BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008981
(547 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 64/89 (71%)
Query: 388 LMPVPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNI 447
+ PV E L + QI+YYFS NL +D FL+ MD+QG++PI+LIA F RV+ LT+N+
Sbjct: 207 VYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNL 266
Query: 448 QLILDSLRTSTVVEVQDDRVRRRNEWMKW 476
LIL++L+ ST VE+ D+++R++ E KW
Sbjct: 267 NLILEALKDSTEVEIVDEKMRKKIEPEKW 295
>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2
Length = 1096
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 60/89 (67%)
Query: 388 LMPVPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNI 447
L V + L + QI+YYFS NL +D FL+ MD G++PITLIASF RV+ LT++I
Sbjct: 395 LYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDI 454
Query: 448 QLILDSLRTSTVVEVQDDRVRRRNEWMKW 476
LI +L+ S VVE+ D++VRRR E KW
Sbjct: 455 SLIFAALKDSKVVEIVDEKVRRREEPEKW 483
>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2
Length = 1072
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLR 455
L + QI+YYFS NL +D FL+ MD G++PITLIASF RV+ LT++I LI +L+
Sbjct: 378 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 437
Query: 456 TSTVVEVQDDRVRRRNEWMKW 476
S VVE+ +++VRRR E KW
Sbjct: 438 DSKVVEMVEEKVRRREEPEKW 458
>sp|Q9P6K0|YLA3_SCHPO Uncharacterized HTH La-type RNA-binding protein C1527.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1527.03 PE=1 SV=1
Length = 475
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLR 455
+ A L Q++YYFS NL KD FL+ +MDD+G+VP+ +ASF R+K+ ++++ L+ + +
Sbjct: 325 VQAFLTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFNRIKSFSTDLNLLHAACK 384
Query: 456 TSTVVEVQDD-------RVRRRNEWMKWI 477
S +++V D +VRR+ W WI
Sbjct: 385 ASDIIDVAIDLQSPMSIKVRRKETWSPWI 413
>sp|Q9I7T7|Y1505_DROME La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505
PE=1 SV=2
Length = 1531
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 391 VPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLI 450
+P L ML Q++YYFS NL D +L S MD +VPI +A F V+ LT++I LI
Sbjct: 263 IPLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLI 322
Query: 451 LDSLRTSTVVEVQDDRVRRRNEWMKWIATPGRIS 484
+ LR S V+V D +R R + I IS
Sbjct: 323 TEVLRESPNVQVDDKGLRVRPNRKRCIIILREIS 356
>sp|Q26457|LA_AEDAL La protein homolog OS=Aedes albopictus PE=1 SV=1
Length = 383
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNM-DDQGWVPITLIASFPRVKNLTSNIQLILDS 453
L A I Q++YYF DANL +D+FL+ + D+GWVP+ ++ +F R+K+L+ + ++I+D+
Sbjct: 42 KLEASTIRQLEYYFGDANLARDKFLQEQISKDEGWVPVDVLLTFKRLKSLSEDKKVIVDA 101
Query: 454 LRTST--VVEVQDDRVRRR 470
+ S ++EV +DR + R
Sbjct: 102 IEKSDEGLIEVSEDREKLR 120
>sp|P05455|LA_HUMAN Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2
Length = 408
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R+ LT++ +I+++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 454 LRTST--VVEVQDDRVRRR 470
L S ++E+ +D+ + R
Sbjct: 72 LSKSKAELMEISEDKTKIR 90
>sp|P10881|LA_BOVIN Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2
Length = 404
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R+ LT++ +I+++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 454 LRTST--VVEVQDDRVRRR 470
L S ++E+ +D+ + R
Sbjct: 72 LSKSKAELMEISEDKTKIR 90
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSL 454
S+ + Q++YYFS NL D FL+ MD +G++P+TLIASF RV LT+++ +I++++
Sbjct: 728 SIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVNAI 787
Query: 455 RTSTVVEV-QDDRVRRRNEWMKW 476
+ S +E+ + +VR + W
Sbjct: 788 KESDKLELFEGYKVRTKTTPTTW 810
>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1
Length = 555
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 53/72 (73%), Gaps = 4/72 (5%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDD--QGWVPITLIASFPRVKNLTSNIQLILDSLRTSTVV 460
Q++++F D NL KD F+KS ++ G++ I ++ +F R+KNLT++++LI +L+ ST+V
Sbjct: 49 QVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIV 108
Query: 461 EVQDD--RVRRR 470
EV D+ R+RR+
Sbjct: 109 EVNDEGTRIRRK 120
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 56/80 (70%), Gaps = 4/80 (5%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDD--QGWVPITLIASFPRVKNLTSNIQLILDS 453
+ A + Q+D++F DANL KD+FL+ ++ G+V I+L+ SF ++K LT++ +LI +
Sbjct: 28 VLADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARA 87
Query: 454 LRTSTVVE--VQDDRVRRRN 471
L++S+VVE ++ R+RR+
Sbjct: 88 LKSSSVVELDLEGTRIRRKK 107
>sp|P32067|LA_MOUSE Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1
Length = 415
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ + F R+ LT++ +I+ +
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 454 LRTS--TVVEVQDDRVRRR 470
L S ++EV D+ + R
Sbjct: 72 LSKSKAKLMEVSADKTKIR 90
>sp|Q9BRS8|LARP6_HUMAN La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1
Length = 491
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 392 PEPSLAAMLIHQIDYYFSDANLVKDEFLKSNM--DDQGWVPITLIASFPRVKNLTSNIQL 449
P+ L L+ QI++YFSD NL KD FL ++ + G+V + L+ SF +VK+LT + +
Sbjct: 88 PDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147
Query: 450 ILDSLRTSTVVEVQDD--RVRR 469
+L+ S V+E+ +D +VRR
Sbjct: 148 TAHALKYSVVLELNEDHRKVRR 169
>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1
Length = 581
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDD--QGWVPITLIASFPRVKNLTSNIQLILDS 453
+ A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +
Sbjct: 34 VLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARA 93
Query: 454 LRTSTVVE--VQDDRVRRRN 471
LR+S VVE ++ R+RR+
Sbjct: 94 LRSSAVVELDLEGTRIRRKK 113
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 55/80 (68%), Gaps = 4/80 (5%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDD--QGWVPITLIASFPRVKNLTSNIQLILDS 453
+ A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +
Sbjct: 29 VLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARA 88
Query: 454 LRTSTVVE--VQDDRVRRRN 471
L++S+VVE ++ R+RR+
Sbjct: 89 LKSSSVVELDLEGTRIRRKK 108
>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1
Length = 582
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDD--QGWVPITLIASFPRVKNLTSNIQLILDS 453
+ A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +
Sbjct: 34 VLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARA 93
Query: 454 LRTSTVVE--VQDDRVRRRN 471
LR+S VVE ++ R+RR+
Sbjct: 94 LRSSAVVELDLEGTRIRRKK 113
>sp|P38656|LA_RAT Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1
Length = 415
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ + F R+ LT++ +I+ +
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 454 LRTST--VVEVQDDRVRRR 470
L S ++EV D+ + R
Sbjct: 72 LSKSKANLMEVSADKTKIR 90
>sp|Q8BN59|LARP6_MOUSE La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1
Length = 492
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 392 PEPSLAAMLIHQIDYYFSDANLVKDEFLKSNM--DDQGWVPITLIASFPRVKNLTSNIQL 449
P+ L L+ QI++YFSD NL KD FL ++ + G+V + L+ SF +VK+LT + +
Sbjct: 88 PDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147
Query: 450 ILDSLRTSTVVEVQDD--RVRR 469
+L+ S +E+ +D +VRR
Sbjct: 148 TAHALKYSVTLELNEDHRKVRR 169
>sp|Q8BWW4|LARP4_MOUSE La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2
Length = 719
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLR 455
L L Q+++ FS NL KD +L S MD +VPI +A+ +K LT+N LIL+ LR
Sbjct: 115 LKECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLR 174
Query: 456 TSTVVEVQD--DRVR 468
+S +V+V + ++VR
Sbjct: 175 SSPMVQVDEKGEKVR 189
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 53/79 (67%), Gaps = 4/79 (5%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDD--QGWVPITLIASFPRVKNLTSNIQLILDS 453
L A + Q+D++F D NL KD FL+ ++ G++ I+L+ASF ++K +T++ +LI +
Sbjct: 36 LLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARA 95
Query: 454 LRTSTVVEVQ--DDRVRRR 470
++ S+VVE+ ++RRR
Sbjct: 96 VKNSSVVEINLSGTKIRRR 114
>sp|P40796|LA_DROME La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2
Length = 390
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 400 LIHQIDYYFSDANLVKDEFLKSNM--DDQGWVPITLIASFPRVKNLTSNIQLILDSLRTS 457
+I Q++YYF DANL +D+FL+ + ++ GWVP++++ +F R+ +L++++ I+ +L S
Sbjct: 54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKS 113
Query: 458 T--VVEVQDDRVRRR 470
+VE+ +D++ R
Sbjct: 114 EEGLVEISEDKLSLR 128
>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1
Length = 427
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSN-MDDQGWVPITLIASFPRVKNLTSNIQLILDSL 454
L + QI+YYF D NL +D+FLK + D GWVP+ + F R+ LT++ +IL +L
Sbjct: 12 LDTKICEQIEYYFGDHNLPRDKFLKQQVLLDNGWVPLETMIKFNRLSKLTTDFNIILQAL 71
Query: 455 RTST--VVEVQDDRVRRR 470
+ S ++E+ +++ + R
Sbjct: 72 KKSKTELLEINEEKCKIR 89
>sp|P25567|SRO9_YEAST RNA-binding protein SRO9 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SRO9 PE=1 SV=2
Length = 434
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 381 FIPPAPVLMPVPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRV 440
F P PVLM + + QI+YYFS+ NL D +L+S + G+ P++LI+ F RV
Sbjct: 252 FYPVQPVLMAINN------IARQIEYYFSEENLTVDNYLRSKLSKDGFAPLSLISKFYRV 305
Query: 441 KNLT--SNIQLILDSLR 455
N++ + LIL +LR
Sbjct: 306 VNMSFGGDTNLILAALR 322
>sp|P28048|LAA_XENLA Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1
Length = 428
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 400 LIHQIDYYFSDANLVKDEFLKSN-MDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTST 458
+ QI+YYF D NL +D+FLK + D GWVP+ + F R+ LT++ IL +L+ S
Sbjct: 17 ICEQIEYYFGDHNLPRDKFLKQQILLDDGWVPLETMIKFNRLSKLTTDFNTILQALKKSK 76
Query: 459 --VVEVQDDRVRRR 470
++E+ +++ + R
Sbjct: 77 TELLEINEEKCKIR 90
>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3
Length = 724
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 391 VPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLI 450
V L L Q+++ FS NL KD +L S MD ++PI +A+ +K LT++ LI
Sbjct: 114 VSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLI 173
Query: 451 LDSLRTSTVVEVQD--DRVR 468
L+ LR+S +V+V + ++VR
Sbjct: 174 LEVLRSSPMVQVDEKGEKVR 193
>sp|P33399|LHP1_YEAST La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=LHP1 PE=1 SV=2
Length = 275
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 394 PSLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILD 452
P + + Q+++YFS+ N D FL++ + + GWVPI+ IA+F R+K + +++
Sbjct: 27 PEVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRMKKYRP-VDKVIE 85
Query: 453 SLRTSTVVEVQDD--RVRRR 470
+LR+S ++EV D V+RR
Sbjct: 86 ALRSSEILEVSADGENVKRR 105
>sp|P87058|LAH1_SCHPO La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=sla1 PE=1 SV=1
Length = 298
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 51/76 (67%), Gaps = 5/76 (6%)
Query: 398 AMLIHQIDYYFSDANLVKDEFL-KSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRT 456
A ++ Q+++YFSD NL D+FL ++ + GWVPI IA+F R++ ++ I+++LR
Sbjct: 65 AEVLKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRFQP-LEAIVNALRK 123
Query: 457 S-TVVEVQD--DRVRR 469
S ++EV + ++VRR
Sbjct: 124 SPELLEVDEAGEKVRR 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,618,435
Number of Sequences: 539616
Number of extensions: 12478375
Number of successful extensions: 121952
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 2505
Number of HSP's that attempted gapping in prelim test: 68509
Number of HSP's gapped (non-prelim): 28687
length of query: 547
length of database: 191,569,459
effective HSP length: 123
effective length of query: 424
effective length of database: 125,196,691
effective search space: 53083396984
effective search space used: 53083396984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)