BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008979
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 275 LTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGF--VHGDPHAGNILVSS 332
+ M++C V D+ L+ ++A L + ++H +H D AGNIL+++
Sbjct: 101 IVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNT 160
Query: 333 EGRNGFSLVLLDHGICKTLDD 353
EG L D G+ L D
Sbjct: 161 EGHAK----LADFGVAGQLTD 177
>pdb|3CE2|A Chain A, Crystal Structure Of Putative Peptidase From Chlamydophila
Abortus
Length = 618
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 145 KEVLMSNLGQHLSEIFISLDEQPIAAASIAQVHHAILRGN--QEVAVKVQYPGLEHKMRL 202
KE ++ L + L IF +L Q + A+ +HHA G E + Y L+++
Sbjct: 451 KEEKITILTRCLDTIFSTLFRQVLFASFEYDIHHAAEHGVPLTEEYLSSTYKNLQNEFYG 510
Query: 203 DIAIMSFLSKTVTWI-FPEYRFGWLVSEFAGTISLELDFIQEAKNSEKTAEN 253
+I LS + W P + + + V ++A I L F+++ N+E A N
Sbjct: 511 EIITFDVLSN-IEWARIPHFYYNFYVYQYATGIIAALCFLEKILNNEDNALN 561
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 275 LTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILVSS 332
+ M+F +G + D+ + + N ++A + V + ++H G +H D + +IL++S
Sbjct: 119 VVMEFLEGGALTDI--VTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTS 176
Query: 333 EGRNGFSLVLLDHGIC 348
+GR + L D G C
Sbjct: 177 DGR----IKLSDFGFC 188
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 277 MQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILVSSEG 334
M+F +G + D+ S +++ N ++A V + ++H G +H D + +IL++ +G
Sbjct: 121 MEFLQGGALTDIVS--QVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDG 178
Query: 335 RNGFSLVLLDHGIC 348
R S D G C
Sbjct: 179 RVKLS----DFGFC 188
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 275 LTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEG 334
+ M++ G + +L S ++ K A V + + I G +H D N+L+ G
Sbjct: 152 MVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHG 211
Query: 335 RNGFSLVLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQYSR 388
L L D G C +D+T V +C A+ D + L Q G G Y R
Sbjct: 212 H----LKLADFGTCMKMDETGMV-HCD--TAVGTPDYISPEVLKSQGGDGYYGR 258
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 88 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 147
Query: 331 SSEGRNGFSLVLLDHGICKTLDDT 354
S + S + D G+ + ++D
Sbjct: 148 S----DTLSCKIADFGLARLIEDN 167
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 83 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 142
Query: 331 SSEGRNGFSLVLLDHGICKTLDDT 354
S + S + D G+ + ++D
Sbjct: 143 S----DTLSCKIADFGLARLIEDN 162
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 89 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 148
Query: 331 SSEGRNGFSLVLLDHGICKTLDDT 354
S + S + D G+ + ++D
Sbjct: 149 S----DTLSCKIADFGLARLIEDN 168
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 89 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 148
Query: 331 SSEGRNGFSLVLLDHGICKTLDDT 354
S + S + D G+ + ++D
Sbjct: 149 S----DTLSCKIADFGLARLIEDN 168
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 84 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 143
Query: 331 SSEGRNGFSLVLLDHGICKTLDDT 354
S + S + D G+ + ++D
Sbjct: 144 S----DTLSCKIADFGLARLIEDN 163
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 91 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 150
Query: 331 SSEGRNGFSLVLLDHGICKTLDDT 354
S + S + D G+ + ++D
Sbjct: 151 S----DTLSCKIADFGLARLIEDN 170
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 83 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 142
Query: 331 SSEGRNGFSLVLLDHGICKTLDDT 354
S + S + D G+ + ++D
Sbjct: 143 S----DTLSCKIADFGLARLIEDN 162
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 78 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 137
Query: 331 SSEGRNGFSLVLLDHGICKTLDDT 354
S + S + D G+ + ++D
Sbjct: 138 S----DTLSCKIADFGLARLIEDN 157
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 85 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 144
Query: 331 SSEGRNGFSLVLLDHGICKTLDDT 354
S + S + D G+ + ++D
Sbjct: 145 S----DTLSCKIADFGLARLIEDN 164
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 83 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 142
Query: 331 SSEGRNGFSLVLLDHGICKTLDDT 354
S + S + D G+ + ++D
Sbjct: 143 S----DTLSCKIADFGLARLIEDN 162
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 92 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 151
Query: 331 SSEGRNGFSLVLLDHGICKTLDDT 354
S + S + D G+ + ++D
Sbjct: 152 S----DTLSCKIADFGLARLIEDN 171
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 83 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 142
Query: 331 SSEGRNGFSLVLLDHGICKTLDD 353
S + S + D G+ + ++D
Sbjct: 143 S----DTLSCKIADFGLARLIED 161
>pdb|1TQP|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Atp
Length = 282
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 297 NPIKVAKALVEVFAEMIFVH-GFVHGDPHAGNILVSSEG 334
NP +V ++E A+ F H G VHGD N+LVS EG
Sbjct: 194 NPDEVLDXILEEVAK--FYHRGIVHGDLSQYNVLVSEEG 230
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVH--GFVHGDPHAGNILV 330
+++T G VD L + IK K+ ++ M F+ ++H D A NILV
Sbjct: 93 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 152
Query: 331 SSEGRNGFSLVLLDHGICKTLDDT 354
S + S + D G+ + ++D
Sbjct: 153 S----DTLSCKIADFGLARLIEDN 172
>pdb|1TQI|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase
pdb|1TQM|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Amppnp
pdb|1ZAO|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Atp And Manganese Ions
pdb|1ZAR|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Adp And Manganese Ions
Length = 282
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 297 NPIKVAKALVEVFAEMIFVH-GFVHGDPHAGNILVSSEG 334
NP +V ++E A+ F H G VHGD N+LVS EG
Sbjct: 194 NPDEVLDMILEEVAK--FYHRGIVHGDLSQYNVLVSEEG 230
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 275 LTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGF--VHGDPHAGNILVSS 332
+ M++ G LD L+ + ++A L E+ + ++H +H D A N+L+S
Sbjct: 98 IIMEYLGGGSA--LDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSE 155
Query: 333 EGRNGFSLVLLDHGICKTLDDT 354
+G + L D G+ L DT
Sbjct: 156 QG----DVKLADFGVAGQLTDT 173
>pdb|1KM6|A Chain A, Crystal Structure Of Odcase Mutant D70ak72a Complexed With
Omp
Length = 247
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
Query: 282 GCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSE-GRNGFSL 340
GC++ ++ +I K+ +A + A+ I VHGF D + V+ E GR F L
Sbjct: 64 GCRIIAAFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLL 123
Query: 341 VLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQY 386
+ H + I +DEI +G G+ Y
Sbjct: 124 TEMSHPGAEM---------------FIQGAADEIARMGVDLGVKNY 154
>pdb|3LQ3|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 401
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 318 FVHGDPHAGNILVSSEGRNGFSLVLLD 344
F H D GNIL+ SE N SL+L+D
Sbjct: 244 FCHNDIQEGNILLLSEPENADSLMLVD 270
>pdb|3FEG|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 379
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 318 FVHGDPHAGNILVSSEGRNGFSLVLLD 344
F H D GNIL+ SE N SL+L+D
Sbjct: 222 FCHNDIQEGNILLLSEPENADSLMLVD 248
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 270 TTSHVLTMQFCKGCKVDDLDSLKEIKANPIK---VAKALVEVFAEMIFVHGF--VHGDPH 324
+T + M++ G DL +K P++ +A L E+ + ++H +H D
Sbjct: 89 STKLWIIMEYLGGGSALDL-----LKPGPLEETYIATILREILKGLDYLHSERKIHRDIK 143
Query: 325 AGNILVSSEGRNGFSLVLLDHGICKTLDDT 354
A N+L+S +G + L D G+ L DT
Sbjct: 144 AANVLLSEQG----DVKLADFGVAGQLTDT 169
>pdb|3NQM|A Chain A, Crystal Structure Of The Mutant V155s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3NQM|B Chain B, Crystal Structure Of The Mutant V155s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3PC0|A Chain A, Crystal Structure Of The Mutant V155s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine
5'-Monophosphate
pdb|3PC0|B Chain B, Crystal Structure Of The Mutant V155s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine
5'-Monophosphate
Length = 228
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 16/107 (14%)
Query: 282 GCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSE-GRNGFSL 340
GC++ + +I K+ +A + A+ I VHGF D + V+ E GR F L
Sbjct: 64 GCRIIADFKVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLL 123
Query: 341 VLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQYS 387
+ H + I +DEI +G G+ YS
Sbjct: 124 TEMSHPGAEM---------------FIQGAADEIARMGVDLGVKNYS 155
>pdb|2ZZ5|A Chain A, Orotidine Monophosphate Deacarboxylase D70aK72A DOUBLE
MUTANT FROM M. Thermoautotrophicum Complexed With 6-
Cyano-Ump
pdb|2ZZ5|B Chain B, Orotidine Monophosphate Deacarboxylase D70aK72A DOUBLE
MUTANT FROM M. Thermoautotrophicum Complexed With 6-
Cyano-Ump
Length = 252
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
Query: 282 GCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSE-GRNGFSL 340
GC++ ++ +I K+ +A + A+ I VHGF D + V+ E GR F L
Sbjct: 67 GCRIIAAFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLL 126
Query: 341 VLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQY 386
+ H + I +DEI +G G+ Y
Sbjct: 127 TEMSHPGAEM---------------FIQGAADEIARMGVDLGVKNY 157
>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|B Chain B, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|D Chain D, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|E Chain E, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
Length = 371
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 19/92 (20%)
Query: 311 EMIFVHGFVHGDPHAGNILVSSEGRNGFSLVLLDHGICKTLDDTFRVDYCRLWKALILLD 370
E + +HGD A N+L+SS+G + +L H +C D L K+L+ D
Sbjct: 199 EYLHSRRILHGDVKADNVLLSSDGSHA-ALCDFGHAVCLQPDG--------LGKSLLTGD 249
Query: 371 SDEIKHLGEQFGIGQYSRYLPLIFTGRSIDSK 402
+ G + P + GRS D+K
Sbjct: 250 ----------YIPGTETHMAPEVVLGRSCDAK 271
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 275 LTMQFCKGCKVDDLDSLKEIKANPIK------VAKALVEVFAEMIFVHGFVHGDPHAGNI 328
L M++C G D L E+ P++ V ++ A + H +H D AGNI
Sbjct: 92 LVMEYCLGSASD----LLEVHKKPLQEVEIAAVTHGALQGLA-YLHSHNMIHRDVKAGNI 146
Query: 329 LVSSEG 334
L+S G
Sbjct: 147 LLSEPG 152
>pdb|1KLZ|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant D70a Complexed With Ump
Length = 247
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 16/106 (15%)
Query: 282 GCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSE-GRNGFSL 340
GC++ + +I K+ +A + A+ I VHGF D + V+ E GR F L
Sbjct: 64 GCRIIAAFKVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLL 123
Query: 341 VLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQY 386
+ H + I +DEI +G G+ Y
Sbjct: 124 TEMSHPGAEM---------------FIQGAADEIARMGVDLGVKNY 154
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 275 LTMQFCKGCKVDDLDSLKEIKANPIK------VAKALVEVFAEMIFVHGFVHGDPHAGNI 328
L M++C G D L E+ P++ V ++ A + H +H D AGNI
Sbjct: 131 LVMEYCLGSASD----LLEVHKKPLQEVEIAAVTHGALQGLA-YLHSHNMIHRDVKAGNI 185
Query: 329 LVSSEG 334
L+S G
Sbjct: 186 LLSEPG 191
>pdb|3NQ7|A Chain A, Crystal Structure Of The Mutant F71a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3NQ7|B Chain B, Crystal Structure Of The Mutant F71a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
Length = 228
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 16/106 (15%)
Query: 282 GCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSE-GRNGFSL 340
GC++ + +I K+ +A + A+ I VHGF D + V+ E GR F L
Sbjct: 64 GCRIIADAKVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLL 123
Query: 341 VLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQY 386
+ H + I +DEI +G G+ Y
Sbjct: 124 TEMSHPGAEM---------------FIQGAADEIARMGVDLGVKNY 154
>pdb|2IG7|A Chain A, Crystal Structure Of Human Choline Kinase B
pdb|2IG7|B Chain B, Crystal Structure Of Human Choline Kinase B
Length = 401
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 318 FVHGDPHAGNILVSSEGRNGFSLVLLD 344
F H D GNIL+ SE N SL L+D
Sbjct: 244 FCHNDIQEGNILLLSEPENADSLXLVD 270
>pdb|2ZZ3|A Chain A, Covalent Complex Of Orotidine Monophosphate Decarboxylase
D70a Mutant From M. Thermoautotrophicus With 6-Cyano-Ump
pdb|2ZZ3|B Chain B, Covalent Complex Of Orotidine Monophosphate Decarboxylase
D70a Mutant From M. Thermoautotrophicus With 6-Cyano-Ump
Length = 252
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 16/106 (15%)
Query: 282 GCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSE-GRNGFSL 340
GC++ + +I K+ +A + A+ I VHGF D + V+ E GR F L
Sbjct: 67 GCRIIAAFKVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLL 126
Query: 341 VLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQY 386
+ H + I +DEI +G G+ Y
Sbjct: 127 TEMSHPGAEM---------------FIQGAADEIARMGVDLGVKNY 157
>pdb|1KM4|A Chain A, Crystal Structure Of Odcase Mutant K72a Complexed With Ump
Length = 247
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
Query: 282 GCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSE-GRNGFSL 340
GC++ ++ +I K+ +A + A+ I VHGF D + V+ E GR F L
Sbjct: 64 GCRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLL 123
Query: 341 VLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQY 386
+ H + I +DEI +G G+ Y
Sbjct: 124 TEMSHPGAEM---------------FIQGAADEIARMGVDLGVKNY 154
>pdb|2ZZ2|A Chain A, Orotidine Monophosphate Decarboxylase K72a Mutant From M.
Thermoautotrophicum Complexed With 6-Cyano-Ump
pdb|2ZZ2|B Chain B, Orotidine Monophosphate Decarboxylase K72a Mutant From M.
Thermoautotrophicum Complexed With 6-Cyano-Ump
pdb|2ZZ7|A Chain A, Orotidine Monophosphate Decarboxylase K72a Mutant
Complexed With Bmp (Produced From 6-Iodo-Ump)
Length = 252
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
Query: 282 GCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSE-GRNGFSL 340
GC++ ++ +I K+ +A + A+ I VHGF D + V+ E GR F L
Sbjct: 67 GCRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLL 126
Query: 341 VLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQY 386
+ H + I +DEI +G G+ Y
Sbjct: 127 TEMSHPGAEM---------------FIQGAADEIARMGVDLGVKNY 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,350,085
Number of Sequences: 62578
Number of extensions: 548078
Number of successful extensions: 1266
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1263
Number of HSP's gapped (non-prelim): 98
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)