV----LAPSVG 512 (547)
Q Consensus 485 ~~~~~~s~~~m~~af~~~~~~v----~~~~~~ 512 (547)
..|..+|.+.|..+|++|+|-+ +|...|
T Consensus 304 k~LTiit~IflP~T~IaGiyGMNf~~mPel~~ 335 (363)
T 2iub_A 304 KVLTIIATIFMPLTFIAGIYGMNFEYMPELRW 335 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCcccC
Confidence 4566788999999999999953 565444
No 121
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=42.21 E-value=25 Score=21.99 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008977 513 LSVATCVLGSSFSLFAFVTMFMLVHGHYQRI 543 (547)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (547)
.+|+..+++..+.+.++. ..++++-++++.
T Consensus 11 ~~IA~gVVgGv~~~~ii~-~~~~~~~RRr~~ 40 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVA-LGIGLFMRRRHI 40 (44)
T ss_dssp SSSTHHHHHHHHHHHHHH-HHHHHHHHTTTC
T ss_pred ceEEeehhHHHHHHHHHH-HHHHHHhhhhHh
Confidence 456666776555544444 444444444444
No 122
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=40.79 E-value=40 Score=21.04 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008977 513 LSVATCVLGSSFSLFAFVTMFMLVHGHYQRI 543 (547)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (547)
.+|+..+++..+.+.+.. ...+++-+++++
T Consensus 10 ~aIA~gVVgGv~~v~ii~-~~~~~~~RRRr~ 39 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVG-LTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHTTCS
T ss_pred ceEEEeehHHHHHHHHHH-HHHHHHhhhhhh
Confidence 456667776555444443 444444444444
No 123
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=39.81 E-value=10 Score=22.63 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=17.4
Q ss_pred CHHHHHHHHcCCchHHHHHhh
Q 008977 2 DRKLFEAAAKGDIEPFREIAR 22 (547)
Q Consensus 2 ~~~L~~A~~~g~~~~l~~ll~ 22 (547)
...++.|+..||.+.++.|-.
T Consensus 14 EQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 14 RKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 356889999999999988754
No 124
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=39.60 E-value=48 Score=31.55 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=11.3
Q ss_pred ccccCCCchhHHHHHh
Q 008977 337 AEDVNGNTPLHVVAAV 352 (547)
Q Consensus 337 ~~d~~G~T~Lh~A~~~ 352 (547)
.+|..||-.+..+...
T Consensus 291 ~~d~ygnyViq~~L~~ 306 (351)
T 3gvo_A 291 MKDQYANYVVQKMIDM 306 (351)
T ss_dssp HHSTTHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHh
Confidence 4677888777776655
No 125
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=38.65 E-value=31 Score=33.21 Aligned_cols=14 Identities=7% Similarity=-0.076 Sum_probs=7.1
Q ss_pred cCCCCcHHHHHHHh
Q 008977 300 DERGWNFLHFAMVS 313 (547)
Q Consensus 300 d~~g~t~Lh~A~~~ 313 (547)
|..|+-.+..+...
T Consensus 310 D~~gNyViq~~l~~ 323 (369)
T 3k49_A 310 DQFANYVIQKLVNV 323 (369)
T ss_dssp STTHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHh
Confidence 45555555555443
No 126
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=34.08 E-value=68 Score=18.73 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 008977 513 LSVATCVLGSSFSLFAFVTMFM 534 (547)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~ 534 (547)
....+.+++..+.++++..+.+
T Consensus 8 Tl~~V~ilg~~I~i~W~~vf~l 29 (34)
T 3s8f_C 8 ALAVILVLTLTILVFWLGVYAV 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHee
Confidence 3445566776666666665533
No 127
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=26.83 E-value=2.8e+02 Score=23.25 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=24.3
Q ss_pred cHHhHHHhcCCh-HHHHHHhccCCCcceecCCCCCchHHHHHHHcCCHHHHHHHhhcC
Q 008977 236 TPLHHAAYSGRE-LTSKLLLDHDKSAAFIGGKDRNMTALHLAAASGHIMVVDRILSSC 292 (547)
Q Consensus 236 tpLh~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 292 (547)
...+.+...|+. +.++.|.+.+ ...-+...|-.+|..++.+.+++.-
T Consensus 94 ~af~~~l~lGdv~~~i~lL~~~~----------r~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 94 SMLLNTFYNNSTKERSSIFAEGG----------SLPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTT----------CHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHCC----------ChHHHHHHHHHcCcHHHHHHHHHHh
Confidence 345555555553 3444454432 1122445555667777777776543
No 128
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=26.78 E-value=2.6e+02 Score=23.65 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=9.5
Q ss_pred hhhhhhHHHHHHHHHHH
Q 008977 447 AFVVSDVIAMVLSVSAI 463 (547)
Q Consensus 447 ~F~~~~~~a~~~S~~~~ 463 (547)
.|.++-.+++.+++.++
T Consensus 4 ~F~~~a~~~i~~al~vv 20 (184)
T 3rko_J 4 AFYICGLIAILATLRVI 20 (184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555556665555544
No 129
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=26.58 E-value=1e+02 Score=19.00 Aligned_cols=18 Identities=28% Similarity=0.041 Sum_probs=10.1
Q ss_pred CchhhHHHHHHHHHHHHH
Q 008977 510 SVGLSVATCVLGSSFSLF 527 (547)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~ 527 (547)
.++|.+.+.+++..+++.
T Consensus 8 vp~wiIi~s~l~GLllL~ 25 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLT 25 (42)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 456776666666444433
No 130
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=24.80 E-value=82 Score=21.45 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008977 518 CVLGSSFSLFAFVTMFML 535 (547)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~ 535 (547)
+++|+++.++.|..++.+
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 688888888888777555
No 131
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=21.97 E-value=1.7e+02 Score=28.24 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=44.7
Q ss_pred HHHcCCHHHHHHHHHHhhcCCchhhhhhhhHHHHHhcccc--cCCCCHhHHHHHcCCHHHHHHHHh
Q 008977 89 AAKKGDAAIVKFLIKFAKKQPRDLQRGVKSAERQMLGMTN--EEQNTPLHEAVRLRSVDVAKILIV 152 (547)
Q Consensus 89 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~t~Lh~A~~~g~~~iv~~Ll~ 152 (547)
.+..|+...|+..+..|.+....+ ...+-.++|..+ ..|.|.+|.|++..+.+++..|+.
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~l----t~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQL----TADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCC----CHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhccc----CHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 445799999999998887654332 233444555444 469999999999999999999986
No 132
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=21.19 E-value=1.4e+02 Score=28.49 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=15.7
Q ss_pred cccCCChHHHHHHHcCCHHHHHHHHHH
Q 008977 78 ADAKGDSPLHLAAKKGDAAIVKFLIKF 104 (547)
Q Consensus 78 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~ 104 (547)
.|..|...+.-....+..+..+.+++.
T Consensus 74 ~d~~gn~vvQkll~~~~~~~~~~i~~~ 100 (369)
T 3k49_A 74 NDVFGNYVIQKFFEFGSKIQKNTLVDQ 100 (369)
T ss_dssp HSTTTHHHHHHHHHHCCHHHHHHHHHH
T ss_pred hCcccccHHHHHHHhCCHHHHHHHHHH
Confidence 455666666666666665555555554
Done!