Query 008981
Match_columns 547
No_of_seqs 233 out of 632
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:06:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 1.5E-31 5E-36 251.3 7.6 148 394-546 10-169 (193)
2 2cqk_A C-MPL binding protein; 100.0 1.2E-30 4E-35 227.6 7.0 88 390-479 8-97 (101)
3 1s29_A LA protein; winged heli 100.0 5.6E-30 1.9E-34 219.8 7.4 81 393-473 7-91 (92)
4 1s79_A Lupus LA protein; RRM, 97.6 3.5E-05 1.2E-09 65.4 3.8 66 479-547 7-72 (103)
5 1wez_A HnRNP H', FTP-3, hetero 97.6 3.1E-05 1.1E-09 65.3 3.2 60 484-547 16-75 (102)
6 2db1_A Heterogeneous nuclear r 97.6 4.2E-05 1.4E-09 65.8 3.7 64 483-546 17-80 (118)
7 2cpy_A RNA-binding protein 12; 97.5 7.4E-05 2.5E-09 63.5 4.7 62 484-547 16-77 (114)
8 2lmi_A GRSF-1, G-rich sequence 97.5 7.7E-05 2.6E-09 62.7 4.6 64 484-547 12-75 (107)
9 1wg5_A Heterogeneous nuclear r 97.5 8.9E-05 3.1E-09 62.0 4.5 62 484-547 16-77 (104)
10 2hgn_A Heterogeneous nuclear r 97.5 6.8E-05 2.3E-09 67.5 4.0 60 484-547 47-106 (139)
11 2hgm_A HNRPF protein, heteroge 97.4 0.0001 3.4E-09 65.6 4.3 62 484-547 43-104 (126)
12 2dnn_A RNA-binding protein 12; 97.4 8.4E-05 2.9E-09 64.1 3.2 60 484-547 17-76 (109)
13 2lxi_A RNA-binding protein 10; 97.4 8.2E-05 2.8E-09 61.2 3.0 60 485-546 3-63 (91)
14 2lkz_A RNA-binding protein 5; 97.3 0.00014 4.9E-09 61.1 3.9 63 482-545 8-71 (95)
15 2hgl_A HNRPF protein, heteroge 97.3 0.00012 4.1E-09 65.6 3.5 65 483-547 44-108 (136)
16 1iqt_A AUF1, heterogeneous nuc 97.3 0.00015 5E-09 56.3 3.1 59 487-547 3-61 (75)
17 2dha_A FLJ20171 protein; RRM d 97.3 9.9E-05 3.4E-09 65.1 2.4 63 485-547 25-88 (123)
18 3md3_A Nuclear and cytoplasmic 97.2 0.00024 8.3E-09 61.3 4.5 98 445-545 49-147 (166)
19 2dgw_A Probable RNA-binding pr 97.2 0.00014 4.9E-09 58.6 2.6 59 483-545 10-68 (91)
20 2dng_A Eukaryotic translation 97.2 0.00021 7.2E-09 59.1 3.6 60 483-545 15-74 (103)
21 2mss_A Protein (musashi1); RNA 97.2 0.00027 9.2E-09 54.9 3.7 56 489-546 5-60 (75)
22 1fje_B Nucleolin RBD12, protei 97.2 0.00056 1.9E-08 60.4 6.1 92 446-545 63-154 (175)
23 1wi8_A EIF-4B, eukaryotic tran 97.1 0.00035 1.2E-08 57.8 4.5 60 483-544 15-74 (104)
24 2dgs_A DAZ-associated protein 97.1 0.00022 7.5E-09 58.4 3.0 61 482-545 9-70 (99)
25 2j76_E EIF-4B, EIF4B, eukaryot 97.1 0.00025 8.4E-09 58.8 3.3 61 482-544 18-78 (100)
26 1wel_A RNA-binding protein 12; 97.1 0.00025 8.7E-09 60.9 3.5 61 484-546 26-86 (124)
27 2cqd_A RNA-binding region cont 97.1 0.00034 1.2E-08 59.0 4.1 63 482-546 16-78 (116)
28 3s7r_A Heterogeneous nuclear r 97.1 0.00017 5.9E-09 57.6 2.2 63 483-547 11-73 (87)
29 1h2v_Z 20 kDa nuclear CAP bind 97.1 0.00019 6.4E-09 63.8 2.4 61 483-545 39-99 (156)
30 1x4a_A Splicing factor, argini 97.1 0.0003 1E-08 58.7 3.5 58 483-545 22-79 (109)
31 2cq3_A RNA-binding protein 9; 97.1 0.00029 1E-08 58.1 3.3 59 483-545 15-73 (103)
32 1l3k_A Heterogeneous nuclear r 97.1 0.00054 1.8E-08 61.2 5.3 99 445-547 63-166 (196)
33 2fc9_A NCL protein; structure 97.1 0.00038 1.3E-08 57.2 3.8 56 484-545 16-71 (101)
34 2dnm_A SRP46 splicing factor; 97.0 0.00034 1.2E-08 57.7 3.4 62 482-545 12-73 (103)
35 2err_A Ataxin-2-binding protei 97.0 0.00033 1.1E-08 59.1 3.4 59 483-545 29-87 (109)
36 2dis_A Unnamed protein product 97.0 0.00042 1.4E-08 57.5 3.9 63 484-546 9-71 (109)
37 2cph_A RNA binding motif prote 97.0 0.00032 1.1E-08 57.9 3.1 61 483-545 15-76 (107)
38 1x4b_A Heterogeneous nuclear r 97.0 0.00039 1.3E-08 58.6 3.6 61 484-547 28-89 (116)
39 3p5t_L Cleavage and polyadenyl 97.0 0.00016 5.5E-09 58.7 1.1 60 486-545 4-63 (90)
40 2dh8_A DAZ-associated protein 97.0 0.00019 6.5E-09 59.4 1.5 60 484-545 17-76 (105)
41 1wf0_A TDP-43, TAR DNA-binding 97.0 0.00085 2.9E-08 53.9 5.3 56 484-546 6-61 (88)
42 2cpe_A RNA-binding protein EWS 97.0 0.0005 1.7E-08 57.6 4.1 64 482-545 14-83 (113)
43 1b7f_A Protein (SXL-lethal pro 97.0 0.00042 1.4E-08 60.3 3.7 95 446-545 54-149 (168)
44 2dnl_A Cytoplasmic polyadenyla 97.0 0.0004 1.4E-08 58.9 3.5 59 484-545 9-70 (114)
45 1x5u_A Splicing factor 3B subu 97.0 0.00043 1.5E-08 57.1 3.6 60 484-545 16-75 (105)
46 2rs2_A Musashi-1, RNA-binding 97.0 0.00036 1.2E-08 59.0 3.0 62 483-546 25-86 (109)
47 1uaw_A Mouse-musashi-1; RNP-ty 97.0 0.00031 1.1E-08 54.5 2.3 58 486-546 3-61 (77)
48 2cqi_A Nucleolysin TIAR; RNA r 96.9 0.00031 1E-08 58.0 2.3 59 483-545 15-73 (103)
49 3pgw_A U1-A; protein-RNA compl 96.9 0.0014 4.9E-08 62.5 7.3 55 484-545 208-262 (282)
50 1fxl_A Paraneoplastic encephal 96.9 0.00043 1.5E-08 59.8 3.3 95 446-545 53-148 (167)
51 2fy1_A RNA-binding motif prote 96.9 0.0004 1.4E-08 59.5 3.0 59 484-545 8-66 (116)
52 3ucg_A Polyadenylate-binding p 96.9 0.00042 1.4E-08 55.2 2.8 60 484-545 7-66 (89)
53 2ek1_A RNA-binding protein 12; 96.9 0.00032 1.1E-08 56.8 2.1 60 484-545 16-75 (95)
54 2e5h_A Zinc finger CCHC-type a 96.9 0.00057 2E-08 55.1 3.6 59 485-545 18-76 (94)
55 1x4h_A RNA-binding protein 28; 96.9 0.0005 1.7E-08 57.1 3.4 61 483-545 15-75 (111)
56 2cqg_A TDP-43, TAR DNA-binding 96.9 0.00036 1.2E-08 57.5 2.5 61 484-546 16-76 (103)
57 1whw_A Hypothetical protein ri 96.9 0.00063 2.1E-08 55.5 3.8 61 483-545 8-68 (99)
58 2la6_A RNA-binding protein FUS 96.9 0.00045 1.5E-08 56.7 2.9 63 483-545 13-81 (99)
59 1x5t_A Splicing factor 3B subu 96.9 0.00048 1.6E-08 55.8 3.0 59 485-545 7-66 (96)
60 2cqb_A Peptidyl-prolyl CIS-tra 96.9 0.00052 1.8E-08 56.3 3.2 60 484-545 13-72 (102)
61 2cpx_A Hypothetical protein FL 96.9 0.00039 1.3E-08 58.3 2.5 60 484-545 26-85 (115)
62 2krb_A Eukaryotic translation 96.9 0.00043 1.5E-08 54.9 2.5 55 488-546 6-66 (81)
63 3ex7_B RNA-binding protein 8A; 96.9 0.00066 2.2E-08 57.9 3.8 61 483-545 22-82 (126)
64 4f02_A Polyadenylate-binding p 96.9 0.00017 5.7E-09 67.1 0.0 94 446-545 66-161 (213)
65 2khc_A Testis-specific RNP-typ 96.9 0.00049 1.7E-08 58.0 2.9 61 483-545 40-100 (118)
66 2cqp_A RNA-binding protein 12; 96.8 0.00049 1.7E-08 56.1 2.7 61 483-545 15-75 (98)
67 2fc8_A NCL protein; structure 96.8 0.00048 1.6E-08 56.5 2.6 57 484-545 16-72 (102)
68 1x5s_A Cold-inducible RNA-bind 96.8 0.00054 1.8E-08 56.2 2.9 60 484-545 13-72 (102)
69 2cq4_A RNA binding motif prote 96.8 0.00052 1.8E-08 57.7 2.9 60 483-544 25-84 (114)
70 1x4e_A RNA binding motif, sing 96.8 0.00072 2.5E-08 53.7 3.5 60 484-545 6-65 (85)
71 2dnz_A Probable RNA-binding pr 96.8 0.00054 1.8E-08 55.4 2.8 59 484-545 6-65 (95)
72 4a8x_A RNA-binding protein wit 96.8 0.00036 1.2E-08 55.4 1.6 61 484-545 5-65 (88)
73 2dgv_A HnRNP M, heterogeneous 96.8 0.00039 1.3E-08 55.9 1.8 58 484-545 9-66 (92)
74 2dgo_A Cytotoxic granule-assoc 96.8 0.00051 1.7E-08 57.7 2.6 60 483-545 15-75 (115)
75 2dgp_A Bruno-like 4, RNA bindi 96.8 0.00065 2.2E-08 56.1 3.2 60 483-545 13-73 (106)
76 4fxv_A ELAV-like protein 1; RN 96.8 0.00041 1.4E-08 58.1 2.0 57 486-545 22-79 (99)
77 2do4_A Squamous cell carcinoma 96.8 0.00043 1.5E-08 56.8 2.0 59 484-545 18-76 (100)
78 1oo0_B CG8781-PA, drosophila Y 96.8 0.00091 3.1E-08 55.7 4.0 61 483-545 26-86 (110)
79 2d9p_A Polyadenylate-binding p 96.8 0.00041 1.4E-08 57.2 1.8 58 484-545 16-73 (103)
80 2cjk_A Nuclear polyadenylated 96.8 0.00055 1.9E-08 59.6 2.8 94 446-546 54-148 (167)
81 3mdf_A Peptidyl-prolyl CIS-tra 96.8 0.00072 2.5E-08 53.4 3.2 60 484-545 8-67 (85)
82 2ywk_A Putative RNA-binding pr 96.8 0.00043 1.5E-08 56.0 1.8 60 483-545 16-75 (95)
83 2cq0_A Eukaryotic translation 96.8 0.00061 2.1E-08 56.1 2.7 61 483-545 15-75 (103)
84 2cqc_A Arginine/serine-rich sp 96.8 0.00047 1.6E-08 55.6 2.0 60 484-545 16-75 (95)
85 2lea_A Serine/arginine-rich sp 96.8 0.0011 3.7E-08 58.4 4.4 61 483-545 47-107 (135)
86 2do0_A HnRNP M, heterogeneous 96.7 0.00048 1.7E-08 57.6 2.0 59 484-545 16-74 (114)
87 2g4b_A Splicing factor U2AF 65 96.7 0.001 3.5E-08 58.2 4.1 95 445-545 59-154 (172)
88 2cpz_A CUG triplet repeat RNA- 96.7 0.00075 2.6E-08 56.8 3.1 60 484-545 26-85 (115)
89 3ulh_A THO complex subunit 4; 96.7 0.00054 1.8E-08 56.7 2.1 60 483-545 29-88 (107)
90 2xs2_A Deleted in azoospermia- 96.7 0.00056 1.9E-08 56.3 2.2 59 484-545 10-68 (102)
91 3bs9_A Nucleolysin TIA-1 isofo 96.7 0.00053 1.8E-08 54.4 1.9 59 484-545 7-66 (87)
92 2kxn_B Transformer-2 protein h 96.7 0.00079 2.7E-08 59.0 3.0 60 484-545 47-106 (129)
93 2cpi_A CCR4-NOT transcription 96.7 0.0006 2.1E-08 57.6 2.2 61 485-545 17-81 (111)
94 2kn4_A Immunoglobulin G-bindin 96.7 0.0016 5.3E-08 57.5 4.9 61 483-545 70-130 (158)
95 2dhg_A TRNA selenocysteine ass 96.7 0.00055 1.9E-08 56.3 1.7 59 484-545 10-69 (104)
96 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.7 0.0011 3.6E-08 57.0 3.6 60 483-545 63-123 (140)
97 1u6f_A Tcubp1, RNA-binding pro 96.7 0.00044 1.5E-08 60.0 1.1 62 482-545 41-102 (139)
98 2cpf_A RNA binding motif prote 96.6 0.00034 1.2E-08 57.0 0.4 60 485-545 7-68 (98)
99 2x1f_A MRNA 3'-END-processing 96.6 0.00092 3.1E-08 54.5 2.9 59 485-545 4-62 (96)
100 2dnh_A Bruno-like 5, RNA bindi 96.6 0.00067 2.3E-08 56.0 2.1 59 484-545 16-74 (105)
101 1fj7_A Nucleolin RBD1, protein 96.6 0.00044 1.5E-08 56.8 1.0 60 483-545 17-76 (101)
102 2kt5_A RNA and export factor-b 96.6 0.0011 3.6E-08 56.7 3.3 59 484-545 36-94 (124)
103 3q2s_C Cleavage and polyadenyl 96.6 0.00066 2.3E-08 65.2 2.1 61 485-545 70-130 (229)
104 1l3k_A Heterogeneous nuclear r 96.6 0.00081 2.8E-08 60.0 2.5 61 483-546 13-74 (196)
105 1x4c_A Splicing factor, argini 96.6 0.00086 2.9E-08 56.2 2.5 53 484-545 16-68 (108)
106 1p27_B RNA-binding protein 8A; 96.6 0.00093 3.2E-08 55.2 2.6 60 484-545 24-83 (106)
107 1x5o_A RNA binding motif, sing 96.6 0.0011 3.7E-08 55.6 2.9 59 484-545 26-84 (114)
108 4f25_A Polyadenylate-binding p 96.5 0.00049 1.7E-08 58.6 0.7 56 486-545 8-63 (115)
109 3nmr_A Cugbp ELAV-like family 96.5 0.00073 2.5E-08 59.0 1.7 60 483-545 95-154 (175)
110 2div_A TRNA selenocysteine ass 96.5 0.001 3.6E-08 54.2 2.4 60 484-545 10-70 (99)
111 3md1_A Nuclear and cytoplasmic 96.5 0.00089 3.1E-08 52.6 1.9 58 486-545 4-61 (83)
112 1why_A Hypothetical protein ri 96.5 0.0012 4E-08 54.0 2.6 54 484-545 18-71 (97)
113 2jwn_A Embryonic polyadenylate 96.5 0.00072 2.5E-08 57.5 1.4 59 484-545 37-96 (124)
114 1fjc_A Nucleolin RBD2, protein 96.5 0.00069 2.4E-08 55.0 1.2 56 483-545 16-71 (96)
115 2cq1_A PTB-like protein L; RRM 96.5 0.0013 4.4E-08 55.9 2.9 54 484-545 16-69 (101)
116 3s8s_A Histone-lysine N-methyl 96.5 0.0011 3.7E-08 56.7 2.3 60 484-545 7-66 (110)
117 1p1t_A Cleavage stimulation fa 96.5 0.00073 2.5E-08 55.5 1.2 60 484-545 9-68 (104)
118 2qfj_A FBP-interacting repress 96.4 0.0011 3.9E-08 60.0 2.5 97 446-545 79-185 (216)
119 2ytc_A PRE-mRNA-splicing facto 96.4 0.0013 4.4E-08 52.1 2.4 55 483-545 12-66 (85)
120 3n9u_C Cleavage and polyadenyl 96.4 0.00085 2.9E-08 60.9 1.4 61 485-545 57-117 (156)
121 2hzc_A Splicing factor U2AF 65 96.4 0.0015 5.1E-08 51.8 2.6 60 483-544 6-70 (87)
122 2jrs_A RNA-binding protein 39; 96.4 0.0012 4E-08 55.9 2.0 61 483-545 26-86 (108)
123 1wex_A Hypothetical protein (r 96.4 0.0015 5.1E-08 55.7 2.6 54 484-545 16-69 (104)
124 2jvr_A Nucleolar protein 3; RN 96.4 0.0013 4.3E-08 57.0 2.2 56 485-545 30-85 (111)
125 2lcw_A RNA-binding protein FUS 95.3 0.00059 2E-08 57.7 0.0 62 485-546 9-76 (116)
126 2dnq_A RNA-binding protein 4B; 96.3 0.0016 5.6E-08 52.4 2.5 53 483-545 8-60 (90)
127 3smz_A Protein raver-1, ribonu 96.3 0.0028 9.4E-08 60.6 4.4 96 446-545 146-244 (284)
128 2ad9_A Polypyrimidine tract-bi 96.3 0.0017 5.7E-08 57.4 2.7 54 484-545 32-85 (119)
129 2yh0_A Splicing factor U2AF 65 96.3 0.0022 7.6E-08 57.3 3.5 59 484-545 115-174 (198)
130 2hvz_A Splicing factor, argini 96.3 0.0012 3.9E-08 54.3 1.5 53 486-545 3-55 (101)
131 3beg_B Splicing factor, argini 96.3 0.0011 3.9E-08 56.4 1.4 51 486-545 19-69 (115)
132 2cqh_A IGF-II mRNA-binding pro 96.2 0.0014 4.8E-08 53.0 1.6 54 484-545 9-62 (93)
133 2jvo_A Nucleolar protein 3; nu 96.2 0.002 6.8E-08 54.6 2.4 53 483-545 31-83 (108)
134 2cjk_A Nuclear polyadenylated 96.2 0.0025 8.6E-08 55.4 3.2 60 484-546 4-64 (167)
135 1sjq_A Polypyrimidine tract-bi 96.2 0.0014 4.8E-08 56.9 1.5 54 484-545 17-70 (105)
136 1qm9_A Polypyrimidine tract-bi 96.2 0.0053 1.8E-07 55.4 5.3 56 484-545 121-176 (198)
137 2cpj_A Non-POU domain-containi 96.2 0.0022 7.7E-08 52.5 2.5 54 484-545 16-69 (99)
138 2dgu_A Heterogeneous nuclear r 96.2 0.0019 6.4E-08 53.4 2.1 52 484-545 12-63 (103)
139 2m2b_A RNA-binding protein 10; 96.1 0.0029 1E-07 54.8 3.3 60 484-545 24-84 (131)
140 2e5j_A Methenyltetrahydrofolat 96.1 0.0023 7.8E-08 52.4 2.5 56 483-545 19-74 (97)
141 2i2y_A Fusion protein consists 96.1 0.00092 3.1E-08 58.9 -0.1 56 483-545 73-128 (150)
142 2la4_A Nuclear and cytoplasmic 96.1 0.0032 1.1E-07 51.6 3.1 54 484-545 28-81 (101)
143 2ki2_A SS-DNA binding protein 96.1 0.0016 5.5E-08 52.2 1.3 57 486-545 4-60 (90)
144 3r27_A HnRNP L, heterogeneous 96.1 0.0026 8.9E-08 54.8 2.6 55 483-545 21-75 (100)
145 3d2w_A TAR DNA-binding protein 96.1 0.0042 1.4E-07 50.8 3.8 53 485-544 13-65 (89)
146 1x4f_A Matrin 3; structural ge 96.1 0.0033 1.1E-07 55.0 3.3 54 484-545 26-80 (112)
147 3nmr_A Cugbp ELAV-like family 96.1 0.0018 6.3E-08 56.4 1.6 59 484-545 4-65 (175)
148 2e5g_A U6 snRNA-specific termi 96.0 0.0049 1.7E-07 50.1 4.1 55 484-545 9-63 (94)
149 2nlw_A Eukaryotic translation 96.0 0.0024 8.4E-08 53.3 2.3 57 485-545 17-79 (105)
150 2dgt_A RNA-binding protein 30; 96.0 0.0029 1E-07 51.1 2.7 53 483-545 10-62 (92)
151 3lqv_A PRE-mRNA branch site pr 96.0 0.0031 1.1E-07 52.9 2.9 57 484-545 9-65 (115)
152 1wg1_A KIAA1579 protein, homol 96.0 0.0021 7.1E-08 51.8 1.7 52 485-545 7-58 (88)
153 2dgx_A KIAA0430 protein; RRM d 96.0 0.0024 8.2E-08 52.4 2.1 56 485-545 11-70 (96)
154 2adc_A Polypyrimidine tract-bi 96.0 0.0055 1.9E-07 57.5 4.8 56 484-545 152-207 (229)
155 2f3j_A RNA and export factor b 96.0 0.0028 9.5E-08 58.6 2.7 59 484-545 89-147 (177)
156 1nu4_A U1A RNA binding domain; 96.0 0.0016 5.5E-08 52.8 1.0 58 483-545 8-69 (97)
157 3sde_A Paraspeckle component 1 96.0 0.0051 1.7E-07 58.9 4.4 89 446-545 67-155 (261)
158 1sjr_A Polypyrimidine tract-bi 96.0 0.0018 6.1E-08 60.6 1.2 58 482-545 45-102 (164)
159 1x4g_A Nucleolysin TIAR; struc 95.9 0.0026 8.9E-08 53.1 1.8 54 484-545 26-79 (109)
160 1wf1_A RNA-binding protein RAL 95.9 0.0031 1E-07 52.7 2.2 52 484-545 28-80 (110)
161 2qfj_A FBP-interacting repress 95.9 0.0032 1.1E-07 57.0 2.5 59 484-545 29-88 (216)
162 1x4d_A Matrin 3; structural ge 95.9 0.0032 1.1E-07 53.9 2.3 54 484-545 16-70 (102)
163 2xnq_A Nuclear polyadenylated 95.9 0.0031 1E-07 52.2 2.1 53 483-545 22-75 (97)
164 3md3_A Nuclear and cytoplasmic 95.9 0.002 6.8E-08 55.5 1.0 56 486-544 3-58 (166)
165 3smz_A Protein raver-1, ribonu 95.8 0.0082 2.8E-07 57.3 5.3 89 445-544 65-154 (284)
166 3ns6_A Eukaryotic translation 95.8 0.0018 6.1E-08 53.8 0.5 60 484-545 7-72 (100)
167 1b7f_A Protein (SXL-lethal pro 95.8 0.0031 1.1E-07 54.7 2.0 58 485-545 5-63 (168)
168 2dnp_A RNA-binding protein 14; 95.8 0.0033 1.1E-07 50.6 2.0 51 485-545 11-61 (90)
169 1fje_B Nucleolin RBD12, protei 95.8 0.002 6.8E-08 56.8 0.7 60 482-545 12-72 (175)
170 2cpd_A Apobec-1 stimulating pr 95.8 0.0035 1.2E-07 51.3 2.0 54 484-545 16-69 (99)
171 1whx_A Hypothetical protein ri 95.8 0.004 1.4E-07 52.8 2.5 54 484-545 11-64 (111)
172 2kvi_A Nuclear polyadenylated 95.8 0.0037 1.3E-07 51.1 2.2 52 484-545 11-63 (96)
173 2g4b_A Splicing factor U2AF 65 95.7 0.0032 1.1E-07 55.0 1.7 60 484-545 5-69 (172)
174 2yh0_A Splicing factor U2AF 65 95.7 0.0029 1E-07 56.5 1.2 60 484-545 5-69 (198)
175 1fxl_A Paraneoplastic encephal 95.6 0.0031 1.1E-07 54.3 1.3 58 485-545 4-62 (167)
176 4f02_A Polyadenylate-binding p 95.6 0.0039 1.3E-07 57.8 1.9 60 483-545 15-75 (213)
177 1rk8_A CG8781-PA, CG8781-PA pr 95.5 0.0045 1.5E-07 55.7 1.9 60 484-545 73-132 (165)
178 2e44_A Insulin-like growth fac 95.4 0.0044 1.5E-07 50.2 1.5 58 483-545 15-72 (96)
179 2ghp_A U4/U6 snRNA-associated 95.4 0.0094 3.2E-07 57.1 3.9 96 446-544 168-271 (292)
180 3egn_A RNA-binding protein 40; 95.3 0.0027 9.3E-08 55.5 -0.4 62 484-545 46-110 (143)
181 2ghp_A U4/U6 snRNA-associated 95.2 0.006 2.1E-07 58.5 1.7 59 484-546 42-100 (292)
182 3tyt_A Heterogeneous nuclear r 95.1 0.014 4.8E-07 54.7 3.9 58 485-545 125-183 (205)
183 1qm9_A Polypyrimidine tract-bi 95.0 0.0096 3.3E-07 53.7 2.6 54 485-545 5-59 (198)
184 3pgw_S U1-70K; protein-RNA com 95.0 0.0081 2.8E-07 63.1 2.4 59 484-545 103-162 (437)
185 2d9o_A DNAJ (HSP40) homolog, s 95.0 0.007 2.4E-07 51.6 1.5 46 493-545 27-72 (100)
186 2adc_A Polypyrimidine tract-bi 95.0 0.0077 2.6E-07 56.5 1.8 55 484-545 35-90 (229)
187 3pgw_A U1-A; protein-RNA compl 95.0 0.012 4.1E-07 56.1 3.1 59 482-545 8-70 (282)
188 2cq2_A Hypothetical protein LO 94.9 0.0078 2.7E-07 52.9 1.6 49 489-545 33-81 (114)
189 2e5i_A Heterogeneous nuclear r 94.8 0.0093 3.2E-07 52.9 1.7 53 485-545 27-80 (124)
190 2wbr_A GW182, gawky, LD47780P; 94.6 0.008 2.7E-07 51.3 0.9 49 489-545 13-61 (89)
191 1x5p_A Negative elongation fac 94.5 0.015 5.1E-07 47.4 2.2 44 494-545 24-67 (97)
192 3zzy_A Polypyrimidine tract-bi 94.5 0.0093 3.2E-07 53.6 0.9 55 484-545 29-84 (130)
193 2pe8_A Splicing factor 45; RRM 94.3 0.025 8.6E-07 48.1 3.2 50 495-545 25-74 (105)
194 2a3j_A U1 small nuclear ribonu 94.2 0.022 7.6E-07 50.2 2.8 58 483-545 29-90 (127)
195 3v4m_A Splicing factor U2AF 65 93.8 0.018 6E-07 49.0 1.2 50 496-545 28-77 (105)
196 2bz2_A Negative elongation fac 93.8 0.032 1.1E-06 48.3 2.9 44 494-545 48-91 (121)
197 2diu_A KIAA0430 protein; struc 93.7 0.024 8.4E-07 49.1 2.0 48 486-545 12-64 (96)
198 3tyt_A Heterogeneous nuclear r 93.4 0.033 1.1E-06 52.2 2.4 54 485-545 6-60 (205)
199 3sde_A Paraspeckle component 1 93.2 0.041 1.4E-06 52.6 2.9 54 484-545 23-76 (261)
200 3tht_A Alkylated DNA repair pr 93.2 0.024 8.4E-07 58.4 1.3 55 483-545 20-74 (345)
201 2dit_A HIV TAT specific factor 93.0 0.019 6.6E-07 48.4 0.2 43 497-545 40-82 (112)
202 3s6e_A RNA-binding protein 39; 92.0 0.04 1.4E-06 47.9 0.9 43 497-545 31-73 (114)
203 1jmt_A Splicing factor U2AF 35 91.2 0.044 1.5E-06 46.4 0.3 45 498-545 41-86 (104)
204 3ue2_A Poly(U)-binding-splicin 88.8 0.076 2.6E-06 46.4 -0.2 49 497-545 39-89 (118)
205 1wfx_A Probable RNA 2'-phospho 88.6 0.42 1.4E-05 45.6 4.8 48 423-471 24-75 (186)
206 3u1l_A PRE-mRNA-splicing facto 87.3 0.16 5.6E-06 49.8 1.1 41 496-544 156-196 (240)
207 2j8a_A Histone-lysine N-methyl 86.0 0.18 6.1E-06 46.3 0.6 43 492-536 15-57 (136)
208 3htx_A HEN1; HEN1, small RNA m 84.9 0.86 3E-05 52.7 5.5 82 393-474 104-207 (950)
209 3dxb_A Thioredoxin N-terminall 79.4 0.4 1.4E-05 44.5 0.2 50 496-545 142-193 (222)
210 1owx_A Lupus LA protein, SS-B, 78.6 0.88 3E-05 40.5 2.1 51 487-545 22-74 (121)
211 2dnr_A Synaptojanin-1; RRM dom 78.1 0.75 2.6E-05 39.4 1.5 39 497-545 29-67 (91)
212 2dhx_A Poly (ADP-ribose) polym 69.6 2.1 7.2E-05 37.6 2.2 56 485-546 10-66 (104)
213 1ufw_A Synaptojanin 2; RNP dom 61.6 1.3 4.5E-05 38.3 -0.7 39 497-545 38-76 (95)
214 2k9m_A RNA polymerase sigma fa 50.1 9.3 0.00032 34.1 2.8 58 395-457 4-63 (130)
215 2k9l_A RNA polymerase sigma fa 49.4 16 0.00055 29.5 3.9 54 397-455 15-70 (76)
216 1whv_A Poly(A)-specific ribonu 43.4 11 0.00039 32.9 2.2 53 482-545 15-67 (100)
217 1wwh_A Nucleoporin 35, nucleop 39.8 9.5 0.00033 34.1 1.3 53 486-547 27-79 (119)
218 3ctr_A Poly(A)-specific ribonu 27.1 12 0.0004 32.8 -0.3 52 483-545 6-57 (101)
219 3pq1_A Poly(A) RNA polymerase; 20.2 25 0.00085 37.8 0.4 48 491-545 60-107 (464)
220 2lfv_A Protein DAMX; cell divi 24.5 24 0.00081 30.6 0.0 52 493-546 32-83 (106)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.97 E-value=1.5e-31 Score=251.34 Aligned_cols=148 Identities=24% Similarity=0.391 Sum_probs=121.9
Q ss_pred HHHHHHHHHhhhhhcCcCcccccchhhhccC-CCCcEEehhhccchhhhhcccCHHHHHHHHhcC--CcEEEcCC--eEe
Q 008981 394 PSLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDSLRTS--TVVEVQDD--RVR 468 (547)
Q Consensus 394 ~~L~~~I~kQVEYYFSDeNL~kD~FLr~~Md-~qG~VPLs~IasFnRVK~Lt~d~~lI~eALr~S--~~LEVsgd--KVR 468 (547)
++|+.+|++||||||||+||++|.||+++|+ ++|||+|.+|++|+|||+|+.|+++|++||+.| ..|+|+++ +||
T Consensus 10 ~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~~~vr 89 (193)
T 2voo_A 10 AALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIR 89 (193)
T ss_dssp HHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHTTTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTSSEEE
T ss_pred HHHHHHHHHHhheecchhhcccCHHHHHHhcccCCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecccceEE
Confidence 6899999999999999999999999999997 799999999999999999999999999999999 99999865 788
Q ss_pred eCCcccccCCCC-------CCceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhh
Q 008981 469 RRNEWMKWIATP-------GRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEAT 541 (547)
Q Consensus 469 Rr~~w~kwvp~~-------~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAk 541 (547)
|+.... .++. ...+++...+++...|.++|.++|..+|-..... -.+...+.++|.+||||.++|+|+
T Consensus 90 R~~~~p--~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~---i~~~~~~~~kG~aFVeF~~~e~A~ 164 (193)
T 2voo_A 90 RSPSKP--LPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ---MRRTLHKAFKGSIFVVFDSIESAK 164 (193)
T ss_dssp ECTTSC--CCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEE---EEECTTCCEEEEEEEEESSHHHHH
T ss_pred ecccCC--CcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEE---EEECCCCCcccEEEEEECCHHHHH
Confidence 873211 1221 1234566667889999999999999998422211 122334778999999999999999
Q ss_pred cCCCC
Q 008981 542 EEPNQ 546 (547)
Q Consensus 542 k~~~~ 546 (547)
++++.
T Consensus 165 ~A~~~ 169 (193)
T 2voo_A 165 KFVET 169 (193)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98753
No 2
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.96 E-value=1.2e-30 Score=227.58 Aligned_cols=88 Identities=35% Similarity=0.605 Sum_probs=80.9
Q ss_pred CCCcHHHHHHHHHhhhhhcCcCcccccchhhhccCCCCcEEehhhccchhhhhcccCHHHHHHHHhcCCcEEEcC--CeE
Q 008981 390 PVPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTVVEVQD--DRV 467 (547)
Q Consensus 390 P~~d~~L~~~I~kQVEYYFSDeNL~kD~FLr~~Md~qG~VPLs~IasFnRVK~Lt~d~~lI~eALr~S~~LEVsg--dKV 467 (547)
++.+++|+++|++||||||||+||++|.||+++||+||||||++|++|+|||+|+.|+++|++||+.|++|||++ +||
T Consensus 8 ~~~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~md~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~kV 87 (101)
T 2cqk_A 8 AVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKV 87 (101)
T ss_dssp SCCHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHSCTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSEE
T ss_pred CCCHHHHHHHHHHHHHhhcchhhhccCHHHHHhhhcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCee
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999985 589
Q ss_pred eeCCcccccCCC
Q 008981 468 RRRNEWMKWIAT 479 (547)
Q Consensus 468 RRr~~w~kwvp~ 479 (547)
||+.+ +|+++
T Consensus 88 Rr~~~--~~i~~ 97 (101)
T 2cqk_A 88 RPSHK--RCISG 97 (101)
T ss_dssp EECCS--CCCCS
T ss_pred eeCCC--CCcCC
Confidence 99854 56543
No 3
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.96 E-value=5.6e-30 Score=219.85 Aligned_cols=81 Identities=30% Similarity=0.596 Sum_probs=76.7
Q ss_pred cHHHHHHHHHhhhhhcCcCcccccchhhhcc--CCCCcEEehhhccchhhhhcccCHHHHHHHHhcCCcEEEcC--CeEe
Q 008981 393 EPSLAAMLIHQIDYYFSDANLVKDEFLKSNM--DDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTVVEVQD--DRVR 468 (547)
Q Consensus 393 d~~L~~~I~kQVEYYFSDeNL~kD~FLr~~M--d~qG~VPLs~IasFnRVK~Lt~d~~lI~eALr~S~~LEVsg--dKVR 468 (547)
+++++++|++||||||||+||++|.||+++| |+||||||++|++|+|||+||.|+++|++||+.|+.|||++ ++||
T Consensus 7 ~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~~VR 86 (92)
T 1s29_A 7 SSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLMVR 86 (92)
T ss_dssp CHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSSEEE
T ss_pred CHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCCEEe
Confidence 5689999999999999999999999999999 78999999999999999999999999999999999999985 5899
Q ss_pred eCCcc
Q 008981 469 RRNEW 473 (547)
Q Consensus 469 Rr~~w 473 (547)
|+.++
T Consensus 87 R~~Pl 91 (92)
T 1s29_A 87 RRDPL 91 (92)
T ss_dssp ESSCC
T ss_pred CCCCC
Confidence 99764
No 4
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.60 E-value=3.5e-05 Score=65.43 Aligned_cols=66 Identities=6% Similarity=-0.125 Sum_probs=48.3
Q ss_pred CCCCceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 479 TPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 479 ~~~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
.+...+++...+++...|.++|.++|..+|-..... -++.....++|.+||+|.++|+|+++++.|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~---i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~ 72 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ---MRRTLHKAFKGSIFVVFDSIESAKKFVETP 72 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEE---EECCCTTSCCCEEEEEESSHHHHHHHHTSS
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEE---EEECCCCCCccEEEEEECCHHHHHHHHHcC
Confidence 334445566667889999999999999998422211 122223788999999999999999988643
No 5
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.58 E-value=3.1e-05 Score=65.28 Aligned_cols=60 Identities=8% Similarity=0.005 Sum_probs=46.2
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
.++...+++...|.++|.++|..+++..+.. ++......+|.+||||.++|+|+++|+.|
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i----~~d~~g~~~G~afV~F~~~~~a~~Al~~~ 75 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFSPLNPMRVHI----EIGPDGRVTGEADVEFATHEDAVAAMAKD 75 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSCSCCCSEEEE----EESSSSCEEEEEEEECSSSHHHHHHHTTS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCceEEEE----EECCCCCEeeEEEEEECCHHHHHHHHHhC
Confidence 3455567899999999999999999532211 22235778999999999999999998654
No 6
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.56 E-value=4.2e-05 Score=65.79 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=46.1
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
..++..-+++...|.++|.++|..+|....+..+.-++......+|.+||||.++|+|+++|+.
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~ 80 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKK 80 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGG
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhc
Confidence 3445556789999999999999999852111111112223367899999999999999999864
No 7
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.52 E-value=7.4e-05 Score=63.48 Aligned_cols=62 Identities=18% Similarity=0.094 Sum_probs=46.5
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
.++...+++...|.++|.++|..+|..+.... -++......+|.+||||.++|+|+++|+.|
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~--i~~d~~g~~~G~afV~F~~~~~a~~Al~~~ 77 (114)
T 2cpy_A 16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVH--VLVDNNGQGLGQALVQFKNEDDARKSERLH 77 (114)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEE--ECCCTTSSCSSCEEEECSSHHHHHHHGGGC
T ss_pred cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEE--EEECCCCCcceEEEEEECCHHHHHHHHHhC
Confidence 44555678999999999999999986421111 122235678999999999999999998653
No 8
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.51 E-value=7.7e-05 Score=62.71 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=45.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
.++...+++...|.++|.++|..+|.......+.-++......+|.+||+|.++|+|+++|+.|
T Consensus 12 ~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~ 75 (107)
T 2lmi_A 12 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKH 75 (107)
T ss_dssp CEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhC
Confidence 3455567899999999999999988521111111122223678999999999999999988643
No 9
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.47 E-value=8.9e-05 Score=62.00 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=46.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
.++..-+++...|.++|.++|..+|....... -++......+|.+||||.++|+|+++|+.|
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~--i~~~~~g~~~G~afV~F~~~~~a~~A~~~~ 77 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMT--LPVDFQGRSTGEAFVQFASQEIAEKALKKH 77 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEE--CCBCSSSCBCSEEEEEESSHHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceeEE--EEECCCCCcceEEEEEECCHHHHHHHHHhC
Confidence 44555678999999999999999985322111 122345678999999999999999998754
No 10
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.47 E-value=6.8e-05 Score=67.54 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=46.2
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
.++..-+++...|.++|.++|+.+++..+.+ ++......+|.+||||.++|+|+++|+.|
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i----~~d~~g~srGfaFV~F~~~e~A~~Al~~~ 106 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLNPVRVHI----EIGPDGRVTGEADVEFATHEEAVAAMSKD 106 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCCCSEEEC----CCSSSSCSSCCCEEECSHHHHHHHHTTCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE----EECCCCCCceEEEEEeCCHHHHHHHHhhC
Confidence 3455567899999999999999999532221 22233678999999999999999998654
No 11
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.41 E-value=0.0001 Score=65.60 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=46.1
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
.++..-+++...|.++|.++|+.+++..... .-++......+|.+||||.++|+|+++|+.|
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v--~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~ 104 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGI--TLPVDPEGKITGEAFVQFASQELAEKALGKH 104 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSCEEEEEE--ECCCCSSSSSCSEEEEEESSTTHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCceeeEE--EEEECCCCCCceEEEEEECCHHHHHHHHHHC
Confidence 4455667899999999999999996541111 1122223678999999999999999998754
No 12
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.37 E-value=8.4e-05 Score=64.11 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=45.6
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
.++...+++...|.++|.++|+.+++..+.. ++......+|.+||||.++|||+++|+.|
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i----~~d~~g~~~G~afV~F~~~~~a~~Al~~~ 76 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGLRVDAVHL----LKDHVGRNNGNGLVKFLSPQDTFEALKRN 76 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTSCCCEEEE----CCCTTCCCCSEEEEECSSHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHhccCCeeEEEE----EECCCCCCCeEEEEEECCHHHHHHHHhcC
Confidence 3466667899999999999999995433322 22223668999999999999999998543
No 13
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.37 E-value=8.2e-05 Score=61.21 Aligned_cols=60 Identities=15% Similarity=-0.044 Sum_probs=44.6
Q ss_pred eeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
++...++|...|.++|.++|+.+|.+..... -++ ......+|.+||+|.++|+|+++|+.
T Consensus 3 ~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~--i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 3 IVMLRMLPQAATEDDIRGQLQSHGVQAREVR--LMRNKSSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp EEEEETCCSSCCHHHHHHHHHHHTCCCSBCC--SSSCSSSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeEEEE--EEecCCCCCcCceEEEEecCHHHHHHHHHh
Confidence 4455578999999999999999984222111 122 34567889999999999999998753
No 14
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.31 E-value=0.00014 Score=61.08 Aligned_cols=63 Identities=14% Similarity=-0.036 Sum_probs=46.3
Q ss_pred CceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 482 RISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 482 r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
...++..-+++...|.++|.+.|+.+|.... .++.-++ ......+|.+||+|.++|+|+++++
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v-~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~ 71 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAV-NNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQ 71 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCG-GGEECCCCSSSSSCSSEEEEECSSSHHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccE-EEEEEEecCCCCCCceEeEEEECCHHHHHHHHH
Confidence 3455666678999999999999999983211 1111122 3456789999999999999999874
No 15
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.30 E-value=0.00012 Score=65.60 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=46.5
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
..++..-+++...|.++|.++|..+|..+.+..+.-++......+|.+||||.++|+|+++|+.|
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~ 108 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKD 108 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcC
Confidence 34455667899999999999999998521111111122223678999999999999999988743
No 16
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.26 E-value=0.00015 Score=56.30 Aligned_cols=59 Identities=7% Similarity=-0.088 Sum_probs=43.4
Q ss_pred eecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 487 SGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 487 ~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
...+++...|.++|.++|+.+|...... ..........+|.+||+|.++|+|+++++.|
T Consensus 3 ~v~nLp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~ 61 (75)
T 1iqt_A 3 FVGGLSPDTPEEKIREYFGGFGEVESIE--LPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61 (75)
T ss_dssp EESCCCSSCCHHHHHHHHHHHSCCSEEC--CCCSCCCSSSCCCEEEECSSSHHHHHHHTTS
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEE--EEecCCCCCcCCEEEEEECCHHHHHHHHHhC
Confidence 3446788999999999999998421111 1111344678999999999999999998754
No 17
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.25 E-value=9.9e-05 Score=65.10 Aligned_cols=63 Identities=13% Similarity=-0.010 Sum_probs=45.3
Q ss_pred eeeecCCCCCCChhhhhhhcccccccc-cccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKE-GAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~-~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
+|...+++...|.++|.++|+.++... .+..+.-++......+|.+||||.++|+|+++|+.|
T Consensus 25 ~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~ 88 (123)
T 2dha_A 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKH 88 (123)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhC
Confidence 455567899999999999999997421 001111112234668999999999999999998754
No 18
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.00024 Score=61.33 Aligned_cols=98 Identities=7% Similarity=-0.053 Sum_probs=64.5
Q ss_pred cCHHHHHHHHhcCCcEEEcCCeEeeCCcccccCCCCCCceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCC
Q 008981 445 SNIQLILDSLRTSTVVEVQDDRVRRRNEWMKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNA 523 (547)
Q Consensus 445 ~d~~lI~eALr~S~~LEVsgdKVRRr~~w~kwvp~~~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~ 523 (547)
.+.+....||+...-.++.+..|+-.....+.........++...+++...|.++|.++|+.+|...... -++ ...
T Consensus 49 ~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~---i~~~~~~ 125 (166)
T 3md3_A 49 HQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH---VMWDMQT 125 (166)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEE---EEECTTT
T ss_pred CCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEE---EEecCCC
Confidence 3677777788776667777765443211111112222344566667899999999999999998422211 112 245
Q ss_pred cccCCcccEEcCChhhhhcCCC
Q 008981 524 NCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 524 k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
...+|.+||+|.++|+|+++++
T Consensus 126 ~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 126 GSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp CCEEEEEEEEESCHHHHHHHHH
T ss_pred CCcceEEEEEeCCHHHHHHHHH
Confidence 6678999999999999999874
No 19
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.20 E-value=0.00014 Score=58.64 Aligned_cols=59 Identities=8% Similarity=-0.070 Sum_probs=44.5
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+.+..... ++......+|.+||+|.++|+|+++|+
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i----~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRI----VRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTSCCSEEEE----EECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhCCceEEEE----EECCCCCCceEEEEEECCHHHHHHHHH
Confidence 34455567899999999999999994332221 223456678999999999999999875
No 20
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.19 E-value=0.00021 Score=59.08 Aligned_cols=60 Identities=7% Similarity=-0.061 Sum_probs=45.6
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..++++..... ........+|.+||+|.++|+|+++|+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~---~~~~~g~~~g~afV~f~~~~~a~~A~~ 74 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLV---RDKDTDKFKGFCYVEFDEVDSLKEALT 74 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEE---ECSSSCSEEEEEEEEESSHHHHHHHGG
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEe---ecCCCCccceEEEEEECCHHHHHHHHh
Confidence 345556678999999999999999975433221 113346789999999999999999873
No 21
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.15 E-value=0.00027 Score=54.92 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=41.8
Q ss_pred cCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCC
Q 008981 489 LSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 489 ~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
.+++...|.++|.++|+.+|...... ..........+|.+||+|.++|+|+++++.
T Consensus 5 ~nlp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 60 (75)
T 2mss_A 5 GGLSVNTTVEDVKHYFEQFGKVDDAM--LMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60 (75)
T ss_dssp ECCCSSCCHHHHHHHHHTTSCCSEEC--CCBCSSSTTSCBEEEEECSCHHHHHHHHSS
T ss_pred ecCCCCCCHHHHHHHHHhcCCEEEEE--EEecCCCCCcCcEEEEEECCHHHHHHHHHC
Confidence 46788999999999999998422111 111123567899999999999999998764
No 22
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.15 E-value=0.00056 Score=60.36 Aligned_cols=92 Identities=12% Similarity=-0.036 Sum_probs=62.3
Q ss_pred CHHHHHHHHhcCCcEEEcCCeEeeCCcccccCCCCCCceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcc
Q 008981 446 NIQLILDSLRTSTVVEVQDDRVRRRNEWMKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANC 525 (547)
Q Consensus 446 d~~lI~eALr~S~~LEVsgdKVRRr~~w~kwvp~~~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~ 525 (547)
+.+....||+ ..-.++.+.+|+-...-.+-........++...+++...|.++|.++|+.+|-... + .....
T Consensus 63 ~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~------~-~~~~~ 134 (175)
T 1fje_B 63 SAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRL------V-SQDGK 134 (175)
T ss_dssp SHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEE------E-CSSSS
T ss_pred CHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEE------e-cCCCC
Confidence 5677778884 66677887765532111111112223345666678899999999999999973211 1 34556
Q ss_pred cCCcccEEcCChhhhhcCCC
Q 008981 526 HCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 526 f~GsvfVEFsSeEeAkk~~~ 545 (547)
.+|.+||+|.++|+|+++++
T Consensus 135 ~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHH
T ss_pred CceEEEEEECCHHHHHHHHH
Confidence 78999999999999999875
No 23
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.00035 Score=57.80 Aligned_cols=60 Identities=7% Similarity=-0.100 Sum_probs=44.5
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEP 544 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~ 544 (547)
..++...+++...|.++|.++|..+|++.+... .-+.+....+|.+||+|.++|+|+++|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~--~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLP--REPSNPERLKGFGYAEFEDLDSLLSAL 74 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSCEEEEECC--BCSSCTTSBCSCEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCCceEEEEe--cCCCCCCCcCeEEEEEECCHHHHHHHH
Confidence 345666678999999999999999984332221 111112678999999999999999987
No 24
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.00022 Score=58.44 Aligned_cols=61 Identities=11% Similarity=-0.025 Sum_probs=45.2
Q ss_pred CceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 482 RISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 482 r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
...++...+++...|.++|.++|+.+|...... -++ ......+|.+||+|.++|+|+++++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVV---MIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEE---ECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE---EEeCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 344566667889999999999999998321111 112 2356789999999999999999874
No 25
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.12 E-value=0.00025 Score=58.76 Aligned_cols=61 Identities=7% Similarity=-0.103 Sum_probs=44.7
Q ss_pred CceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCC
Q 008981 482 RISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEP 544 (547)
Q Consensus 482 r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~ 544 (547)
...++...+++...|.++|.++|+.+|+..... ..-+......+|.+||||.++|+|++++
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i--~~~~~~~g~~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLNISAVRL--PREPSNPERLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSCEEEEEC--SCCTTTTCCCCSCEEEEECCHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EecCCcCCccCeEEEEEECCHHHHHHHH
Confidence 345566667889999999999999998332222 1111135778999999999999999986
No 26
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.12 E-value=0.00025 Score=60.87 Aligned_cols=61 Identities=8% Similarity=-0.019 Sum_probs=45.9
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
.++..-+++...|.++|.++|..+|...... .-+.......+|.+||||.++|+|+++|+.
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~--~~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 86 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSI--YIAYGPNGKATGEGFVEFRNEADYKAALCR 86 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTC--EEEECTTSSEEEEEEEEBSSSHHHHHHHTS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceE--EEEECCCCCCCeEEEEEECCHHHHHHHHHh
Confidence 4455567899999999999999998532211 112234567799999999999999998864
No 27
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.11 E-value=0.00034 Score=59.01 Aligned_cols=63 Identities=11% Similarity=-0.072 Sum_probs=46.1
Q ss_pred CceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCC
Q 008981 482 RISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 482 r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
...++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAV--VITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEE--ESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEE--EEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 344566667889999999999999998421111 111123567889999999999999998864
No 28
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.11 E-value=0.00017 Score=57.56 Aligned_cols=63 Identities=8% Similarity=-0.111 Sum_probs=45.9
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
..++...+++...|.++|.++|..+|-..... ..........+|.+||+|.++|+|+++++.|
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT--IKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTTSCEEEEE--EEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE--EeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 34555567889999999999999998322111 1111345678999999999999999988653
No 29
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.09 E-value=0.00019 Score=63.77 Aligned_cols=61 Identities=10% Similarity=-0.094 Sum_probs=44.8
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..+|...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++++
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKII--MGLDKMKKTACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--EEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 34555667889999999999999998422111 11113356788999999999999999875
No 30
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.08 E-value=0.0003 Score=58.72 Aligned_cols=58 Identities=9% Similarity=-0.119 Sum_probs=43.2
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|..... .+.. .+..+|.+||+|.++|+|+++++
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~----~i~~-~~~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDI----DLKN-RRGGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEE----EECC-SSSSSCCEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE----EEEE-CCCCCcEEEEEECCHHHHHHHHH
Confidence 3455556788999999999999999842221 1222 23478999999999999999873
No 31
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.07 E-value=0.00029 Score=58.06 Aligned_cols=59 Identities=8% Similarity=-0.134 Sum_probs=43.6
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|-.... .+..+....+|.+||+|.++|+|+++++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v----~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDV----EIIFNERGSKGFGFVTFENSADADRARE 73 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEE----EEECCTTTTCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE----EEEecCCCCcEEEEEEECCHHHHHHHHH
Confidence 3455556788999999999999999832211 1222223489999999999999999875
No 32
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.07 E-value=0.00054 Score=61.22 Aligned_cols=99 Identities=9% Similarity=-0.077 Sum_probs=61.7
Q ss_pred cCHHHHHHHHhcCCcEEEcCCeEe--eCCcccccC-C-CCCCceeeeecCCCCCCChhhhhhhccccccccccccccccc
Q 008981 445 SNIQLILDSLRTSTVVEVQDDRVR--RRNEWMKWI-A-TPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT 520 (547)
Q Consensus 445 ~d~~lI~eALr~S~~LEVsgdKVR--Rr~~w~kwv-p-~~~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R 520 (547)
.+.+....||+. ...++.+..|+ +........ + ......++...+++...|.++|.++|..+|...... -++
T Consensus 63 ~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~---i~~ 138 (196)
T 1l3k_A 63 ATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE---IMT 138 (196)
T ss_dssp SSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEE---EEE
T ss_pred CCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEE---Eee
Confidence 357777788876 55667775443 222111111 1 111224455567889999999999999998422111 112
Q ss_pred -CCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 521 -GNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 521 -~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
......+|.+||+|.+.|+|+++|++|
T Consensus 139 ~~~~g~~~g~afV~F~~~~~A~~A~~~~ 166 (196)
T 1l3k_A 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQK 166 (196)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHCS
T ss_pred cCCCCCccceEEEEECCHHHHHHHHHhC
Confidence 235667899999999999999988653
No 33
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.05 E-value=0.00038 Score=57.18 Aligned_cols=56 Identities=16% Similarity=-0.030 Sum_probs=43.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..++-.. -++......+|.+||||.++|+|+++++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~------~~~~~~g~~~g~afV~f~~~~~A~~A~~ 71 (101)
T 2fc9_A 16 KTLVLSNLSYSATEETLQEVFEKATFIK------VPQNQNGKSKGYAFIEFASFEDAKEALN 71 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHHCSSCSEEE------CCBCSSSCBCSEEEEECSSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCEEE------EEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 4455567889999999999999997421 1223456789999999999999999875
No 34
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.04 E-value=0.00034 Score=57.69 Aligned_cols=62 Identities=11% Similarity=-0.076 Sum_probs=45.3
Q ss_pred CceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 482 RISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 482 r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
...++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVY--IPREPHTKAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE--CCBCSSSCSBCSCEEEEESSSSHHHHHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--EEeCCCCCCCCeEEEEEECCHHHHHHHHH
Confidence 344566667899999999999999998422111 11112346789999999999999999875
No 35
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.04 E-value=0.00033 Score=59.11 Aligned_cols=59 Identities=8% Similarity=-0.145 Sum_probs=43.9
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|+.+|-... ..+..+....+|.+||+|.++|+|+++++
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~----v~i~~~~~~~kg~afV~f~~~~~A~~Ai~ 87 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILD----VEIIFNERGSKGFGFVTFENSADADRARE 87 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSC----EEECCBTTBCTTEEEEECCCSHHHHHHHH
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEE----EEEEECCCCCceEEEEEECCHHHHHHHHH
Confidence 345556678899999999999999983221 11222233489999999999999999864
No 36
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.00042 Score=57.54 Aligned_cols=63 Identities=10% Similarity=-0.168 Sum_probs=44.6
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
.++...+++...|.++|.++|..+|..................+|.+||||.++|+|+++++.
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 445556788999999999999999731111111111133457889999999999999998764
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.02 E-value=0.00032 Score=57.91 Aligned_cols=61 Identities=10% Similarity=-0.072 Sum_probs=44.7
Q ss_pred ceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|-..... . ... ......+|.+||+|.++|+|+++++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~-i-~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 76 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVR-L-PKKMTGTGAHRGFGFVDFITKQDAKKAFN 76 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE-C-CCCCSSSCSSCSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEE-E-ecCCCCCCCcCceEEEEECCHHHHHHHHH
Confidence 44555667899999999999999998321111 1 111 2366789999999999999998874
No 38
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=0.00039 Score=58.61 Aligned_cols=61 Identities=8% Similarity=-0.120 Sum_probs=45.6
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
.++...+++...|.++|.++|..+|...... -++ ......+|.+||+|.++|+|+++|+.|
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~ 89 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCV---VMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 89 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEE---EECCTTTSSCCSEEEEECSSHHHHHHHHTSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE---EEECCCCCCcCceEEEEeCCHHHHHHHHHhC
Confidence 4455567889999999999999998321111 122 244678999999999999999998753
No 39
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.01 E-value=0.00016 Score=58.66 Aligned_cols=60 Identities=8% Similarity=-0.213 Sum_probs=41.5
Q ss_pred eeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 486 ESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 486 V~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+...+++...|.++|.++|+.+|...+..-...........+|.+||+|.++|+|+++++
T Consensus 4 l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~ 63 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 63 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHH
Confidence 344467889999999999999983221111111113356778999999999999998863
No 40
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.00 E-value=0.00019 Score=59.42 Aligned_cols=60 Identities=7% Similarity=-0.201 Sum_probs=44.4
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++|+
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~--i~~~~~~g~~~g~afV~f~~~~~a~~a~~ 76 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCV--IMKDKTTNQSRGFGFVKFKDPNCVGTVLA 76 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTSCEEEEE--EEECSSSCCEEEEEEEEESSTTHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EeeCCCCCCcceEEEEEECCHHHHHHHHH
Confidence 4455567889999999999999998322111 11112456788999999999999999875
No 41
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.00 E-value=0.00085 Score=53.86 Aligned_cols=56 Identities=11% Similarity=-0.139 Sum_probs=41.4
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
.++...+++...|.++|.++|+.+|...... +.. ..+|.+||+|.++|+|++++.+
T Consensus 6 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~----i~~---~~~g~afV~f~~~~~a~~~~~~ 61 (88)
T 1wf0_A 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVF----IPK---PFRAFAFVTFADDQIAQSLCGE 61 (88)
T ss_dssp CEEEEESCCSSSCHHHHHHHSTTTSCCCEEE----CCS---SCCSCCEEECSCHHHHHHTTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCeeEEE----Eec---CCCCEEEEEECCHHHHHHHhcC
Confidence 3455567899999999999999998421111 111 2789999999999999986543
No 42
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.99 E-value=0.0005 Score=57.59 Aligned_cols=64 Identities=14% Similarity=-0.071 Sum_probs=46.2
Q ss_pred CceeeeecCCCCCCChhhhhhhccccccccccc-----cccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 482 RISTESGLSSPAGSSVDVLAPSFQNITVKEGAV-----NQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 482 r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~-----~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
...++...+++...|.++|.++|..+|...... .+.-.+ ......+|.+||+|.++|+|+++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 344566667889999999999999998543100 011111 2456789999999999999999875
No 43
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.99 E-value=0.00042 Score=60.28 Aligned_cols=95 Identities=12% Similarity=-0.049 Sum_probs=62.4
Q ss_pred CHHHHHHHHhcCCcEEEcCCeEeeCCcccccCCCCCCceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCc
Q 008981 446 NIQLILDSLRTSTVVEVQDDRVRRRNEWMKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNAN 524 (547)
Q Consensus 446 d~~lI~eALr~S~~LEVsgdKVRRr~~w~kwvp~~~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k 524 (547)
+.+....||+...-.++.+.+|+-. |.+-........++...+++...|.++|.++|+.+|...... -.+ ....
T Consensus 54 ~~~~A~~a~~~l~~~~~~g~~l~v~--~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~---i~~~~~~~ 128 (168)
T 1b7f_A 54 SEMDSQRAIKVLNGITVRNKRLKVS--YARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKN---ILRDKLTG 128 (168)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEE--ECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEE---EEECTTTC
T ss_pred CHHHHHHHHHhcCCCEeCCcEEEEE--ecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEE---EEEcCCCC
Confidence 5677777777666677777655432 211111222334555667889999999999999998322111 122 2245
Q ss_pred ccCCcccEEcCChhhhhcCCC
Q 008981 525 CHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 525 ~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..+|.+||+|.++|+|+++++
T Consensus 129 ~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 129 RPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp CEEEEEEEEESSHHHHHHHHH
T ss_pred CcceEEEEEECCHHHHHHHHH
Confidence 678999999999999999864
No 44
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.0004 Score=58.93 Aligned_cols=59 Identities=10% Similarity=-0.090 Sum_probs=43.5
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCC---cccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNA---NCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~---k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++..-+++...|.++|.++|+.+|... .. ....... ...+|.+||||.++|+|+++++
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~--~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~ 70 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRRFGPLV-VD--WPHKAESKSYFPPKGYAFLLFQEESSVQALID 70 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTTTCCCC-EE--CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHH
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEE-EE--EeecCCCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 3455557889999999999999998433 11 1111222 4789999999999999998764
No 45
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.98 E-value=0.00043 Score=57.08 Aligned_cols=60 Identities=13% Similarity=-0.160 Sum_probs=44.3
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|+.+|...... ..........+|.+||+|.++|+|+++++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 75 (105)
T 1x5u_A 16 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTH--MPKDRVTGQHQGYGFVEFLSEEDADYAIK 75 (105)
T ss_dssp TEEEEECCCTTCCHHHHHHHHHTTSCEEEEE--CCBCSSSCSBCSCEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EEecCCCCcCCcEEEEEECCHHHHHHHHH
Confidence 4455567889999999999999998321111 11112356789999999999999999875
No 46
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.97 E-value=0.00036 Score=59.05 Aligned_cols=62 Identities=5% Similarity=-0.224 Sum_probs=45.0
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
..++...+++...|.++|.++|+.+|-..... ..........+|.+||+|.++|+|+++++.
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~--i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~ 86 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECL--VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 86 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEE--ECCCTTTCCCTTCEEEEESSHHHHHHHHHS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEE--EEECCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 34455567889999999999999998422211 111123467899999999999999998754
No 47
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.95 E-value=0.00031 Score=54.53 Aligned_cols=58 Identities=5% Similarity=-0.174 Sum_probs=42.8
Q ss_pred eeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCCC
Q 008981 486 ESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 486 V~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
+...+++...|.++|.++|+.+|...... -.+ ......+|.+||+|.++|+|++++++
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 61 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQFGEVKECL---VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTTSCCCCEE---EECCCCSSSCSSEEEECCCCTTHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEE---EecCCCCCCcCceEEEEEcCHHHHHHHHHh
Confidence 34456788999999999999998321111 112 23467899999999999999998754
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.95 E-value=0.00031 Score=57.96 Aligned_cols=59 Identities=7% Similarity=-0.115 Sum_probs=43.0
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|..... .+..+....+|.+||+|.++|+|+++++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v----~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSC----KMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEE----EEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEE----EEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 3455666788999999999999999842211 1112222358999999999999998875
No 49
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.94 E-value=0.0014 Score=62.51 Aligned_cols=55 Identities=13% Similarity=-0.046 Sum_probs=40.6
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|+.+|-..... +-.+. +|.+||||.++|+|+++++
T Consensus 208 ~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~----~~~~~---~g~afV~f~~~~~A~~A~~ 262 (282)
T 3pgw_A 208 HILFLTNLPEETNELMLSMLFNQFPGFKEVR----LVPGR---HDIAFVEFDNEVQAGAARD 262 (282)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhcCCeEEEE----EecCC---CcEEEEEeCCHHHHHHHHH
Confidence 3456667888999999999999997322111 11111 5899999999999999875
No 50
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.93 E-value=0.00043 Score=59.79 Aligned_cols=95 Identities=11% Similarity=-0.053 Sum_probs=61.1
Q ss_pred CHHHHHHHHhcCCcEEEcCCeEeeCCcccccCCCCCCceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCc
Q 008981 446 NIQLILDSLRTSTVVEVQDDRVRRRNEWMKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNAN 524 (547)
Q Consensus 446 d~~lI~eALr~S~~LEVsgdKVRRr~~w~kwvp~~~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k 524 (547)
+.+....||+...-.++.+.+|+-. |.+-.........+...+++...|.++|.++|+.+|...... -.+ ....
T Consensus 53 ~~~~A~~a~~~l~~~~~~g~~l~v~--~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~---i~~~~~~g 127 (167)
T 1fxl_A 53 DPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSR---ILVDQVTG 127 (167)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEE--ECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE---EEECTTTC
T ss_pred CHHHHHHHHHHcCCCccCCceEEEE--ecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEE---EEecCCCC
Confidence 5677777777656677777654422 111111112233455567888999999999999998322111 112 2345
Q ss_pred ccCCcccEEcCChhhhhcCCC
Q 008981 525 CHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 525 ~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..+|.+||+|.++|+|+++++
T Consensus 128 ~~~g~afV~f~~~~~A~~A~~ 148 (167)
T 1fxl_A 128 VSRGVGFIRFDKRIEAEEAIK 148 (167)
T ss_dssp CEEEEEEEEESSHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHH
Confidence 678999999999999999864
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.93 E-value=0.0004 Score=59.50 Aligned_cols=59 Identities=7% Similarity=-0.120 Sum_probs=44.0
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|+.+|..... .-.+......+|.+||+|.++|+|+++++
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v---~i~~~~~g~~~g~afV~F~~~~~A~~Ai~ 66 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEV---LLIKDRTSKSRGFAFITFENPADAKNAAK 66 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHTSSCCSEE---EEECSTTTTCCCEEEEECSSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEE---EEEECCCCCcccEEEEEECCHHHHHHHHH
Confidence 445556788999999999999999842111 11222256788999999999999998864
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.91 E-value=0.00042 Score=55.24 Aligned_cols=60 Identities=8% Similarity=-0.123 Sum_probs=44.0
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|++++.
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 66 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVT--ILCDKFSGHPKGFAYIEFSDKESVRTSLA 66 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEE--EEESCSSSSCCEEEEEEESSTHHHHHHGG
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE--EEecCCCCCcceEEEEEECCHHHHHHHHh
Confidence 3455567889999999999999998422111 11113466789999999999999999873
No 53
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.91 E-value=0.00032 Score=56.75 Aligned_cols=60 Identities=20% Similarity=0.084 Sum_probs=44.6
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... ..........+|.+||||.++|+|+++++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~--~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 75 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSV--CLKYNEKGMPTGEAMVAFESRDEATAAVI 75 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCC--EEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceE--EEEeCCCCCEeeEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998522111 11113456788999999999999999875
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.00057 Score=55.11 Aligned_cols=59 Identities=10% Similarity=-0.125 Sum_probs=43.3
Q ss_pred eeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++...|.++|.++|+.+|...... ..........+|.+||+|.++|+|+++++
T Consensus 18 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 18 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVT--IMKDKDTRKSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp SEEEESCCTTSCHHHHHHHTTTTSCEEEEE--ECCCSSSCCCTTCEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEE--EEeCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 445557889999999999999998422111 11113346788999999999999999874
No 55
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.91 E-value=0.0005 Score=57.11 Aligned_cols=61 Identities=11% Similarity=-0.127 Sum_probs=44.2
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|-..... ..........+|.+||+|.++|+|+++++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 75 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVR--VVLHPDTEHSKGCAFAQFMTQEAAQKCLA 75 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE--CCBCSSSCCBCSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE--EEecCCCCCCccEEEEEECCHHHHHHHHH
Confidence 34455567889999999999999998321111 11112346789999999999999998874
No 56
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.91 E-value=0.00036 Score=57.50 Aligned_cols=61 Identities=10% Similarity=-0.165 Sum_probs=44.6
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
.++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++|++
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 16 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQ--VKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCEEEEE--EEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCeEEEE--EEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 3455556889999999999999998422111 111123467889999999999999998864
No 57
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.90 E-value=0.00063 Score=55.54 Aligned_cols=61 Identities=10% Similarity=-0.204 Sum_probs=44.6
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELH--YPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEE--CCCCTTTCCCCSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE--EEecCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 34555667889999999999999998321111 11112356788999999999999999873
No 58
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.89 E-value=0.00045 Score=56.70 Aligned_cols=63 Identities=11% Similarity=-0.004 Sum_probs=45.0
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccc-----ccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVN-----QRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~-----~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|+.+|....... ..-++ ......+|.+||+|.++|+|+++++
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 344555678899999999999999985332000 11111 2456788999999999999998874
No 59
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.88 E-value=0.00048 Score=55.78 Aligned_cols=59 Identities=8% Similarity=-0.146 Sum_probs=44.1
Q ss_pred eeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++...|.++|.++|+.+|...... .-++ ......+|.+||+|.++|+|+++++
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~--~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 7 GIFIGNLDPEIDEKLLYDTFSAFGVILQTP--KIMRDPDTGNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCBSSCC--EECCCTTTCSCCSEEEEEBSSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEE--EEEEcCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 455557889999999999999998432220 1112 2456788999999999999999875
No 60
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.88 E-value=0.00052 Score=56.31 Aligned_cols=60 Identities=12% Similarity=-0.118 Sum_probs=43.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++++
T Consensus 13 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2cqb_A 13 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ--IPLDYETEKHRGFAFVEFELAEDAAAAID 72 (102)
T ss_dssp SCEEEESCCSSCCHHHHHHHHTTTSCCCCEE--CCCCSSSCCCSSEEEECCSSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHhhccCCEEEEE--EEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 3445556788999999999999998322211 11112456789999999999999999874
No 61
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.88 E-value=0.00039 Score=58.27 Aligned_cols=60 Identities=10% Similarity=-0.097 Sum_probs=44.3
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... ..++......+|.+||+|.++|+|+++++
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~--~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 85 (115)
T 2cpx_A 26 KVLYLKNLSPRVTERDLVSLFARFQEKKGPP--IQFRMMTGRMRGQAFITFPNKEIAWQALH 85 (115)
T ss_dssp SEEEEECCCTTCCHHHHHHHTHHHHHSSSSC--CEEEEECSSSCSEEEEECSSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCccceE--EEEEcCCCccceEEEEEECCHHHHHHHHH
Confidence 4455567889999999999999998432111 12222256778999999999999998874
No 62
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=96.87 E-value=0.00043 Score=54.91 Aligned_cols=55 Identities=9% Similarity=-0.069 Sum_probs=40.1
Q ss_pred ecCCCCCC------ChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCC
Q 008981 488 GLSSPAGS------SVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 488 g~~~p~~~------T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
..+++... |.++|.++|..+|...... +.......+|.+||+|.++|+|++++++
T Consensus 6 V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~----i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 6 VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDF----YPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp EESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEE----CCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred EeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEE----ecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 33456666 6799999999998422211 2234457889999999999999998763
No 63
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.86 E-value=0.00066 Score=57.90 Aligned_cols=61 Identities=7% Similarity=-0.171 Sum_probs=45.4
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++++
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIH--LNLDRRTGYLKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE--CCBCTTTSSBCSCEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 44566667889999999999999998322111 11113467789999999999999999874
No 64
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.86 E-value=0.00017 Score=67.12 Aligned_cols=94 Identities=9% Similarity=-0.115 Sum_probs=60.0
Q ss_pred CHHHHHHHHhcCCcEEEcCCeEeeCC--cccccCCCCCCceeeeecCCCCCCChhhhhhhcccccccccccccccccCCC
Q 008981 446 NIQLILDSLRTSTVVEVQDDRVRRRN--EWMKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNA 523 (547)
Q Consensus 446 d~~lI~eALr~S~~LEVsgdKVRRr~--~w~kwvp~~~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~ 523 (547)
+.+....||+......+.+..||... ........ ....+...+++...|.++|.++|..+|-..... +-.++
T Consensus 66 ~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~--~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~----i~~d~ 139 (213)
T 4f02_A 66 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKS--GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK----VVCDE 139 (213)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHH--CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEE----EEEET
T ss_pred CHHHHHHHHHHhhhhhcCCccccccccccccccccc--ccccceECCcccccHHHHHHHHHhhcCCeEEEE----eeccC
Confidence 56777778877666667766555321 11111111 122344557889999999999999998422211 11223
Q ss_pred cccCCcccEEcCChhhhhcCCC
Q 008981 524 NCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 524 k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
...+|.+||+|.++|+|+++++
T Consensus 140 ~~~~g~~fV~f~~~~~a~~Ai~ 161 (213)
T 4f02_A 140 NGSKGYGFVHFETQEAAERAIE 161 (213)
T ss_dssp TEEEEEEEEEESSHHHHHHHHH
T ss_pred CCCceEEEEEeCCHHHHHHHHH
Confidence 3468999999999999999874
No 65
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.85 E-value=0.00049 Score=58.03 Aligned_cols=61 Identities=10% Similarity=-0.167 Sum_probs=44.9
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|...... ..........+|.+||||.++|+|+++++
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~--i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 100 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAK--VFIDKQTSLSKCFGFVSFDNPDSAQVAIK 100 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEE--ECCCSSSSCCCCEEEEEEESSHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--EEeCCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 34566667889999999999999998322111 11113456789999999999999998874
No 66
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.84 E-value=0.00049 Score=56.06 Aligned_cols=61 Identities=20% Similarity=0.066 Sum_probs=45.0
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|+++|..+|...... ..........+|.+||||.++|+|+++++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~--~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 75 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSV--CLKYNEKGMPTGEAMVAFESRDEATAAVI 75 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTC--EEEECSSSCEEEEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceE--EEEECCCCCeeeEEEEEECCHHHHHHHHH
Confidence 34456667899999999999999998532111 11113455678999999999999999873
No 67
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.84 E-value=0.00048 Score=56.54 Aligned_cols=57 Identities=12% Similarity=-0.045 Sum_probs=42.3
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+...... ........+|.+||+|.++|+|+++++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~-----~~~~~~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2fc8_A 16 KTLFVKGLSEDTTEETLKESFDGSVRARIV-----TDRETGSSKGFGFVDFNSEEDAKAAKE 72 (102)
T ss_dssp SSEEEECCCTTCCHHHHHHTSTTCSEEEEE-----ECSSSCSEEEEEEEECSSHHHHHHHHH
T ss_pred CEEEEeCCCCccCHHHHHHHhcCCeEEEEE-----ecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 345555788999999999999987421111 112356788999999999999999875
No 68
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.83 E-value=0.00054 Score=56.23 Aligned_cols=60 Identities=7% Similarity=-0.146 Sum_probs=43.9
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... ..........+|.+||||.++|+|+++++
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVV--VVKDRETQRSRGFGFVTFENIDDAKDAMM 72 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHHSCCCEEE--ECCCSSSCSCCSEEEEECSSHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEE--EEeCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998421111 11112356688999999999999999874
No 69
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.83 E-value=0.00052 Score=57.68 Aligned_cols=60 Identities=10% Similarity=-0.175 Sum_probs=44.4
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEP 544 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~ 544 (547)
..++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~g~~~g~afV~f~~~~~a~~A~ 84 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVR--IISDRNSRRSKGIAYVEFCEIQSVPLAI 84 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEE--ECCSCCSSSCCCCEEEEESCGGGHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEE--EEecCCCCccCcEEEEEeCcHHHHHHHH
Confidence 45566667899999999999999998321111 1111234678999999999999999887
No 70
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.82 E-value=0.00072 Score=53.67 Aligned_cols=60 Identities=13% Similarity=-0.129 Sum_probs=43.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|+.+|-..... ..........+|.+||+|.++|+|+++++
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~--i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTK--AILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTSTTTSCEEEEE--EECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3455557889999999999999998322111 11112456789999999999999998864
No 71
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.82 E-value=0.00054 Score=55.39 Aligned_cols=59 Identities=14% Similarity=-0.071 Sum_probs=43.9
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|+.+|...... -.+ ......+|.+||+|.++|+|+++++
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFEPFGKIDNIV---LMKDSDTGRSKGYGFITFSDSECARRALE 65 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEE---EECCSSSCCCCSEEEEEESCHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE---EeecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998321111 112 2356789999999999999999875
No 72
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.81 E-value=0.00036 Score=55.38 Aligned_cols=61 Identities=8% Similarity=-0.159 Sum_probs=42.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... ...-+.+....+|.+||+|.++|+|+++++
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~-i~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMID-MPVERMHPHLSKGYAYVEFENPDEAEKALK 65 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCEEEEE-CCEETTEEEEECSEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE-EEeCCCCCCCCCcEEEEEEecHHHHHHHHH
Confidence 3455567889999999999999998322111 111111223489999999999999998865
No 73
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.81 E-value=0.00039 Score=55.93 Aligned_cols=58 Identities=10% Similarity=-0.153 Sum_probs=43.7
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... +..+....+|.+||+|.++|+|+++++
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~----i~~~~g~~~g~afV~f~~~~~a~~a~~ 66 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYAD----IKMENGKSKGCGVVKFESPEVAERACR 66 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCEEEEE----EEESSSCEEEEEEEEESSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE----EEccCCCcceEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998322211 112456678999999999999998864
No 74
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.81 E-value=0.00051 Score=57.72 Aligned_cols=60 Identities=5% Similarity=-0.187 Sum_probs=45.1
Q ss_pred ceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|...... -++ ......+|.+||+|.++|+|+++++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 75 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDAR---VVKDMATGKSKGYGFVSFFNKWDAENAIQ 75 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE---EEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 44566667899999999999999998422111 122 2367789999999999999999874
No 75
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.81 E-value=0.00065 Score=56.11 Aligned_cols=60 Identities=13% Similarity=-0.076 Sum_probs=44.4
Q ss_pred ceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|+.+|-..... -++ ......+|.+||+|.++|+|+++++
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT---VLKDRFTGMHKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEE---CCCCSSSCSCCSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE---EEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 34555667899999999999999998321111 112 2346788999999999999998874
No 76
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.80 E-value=0.00041 Score=58.08 Aligned_cols=57 Identities=18% Similarity=-0.021 Sum_probs=43.0
Q ss_pred eeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 486 ESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 486 V~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+...+++...|.++|.++|+.+|-..... -++ ......+|.+||+|.++|+|+++++
T Consensus 22 lfV~nLp~~~te~~L~~~F~~~G~I~~v~---i~~d~~tg~~kG~afV~f~~~~~A~~Ai~ 79 (99)
T 4fxv_A 22 LIVNYLPQNMTQDELRSLFSSIGEVESAK---LIRDKVAGHSLGYGFVNYVTAKDAERAIN 79 (99)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEE---EEECSSSCCEEEEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEeE---eeecCCCCcccccEEEEECCHHHHHHHHH
Confidence 55557899999999999999998322111 112 3456788999999999999998864
No 77
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.79 E-value=0.00043 Score=56.76 Aligned_cols=59 Identities=12% Similarity=-0.103 Sum_probs=43.5
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... -.+......+|.+||+|.++|+|+++++
T Consensus 18 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~---i~~~~~g~~~g~afV~f~~~~~a~~A~~ 76 (100)
T 2do4_A 18 HKLFISGLPFSCTKEELEEICKAHGTVKDLR---LVTNRAGKPKGLAYVEYENESQASQAVM 76 (100)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEE---EEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE---EEECCCCCEEeEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998321111 1112256678999999999999999874
No 78
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.78 E-value=0.00091 Score=55.73 Aligned_cols=61 Identities=10% Similarity=-0.130 Sum_probs=44.9
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|-..... ..........+|.+||+|.++|+|+++++
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIH--LNLDRRTGFSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--CCBCTTTSSBCSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--EEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 34566667889999999999999998421111 11112456789999999999999998875
No 79
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.78 E-value=0.00041 Score=57.20 Aligned_cols=58 Identities=16% Similarity=-0.033 Sum_probs=43.6
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... -++. ....+|.+||+|.++|+|+++++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~---i~~~-~g~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2d9p_A 16 VNLYVKNLDDGIDDERLRKAFSPFGTITSAK---VMME-GGRSKGFGFVCFSSPEEATKAVT 73 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHTTTTTSCEEEEE---EEEC-SSSEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE---EEcC-CCCcCEEEEEEECCHHHHHHHHH
Confidence 3455557889999999999999998422111 1112 56788999999999999998875
No 80
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.78 E-value=0.00055 Score=59.61 Aligned_cols=94 Identities=4% Similarity=-0.117 Sum_probs=58.8
Q ss_pred CHHHHHHHHhcCCcEEEcCCeEeeCCcccccCCCCCCceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCc
Q 008981 446 NIQLILDSLRTSTVVEVQDDRVRRRNEWMKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNAN 524 (547)
Q Consensus 446 d~~lI~eALr~S~~LEVsgdKVRRr~~w~kwvp~~~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k 524 (547)
+.+....||+. ..++++..|+-.....+ .......++...+++...|.++|.++|+.+|...... -.+ ....
T Consensus 54 ~~~~a~~A~~~--~~~~~g~~i~v~~~~~~--~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~---i~~~~~~g 126 (167)
T 2cjk_A 54 KPSSVDEVVKT--QHILDGKVIDPKRAIPR--DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQ---LMLDKDTG 126 (167)
T ss_dssp STHHHHHHHHS--CCEETTEECCCEECCCH--HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEE---CCCSSSSS
T ss_pred cHHHHHHHHhc--ccccCCeEcccccccch--hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEE---EEEcCCCC
Confidence 45666777875 34667655442211111 0011123444556788999999999999998321111 112 2356
Q ss_pred ccCCcccEEcCChhhhhcCCCC
Q 008981 525 CHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 525 ~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
..+|.+||+|.++|+|+++++.
T Consensus 127 ~~~g~afV~f~~~~~a~~A~~~ 148 (167)
T 2cjk_A 127 QSRGFGFVTYDSADAVDRVCQN 148 (167)
T ss_dssp TTSEEEEEEESSHHHHHHHHHC
T ss_pred ccceEEEEEECCHHHHHHHHhC
Confidence 7889999999999999998753
No 81
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=96.78 E-value=0.00072 Score=53.40 Aligned_cols=60 Identities=12% Similarity=-0.118 Sum_probs=44.0
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|-..... ..........+|.+||+|.++|+|+++++
T Consensus 8 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 8 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ--IPLDYETEKHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp SEEEEECCCTTCCHHHHHHHHGGGSCEEEEE--CCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHhccCCEEEEE--EEECCCCCccccEEEEEECCHHHHHHHHH
Confidence 4455567889999999999999998322111 11113456789999999999999999873
No 82
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.77 E-value=0.00043 Score=55.95 Aligned_cols=60 Identities=7% Similarity=-0.216 Sum_probs=44.2
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|...... -.+......+|.+||+|.++|+|+++++
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~---i~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVT---ICKDREGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEE---EEECTTSCEEEEEEEEESSTHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEE---EEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 34555567889999999999999998422111 1122236778999999999999999875
No 83
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.76 E-value=0.00061 Score=56.14 Aligned_cols=61 Identities=8% Similarity=-0.144 Sum_probs=44.5
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 75 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIY--LAKDKTTGQSKGFAFISFHRREDAARAIA 75 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEE--EEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE--EeecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 34455567889999999999999998422111 11112356788999999999999999875
No 84
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.75 E-value=0.00047 Score=55.57 Aligned_cols=60 Identities=8% Similarity=-0.100 Sum_probs=43.9
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|+.+|...... ..........+|.+||+|.++|+|+++++
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 75 (95)
T 2cqc_A 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVS--IVYDQQSRRSRGFAFVYFENVDDAKEAKE 75 (95)
T ss_dssp GCEEEESCCSSCCHHHHHHHHHTTSCEEEEE--EEECSSSSSEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeeEEE--EEEcCCCCCcccEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998321111 11113346788999999999999999875
No 85
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.75 E-value=0.0011 Score=58.43 Aligned_cols=61 Identities=10% Similarity=-0.071 Sum_probs=45.0
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|+.+|...... ..........+|.+||+|.++|+|+++++
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~--i~~~~~~g~~~G~afV~F~~~~~A~~Ai~ 107 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY--IPRDRYTKESRGFAFVRFHDKRDAEDAMD 107 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE--CCCCSSSSSCCSCCEEECSCHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--EEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 34555667889999999999999998321111 11112356789999999999999999876
No 86
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.74 E-value=0.00048 Score=57.61 Aligned_cols=59 Identities=15% Similarity=-0.102 Sum_probs=43.5
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... -++......+|.+||+|.++|+|+++++
T Consensus 16 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~---i~~~~~g~~~g~afV~f~~~~~a~~A~~ 74 (114)
T 2do0_A 16 STVFVANLDYKVGWKKLKEVFSMAGVVVRAD---ILEDKDGKSRGIGTVTFEQSIEAVQAIS 74 (114)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEE---EEECTTCSEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE---EEECCCCCeeeEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998322111 1222236778999999999999999865
No 87
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=96.73 E-value=0.001 Score=58.20 Aligned_cols=95 Identities=5% Similarity=-0.153 Sum_probs=61.6
Q ss_pred cCHHHHHHHHhcCCcEEEcCCeEeeCCcccccCCCCCCceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCC
Q 008981 445 SNIQLILDSLRTSTVVEVQDDRVRRRNEWMKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNA 523 (547)
Q Consensus 445 ~d~~lI~eALr~S~~LEVsgdKVRRr~~w~kwvp~~~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~ 523 (547)
.+.+....|| ...-.++.+.+|+-...-....+.. ..++...+++...|.++|.++|..+|...... -.+ ...
T Consensus 59 ~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~--~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~---i~~~~~~ 132 (172)
T 2g4b_A 59 RSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPG--AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFN---LVKDSAT 132 (172)
T ss_dssp SSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTT--TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEE---EEECTTT
T ss_pred CCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCC--CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEE---EEecCCC
Confidence 3677777888 5566778876554321111111111 23445556788999999999999998422111 112 235
Q ss_pred cccCCcccEEcCChhhhhcCCC
Q 008981 524 NCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 524 k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
...+|.+||+|.++|+|+++++
T Consensus 133 g~~~g~afV~f~~~~~A~~A~~ 154 (172)
T 2g4b_A 133 GLSKGYAFCEYVDINVTDQAIA 154 (172)
T ss_dssp CSEEEEEEEEESSTTHHHHHHH
T ss_pred CCcceEEEEEeCCHHHHHHHHH
Confidence 6678999999999999998875
No 88
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.72 E-value=0.00075 Score=56.78 Aligned_cols=60 Identities=10% Similarity=-0.176 Sum_probs=44.1
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++++
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAK--VFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCCSEEE--EEECSSSCSEEEEEEEECSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EEECCCCCCcCccEEEEECCHHHHHHHHH
Confidence 4455567889999999999999998421111 11112356788999999999999999874
No 89
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.72 E-value=0.00054 Score=56.70 Aligned_cols=60 Identities=10% Similarity=-0.081 Sum_probs=45.3
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|...... -++......+|.+||+|.++|+|+++++
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~---i~~~~~g~~~g~afV~f~~~~~a~~A~~ 88 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAA---VHYDRSGRSLGTADVHFERKADALKAMK 88 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE---EEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE---EEECCCCCcceEEEEEECCHHHHHHHHH
Confidence 45566667899999999999999998421111 1222356779999999999999999875
No 90
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=96.72 E-value=0.00056 Score=56.28 Aligned_cols=59 Identities=5% Similarity=-0.149 Sum_probs=44.7
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|-..... -.+......+|.+||+|.++|+|+++++
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~---i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 10 NTVFVGGIDVRMDETEIRSFFARYGSVKEVK---IITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEE---EEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE---EEECCCCCccceEEEEECCHHHHHHHHh
Confidence 4556667889999999999999998422111 1122256788999999999999999986
No 91
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.71 E-value=0.00053 Score=54.42 Aligned_cols=59 Identities=7% Similarity=-0.162 Sum_probs=44.0
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|+.+|...... -.+ ......+|.+||+|.++|+|+++++
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 66 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPFGRISDAR---VVKDMATGKSKGYGFVSFFNKWDAENAIQ 66 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE---EEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998422111 112 2356789999999999999999875
No 92
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.68 E-value=0.00079 Score=59.00 Aligned_cols=60 Identities=8% Similarity=-0.100 Sum_probs=43.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|+.+|...... ..........+|.+||+|.++|+|+++++
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~--i~~d~~tg~~~G~afV~F~~~~~A~~Ai~ 106 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFSKYGPIADVS--IVYDQQSRRSRGFAFVYFENVDDAKEAKE 106 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHTTTSCEEEEE--EECCSSSSCCCCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 3455557889999999999999998421111 11112346789999999999999999875
No 93
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.68 E-value=0.0006 Score=57.56 Aligned_cols=61 Identities=7% Similarity=-0.095 Sum_probs=42.3
Q ss_pred eeeecCCCCCCChhhhh---hhcccccccccc-cccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLA---PSFQNITVKEGA-VNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~---~~F~~~gle~~~-~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++...|.++|. ++|..+|-.... .....-....+..+|.+||||.++|+|+++++
T Consensus 17 ~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~ 81 (111)
T 2cpi_A 17 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQ 81 (111)
T ss_dssp CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHH
Confidence 34445678899999999 999999832221 11111111245678999999999999999875
No 94
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.67 E-value=0.0016 Score=57.53 Aligned_cols=61 Identities=10% Similarity=-0.071 Sum_probs=45.0
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++|+
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~--i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 130 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY--IPRDRYTKESRGFAFVRFHDKRDAEDAMD 130 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEE--CCCCSSCTTSCCEEEEEESBHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 34566667899999999999999998322111 11112356789999999999999999875
No 95
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.66 E-value=0.00055 Score=56.34 Aligned_cols=59 Identities=8% Similarity=-0.116 Sum_probs=43.4
Q ss_pred eeeeecCCCCCCChhhhhhhccc-ccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQN-ITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~-~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|.. +|...... -++......+|.+||+|.++|+|+++++
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~---i~~~~~g~~~g~afV~f~~~~~a~~A~~ 69 (104)
T 2dhg_A 10 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGK---VVLDQTGVSKGYGFVKFTDELEQKRALT 69 (104)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHCTTEEEEE---EEECTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEE---EEECCCCCccceEEEEECCHHHHHHHHH
Confidence 34555678899999999999999 98321111 1122255688999999999999999865
No 96
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.65 E-value=0.0011 Score=57.03 Aligned_cols=60 Identities=10% Similarity=-0.170 Sum_probs=44.8
Q ss_pred ceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|...... -++ ......+|.+||+|.++|+|+++++
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 123 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQ---IPLDYETEKHRGFAFVEFELAEDAAAAID 123 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEE---CCCCTTTCCCCSEEEEEESCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEE---EeecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 34555667889999999999999998422211 112 2456789999999999999999874
No 97
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.65 E-value=0.00044 Score=59.96 Aligned_cols=62 Identities=10% Similarity=-0.125 Sum_probs=44.8
Q ss_pred CceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 482 RISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 482 r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
...++...+++...|.++|.++|..+|...... ..........+|.+||||.++|+|+++++
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 102 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVK--IVCDRETRQSRGYGFVKFQSGSSAQQAIA 102 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEE--EEEETTTTEEEEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 344555567889999999999999998321111 01112346779999999999999998875
No 98
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.64 E-value=0.00034 Score=57.01 Aligned_cols=60 Identities=5% Similarity=-0.137 Sum_probs=42.6
Q ss_pred eeeecCCCCCCChhhhhhhcccccccccccccccccC--CCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTG--NANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~--~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++...|.++|.++|+.+|...... ...-+. .+...+|.+||+|.++|+|+++++
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~-i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~ 68 (98)
T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFSKVGAIKSCT-ISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 68 (98)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEE-EEEEECTTCCEEEEEEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-EEecCCCCCCcCcccEEEEEECCHHHHHHHHH
Confidence 445557889999999999999998321111 000001 134788999999999999999875
No 99
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.64 E-value=0.00092 Score=54.51 Aligned_cols=59 Identities=7% Similarity=-0.175 Sum_probs=42.9
Q ss_pred eeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++...|.++|.++|+.+|...... ..........+|.+||+|.++|+|+++++
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 62 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLK--MMFDPQTGRSKGYAFIEFRDLESSASAVR 62 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEE--CCBCTTTCCBCSEEEEEESSHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEE--EEeCCCCCccceEEEEEECCHHHHHHHHH
Confidence 344456789999999999999998322111 11112346779999999999999998874
No 100
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.64 E-value=0.00067 Score=55.95 Aligned_cols=59 Identities=19% Similarity=-0.030 Sum_probs=43.7
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... -++......+|.+||+|.++|+|+++++
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~---i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 74 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQPFGVIDECT---VLRGPDGSSKGCAFVKFSSHTEAQAAIH 74 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEE---EEECSSSCEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE---EEECCCCCcCcEEEEEeCCHHHHHHHHH
Confidence 4455567889999999999999998421111 1122246678999999999999999864
No 101
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.63 E-value=0.00044 Score=56.79 Aligned_cols=60 Identities=8% Similarity=-0.104 Sum_probs=45.1
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|.... . .-+.......+|.+||+|.++|+|+++++
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~--~~~~~~~g~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-L--AVVDVRTGTNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C--CCCEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E--EEecCCCCCcCcEEEEEECCHHHHHHHHh
Confidence 445666678999999999999999985332 1 11112345688999999999999999874
No 102
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.62 E-value=0.0011 Score=56.72 Aligned_cols=59 Identities=10% Similarity=-0.073 Sum_probs=44.1
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|-.... .-.+......+|.+||+|.++|+|+++++
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v---~i~~~~~g~~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEFGTLKKA---AVDYDRSGRSLGTADVHFERRADALKAMK 94 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCSEE---EEECCSSSSCCSEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEE---EEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 456666788999999999999999832111 11222256688999999999999998865
No 103
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.60 E-value=0.00066 Score=65.18 Aligned_cols=61 Identities=8% Similarity=-0.206 Sum_probs=44.5
Q ss_pred eeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+|..-+++...|.++|+++|..||++.+....+.....+...+|.+||+|.++|+|+++|+
T Consensus 70 ~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~ 130 (229)
T 3q2s_C 70 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 130 (229)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 4556678899999999999999983111111111113456788999999999999999876
No 104
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.59 E-value=0.00081 Score=60.04 Aligned_cols=61 Identities=10% Similarity=-0.062 Sum_probs=45.6
Q ss_pred ceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
..++...+++...|.++|.++|+.+|...... -++ ......+|.+||+|.++|+|+++|+.
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCV---VMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE---EEEcCCCCCccceEEEEeCCHHHHHHHHhc
Confidence 44566667899999999999999998422111 111 23456789999999999999998865
No 105
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.59 E-value=0.00086 Score=56.22 Aligned_cols=53 Identities=9% Similarity=-0.088 Sum_probs=39.7
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..+...+++...|.++|.++|..+|..... .+-.+ |.+||||.++|+|+++++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~----~i~~~-----g~afV~f~~~~~a~~Ai~ 68 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYA----DVYRD-----GTGVVEFVRKEDMTYAVR 68 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEE----EEETT-----TEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEE----EEecC-----CEEEEEECCHHHHHHHHH
Confidence 345556789999999999999999831111 11111 999999999999998875
No 106
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.58 E-value=0.00093 Score=55.16 Aligned_cols=60 Identities=7% Similarity=-0.149 Sum_probs=44.3
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|-..... ..........+|.+||+|.++|+|+++++
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYGEIKNIH--LNLDRRTGYLKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEE--EEECTTTSSEEEEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeEEEE--EEecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 4555667889999999999999998322111 11113346778999999999999998875
No 107
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.56 E-value=0.0011 Score=55.62 Aligned_cols=59 Identities=7% Similarity=-0.109 Sum_probs=43.6
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... -++......+|.+||+|.++|+|+++++
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~---i~~~~~g~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFGQVISTR---ILRDSSGTSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTSCEEEEE---EEECSSSCEEEEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE---EEECCCCCcceEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998321111 1122256778999999999999998764
No 108
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.54 E-value=0.00049 Score=58.60 Aligned_cols=56 Identities=7% Similarity=-0.137 Sum_probs=41.2
Q ss_pred eeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 486 ESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 486 V~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+..-+++...|.++|.++|..+|...... +-.+....+|.+||+|.++|+|+++++
T Consensus 8 lfV~nLp~~~te~~L~~~F~~~G~v~~v~----i~~d~~~~kg~afV~f~~~~~A~~Ai~ 63 (115)
T 4f25_A 8 IFIKNLDKSIDNKALYDTFSAFGNILSCK----VVCDENGSKGYGFVHFETQEAAERAIE 63 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEE----EEEETTEEEEEEEEEESCHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHhccCCEEEEE----EeecCCCCCceEEEEECCHHHHHHHHH
Confidence 44456788999999999999998422211 112223357999999999999999874
No 109
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.53 E-value=0.00073 Score=58.96 Aligned_cols=60 Identities=12% Similarity=-0.083 Sum_probs=44.3
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
...+...+++...|.++|.++|+.+|-.... .-.+......+|.+||+|.++|+|+++++
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEEC---RILRGPDGLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEE---EEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEE---EEEECCCCCEEEEEEEEECCHHHHHHHHH
Confidence 3445566788999999999999999842211 11223345678999999999999998874
No 110
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.51 E-value=0.001 Score=54.22 Aligned_cols=60 Identities=5% Similarity=-0.136 Sum_probs=44.0
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|+.+|....... -++ ......+|.+||+|.++|+|+++++
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~--i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFATMGETVMSVK--IIRNRLTGIPAGYCFVEFADLATAEKCLH 70 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHHHTTCCCCEEE--EEECSSSCCEEEEEEEECSCHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE--EeecCCCCCcCCEEEEEeCCHHHHHHHHH
Confidence 44555678899999999999999984220111 111 2356678999999999999999875
No 111
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=96.50 E-value=0.00089 Score=52.64 Aligned_cols=58 Identities=7% Similarity=-0.092 Sum_probs=42.8
Q ss_pred eeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 486 ESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 486 V~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++++
T Consensus 4 l~V~nlp~~~t~~~l~~~f~~~G~i~~~~--i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 61 (83)
T 3md1_A 4 LFVGDLNVNVDDETLRNAFKDFPSYLSGH--VMWDMQTGSSRGYGFVSFTSQDDAQNAMD 61 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHTTSTTEEEEE--EEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEE--EEEcCCCCCccceEEEEECCHHHHHHHHH
Confidence 44557788999999999999998322111 11112456779999999999999998864
No 112
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.50 E-value=0.0012 Score=53.99 Aligned_cols=54 Identities=13% Similarity=-0.146 Sum_probs=40.4
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|+.+|...... +... +|.+||+|.++|+|+++++
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~----~~~~----~g~afV~f~~~~~A~~A~~ 71 (97)
T 1why_A 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTID----HVKG----DSFAYIQYESLDAAQAACA 71 (97)
T ss_dssp SCEEEECCCSSCCHHHHHHHHHTTSCEEEEE----ECSS----SCCEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE----EeCC----CCEEEEEECCHHHHHHHHH
Confidence 3455557889999999999999998422211 1121 7899999999999998865
No 113
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.49 E-value=0.00072 Score=57.49 Aligned_cols=59 Identities=10% Similarity=-0.089 Sum_probs=43.7
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|-..... -++ ......+|.+||+|.++|+|+++++
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 96 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRIT---ILCDKFSGHPKGYAYIEFAERNSVDAAVA 96 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEE---EEEECTTSSCEEEEEEEESSHHHHHHHHT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE---EEecCCCCCcccEEEEEECCHHHHHHHHh
Confidence 3455556788999999999999998322111 111 2456779999999999999999874
No 114
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.48 E-value=0.00069 Score=54.97 Aligned_cols=56 Identities=14% Similarity=-0.042 Sum_probs=43.9
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|-... + ......+|.+||+|.++|+|+++++
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~------~-~~~~~~~g~afV~f~~~~~a~~A~~ 71 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRL------V-SQDGKSKGIAYIEFKSEADAEKNLE 71 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECC------E-EETTEEEEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEE------e-CCCCCcceEEEEEECCHHHHHHHHH
Confidence 455666678999999999999999973211 1 3345678999999999999999875
No 115
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.47 E-value=0.0013 Score=55.89 Aligned_cols=54 Identities=11% Similarity=-0.130 Sum_probs=40.7
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++..-+++...|.++|.++|+.+|...... -++ .+|.+||||.++|+|+++++
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~---i~~-----~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 16 RVLHIRKLPGEVTETEVIALGLPFGKVTNIL---MLK-----GKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHTTTTTSCEEEEE---EET-----TTTEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE---EEC-----CCCEEEEEECCHHHHHHHHH
Confidence 3455557888999999999999998422211 111 17999999999999998864
No 116
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.46 E-value=0.0011 Score=56.72 Aligned_cols=60 Identities=13% Similarity=-0.058 Sum_probs=44.1
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+++...+++...|.++|.++|+++|...... ......+...+|.+||+|.++|+|+++++
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~--i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~ 66 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCRKYGEVEEVE--ILLHPRTRKHLGLARVLFTSTRGAKETVK 66 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEE--EEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCeeEEE--EEECCCCCceeeEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998422211 11113346789999999999999999864
No 117
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.46 E-value=0.00073 Score=55.48 Aligned_cols=60 Identities=7% Similarity=-0.140 Sum_probs=43.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+++...+++...|.++|.++|..+|...... ..........+|.+||+|.++|+|+++++
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~--i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFR--LVYDRETGKPKGYGFCEYQDQETALSAMR 68 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEE--EEEETTTTEEEEEEEEECSCHHHHHHHHH
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEE--EEeCCCCCccceEEEEEECCHHHHHHHHH
Confidence 4455567889999999999999998321111 11112356778999999999999998874
No 118
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.45 E-value=0.0011 Score=59.99 Aligned_cols=97 Identities=8% Similarity=-0.086 Sum_probs=58.9
Q ss_pred CHHHHHHHHhcCCcEEEcCCeEee--CCcccccC-------CCCCCceeeeecCCCCCCChhhhhhhccccccccccccc
Q 008981 446 NIQLILDSLRTSTVVEVQDDRVRR--RNEWMKWI-------ATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQ 516 (547)
Q Consensus 446 d~~lI~eALr~S~~LEVsgdKVRR--r~~w~kwv-------p~~~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~ 516 (547)
+.+....||+...-.++.+.+|+- -.....-. .......++...+++...|.++|.++|..+|......
T Consensus 79 ~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~-- 156 (216)
T 2qfj_A 79 VPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSAT-- 156 (216)
T ss_dssp SHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEE--
T ss_pred CHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEE--
Confidence 566677777755545566554332 11111000 0011224455667889999999999999998321111
Q ss_pred cccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 517 RSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 517 ~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
-++ ......+|.+||+|.++|+|+++++
T Consensus 157 -i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 157 -LARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp -EEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred -EEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 112 2345678999999999999998875
No 119
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.42 E-value=0.0013 Score=52.09 Aligned_cols=55 Identities=11% Similarity=-0.108 Sum_probs=41.0
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|...... -.+ .+|.+||+|.++|+|+++++
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~---~~~-----~kg~afV~f~~~~~A~~a~~ 66 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTIT---VVQ-----RQQCAFIQFATRQAAEVAAE 66 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEE---EEG-----GGTEEEEEESSHHHHHHHHH
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEE---EEC-----CCCEEEEEECCHHHHHHHHH
Confidence 34455567889999999999999998422111 111 36899999999999999875
No 120
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.40 E-value=0.00085 Score=60.92 Aligned_cols=61 Identities=11% Similarity=-0.129 Sum_probs=43.5
Q ss_pred eeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++...|.++|.++|..+|...+..............+|.+||||.++|+|+++++
T Consensus 57 ~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~ 117 (156)
T 3n9u_C 57 AVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLE 117 (156)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 4555578899999999999999983111111111113456789999999999999998865
No 121
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=96.39 E-value=0.0015 Score=51.79 Aligned_cols=60 Identities=13% Similarity=-0.059 Sum_probs=41.1
Q ss_pred ceeeeecCCCCCCChhhhhhhcccc----ccccccc-ccccccCCCcccCCcccEEcCChhhhhcCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNI----TVKEGAV-NQRSLTGNANCHCEDAPGIHSSEGEATEEP 544 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~----gle~~~~-~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~ 544 (547)
.+++...+++...|.++|.++|..+ |+..... .+..++.. ..+|.+||||.++|+|++++
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~--~~kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC--SSSSEEEEEESSHHHHHHHG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec--CCCcEEEEEcCCHHHHHHHH
Confidence 3455566788999999999999999 5311000 11112211 12799999999999999987
No 122
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.38 E-value=0.0012 Score=55.89 Aligned_cols=61 Identities=11% Similarity=-0.131 Sum_probs=44.9
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|+.+|...... ..........+|.+||+|.++|+|+++++
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--i~~~~~~g~~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQ--LMMDSETGRSKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEE--EEEETTTTEEEEEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE--EEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 35566667889999999999999998421111 11113456788999999999999998874
No 123
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.36 E-value=0.0015 Score=55.73 Aligned_cols=54 Identities=7% Similarity=-0.136 Sum_probs=40.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++..-+++...|.++|.++|+.+|...... -++ .+|.+||||.++|+|+++++
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~---i~~-----~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 16 PVVHVRGLCESVVEADLVEALEKFGTICYVM---MMP-----FKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp SEEEEESCCSSCCHHHHHHHHTTTSCEEEEE---EET-----TTTEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE---EEC-----CCCEEEEEECCHHHHHHHHH
Confidence 4455557889999999999999998422211 111 27999999999999998864
No 124
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.35 E-value=0.0013 Score=57.04 Aligned_cols=56 Identities=14% Similarity=-0.032 Sum_probs=41.4
Q ss_pred eeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.+...+++...|.++|.++|+.+|.+..... -..+..+|.+||||.++|+|+++++
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~-----i~~~~~rGfaFV~F~~~e~A~~Ai~ 85 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARENSLETTFSS-----VNTRDFDGTGALEFPSEEILVEALE 85 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHTCCCSEEE-----CSSCSSSCCEEEEESSHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCeeEEEE-----EEcCCCCCEEEEEECCHHHHHHHHH
Confidence 3445578899999999999999983211111 1112478999999999999998874
No 125
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=95.35 E-value=0.00059 Score=57.65 Aligned_cols=62 Identities=11% Similarity=-0.004 Sum_probs=43.9
Q ss_pred eeeecCCCCCCChhhhhhhcccccccccccc----ccccc--CCCcccCCcccEEcCChhhhhcCCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVN----QRSLT--GNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~----~~s~R--~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
++...+++...|.++|.++|..+|....... ...+. ......+|.+||+|.++|+|+++++.
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (116)
T 2lcw_A 9 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 76 (116)
Confidence 3445567889999999999999984322000 01111 23467789999999999999999863
No 126
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.32 E-value=0.0016 Score=52.40 Aligned_cols=53 Identities=6% Similarity=-0.154 Sum_probs=40.4
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|...... +.+|.+||+|.++|+|+++++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~----------~~~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECD----------IIKNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEE----------EETTEEEEEESSHHHHHHHHH
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE----------EECCEEEEEECCHHHHHHHHH
Confidence 34455567889999999999999998321111 127899999999999998764
No 127
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.31 E-value=0.0028 Score=60.60 Aligned_cols=96 Identities=9% Similarity=-0.083 Sum_probs=61.3
Q ss_pred CHHHHHHHHhcCCcEEEcCCeEe--eCCcccccCCCCCCceeeeecCCCCC-CChhhhhhhcccccccccccccccccCC
Q 008981 446 NIQLILDSLRTSTVVEVQDDRVR--RRNEWMKWIATPGRISTESGLSSPAG-SSVDVLAPSFQNITVKEGAVNQRSLTGN 522 (547)
Q Consensus 446 d~~lI~eALr~S~~LEVsgdKVR--Rr~~w~kwvp~~~r~~tV~g~~~p~~-~T~d~L~~~F~~~gle~~~~~~~s~R~~ 522 (547)
+.+....||+...-.++.+..|+ .... ..-........++...+++.. .|.++|.++|+.+|...... -.+..
T Consensus 146 ~~~~a~~A~~~l~~~~~~g~~i~v~~a~~-~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~---i~~~~ 221 (284)
T 3smz_A 146 KKDSAARAKSDLLGKPLGPRTLYVHWTDA-GQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQ---LACGQ 221 (284)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCG-GGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEE---EEECS
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEECCC-CCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEE---EEECC
Confidence 56667777766666677775544 2211 111122233445566678888 48999999999998422111 12233
Q ss_pred CcccCCcccEEcCChhhhhcCCC
Q 008981 523 ANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 523 ~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
....+|.+||+|.+.|+|+++++
T Consensus 222 ~g~~~g~afV~f~~~~~A~~A~~ 244 (284)
T 3smz_A 222 DGQLKGFAVLEYETAEMAEEAQQ 244 (284)
T ss_dssp SCCEEEEEEEECSSHHHHHHHHH
T ss_pred CCCcccEEEEEeCCHHHHHHHHH
Confidence 45678999999999999998864
No 128
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.30 E-value=0.0017 Score=57.41 Aligned_cols=54 Identities=11% Similarity=-0.125 Sum_probs=40.4
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++..-+++...|.++|.++|+.||...... -++ .+|.+||||.++|+|+++++
T Consensus 32 ~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~---i~~-----~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 32 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLL---MLK-----GKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp SEEEEESCCTTCCHHHHHHHHTTTSCCCEEE---EEG-----GGTEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE---EeC-----CCCEEEEEECCHHHHHHHHH
Confidence 3455557888999999999999998422211 111 17999999999999998864
No 129
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=96.30 E-value=0.0022 Score=57.27 Aligned_cols=59 Identities=5% Similarity=-0.222 Sum_probs=43.7
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|-..... -.+ ......+|.+||+|.++|+|+++++
T Consensus 115 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~---~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 115 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFN---LVKDSATGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTBSCEEEEE---EEECTTTCSEEEEEEEEESSSSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccEEE---EeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 4455567888999999999999998321111 112 2356678999999999999998865
No 130
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.29 E-value=0.0012 Score=54.27 Aligned_cols=53 Identities=11% Similarity=-0.086 Sum_probs=39.6
Q ss_pred eeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 486 ESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 486 V~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+...+++...|.++|.++|+.+|..... .+..+ .+|.+||+|.++|+|+++++
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~~G~i~~v----~i~~~---~~g~afV~f~~~~~a~~A~~ 55 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSYYGPLRTV----WIARN---PPGFAFVEFEDPRDAEDAVR 55 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHHHCCCSEE----EEESS---SSSEEEEECSSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEE----EEeeC---CCCEEEEEECCHHHHHHHHH
Confidence 3344678899999999999999832111 11122 78999999999999999875
No 131
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.27 E-value=0.0011 Score=56.45 Aligned_cols=51 Identities=8% Similarity=-0.111 Sum_probs=38.3
Q ss_pred eeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 486 ESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 486 V~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+...+++...|.++|.++|.++|.... . .+-.+ |.+||||.++|+|+++++
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~-~---~i~~~-----g~afV~f~~~~~a~~Ai~ 69 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCY-A---DVYRD-----GTGVVEFVRKEDMTYAVR 69 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEE-E---EECTT-----SEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEE-E---EEecC-----CEEEEEECCHHHHHHHHH
Confidence 444567899999999999999983111 1 11111 999999999999999875
No 132
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.23 E-value=0.0014 Score=52.99 Aligned_cols=54 Identities=11% Similarity=-0.109 Sum_probs=40.5
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... .+ ..+|.+||+|.++|+|+++++
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~---~~-----~~~g~afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 9 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQ---VL-----LKSGYAFVDYPDQNWAIRAIE 62 (93)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHTTCCCSSC---EE-----EETTEEEECCSCHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCceEEE---EE-----cCCCEEEEEECCHHHHHHHHH
Confidence 3455557889999999999999998411111 11 247899999999999998864
No 133
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.19 E-value=0.002 Score=54.57 Aligned_cols=53 Identities=9% Similarity=-0.160 Sum_probs=40.8
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|...... +.+|.+||+|.++|+|+++++
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~----------i~kg~afV~f~~~~~A~~Ai~ 83 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVK----------ILNGFAFVEFEEAESAAKAIE 83 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEE----------EETTEEEEECSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEE----------EECCEEEEEECCHHHHHHHHH
Confidence 34455667889999999999999998321111 118999999999999998864
No 134
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.19 E-value=0.0025 Score=55.40 Aligned_cols=60 Identities=7% Similarity=-0.179 Sum_probs=44.8
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
.++...+++...|.++|.++|+.+|...... -++ ......+|.+||+|.++|+|+++++.
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLK---IMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEE---CCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE---EEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 3455567899999999999999998322111 122 24567899999999999999998753
No 135
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.17 E-value=0.0014 Score=56.87 Aligned_cols=54 Identities=11% Similarity=-0.125 Sum_probs=40.6
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|++.|+.+|-..... -++ .+|.+||||.++|+|+++++
T Consensus 17 ~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~---i~~-----~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 17 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLL---MLK-----GKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp CEEEECSCCTTSCHHHHHHHHHHHCCEEEEE---EET-----TTTEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE---EEc-----CCCEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998422211 111 17999999999999998865
No 136
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.16 E-value=0.0053 Score=55.37 Aligned_cols=56 Identities=16% Similarity=-0.072 Sum_probs=40.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|.+...... ++. .+|.+||+|.++|+|+++++
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i--~~~----~~g~afV~f~~~~~A~~A~~ 176 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF--FQK----DRKMALIQMGSVEEAVQALI 176 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE--SST----TSSCEEEECSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE--EeC----CCcEEEEEeCCHHHHHHHHH
Confidence 445566788899999999999999832111111 111 27999999999999999864
No 137
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.15 E-value=0.0022 Score=52.48 Aligned_cols=54 Identities=7% Similarity=-0.165 Sum_probs=40.2
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... +. ..+|.+||+|.++|+|+++++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~----~~----~~kg~afV~f~~~~~a~~a~~ 69 (99)
T 2cpj_A 16 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVF----IH----KDKGFGFIRLETRTLAEIAKV 69 (99)
T ss_dssp TEEEEESCCTTCCHHHHHHHTSTTCCCSEEE----EE----TTTTEEEEECSSSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCCeEEEE----Ee----cCCCEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998321111 11 127999999999999998763
No 138
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.15 E-value=0.0019 Score=53.43 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=40.2
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|+.+|..... ++.++.+||+|.++|+|+++++
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v----------~~~~~~afV~f~~~~~a~~A~~ 63 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQFGKLERV----------KKLKDYAFIHFDERDGAVKAME 63 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHSCEEEE----------EECSSCEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEE----------EEECCEEEEEeCCHHHHHHHHH
Confidence 345556788899999999999999842211 2336799999999999999875
No 139
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=96.14 E-value=0.0029 Score=54.83 Aligned_cols=60 Identities=17% Similarity=0.001 Sum_probs=43.3
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|..... ++.-++ ......+|.+||||.++ +|+++++
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~~~G~v~~~-~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~ 84 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALAPYAVLSSS-NVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQ 84 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHGGGCCCCTT-TEECCBCSSSSSBCSCEEEECCHH-HHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCccee-eEEEEEcCCCCCcceEEEEEECCH-HHHHHHH
Confidence 445666789999999999999999843221 111122 33567899999999999 9988753
No 140
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.13 E-value=0.0023 Score=52.37 Aligned_cols=56 Identities=9% Similarity=-0.099 Sum_probs=42.6
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|.... .. + ....+|.+||+|.++|+|+++++
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~--~~--~---~~~~~g~afV~f~~~~~a~~A~~ 74 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVPL--RL--T---WQGPRRRAFLHYPDSAAAQQAVS 74 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCCS--EE--E---EETTTTEEEEECSSHHHHHHHHH
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEEE--EE--E---cCCCCcEEEEEECCHHHHHHHHH
Confidence 345556678999999999999999985321 11 1 13578999999999999998874
No 141
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.10 E-value=0.00092 Score=58.92 Aligned_cols=56 Identities=9% Similarity=-0.142 Sum_probs=41.4
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|-..... +-.+ .+|.+||+|.++|+|+++++
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~----i~~~---~~g~afV~f~~~~~a~~A~~ 128 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVW----VARN---PPGFAFVEFEDPRDAADAVR 128 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEE----ECSS---SCSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEE----EeeC---CCcEEEEEECCHHHHHHHHH
Confidence 34455567889999999999999998321111 1111 58999999999999998864
No 142
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.0032 Score=51.63 Aligned_cols=54 Identities=15% Similarity=-0.145 Sum_probs=40.9
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... +. ..+|.+||+|.+.|+|+++++
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~----~~----~~~g~afV~f~~~~~A~~Ai~ 81 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQNFGFILDFK----HY----PEKGCCFIKYDTHEQAAVCIV 81 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSCCSEEE----EE----TTTTEEEEECSSHHHHHHHHH
T ss_pred CEEEEcCCCcccCHHHHHHHHHhCCCEEEEE----Ee----cCCCEEEEEECCHHHHHHHHH
Confidence 4455567889999999999999998422111 11 357999999999999998763
No 143
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.08 E-value=0.0016 Score=52.20 Aligned_cols=57 Identities=5% Similarity=-0.200 Sum_probs=40.6
Q ss_pred eeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 486 ESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 486 V~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+...+++...|.++|.++|+.+|-..... ..........+|.+||+|.++| |+++++
T Consensus 4 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~-a~~a~~ 60 (90)
T 2ki2_A 4 IYVGNLVYSATSEQVKELFSQFGKVFNVK--LIYDRETKKPKGFGFVEMQEES-VSEAIA 60 (90)
T ss_dssp EEEEEECTTSSHHHHTTTHHHHTCCSEEE--ECCCSSSCCCCEEEEEEECTTH-HHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHhcCCEEEEE--EEEcCCCCCcceEEEEEECCHH-HHHHHH
Confidence 44446788999999999999998321111 1111234678999999999999 988764
No 144
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.07 E-value=0.0026 Score=54.80 Aligned_cols=55 Identities=13% Similarity=-0.093 Sum_probs=41.9
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.+++..-+++.+.|.++|.+.|..||...... -++ .+|.+||||.++|+|+++++
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~---i~~-----~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVV---VMP-----KKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEE---EET-----TTTEEEEEESSHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEE---EEc-----CCCEEEEEECCHHHHHHHHH
Confidence 45566667889999999999999998432211 111 36899999999999998864
No 145
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=96.07 E-value=0.0042 Score=50.79 Aligned_cols=53 Identities=8% Similarity=-0.170 Sum_probs=39.4
Q ss_pred eeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEP 544 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~ 544 (547)
++..-+++...|.++|.++|+.+|-..... +-. ..+|.+||+|.++|+|++..
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~----i~~---~srGfaFV~F~~~~~A~~~~ 65 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQYGEVVDVF----IPK---PFRAFAFVTFADDKVAQSLC 65 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEE----CCS---SCCSEEEEEESCHHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEEEEE----Eee---CCCCEEEEEECCHHHHHHHc
Confidence 345557899999999999999998422111 111 26899999999999999643
No 146
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.07 E-value=0.0033 Score=54.95 Aligned_cols=54 Identities=7% Similarity=-0.136 Sum_probs=40.1
Q ss_pred eeeeecCCCCC-CChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAG-SSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~-~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++..-+++.. .|.++|++.|..||-..... -+ ..+|.+||||.++|+|+++++
T Consensus 26 ~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~---i~-----~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 26 RVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYI---LM-----RMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CEEEEESCCCSSCCSHHHHTTTTTTSCCSEEE---EE-----TTTTEEEEECSSHHHHHHHHH
T ss_pred CEEEEeCCCCccCCHHHHHHHHHhcCCEEEEE---Ee-----cCCCEEEEEECCHHHHHHHHH
Confidence 34555678887 99999999999998322111 11 136999999999999998764
No 147
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.05 E-value=0.0018 Score=56.39 Aligned_cols=59 Identities=14% Similarity=-0.122 Sum_probs=42.9
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccccccccc-CCC--cccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNA--NCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~--k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+++...+++...|.++|.++|+.+|...... -++ ... ...+|.+||+|.++|+|+++++
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~---i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 65 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEIN---VLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 65 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEE---EEEECSSSSCEEEEEEEEEESSHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE---EEecCCCCCCCcceEEEEEECCHHHHHHHHH
Confidence 3455567889999999999999998422211 111 122 2788999999999999998764
No 148
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.04 E-value=0.0049 Score=50.07 Aligned_cols=55 Identities=11% Similarity=-0.020 Sum_probs=39.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|..... .+...... .+||+|.++|+|+++++
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v----~~~~~~g~---~afV~f~~~~~a~~ai~ 63 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLAFGPVASV----VMDKDKGV---FAIVEMGDVGAREAVLS 63 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGGGTSCEEEE----EECSSSCC---EEEEEESSHHHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEE----EEcCCCCc---EEEEEECCHHHHHHHHh
Confidence 445556788999999999999999843221 11111111 89999999999999876
No 149
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.04 E-value=0.0024 Score=53.28 Aligned_cols=57 Identities=9% Similarity=-0.092 Sum_probs=40.9
Q ss_pred eeeecCCCCCC------ChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGS------SVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~------T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++... |.++|.++|..+|...... +.......+|.+||+|.++|+|+++++
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~----i~~~~g~~~G~afV~f~~~~~A~~Ai~ 79 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDF----YPEEDGKTKGYIFLEYASPAHAVDAVK 79 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEE----CCCBTTBSCCEEEEEECSSSHHHHHHH
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEE----eeCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 34444566666 7799999999998422211 112445778999999999999998865
No 150
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.04 E-value=0.0029 Score=51.09 Aligned_cols=53 Identities=9% Similarity=-0.092 Sum_probs=40.4
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|+.+|..... ++.++.+||+|.++|+|+++++
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v----------~~~~~~afV~f~~~~~a~~A~~ 62 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEYGPVIEC----------DIVKDYAFVHMERAEDAVEAIR 62 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTTSCCCEE----------EECSSEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE----------EEECCEEEEEECCHHHHHHHHH
Confidence 3455566788999999999999999832111 1225589999999999998874
No 151
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.03 E-value=0.0031 Score=52.87 Aligned_cols=57 Identities=7% Similarity=-0.126 Sum_probs=41.5
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... +..+ ...+|.+||+|.+.|+|+++++
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~----i~~~-~~~~g~afV~f~~~~~A~~A~~ 65 (115)
T 3lqv_A 9 RILYIRNLPYKITAEEMYDIFGKYGPIRQIR----VGNT-PETRGTAYVVYEDIFDAKNAVD 65 (115)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEE----EECS-TTTTTCEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE----EeeC-CCCCcEEEEEECCHHHHHHHHH
Confidence 3455556889999999999999998422211 1111 2338999999999999998864
No 152
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=96.02 E-value=0.0021 Score=51.83 Aligned_cols=52 Identities=12% Similarity=-0.038 Sum_probs=39.8
Q ss_pred eeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++...|.++|.++|..+.+..... ...+|.+||+|.++|+|+++++
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i---------~~~~g~afV~f~~~~~a~~Ai~ 58 (88)
T 1wg1_A 7 GILVKNLPQDSNCQEVHDLLKDYDLKYCYV---------DRNKRTAFVTLLNGEQAQNAIQ 58 (88)
T ss_dssp CEEEESCCSSCCHHHHHHHTCSSCCCCEEE---------EGGGTEEEECCSCHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhhCCeEEEEE---------eCCCcEEEEEECCHHHHHHHHH
Confidence 344556889999999999999993322211 1568999999999999998864
No 153
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.02 E-value=0.0024 Score=52.38 Aligned_cols=56 Identities=13% Similarity=-0.049 Sum_probs=40.2
Q ss_pred eeeecCCCCCCChhhhh----hhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLA----PSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~----~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++...|.++|+ ++|..+|..... .+-.+... +|.+||+|.++|+|+++++
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v----~i~~~~~~-rg~afV~f~~~~~A~~Ai~ 70 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSV----ELSPHTDY-QLKAVVQMENLQDAIGAVN 70 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEE----EECSCCST-TCCEEEEESSHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEE----EEEeCCCC-CeEEEEEECCHHHHHHHHH
Confidence 34555788999999999 999999832111 11122222 8899999999999998864
No 154
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.02 E-value=0.0055 Score=57.47 Aligned_cols=56 Identities=16% Similarity=-0.072 Sum_probs=40.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|++...... ++. -+|.+||||.++|+|+++++
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i--~~~----~~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF--FQK----DRKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE--CSS----STTCEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE--EEC----CCcEEEEEECCHHHHHHHHH
Confidence 445556788899999999999999832221111 111 26899999999999999865
No 155
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.01 E-value=0.0028 Score=58.56 Aligned_cols=59 Identities=10% Similarity=-0.069 Sum_probs=43.8
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... -.+......+|.+||+|.++|+|+++++
T Consensus 89 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~---i~~d~~g~~kG~afV~F~~~~~A~~Ai~ 147 (177)
T 2f3j_A 89 AKLLVSNLDFGVSDADIQELFAEFGTLKKAA---VDYDRSGRSLGTADVHFERRADALKAMK 147 (177)
T ss_dssp EEEEEECCCSCCCHHHHHHHHHHTSCCSEEE---ECCCTTSSCSCCEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE---EEECCCCCEeeEEEEEeCCHHHHHHHHH
Confidence 3455567889999999999999998321111 1122256789999999999999998875
No 156
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.00 E-value=0.0016 Score=52.75 Aligned_cols=58 Identities=14% Similarity=-0.082 Sum_probs=42.4
Q ss_pred ceeeeecCCCCCCChhhhh----hhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLA----PSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~----~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|. ++|..+|-..... +. .....+|.+||+|.++|+|+++++
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~----i~-~~~~~~g~afV~f~~~~~A~~A~~ 69 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDIL----VS-RSLKMRGQAFVIFKEVSSATNALR 69 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEE----CC-HHHHHTTCEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEE----EE-cCCCcCcEEEEEeCCHHHHHHHHH
Confidence 3445556788999999999 9999998322211 11 124567999999999999998864
No 157
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.96 E-value=0.0051 Score=58.91 Aligned_cols=89 Identities=11% Similarity=0.004 Sum_probs=59.3
Q ss_pred CHHHHHHHHhcCCcEEEcCCeEeeCCcccccCCCCCCceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcc
Q 008981 446 NIQLILDSLRTSTVVEVQDDRVRRRNEWMKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANC 525 (547)
Q Consensus 446 d~~lI~eALr~S~~LEVsgdKVRRr~~w~kwvp~~~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~ 525 (547)
+.+....||+...-..+.+..|+-. |... ..++...+++...|.++|.++|..+|...... -++.....
T Consensus 67 ~~~~A~~A~~~l~g~~i~g~~l~v~-----~a~~---~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~---i~~~~~g~ 135 (261)
T 3sde_A 67 SRTLAEIAKAELDGTILKSRPLRIR-----FATH---GAALTVKNLSPVVSNELLEQAFSQFGPVEKAV---VVVDDRGR 135 (261)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEE-----ECCC---SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEE---EEEETTSC
T ss_pred CHHHHHHHHHHcCCcEECCceeEee-----eccc---CCcccccCCCCCCCHHHHHHHHHhcCCeEEEE---eeeCCCCC
Confidence 5666777777655566776554422 2111 22345556788999999999999998422211 12233456
Q ss_pred cCCcccEEcCChhhhhcCCC
Q 008981 526 HCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 526 f~GsvfVEFsSeEeAkk~~~ 545 (547)
.+|.+||+|.+.|+|+++++
T Consensus 136 ~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHH
T ss_pred cCcEEEEEeCCHHHHHHHHH
Confidence 78999999999999998864
No 158
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=95.95 E-value=0.0018 Score=60.58 Aligned_cols=58 Identities=10% Similarity=-0.132 Sum_probs=41.8
Q ss_pred CceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 482 RISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 482 r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
....+...+++...|.++|.++|.++|-...+. + -.+..+|.+||||.++|+|+++++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~----i--~~k~~rgfAFVeF~d~~~A~~Ai~ 102 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII----T--FTKNNQFQALLQYADPVSAQHAKL 102 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEE----E--EESSSCEEEEEEESCHHHHHHHHH
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEE----E--EeCCCCCEEEEEECCHHHHHHHHH
Confidence 334455567888999999999999998422222 1 112246899999999999998764
No 159
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.90 E-value=0.0026 Score=53.09 Aligned_cols=54 Identities=9% Similarity=-0.091 Sum_probs=40.3
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|-..... +..+ +|.+||+|.++|+|+++++
T Consensus 26 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~----i~~~----~g~afV~f~~~~~a~~A~~ 79 (109)
T 1x4g_A 26 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIR----VFPE----KGYSFVRFSTHESAAHAIV 79 (109)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHSCEEEEE----EETT----TTEEEEEESSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE----EeCC----CCEEEEEECCHHHHHHHHH
Confidence 4455567889999999999999998321111 1111 7999999999999998874
No 160
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=95.89 E-value=0.0031 Score=52.74 Aligned_cols=52 Identities=17% Similarity=-0.070 Sum_probs=40.5
Q ss_pred eeeeecCCCCC-CChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAG-SSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~-~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++.. .|.++|.++|..+|..... . +.+|.+||+|.++|+|+++++
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v----~------i~~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGC----S------VHKGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEE----E------EETTEEEEECSSSHHHHHHHH
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEE----E------EeCCEEEEEECCHHHHHHHHH
Confidence 34555678888 9999999999999832111 1 168999999999999999874
No 161
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.88 E-value=0.0032 Score=57.01 Aligned_cols=59 Identities=12% Similarity=-0.223 Sum_probs=43.0
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... -++ ......+|.+||+|.++|+|+++++
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~---i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 88 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSID---MSWDSVTMKHKGFAFVEYEVPEAAQLALE 88 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEE---ECCC-CC-CCCSEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEE---EeecCCCCccCceEEEEeCCHHHHHHHHH
Confidence 3455567889999999999999998322111 112 2346689999999999999999875
No 162
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.88 E-value=0.0032 Score=53.88 Aligned_cols=54 Identities=9% Similarity=-0.049 Sum_probs=40.0
Q ss_pred eeeeecCCCC-CCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPA-GSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~-~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++..-+++. ..|.++|.++|..||-..... -++ .+|.+||||.++|+|+++++
T Consensus 16 ~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~---i~~-----~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 16 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHL---ILN-----KINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CEEEEESCCCSSSHHHHHHTTTGGGSCEEEEE---ECS-----SSSCEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEE---EEc-----CCCEEEEEECCHHHHHHHHH
Confidence 3455567888 999999999999998422221 111 24789999999999998764
No 163
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=95.87 E-value=0.0031 Score=52.19 Aligned_cols=53 Identities=9% Similarity=-0.173 Sum_probs=40.5
Q ss_pred ceeeeecCCCC-CCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPA-GSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~-~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++. ..|.++|.++|..+|...... + .+|.+||+|.++|+|+++++
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~----i------~~g~afV~f~~~~~A~~Ai~ 75 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQIN----I------KNAFGFIQFDNPQSVRDAIE 75 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEE----E------CSSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEE----E------eCCEEEEEECCHHHHHHHHH
Confidence 34455567887 999999999999998422111 1 27999999999999999875
No 164
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.002 Score=55.52 Aligned_cols=56 Identities=13% Similarity=-0.117 Sum_probs=40.5
Q ss_pred eeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCC
Q 008981 486 ESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEP 544 (547)
Q Consensus 486 V~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~ 544 (547)
+...+++...|.++|.++|+.+|...... -++......+|.+||+|.++|+|++++
T Consensus 3 l~V~nlp~~~t~~~l~~~f~~~G~i~~v~---i~~~~~~~~~g~afV~f~~~~~a~~A~ 58 (166)
T 3md3_A 3 LYVGNLDKAITEDILKQYFQVGGPIANIK---IMIDKNNKNVNYAFVEYHQSHDANIAL 58 (166)
T ss_dssp EEEEEEETTCCHHHHHHHHGGGSCEEEEE---EECCCC-CCEEEEEEEESSHHHHHHHH
T ss_pred EEECCCCCcCCHHHHHHHHHhcCCeEEEE---EEECCCCCCCCEEEEEeCCHHHHHHHH
Confidence 44445788999999999999998422111 122223447899999999999999887
No 165
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.84 E-value=0.0082 Score=57.29 Aligned_cols=89 Identities=6% Similarity=-0.067 Sum_probs=61.6
Q ss_pred cCHHHHHHHHhcCCcEEEcCCeEeeCCcccccCCCCCCceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCC
Q 008981 445 SNIQLILDSLRTSTVVEVQDDRVRRRNEWMKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNA 523 (547)
Q Consensus 445 ~d~~lI~eALr~S~~LEVsgdKVRRr~~w~kwvp~~~r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~ 523 (547)
.+.+....||+.....++.+.+|+-. |-+.. .++...+++...|.++|.++|..+|...... -++ ...
T Consensus 65 ~~~~~A~~A~~~l~~~~~~g~~i~v~-----~~~~~---~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~---i~~~~~~ 133 (284)
T 3smz_A 65 LNGEQAEAAINAFHQSRLRERELSVQ-----LQPTD---ALLCVANLPPSLTQQQFEELVRPFGSLERCF---LVYSERT 133 (284)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEE-----ECCCS---CEEEEESCCTTCCHHHHHHHHGGGSCEEEEE---EEECTTT
T ss_pred CCHHHHHHHHHHcCCCeeCCeEEEEE-----ecCCC---CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEE---EEeeCCC
Confidence 46778888887766666777655432 22222 2345557889999999999999998422211 122 335
Q ss_pred cccCCcccEEcCChhhhhcCC
Q 008981 524 NCHCEDAPGIHSSEGEATEEP 544 (547)
Q Consensus 524 k~f~GsvfVEFsSeEeAkk~~ 544 (547)
...+|.+||+|.++|+|++++
T Consensus 134 g~~~g~afV~f~~~~~a~~A~ 154 (284)
T 3smz_A 134 GQSKGYGFAEYMKKDSAARAK 154 (284)
T ss_dssp CCEEEEEEEEESSHHHHHHHH
T ss_pred CccceEEEEEECCHHHHHHHH
Confidence 678899999999999999886
No 166
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=95.83 E-value=0.0018 Score=53.77 Aligned_cols=60 Identities=8% Similarity=-0.150 Sum_probs=43.1
Q ss_pred eeeeecCCCC------CCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPA------GSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~------~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...++|. ..+.++|.++|..+|...... ......+...+|.+||+|.+.|+|+++++
T Consensus 7 ~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~--i~~d~~tg~~kG~afV~f~~~~~A~~Ai~ 72 (100)
T 3ns6_A 7 QYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNME--FPIDEATGKTKGFLFVECGSMNDAKKIIK 72 (100)
T ss_dssp GEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEE--CCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred cEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEE--EEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 3455556777 888999999999998322111 11113346789999999999999998874
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.81 E-value=0.0031 Score=54.73 Aligned_cols=58 Identities=12% Similarity=-0.083 Sum_probs=42.9
Q ss_pred eeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++...|.++|.++|+.+|-..... -.+ ......+|.+||+|.++|+|+++++
T Consensus 5 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~---i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 63 (168)
T 1b7f_A 5 NLIVNYLPQDMTDRELYALFRAIGPINTCR---IMRDYKTGYSYGYAFVDFTSEMDSQRAIK 63 (168)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEE---CCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEE---EEEeCCCCccceEEEEEECCHHHHHHHHH
Confidence 345557889999999999999998321111 111 2356688999999999999998874
No 168
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.80 E-value=0.0033 Score=50.58 Aligned_cols=51 Identities=12% Similarity=-0.089 Sum_probs=38.9
Q ss_pred eeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++...|.++|.++|+.+|..... ++.++.+||+|.++|+|+++++
T Consensus 11 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~----------~~~~~~afV~f~~~~~a~~A~~ 61 (90)
T 2dnp_A 11 KIFVGNVSAACTSQELRSLFERRGRVIEC----------DVVKDYAFVHMEKEADAKAAIA 61 (90)
T ss_dssp CEEEESCCTTCCHHHHHHHHHHHSCEEEE----------EECSSCEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCCEEEE----------EEECCEEEEEECCHHHHHHHHH
Confidence 44555678899999999999999842111 1225599999999999998864
No 169
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.80 E-value=0.002 Score=56.79 Aligned_cols=60 Identities=8% Similarity=-0.112 Sum_probs=45.1
Q ss_pred CceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 482 RISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 482 r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
...++...+++...|.++|.++|..++.... ..++ ......+|.+||+|.++|+|+++++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~----~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 72 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKND----LAVVDVRTGTNRKFGYVDFESAEDLEKALE 72 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHT----CCCCEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcce----EEEEECCCCccccEEEEEECCHHHHHHHHh
Confidence 3455666678999999999999999974322 1122 2345678999999999999999874
No 170
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.77 E-value=0.0035 Score=51.34 Aligned_cols=54 Identities=15% Similarity=-0.005 Sum_probs=40.2
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..++...+ . .+ +..+|.+||+|.++|+|+++++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~g~v-~---~~----~~~~g~afV~f~~~~~A~~A~~ 69 (99)
T 2cpd_A 16 KILYVRNLMLSTSEEMIEKEFNNIKPGAV-E---RV----KKIRDYAFVHFSNREDAVEAMK 69 (99)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSTTCE-E---EE----EECSSEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcce-E---EE----EEeCCeEEEEeCCHHHHHHHHH
Confidence 44555678899999999999999942111 1 11 2347899999999999999875
No 171
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.76 E-value=0.004 Score=52.80 Aligned_cols=54 Identities=15% Similarity=0.010 Sum_probs=40.6
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... +. ..+|.+||+|.+.|+|+++++
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~----i~----~~~g~afV~f~~~~~A~~Ai~ 64 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVL----LP----EGGITAIVEFLEPLEARKAFR 64 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEE----CC----SSSSCEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE----Ee----CCCCEEEEEeCCHHHHHHHHH
Confidence 3455567889999999999999998421111 11 256889999999999998764
No 172
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.0037 Score=51.09 Aligned_cols=52 Identities=10% Similarity=-0.188 Sum_probs=39.9
Q ss_pred eeeeecCCCC-CCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPA-GSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~-~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++. ..|.++|.++|..+|...... +.+|.+||+|.++|+|+++++
T Consensus 11 ~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~----------i~~g~afV~f~~~~~A~~A~~ 63 (96)
T 2kvi_A 11 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQIN----------IKNAFGFIQFDNPQSVRDAIE 63 (96)
T ss_dssp EEEEEESSTTSCCCHHHHHHHHTTTCCCCEEE----------EETTEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEE----------EeCCEEEEEECCHHHHHHHHH
Confidence 3455557787 999999999999998422111 137999999999999998875
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=95.72 E-value=0.0032 Score=55.02 Aligned_cols=60 Identities=15% Similarity=-0.057 Sum_probs=41.3
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccc-----ccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAV-----NQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~-----~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+++...+++...|.++|.++|+.+|...... .+..++. ...+|.+||+|.++|+|+++++
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~--~~~~g~afV~f~~~~~A~~A~~ 69 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAMA 69 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE--ETTTTEEEEEESSHHHHHHHGG
T ss_pred cEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe--cCCCCEEEEEeCCHHHHHHHHH
Confidence 3455557889999999999999994211100 1111111 2338999999999999999874
No 174
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=95.66 E-value=0.0029 Score=56.51 Aligned_cols=60 Identities=15% Similarity=-0.036 Sum_probs=41.7
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccc-----ccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAV-----NQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~-----~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+++...+++...|.++|.++|..+|...... .+..++ ....+|.+||+|.++|+|+++|+
T Consensus 5 ~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~--~~~~~g~afV~F~~~~~A~~Al~ 69 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ--INQDKNFAFLEFRSVDETTQAMA 69 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEE--EETTTTEEEEEESCSHHHHHHGG
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeE--ecCCCCEEEEEeCCHHHHHHHHH
Confidence 4455567889999999999999994211100 111111 13347999999999999999884
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.63 E-value=0.0031 Score=54.34 Aligned_cols=58 Identities=10% Similarity=-0.095 Sum_probs=43.0
Q ss_pred eeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++...|.++|.++|+.+|...... -++ ......+|.+||+|.++|+|+++++
T Consensus 4 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~---~~~~~~~~~~~g~afV~f~~~~~A~~a~~ 62 (167)
T 1fxl_A 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCK---LVRDKITGQSLGYGFVNYIDPKDAEKAIN 62 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeEEEE---EEeCCCCCcceeEEEEEECCHHHHHHHHH
Confidence 345557889999999999999998322111 112 2356678999999999999999874
No 176
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=95.58 E-value=0.0039 Score=57.81 Aligned_cols=60 Identities=7% Similarity=-0.162 Sum_probs=45.0
Q ss_pred ceeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++..-+++...|.++|.++|+.+|-..... -++ ......+|.+||+|.++|+|+++++
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~---i~~d~~tg~~~G~afV~F~~~~~A~~Ai~ 75 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIR---VCRDMITRRSLGYAYVNFQQPADAERALD 75 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE---EEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEE---EecccCCCCccccccceeCCHHHHHHHHH
Confidence 34566667899999999999999998322111 112 3456788999999999999999874
No 177
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=95.51 E-value=0.0045 Score=55.68 Aligned_cols=60 Identities=10% Similarity=-0.107 Sum_probs=44.2
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|-..... ..........+|.+||+|.+.++|+++++
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~--i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIH--LNLDRRTGFSKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--EEECTTTSSEEEEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE--EEecCCCCcEeeEEEEEECCHHHHHHHHH
Confidence 4466667889999999999999998321111 11112356678999999999999998874
No 178
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.44 E-value=0.0044 Score=50.17 Aligned_cols=58 Identities=16% Similarity=0.077 Sum_probs=38.8
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++...+++...|.++|.++|..+|....... +..+ ...|.+||+|.++|+|+++++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~---i~~~--~~~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQ---VNTD--SETAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEE---ECCS--SSSEEEEEEESSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEE---eecC--CCCCEEEEEECCHHHHHHHHH
Confidence 344555567889999999999999984222100 1111 112229999999999998764
No 179
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.41 E-value=0.0094 Score=57.13 Aligned_cols=96 Identities=9% Similarity=-0.070 Sum_probs=58.1
Q ss_pred CHHHHHHHHhcCCcEEEcCCeEe--eCCcccccC---CCCCCceeeeecCCCCC-CChhhhhhhcccccccccccccccc
Q 008981 446 NIQLILDSLRTSTVVEVQDDRVR--RRNEWMKWI---ATPGRISTESGLSSPAG-SSVDVLAPSFQNITVKEGAVNQRSL 519 (547)
Q Consensus 446 d~~lI~eALr~S~~LEVsgdKVR--Rr~~w~kwv---p~~~r~~tV~g~~~p~~-~T~d~L~~~F~~~gle~~~~~~~s~ 519 (547)
+.+....||+...-.++.+.+|+ ....-.+.. .......++...+++.. .|.++|.++|..+|...... -+
T Consensus 168 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~---i~ 244 (292)
T 2ghp_A 168 SKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKIN---IP 244 (292)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEE---CC
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEE---EE
Confidence 56677777776666667665433 221111110 01112233444567788 99999999999998422211 12
Q ss_pred cCCC--cccCCcccEEcCChhhhhcCC
Q 008981 520 TGNA--NCHCEDAPGIHSSEGEATEEP 544 (547)
Q Consensus 520 R~~~--k~f~GsvfVEFsSeEeAkk~~ 544 (547)
+... ...+|.+||+|.+.|+|++++
T Consensus 245 ~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 245 AGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp SCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 2222 677899999999999999987
No 180
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=95.26 E-value=0.0027 Score=55.47 Aligned_cols=62 Identities=8% Similarity=-0.209 Sum_probs=43.6
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccc--ccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGA--VNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~--~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|..... .....++ ......+|.+||+|.+.|+|+++++
T Consensus 46 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~ 110 (143)
T 3egn_A 46 CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALK 110 (143)
T ss_dssp SEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHH
Confidence 445555678899999999999999843221 0001111 1245678999999999999998864
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.19 E-value=0.006 Score=58.49 Aligned_cols=59 Identities=8% Similarity=-0.102 Sum_probs=42.1
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
.++...+++...|.++|.++|..+|...... +..+....+|.+||+|.++|+|+++++.
T Consensus 42 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~----i~~~~~~~~g~afV~f~~~~~A~~A~~~ 100 (292)
T 2ghp_A 42 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVD----VADSLKKNFRFARIEFARYDGALAAITK 100 (292)
T ss_dssp CEEEEEEECTTCCHHHHHHHHGGGSCEEEEE----EEECTTSSSEEEEEEESSHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE----EEECCCCCcEEEEEEECCHHHHHHHHHh
Confidence 4455556788999999999999998322111 1111122379999999999999998854
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=95.09 E-value=0.014 Score=54.74 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=41.0
Q ss_pred eeeecCCCCCCChhhhhhhcccccccc-cccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKE-GAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~-~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++...|.++|.++|+.+|-.. ... .+-.+....+|.+||||.++|||+++|.
T Consensus 125 ~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v---~~~~~~~~~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 125 VLHFFNAPLEVTEENFFEICDELGVKRPTSV---KVFSGKSERSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHTCCCCSEE---EECSCCSSSSEEEEEECSSHHHHHHHHH
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCcceEEE---EEEcCCCCCceEEEEEeCCHHHHHHHHH
Confidence 455567888999999999999998421 111 1112222345999999999999998864
No 183
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.05 E-value=0.0096 Score=53.68 Aligned_cols=54 Identities=11% Similarity=-0.132 Sum_probs=39.4
Q ss_pred eeeecCCCC-CCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPA-GSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~-~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++. ..|.++|.++|..+|..... .+..+. +|.+||+|.++|+|+++++
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v----~i~~~~---~g~afV~f~~~~~a~~A~~ 59 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFGVYGDVQRV----KILFNK---KENALVQMADGNQAQLAMS 59 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHHTTCCCSEE----ECSTTC---SSCCEEECTTTHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEE----EEEeCC---CCEEEEEECCHHHHHHHHH
Confidence 344456788 89999999999999842111 111211 7899999999999998874
No 184
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.04 E-value=0.0081 Score=63.11 Aligned_cols=59 Identities=8% Similarity=-0.166 Sum_probs=44.6
Q ss_pred eeeeecCCCCCCChhhhhhhccccccccccccccccc-CCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLT-GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R-~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.+|...+++...|.++|.++|..||....+. -+. ......+|.+||+|.++|+|+++|+
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~---i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 162 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIH---MVYSKRSGKPRGYAFIEYEHERDMHSAYK 162 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEE---eeccCCCCCccceEEEeeccHHHHHHHHH
Confidence 4566667889999999999999998422211 111 2356789999999999999999874
No 185
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.04 E-value=0.007 Score=51.60 Aligned_cols=46 Identities=22% Similarity=0.048 Sum_probs=35.2
Q ss_pred CCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 493 AGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 493 ~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
...|.++|.++|..+|-..... +. +..+|.+||||.++|+|+++++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~----i~---~~~rGfaFVeF~~~~~A~~Ai~ 72 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLV----LS---SKKPGTAVVEFATVKAAELAVQ 72 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEE----EE---SSSSSEEEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCEEEEE----Ec---cCCCCEEEEEECCHHHHHHHHH
Confidence 5678999999999998422211 11 3568999999999999998875
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=94.97 E-value=0.0077 Score=56.45 Aligned_cols=55 Identities=13% Similarity=-0.116 Sum_probs=40.6
Q ss_pred eeeeecCCCC-CCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPA-GSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~-~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++. ..|.++|.++|+.+|..... .+..+. +|.+||+|.++|+|+++++
T Consensus 35 ~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v----~i~~~~---~g~afV~F~~~~~A~~Ai~ 90 (229)
T 2adc_A 35 SVLLVSNLNPERVTPQSLFILFGVYGDVQRV----KILFNK---KENALVQMADGNQAQLAMS 90 (229)
T ss_dssp SEEEEESCCTTTCCHHHHHHHHHHHTCEEEE----EECCTT---SCCEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhCCCeEEE----EEEECC---CCEEEEEECCHHHHHHHHH
Confidence 4455567888 89999999999999842111 111222 7899999999999998874
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=94.97 E-value=0.012 Score=56.14 Aligned_cols=59 Identities=14% Similarity=-0.122 Sum_probs=43.3
Q ss_pred CceeeeecCCCCCCChhhhh----hhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 482 RISTESGLSSPAGSSVDVLA----PSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 482 r~~tV~g~~~p~~~T~d~L~----~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..+++...+++...|.++|+ ++|..+|...... -.+ ....+|.+||+|.++|+|+++++
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~---~~~--~~~~~g~afV~f~~~~~a~~A~~ 70 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIL---VSR--SLKMRGQAFVIFKEVSSATNALR 70 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEE---EcC--CCCcceEEEEEECCHHHHHHHHH
Confidence 34556666788999999966 8999998422211 112 34578999999999999999873
No 188
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.92 E-value=0.0078 Score=52.93 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=37.2
Q ss_pred cCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 489 LSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 489 ~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
-+++...|.++|++.|+.+|.... .. +.. .+|.+||+|.++|||+++++
T Consensus 33 g~L~~~~te~~L~~~F~~fG~v~~-v~---i~~----~rgfaFV~f~~~~~A~~Ai~ 81 (114)
T 2cq2_A 33 GGLGNGVSRNQLLPVLEKCGLVDA-LL---MPP----NKPYSFARYRTTEESKRAYV 81 (114)
T ss_dssp CTGGGTCCHHHHHHHHHHHSCEEE-EE---CCT----TCSCEEEEESSHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHhcCCeEE-EE---EeC----CCCEEEEEECCHHHHHHHHH
Confidence 457788999999999999993222 11 111 27899999999999998764
No 189
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.79 E-value=0.0093 Score=52.90 Aligned_cols=53 Identities=17% Similarity=-0.103 Sum_probs=38.8
Q ss_pred eeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCc-ccEEcCChhhhhcCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCED-APGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~Gs-vfVEFsSeEeAkk~~~ 545 (547)
.+...+++...|.++|.+.|..+|-...+.- ++ + .|. +||||.++|+|+++++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i---~~---~--~Gf~aFVef~~~~~A~~A~~ 80 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVI---FK---R--NGIQAMVEFESVLCAQKAKA 80 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEE---EE---S--SSEEEEEEESSHHHHHHHHH
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEE---Ee---C--CCCEEEEEECCHHHHHHHHH
Confidence 3445578899999999999999984322221 11 1 275 9999999999998764
No 190
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=94.65 E-value=0.008 Score=51.34 Aligned_cols=49 Identities=10% Similarity=-0.149 Sum_probs=37.9
Q ss_pred cCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 489 LSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 489 ~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
-++....|.++|.+.|..+|-... ++- ...+|.+||||.++|||+++++
T Consensus 13 gNL~~~~te~~L~~lF~q~G~V~~------~~l--~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 13 KNLTAQIDGPTLRTLCMQHGPLVS------FHP--YLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp ECCCTTCCCHHHHHHHHHHSCEEE------EEE--ETTTTEEEEEESSHHHHHHHHH
T ss_pred eCCCccCCHHHHHHHHHhhCCEEE------EEE--cCCCcEEEEEECCHHHHHHHHH
Confidence 467788999999999999984222 111 2369999999999999998754
No 191
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.51 E-value=0.015 Score=47.43 Aligned_cols=44 Identities=9% Similarity=-0.083 Sum_probs=34.5
Q ss_pred CCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 494 GSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 494 ~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..|.++|.++|..+|...... + ...+|.+||+|.++|+|+++++
T Consensus 24 ~~t~~~l~~~F~~~G~i~~v~----i----~~~~g~afV~f~~~~~a~~Ai~ 67 (97)
T 1x5p_A 24 DMTPTLLRGAFSPFGNIIDLS----M----DPPRNCAFVTYEKMESADQAVA 67 (97)
T ss_dssp SCCHHHHHHHHTTTSCEEEEE----E----ETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHhhCCCEEEEE----e----cCCCCEEEEEECCHHHHHHHHH
Confidence 789999999999998322111 1 2467899999999999999874
No 192
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=94.47 E-value=0.0093 Score=53.64 Aligned_cols=55 Identities=13% Similarity=-0.084 Sum_probs=39.9
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCc-ccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCED-APGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~Gs-vfVEFsSeEeAkk~~~ 545 (547)
..+...+++...|.++|.+.|..+|-...+.- .+ + .+|. +||||.++|+|+++++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i---~~---~-~~gfqAFVef~~~~~A~~Ai~ 84 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIIT---FT---K-NNQFQALLQYADPVSAQHAKL 84 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEE---EE---E-TTEEEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEE---Ec---C-CCCcEEEEEECCHHHHHHHHH
Confidence 33455677889999999999999984332221 11 1 1566 9999999999998864
No 193
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=94.30 E-value=0.025 Score=48.15 Aligned_cols=50 Identities=6% Similarity=-0.162 Sum_probs=33.7
Q ss_pred CChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 495 SSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 495 ~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.+.++|.+.|+++|-..... +..-+.....-+|.+||+|.++|+|+++++
T Consensus 25 d~~~dl~~~f~~~G~V~~v~-i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~ 74 (105)
T 2pe8_A 25 DLEVETKEECEKYGKVGKCV-IFEIPGAPDDEAVRIFLEFERVESAIKAVV 74 (105)
T ss_dssp -CHHHHHHHGGGGSCEEEEE-EEECSSCCTTTSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEE-EecCCCCCCCCcEEEEEEECCHHHHHHHHH
Confidence 36789999999998422221 111111224568999999999999998764
No 194
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=94.22 E-value=0.022 Score=50.22 Aligned_cols=58 Identities=7% Similarity=-0.139 Sum_probs=40.5
Q ss_pred ceeeeecCCCCCCChhhhh----hhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLA----PSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~----~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++..-+++...+.++|+ ++|..+|-..... +.. ....+|.+||+|.++|+|+++++
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~----i~~-~~~~rG~aFV~F~~~~~A~~Ai~ 90 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIV----VDL-SDDNSGKAYIVFATQESAQAFVE 90 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEE----ECC-CCSSCCCEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEE----ecc-CCCcCCEEEEEECCHHHHHHHHH
Confidence 3445556778888888765 6899998432211 111 23568999999999999998864
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=93.79 E-value=0.018 Score=49.02 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=32.6
Q ss_pred ChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 496 SVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 496 T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++|.+.|+++|-.....-.....+.....+|.+||+|.++|+|+++++
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~ 77 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQ 77 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHH
Confidence 35789999999984222211000001123568999999999999998763
No 196
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=93.78 E-value=0.032 Score=48.26 Aligned_cols=44 Identities=9% Similarity=-0.083 Sum_probs=34.3
Q ss_pred CCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 494 GSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 494 ~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+.|.++|.++|+.+|...... + ...+|.+||+|.++|+|+++++
T Consensus 48 ~~te~~L~~~F~~~G~I~~v~----i----~~~kg~aFV~f~~~~~A~~Ai~ 91 (121)
T 2bz2_A 48 DMTPTLLRGAFSPFGNIIDLS----M----DPPRNCAFVTYEKMESADQAVA 91 (121)
T ss_dssp SCCHHHHHHHHSTTCCCSCEE----E----ETTTTEEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHccCCEEEEE----E----eCCCCEEEEEECCHHHHHHHHH
Confidence 689999999999998422211 1 1467899999999999998873
No 197
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.72 E-value=0.024 Score=49.09 Aligned_cols=48 Identities=13% Similarity=-0.106 Sum_probs=36.8
Q ss_pred eeecCCCCCCChhh----hhhhccccc-ccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 486 ESGLSSPAGSSVDV----LAPSFQNIT-VKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 486 V~g~~~p~~~T~d~----L~~~F~~~g-le~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++.-+++...+.++ |.+.|.++| ...... .|.+||+|.++|+|+++++
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------------gG~AfV~F~~~esA~~A~~ 64 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------------GCSAILRFINQDSAERAQK 64 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------------TTCEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------------cCEEEEEECCHHHHHHHHH
Confidence 55667889999887 668999994 322211 1999999999999998875
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=93.36 E-value=0.033 Score=52.24 Aligned_cols=54 Identities=7% Similarity=-0.170 Sum_probs=39.5
Q ss_pred eeeecCCC-CCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 485 TESGLSSP-AGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 485 tV~g~~~p-~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++...+++ ...|.++|.+.|..+|-..... -++ + .+|.+||||.++|+|+++++
T Consensus 6 ~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~---i~~-~---~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 6 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVK---FMK-S---KPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp EEEEECCCTTTCCHHHHHHHHTTTSCEEEEE---ECT-T---STTCEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCeEEEE---Eec-C---CCCEEEEEECCHHHHHHHHH
Confidence 44455677 7899999999999998422211 111 1 26999999999999998764
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=93.23 E-value=0.041 Score=52.65 Aligned_cols=54 Identities=9% Similarity=-0.139 Sum_probs=41.1
Q ss_pred eeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 484 STESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 484 ~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++...+++...|.++|.++|..+|...... + ...+|.+||+|.++|+|+++++
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~----i----~~~kg~afV~f~~~~~A~~A~~ 76 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVF----I----NRDRGFGFIRLESRTLAEIAKA 76 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSEEE----E----ETTTTEEEEECSSHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEE----E----eCCCcEEEEEECCHHHHHHHHH
Confidence 4566667899999999999999998422211 1 1237999999999999998864
No 200
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=93.17 E-value=0.024 Score=58.39 Aligned_cols=55 Identities=11% Similarity=-0.019 Sum_probs=39.4
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..+|-..++....|.++|++.|.++|-... ++-.. .+|.+||||.++|||+++++
T Consensus 20 ~l~VgN~gl~~~~te~~L~~~F~~~G~V~~------v~~~~--~kgfaFV~f~~~~~A~~Ai~ 74 (345)
T 3tht_A 20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDA------LLMPP--NKPYSFARYRTTEESKRAYV 74 (345)
T ss_dssp EEEEETCSGGGTCCHHHHHHHHHTTSCEEE------EECCT--TCSEEEEEESSHHHHHHHHH
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCeEE------EEEeC--CCCEEEEEECCHHHHHHHHH
Confidence 344433445678999999999999984322 11111 47999999999999998864
No 201
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.96 E-value=0.019 Score=48.41 Aligned_cols=43 Identities=12% Similarity=-0.152 Sum_probs=31.3
Q ss_pred hhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 497 VDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 497 ~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++|.+.|.++|-.... .+.. +..+|.+||+|.++|+|+++++
T Consensus 40 e~~l~~~f~~~G~v~~v----~i~~--~~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 40 REDLRVECSKFGQIRKL----LLFD--RHPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp HHHHHHHGGGTSCCSEE----EEET--TCTTCEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHccCCEeEE----EEec--CCCCEEEEEEECCHHHHHHHHH
Confidence 47899999999842222 1111 2268999999999999998763
No 202
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=91.96 E-value=0.04 Score=47.91 Aligned_cols=43 Identities=9% Similarity=-0.187 Sum_probs=30.0
Q ss_pred hhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 497 VDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 497 ~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++|.+.|+++|-..... -.|. .-+|.+||+|.++|+|+++++
T Consensus 31 ~edl~~~f~kfG~V~~v~---i~~~---~~~G~~fV~f~~~e~A~~Ai~ 73 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIY---VDKN---SAQGNVYVKCPSIAAAIAAVN 73 (114)
T ss_dssp HHHHHHHHTTTTCCSEEE---ECTT---CTTCCEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHhccCCEEEEE---EecC---CCcEEEEEEECCHHHHHHHHH
Confidence 467899999998432211 0111 138999999999999998753
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=91.20 E-value=0.044 Score=46.37 Aligned_cols=45 Identities=7% Similarity=-0.068 Sum_probs=29.3
Q ss_pred hhhhhhc-ccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 498 DVLAPSF-QNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 498 d~L~~~F-~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
++|.+.| +++|-..... -.+.....-+|.+||+|.++|+|+++++
T Consensus 41 edl~~~f~~~~G~V~~v~---i~~~~~~~~~G~~fV~f~~~~~A~~A~~ 86 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMN---VCDNLGDHLVGNVYVKFRREEDAEKAVI 86 (104)
T ss_dssp HHHHHHHHHHTCCEEEEE---ECCSSSSSSEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhhccCCceEEEE---EEeCCCCCccEEEEEEECCHHHHHHHHH
Confidence 4555556 8887422221 1222234568999999999999998764
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=88.78 E-value=0.076 Score=46.38 Aligned_cols=49 Identities=6% Similarity=-0.090 Sum_probs=31.9
Q ss_pred hhhhhhhcccccccccccccccccC--CCcccCCcccEEcCChhhhhcCCC
Q 008981 497 VDVLAPSFQNITVKEGAVNQRSLTG--NANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 497 ~d~L~~~F~~~gle~~~~~~~s~R~--~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++|.+.|+++|-.....-.....+ ....-+|.+||+|.++|+|+++++
T Consensus 39 eedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~ 89 (118)
T 3ue2_A 39 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQ 89 (118)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHH
Confidence 5889999999984322211000011 123456999999999999998754
No 205
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=88.58 E-value=0.42 Score=45.56 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=36.4
Q ss_pred cCCCCcEEehhhccchhhh--hcccCHHHHHHHHhcCC--cEEEcCCeEeeCC
Q 008981 423 MDDQGWVPITLIASFPRVK--NLTSNIQLILDSLRTST--VVEVQDDRVRRRN 471 (547)
Q Consensus 423 Md~qG~VPLs~IasFnRVK--~Lt~d~~lI~eALr~S~--~LEVsgdKVRRr~ 471 (547)
||++|||+|+.|+.+ +.+ ...-+.+.|.++++..+ -.|+++++||-+.
T Consensus 24 ld~~G~v~v~~LL~~-~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~~~IRA~q 75 (186)
T 1wfx_A 24 LTREGWARVSEVVEG-LRKAGWSWVEEWHIVGVALHDPKGRYELRNGEIRARY 75 (186)
T ss_dssp CCTTCCEEHHHHHHH-HHHTTCTTCCHHHHHHHHHHCSSCCEEEETTEEEESS
T ss_pred cCCCCCEEHHHHHhh-hhhcccCCCCHHHHHHHHhcCCCCceEeeccEEEecc
Confidence 689999999999983 333 23346888888888765 4788899999754
No 206
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=87.28 E-value=0.16 Score=49.80 Aligned_cols=41 Identities=5% Similarity=-0.178 Sum_probs=31.2
Q ss_pred ChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCC
Q 008981 496 SVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEP 544 (547)
Q Consensus 496 T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~ 544 (547)
|.++|.+.|+.+|-.+.... + ..+|.+||+|.++|+|++++
T Consensus 156 tEe~L~~~F~~fG~I~~v~v---~-----~~kG~AFV~F~~~~~Ae~A~ 196 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRY---V-----ESKNCGFVKFKYQANAEFAK 196 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEE---E-----GGGTEEEEEESSHHHHHHHH
T ss_pred cHHHHHHHHHccCCEEEEEE---E-----CCCCEEEEEeCCHHHHHHHH
Confidence 68999999999984322221 1 13799999999999998775
No 207
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=86.00 E-value=0.18 Score=46.25 Aligned_cols=43 Identities=7% Similarity=-0.228 Sum_probs=31.6
Q ss_pred CCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCC
Q 008981 492 PAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSS 536 (547)
Q Consensus 492 p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsS 536 (547)
+...+.+.|.++|..||- +..-.+.+-..+...+|.+||||.+
T Consensus 15 ~~~tte~~Lk~~Fs~fGe--V~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 15 TTNIQDISIKNYFKKYGE--ISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCCCCHHHHHHHHHTTSC--CSEEEEEECTTTCCEEEEEEEECC-
T ss_pred CCCCCHHHHHHHHHhcCC--eEEEEEEecCCCCceeeEEEEEECC
Confidence 788899999999999982 1111122225678899999999997
No 208
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=84.87 E-value=0.86 Score=52.68 Aligned_cols=82 Identities=20% Similarity=0.385 Sum_probs=63.0
Q ss_pred cHHHHHHHHHhhhhhcCcCcccccchhhhcc--------CCCCcEEehhhccc-hhhhhccc--------C----HHHHH
Q 008981 393 EPSLAAMLIHQIDYYFSDANLVKDEFLKSNM--------DDQGWVPITLIASF-PRVKNLTS--------N----IQLIL 451 (547)
Q Consensus 393 d~~L~~~I~kQVEYYFSDeNL~kD~FLr~~M--------d~qG~VPLs~IasF-nRVK~Lt~--------d----~~lI~ 451 (547)
.++.-+.|+.+|+|.|+|+=|.-+.=|..++ |--|.||+.+|+.+ -||-.+++ | +.+|.
T Consensus 104 ~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~ 183 (950)
T 3htx_A 104 VDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISYVM 183 (950)
T ss_dssp HHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHHHH
Confidence 3577788999999999999998888777776 25789999999999 45655543 2 56777
Q ss_pred HHHhcC-CcEEEcCCeEeeCCccc
Q 008981 452 DSLRTS-TVVEVQDDRVRRRNEWM 474 (547)
Q Consensus 452 eALr~S-~~LEVsgdKVRRr~~w~ 474 (547)
.|.+.+ ..+..++..|||.+++.
T Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~~~ 207 (950)
T 3htx_A 184 KAAAKLADYIVASPHGLRRKNAYP 207 (950)
T ss_dssp HHHHHCCSSEEEETTEEEESSCCC
T ss_pred HHhhcCCCcEEeCCcccccCCCCC
Confidence 787776 55545567999998754
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=79.40 E-value=0.4 Score=44.53 Aligned_cols=50 Identities=4% Similarity=-0.151 Sum_probs=32.9
Q ss_pred Chhhhhhhccccccccccccccccc--CCCcccCCcccEEcCChhhhhcCCC
Q 008981 496 SVDVLAPSFQNITVKEGAVNQRSLT--GNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 496 T~d~L~~~F~~~gle~~~~~~~s~R--~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
..++|.+.|.++|-........... .....-+|.+||||.++|+|+++++
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~ 193 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQ 193 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHH
Confidence 4578999999998432222111111 2233668999999999999998753
No 210
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.57 E-value=0.88 Score=40.47 Aligned_cols=51 Identities=12% Similarity=-0.051 Sum_probs=33.7
Q ss_pred eecCCCCC-CChhhhhhhcccccccccccccccccCCCcccCCcccEEcCC-hhhhhcCCC
Q 008981 487 SGLSSPAG-SSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSS-EGEATEEPN 545 (547)
Q Consensus 487 ~g~~~p~~-~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsS-eEeAkk~~~ 545 (547)
+..++... .|.++|.+.|..+|- + ..+.-.+..+ ++||||.+ +++|+++++
T Consensus 22 ~v~~l~~~~~sredLke~F~~~G~--V-~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~ 74 (121)
T 1owx_A 22 KFSGDLDDQTCREDLHILFSNHGE--I-KWIDFVRGAK-----EGIILFKEKAKEALGKAK 74 (121)
T ss_dssp EEEESCCSSCCHHHHHHHTCSSCC--E-EEEECCTTCS-----EEEEEESSCHHHHHHHHH
T ss_pred EEecCCCCcCCHHHHHHHHHhcCC--E-EEEEEecCCC-----EEEEEECCChHHHHHHHH
Confidence 33345666 899999999999972 1 1111122222 49999999 888887653
No 211
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.13 E-value=0.75 Score=39.43 Aligned_cols=39 Identities=10% Similarity=-0.053 Sum_probs=28.6
Q ss_pred hhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 497 VDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 497 ~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+.+|...|..+|-. . .+ +...+..||+|.++|.|.++++
T Consensus 29 ~~~L~~~F~~~G~V-i-----~v----r~~~d~~fVtF~d~~sAlaAi~ 67 (91)
T 2dnr_A 29 IDELLQQFASFGEV-I-----LI----RFVEDKMWVTFLEGSSALNVLS 67 (91)
T ss_dssp HHHHHHHHHTTCCE-E-----EE----EECSSSEEEEESSHHHHHHGGG
T ss_pred HHHHHHHHHhCCCe-E-----EE----EEecCCEEEEECChHHHHHHHh
Confidence 56799999999821 1 11 2333458999999999999876
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.57 E-value=2.1 Score=37.62 Aligned_cols=56 Identities=16% Similarity=0.021 Sum_probs=39.0
Q ss_pred eeeecCCCCCCChhhhhhhcccccc-cccccccccccCCCcccCCcccEEcCChhhhhcCCCC
Q 008981 485 TESGLSSPAGSSVDVLAPSFQNITV-KEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 485 tV~g~~~p~~~T~d~L~~~F~~~gl-e~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
.|...+++.....|.|+=+|++-.. ..-+. .. -+.+.+.++|+|.+.+.|+.+|+|
T Consensus 10 ~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V--~~----v~~~~~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 10 AVEVRGLPPAVPDELLTLYFENRRRSGGGPV--LS----WQRLGCGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp EEEEESCCTTSCHHHHHHHHHCTTTTCCCCE--EE----EEEETTEEEEEESSHHHHHHHHTC
T ss_pred EEEEECCCCCCChhHheEEEeCCCcCCCcee--eE----EEEcCCcEEEEEcChHHHHHHhcC
Confidence 4555667888889999999999421 00011 11 122338899999999999999987
No 213
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.59 E-value=1.3 Score=38.26 Aligned_cols=39 Identities=5% Similarity=-0.114 Sum_probs=27.1
Q ss_pred hhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 497 VDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 497 ~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+.+|...|..+|- . ..+| ...+..||+|.++|+|.++++
T Consensus 38 ~~~L~~~F~~~G~-V-----ilvr----~v~d~~fVtF~d~~sAl~AI~ 76 (95)
T 1ufw_A 38 RTELMQTLGSYGT-I-----VLVR----INQGQMLVTFADSHSALSVLD 76 (95)
T ss_dssp HHHHHHHHHHHSC-C-----SEEE----EETTEEEEECSCSHHHHHHHH
T ss_pred HHHHHHHHHHCCC-E-----EEEE----EecCcEEEEEcChHHHHHHHh
Confidence 4668899999982 1 1122 223339999999999988764
No 214
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=50.06 E-value=9.3 Score=34.14 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhhhcCcCcccccchhhhccCCCCcEE--ehhhccchhhhhcccCHHHHHHHHhcC
Q 008981 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVP--ITLIASFPRVKNLTSNIQLILDSLRTS 457 (547)
Q Consensus 395 ~L~~~I~kQVEYYFSDeNL~kD~FLr~~Md~qG~VP--Ls~IasFnRVK~Lt~d~~lI~eALr~S 457 (547)
.|.+.|..||...|++.-..-=.||...+|++||+. +..|+. .|..+.+.|.++|+.-
T Consensus 4 sL~e~L~~Ql~~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~-----~l~~~~~eve~vL~~i 63 (130)
T 2k9m_A 4 SELEELQQNIKLELEGKEQELALELLNYLNEKGFLSKSVEEISD-----VLRCSVEELEKVRQKV 63 (130)
T ss_dssp CHHHHHHHHHHHHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHH-----HTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHH-----HcCCCHHHHHHHHHHH
Confidence 678899999995566655445578889999999974 445543 2234666666666543
No 215
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=49.41 E-value=16 Score=29.48 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=37.6
Q ss_pred HHHHHHhhhhhcCcCcccccchhhhccCCCCcEE--ehhhccchhhhhcccCHHHHHHHHh
Q 008981 397 AAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVP--ITLIASFPRVKNLTSNIQLILDSLR 455 (547)
Q Consensus 397 ~~~I~kQVEYYFSDeNL~kD~FLr~~Md~qG~VP--Ls~IasFnRVK~Lt~d~~lI~eALr 455 (547)
.+.|..||...|++.-..-=.||...+|++||+. +..|+. .|..+.+.|.++|+
T Consensus 15 ~ehL~~Ql~~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~-----~l~~~~~eve~vL~ 70 (76)
T 2k9l_A 15 LEELQQNIKLELEGKEQELALELLNYLNEKGFLSKSVEEISD-----VLRCSVEELEKVRQ 70 (76)
T ss_dssp HHHHHHHHHHHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHH-----HHTSCHHHHHHHHH
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHH-----HcCCCHHHHHHHHH
Confidence 7889999995566655545578899999999974 555553 22346666666665
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=43.38 E-value=11 Score=32.88 Aligned_cols=53 Identities=13% Similarity=-0.075 Sum_probs=39.8
Q ss_pred CceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 482 RISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 482 r~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
+.++.+. .||......+|+..|..|| . ..+ + =+...+|||-|.+.|.|+.+|+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fg-g-v~I-----~---WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFG-N-IQI-----S---WIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTC-S-CCC-----E---EEETTEEEEECSCHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccC-C-EEE-----E---EEcCCeEEEEecCHHHHHHHHH
Confidence 4444444 7899999999999999997 1 111 1 2336789999999999998775
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=39.82 E-value=9.5 Score=34.06 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=36.1
Q ss_pred eeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCCC
Q 008981 486 ESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQN 547 (547)
Q Consensus 486 V~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~~ 547 (547)
|..++++.. ..+.+...|+++|- +.+... ..-..-+.|+|.+..+|+++|+.|
T Consensus 27 VtVFGFp~~-~~~~VL~~F~~~G~---Iv~~~~-----~~~~NWihI~Y~s~~~A~rAL~kN 79 (119)
T 1wwh_A 27 VTVFGFPQA-SASYILLQFAQYGN---ILKHVM-----SNTGNWMHIRYQSKLQARKALSKD 79 (119)
T ss_dssp EEEECCCGG-GHHHHHHHHHTTSC---EEEEEE-----CSSSSEEEEEESSHHHHHHHHTTT
T ss_pred EEEECCCHH-HHHHHHHHHHhhCc---EEEecc-----CCCCCeEEEEeCCHHHHHHHHHhC
Confidence 334445444 46778899999983 111111 234577899999999999999987
No 218
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=27.15 E-value=12 Score=32.84 Aligned_cols=52 Identities=12% Similarity=-0.141 Sum_probs=38.0
Q ss_pred ceeeeecCCCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 483 ISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 483 ~~tV~g~~~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.++.+. .||......+|+..|..+| ...+. =+...+|||-|.+.|.|+.+|+
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~---------WidDTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQIS---------WIDDTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEE---------EEETTEEEEEEEEECHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEE---------EEcCCeEEEEecCHHHHHHHHH
Confidence 333343 7899999999999999997 11111 2335689999999999988765
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=20.25 E-value=25 Score=37.75 Aligned_cols=48 Identities=8% Similarity=-0.095 Sum_probs=29.9
Q ss_pred CCCCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCC
Q 008981 491 SPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPN 545 (547)
Q Consensus 491 ~p~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~ 545 (547)
.+...+..+|.++|+.+|-.....- -+.+.-.++|||+++|++++.+.
T Consensus 60 ~~~~~~~~~l~~y~~~~g~i~~~~~-------~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 60 CPEKISENKFLKYLSQFGPINNHFF-------YESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp ECCC---CHHHHHHGGGSCCCCEEE-------ECSSSEEEEEECC---CCHHHHS
T ss_pred cCCCCCHHHHHHHHHhcCCcceEEE-------EccCCeEEEEEeCCHHHHHHHHh
Confidence 3778999999999999995332221 12444789999999999987754
No 220
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=24.47 E-value=24 Score=30.62 Aligned_cols=52 Identities=19% Similarity=0.099 Sum_probs=35.9
Q ss_pred CCCChhhhhhhcccccccccccccccccCCCcccCCcccEEcCChhhhhcCCCC
Q 008981 493 AGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCHCEDAPGIHSSEGEATEEPNQ 546 (547)
Q Consensus 493 ~~~T~d~L~~~F~~~gle~~~~~~~s~R~~~k~f~GsvfVEFsSeEeAkk~~~~ 546 (547)
...+.++|..|..+.++.. ..+..++.+.+..--.++..|.|.++|+++++.
T Consensus 32 a~~~~~~l~~f~~~~~l~~--~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~ 83 (106)
T 2lfv_A 32 SSSNYDNLNGWAKKENLKN--YVVYETTRNGQPWYVLVSGVYASKEEAKKAVST 83 (106)
Confidence 3455677888888887643 222333345566677888999999999998763
Done!