Your job contains 1 sequence.
>008981
MAMTADSTSNHVTPRGSGFSGDGLSSPQLRRKNSPSQWSEVVRGEHDPASTTVNHSQSSP
SPPLTTTSLPEPTGSVSPSKAVASAPSSPPPDNPIAAGSSDADKGNAARPKKLAWNKPSN
GVVEVGPVMGAASWPALSESTKPSPKSSSADSSSSKPVADGSVSGTQVPLIPHLPQKVSN
ANANPNSNANRTMPARQRLKRSGGGVSNAGSGPAQTRPTQPPPPPPPPPFPVFPMPPNSF
ANLVTAMPDPSPREPLYRGSNWDARPVGGFVSQSHPMNDQRNSSRRGNYGQRGDGNYNNN
FGGRHDQDRGNYSNARDAHVQPQRGPPRGFVRPAPPNAAAFAPPQPMRPFPNPMGFPEFI
YIPPMPVEAAALRGVTGMPPFIPPAPVLMPVPEPSLAAMLIHQIDYYFSDANLVKDEFLK
SNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTVVEVQDDRVRRRNEWMKWIATP
GRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEA
TEEPNQN
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008981
(547 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2156912 - symbol:LARP1b "AT5G66100" species:37... 189 4.6e-23 3
TAIR|locus:2125334 - symbol:LARP1c "La related protein 1c... 172 1.6e-21 2
UNIPROTKB|E7ERC4 - symbol:SSB "Lupus La protein" species:... 149 7.4e-10 1
UNIPROTKB|E9PFL9 - symbol:SSB "Lupus La protein" species:... 149 7.4e-10 1
UNIPROTKB|G3V0E9 - symbol:LARP1B "La-related protein 1B" ... 168 8.2e-10 1
POMBASE|SPAC1527.03 - symbol:SPAC1527.03 "RNA-binding pro... 154 1.5e-09 2
UNIPROTKB|G3XAJ5 - symbol:LARP1B "La-related protein 1B" ... 168 1.9e-09 1
UNIPROTKB|Q659C4 - symbol:LARP1B "La-related protein 1B" ... 168 4.3e-09 1
WB|WBGene00020097 - symbol:larp-1 species:6239 "Caenorhab... 166 1.5e-08 2
UNIPROTKB|F1P339 - symbol:LARP1 "Uncharacterized protein"... 157 7.1e-08 1
UNIPROTKB|F1S1V1 - symbol:SSB "Uncharacterized protein" s... 150 1.1e-07 1
UNIPROTKB|E9PFH8 - symbol:SSB "Lupus La protein" species:... 149 1.2e-07 1
UNIPROTKB|Q5ZKS1 - symbol:SSB "Uncharacterized protein" s... 128 1.4e-07 1
UNIPROTKB|P10881 - symbol:SSB "Lupus La protein homolog" ... 149 1.5e-07 1
UNIPROTKB|E2RH09 - symbol:SSB "Uncharacterized protein" s... 149 1.5e-07 1
UNIPROTKB|P05455 - symbol:SSB "Lupus La protein" species:... 149 1.5e-07 1
RGD|1306683 - symbol:Larp1 "La ribonucleoprotein domain f... 150 4.7e-07 1
UNIPROTKB|F1MAB1 - symbol:Ssb "Lupus La protein homolog" ... 144 4.8e-07 1
UNIPROTKB|D6RAF3 - symbol:LARP7 "La-related protein 7" sp... 123 5.0e-07 1
UNIPROTKB|D6RF49 - symbol:LARP7 "La-related protein 7" sp... 123 5.0e-07 1
MGI|MGI:1890165 - symbol:Larp1 "La ribonucleoprotein doma... 150 5.0e-07 1
MGI|MGI:98423 - symbol:Ssb "Sjogren syndrome antigen B" s... 144 5.7e-07 1
RGD|620804 - symbol:Ssb "Sjogren syndrome antigen B" spec... 144 5.7e-07 1
UNIPROTKB|Q66HM7 - symbol:Ssb "Sjogren syndrome antigen B... 144 5.7e-07 1
UNIPROTKB|F1MZU1 - symbol:LARP1 "Uncharacterized protein"... 147 9.2e-07 1
ZFIN|ZDB-GENE-030131-223 - symbol:ssb "Sjogren syndrome a... 138 2.5e-06 1
UNIPROTKB|Q6PKG0 - symbol:LARP1 "La-related protein 1" sp... 150 3.9e-06 2
UNIPROTKB|F1P301 - symbol:SSB "Uncharacterized protein" s... 128 4.4e-06 1
RGD|1592944 - symbol:LOC680385 "similar to Sjogren syndro... 135 5.4e-06 1
DICTYBASE|DDB_G0281763 - symbol:DDB_G0281763 "Lupus La pr... 133 7.0e-06 1
ASPGD|ASPL0000062948 - symbol:AN1288 species:162425 "Emer... 138 1.5e-05 2
FB|FBgn0011638 - symbol:La "La autoantigen-like" species:... 130 1.8e-05 1
FB|FBgn0261618 - symbol:larp "La related protein" species... 143 2.3e-05 2
UNIPROTKB|F1NYE7 - symbol:SSB "Uncharacterized protein" s... 128 3.3e-05 1
TAIR|locus:2170478 - symbol:LARP6a "La related protein 6a... 129 4.7e-05 2
FB|FBgn0035424 - symbol:CG11505 species:7227 "Drosophila ... 133 5.5e-05 1
UNIPROTKB|D6RFF0 - symbol:LARP7 "La-related protein 7" sp... 123 6.5e-05 1
WB|WBGene00016653 - symbol:C44E4.4 species:6239 "Caenorha... 125 6.8e-05 1
ZFIN|ZDB-GENE-030131-6896 - symbol:larp7 "La ribonucleopr... 126 9.0e-05 1
UNIPROTKB|F1MR14 - symbol:F1MR14 "Uncharacterized protein... 124 0.00016 1
UNIPROTKB|E1BVY8 - symbol:LOC420093 "Uncharacterized prot... 112 0.00016 1
POMBASE|SPAC57A10.10c - symbol:sla1 "La protein homolog" ... 119 0.00018 1
UNIPROTKB|Q4G0J3 - symbol:LARP7 "La-related protein 7" sp... 123 0.00021 1
SGD|S000002923 - symbol:SLF1 "RNA binding protein that as... 109 0.00021 2
MGI|MGI:107634 - symbol:Larp7 "La ribonucleoprotein domai... 122 0.00026 1
RGD|1592474 - symbol:Larp7 "La ribonucleoprotein domain f... 121 0.00033 1
UNIPROTKB|Q5XI01 - symbol:Larp7 "La-related protein 7" sp... 121 0.00033 1
UNIPROTKB|I3LNK9 - symbol:I3LNK9 "Uncharacterized protein... 121 0.00034 1
UNIPROTKB|E2QW27 - symbol:LARP7 "Uncharacterized protein"... 121 0.00034 1
UNIPROTKB|F1S150 - symbol:LARP7 "Uncharacterized protein"... 121 0.00034 1
UNIPROTKB|F1NJ86 - symbol:LARP7 "Uncharacterized protein"... 114 0.00036 1
SGD|S000000542 - symbol:SRO9 "Cytoplasmic RNA-binding pro... 119 0.00036 1
UNIPROTKB|H9KZD5 - symbol:LARP4 "Uncharacterized protein"... 121 0.00048 1
FB|FBgn0260771 - symbol:Larp7 "La related protein 7" spec... 119 0.00058 1
MGI|MGI:2443114 - symbol:Larp4 "La ribonucleoprotein doma... 120 0.00058 1
SGD|S000002209 - symbol:LHP1 "RNA binding protein require... 112 0.00095 1
>TAIR|locus:2156912 [details] [associations]
symbol:LARP1b "AT5G66100" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0010150 "leaf senescence"
evidence=IMP] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:AY091765 EMBL:AY149955 IPI:IPI00523817
RefSeq:NP_201411.2 UniGene:At.9216 ProteinModelPortal:Q8RWR2
SMR:Q8RWR2 PaxDb:Q8RWR2 PRIDE:Q8RWR2 EnsemblPlants:AT5G66100.1
GeneID:836742 KEGG:ath:AT5G66100 TAIR:At5g66100
HOGENOM:HOG000149120 InParanoid:Q8RWR2 OMA:DQMNDEG PhylomeDB:Q8RWR2
ProtClustDB:CLSN2915016 Genevestigator:Q8RWR2 Uniprot:Q8RWR2
Length = 453
Score = 189 (71.6 bits), Expect = 4.6e-23, Sum P(3) = 4.6e-23
Identities = 39/112 (34%), Positives = 70/112 (62%)
Query: 400 LIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTX 459
++ Q++YYFS NL +DE L+ M+D+GWVP+ +IA+F R+ LT+NIQ IL++LR+S
Sbjct: 339 ILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEV 398
Query: 460 XXXXXXXXXXXNEWMKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKE 511
+W K++ P R + SG ++ A ++ +++ +++T+ E
Sbjct: 399 VEIQGETLRRRGDWDKYLL-P-REPSRSGPAAGASNNASLVS-QIESMTLSE 447
Score = 99 (39.9 bits), Expect = 4.6e-23, Sum P(3) = 4.6e-23
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 98 GSSDADKGNAARPKKLAWNKPS-NGVVEVGPVMGAA-SWPAL 137
G++ +D NA + WN PS N +VGPVMGAA SWPAL
Sbjct: 63 GNNSSDYDNADKKPPPVWNMPSSNSSSDVGPVMGAAESWPAL 104
Score = 85 (35.0 bits), Expect = 4.6e-23, Sum P(3) = 4.6e-23
Identities = 30/80 (37%), Positives = 37/80 (46%)
Query: 258 RGSNWDARPVGGFVSQSHPMNDQRNSSRRGNYGQRGDG-NYNNNFGGRHDQDRG----NY 312
R N R G F S + N QRN R + RG+G ++ N H G NY
Sbjct: 193 RDQNHSQRGGGSFGSGNF-RNSQRN--RNSSSYPRGEGLHHGNRRNYEHGNQSGFSHRNY 249
Query: 313 SNARDAHVQPQRGPPRGFVR 332
S RD H+QPQRG G +R
Sbjct: 250 SG-RDMHLQPQRGV--GMIR 266
Score = 81 (33.6 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 251 SPREPLYRGSNWDARPVGGFVSQSHPMNDQ-RNSSRRGNYGQRGDGNYNNNFGGRHDQDR 309
S R+P R +N + VS + P+N + +N S+RG G G GN+ N+ + +++
Sbjct: 164 SQRKPFRRNNNTSSSSTSSNVSNAAPLNTRDQNHSQRGG-GSFGSGNFRNS---QRNRNS 219
Query: 310 GNYSNARDAHVQPQRGPPRG 329
+Y H +R G
Sbjct: 220 SSYPRGEGLHHGNRRNYEHG 239
Score = 40 (19.1 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 10 NHVTPRGSGFSGDGLSSPQLRRKNSPS 36
NH + RG G G G R +NS S
Sbjct: 196 NH-SQRGGGSFGSGNFRNSQRNRNSSS 221
>TAIR|locus:2125334 [details] [associations]
symbol:LARP1c "La related protein 1c" species:3702
"Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM]
[GO:0048523 "negative regulation of cellular process" evidence=RCA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010150 "leaf senescence"
evidence=IMP] GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AF370207 EMBL:AY133869 IPI:IPI00542126 RefSeq:NP_567991.1
UniGene:At.23352 UniGene:At.70045 ProteinModelPortal:Q94K80
SMR:Q94K80 PRIDE:Q94K80 EnsemblPlants:AT4G35890.1 GeneID:829743
KEGG:ath:AT4G35890 TAIR:At4g35890 HOGENOM:HOG000151189
InParanoid:Q94K80 OMA:MSPRRIS PhylomeDB:Q94K80
ProtClustDB:CLSN2917672 Genevestigator:Q94K80 Uniprot:Q94K80
Length = 523
Score = 172 (65.6 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 39/118 (33%), Positives = 63/118 (53%)
Query: 399 MLIH-QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTS 457
M +H QI YYFSD NL+ D +L+ M+++G+VP+ ++A F +V LT NIQ I+++L+ S
Sbjct: 371 MKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNS 430
Query: 458 TXXXXXXXXXXXXNEWMKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVN 515
+ W W+ R T SG S D +A N++V + + +
Sbjct: 431 PHVEVQGDFIRKRDNWQNWVLR--RNPTGSGPQSV--DRADAVAKRLGNLSVDQSSAD 484
Score = 154 (59.3 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 73/309 (23%), Positives = 105/309 (33%)
Query: 2 AMTADSTSNHVTPRG-SGFSGDGLSS----PQLRRKNSPSQWSEVVRGEHDPASTTVNHS 56
A + + S+ ++PR SG G +S P+ + S W+++VRGE +P + +
Sbjct: 4 ATSNNPASSSMSPRRISGNHGSPTASVAQSPRRPSRQVSSPWTQIVRGESEPIAAAAAVA 63
Query: 57 QXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXGSSDADKGNAARPKKLAWN 116
G D NA KK W
Sbjct: 64 GPSSPQSRAPIEPIASVSVAAPTAAVLTVEAAAGDEKSEASGGQD----NAG--KKPVWK 117
Query: 117 KPSNGVVEVGPVMGAASWPALXXXXXX-XXXXXXXXXXXXXXVADGSVSGTQVPLIPHLP 175
+PSNG EVGPVMGA+SWPAL V S + + VP+ +
Sbjct: 118 RPSNGASEVGPVMGASSWPALSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPVTQGIA 177
Query: 176 QKVXXXXXXXXXXXXRTMP--ARQRLKRSGGGVSNAGSGPAQTRPTQXXXXXXXXXXXX- 232
P +RQR + G S + +G Q
Sbjct: 178 NASVPAPKQAGRANPNPTPNHSRQRSFKQRNGASGSANGTVSQPSAQGSFTELPSHNPSP 237
Query: 233 -XXXXXNSFANLVTA-MPDPSPREPLYRGSNWDARPV-GGFVSQSHPMND---QRN-SSR 285
N FA+ +PS R+ YR N + GG +Q H + QR+ + R
Sbjct: 238 RGQNQKNGFASQNHGGTENPSQRDS-YRNQNGNHHQSHGGRRNQEHGNQNWTFQRSFNGR 296
Query: 286 RGN-YGQRG 293
GN QRG
Sbjct: 297 EGNAQSQRG 305
Score = 112 (44.5 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 34/95 (35%), Positives = 49/95 (51%)
Query: 245 TAMPDPSPREPLYRGSNWDARPVGGFVSQSHPMNDQRNSSRRGNYGQRGDGNYNNNFGGR 304
T +P +P P RG N GF SQ+H N S+R +Y + +GN++ + GGR
Sbjct: 228 TELPSHNP-SP--RGQNQK----NGFASQNH--GGTENPSQRDSYRNQ-NGNHHQSHGGR 277
Query: 305 HDQDRGNYS-------NARDAHVQPQRGPPRGFVR 332
+Q+ GN + N R+ + Q QRG P FVR
Sbjct: 278 RNQEHGNQNWTFQRSFNGREGNAQSQRGTP-AFVR 311
Score = 39 (18.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 264 ARPVGGFVSQSHPM----NDQRNSS 284
A P+GG SQ P +DQ+ SS
Sbjct: 483 ADPIGGSSSQLQPTEALSDDQQQSS 507
>UNIPROTKB|E7ERC4 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916922
ProteinModelPortal:E7ERC4 SMR:E7ERC4 PRIDE:E7ERC4
Ensembl:ENST00000422006 ArrayExpress:E7ERC4 Bgee:E7ERC4
Uniprot:E7ERC4
Length = 184
Score = 149 (57.5 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 27/64 (42%), Positives = 44/64 (68%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R+ LT++ +I+++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>UNIPROTKB|E9PFL9 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00917205
ProteinModelPortal:E9PFL9 SMR:E9PFL9 PRIDE:E9PFL9
Ensembl:ENST00000413002 ArrayExpress:E9PFL9 Bgee:E9PFL9
Uniprot:E9PFL9
Length = 134
Score = 149 (57.5 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 27/64 (42%), Positives = 44/64 (68%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R+ LT++ +I+++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>UNIPROTKB|G3V0E9 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CH471056
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC096898 EMBL:AC099340 EMBL:AC108045
EMBL:AC114735 EMBL:AC124030 RefSeq:NP_115615.2 UniGene:Hs.657067
GeneID:55132 KEGG:hsa:55132 CTD:55132 HGNC:HGNC:24704
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806
ProteinModelPortal:G3V0E9 SMR:G3V0E9 PRIDE:G3V0E9
Ensembl:ENST00000432347 ArrayExpress:G3V0E9 Bgee:G3V0E9
Uniprot:G3V0E9
Length = 358
Score = 168 (64.2 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTXXXX 462
QI+YYFS NL +D FL+ MD+QG++PI+LIA F RV+ LT+N+ LIL++L+ ST
Sbjct: 222 QIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEI 281
Query: 463 XXXXXXXXNEWMKWIATPG 481
E KW PG
Sbjct: 282 VDEKMRKKIEPEKW-PIPG 299
>POMBASE|SPAC1527.03 [details] [associations]
symbol:SPAC1527.03 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005844 "polysome" evidence=ISO] [GO:0006412
"translation" evidence=ISO] PomBase:SPAC1527.03 GO:GO:0005829
EMBL:CU329670 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0002181 GO:GO:0005844 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 HSSP:P05455
OrthoDB:EOG46MFST RefSeq:NP_594554.1 ProteinModelPortal:Q9P6K0
EnsemblFungi:SPAC1527.03.1 GeneID:2541645 KEGG:spo:SPAC1527.03
NextBio:20802738 Uniprot:Q9P6K0
Length = 475
Score = 154 (59.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTS 457
A L Q++YYFS NL KD FL+ +MDD+G+VP+ +ASF R+K+ ++++ L+ + + S
Sbjct: 327 AFLTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFNRIKSFSTDLNLLHAACKAS 386
Query: 458 TXXXXXXXXXXXXN-------EWMKWIA-TPGRISTESGLSSP--AGSSVDVLAPSFQNI 507
+ W WI + R+ E + SS+ LA S N+
Sbjct: 387 DIIDVAIDLQSPMSIKVRRKETWSPWILPSESRLKFEMAKYPQINSSSSMSPLASSISNL 446
Query: 508 TV 509
T+
Sbjct: 447 TI 448
Score = 57 (25.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 261 NWDARPVGGFVSQSHPMND--QRNSS--RRGNYGQRGDGNYNNNFGGRHDQDR 309
N+ P+ S S ND +RN + RRGNY G N+ D R
Sbjct: 153 NFTHTPISNRKS-SRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASR 204
Score = 52 (23.4 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 23/68 (33%), Positives = 32/68 (47%)
Query: 247 MPDPSPREPLYRGSNWDARPVGGFVSQSHPMNDQRNSSRRGNYGQRGDGNYNNNFGGRHD 306
+ D S ++PL +N + V + +H R SSR N G R +GN GR
Sbjct: 129 LSDDS-QKPLAPKANGKEKWVTITPNFTHTPISNRKSSRSRNDGSRRNGN------GRR- 180
Query: 307 QDRGNYSN 314
RGNYS+
Sbjct: 181 --RGNYSS 186
Score = 42 (19.8 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 249 DPSPREPLYRGSNWDARPVGGFVSQSHPMNDQRNS-SRRGNYGQRGDGNYNNNF 301
D S + P + S+ A G S+ +D + S +G ++G +NN F
Sbjct: 242 DSSSQAPHHSSSSGHAPSQQGGNKHSYKKSDSQQSFHHKGRNTRKGQ-RHNNGF 294
>UNIPROTKB|G3XAJ5 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CH471056
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC096898 EMBL:AC099340 EMBL:AC108045
EMBL:AC114735 EMBL:AC124030 RefSeq:NP_835144.1 UniGene:Hs.657067
GeneID:55132 KEGG:hsa:55132 CTD:55132 HGNC:HGNC:24704
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806
ProteinModelPortal:G3XAJ5 SMR:G3XAJ5 PRIDE:G3XAJ5
Ensembl:ENST00000427266 ArrayExpress:G3XAJ5 Bgee:G3XAJ5
Uniprot:G3XAJ5
Length = 522
Score = 168 (64.2 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTXXXX 462
QI+YYFS NL +D FL+ MD+QG++PI+LIA F RV+ LT+N+ LIL++L+ ST
Sbjct: 222 QIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEI 281
Query: 463 XXXXXXXXNEWMKWIATPG 481
E KW PG
Sbjct: 282 VDEKMRKKIEPEKW-PIPG 299
>UNIPROTKB|Q659C4 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 EMBL:AK001240
EMBL:AK027164 EMBL:AK092764 EMBL:AK098437 EMBL:AL137759
EMBL:AL832170 EMBL:BX537937 EMBL:AC096898 EMBL:AC099340
EMBL:AC108045 EMBL:AC114735 EMBL:AC124030 EMBL:BC030516
EMBL:BC050654 EMBL:BC062606 EMBL:BC110300 IPI:IPI00383949
IPI:IPI00855721 IPI:IPI00855786 IPI:IPI00855812 IPI:IPI00855930
IPI:IPI00855953 IPI:IPI00856120 IPI:IPI00940348 IPI:IPI00943149
RefSeq:NP_060548.2 RefSeq:NP_115615.2 RefSeq:NP_835144.1
UniGene:Hs.657067 HSSP:Q71RC2 ProteinModelPortal:Q659C4 SMR:Q659C4
DIP:DIP-47319N IntAct:Q659C4 PhosphoSite:Q659C4 DMDM:158564329
PaxDb:Q659C4 PRIDE:Q659C4 DNASU:55132 Ensembl:ENST00000264584
Ensembl:ENST00000326639 Ensembl:ENST00000354456
Ensembl:ENST00000394288 Ensembl:ENST00000441387 GeneID:55132
KEGG:hsa:55132 UCSC:uc003ifw.1 UCSC:uc003iga.3 UCSC:uc003igc.3
UCSC:uc003igf.3 CTD:55132 GeneCards:GC04P128983 HGNC:HGNC:24704
HPA:HPA036280 neXtProt:NX_Q659C4 PharmGKB:PA165664174
InParanoid:Q659C4 OMA:PPYVKKH OrthoDB:EOG4PZJ64 PhylomeDB:Q659C4
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806 ArrayExpress:Q659C4
Bgee:Q659C4 CleanEx:HS_LARP2 Genevestigator:Q659C4
InterPro:IPR006607 SMART:SM00684 Uniprot:Q659C4
Length = 914
Score = 168 (64.2 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTXXXX 462
QI+YYFS NL +D FL+ MD+QG++PI+LIA F RV+ LT+N+ LIL++L+ ST
Sbjct: 222 QIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEI 281
Query: 463 XXXXXXXXNEWMKWIATPG 481
E KW PG
Sbjct: 282 VDEKMRKKIEPEKW-PIPG 299
>WB|WBGene00020097 [details] [associations]
symbol:larp-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0034046 "poly(G) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0040010 GO:GO:0008266
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0040035 GO:GO:0000932 GO:GO:0034046
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 GeneTree:ENSGT00390000000523
EMBL:FO080694 ProteinModelPortal:D5MCN2 SMR:D5MCN2 PRIDE:D5MCN2
EnsemblMetazoa:R144.7b KEGG:cel:CELE_R144.7 CTD:175680
WormBase:R144.7b OMA:CAEMNTL ArrayExpress:D5MCN2 Uniprot:D5MCN2
Length = 1150
Score = 166 (63.5 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 31/56 (55%), Positives = 44/56 (78%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTST 458
QI+YYFS+ NL KD FL+ M +G++P+ LIASFPRV++LT + LIL++L+ ST
Sbjct: 586 QIEYYFSEENLQKDFFLRRKMGPEGYLPVALIASFPRVRSLTEDYSLILEALKDST 641
Score = 45 (20.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 15/56 (26%), Positives = 20/56 (35%)
Query: 274 SHPMNDQRNSSRRGNYGQRGDGNYNNNFGGRHDQDRGNYSNARDAHVQPQRGPPRG 329
SH NS + N GGR ++ RG R + + R PRG
Sbjct: 35 SHSSTQNENSQPEKQAHPPHNRREKENVGGRSERPRGEGKGKRRNNRKGDR-KPRG 89
Score = 44 (20.5 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 273 QSHPMNDQRNSSRRGNYGQR--GDGN---YNNNFGGRHDQDRGNYSNARDA 318
Q+HP +++R G +R G+G NN G R + RG + A
Sbjct: 49 QAHPPHNRREKENVGGRSERPRGEGKGKRRNNRKGDR--KPRGETKTEKPA 97
>UNIPROTKB|F1P339 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:AADN02028672 IPI:IPI00590067
Ensembl:ENSGALT00000006374 Uniprot:F1P339
Length = 927
Score = 157 (60.3 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 36/79 (45%), Positives = 48/79 (60%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTXXXX 462
QI+YYFS NL +D FL+ MD G++PITLIASF RV+ LT++I LI+ +L+ S
Sbjct: 249 QIEYYFSVDNLERDFFLRRKMDSDGFLPITLIASFHRVQALTTDISLIIKALKDSKVVEI 308
Query: 463 XXXXXXXXNEWMKWIATPG 481
+ KW A PG
Sbjct: 309 VDQKIRRKEQPEKW-ALPG 326
>UNIPROTKB|F1S1V1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS EMBL:CU466304
Ensembl:ENSSSCT00000017354 Uniprot:F1S1V1
Length = 402
Score = 150 (57.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/64 (42%), Positives = 44/64 (68%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R+ LT++ +I+++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIIEA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>UNIPROTKB|E9PFH8 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916802
ProteinModelPortal:E9PFH8 SMR:E9PFH8 PRIDE:E9PFH8
Ensembl:ENST00000409005 ArrayExpress:E9PFH8 Bgee:E9PFH8
Uniprot:E9PFH8
Length = 361
Score = 149 (57.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 27/64 (42%), Positives = 44/64 (68%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R+ LT++ +I+++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>UNIPROTKB|Q5ZKS1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 GeneTree:ENSGT00530000063464 HOGENOM:HOG000006947
OrthoDB:EOG4C2HB3 EMBL:AADN02020271 EMBL:AJ720013 IPI:IPI00599030
UniGene:Gga.42753 UniGene:Gga.53297 SMR:Q5ZKS1 STRING:Q5ZKS1
Ensembl:ENSGALT00000015751 HOVERGEN:HBG059895 InParanoid:Q5ZKS1
Uniprot:Q5ZKS1
Length = 137
Score = 128 (50.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDSL 454
L + + QI+YYF + NL +D+FLK + D GWVP+ ++ F R+ L+ + +I+++L
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSKDFGVIVEAL 72
Query: 455 RTS 457
R S
Sbjct: 73 RKS 75
>UNIPROTKB|P10881 [details] [associations]
symbol:SSB "Lupus La protein homolog" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:X13698 EMBL:BC103234 IPI:IPI00687044 PIR:S03849
RefSeq:NP_788838.1 UniGene:Bt.15513 ProteinModelPortal:P10881
SMR:P10881 STRING:P10881 PRIDE:P10881 Ensembl:ENSBTAT00000011484
GeneID:338071 KEGG:bta:338071 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS NextBio:20812521 Uniprot:P10881
Length = 404
Score = 149 (57.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/64 (42%), Positives = 44/64 (68%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R+ LT++ +I+++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>UNIPROTKB|E2RH09 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 OMA:ENAEMKS EMBL:AAEX03017743
RefSeq:XP_535952.2 ProteinModelPortal:E2RH09
Ensembl:ENSCAFT00000038572 GeneID:478787 KEGG:cfa:478787
Uniprot:E2RH09
Length = 406
Score = 149 (57.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/64 (42%), Positives = 44/64 (68%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R+ LT++ +I+++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>UNIPROTKB|P05455 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=TAS] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0006400 "tRNA modification"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471058 GO:GO:0030529 GO:GO:0006400 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 CTD:6741
HOGENOM:HOG000006947 HOVERGEN:HBG001407 OMA:ENAEMKS EMBL:X13697
EMBL:J04205 EMBL:BT009862 EMBL:AB451228 EMBL:AC009967 EMBL:BC001289
EMBL:BC020818 EMBL:M20328 IPI:IPI00009032 PIR:A31888
RefSeq:NP_003133.1 UniGene:Hs.632535 PDB:1OWX PDB:1S79 PDB:1S7A
PDB:1YTY PDB:1ZH5 PDB:2VOD PDB:2VON PDB:2VOO PDB:2VOP PDBsum:1OWX
PDBsum:1S79 PDBsum:1S7A PDBsum:1YTY PDBsum:1ZH5 PDBsum:2VOD
PDBsum:2VON PDBsum:2VOO PDBsum:2VOP DisProt:DP00229
ProteinModelPortal:P05455 SMR:P05455 DIP:DIP-29750N IntAct:P05455
MINT:MINT-5002383 STRING:P05455 PhosphoSite:P05455 DMDM:125985
PaxDb:P05455 PeptideAtlas:P05455 PRIDE:P05455 DNASU:6741
Ensembl:ENST00000260956 Ensembl:ENST00000409333 GeneID:6741
KEGG:hsa:6741 UCSC:uc002ufk.3 GeneCards:GC02P170619 HGNC:HGNC:11316
HPA:CAB004643 HPA:HPA012385 HPA:HPA017287 MIM:109090
neXtProt:NX_P05455 PharmGKB:PA36140 InParanoid:P05455
OrthoDB:EOG4C2HB3 PhylomeDB:P05455 EvolutionaryTrace:P05455
GenomeRNAi:6741 NextBio:26296 PMAP-CutDB:P05455 ArrayExpress:P05455
Bgee:P05455 CleanEx:HS_SSB Genevestigator:P05455
GermOnline:ENSG00000138385 GO:GO:0008334 Uniprot:P05455
Length = 408
Score = 149 (57.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/64 (42%), Positives = 44/64 (68%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R+ LT++ +I+++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>RGD|1306683 [details] [associations]
symbol:Larp1 "La ribonucleoprotein domain family, member 1"
species:10116 "Rattus norvegicus" [GO:0016239 "positive regulation
of macroautophagy" evidence=ISO] RGD:1306683 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR006607 SMART:SM00684
GeneTree:ENSGT00390000000523 IPI:IPI00369227 PRIDE:F1M062
Ensembl:ENSRNOT00000036959 Uniprot:F1M062
Length = 1024
Score = 150 (57.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 36/79 (45%), Positives = 46/79 (58%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTXXXX 462
QI+YYFS NL +D FL+ MD G++PITLIASF RV+ LT++I LI +L+ S
Sbjct: 337 QIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEM 396
Query: 463 XXXXXXXXNEWMKWIATPG 481
E KW PG
Sbjct: 397 VEEKVRRREEPEKW-PLPG 414
>UNIPROTKB|F1MAB1 [details] [associations]
symbol:Ssb "Lupus La protein homolog" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 RGD:620804
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 IPI:IPI00196913 PRIDE:F1MAB1
Ensembl:ENSRNOT00000010625 ArrayExpress:F1MAB1 Uniprot:F1MAB1
Length = 381
Score = 144 (55.7 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ + F R+ LT++ +I+ +
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>UNIPROTKB|D6RAF3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966387
ProteinModelPortal:D6RAF3 SMR:D6RAF3 Ensembl:ENST00000507443
HOGENOM:HOG000213946 ArrayExpress:D6RAF3 Bgee:D6RAF3 Uniprot:D6RAF3
Length = 129
Score = 123 (48.4 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 26/62 (41%), Positives = 43/62 (69%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLR 455
A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +LR
Sbjct: 36 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALR 95
Query: 456 TS 457
+S
Sbjct: 96 SS 97
>UNIPROTKB|D6RF49 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00967495
ProteinModelPortal:D6RF49 SMR:D6RF49 Ensembl:ENST00000508577
ArrayExpress:D6RF49 Bgee:D6RF49 Uniprot:D6RF49
Length = 119
Score = 123 (48.4 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 26/62 (41%), Positives = 43/62 (69%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLR 455
A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +LR
Sbjct: 36 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALR 95
Query: 456 TS 457
+S
Sbjct: 96 SS 97
>MGI|MGI:1890165 [details] [associations]
symbol:Larp1 "La ribonucleoprotein domain family, member 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISA] [GO:0016239 "positive regulation of
macroautophagy" evidence=ISO] MGI:MGI:1890165 GO:GO:0005737
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0016239
EMBL:AL672182 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 OrthoDB:EOG4PZJ64 InterPro:IPR006607
SMART:SM00684 HOGENOM:HOG000113283 HOVERGEN:HBG054322 OMA:GSEPATY
EMBL:BC053449 EMBL:AK129202 IPI:IPI00929761 IPI:IPI00929786
UniGene:Mm.248843 ProteinModelPortal:Q6ZQ58 SMR:Q6ZQ58
STRING:Q6ZQ58 PhosphoSite:Q6ZQ58 PaxDb:Q6ZQ58 PRIDE:Q6ZQ58
Ensembl:ENSMUST00000071487 UCSC:uc007jah.2
GeneTree:ENSGT00390000000523 InParanoid:Q6ZQ58 Bgee:Q6ZQ58
CleanEx:MM_LARP1 Genevestigator:Q6ZQ58
GermOnline:ENSMUSG00000037331 Uniprot:Q6ZQ58
Length = 1072
Score = 150 (57.9 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 36/79 (45%), Positives = 46/79 (58%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTXXXX 462
QI+YYFS NL +D FL+ MD G++PITLIASF RV+ LT++I LI +L+ S
Sbjct: 385 QIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEM 444
Query: 463 XXXXXXXXNEWMKWIATPG 481
E KW PG
Sbjct: 445 VEEKVRRREEPEKW-PLPG 462
>MGI|MGI:98423 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:98423 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:L00993
EMBL:BC003820 EMBL:Y07951 IPI:IPI00134300 RefSeq:NP_001103615.1
RefSeq:NP_033304.1 UniGene:Mm.10508 ProteinModelPortal:P32067
SMR:P32067 DIP:DIP-37706N IntAct:P32067 STRING:P32067
PhosphoSite:P32067 PaxDb:P32067 PRIDE:P32067
Ensembl:ENSMUST00000090852 Ensembl:ENSMUST00000166411 GeneID:20823
KEGG:mmu:20823 InParanoid:P32067 ChiTaRS:SSB NextBio:299565
Bgee:P32067 CleanEx:MM_SSB Genevestigator:P32067
GermOnline:ENSMUSG00000068882 Uniprot:P32067
Length = 415
Score = 144 (55.7 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ + F R+ LT++ +I+ +
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>RGD|620804 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 RGD:620804 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0030529 GO:GO:0008033
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OrthoDB:EOG4C2HB3 EMBL:X67859 IPI:IPI00212219
PIR:JC1494 UniGene:Rn.24494 ProteinModelPortal:P38656 SMR:P38656
DIP:DIP-46500N STRING:P38656 PhosphoSite:P38656 PRIDE:P38656
UCSC:RGD:620804 InParanoid:P38656 ArrayExpress:P38656
Genevestigator:P38656 GermOnline:ENSRNOG00000007998 Uniprot:P38656
Length = 415
Score = 144 (55.7 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ + F R+ LT++ +I+ +
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>UNIPROTKB|Q66HM7 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:620804 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 EMBL:CH473949 InterPro:IPR006630 PROSITE:PS50961
KO:K11090 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 CTD:6741
HOVERGEN:HBG001407 OMA:ENAEMKS UniGene:Rn.24494 EMBL:BC081780
IPI:IPI00471902 RefSeq:NP_112381.2 SMR:Q66HM7 STRING:Q66HM7
Ensembl:ENSRNOT00000011174 GeneID:81783 KEGG:rno:81783
InParanoid:Q66HM7 NextBio:615635 Genevestigator:Q66HM7
Uniprot:Q66HM7
Length = 415
Score = 144 (55.7 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ + F R+ LT++ +I+ +
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>UNIPROTKB|F1MZU1 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:DAAA02020719 IPI:IPI00714415
PRIDE:F1MZU1 Ensembl:ENSBTAT00000011109 Uniprot:F1MZU1
Length = 951
Score = 147 (56.8 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 35/79 (44%), Positives = 46/79 (58%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTXXXX 462
QI+YYFS NL +D FL+ MD G++P+TLIASF RV+ LT++I LI +L+ S
Sbjct: 265 QIEYYFSVDNLERDFFLRRKMDADGFLPMTLIASFHRVQALTTDISLIFAALKDSKVVEI 324
Query: 463 XXXXXXXXNEWMKWIATPG 481
E KW PG
Sbjct: 325 VEEKVRRREEPEKW-PLPG 342
>ZFIN|ZDB-GENE-030131-223 [details] [associations]
symbol:ssb "Sjogren syndrome antigen B (autoantigen
La)" species:7955 "Danio rerio" [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-223 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:CABZ01067486
EMBL:BC045392 IPI:IPI00506214 RefSeq:NP_955841.1 UniGene:Dr.3463
SMR:Q7ZTI0 STRING:Q7ZTI0 Ensembl:ENSDART00000041627 GeneID:321504
KEGG:dre:321504 InParanoid:Q7ZTI0 NextBio:20807405 Uniprot:Q7ZTI0
Length = 401
Score = 138 (53.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDSL 454
L + QI+YYF D NL +D+FLK + D GWVP+ + F R+K+LTS +I++SL
Sbjct: 10 LEKKVAEQIEYYFGDHNLPRDKFLKEQLQLDDGWVPLETMLKFNRLKSLTSEESVIVESL 69
Query: 455 RTS 457
S
Sbjct: 70 LKS 72
>UNIPROTKB|Q6PKG0 [details] [associations]
symbol:LARP1 "La-related protein 1" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0016239
"positive regulation of macroautophagy" evidence=IMP]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR006607 SMART:SM00684 EMBL:BC001460
EMBL:BC033856 EMBL:AK091465 EMBL:AB018274 EMBL:AL133034
IPI:IPI00185919 IPI:IPI00411690 PIR:T42646 RefSeq:NP_056130.2
UniGene:Hs.292078 ProteinModelPortal:Q6PKG0 SMR:Q6PKG0
IntAct:Q6PKG0 MINT:MINT-1631511 STRING:Q6PKG0 PhosphoSite:Q6PKG0
DMDM:73621135 PaxDb:Q6PKG0 PRIDE:Q6PKG0 DNASU:23367
Ensembl:ENST00000336314 Ensembl:ENST00000518297 GeneID:23367
KEGG:hsa:23367 UCSC:uc003lvo.3 UCSC:uc010jie.1 CTD:23367
GeneCards:GC05P154092 HGNC:HGNC:29531 HPA:CAB015222 MIM:612059
neXtProt:NX_Q6PKG0 PharmGKB:PA142671564 HOGENOM:HOG000113283
HOVERGEN:HBG054322 InParanoid:Q6PKG0 OMA:GSEPATY ChiTaRS:LARP1
GenomeRNAi:23367 NextBio:45430 PMAP-CutDB:Q6PKG0 Bgee:Q6PKG0
CleanEx:HS_LARP1 Genevestigator:Q6PKG0 GermOnline:ENSG00000155506
Uniprot:Q6PKG0
Length = 1096
Score = 150 (57.9 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTXXXX 462
QI+YYFS NL +D FL+ MD G++PITLIASF RV+ LT++I LI +L+ S
Sbjct: 410 QIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEI 469
Query: 463 XXXXXXXXNEWMKWIATP 480
E KW P
Sbjct: 470 VDEKVRRREEPEKWPLPP 487
Score = 38 (18.4 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 161 GSVSGTQVPLIPHLP 175
GS S T VP+ P P
Sbjct: 290 GSESATYVPVAPPTP 304
>UNIPROTKB|F1P301 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02020271 IPI:IPI01017187
Ensembl:ENSGALT00000038515 ArrayExpress:F1P301 Uniprot:F1P301
Length = 205
Score = 128 (50.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDSL 454
L + + QI+YYF + NL +D+FLK + D GWVP+ ++ F R+ L+ + +I+++L
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSKDFGVIVEAL 72
Query: 455 RTS 457
R S
Sbjct: 73 RKS 75
>RGD|1592944 [details] [associations]
symbol:LOC680385 "similar to Sjogren syndrome antigen B"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592944 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 OrthoDB:EOG4C2HB3 IPI:IPI00767397
RefSeq:XP_001058361.1 RefSeq:XP_002726506.1 PRIDE:D3ZLH9
Ensembl:ENSRNOT00000015427 GeneID:680385 KEGG:rno:680385
UCSC:RGD:1592944 OMA:ATESEKC NextBio:718589 Uniprot:D3ZLH9
Length = 402
Score = 135 (52.6 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWV + + F R+ LT++ +I+ +
Sbjct: 12 ALEAKICHQIEYYFGDFNLPQDKFLKEQIKLDEGWVSLETMIKFNRLNRLTTDFNVIVQA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>DICTYBASE|DDB_G0281763 [details] [associations]
symbol:DDB_G0281763 "Lupus La protein" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 SMART:SM00360
dictyBase:DDB_G0281763 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
RefSeq:XP_640625.1 ProteinModelPortal:Q54TG6 STRING:Q54TG6
EnsemblProtists:DDB0233755 GeneID:8623235 KEGG:ddi:DDB_G0281763
InParanoid:Q54TG6 OMA:NDDANAC ProtClustDB:CLSZ2430537
Uniprot:Q54TG6
Length = 354
Score = 133 (51.9 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/66 (39%), Positives = 49/66 (74%)
Query: 397 AAMLIHQIDYYFSDANLVKDEFLKS----NMDDQGWVPITLIASFPRVKNLTSNIQLILD 452
+ ++ Q++YYFSD+N +D+FL+S N+D+ ++ I +IASF R+K +++++QLI +
Sbjct: 6 STQILKQVEYYFSDSNFPRDKFLRSEAAKNVDN--YISIDVIASFNRMKTISTDLQLITE 63
Query: 453 SLRTST 458
+L+ ST
Sbjct: 64 ALKKST 69
>ASPGD|ASPL0000062948 [details] [associations]
symbol:AN1288 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] EMBL:BN001308 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AACD01000017 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 OrthoDB:EOG46MFST RefSeq:XP_658892.1
EnsemblFungi:CADANIAT00001332 GeneID:2877068 KEGG:ani:AN1288.2
HOGENOM:HOG000208218 OMA:TFSYAQA Uniprot:Q5BDU2
Length = 734
Score = 138 (53.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSL 454
S+ M+ Q+DYYFS NL KD +L+ +MD QG+V + +IA+F RVK L+ + +L+ +
Sbjct: 571 SVIGMITLQLDYYFSVDNLCKDIYLRKHMDSQGFVALNVIANFKRVKQLSEDFELLRHAS 630
Query: 455 R 455
R
Sbjct: 631 R 631
Score = 41 (19.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 125 VGPVMGAASWP 135
V PV AASWP
Sbjct: 220 VPPVADAASWP 230
>FB|FBgn0011638 [details] [associations]
symbol:La "La autoantigen-like" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0008098
"5S rRNA primary transcript binding" evidence=NAS;IDA] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:AE014134 GO:GO:0000166 GO:GO:0003677 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:U07652 EMBL:L32988 PIR:A53773 PIR:A53781 RefSeq:NP_477014.1
RefSeq:NP_724257.1 UniGene:Dm.4836 ProteinModelPortal:P40796
SMR:P40796 DIP:DIP-19001N IntAct:P40796 MINT:MINT-785398
STRING:P40796 PaxDb:P40796 EnsemblMetazoa:FBtr0081373
EnsemblMetazoa:FBtr0081374 GeneID:35305 KEGG:dme:Dmel_CG10922
CTD:35305 FlyBase:FBgn0011638 InParanoid:P40796 OMA:EHNEERR
OrthoDB:EOG4GF1X7 PhylomeDB:P40796 GenomeRNAi:35305 NextBio:792866
Bgee:P40796 GermOnline:CG10922 GO:GO:0008098 Uniprot:P40796
Length = 390
Score = 130 (50.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/60 (36%), Positives = 44/60 (73%)
Query: 400 LIHQIDYYFSDANLVKDEFLKSNM--DDQGWVPITLIASFPRVKNLTSNIQLILDSLRTS 457
+I Q++YYF DANL +D+FL+ + ++ GWVP++++ +F R+ +L++++ I+ +L S
Sbjct: 54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKS 113
>FB|FBgn0261618 [details] [associations]
symbol:larp "La related protein" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0035071
"salivary gland cell autophagic cell death" evidence=IEP]
[GO:0048102 "autophagic cell death" evidence=IEP] [GO:0003674
"molecular_function" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0051225 "spindle assembly" evidence=IMP]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0051299 "centrosome separation" evidence=IMP] [GO:0007053
"spindle assembly involved in male meiosis" evidence=IMP]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0007140 "male
meiosis" evidence=IMP] [GO:0000001 "mitochondrion inheritance"
evidence=IMP] [GO:0035186 "syncytial blastoderm mitotic cell cycle"
evidence=IMP] EMBL:AE014297 GO:GO:0005829 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0000001 GO:GO:0035071
GO:GO:0035186 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 InterPro:IPR006607 SMART:SM00684
ChiTaRS:LARP1 GeneTree:ENSGT00390000000523 EMBL:AF221108
EMBL:AY113653 EMBL:AY118468 EMBL:BT100187 RefSeq:NP_001163757.1
RefSeq:NP_001247347.1 RefSeq:NP_001247348.1 RefSeq:NP_524998.1
RefSeq:NP_733244.5 RefSeq:NP_733245.1 IntAct:Q9VAW5 STRING:Q9VAW5
PaxDb:Q9VAW5 PRIDE:Q9VAW5 EnsemblMetazoa:FBtr0301180
EnsemblMetazoa:FBtr0306389 EnsemblMetazoa:FBtr0306390 GeneID:53567
KEGG:dme:Dmel_CG42551 CTD:53567 FlyBase:FBgn0261618
InParanoid:Q9VAW5 OMA:EPEINEM PhylomeDB:Q9VAW5 GenomeRNAi:53567
NextBio:841422 Bgee:Q9VAW5 GermOnline:CG14066 GO:GO:0007053
Uniprot:Q9VAW5
Length = 1673
Score = 143 (55.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 27/63 (42%), Positives = 45/63 (71%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSL 454
S+ + Q++YYFS NL D FL+ MD +G++P+TLIASF RV LT+++ +I++++
Sbjct: 728 SIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVNAI 787
Query: 455 RTS 457
+ S
Sbjct: 788 KES 790
Score = 42 (19.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 290 GQRGDGNYNNNFGGRHDQDRGNYSNARDAHVQPQRGPPR 328
G RGDG GGR + P+ G PR
Sbjct: 146 GGRGDGQKPQQAGGRRVPGSSDTERKSVRPRAPRGGSPR 184
>UNIPROTKB|F1NYE7 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS
EMBL:AADN02020271 IPI:IPI00680677 Ensembl:ENSGALT00000033213
ArrayExpress:F1NYE7 Uniprot:F1NYE7
Length = 404
Score = 128 (50.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDSL 454
L + + QI+YYF + NL +D+FLK + D GWVP+ ++ F R+ L+ + +I+++L
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSKDFGVIVEAL 72
Query: 455 RTS 457
R S
Sbjct: 73 RKS 75
>TAIR|locus:2170478 [details] [associations]
symbol:LARP6a "La related protein 6a" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0048193
"Golgi vesicle transport" evidence=RCA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 HSSP:P19339 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 KO:K15191 HOGENOM:HOG000244026
EMBL:AY050403 EMBL:BT000588 IPI:IPI00526923 RefSeq:NP_851141.1
UniGene:At.9180 ProteinModelPortal:Q94A38 SMR:Q94A38 IntAct:Q94A38
STRING:Q94A38 PRIDE:Q94A38 EnsemblPlants:AT5G46250.1 GeneID:834667
KEGG:ath:AT5G46250 TAIR:At5g46250 InParanoid:Q94A38 OMA:WRNGMRV
PhylomeDB:Q94A38 ProtClustDB:CLSN2680453 Genevestigator:Q94A38
Uniprot:Q94A38
Length = 422
Score = 129 (50.5 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 27/61 (44%), Positives = 44/61 (72%)
Query: 400 LIHQIDYYFSDANLVKDEFLKSNM--DDQGWVPITLIASFPRVKNLTSNIQLILDSLRTS 457
+I Q++YYFSD NL D+FL + M + +G+VPI+ IA+F ++K LT + LI+ +L+ S
Sbjct: 107 IIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKES 166
Query: 458 T 458
+
Sbjct: 167 S 167
Score = 39 (18.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 294 DGNYNNNFGGRHDQDRGNYSNARDAHVQP 322
D ++ N G DQD G D V P
Sbjct: 71 DFDHERNSGEDRDQDHGENPVETDGVVVP 99
>FB|FBgn0035424 [details] [associations]
symbol:CG11505 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
EMBL:AE014296 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 HSSP:Q71RC2
GeneTree:ENSGT00530000063417 EMBL:BT010118 RefSeq:NP_647793.1
RefSeq:NP_728843.1 RefSeq:NP_995985.2 ProteinModelPortal:Q9I7T7
SMR:Q9I7T7 IntAct:Q9I7T7 MINT:MINT-298656 STRING:Q9I7T7
PaxDb:Q9I7T7 EnsemblMetazoa:FBtr0073046 GeneID:38399
KEGG:dme:Dmel_CG11505 UCSC:CG11505-RB FlyBase:FBgn0035424
InParanoid:Q9VZS2 OMA:TPNINAS OrthoDB:EOG4V15H8 PhylomeDB:Q9I7T7
ChiTaRS:CG11505 GenomeRNAi:38399 NextBio:808431 Bgee:Q9I7T7
Uniprot:Q9I7T7
Length = 1531
Score = 133 (51.9 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLR 455
L ML Q++YYFS NL D +L S MD +VPI +A F V+ LT++I LI + LR
Sbjct: 268 LKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLITEVLR 327
Query: 456 TS 457
S
Sbjct: 328 ES 329
>UNIPROTKB|D6RFF0 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000113284
HGNC:HGNC:24912 ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966774
ProteinModelPortal:D6RFF0 SMR:D6RFF0 Ensembl:ENST00000505034
ArrayExpress:D6RFF0 Bgee:D6RFF0 Uniprot:D6RFF0
Length = 299
Score = 123 (48.4 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 26/62 (41%), Positives = 43/62 (69%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLR 455
A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +LR
Sbjct: 36 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALR 95
Query: 456 TS 457
+S
Sbjct: 96 SS 97
>WB|WBGene00016653 [details] [associations]
symbol:C44E4.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
EMBL:FO080862 GO:GO:0030529 GO:GO:0040027 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
PIR:T30953 RefSeq:NP_491411.1 ProteinModelPortal:O01806 SMR:O01806
STRING:O01806 PaxDb:O01806 EnsemblMetazoa:C44E4.4 GeneID:172070
KEGG:cel:CELE_C44E4.4 UCSC:C44E4.4 CTD:172070 WormBase:C44E4.4
HOGENOM:HOG000022257 InParanoid:O01806 OMA:KSANSEI NextBio:873891
Uniprot:O01806
Length = 396
Score = 125 (49.1 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 21/59 (35%), Positives = 42/59 (71%)
Query: 400 LIHQIDYYFSDANLVKDEFLKSNM-DDQGWVPITLIASFPRVKNLTSNIQLILDSLRTS 457
+I Q++YYF + NL +D+FL+ + +D GWVPIT + +F R+ +++ + + I ++++ S
Sbjct: 16 IIKQLEYYFGNINLPRDKFLQEKLKEDDGWVPITTMLNFNRLASISKDTEKIANAVKNS 74
>ZFIN|ZDB-GENE-030131-6896 [details] [associations]
symbol:larp7 "La ribonucleoprotein domain family,
member 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6896 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
EMBL:BC049455 IPI:IPI00509628 RefSeq:NP_956224.1 UniGene:Dr.29131
HSSP:Q7YZ92 ProteinModelPortal:Q7ZWE3 STRING:Q7ZWE3 PRIDE:Q7ZWE3
GeneID:334956 KEGG:dre:334956 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 InParanoid:Q7ZWE3 KO:K15191 OrthoDB:EOG4TXBS0
NextBio:20810607 ArrayExpress:Q7ZWE3 InterPro:IPR014886
Pfam:PF08777 Uniprot:Q7ZWE3
Length = 555
Score = 126 (49.4 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 23/58 (39%), Positives = 42/58 (72%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLRTST 458
Q++++F D NL KD F+KS ++ G++ I ++ +F R+KNLT++++LI +L+ ST
Sbjct: 49 QVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNST 106
>UNIPROTKB|F1MR14 [details] [associations]
symbol:F1MR14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:DAAA02016483 EMBL:DAAA02016480 EMBL:DAAA02016481
EMBL:DAAA02016482 IPI:IPI00691372 Ensembl:ENSBTAT00000012693
ArrayExpress:F1MR14 Uniprot:F1MR14
Length = 578
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 25/62 (40%), Positives = 44/62 (70%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLR 455
A ++ Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +L+
Sbjct: 34 ADIVKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK 93
Query: 456 TS 457
+S
Sbjct: 94 SS 95
>UNIPROTKB|E1BVY8 [details] [associations]
symbol:LOC420093 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00510000048191 EMBL:AADN02072211 IPI:IPI00821190
Ensembl:ENSGALT00000041247 Uniprot:E1BVY8
Length = 173
Score = 112 (44.5 bits), Expect = 0.00016, P = 0.00016
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDS 453
L ++ Q+++Y SD NL KD FL ++ G+V I L+ SF +VK LT + +L L +
Sbjct: 77 LIRRIVSQVEFYLSDENLAKDAFLLKHVQKNKLGFVSIKLLTSFKKVKYLTRDWRLTLYA 136
Query: 454 LRTS 457
LR S
Sbjct: 137 LRFS 140
>POMBASE|SPAC57A10.10c [details] [associations]
symbol:sla1 "La protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006386 "termination of RNA
polymerase III transcription" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0034307 "regulation
of ascospore formation" evidence=IMP] [GO:0034414 "tRNA 3'-trailer
cleavage, endonucleolytic" evidence=IMP] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IGI] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC57A10.10c GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0030529 GO:GO:0031137 InterPro:IPR006630
PROSITE:PS50961 EMBL:AF022949 EMBL:AB011371 PIR:T38937 PIR:T43542
RefSeq:NP_593315.1 ProteinModelPortal:P87058 STRING:P87058
PRIDE:P87058 EnsemblFungi:SPAC57A10.10c.1 GeneID:2541530
KEGG:spo:SPAC57A10.10c eggNOG:COG5193 HOGENOM:HOG000113277
KO:K11090 OMA:FFEENAG OrthoDB:EOG43JGF6 NextBio:20802627
GO:GO:0034307 GO:GO:0006386 GO:GO:0034414 Pfam:PF05383
SMART:SM00715 Uniprot:P87058
Length = 298
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 398 AMLIHQIDYYFSDANLVKDEFL-KSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRT 456
A ++ Q+++YFSD NL D+FL ++ + GWVPI IA+F R++ ++ I+++LR
Sbjct: 65 AEVLKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRFQP-LEAIVNALRK 123
Query: 457 S 457
S
Sbjct: 124 S 124
>UNIPROTKB|Q4G0J3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:CH471057
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 HSSP:P05455 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 EMBL:EU667388 EMBL:AF068284 EMBL:BC066945
EMBL:BC107709 EMBL:AL049996 IPI:IPI00294742 IPI:IPI00395536
PIR:T08692 RefSeq:NP_001253968.1 RefSeq:NP_056269.1
RefSeq:NP_057732.2 UniGene:Hs.713663 ProteinModelPortal:Q4G0J3
SMR:Q4G0J3 DIP:DIP-47624N IntAct:Q4G0J3 MINT:MINT-4540675
STRING:Q4G0J3 PhosphoSite:Q4G0J3 DMDM:121945944 PaxDb:Q4G0J3
PRIDE:Q4G0J3 Ensembl:ENST00000324052 Ensembl:ENST00000344442
Ensembl:ENST00000509061 GeneID:51574 KEGG:hsa:51574 UCSC:uc003iay.3
GeneCards:GC04P113559 HGNC:HGNC:24912 HPA:HPA026842 HPA:HPA027930
MIM:612026 neXtProt:NX_Q4G0J3 PharmGKB:PA145148525
InParanoid:Q4G0J3 ChiTaRS:LARP7 GenomeRNAi:51574 NextBio:55403
ArrayExpress:Q4G0J3 Bgee:Q4G0J3 CleanEx:HS_LARP7
Genevestigator:Q4G0J3 Uniprot:Q4G0J3
Length = 582
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 26/62 (41%), Positives = 43/62 (69%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLR 455
A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +LR
Sbjct: 36 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALR 95
Query: 456 TS 457
+S
Sbjct: 96 SS 97
>SGD|S000002923 [details] [associations]
symbol:SLF1 "RNA binding protein that associates with
polysomes" species:4932 "Saccharomyces cerevisiae" [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0006417 "regulation of translation"
evidence=IGI;IMP;IPI] [GO:0006878 "cellular copper ion homeostasis"
evidence=IMP;IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] SGD:S000002923 GO:GO:0005737
GO:GO:0006417 GO:GO:0006878 EMBL:BK006938 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 EMBL:U33057 RefSeq:NP_010803.3
GeneID:852127 KEGG:sce:YDR515W GO:GO:0005844 KO:K09569
RefSeq:NP_010807.3 GeneID:852131 KEGG:sce:YDR519W
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:U30375 EMBL:AY692939 PIR:S59742
ProteinModelPortal:Q12034 SMR:Q12034 DIP:DIP-2938N IntAct:Q12034
MINT:MINT-574898 STRING:Q12034 PaxDb:Q12034 EnsemblFungi:YDR515W
CYGD:YDR515w GeneTree:ENSGT00530000067375 OrthoDB:EOG46MFST
NextBio:970519 Genevestigator:Q12034 GermOnline:YDR515W
Uniprot:Q12034
Length = 447
Score = 109 (43.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 402 HQIDYYFSDANLVKDEFLKSNMD--DQGWVPITLIASFPRVKNLT--SNIQLILDSLR 455
+QI++YFS+ NL DEFL+S + G++P++LI F R+ NL+ + LIL S+R
Sbjct: 277 NQIEFYFSEENLKTDEFLRSKFKKANDGFIPMSLIGKFYRMVNLSLGGDPNLILASMR 334
Score = 55 (24.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 238 NSFANLVTAMPDPSPREPLYRGSNWDARPVGGFVSQSHPMNDQRNSSRRGNYGQR-GDGN 296
++ +NL + D + + ++ S A G + + N+ N + NY R G
Sbjct: 137 SNVSNLESKPLDANAKVNIHSSSGATAN---GNIKRITNNNNSTNGRQSRNYQNRNGKTR 193
Query: 297 YNNNFGGRHDQDRGN 311
YNNN RH Q N
Sbjct: 194 YNNN--SRHSQAANN 206
>MGI|MGI:107634 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0035562 "negative regulation of chromatin binding"
evidence=IGI] [GO:0036093 "germ cell proliferation" evidence=IMP]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107634 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 CTD:51574
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 ChiTaRS:LARP7 EMBL:AC113952 EMBL:BC020127
EMBL:BC023165 EMBL:BC029178 EMBL:AK012726 EMBL:AK012772
EMBL:AK015041 EMBL:AK162147 IPI:IPI00340860 IPI:IPI00831552
RefSeq:NP_613059.2 UniGene:Mm.291032 ProteinModelPortal:Q05CL8
SMR:Q05CL8 IntAct:Q05CL8 STRING:Q05CL8 PhosphoSite:Q05CL8
PaxDb:Q05CL8 PRIDE:Q05CL8 DNASU:28036 Ensembl:ENSMUST00000029588
GeneID:28036 KEGG:mmu:28036 UCSC:uc008rhd.1
GeneTree:ENSGT00530000063464 InParanoid:Q05CL8 OMA:NNPPEDA
NextBio:306558 Bgee:Q05CL8 CleanEx:MM_LARP7 Genevestigator:Q05CL8
Uniprot:Q05CL8
Length = 570
Score = 122 (48.0 bits), Expect = 0.00026, P = 0.00026
Identities = 25/63 (39%), Positives = 45/63 (71%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLR 455
A + Q+D++F DANL KD+FL+ ++ G+V I+L+ SF ++K LT++ +LI +L+
Sbjct: 30 ADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK 89
Query: 456 TST 458
+S+
Sbjct: 90 SSS 92
>RGD|1592474 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0035562
"negative regulation of chromatin binding" evidence=ISO]
[GO:0036093 "germ cell proliferation" evidence=ISO] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 121 (47.7 bits), Expect = 0.00033, P = 0.00033
Identities = 25/63 (39%), Positives = 44/63 (69%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLR 455
A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +L+
Sbjct: 31 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK 90
Query: 456 TST 458
+S+
Sbjct: 91 SSS 93
>UNIPROTKB|Q5XI01 [details] [associations]
symbol:Larp7 "La-related protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 121 (47.7 bits), Expect = 0.00033, P = 0.00033
Identities = 25/63 (39%), Positives = 44/63 (69%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLR 455
A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +L+
Sbjct: 31 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK 90
Query: 456 TST 458
+S+
Sbjct: 91 SSS 93
>UNIPROTKB|I3LNK9 [details] [associations]
symbol:I3LNK9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464
Ensembl:ENSSSCT00000031777 OMA:NASEECE Uniprot:I3LNK9
Length = 580
Score = 121 (47.7 bits), Expect = 0.00034, P = 0.00034
Identities = 25/62 (40%), Positives = 43/62 (69%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLR 455
A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +L+
Sbjct: 36 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRKLIARALK 95
Query: 456 TS 457
+S
Sbjct: 96 SS 97
>UNIPROTKB|E2QW27 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AAEX03016829 ProteinModelPortal:E2QW27
Ensembl:ENSCAFT00000018607 Uniprot:E2QW27
Length = 582
Score = 121 (47.7 bits), Expect = 0.00034, P = 0.00034
Identities = 25/63 (39%), Positives = 44/63 (69%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLR 455
A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +L+
Sbjct: 35 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALK 94
Query: 456 TST 458
+S+
Sbjct: 95 SSS 97
>UNIPROTKB|F1S150 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA EMBL:FP236150
Ensembl:ENSSSCT00000009986 Uniprot:F1S150
Length = 582
Score = 121 (47.7 bits), Expect = 0.00034, P = 0.00034
Identities = 25/62 (40%), Positives = 43/62 (69%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLR 455
A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +L+
Sbjct: 36 ADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRKLIARALK 95
Query: 456 TS 457
+S
Sbjct: 96 SS 97
>UNIPROTKB|F1NJ86 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
Length = 233
Score = 114 (45.2 bits), Expect = 0.00036, P = 0.00036
Identities = 23/63 (36%), Positives = 43/63 (68%)
Query: 398 AMLIHQIDYYFSDANLVKDEFLKSNMDDQ--GWVPITLIASFPRVKNLTSNIQLILDSLR 455
A + Q+D++F D NL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +++
Sbjct: 38 ADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARAVK 97
Query: 456 TST 458
+S+
Sbjct: 98 SSS 100
>SGD|S000000542 [details] [associations]
symbol:SRO9 "Cytoplasmic RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0002181 "cytoplasmic translation"
evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005844 "polysome"
evidence=IDA] SGD:S000000542 GO:GO:0005737 EMBL:X59720
EMBL:BK006937 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0002181 GO:GO:0005844 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000067375 OrthoDB:EOG46MFST PIR:S19365
RefSeq:NP_009893.2 ProteinModelPortal:P25567 SMR:P25567
DIP:DIP-6638N IntAct:P25567 MINT:MINT-633857 STRING:P25567
PaxDb:P25567 PeptideAtlas:P25567 EnsemblFungi:YCL037C GeneID:850320
KEGG:sce:YCL037C CYGD:YCL037c HOGENOM:HOG000057093 OMA:VSTISIE
NextBio:965730 Genevestigator:P25567 GermOnline:YCL037C
Uniprot:P25567
Length = 434
Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 400 LIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLT--SNIQLILDSLR 455
+ QI+YYFS+ NL D +L+S + G+ P++LI+ F RV N++ + LIL +LR
Sbjct: 265 IARQIEYYFSEENLTVDNYLRSKLSKDGFAPLSLISKFYRVVNMSFGGDTNLILAALR 322
>UNIPROTKB|H9KZD5 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0022604
"regulation of cell morphogenesis" evidence=IEA] InterPro:IPR000504
SMART:SM00360 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063417 OMA:WTIANME EMBL:AADN02072425
EMBL:AADN02072426 Ensembl:ENSGALT00000009951 Uniprot:H9KZD5
Length = 750
Score = 121 (47.7 bits), Expect = 0.00048, P = 0.00048
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTS 457
Q+++ FS NL KD +L S MD +VPI IA+ +K LT+++ LILD LR+S
Sbjct: 126 QLEFCFSRENLSKDLYLMSQMDSDQFVPIWTIANMEGIKKLTTDMDLILDVLRSS 180
>FB|FBgn0260771 [details] [associations]
symbol:Larp7 "La related protein 7" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0097322 "7SK snRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:AE014298 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 KO:K15191
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
GO:GO:0097322 EMBL:AY061107 RefSeq:NP_524795.2 UniGene:Dm.31047
SMR:Q9W362 IntAct:Q9W362 STRING:Q9W362 EnsemblMetazoa:FBtr0301275
GeneID:44900 KEGG:dme:Dmel_CG42569 UCSC:CG12058-RA
FlyBase:FBgn0260771 InParanoid:Q9W362 OMA:PGLIVEC OrthoDB:EOG4CVDQ5
GenomeRNAi:44900 NextBio:837804 Uniprot:Q9W362
Length = 595
Score = 119 (46.9 bits), Expect = 0.00058, P = 0.00058
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTS 457
Q+++YF DANL KD FL+ ++ +VP+ + +F ++K LT ++Q I +L S
Sbjct: 66 QMEFYFGDANLSKDRFLRRYVEQDPYVPLEIFLTFNKIKTLTQDVQQIAKALSNS 120
>MGI|MGI:2443114 [details] [associations]
symbol:Larp4 "La ribonucleoprotein domain family, member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0007010 "cytoskeleton organization" evidence=ISO]
[GO:0022604 "regulation of cell morphogenesis" evidence=ISO]
InterPro:IPR000504 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2443114
GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 HOGENOM:HOG000004803
HOVERGEN:HBG055137 CTD:113251 EMBL:AK049756 EMBL:AK141743
IPI:IPI00828620 RefSeq:NP_001019697.2 UniGene:Mm.28811
UniGene:Mm.490671 ProteinModelPortal:Q8BWW4 SMR:Q8BWW4
PhosphoSite:Q8BWW4 PaxDb:Q8BWW4 PRIDE:Q8BWW4 GeneID:207214
KEGG:mmu:207214 UCSC:uc007xql.1 InParanoid:Q8BWW4 OrthoDB:EOG44MXRZ
NextBio:371897 CleanEx:MM_LARP4 Genevestigator:Q8BWW4
GermOnline:ENSMUSG00000023025 Uniprot:Q8BWW4
Length = 719
Score = 120 (47.3 bits), Expect = 0.00058, P = 0.00058
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLR 455
L L Q+++ FS NL KD +L S MD +VPI +A+ +K LT+N LIL+ LR
Sbjct: 115 LKECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLR 174
Query: 456 TS 457
+S
Sbjct: 175 SS 176
>SGD|S000002209 [details] [associations]
symbol:LHP1 "RNA binding protein required for maturation of
tRNA and U6 snRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0000049 "tRNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0008033 "tRNA processing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 SGD:S000002209 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0030529 GO:GO:0008033 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:L33023 EMBL:Z74099 EMBL:AY558373
EMBL:L13282 EMBL:X80801 PIR:B48600 RefSeq:NP_010232.1
ProteinModelPortal:P33399 SMR:P33399 DIP:DIP-6444N IntAct:P33399
MINT:MINT-652314 STRING:P33399 PaxDb:P33399 PeptideAtlas:P33399
EnsemblFungi:YDL051W GeneID:851509 KEGG:sce:YDL051W CYGD:YDL051w
OMA:NDGWVEL NextBio:968869 Genevestigator:P33399 GermOnline:YDL051W
Uniprot:P33399
Length = 275
Score = 112 (44.5 bits), Expect = 0.00095, P = 0.00095
Identities = 21/58 (36%), Positives = 39/58 (67%)
Query: 401 IHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDSLRTS 457
+ Q+++YFS+ N D FL++ + + GWVPI+ IA+F R+K + ++++LR+S
Sbjct: 34 LKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRMKKYRP-VDKVIEALRSS 90
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 547 409 0.00079 118 3 11 23 0.48 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 56
No. of states in DFA: 620 (66 KB)
Total size of DFA: 270 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.12u 0.20s 32.32t Elapsed: 00:00:02
Total cpu time: 32.12u 0.20s 32.32t Elapsed: 00:00:02
Start: Mon May 20 15:47:23 2013 End: Mon May 20 15:47:25 2013