BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008979
(547 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D0L4|ADCK1_MOUSE Uncharacterized aarF domain-containing protein kinase 1 OS=Mus
musculus GN=Adck1 PE=2 SV=1
Length = 525
Score = 305 bits (781), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 164/455 (36%), Positives = 268/455 (58%), Gaps = 17/455 (3%)
Query: 7 KASKILKRTVYLLTATGFTFHATSHSDFLPFPLFPDKIKAGIDGIVRSSRAISTITFTIA 66
KA K+ T L A+G ++ ++ D F G VR RA++T
Sbjct: 4 KALKLASWTSVALAASGVYLYSNNYLDPNDF------------GAVRVGRAVATTAVISY 51
Query: 67 DYKYSLYSLSVGSEDYLCKLSEVHLRSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEY 125
DY SL S+ GSE+YL + S+VHLRSA+R+ +LC N+G ++K GQ + A+ + P+EY
Sbjct: 52 DYLTSLRSVPYGSEEYLQRRSQVHLRSARRLFELCCANRGTFIKVGQHLGALDYLLPEEY 111
Query: 126 SSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQ 185
+STL L QA + +++V+ +LG+ + ++F+S D+ P+ AAS+AQVH A+L +
Sbjct: 112 TSTLKVLHSQAPQSSMQEVRQVIREDLGKEIHDLFLSFDDTPLGAASLAQVHKAVLHDGR 171
Query: 186 EVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRFGWLVSEFAGTISLELDFIQEAK 245
VAVKVQ+P ++ + DI +M L V +FP++ F WLV E + LELDF+ E +
Sbjct: 172 TVAVKVQHPKVQAQSSKDILLMEVLVLAVKQLFPDFEFMWLVDEAKKNLPLELDFLNEGR 231
Query: 246 NSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKAL 305
N+EK A ++ + ++VP + W+ +T VL M+F +G +V+D +++ + + +++ L
Sbjct: 232 NAEKVAHMLRHFDFLKVPQIHWELSTKRVLLMEFVEGGQVNDRAYMEKNQIDVNEISCHL 291
Query: 306 VEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFS-LVLLDHGICKTLDDTFRVDYCRLWK 364
++++EMIFV+GFVH DPH GN+LV G + +VLLDHG+ + L + FR+DYC LW+
Sbjct: 292 GKMYSEMIFVNGFVHCDPHPGNVLVRKRPDTGKAEIVLLDHGLYQVLTEEFRLDYCHLWQ 351
Query: 365 ALILLDSDEIKHLGEQFGIGQYSRYLPLIFTGRSIDS--KSVLGAGMSAEERRKVKQELV 422
+LI D D +K ++ G + T RS DS + + A +SA E +++
Sbjct: 352 SLIWTDMDGLKQYSQRLGAADLYPLFACMLTARSWDSVKQGIGQAPVSATEDSEIRNN-A 410
Query: 423 SLTVADISSFMESLPPNFLAVLRIDGLLRSIVSKL 457
+ + +IS + +P L +L+ + LLRSI + L
Sbjct: 411 ACYLPEISQLLNHVPRQMLLILKTNDLLRSIETTL 445
>sp|Q5M7P6|ADCK1_XENTR Uncharacterized aarF domain-containing protein kinase 1 OS=Xenopus
tropicalis GN=adck1 PE=2 SV=1
Length = 523
Score = 299 bits (766), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 176/514 (34%), Positives = 284/514 (55%), Gaps = 23/514 (4%)
Query: 19 LTATGFTFHATSHSDFLPFPLFPDKIKAGIDGIVRSSRAISTITFTIADYKYSLYSLSVG 78
LT++GF + T H D F G+VR RA+ T DY L + G
Sbjct: 16 LTSSGFFLYGTGHWDPSDF------------GVVRIGRAVLTTAAITWDYLTELRHVKAG 63
Query: 79 SEDYLCKLSEVHLRSAKRILKLCEMNKGFYVKAGQFVAAIRQ-VPKEYSSTLLSLQDQAV 137
+E+Y S+VH RSA R+L LC N+G ++K GQ + A+ VP EY+ TL L QA
Sbjct: 64 TEEYESIKSQVHFRSAHRLLDLCCANRGTFIKVGQHLGALEYLVPPEYTKTLSVLHSQAP 123
Query: 138 PCDFKSIKEVLMSNLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLE 197
F + +V+ +LG+ +SE+F+ +E+P+ AAS+AQVH A+L+ ++VAVKVQ+P ++
Sbjct: 124 CTPFPDVVQVIREDLGKEISEVFVEFEEKPLGAASLAQVHRAVLQDGRKVAVKVQHPKVQ 183
Query: 198 HKMRLDIAIMSFLSKTVTWIFPEYRFGWLVSEFAGTISLELDFIQEAKNSEKTAENFKNN 257
+ DI +M L V IFP++ F WL+ E + LELDF E +N+EK + +
Sbjct: 184 AQSARDILLMEVLLHAVKKIFPQFEFMWLIEEAKKNLPLELDFENEGRNAEKMSAIVSSF 243
Query: 258 EMVQVPHVFWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHG 317
+++P ++W+ +T VL M++ +G +V+D + +K + + +VA+AL ++++EMIFVHG
Sbjct: 244 SFLRIPRIYWELSTKRVLVMEYMEGGQVNDREYMKRNQIDINQVARALGQLYSEMIFVHG 303
Query: 318 FVHGDPHAGNILVSSEGRNGF-SLVLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKH 376
FVH DPH GN+LV ++LLDHG+ + L ++FR+DYC LW+ALI D +I+
Sbjct: 304 FVHCDPHPGNVLVRQNPETLVPEIILLDHGLYQVLTESFRLDYCSLWQALIAADMQQIRI 363
Query: 377 LGEQFGIGQYSRYLPLIFTGRSIDS--KSVLGAGMSAEERRKVKQELVSLTVADISSFME 434
++ G G+ + T RS +S + + +S EE +++ + + +IS +
Sbjct: 364 YSQRLGAGELYPLFACMLTARSWESVNQGIYQNTVSREEALEIRSNAATY-LPEISQLLA 422
Query: 435 SLPPNFLAVLRIDGLLRSIVSKLKA-PQQIRLLAYGKYALYGLAPKSNLKSDFAIDVVFA 493
S+P L +L+ + LLR I + L L + + LA K+D +
Sbjct: 423 SVPRQMLLLLKTNDLLRGIETSLGTHASSSSFLNMSRCCVRALARHRKEKTDSLWSYIHI 482
Query: 494 RFKTTFSYLHLRIILEVLQLLS-----WMRKVKQ 522
TFS L+I VL+L + W+R++ Q
Sbjct: 483 SLAETFSLGQLQIYEIVLRLQASCVGCWIRRMMQ 516
>sp|Q86TW2|ADCK1_HUMAN Uncharacterized aarF domain-containing protein kinase 1 OS=Homo
sapiens GN=ADCK1 PE=2 SV=2
Length = 530
Score = 298 bits (762), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 165/462 (35%), Positives = 262/462 (56%), Gaps = 24/462 (5%)
Query: 7 KASKILKRTVYLLTATGFTFHATSHSDFLPFPLFPDKIKAGIDGIVRSSRAISTITFTIA 66
KA K+ T L A+G F++ + D F G VR RA++T
Sbjct: 4 KALKLASWTSMALAASGIYFYSNKYLDPNDF------------GAVRVGRAVATTAVISY 51
Query: 67 DYKYSLYSLSVGSEDYLCKLS-------EVHLRSAKRILKLCEMNKGFYVKAGQFVAAIR 119
DY SL S+ GSE+YL S +VHLRSA+R+ +LC N+G ++K GQ + A+
Sbjct: 52 DYLTSLKSVPYGSEEYLQLRSKSWPVFLQVHLRSARRLCELCCANRGTFIKVGQHLGALD 111
Query: 120 QV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQPIAAASIAQVHH 178
+ P+EY+STL L QA + I++V+ +LG+ + ++F S D+ P+ AS+AQVH
Sbjct: 112 YLLPEEYTSTLKVLHSQAPQSSMQEIRQVIREDLGKEIHDLFQSFDDTPLGTASLAQVHK 171
Query: 179 AILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRFGWLVSEFAGTISLEL 238
A+L + VAVKVQ+P + + DI +M L V +FPE+ F WLV E + LEL
Sbjct: 172 AVLHDGRTVAVKVQHPKVRAQSSKDILLMEVLVLAVKQLFPEFEFMWLVDEAKKNLPLEL 231
Query: 239 DFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANP 298
DF+ E +N+EK ++ ++ + ++VP + WD +T VL M+F G +V+D D ++ K +
Sbjct: 232 DFLNEGRNAEKVSQMLRHFDFLKVPRIHWDLSTERVLLMEFVDGGQVNDRDYMERNKIDV 291
Query: 299 IKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSE-GRNGFSLVLLDHGICKTLDDTFRV 357
++++ L ++++EMIFV+GFVH DPH GN+LV G +VLLDHG+ + L + FR+
Sbjct: 292 NEISRHLGKMYSEMIFVNGFVHCDPHPGNVLVRKHPGTGKAEIVLLDHGLYQMLTEEFRL 351
Query: 358 DYCRLWKALILLDSDEIKHLGEQFGIGQYSRYLPLIFTGRSIDS--KSVLGAGMSAEERR 415
+YC LW++LI D +K ++ G G + T RS DS + + A ++A E
Sbjct: 352 NYCHLWQSLIWTDMKRVKEYSQRLGAGDLYPLFACMLTARSWDSVNRGISQAPVTATEDL 411
Query: 416 KVKQELVSLTVADISSFMESLPPNFLAVLRIDGLLRSIVSKL 457
+++ + + IS + +P L +L+ + LLR I + L
Sbjct: 412 EIRNNAANY-LPQISHLLNHVPRQMLLILKTNDLLRGIEAAL 452
>sp|Q6INL7|ADCK1_XENLA Uncharacterized aarF domain-containing protein kinase 1 OS=Xenopus
laevis GN=adck1 PE=2 SV=1
Length = 520
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 268/480 (55%), Gaps = 10/480 (2%)
Query: 50 GIVRSSRAISTITFTIADYKYSLYSLSVGSEDYLCKLSEVHLRSAKRILKLCEMNKGFYV 109
G+VR RA+ T DY L + G+E+Y S+VHLRSA R+L LC N+G ++
Sbjct: 35 GVVRIGRAVLTTAAITWDYFTKLRHVEAGTEEYENIKSQVHLRSAHRLLDLCCFNRGTFI 94
Query: 110 KAGQFVAAIRQ-VPKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQPI 168
K GQ +AA+ VP EY+ TL L QA F + +V+ +LG+ +SE+F ++ P+
Sbjct: 95 KVGQHLAALEYLVPPEYTKTLSVLHSQAPCTPFTDVVQVIREDLGKEISEVFEEFEKTPL 154
Query: 169 AAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRFGWLVS 228
AAS+AQVH A+L+ ++VAVKVQ+P ++ + DI IM L V IFP++ F WL+
Sbjct: 155 GAASLAQVHRAVLQDGRKVAVKVQHPKVQAQSSRDILIMEVLLHVVKKIFPQFEFMWLIE 214
Query: 229 EFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGCKVDDL 288
E + LELDF E +N+EK + + +++P ++W+ +T VL M++ +G +V+D
Sbjct: 215 EAKKNLPLELDFQNEGRNAEKMSSIVSSFSFLRIPRIYWELSTKRVLVMEYMEGGQVNDR 274
Query: 289 DSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRN-GFSLVLLDHGI 347
+ +K + + KV+ AL ++++EMIFVHGFVH DPH GN+LV N ++LLDHG+
Sbjct: 275 EYMKRNQIDVNKVSHALGKLYSEMIFVHGFVHCDPHPGNVLVRQNPENCAPEIILLDHGL 334
Query: 348 CKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQYSRYLPLIFTGRSIDS--KSVL 405
+ L ++FR+DYC LW+ALI D + I+ ++ G G+ + T RS +S + +
Sbjct: 335 YQVLTESFRLDYCSLWQALIAADKERIRIYSQRLGAGELYPLFACMLTARSWESVNRGIY 394
Query: 406 GAGMSAEERRKVKQELVSLTVADISSFMESLPPNFLAVLRIDGLLRSIVSKLKAPQQIRL 465
+S EE +++ + + +IS + S+P L +L+ + LLR I + L
Sbjct: 395 ENTVSKEEIHEIRSNAATY-LPEISQLLASVPRQMLLLLKTNDLLRGIETSLGTHSSSSA 453
Query: 466 LAY-GKYALYGLAPKSNLKSDFAIDVVFARFKTTFSYLHLRIILEVLQLLS----WMRKV 520
Y + + LA K+D + TF L++ L+L S W+ V
Sbjct: 454 FFYMSRCCVRALARHRKEKADSLWSYIHISLSETFCLGQLQMYEIALRLQSCIGRWINHV 513
>sp|Q5ZMT7|ADCK1_CHICK Uncharacterized aarF domain-containing protein kinase 1 OS=Gallus
gallus GN=ADCK1 PE=2 SV=1
Length = 519
Score = 286 bits (731), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 254/412 (61%), Gaps = 5/412 (1%)
Query: 50 GIVRSSRAISTITFTIADYKYSLYSLSVGSEDYLCKLSEVHLRSAKRILKLCEMNKGFYV 109
G+VR RAI+T DY SL ++ GSE+Y S+VHLRSA+R+ +LC N+G ++
Sbjct: 32 GVVRVGRAIATTAVITYDYLTSLRNVPYGSEEYDFLKSQVHLRSAERLRELCCANRGTFI 91
Query: 110 KAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQPI 168
K GQ + A+ + P+EY+ TL L QA + I++V+ +LG+ + E+F+S ++ P+
Sbjct: 92 KVGQHLGALDYLLPEEYTRTLKVLHSQAPQSTRQEIEQVIREDLGKEIKELFVSFEDTPL 151
Query: 169 AAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRFGWLVS 228
AAS+AQVH A+L+ + VAVK+Q+P ++ + DI +M L V IFP++ F WLV
Sbjct: 152 GAASLAQVHKAVLQDGRTVAVKIQHPKVQAQSSKDIFLMEVLLLVVKQIFPDFEFMWLVE 211
Query: 229 EFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGCKVDDL 288
E + LELDF+ E +N+EK A+ KN E ++VP ++W+ +T VL M+F +G +V+D
Sbjct: 212 EAKKNLPLELDFLNEGRNAEKVAQMLKNFEFLKVPRIYWELSTRRVLLMEFMEGGQVNDK 271
Query: 289 DSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFS-LVLLDHGI 347
+++ + ++++ L ++++EMIFV+GFVH DPH GN+LV +G + ++LLDHG+
Sbjct: 272 AYMEKNGIDVNEISRNLGKLYSEMIFVNGFVHCDPHPGNVLVKKCPDSGKAYIILLDHGL 331
Query: 348 CKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQYSRYLPLIFTGRSIDS--KSVL 405
+ L ++FR+DYCRLW ALI D ++ + G G + T RS +S + +
Sbjct: 332 YQVLSESFRMDYCRLWLALIKADMKRVQKYSRRLGAGDLYPLFACMLTARSWESVNRGID 391
Query: 406 GAGMSAEERRKVKQELVSLTVADISSFMESLPPNFLAVLRIDGLLRSIVSKL 457
+ +SA E +++ + + I+ + ++P L +L+ + LLR I S L
Sbjct: 392 QSPVSASEDVEIRSNAAAY-LPQITQLLNNVPRQMLLLLKTNDLLRGIESAL 442
>sp|Q54TR5|ABKB_DICDI Probable serine/threonine-protein kinase abkB OS=Dictyostelium
discoideum GN=abkB PE=3 SV=1
Length = 668
Score = 275 bits (703), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 141/393 (35%), Positives = 227/393 (57%), Gaps = 14/393 (3%)
Query: 68 YKYSLYSLSVGSEDYLCKLSEVHLRSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYS 126
YKY L L+ G E + + H +AK ++ LC NKG ++K Q +A++ + P+EY
Sbjct: 219 YKYYLMGLNRGDEGFAENIQIAHKLAAKAMVDLCYQNKGIFIKVAQIIASLDHILPQEYI 278
Query: 127 STLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQ- 185
+L QD A F+ ++++ G+H ++FI + PI +AS+AQVH A L+
Sbjct: 279 KSLSIFQDHAPFVTFEEVEKLFKIETGKHPDDMFIDFERLPINSASLAQVHKAKLKLEND 338
Query: 186 ---EVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRFGWLVSEFAGTISLELDFIQ 242
EVAVKVQYPGL +K + D+ + + +T FP ++F W++ E + +S ELDF+
Sbjct: 339 EIIEVAVKVQYPGLMNKFQKDMDSLDNVLTYITLFFPSFQFSWILGEASSCLSQELDFVN 398
Query: 243 EAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVA 302
EAKNSEK + F N+ + +P V+W+ TT +LTM+F G ++D+ + L ++ + ++
Sbjct: 399 EAKNSEKMKQLFIGNQQLSIPKVYWNHTTKRILTMEFIHGVRIDNREGLDKLGIDLKELY 458
Query: 303 KALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFSLVLLDHGICKTLDDTFRVDYCRL 362
++FA+ IFVHGF+H DPH GN+LV LVLLDHG+ K +D+ R+D+C L
Sbjct: 459 YLFSDIFAQQIFVHGFLHSDPHPGNLLVRKTPNGKPDLVLLDHGLYKKIDENVRLDFCHL 518
Query: 363 WKALILLDSDEIKHLGEQFGIGQYSRYLPLIFTGRSIDSKSVLGAGMSAEERRKVKQELV 422
WK+L L D+ + E+ G G Y+++L ++ L S E R +K+EL
Sbjct: 519 WKSLCLGDAKTSEFYAERLGAGIYAKHLGILLN---------LNPSKSRENLRNMKRELK 569
Query: 423 SLTVADISSFMESLPPNFLAVLRIDGLLRSIVS 455
T+ I+ +++LP L VL+ + L+R I +
Sbjct: 570 DQTLVVINEILKNLPKEILLVLKTNNLIRQITT 602
>sp|Q54P00|ABKD_DICDI Probable serine/threonine-protein kinase abkD OS=Dictyostelium
discoideum GN=abkD PE=2 SV=1
Length = 695
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 158/441 (35%), Positives = 249/441 (56%), Gaps = 8/441 (1%)
Query: 48 IDGIVRSSRAISTITFTIADYKYSLYSLSVGSEDYLCKLSEVHLRSAKRILKLCEMNKGF 107
++ IVR RA+ T + +YK Y+ SE YL K H SA IL LC N G
Sbjct: 203 MNVIVRFYRAMKCATKIMINYKILSYTPEKSSE-YLEKSKICHQESADLILDLCLTNGGL 261
Query: 108 YVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQ 166
Y+KAGQ++A++ + P +Y+ TL LQDQA DF ++ V + +LG + F D
Sbjct: 262 YIKAGQYIASLNHILPIQYTKTLSVLQDQAPWRDFYEVESVFLKDLGNAPNHYFSDFDRL 321
Query: 167 PIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRFGWL 226
PIAAAS+AQVH AI + +EVAVKVQY L+ DI + L V FP++ F W+
Sbjct: 322 PIAAASLAQVHRAITKEGEEVAVKVQYVDLQRNFDGDIFTHNVLLTLVNMAFPDFEFNWM 381
Query: 227 VSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGCKVD 286
E + ELDF QEA N+E+ A++ +N +P VF +++ +LT +F GCK++
Sbjct: 382 AEEMKNVLIKELDFSQEADNAERAAQDLSSNNNAYIPKVFRPYSSKRILTTEFIHGCKIN 441
Query: 287 DLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGR--NGFSLVLLD 344
++ +++ + + V++ +E+ E IF+H FVH DPHAGN+LV N +VLLD
Sbjct: 442 NVQAIRSMGLSEKTVSQRFMEIMCEQIFIHAFVHVDPHAGNVLVRQHPNHPNQPQIVLLD 501
Query: 345 HGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQYSRYLPLIFTGRSIDSKSV 404
HG+ + D+ FR+++C L+K L+L ++ +++ + G+ + + +I R+ + SV
Sbjct: 502 HGLYREYDEEFRLNFCNLYKNLVLCNNKKVEKYSKALGVQNWKLFSTMILM-RNFEGSSV 560
Query: 405 -LGAGMSAEERRKVKQELVSLTVADISSFMESLPPNFLAVLRIDGLLRSIVSKLKAPQQI 463
L +S+EE K+ + + DI+ M+++P + L +LR + LLRSI +L +P
Sbjct: 561 GLSNSISSEELEKLLSGAIE-RLKDINLLMKAMPRHLLLILRNNNLLRSINMELGSPVN- 618
Query: 464 RLLAYGKYALYGLAPKSNLKS 484
R +YA GL S+ S
Sbjct: 619 RFSIMARYAAKGLNSNSSKNS 639
>sp|Q80V03|ADCK5_MOUSE Uncharacterized aarF domain-containing protein kinase 5 OS=Mus
musculus GN=Adck5 PE=2 SV=2
Length = 582
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 155/478 (32%), Positives = 240/478 (50%), Gaps = 17/478 (3%)
Query: 3 LYNMKASKILKRTVYLLTATGFTFHATSHSDFLPFPLFPDKIKAGIDGIVRSSRAISTIT 62
L+ S + T +LL A F A+ K++ +DGI R R++
Sbjct: 46 LWRRALSATVVGTPFLLGAYYFMAEASERR----------KLRLAVDGIGRFGRSVKIGL 95
Query: 63 FTIADYKYS----LYSLSVGSEDYLCKLSEVHLRSAKRILKLCEMNKGFYVKAGQFVAAI 118
F DY + L + S Y+ +S H R+A ++ N G YVK GQ + +
Sbjct: 96 FISTDYWWCTNVVLRGVEENSPKYVEIMSACHQRAADALVAGAIRNGGLYVKLGQGLCSF 155
Query: 119 RQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQPIAAASIAQVH 177
+ P EY TL L+D+A+ F+ + E+ + + +E+F D +P+AAAS+AQVH
Sbjct: 156 NHLLPTEYIQTLRVLEDKALTRGFREVDELFLEDFQALPNELFQEFDYEPMAAASLAQVH 215
Query: 178 HAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRFGWLVSEFAGTISLE 237
A L +VAVKVQY L + D+ + L + V + P + F W++ + GT+ E
Sbjct: 216 RAKLHDGTDVAVKVQYIDLRDRFDGDVQTLELLLRLVELMHPSFGFSWVLQDLKGTLVQE 275
Query: 238 LDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGCKVDDLDSLKEIKAN 297
LDF E +N+E+ A+ K+ V +P V WD ++ VLT FC GCKV+D++ +K
Sbjct: 276 LDFENEGRNAERCAQELKHFHYVVIPRVHWDRSSKRVLTADFCNGCKVNDMEGIKSQGLA 335
Query: 298 PIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFSLVLLDHGICKTLDDTFRV 357
VAK L++ FAE IF GF+H DPH GN+LV LVLLDHG+ + LD+ R
Sbjct: 336 VQDVAKKLIQTFAEQIFHTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRS 395
Query: 358 DYCRLWKALILLDSDEIKHLGEQFGIGQYSRYLPLIFTGRSIDSKSVLGAGMSAEERRKV 417
C+LW+A+IL D+ +K G+ Y + ++ R + + G+ + + E
Sbjct: 396 SLCQLWRAIILRDNAAMKKHAAALGVQDYMLFSEVLMQ-RPVRLGQLWGSHLISREEAAY 454
Query: 418 KQELVSLTVADISSFMESLPPNFLAVLRIDGLLRSIVSKLKAPQQIRLLAYGKYALYG 475
Q++ I +++LP L VLR +R+I S L P R K A++G
Sbjct: 455 MQDMAREHFDGIMEVLKALPRPMLLVLRNINTVRAINSNLGTPVD-RYFLMAKSAVWG 511
>sp|O04212|Y2090_ARATH Putative ABC1 protein At2g40090 OS=Arabidopsis thaliana
GN=At2g40090 PE=2 SV=2
Length = 538
Score = 245 bits (626), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 175/548 (31%), Positives = 273/548 (49%), Gaps = 44/548 (8%)
Query: 8 ASKILKRTVYLLTATGFTFHATSHSDFLPFPLFPDK-IKAGIDGIVRSSRAISTITFTIA 66
A++ L RT L G S + F+ P +K VR R T
Sbjct: 2 AARSLWRTRTKLLVVGTALCGGSGAAFIASSDDPSTTLKLCTSIPVRLYRNTVTAASIAF 61
Query: 67 DYKYSLYSLSVGSEDYLCKLSEVHLRSAKRILKLCEMNKGFYVKAGQFVAAIRQ-VPKEY 125
DY+YSL L+ GS + EVHLRSA+++ +LC N G Y+K GQ + + VP+EY
Sbjct: 62 DYEYSLLGLAEGSSERAKVKHEVHLRSAQKLQELCFKNGGIYIKLGQHIGQLEYLVPEEY 121
Query: 126 SSTLL-SLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQPIAAASIAQVHHAILRGN 184
T+ S+ ++ ++ + EV +G+ ++F D PIA+AS+AQVH A
Sbjct: 122 VRTMRESMLNKCPISSYEQVCEVFKKEVGEMPDQVFAEFDPVPIASASLAQVHVARTHDG 181
Query: 185 QEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRFGWLVSEFAGTISLELDFIQEA 244
++VAVKVQ+ + D A + L T+ IFP + + WL+ E + ++ ELDF+ EA
Sbjct: 182 KKVAVKVQHAHMTDTAAADTAAVGVLVNTLHRIFPSFDYRWLLDEMSESLPKELDFLVEA 241
Query: 245 KNSEKTAENFKN-----NEMVQVPHVFWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANPI 299
KN+EK +NF+ E V P ++W+ +TS +LTM+F G +V+D+D ++++ P
Sbjct: 242 KNNEKCLDNFRKLSPHIAEYVYAPTIYWNLSTSKLLTMEFMDGAQVNDVDKIRKLGIQPY 301
Query: 300 KVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSE--------GRNGFSLVLLDHGICKTL 351
+V+K + + FAEM+F HGFVH DPHA N++V + G+ LV+LDHG+ K L
Sbjct: 302 EVSKLVSQTFAEMMFKHGFVHCDPHAANLIVRPDPSGKRNIYGKRKPQLVILDHGLYKEL 361
Query: 352 DDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQYSRYLPLIFTG------------RSI 399
D R +Y LWKAL+ D+ IK E+ G G L ++F G S+
Sbjct: 362 DFNTRFNYASLWKALVFSDAKAIKEHSEKLGAGD---DLYVLFAGILTMRPWKQVIDTSV 418
Query: 400 DSKSVLGAGMSAEERRKVKQELVSLTVADISSFMESLPPNFLAVLRIDGLLRSIVSKLKA 459
D + G E Q S ++IS + LP L +L+ + LRS+ ++L
Sbjct: 419 DHLVIQGNKEDVSEL----QMYASQYFSEISELLRRLPRVILLMLKTNDCLRSVNNELMQ 474
Query: 460 PQQIR-LLAYGKYALYGL--APKSNLKSDFAIDVVFARFKTTFSYLHLRIILEVLQLLSW 516
+ L GK + + A ++ KS + K F + L V+Q W
Sbjct: 475 GSSLESFLIIGKVSSQAVLEAKRAEKKS------LMKWLKVWFEGFSVEARLWVMQFALW 528
Query: 517 MRKVKQLL 524
+ +V++ L
Sbjct: 529 ILQVRKSL 536
>sp|Q3MIX3|ADCK5_HUMAN Uncharacterized aarF domain-containing protein kinase 5 OS=Homo
sapiens GN=ADCK5 PE=2 SV=2
Length = 580
Score = 229 bits (584), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/423 (32%), Positives = 217/423 (51%), Gaps = 6/423 (1%)
Query: 43 KIKAGIDGIVRSSRAISTITFTIADYKYS----LYSLSVGSEDYLCKLSEVHLRSAKRIL 98
+++ +DG+ R R++ DY + L + S YL +S H R+A ++
Sbjct: 76 RMRLVVDGMGRFGRSLKVGLQISLDYWWCTNVVLRGVEENSPGYLEVMSACHQRAADALV 135
Query: 99 KLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLS 157
N G YVK GQ + + + P EY+ TL L+D+A+ F+ + E+ + +
Sbjct: 136 AGAISNGGLYVKLGQGLCSFNHLLPPEYTRTLRVLEDRALKRGFQEVDELFLEDFQALPH 195
Query: 158 EIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWI 217
E+F D QPIAAAS+AQVH A L VAVKVQY L + DI + L + V +
Sbjct: 196 ELFQEFDYQPIAAASLAQVHRAKLHDGTSVAVKVQYIDLRDRFDGDIHTLELLLRLVEVM 255
Query: 218 FPEYRFGWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTM 277
P + F W++ + GT++ ELDF E +N+E+ A + V VP V WD ++ VLT
Sbjct: 256 HPSFGFSWVLQDLKGTLAQELDFENEGRNAERCARELAHFPYVVVPRVHWDKSSKRVLTA 315
Query: 278 QFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNG 337
FC GCKV+D+++++ +A+ L++ FAE IF GF+H DPH GN+LV
Sbjct: 316 DFCAGCKVNDVEAIRSQGLAVHDIAEKLIKAFAEQIFYTGFIHSDPHPGNVLVRKGPDGK 375
Query: 338 FSLVLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQYSRYLPLIFTGR 397
LVLLDHG+ + L++ R C+LW+A+IL D ++ G+ Y + ++ R
Sbjct: 376 AELVLLDHGLYQFLEEKDRAALCQLWRAIILRDDAAMRAHAAALGVQDYLLFAEMLMQ-R 434
Query: 398 SIDSKSVLGAGMSAEERRKVKQELVSLTVADISSFMESLPPNFLAVLRIDGLLRSIVSKL 457
+ + G+ + + E ++ + + + LP L VLR +R+I L
Sbjct: 435 PVRLGQLWGSHLLSREEAAYMVDMARERFEAVMAVLRELPRPMLLVLRNINTVRAINVAL 494
Query: 458 KAP 460
AP
Sbjct: 495 GAP 497
>sp|O60111|YG62_SCHPO ABC1 family protein C15C4.02 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBC15C4.02 PE=3 SV=2
Length = 557
Score = 206 bits (524), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 142/486 (29%), Positives = 240/486 (49%), Gaps = 36/486 (7%)
Query: 20 TATGFTFHATSHSDFLPFPLFP--------------DKIKAGIDGIVRSSRAISTITFTI 65
+ FT HA H++F + D +K R+ R +
Sbjct: 23 SCISFTHHAREHTNFKKPAVVGASITLMASVALVDFDPVKHAGVSSKRAYRVVLAGFLCF 82
Query: 66 ADYKYSLYSLSVGSEDYLCKLSEVHLRSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKE 124
+DYK L S E+ LSE HLR A+R LK+ E N G Y+K GQ ++A+ V PKE
Sbjct: 83 SDYKKVLGSSYASEEERQLALSECHLRCAERSLKVFEENGGIYIKIGQHLSAMGYVIPKE 142
Query: 125 YSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQPIAAASIAQVHHAILRGN 184
+++T++ LQD+ K I + + G+ L E F D + AS+AQVH A L+ +
Sbjct: 143 WTNTMVKLQDRCPSTSLKDIDHLFRVDTGKGLDETFDEFDPIALGVASLAQVHKARLKDS 202
Query: 185 Q-EVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRFGWLVSEFAGTISLELDFIQE 243
VAVKVQ+P + LD+++ ++ K + FP+++ WL E ++ ELDF +E
Sbjct: 203 DVWVAVKVQHPSVSLNSPLDLSMTRWVFKAIKTFFPDFKLMWLADEIERSLPQELDFTRE 262
Query: 244 AKNSEKTAENFKN-NEMVQVPHVFWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVA 302
AKNS +T E+F + + + VP V W + +L M++ G ++D+L + E + V+
Sbjct: 263 AKNSIETKEHFAHLSTSLYVPEVMW--SKPRILVMEYVAGARIDNLSFMDEHSISRDLVS 320
Query: 303 KALVEVFAEMIFVH-GFVHGDPHAGNILVSSEGRN-----GFSLVLLDHGICKTLDDTFR 356
+ +F EMIF G +H DPH GN+L+ S+ +N + +VLLDHG+ + + +
Sbjct: 321 VDICHIFNEMIFGKGGHLHCDPHGGNVLIRSKPKNSKSPRNYEIVLLDHGLYRDIPHELQ 380
Query: 357 VDYCRLWKALILLDSDEIKHLGEQFGIGQYSRYLPLI---FTGR---SIDSKSVLGAGMS 410
VDY +W +I + +K ++ P+ TGR S+ S + G
Sbjct: 381 VDYANMWLNIINFNEKNLKFYAKKVA-NVSDENFPIFATAITGRPYKSLKSLPIGGPNHE 439
Query: 411 AEERRKVKQELVSLTVADISSFMESLPPNFLAVLRIDGLLRSIVSKLK---APQQIRLLA 467
E+++ + + I + ++P L +++ + L+RS+ LK P+++ L+
Sbjct: 440 EEQKKFISALQKGGMLQSIIRLLSTMPRLTLLLMKTNDLVRSLDENLKTKSGPEKLYLIM 499
Query: 468 YGKYAL 473
+Y L
Sbjct: 500 -ARYCL 504
>sp|Q06567|YL253_YEAST ABC1 family protein YLR253W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YLR253W PE=1 SV=1
Length = 569
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 127/445 (28%), Positives = 212/445 (47%), Gaps = 29/445 (6%)
Query: 40 FPDKIKAGIDGIVRSSRAISTITFTIADYKYSLYSLSVGSEDYLCKLSEVHLRSAKRILK 99
F D +K R + T YK +L ++ L++ H A L
Sbjct: 55 FHDSVKHTALTTKRIAVVTQATTRCFYHYKRALNKSYENKKEREVALNKCHKMCALITLH 114
Query: 100 LCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSE 158
N G Y+K GQ + A+ + PKE++ T++ LQD ++ I E+ +LG + +
Sbjct: 115 ALRSNGGIYIKLGQHIGAMTYLLPKEWTDTMIPLQDHCPESTYEEIDELFKEDLGTSIED 174
Query: 159 IFISLDEQPIAAASIAQVHHAILRGNQ----EVAVKVQYPGLEHKMRLDIAIMSFLSKTV 214
+F+ ++ PI AS+AQVH A L+ + VAVK Q+P L+ + LD+ + + + +
Sbjct: 175 MFLEFNKTPIGVASLAQVHVAKLKNSDGKGSSVAVKCQHPSLKEFIPLDVMLTRTVFELL 234
Query: 215 TWIFPEYRFGWLVSEFAGTISLELDFIQEAKNSEKTAE---NFKNNEMVQVPHVFWDFTT 271
FP+Y WL E +I +EL+F +EA+N+EKT FK +++P V
Sbjct: 235 DVFFPDYPLTWLGDELQSSIYVELNFTKEAENAEKTRHYFSKFKKQTALKIPKVI----E 290
Query: 272 SH--VLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGF-VHGDPHAGNI 328
SH +L M++ G ++DDL+ + + +V+ L +F MIF +H DPH GN+
Sbjct: 291 SHKRILIMEYVGGKRLDDLEYIDSHGISRSEVSSCLSHIFNNMIFTPNVGIHCDPHGGNL 350
Query: 329 LVSS------EGRNGFSLVLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFG 382
+ S G + F +VL DHG+ + R Y + W +L L D D+ K G
Sbjct: 351 AIRSVKPAKDNGYHNFEIVLFDHGLYRYPSTRTRRLYAKFWLSL-LFDKDQTKMKKYAKG 409
Query: 383 IGQYS-RYLPLI---FTGRSIDS--KSVLGAGMSAEERRKVKQELVSLT-VADISSFMES 435
+ PL+ TGRSID+ + + EE + ++ T ++D+ S +
Sbjct: 410 FANITDEQFPLLAAAITGRSIDAALNYDISTSRTQEEMDVMANGILEGTLLSDLMSILSR 469
Query: 436 LPPNFLAVLRIDGLLRSIVSKLKAP 460
+P L +L+ + L R + L+ P
Sbjct: 470 IPRVVLLILKTNDLTRHLDECLQNP 494
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 151/256 (58%), Gaps = 13/256 (5%)
Query: 108 YVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQ 166
+VK GQ ++ R + P EY+ L LQD+ P D ++V+ +LG+ + E+F+ D +
Sbjct: 63 FVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFVDFDLK 122
Query: 167 PIAAASIAQVHHAILRG-----NQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPE- 220
P+A+AS+AQVH A LR +EVAVKV PG+ + D+++M L+ V +F +
Sbjct: 123 PVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVEKLFADG 182
Query: 221 --YRFGWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQ 278
+ +V+EF + ELD + EA N+ + NFK ++M+ VP VF+D+++ VLT++
Sbjct: 183 KRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSREVLTLE 242
Query: 279 FCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGF 338
+ G V ++ L+E + K+++ VE+F +F HGF H D H GNI V+++GR
Sbjct: 243 WMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFVAADGR--- 299
Query: 339 SLVLLDHGICKTLDDT 354
+ LD GI +L DT
Sbjct: 300 -YIALDFGIVGSLTDT 314
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 165/300 (55%), Gaps = 18/300 (6%)
Query: 68 YKYSLYSL--SVGSEDYLCKLSEVHLRSAK--------RILKLCEMNKGFYVKAGQFVAA 117
Y+Y L L S+ ++C L ++ +S+K R+ E ++K GQ ++
Sbjct: 15 YRYRLAGLCASLMGSGWICALLKMMPQSSKLKNEPPAVRLRLALESLGPIFIKFGQVLST 74
Query: 118 IRQ-VPKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQPIAAASIAQV 176
+P +Y+ L LQD+ P D + +E + +LGQ + +++ + +PIA+ASIAQV
Sbjct: 75 RPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQV 134
Query: 177 HHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPE---YRFGWLVSEFAGT 233
H A L ++VAVKV P L + D+++M F + V +F + + +V+EF
Sbjct: 135 HKARLHSGEQVAVKVLRPNLLPVIEQDLSLMRFGAGWVERLFADGKRLKPREVVAEFDKY 194
Query: 234 ISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGCKVDDLDSLKE 293
+ ELD ++EA N+ + NF+N++M+ VP VF+D+ TS VLT+++ G V D+ LK
Sbjct: 195 LHDELDLMREAANASQLGRNFQNSDMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKA 254
Query: 294 IKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFSLVLLDHGICKTLDD 353
+ K+A VE+F +F GF H D H GNILV+++ R + LD GI TL D
Sbjct: 255 DGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNILVAADNR----YIALDFGIVGTLTD 310
>sp|O42653|YF9E_SCHPO ABC1 family protein C10F6.14c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC10F6.14c PE=3 SV=1
Length = 535
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 174/359 (48%), Gaps = 22/359 (6%)
Query: 50 GIVRSSRAISTITFTIADYKYSLYSLSVGSEDYLCKLSEVHLRSAKRILKLCEMNKGFYV 109
+ RS R + T + ADYK + SE K+ +H R A+R+ K N G Y+
Sbjct: 72 ALTRSIRTVYTASIIAADYKLNF------SEKKADKIDALHQRVAQRLFKTIYKNGGLYI 125
Query: 110 KAGQFVA-AIRQVPKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQPI 168
K GQ +A +P+ Y + D A +++ ++++ G+ + E+F S++++
Sbjct: 126 KMGQIIAMQSNNLPEAYGKAFQGMFDNAPQVEWEELQDIFKEQYGRPVEEVFASIEKRAA 185
Query: 169 AAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTV-TWIF--PEYRFGW 225
A+ASIAQVH A+L ++VAVK+Q P + +M D+ + ++ WIF P Y +
Sbjct: 186 ASASIAQVHRAVLPSGEKVAVKIQKPDVAKQMSWDLLVYKYMMYVYDKWIFHIPLY---F 242
Query: 226 LVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQ----VPHVFWDFTTSHVLTMQFCK 281
V + + E+DF EA NSE E + + ++ +P V+ + + V+ ++
Sbjct: 243 TVDYVSERLRSEVDFTTEANNSEHAREGVEETDYLRDKIYIPKVYKEISGKRVMVTEWAD 302
Query: 282 GCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFSLV 341
G + D +L E + ++ L A +F VH DPH GNILV V
Sbjct: 303 GIPLYDQTALSEAGMSKKEILTNLFRFLAFQMFHSKQVHCDPHPGNILVRKNQAGLCQTV 362
Query: 342 LLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQYSRYLPLIFTGRSID 400
+LDHG+ + FR ++ L+ A LD I + + +GIGQ P +F R ++
Sbjct: 363 ILDHGLYVFESEKFRKEFALLFTAAYSLDKKSILQVMDAWGIGQ-----PELFANRMLN 416
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 162/300 (54%), Gaps = 18/300 (6%)
Query: 68 YKYSLYSL--SVGSEDYLCKLSEVHLRSAK--------RILKLCEMNKGFYVKAGQFVAA 117
Y+Y L L S+ ++C L ++ +S+K R+ E ++K GQ ++
Sbjct: 15 YRYRLAGLCASLMGSGWICALLKMMPQSSKLKNEPPAVRLRLALESLGPIFIKFGQVLST 74
Query: 118 IRQ-VPKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQPIAAASIAQV 176
+P +Y+ L LQD+ P D + +E + +LGQ + +++ + +PIA+ASIAQV
Sbjct: 75 RPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQV 134
Query: 177 HHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRFG---WLVSEFAGT 233
H A L + VAVKV P L + D+++M F + V +F + R +V+EF
Sbjct: 135 HKARLHSGERVAVKVLRPNLLPLIEQDLSLMRFGAAWVERLFSDGRRLKPLEVVAEFDKY 194
Query: 234 ISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGCKVDDLDSLKE 293
+ ELD ++EA N+ + NF N+ M+ VP VF+D+ TS VLT+++ G V D+ LK
Sbjct: 195 LHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKA 254
Query: 294 IKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFSLVLLDHGICKTLDD 353
+ K+A VE+F +F GF H D H GNILV+++ R + LD GI TL D
Sbjct: 255 DGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNILVAADNR----YIALDFGIVGTLTD 310
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 137/257 (53%), Gaps = 14/257 (5%)
Query: 108 YVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQ 166
+VK GQ ++ R + P + + L LQD+ P D K ++ +LG+ LS +F D
Sbjct: 64 FVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERSLGKPLSALFHRFDHH 123
Query: 167 PIAAASIAQVHHAILRGN----QEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYR 222
P+A+ASIAQVH A LRG +EVAVKV PG+ + D+A+M TW+ +
Sbjct: 124 PVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALMR---DVATWMEKLWA 180
Query: 223 FG------WLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLT 276
G +V+EF + ELD ++EA N+ + NF +E++ VP VFWD+ TS V
Sbjct: 181 DGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSELLLVPEVFWDWCTSEVFV 240
Query: 277 MQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRN 336
M+ G +V D L+ + K+A+ VE+F +F GF H D H GNILVS +
Sbjct: 241 MERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADMHPGNILVSVAPES 300
Query: 337 GFSLVLLDHGICKTLDD 353
+ LD GI L +
Sbjct: 301 LGRYIALDFGIVGALSE 317
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 163/337 (48%), Gaps = 28/337 (8%)
Query: 53 RSSRAISTITFTIADYKYSLYSLSVGSEDYLCKLSEV-------HLRSAKRILKLCEMNK 105
R +R I TI + + Y LS + +L ++ V +R+ + E
Sbjct: 3 RFARGI-TIVWVVLRYGLDELVLSTFRQPWLRAVTRVITFGRKLDAPRGQRLREALESLG 61
Query: 106 GFYVKAGQFVAAIRQ-VPKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLD 164
+VK GQ ++ R +P + + L LQD+ P D + + + E+F+S D
Sbjct: 62 PIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFD 121
Query: 165 EQPIAAASIAQVHHAILRGNQ----EVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPE 220
QP+A+ASIAQVH A++R Q EVAVKV PG+ + D+A+M ++ V + +
Sbjct: 122 RQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMAGWVESLSAD 181
Query: 221 ---YRFGWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTM 277
+ +V+EF + ELD ++EA N+ + N + ++V +P VFWDF + VL M
Sbjct: 182 GKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVM 241
Query: 278 QFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNG 337
+ KG ++ +D L+ + K+A+ V +F +F GF H D H GNI VS
Sbjct: 242 ERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETF 301
Query: 338 FSLVLLDHGICKTLDD------------TFRVDYCRL 362
+ LD GI TL + FR DY R+
Sbjct: 302 GRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRV 338
>sp|B3PH50|UBIB_CELJU Probable ubiquinone biosynthesis protein UbiB OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiB PE=3 SV=1
Length = 552
Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 153/296 (51%), Gaps = 13/296 (4%)
Query: 91 LRSAKRILKLCEMNKGFYVKAGQFVAAIRQ-VPKEYSSTLLSLQDQAVPCDFKSIKEVLM 149
L +R+ + CE +VK GQ ++ VP + L LQD P + ++
Sbjct: 46 LSRGERLRRACEDLGPIFVKFGQLLSTRPDLVPADIVLELNHLQDNVTPFSKGEFQRIVE 105
Query: 150 SNLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSF 209
S+LG ++E+F S + +P+A+AS+AQVH A+L+ +EV +KV PG++ + DIA+
Sbjct: 106 SSLGASVAEVFASFNIEPLASASVAQVHTAVLKDGREVVIKVIRPGIDKVIAQDIAL--- 162
Query: 210 LSKTVTWIFPEYRFG------WLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVP 263
L + W+ G +V ++ TI ELD +EA N + NF N+ ++ VP
Sbjct: 163 LLRVARWVENNTLDGKRLHPVEIVEDYRTTIFDELDLQREAANGSQLRRNFLNSPLLYVP 222
Query: 264 HVFWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDP 323
V+W++T ++VL M+ G V DL +L + + K+A+ VE+F +F H F H D
Sbjct: 223 EVYWEYTRTNVLVMERIYGIPVTDLAALNAQQTDMKKLAERGVEIFFTQVFEHNFFHADM 282
Query: 324 HAGNILVSSEGRNGFSLVLLDHGICKTLDDTFRVDYCRLWKALILLDSDEIKHLGE 379
H GNI V+ E + + +D I +L R D L + L+ + + + + E
Sbjct: 283 HPGNIFVAHEHPSAPQYIAVDMAIVGSLT---RADQYYLARNLLAMFRRDYRQVAE 335
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 163/337 (48%), Gaps = 28/337 (8%)
Query: 53 RSSRAISTITFTIADYKYSLYSLSVGSEDYLCKLSEV-------HLRSAKRILKLCEMNK 105
R +R I TI + + Y LS + +L ++ V +R+ + E
Sbjct: 3 RFARGI-TIVWVVLRYGLDELVLSTFRQPWLRAVTRVITFGRKLDAPRGQRLREALESLG 61
Query: 106 GFYVKAGQFVAAIRQ-VPKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLD 164
+VK GQ ++ R +P + + L LQD+ P D + + + E+F+S D
Sbjct: 62 PIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFD 121
Query: 165 EQPIAAASIAQVHHAILRGNQ----EVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPE 220
QP+A+ASIAQVH A++R Q EVAVKV PG+ + D+A+M ++ V + +
Sbjct: 122 RQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMAGWVESLSAD 181
Query: 221 ---YRFGWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTM 277
+ +V+EF + ELD ++EA N+ + N + ++V +P VFWDF + VL M
Sbjct: 182 GKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVM 241
Query: 278 QFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNG 337
+ KG ++ ++ L+ + K+A+ V +F +F GF H D H GNI VS
Sbjct: 242 ERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETF 301
Query: 338 FSLVLLDHGICKTLDD------------TFRVDYCRL 362
+ LD GI TL + FR DY R+
Sbjct: 302 GRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRV 338
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 142/264 (53%), Gaps = 5/264 (1%)
Query: 92 RSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMS 150
R A+ L L ++ ++K GQ ++ R + P + + L+ LQD+ P D K ++ S
Sbjct: 55 RGARLRLALQDLGP-IFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPKQAVALIES 113
Query: 151 NLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFL 210
LG + E+F D +P+A+AS+AQVH A L+ +EV VKV PGL+ + D+A + +
Sbjct: 114 QLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLI 173
Query: 211 SKTVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFW 267
+K + R +V ++ TI ELD ++EA N+ + NF+ +E++ VP V+W
Sbjct: 174 AKGAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYW 233
Query: 268 DFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGN 327
D VL M+ G V D+ +L + + + +A+ VEVF +F H F H D H GN
Sbjct: 234 DLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRHSFFHADMHPGN 293
Query: 328 ILVSSEGRNGFSLVLLDHGICKTL 351
I VS+ + +D GI +L
Sbjct: 294 IFVSTVKPWSPQYIAIDCGIVGSL 317
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 147/264 (55%), Gaps = 5/264 (1%)
Query: 92 RSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMS 150
R A+ L L ++ ++K GQ ++ R + P++ + L+ LQD+ P D + +++
Sbjct: 55 RGARLRLALQDLGP-IFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEE 113
Query: 151 NLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFL 210
LG+ +SE+F D +P+A+AS+AQVH A L+ +EV VKV PGL+ + D+A + L
Sbjct: 114 QLGKKISEVFSRFDVEPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIAQDLAWLFIL 173
Query: 211 SKTVTWIFPEYRFGW---LVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFW 267
++ + + R +VS++ TI ELD ++EA N+ + NF+ + ++ VP V+W
Sbjct: 174 ARAAEKVSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYW 233
Query: 268 DFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGN 327
D+ VL M+ G +V DL +L + + + +A+ VE+F +F F H D H GN
Sbjct: 234 DWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGN 293
Query: 328 ILVSSEGRNGFSLVLLDHGICKTL 351
I VS+ + +D GI +L
Sbjct: 294 IFVSTVNPWSPQYIAIDCGIVGSL 317
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 133/249 (53%), Gaps = 8/249 (3%)
Query: 108 YVKAGQFVAAIRQ-VPKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQ 166
++K GQ ++ V +++ L+ LQDQ P D +++ LG + E + +
Sbjct: 84 FIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKVDEAYREISAH 143
Query: 167 PIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFP---EYRF 223
P+AAAS+ QV+ A+L +EVAVKVQ P L ++ LD+ +M ++ P +
Sbjct: 144 PVAAASLGQVYRAMLFSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFGRFLPLNLGHDL 203
Query: 224 GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGC 283
+V EF + E+D++ E +N+EK AENF + V+VP ++W ++ VLT+++ +G
Sbjct: 204 TLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGF 263
Query: 284 KVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFSLVLL 343
K+ D D ++ +P + + V + HGF H DPH GN+ + +GR + +
Sbjct: 264 KLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAY----I 319
Query: 344 DHGICKTLD 352
D G+ L+
Sbjct: 320 DFGMMDQLE 328
>sp|P96936|Y647_MYCTU Uncharacterized protein Rv0647c/MT0675 OS=Mycobacterium
tuberculosis GN=Rv0647c PE=3 SV=1
Length = 488
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 138/258 (53%), Gaps = 16/258 (6%)
Query: 108 YVKAGQFVAAIRQVPKEYSSTL----LSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISL 163
YVK GQ +A+ P + +L L D+ P + ++ + LG + +F S
Sbjct: 107 YVKFGQIIAS---SPGAFGESLSREFRGLLDRVPPAKTDEVHKLFVEELGDEPARLFASF 163
Query: 164 DEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRF 223
+E+P A+ASIAQVH+A LR +EV VK+Q PG+ ++ D+ I+ ++TV R
Sbjct: 164 EEEPFASASIAQVHYATLRSGEEVVVKIQRPGIRRRVAADLQILKRFAQTVELAKLGRRL 223
Query: 224 GW--LVSEFAGTISLELDFIQEAKNSEKTAENFKNNEM---VQVPHVFWDFTTSHVLTMQ 278
+V++FA ++ ELDF EA++ E + + + ++VP V WDFTT VLTM+
Sbjct: 224 SAQDVVADFADNLAEELDFRLEAQSMEAWVSHLHASPLGKNIRVPQVHWDFTTERVLTME 283
Query: 279 FCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGF 338
G ++D+ ++++ + +++ KAL+ E HG HGD HAGN+ V GR
Sbjct: 284 RVHGIRIDNAAAIRKAGFDGVELVKALLFSVFEGGLRHGLFHGDLHAGNLYVDEAGR--- 340
Query: 339 SLVLLDHGICKTLDDTFR 356
+V D GI +D R
Sbjct: 341 -IVFFDFGIMGRIDPRTR 357
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 153/321 (47%), Gaps = 26/321 (8%)
Query: 108 YVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQ 166
++K GQ ++ + P EY LQD+ P D + V+ L + EIF +
Sbjct: 72 FIKIGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVT 131
Query: 167 PIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFP------- 219
P+A+AS+ QVH A+L + V VKVQ PGL+ + LD ++ + P
Sbjct: 132 PLASASLGQVHRAVLPTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQ 191
Query: 220 EYRFGWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQF 279
+Y + EF + LE+D+I E KN+E+ +NF + V+VP ++W +TT VLT+++
Sbjct: 192 KYEIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEY 251
Query: 280 CKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFS 339
G KVDD +L+ N V + + + + + V GF DPH GN+ V S+G
Sbjct: 252 LPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQG----D 307
Query: 340 LVLLDHG------------ICKTLDDTFRVDYCRLWKALILLDSDEIKHLGEQFGIGQYS 387
L+ D G + +T R D ++ +ALI + E K G+ I +
Sbjct: 308 LIFYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPK--GDLSPIKRII 365
Query: 388 RYLPLIFTGRSIDSKSVLGAG 408
+L F + ID K+ G
Sbjct: 366 NFLLDNFRDKPIDIKAFDQVG 386
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 140/266 (52%), Gaps = 5/266 (1%)
Query: 92 RSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMS 150
R A+ L L ++ ++K GQ ++ R + P + + L LQDQ P ++
Sbjct: 55 RGARLRLALEDLGP-IFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIER 113
Query: 151 NLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFL 210
LG +S++F D QP+A+AS+AQVH A L+ +EV VKV PGL+ +R D+A + L
Sbjct: 114 QLGAPVSQLFARFDSQPLASASVAQVHAAQLKSGEEVVVKVVRPGLKPVIRQDLAWLFLL 173
Query: 211 SKTVTWIFPE---YRFGWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFW 267
++ + R +VS++ TI ELD ++EA N+ + NF+ + ++ VP V+W
Sbjct: 174 ARIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQVYW 233
Query: 268 DFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGN 327
D VL M+ G V DL +L + + + +A+ VE+F +F F H D H GN
Sbjct: 234 DLCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGN 293
Query: 328 ILVSSEGRNGFSLVLLDHGICKTLDD 353
I VS+ + +D GI +L D
Sbjct: 294 IFVSTRTPWSPQYIAIDCGIIGSLTD 319
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 144/266 (54%), Gaps = 5/266 (1%)
Query: 92 RSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMS 150
R A+ L L ++ ++K GQ ++ R + P + ++ L LQD+ P + + +
Sbjct: 56 RGARLRLALQDLGP-IFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEE 114
Query: 151 NLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFL 210
LG + ++F + +P+A+AS+AQVH A L+ +EV VKV P LE +R DIA + L
Sbjct: 115 QLGAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFIL 174
Query: 211 SKTVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFW 267
++ + E R +VS++ TI ELD ++EA N+ + NF+ + ++ VP V+W
Sbjct: 175 ARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYW 234
Query: 268 DFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGN 327
D+ VL M+ G V DL++L++ + + +A+ VE+F +F F H D H GN
Sbjct: 235 DWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGN 294
Query: 328 ILVSSEGRNGFSLVLLDHGICKTLDD 353
I VS+ + +D GI +L D
Sbjct: 295 IFVSTRAPWSPQYIAVDCGIVGSLTD 320
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 144/266 (54%), Gaps = 5/266 (1%)
Query: 92 RSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMS 150
R A+ L L ++ ++K GQ ++ R + P + ++ L LQD+ P + + +
Sbjct: 56 RGARLRLALQDLGP-IFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEE 114
Query: 151 NLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFL 210
LG + ++F + +P+A+AS+AQVH A L+ +EV VKV P LE +R DIA + L
Sbjct: 115 QLGAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFIL 174
Query: 211 SKTVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFW 267
++ + E R +VS++ TI ELD ++EA N+ + NF+ + ++ VP V+W
Sbjct: 175 ARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYW 234
Query: 268 DFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGN 327
D+ VL M+ G V DL++L++ + + +A+ VE+F +F F H D H GN
Sbjct: 235 DWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGN 294
Query: 328 ILVSSEGRNGFSLVLLDHGICKTLDD 353
I VS+ + +D GI +L D
Sbjct: 295 IFVSTRAPWSPQYIAVDCGIVGSLTD 320
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 144/266 (54%), Gaps = 5/266 (1%)
Query: 92 RSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMS 150
R A+ L L ++ ++K GQ ++ R + P + ++ L LQD+ P + + +
Sbjct: 56 RGARLRLALQDLGP-IFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEE 114
Query: 151 NLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFL 210
LG + ++F + +P+A+AS+AQVH A L+ +EV VKV P LE +R DIA + L
Sbjct: 115 QLGAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFIL 174
Query: 211 SKTVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFW 267
++ + E R +VS++ TI ELD ++EA N+ + NF+ + ++ VP V+W
Sbjct: 175 ARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYW 234
Query: 268 DFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGN 327
D+ VL M+ G V DL++L++ + + +A+ VE+F +F F H D H GN
Sbjct: 235 DWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGN 294
Query: 328 ILVSSEGRNGFSLVLLDHGICKTLDD 353
I VS+ + +D GI +L D
Sbjct: 295 IFVSTRAPWSPQYIAVDCGIVGSLTD 320
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 144/266 (54%), Gaps = 5/266 (1%)
Query: 92 RSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMS 150
R A+ L L ++ ++K GQ ++ R + P + ++ L LQD+ P + + +
Sbjct: 56 RGARLRLALQDLGP-IFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEE 114
Query: 151 NLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFL 210
LG + ++F + +P+A+AS+AQVH A L+ +EV VKV P LE +R DIA + L
Sbjct: 115 QLGAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFIL 174
Query: 211 SKTVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFW 267
++ + E R +VS++ TI ELD ++EA N+ + NF+ + ++ VP V+W
Sbjct: 175 ARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYW 234
Query: 268 DFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGN 327
D+ VL M+ G V DL++L++ + + +A+ VE+F +F F H D H GN
Sbjct: 235 DWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGN 294
Query: 328 ILVSSEGRNGFSLVLLDHGICKTLDD 353
I VS+ + +D GI +L D
Sbjct: 295 IFVSTRAPWSPQYIAVDCGIVGSLTD 320
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 137/248 (55%), Gaps = 4/248 (1%)
Query: 108 YVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQ 166
++K GQ ++ R + P++ + L+ LQD+ P D + +++ LG + ++F DE
Sbjct: 70 FIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAIKLIEEQLGARICDVFSRFDET 129
Query: 167 PIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRF--- 223
P+A+AS+AQVH A L+ +EV VKV PGL+ + D+A + L++ + + R
Sbjct: 130 PLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWLFILARMAERVSADARLLHP 189
Query: 224 GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGC 283
+V ++ TI ELD ++EA NS + NF+ ++++ VP V+WD+ VL M+ G
Sbjct: 190 VQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGL 249
Query: 284 KVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFSLVLL 343
+V D+ L + + + +A+ VE+F IF F H D H GNI VS+ + +
Sbjct: 250 QVTDMAGLADQRTDMKMLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKYIAI 309
Query: 344 DHGICKTL 351
D GI +L
Sbjct: 310 DCGIVGSL 317
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 145/264 (54%), Gaps = 5/264 (1%)
Query: 92 RSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMS 150
R A+ L L ++ ++K GQ ++ R + P++ + L+ LQD+ P D + +++
Sbjct: 55 RGARLRLALQDLGP-IFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSMKLIEE 113
Query: 151 NLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFL 210
LG+ +SE+F D P+A+AS+AQVH A L+ +EV VKV PGL+ + D+A + L
Sbjct: 114 QLGKKISEVFSRFDVDPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIGQDLAWLFIL 173
Query: 211 SKTVTWIFPEYRFGW---LVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFW 267
++ + R +V+++ TI ELD ++EA N+ + NF+ + ++ VP V+W
Sbjct: 174 ARAAERFSADARLLHPVDVVADYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYW 233
Query: 268 DFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGN 327
D+ VL M+ G +V DL +L + + + +A+ VE+F +F F H D H GN
Sbjct: 234 DWCRPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGN 293
Query: 328 ILVSSEGRNGFSLVLLDHGICKTL 351
I VS+ + +D GI +L
Sbjct: 294 IFVSTVNPWSPQYIAIDCGIVGSL 317
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 149/289 (51%), Gaps = 20/289 (6%)
Query: 94 AKRILKLCEMNKGFYVKAGQFVAAIRQ-VPKEYSSTLLSLQDQAVPCDFKSIKEVLMSNL 152
+R+ + E +VK GQ ++ +P + + L LQD+ P D + + +
Sbjct: 50 GQRLREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERAF 109
Query: 153 GQHLSEIFISLDEQPIAAASIAQVHHAILRG----NQEVAVKVQYPGLEHKMRLDIAIMS 208
+ L +IF+S + +P+A+ASIAQVH A++ ++VAVKV PG++ + D+A+M
Sbjct: 110 RKKLDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLALMH 169
Query: 209 FLSKTVTWIFPE---YRFGWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHV 265
+++ V + + + +V+EF + ELD I+EA N+ + N + ++V +P V
Sbjct: 170 MMARWVERLSADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLVLIPEV 229
Query: 266 FWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHA 325
+WDF S V+ MQ G + ++ L+E + K+A+ V +F +F GF H D H
Sbjct: 230 YWDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFHADMHP 289
Query: 326 GNILVSSEGRNGFSLVLLDHGICKTLDDT------------FRVDYCRL 362
GNI+VS E + LD GI TL + FR DY R+
Sbjct: 290 GNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRV 338
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 142 bits (358), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 136/248 (54%), Gaps = 4/248 (1%)
Query: 108 YVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQ 166
++K GQ ++ R + P++ + L+ LQD+ P D + ++ LG + ++F DE
Sbjct: 70 FIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAINLIEEQLGARICDVFSRFDET 129
Query: 167 PIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRF--- 223
P+A+AS+AQVH A L+ +EV VKV PGL+ + D+A + L++ + + R
Sbjct: 130 PLASASVAQVHAACLKTGEEVVVKVVRPGLKPVIGQDLAWLFILARMAERVSADARLLHP 189
Query: 224 GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGC 283
+V ++ TI ELD ++EA NS + NF+ ++++ VP V+WD+ VL M+ G
Sbjct: 190 VQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGL 249
Query: 284 KVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFSLVLL 343
+V D+ L + + + +A+ VE+F IF F H D H GNI VS+ + +
Sbjct: 250 QVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWSPKYIAI 309
Query: 344 DHGICKTL 351
D GI +L
Sbjct: 310 DCGIVGSL 317
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 138/248 (55%), Gaps = 4/248 (1%)
Query: 108 YVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQ 166
++K GQ ++ R + P++ + L+ LQD+ P D + +++ LG + ++F DE+
Sbjct: 70 FIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQLAIKLIEEQLGARICDVFSRFDEK 129
Query: 167 PIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRF--- 223
P+A+AS+AQVH A L+ +EV VKV PGL+ + D+A + L++ + + R
Sbjct: 130 PLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWLFILARMAERVSADARLLHP 189
Query: 224 GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGC 283
+V ++ TI ELD ++EA N+ + NF+ ++++ VP V+WD+ VL M+ G
Sbjct: 190 VQVVMDYEKTIYDELDLLREAANASQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGL 249
Query: 284 KVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFSLVLL 343
+V D+ L + + + +A+ VE+F IF F H D H GNI VS+ + +
Sbjct: 250 QVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKYIAI 309
Query: 344 DHGICKTL 351
D GI +L
Sbjct: 310 DCGIVGSL 317
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 147/264 (55%), Gaps = 5/264 (1%)
Query: 92 RSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMS 150
R A+ L L ++ ++K GQ ++ R + P++ + L+ LQD+ P D + ++ +
Sbjct: 55 RGARLRLALQDLGP-IFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSVALIEA 113
Query: 151 NLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFL 210
LG+ +S++F D +P+A+AS+AQVH A L+ +EV VKV PGL+ + D+A + L
Sbjct: 114 QLGKKISDVFSRFDIEPLASASVAQVHAAKLKTGEEVVVKVIRPGLKPIIAQDLAWLFIL 173
Query: 211 SKTVTWIFPEYRFGW---LVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFW 267
++ + + R +VS++ TI ELD ++EA N+ + NF+ + ++ VP V+W
Sbjct: 174 ARAAEKLSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYW 233
Query: 268 DFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGN 327
D+ VL M+ G +V DL +L + + + +A+ VE+F +F F H D H GN
Sbjct: 234 DWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGN 293
Query: 328 ILVSSEGRNGFSLVLLDHGICKTL 351
I VS+ + +D GI +L
Sbjct: 294 IFVSTVQPWSPQYIAIDCGIVGSL 317
>sp|Q2SN14|UBIB_HAHCH Probable ubiquinone biosynthesis protein UbiB OS=Hahella chejuensis
(strain KCTC 2396) GN=ubiB PE=3 SV=1
Length = 546
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 138/262 (52%), Gaps = 4/262 (1%)
Query: 94 AKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNL 152
+R+ + E +VK GQ ++ + + P++ + L LQD+ P ++ +L
Sbjct: 52 GERLRRALEELGPIFVKFGQILSTRKDLLPEDLADELKRLQDKVPPFASDMAVRIIEESL 111
Query: 153 GQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSK 212
+SE+F P+A+ASIAQVH A L+ +EV VKV PG+E +RLDIA+M +++
Sbjct: 112 KSPVSELFADFQTYPMASASIAQVHAATLKNGKEVVVKVIRPGIEKTIRLDIALMLLVAR 171
Query: 213 TVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDF 269
V + + + +V ++ TI ELD +EA N+ + NF +E++ +P V+W+
Sbjct: 172 LVENYWEDGKRLHPVEVVKDYEHTIIDELDLQREAANTSQLKRNFAGSELIYIPEVYWEM 231
Query: 270 TTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNIL 329
T S VL M+ G + D++ L++ N +A+ VE+F +F F H D H GNI
Sbjct: 232 THSRVLVMERIYGVPIADVEQLRKANVNMKLLAERGVEIFFTQVFRDSFFHADMHPGNIF 291
Query: 330 VSSEGRNGFSLVLLDHGICKTL 351
V + +D GI TL
Sbjct: 292 VDVSNPANPRYIAIDCGIVGTL 313
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 141/271 (52%), Gaps = 16/271 (5%)
Query: 108 YVKAGQFVAAIRQ-VPKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQ 166
+VK GQ ++ R +P + ++ L LQD+ P + ++ +LG+ + E+F S D
Sbjct: 64 FVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQSLGRPIEEVFASFDAD 123
Query: 167 PIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPE---YRF 223
P+A+ASIAQVH +L +EVAVKV P + + + D+A++ + + + P+ R
Sbjct: 124 PVASASIAQVHFGVLHDGREVAVKVLRPNVLNIIEADLALLRVAAAWLERLSPDGRRLRP 183
Query: 224 GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGC 283
+V+EF + ELD +EA N+ + N +++ +P + WD +++ VL M+ G
Sbjct: 184 REVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIWDLSSAEVLVMERMHGV 243
Query: 284 KVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFSLVLL 343
+ +++L+ + K+A+ V +F +F GF H D H GNI+VS+ + L
Sbjct: 244 PISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIMVSTAPATFGRYIAL 303
Query: 344 DHGICKTLDDT------------FRVDYCRL 362
D GI TLD FR DY R+
Sbjct: 304 DFGIVGTLDSRDKEYLAQNFLAFFRRDYRRV 334
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 141/264 (53%), Gaps = 5/264 (1%)
Query: 92 RSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMS 150
R A+ L L ++ F +K GQ ++ R + P + + L+ LQD+ P D K ++
Sbjct: 56 RGARLRLALQDLGPIF-IKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAVALIEE 114
Query: 151 NLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFL 210
LG + E+F D +P+A+AS+AQVH A L+ +EV VKV PGL+ + D+A + +
Sbjct: 115 QLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLI 174
Query: 211 SKTVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFW 267
+K + R +V ++ TI ELD ++EA N+ + NF+++E++ VP V+W
Sbjct: 175 AKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEDSELMYVPQVYW 234
Query: 268 DFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGN 327
D VL M+ G V D+ +L + + + +A+ VEVF +F F H D H GN
Sbjct: 235 DLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGN 294
Query: 328 ILVSSEGRNGFSLVLLDHGICKTL 351
I VS+ + +D GI +L
Sbjct: 295 IFVSTVKPWSPQYIAIDCGIVGSL 318
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 139/268 (51%), Gaps = 16/268 (5%)
Query: 108 YVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEIFISLDEQ 166
+VK GQ ++ R + P + + +L LQD+ P + + ++ +LG +SE+F
Sbjct: 66 FVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAPVSELFAEFSPD 125
Query: 167 PIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIFPEYRF--- 223
P+A+AS+AQVH A L Q+V VKV PG+E +R D+ +M ++ + + E +
Sbjct: 126 PMASASVAQVHAATLPNGQKVVVKVLRPGIEKVIRQDLGLMYLMAGLLEKYWSEGKRLHP 185
Query: 224 GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVLTMQFCKGC 283
+V+++ TI ELD +EA N+ + NF+N+ ++ +P + WD+T VL M+ G
Sbjct: 186 VEVVADYDSTIHDELDLQREAANASQLRRNFENSPLIYIPFIDWDYTRKSVLVMERIHGI 245
Query: 284 KVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFSLVLL 343
+ D+ +L++ N +A+ VE+F +F F H D H GNI V + +
Sbjct: 246 PIADVPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHADMHPGNIFVDVSNPADPKYIAI 305
Query: 344 DHGICKTL--DDT----------FRVDY 359
D GI TL DD FR DY
Sbjct: 306 DFGIVGTLAPDDQSYLARNLLAFFRRDY 333
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 140/264 (53%), Gaps = 5/264 (1%)
Query: 92 RSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMS 150
R A+ L L ++ ++K GQ ++ R + P + + L+ LQD+ P D + ++
Sbjct: 56 RGARLRLALQDLGP-IFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEE 114
Query: 151 NLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFL 210
LG + E+F D +P+A+AS+AQVH A L+ +EV VKV PGL+ + D+A + +
Sbjct: 115 QLGAKVGEVFSRFDVEPLASASVAQVHAARLKSGEEVVVKVVRPGLKPVIAQDLAWLFLI 174
Query: 211 SKTVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFW 267
+K + R +V ++ TI ELD ++EA N+ + NF+ +E++ VP V+W
Sbjct: 175 AKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYW 234
Query: 268 DFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGN 327
D VL M+ G V D+ +L + + + +A+ VEVF +F F H D H GN
Sbjct: 235 DLCRPKVLVMERIYGVPVTDMATLADQRTDMKMLAERGVEVFFTQVFRDSFFHADMHPGN 294
Query: 328 ILVSSEGRNGFSLVLLDHGICKTL 351
I VS+ + +D GI +L
Sbjct: 295 IFVSTVKPWSPQYIAIDCGIVGSL 318
>sp|Q491V8|UBIB_BLOPB Probable ubiquinone biosynthesis protein UbiB OS=Blochmannia
pennsylvanicus (strain BPEN) GN=ubiB PE=3 SV=1
Length = 546
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 168/317 (52%), Gaps = 14/317 (4%)
Query: 48 IDGIVRSSRAISTI-TFTIADYKYS---LYSLSVGSE---DYLCKLSEVHLRSAKRILKL 100
+D + R I TI + ++D+ + ++ L +GS L K S++ L R L L
Sbjct: 3 VDELCRLYSIIKTILNYGLSDFVPTHRLIFPLRIGSRFLLRVLNKHSQLTLGERFR-LAL 61
Query: 101 CEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQHLSEI 159
E+ ++K GQ ++ R + P + L LQD+ P D K + +G L
Sbjct: 62 QELGP-IWIKFGQMLSTRRDIFPDSVADQLSILQDRVAPFDGIIAKMCIERAIGNSLETW 120
Query: 160 FISLDEQPIAAASIAQVHHAILR-GNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVTWIF 218
F E P+A+ASI+QVH A L+ N+++ +K+ PGL +++DI +M L+K +
Sbjct: 121 FKDFQEIPLASASISQVHSARLKKNNKDIVIKIIRPGLLPVIKIDICLMYRLAKWICKFL 180
Query: 219 PE---YRFGWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTSHVL 275
PE ++F +VSE+ T+ EL+ ++E N+ + NFK ++++ +P V+ DF + +V+
Sbjct: 181 PEGRKFKFSEVVSEYEKTLFNELNLLKETANTIQLRRNFKKSQILYIPKVYVDFCSENVM 240
Query: 276 TMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSSEGR 335
M+ G V +L +LK+ K N +A+ +E+F +F F HGD H GNI +S +
Sbjct: 241 VMERIYGIPVYNLVALKKQKTNMKLLAERGIEIFFTQVFRDSFFHGDMHPGNIFISYKHP 300
Query: 336 NGFSLVLLDHGICKTLD 352
+ +D GI +L+
Sbjct: 301 GNPKYISVDCGIVGSLN 317
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 140/264 (53%), Gaps = 5/264 (1%)
Query: 92 RSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMS 150
R A+ L L ++ ++K GQ ++ R + P + + L+ LQD+ P D + ++
Sbjct: 56 RGARLRLALQDLGP-IFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQKAVALIEE 114
Query: 151 NLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFL 210
LG + E+F D +P+A+AS+AQVH A L+ +EV VKV PGL+ + D+A + +
Sbjct: 115 QLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLI 174
Query: 211 SKTVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFW 267
+K + R +V ++ TI ELD ++EA N+ + NF+ +E++ VP V+W
Sbjct: 175 AKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYW 234
Query: 268 DFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGN 327
D VL M+ G V D+ +L + + + +A+ VEVF +F F H D H GN
Sbjct: 235 DLCRPKVLVMERIYGVPVTDMVTLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGN 294
Query: 328 ILVSSEGRNGFSLVLLDHGICKTL 351
I VS+ + +D GI +L
Sbjct: 295 IFVSTVKPWSPQYIAIDCGIVGSL 318
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 137/259 (52%), Gaps = 5/259 (1%)
Query: 98 LKLCEMNKG-FYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNLGQH 155
L+L + G ++K GQ ++ R + P++ + L LQD+ P + + ++ LG
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQLGAR 119
Query: 156 LSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMRLDIAIMSFLSKTVT 215
+ E F D +P+A+AS+AQVH A L+ +EV VKV PGL+ +R D+A + ++
Sbjct: 120 VDEAFARFDSEPLASASVAQVHAAQLKTGEEVVVKVVRPGLKAVIRQDLAWLYLFARLAE 179
Query: 216 WIFPEYRFGWLV---SEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHVFWDFTTS 272
E R LV S++ TI ELD ++EA N+ + NF+ + ++ VP ++WD+
Sbjct: 180 RASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYWDWCRP 239
Query: 273 HVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHAGNILVSS 332
VL M+ G V DL +L + + +A+ VE+F +F F H D H GNI VS+
Sbjct: 240 KVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVST 299
Query: 333 EGRNGFSLVLLDHGICKTL 351
+ +D GI +L
Sbjct: 300 RQPWDPQYIAIDCGIVGSL 318
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 142/289 (49%), Gaps = 20/289 (6%)
Query: 94 AKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNL 152
+R+ + E +VK GQ ++ R + P + + L LQD+ P +
Sbjct: 50 GQRLREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAF 109
Query: 153 GQHLSEIFISLDEQPIAAASIAQVHHAILRGNQ----EVAVKVQYPGLEHKMRLDIAIMS 208
+ + ++F+ DE PIA+ASIAQVH A +R ++ EVAVKV P + + D+A+M+
Sbjct: 110 RRPVGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALMA 169
Query: 209 FLSKTVTWIFPE---YRFGWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHV 265
++ V + P+ + +V EF + ELD ++EA N+ + N + E+V +P +
Sbjct: 170 MMAGWVEKLSPDGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELVLIPEM 229
Query: 266 FWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHA 325
FWDF V+ M+ G + LD L+ + K+A+ V +F +F GF H D H
Sbjct: 230 FWDFCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFHADMHP 289
Query: 326 GNILVSSEGRNGFSLVLLDHGICKTLDDT------------FRVDYCRL 362
GNI VS + LD GI TL ++ FR DY R+
Sbjct: 290 GNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRV 338
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 148/313 (47%), Gaps = 27/313 (8%)
Query: 83 LCKLSEVHLRSAKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDF 141
L K+ E + + + + K+ FY+K GQ ++ + P Y + L +LQ P +
Sbjct: 32 LGKVGEPQIPTPEVLTKILVELGPFYIKLGQLLSTRPDLLPPRYINALTALQSNVPPLPW 91
Query: 142 KSIKEVLMSNLGQHLSEIFISLDEQPIAAASIAQVHHAILRGNQEVAVKVQYPGLEHKMR 201
+I+++L Q L E F ++ +PIAA SI Q+H A+L+ + VA+KV+ PG++ +
Sbjct: 92 SAIEDLLQREFPQPLGETFQEIESEPIAAGSIGQIHRAVLQSGETVAIKVKRPGIDVIVE 151
Query: 202 LDIAIMSFLSKTVTWIFPEYRFGW------LVSEFAGTISLELDFIQEAKNSEKTAEN-- 253
D S L K V + FG L EF T+ EL+F EA + N
Sbjct: 152 QD----SLLIKDVAELLALTEFGQNYDIVKLADEFTQTVKAELNFDTEAAYTNNLRTNLA 207
Query: 254 ----FKNNEMVQVPHVFWDFTTSHVLTMQFCKGCKVDDLD-----SLKEIKANPIKVAKA 304
F N++V +P V+W+ T L +++ G + D S K+I ++
Sbjct: 208 KTTWFDPNQLV-IPKVYWELTNQKFLVLEWLDGVPILTADLTQPPSDKDIAEKKKEITTL 266
Query: 305 LVEVFAEMIFVHGFVHGDPHAGNILVSSEGRNGFSLVLLDHGICKTLDDTFRVDYCRLWK 364
L F + ++V GF H DPH GNI ++GR L L+D G+ LD R +
Sbjct: 267 LFRAFFQQLYVDGFFHADPHPGNIFYLADGR----LALIDCGMVGRLDPRTRQLLTEMLL 322
Query: 365 ALILLDSDEIKHL 377
A++ LD+ L
Sbjct: 323 AIVDLDAKRCAQL 335
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 140/268 (52%), Gaps = 8/268 (2%)
Query: 94 AKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNL 152
A R+ + E +VK GQ ++ R + P ++++ L LQDQ P D ++ +L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 153 GQHLSEIFISLDEQPIAAASIAQVHHAILRGNQE----VAVKVQYPGLEHKMRLDIAIMS 208
G + +F + P+A+ASIAQVH A L+ + VAVKV P + + D+A+M
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 209 FLSKTVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHV 265
++ ++ + R +V+EF + ELD ++EA N + NF +++ VP +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 266 FWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHA 325
FWD++T VL M+ G + +D+L+ + K+A+ VE+F +F GF H D H
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 326 GNILVSSEGRNGFSLVLLDHGICKTLDD 353
GNI VS + ++ + LD GI L D
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSD 316
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 140/268 (52%), Gaps = 8/268 (2%)
Query: 94 AKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNL 152
A R+ + E +VK GQ ++ R + P ++++ L LQDQ P D ++ +L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 153 GQHLSEIFISLDEQPIAAASIAQVHHAILRGNQE----VAVKVQYPGLEHKMRLDIAIMS 208
G + +F + P+A+ASIAQVH A L+ + VAVKV P + + D+A+M
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 209 FLSKTVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHV 265
++ ++ + R +V+EF + ELD ++EA N + NF +++ VP +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 266 FWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHA 325
FWD++T VL M+ G + +D+L+ + K+A+ VE+F +F GF H D H
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 326 GNILVSSEGRNGFSLVLLDHGICKTLDD 353
GNI VS + ++ + LD GI L D
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSD 316
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 140/268 (52%), Gaps = 8/268 (2%)
Query: 94 AKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNL 152
A R+ + E +VK GQ ++ R + P ++++ L LQDQ P D ++ +L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 153 GQHLSEIFISLDEQPIAAASIAQVHHAILRGNQE----VAVKVQYPGLEHKMRLDIAIMS 208
G + +F + P+A+ASIAQVH A L+ + VAVKV P + + D+A+M
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 209 FLSKTVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHV 265
++ ++ + R +V+EF + ELD ++EA N + NF +++ VP +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 266 FWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHA 325
FWD++T VL M+ G + +D+L+ + K+A+ VE+F +F GF H D H
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 326 GNILVSSEGRNGFSLVLLDHGICKTLDD 353
GNI VS + ++ + LD GI L D
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSD 316
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 140/268 (52%), Gaps = 8/268 (2%)
Query: 94 AKRILKLCEMNKGFYVKAGQFVAAIRQV-PKEYSSTLLSLQDQAVPCDFKSIKEVLMSNL 152
A R+ + E +VK GQ ++ R + P ++++ L LQDQ P D ++ +L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 153 GQHLSEIFISLDEQPIAAASIAQVHHAILRGNQE----VAVKVQYPGLEHKMRLDIAIMS 208
G + +F + P+A+ASIAQVH A L+ + VAVKV P + + D+A+M
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 209 FLSKTVTWIFPEYRF---GWLVSEFAGTISLELDFIQEAKNSEKTAENFKNNEMVQVPHV 265
++ ++ + R +V+EF + ELD ++EA N + NF +++ VP +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 266 FWDFTTSHVLTMQFCKGCKVDDLDSLKEIKANPIKVAKALVEVFAEMIFVHGFVHGDPHA 325
FWD++T VL M+ G + +D+L+ + K+A+ VE+F +F GF H D H
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 326 GNILVSSEGRNGFSLVLLDHGICKTLDD 353
GNI VS + ++ + LD GI L D
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSD 316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,301,344
Number of Sequences: 539616
Number of extensions: 7412021
Number of successful extensions: 18793
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 18283
Number of HSP's gapped (non-prelim): 253
length of query: 547
length of database: 191,569,459
effective HSP length: 123
effective length of query: 424
effective length of database: 125,196,691
effective search space: 53083396984
effective search space used: 53083396984
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)