Query 008982
Match_columns 547
No_of_seqs 244 out of 1251
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 18:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 4E-105 8E-110 851.5 33.5 388 54-447 57-512 (524)
2 PRK13511 6-phospho-beta-galact 100.0 2E-100 4E-105 830.0 37.7 367 57-446 28-468 (469)
3 PLN02849 beta-glucosidase 100.0 1E-100 3E-105 834.6 35.8 379 57-446 53-485 (503)
4 TIGR01233 lacG 6-phospho-beta- 100.0 3E-100 7E-105 826.6 37.6 367 58-447 28-467 (467)
5 PLN02814 beta-glucosidase 100.0 3E-100 7E-105 831.4 35.8 382 54-448 48-487 (504)
6 PLN02998 beta-glucosidase 100.0 5E-100 1E-104 828.8 35.1 378 58-444 55-488 (497)
7 PRK09593 arb 6-phospho-beta-gl 100.0 1.3E-98 3E-103 815.9 37.2 372 57-447 29-476 (478)
8 COG2723 BglB Beta-glucosidase/ 100.0 9.8E-99 2E-103 797.1 33.4 369 58-445 28-454 (460)
9 PRK09589 celA 6-phospho-beta-g 100.0 4.3E-98 9E-103 811.4 38.0 371 57-446 27-474 (476)
10 PF00232 Glyco_hydro_1: Glycos 100.0 1.9E-99 4E-104 820.3 24.8 371 58-446 29-455 (455)
11 PRK15014 6-phospho-beta-glucos 100.0 1.5E-96 3E-101 799.1 39.1 370 58-446 30-475 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 3.7E-96 8E-101 794.9 37.8 373 56-447 26-472 (474)
13 TIGR03356 BGL beta-galactosida 100.0 5.4E-93 1.2E-97 763.5 33.3 361 57-437 24-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 1.6E-14 3.4E-19 145.8 21.9 248 108-436 1-253 (254)
15 PF00150 Cellulase: Cellulase 99.5 1.7E-12 3.6E-17 130.3 20.8 254 88-403 22-279 (281)
16 PRK10150 beta-D-glucuronidase; 99.1 3.3E-08 7.1E-13 111.7 25.5 251 88-443 314-594 (604)
17 PF07745 Glyco_hydro_53: Glyco 99.1 4E-08 8.7E-13 103.0 24.3 239 90-402 27-297 (332)
18 PF00331 Glyco_hydro_10: Glyco 98.9 1.1E-08 2.3E-13 107.1 14.0 274 93-439 27-318 (320)
19 PF01229 Glyco_hydro_39: Glyco 98.9 4.9E-08 1.1E-12 107.6 19.4 289 88-442 40-361 (486)
20 PF02449 Glyco_hydro_42: Beta- 98.8 9.3E-09 2E-13 109.4 8.9 107 87-202 10-140 (374)
21 COG3693 XynA Beta-1,4-xylanase 98.6 8.4E-06 1.8E-10 84.2 21.7 262 108-443 67-343 (345)
22 PF02836 Glyco_hydro_2_C: Glyc 98.3 6E-05 1.3E-09 77.8 18.7 91 87-200 36-132 (298)
23 COG3867 Arabinogalactan endo-1 98.0 0.003 6.4E-08 65.0 24.6 245 90-401 66-342 (403)
24 PRK10340 ebgA cryptic beta-D-g 97.6 0.0041 9E-08 74.7 21.3 89 86-200 354-450 (1021)
25 COG1874 LacA Beta-galactosidas 97.4 0.00037 8E-09 79.4 7.5 124 79-213 24-175 (673)
26 COG2730 BglC Endoglucanase [Ca 97.3 0.0011 2.4E-08 71.8 10.0 116 84-202 65-193 (407)
27 PF11790 Glyco_hydro_cc: Glyco 97.2 0.0027 5.9E-08 63.9 10.6 78 299-406 136-217 (239)
28 PF14587 Glyco_hydr_30_2: O-Gl 97.0 0.24 5.2E-06 53.3 23.5 274 97-423 57-372 (384)
29 PRK09525 lacZ beta-D-galactosi 96.7 0.091 2E-06 63.5 19.9 88 87-200 371-463 (1027)
30 PF03198 Glyco_hydro_72: Gluca 96.5 0.031 6.6E-07 58.4 11.9 87 89-199 55-144 (314)
31 PF01301 Glyco_hydro_35: Glyco 96.4 0.0066 1.4E-07 63.8 6.6 94 88-187 25-130 (319)
32 COG3934 Endo-beta-mannanase [C 96.0 0.053 1.2E-06 59.2 11.1 271 89-444 28-322 (587)
33 PLN00197 beta-amylase; Provisi 95.4 0.054 1.2E-06 60.1 8.6 104 89-202 129-272 (573)
34 PLN02803 beta-amylase 95.2 0.054 1.2E-06 59.9 7.8 104 89-202 109-252 (548)
35 PLN02161 beta-amylase 95.1 0.056 1.2E-06 59.6 7.3 110 83-202 113-262 (531)
36 PF01373 Glyco_hydro_14: Glyco 95.1 0.025 5.4E-07 60.9 4.6 104 88-202 17-152 (402)
37 PLN03059 beta-galactosidase; P 95.0 0.16 3.4E-06 59.5 11.0 110 87-202 59-179 (840)
38 PLN02801 beta-amylase 94.4 0.2 4.3E-06 55.3 9.6 105 89-202 39-183 (517)
39 PLN02705 beta-amylase 94.2 0.18 3.8E-06 56.7 8.6 105 89-202 270-414 (681)
40 PLN02905 beta-amylase 94.1 0.19 4.2E-06 56.6 8.8 110 84-202 283-432 (702)
41 PF13204 DUF4038: Protein of u 94.1 0.39 8.5E-06 49.8 10.8 107 90-200 33-156 (289)
42 PF02055 Glyco_hydro_30: O-Gly 92.5 7.9 0.00017 43.4 18.2 112 299-442 301-421 (496)
43 COG3664 XynB Beta-xylosidase [ 92.2 1.6 3.4E-05 47.4 11.8 263 96-440 14-294 (428)
44 COG3250 LacZ Beta-galactosidas 89.4 1.9 4.2E-05 50.9 10.2 125 40-201 282-408 (808)
45 PF00332 Glyco_hydro_17: Glyco 88.7 0.59 1.3E-05 49.1 4.9 89 339-434 212-308 (310)
46 PF14488 DUF4434: Domain of un 85.8 8.1 0.00018 37.0 10.4 105 88-200 21-130 (166)
47 PF12876 Cellulase-like: Sugar 83.1 2.2 4.8E-05 36.1 4.8 19 183-201 1-22 (88)
48 COG5309 Exo-beta-1,3-glucanase 78.8 6.2 0.00013 40.7 7.0 57 76-153 52-108 (305)
49 KOG0626 Beta-glucosidase, lact 78.5 0.74 1.6E-05 51.3 0.4 113 393-521 386-500 (524)
50 KOG0496 Beta-galactosidase [Ca 76.7 11 0.00024 43.2 8.9 94 88-187 50-155 (649)
51 PF07488 Glyco_hydro_67M: Glyc 72.7 29 0.00063 36.6 10.0 90 86-189 56-150 (328)
52 smart00642 Aamy Alpha-amylase 69.4 11 0.00025 35.8 6.0 68 84-153 16-91 (166)
53 COG3534 AbfA Alpha-L-arabinofu 55.4 3E+02 0.0065 30.8 14.1 86 90-200 52-174 (501)
54 COG1501 Alpha-glucosidases, fa 51.5 1E+02 0.0023 36.6 10.8 100 99-206 294-422 (772)
55 PLN02361 alpha-amylase 49.4 33 0.00072 37.5 5.9 71 84-154 26-100 (401)
56 TIGR01210 conserved hypothetic 46.3 1.2E+02 0.0027 31.7 9.5 110 90-215 117-229 (313)
57 cd03174 DRE_TIM_metallolyase D 45.7 84 0.0018 31.3 7.9 83 90-188 77-159 (265)
58 PLN00196 alpha-amylase; Provis 45.3 30 0.00065 38.1 4.9 71 85-155 42-117 (428)
59 cd07945 DRE_TIM_CMS Leptospira 45.1 55 0.0012 33.9 6.5 86 88-188 75-160 (280)
60 PRK12858 tagatose 1,6-diphosph 44.4 99 0.0021 33.1 8.4 88 92-188 111-199 (340)
61 PRK12399 tagatose 1,6-diphosph 43.4 1.4E+02 0.0029 31.9 9.0 60 92-159 110-169 (324)
62 TIGR02631 xylA_Arthro xylose i 43.3 3.2E+02 0.0069 29.7 12.2 79 82-171 27-106 (382)
63 PRK12581 oxaloacetate decarbox 42.0 52 0.0011 36.8 6.1 73 86-188 99-176 (468)
64 cd07948 DRE_TIM_HCS Saccharomy 41.3 44 0.00095 34.3 5.1 60 90-153 74-133 (262)
65 cd06592 GH31_glucosidase_KIAA1 41.0 1.6E+02 0.0034 30.7 9.3 104 90-201 33-167 (303)
66 cd07939 DRE_TIM_NifV Streptomy 40.8 76 0.0016 32.2 6.7 81 90-188 72-152 (259)
67 PRK04161 tagatose 1,6-diphosph 40.4 1.6E+02 0.0035 31.5 9.0 61 91-159 111-171 (329)
68 PF14871 GHL6: Hypothetical gl 39.4 75 0.0016 29.3 5.8 61 89-153 2-65 (132)
69 PRK14041 oxaloacetate decarbox 37.9 66 0.0014 36.0 6.1 73 86-188 89-166 (467)
70 PF00128 Alpha-amylase: Alpha 37.8 47 0.001 33.1 4.6 60 90-153 7-73 (316)
71 PRK12677 xylose isomerase; Pro 37.6 5.2E+02 0.011 28.1 12.8 76 83-170 28-104 (384)
72 PRK05799 coproporphyrinogen II 37.2 1.6E+02 0.0035 31.4 8.8 95 90-202 99-194 (374)
73 PRK05692 hydroxymethylglutaryl 36.9 97 0.0021 32.2 6.9 87 89-188 81-168 (287)
74 cd06601 GH31_lyase_GLase GLase 36.2 88 0.0019 33.3 6.5 69 135-206 67-140 (332)
75 COG5520 O-Glycosyl hydrolase [ 35.1 6.3E+02 0.014 27.6 16.0 92 98-202 77-180 (433)
76 PRK05402 glycogen branching en 34.7 2.2E+02 0.0048 33.5 10.1 87 91-188 269-397 (726)
77 KOG2233 Alpha-N-acetylglucosam 34.1 94 0.002 34.9 6.3 114 86-200 77-248 (666)
78 TIGR02635 RhaI_grampos L-rhamn 33.2 2.5E+02 0.0055 30.5 9.5 122 35-189 2-130 (378)
79 TIGR02090 LEU1_arch isopropylm 33.1 1.2E+02 0.0026 32.5 7.1 82 89-188 73-154 (363)
80 cd07944 DRE_TIM_HOA_like 4-hyd 33.0 1.8E+02 0.0038 29.9 8.0 67 90-188 85-151 (266)
81 cd06603 GH31_GANC_GANAB_alpha 32.8 1.4E+02 0.003 31.6 7.3 70 135-204 67-167 (339)
82 PLN02784 alpha-amylase 32.7 87 0.0019 37.6 6.2 71 84-154 518-592 (894)
83 PRK14040 oxaloacetate decarbox 32.4 1.7E+02 0.0036 33.8 8.3 71 86-185 91-166 (593)
84 PLN02389 biotin synthase 32.1 93 0.002 33.8 6.0 58 88-153 176-234 (379)
85 PF03659 Glyco_hydro_71: Glyco 31.8 1E+02 0.0022 33.6 6.2 51 87-152 17-67 (386)
86 cd06525 GH25_Lyc-like Lyc mura 31.6 1.5E+02 0.0032 28.3 6.8 51 91-158 12-62 (184)
87 TIGR02100 glgX_debranch glycog 31.6 2.1E+02 0.0046 33.6 9.2 23 131-153 244-266 (688)
88 cd06602 GH31_MGAM_SI_GAA This 30.8 1.8E+02 0.004 30.8 7.9 68 135-203 69-169 (339)
89 PRK12331 oxaloacetate decarbox 30.2 1.9E+02 0.0042 32.1 8.1 69 90-188 99-167 (448)
90 TIGR02660 nifV_homocitr homoci 29.9 1.5E+02 0.0032 31.9 7.0 81 90-188 75-155 (365)
91 PLN02746 hydroxymethylglutaryl 29.7 1.6E+02 0.0036 31.6 7.3 86 90-188 124-210 (347)
92 cd06543 GH18_PF-ChiA-like PF-C 29.4 2.2E+02 0.0047 29.8 8.0 84 94-188 19-104 (294)
93 TIGR03471 HpnJ hopanoid biosyn 29.4 2.2E+02 0.0048 31.5 8.5 60 90-158 287-348 (472)
94 COG3589 Uncharacterized conser 28.9 1.4E+02 0.003 32.1 6.3 87 91-200 20-106 (360)
95 TIGR01232 lacD tagatose 1,6-di 28.8 2.2E+02 0.0047 30.4 7.8 60 92-159 111-170 (325)
96 cd06589 GH31 The enzymes of gl 28.6 6.3E+02 0.014 25.5 11.5 91 90-204 27-121 (265)
97 PRK12313 glycogen branching en 28.6 3.4E+02 0.0073 31.4 10.1 88 90-188 173-302 (633)
98 PRK09058 coproporphyrinogen II 28.1 4.2E+02 0.009 29.3 10.4 94 90-203 163-259 (449)
99 TIGR00539 hemN_rel putative ox 28.0 1.7E+02 0.0036 31.2 7.0 77 90-185 100-178 (360)
100 PRK08195 4-hyroxy-2-oxovalerat 26.8 1.5E+02 0.0033 31.6 6.4 67 90-188 91-157 (337)
101 TIGR01211 ELP3 histone acetylt 26.6 3.4E+02 0.0073 30.9 9.4 106 90-215 206-316 (522)
102 TIGR00433 bioB biotin syntheta 26.3 95 0.0021 31.7 4.7 55 90-152 123-178 (296)
103 cd07943 DRE_TIM_HOA 4-hydroxy- 25.7 1.5E+02 0.0033 30.0 6.0 67 90-188 88-154 (263)
104 PF02638 DUF187: Glycosyl hydr 25.5 3E+02 0.0066 28.9 8.3 98 89-188 21-154 (311)
105 PRK10933 trehalose-6-phosphate 25.3 1.5E+02 0.0032 33.9 6.3 64 86-153 32-102 (551)
106 TIGR01515 branching_enzym alph 24.4 4.5E+02 0.0099 30.3 10.1 93 91-188 160-288 (613)
107 PF05089 NAGLU: Alpha-N-acetyl 24.4 91 0.002 33.3 4.1 110 86-200 18-184 (333)
108 cd07938 DRE_TIM_HMGL 3-hydroxy 24.0 2.5E+02 0.0054 28.9 7.2 86 90-188 76-162 (274)
109 TIGR03234 OH-pyruv-isom hydrox 23.8 1.1E+02 0.0023 30.5 4.4 68 85-158 82-150 (254)
110 TIGR03217 4OH_2_O_val_ald 4-hy 23.5 2E+02 0.0044 30.5 6.6 67 90-188 90-156 (333)
111 cd06542 GH18_EndoS-like Endo-b 23.5 2.4E+02 0.0053 28.1 6.9 56 130-188 49-104 (255)
112 PRK07379 coproporphyrinogen II 23.4 6.7E+02 0.015 27.1 10.8 104 90-213 115-221 (400)
113 TIGR03581 EF_0839 conserved hy 23.0 2.1E+02 0.0046 28.9 6.1 69 88-176 136-230 (236)
114 cd00927 Cyt_c_Oxidase_VIc Cyto 23.0 28 0.00062 28.8 0.1 19 83-101 46-66 (70)
115 cd07941 DRE_TIM_LeuA3 Desulfob 22.8 2.6E+02 0.0057 28.6 7.1 81 90-185 81-162 (273)
116 PRK11858 aksA trans-homoaconit 22.4 2.6E+02 0.0057 30.1 7.3 81 90-188 78-158 (378)
117 cd06598 GH31_transferase_CtsZ 21.9 2.9E+02 0.0064 28.9 7.4 110 91-203 28-168 (317)
118 PRK10785 maltodextrin glucosid 21.9 1.8E+02 0.0038 33.5 6.2 52 91-153 183-247 (598)
119 cd07947 DRE_TIM_Re_CS Clostrid 21.8 2.8E+02 0.0061 28.7 7.1 59 90-152 77-135 (279)
120 TIGR01108 oadA oxaloacetate de 21.5 3.3E+02 0.0072 31.3 8.2 67 90-185 94-160 (582)
121 PF11997 DUF3492: Domain of un 21.3 1.2E+02 0.0027 31.1 4.4 24 338-366 185-208 (268)
122 PF10566 Glyco_hydro_97: Glyco 21.1 3.4E+02 0.0075 28.2 7.5 98 85-186 30-149 (273)
123 PRK09441 cytoplasmic alpha-amy 21.1 1.6E+02 0.0034 32.7 5.4 72 84-155 19-106 (479)
124 TIGR00612 ispG_gcpE 1-hydroxy- 21.0 5.4E+02 0.012 27.7 9.0 98 67-183 61-160 (346)
125 TIGR02403 trehalose_treC alpha 20.7 1.8E+02 0.0039 33.0 5.9 67 87-153 27-96 (543)
126 PF02065 Melibiase: Melibiase; 20.6 6.6E+02 0.014 27.5 9.9 94 90-188 61-183 (394)
127 PF04914 DltD_C: DltD C-termin 20.5 3.1E+02 0.0068 25.3 6.4 51 134-189 38-90 (130)
128 cd06600 GH31_MGAM-like This fa 20.5 2.9E+02 0.0063 28.9 7.0 69 134-203 66-164 (317)
129 KOG1065 Maltase glucoamylase a 20.3 3.7E+02 0.0081 32.2 8.3 104 91-205 315-454 (805)
130 PRK03705 glycogen debranching 20.1 2.2E+02 0.0047 33.3 6.4 55 93-153 185-263 (658)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-105 Score=851.52 Aligned_cols=388 Identities=31% Similarity=0.508 Sum_probs=334.0
Q ss_pred CCCCCCCCccccccc-cccceeccCCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHH
Q 008982 54 SGENEVPTENEEVHH-KVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALE 132 (547)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~ 132 (547)
+-..++||+||.|+| .|+...+.++++.|||+||+|+|||+|||+||+++||||||||||+|.|++ .+.||++||+
T Consensus 57 ~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~---~~gVN~~Gi~ 133 (524)
T KOG0626|consen 57 NEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRL---TGGVNEAGIQ 133 (524)
T ss_pred ccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCc---CCCcCHHHHH
Confidence 344459999999998 676888889999999999999999999999999999999999999998732 3679999999
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCCchhhhh-hCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhccccCC
Q 008982 133 RYKWIINRVRSYGMKVMLTLFHHSLPAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAG 211 (547)
Q Consensus 133 ~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~-~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~gY~~G 211 (547)
||++||++|+++||+|+|||||||+||+|++ ||||+|++++++|.+||++||++||||||+|||||||++++..||..|
T Consensus 134 fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G 213 (524)
T KOG0626|consen 134 FYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGYDTG 213 (524)
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeeehhccC
Confidence 9999999999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhhhhh--ccCCchhHHHHHHHHHHHHHHHHHHHh-hcCCCCCCeEEEEeeccccCCCCc--ccHHHHHHHh
Q 008982 212 TWPGGNPDMLEVAT--SALPTGVFNQAMHWMAIAHSKAYDYIH-AKSTSTKSKVGVAHHVSFMRPYGL--FDVTAVTLAN 286 (547)
Q Consensus 212 ~~pPg~~~~~~~~~--~~~~~~~~~~a~h~ll~AHa~A~~~ir-~~~~~~~~~VGi~~~~~~~~P~~~--~D~~aa~~~~ 286 (547)
..|||+++..-... ....++.| .|+||||+|||+||++|| +++..|+|+|||+++..|++|++. .|..|+.++.
T Consensus 214 ~~aPGrCs~~~~~c~~g~s~~epY-iv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~ 292 (524)
T KOG0626|consen 214 TKAPGRCSKYVGNCSAGNSGTEPY-IVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERAL 292 (524)
T ss_pred CCCCCCCCcccccCCCCCCCCCcc-hHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHH
Confidence 99999875421111 11234455 789999999999999999 567789999999999999999874 6777776553
Q ss_pred hcc-----------------------CCCcc-----ccCCCCcceEEeecCCCceecCCCCccc------CCC-------
Q 008982 287 TLT-----------------------TFPYV-----DSISDRLDFIGINYYGQEVVSGPGLKLV------ETD------- 325 (547)
Q Consensus 287 ~l~-----------------------~~p~~-----d~i~~~~DFiGiNyYt~~~v~~~~~~~~------~~~------- 325 (547)
.+. ++|.+ ..++|++||+||||||+.++++...... ..+
T Consensus 293 ~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~~~ 372 (524)
T KOG0626|consen 293 DFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDWTL 372 (524)
T ss_pred HhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceeeee
Confidence 211 12322 2469999999999999998875321100 000
Q ss_pred -------CCCCC-CCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCCC-----------CccchHHHHHHHHHHHHHH
Q 008982 326 -------EYSES-GRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDE-----------TDLIRRPYVIEHLLAVYAA 386 (547)
Q Consensus 326 -------~~s~~-g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~~-----------~D~~Ri~yl~~hL~~v~~A 386 (547)
..+.. ...++|+||+++|++++++|+ |+||||||||+++. .|..|++|++.||.+|++|
T Consensus 373 ~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~--np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kA 450 (524)
T KOG0626|consen 373 EGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYG--NPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKA 450 (524)
T ss_pred cccccccccccccceeeccHHHHHHHHHHHhhcC--CCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHH
Confidence 00111 236899999999999999999 79999999999973 5889999999999999999
Q ss_pred HH-cCCCeEEEEEeecccccCCcCCCCCccceEEEcCCCCccccccchHHHHHHHHHcCCCC
Q 008982 387 MI-TGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKVT 447 (547)
Q Consensus 387 i~-dGV~V~GY~~WSLlDnfEW~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~~~~ 447 (547)
|. +||||+|||+|||||||||.+||+.||||++|||.+.++|+||.|+.||+++++.+..+
T Consensus 451 i~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~~~~~~ 512 (524)
T KOG0626|consen 451 IKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLKGKVKP 512 (524)
T ss_pred HHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHcCCCCC
Confidence 96 99999999999999999999999999999999999889999999999999999987654
No 2
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=1.7e-100 Score=830.01 Aligned_cols=367 Identities=28% Similarity=0.479 Sum_probs=318.0
Q ss_pred CCCCCccccccccccceeccCCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHH
Q 008982 57 NEVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKW 136 (547)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~ 136 (547)
.++||+||.|+|+++++ +++.||||||||+|||+|||+||+++|||||+||||+|+| .|.||++||+||++
T Consensus 28 Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G-----~g~vN~~gl~~Y~~ 98 (469)
T PRK13511 28 GKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDG-----YGEVNPKGVEYYHR 98 (469)
T ss_pred CCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCC-----CCCcCHHHHHHHHH
Confidence 34999999999988764 6889999999999999999999999999999999999986 26899999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCchhhhhhCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhccccCCcCCCC
Q 008982 137 IINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGG 216 (547)
Q Consensus 137 lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~gY~~G~~pPg 216 (547)
||++|+++||+|||||||||||+||+++|||+|++++++|++||++||++||| ||+|+|||||++++..||..|.+|||
T Consensus 99 lid~l~~~GI~P~VTL~H~dlP~~L~~~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg 177 (469)
T PRK13511 99 LFAECHKRHVEPFVTLHHFDTPEALHSNGDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPG 177 (469)
T ss_pred HHHHHHHcCCEEEEEecCCCCcHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred CCchhhhhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCC---cccHHHHHHHhhcc----
Q 008982 217 NPDMLEVATSALPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG---LFDVTAVTLANTLT---- 289 (547)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~---~~D~~aa~~~~~l~---- 289 (547)
..... .. ..+++||+++|||+||++||+.. ++++||++++..+++|.+ +.|+.|+...+.+.
T Consensus 178 ~~~~~--------~~-~~~~~hn~llAHa~A~~~~~~~~--~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f 246 (469)
T PRK13511 178 IKYDL--------AK-VFQSHHNMMVAHARAVKLFKDKG--YKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFI 246 (469)
T ss_pred CCccH--------HH-HHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcc
Confidence 64210 01 24899999999999999999864 578999999999999976 57888776543211
Q ss_pred -------CCCc------------------c-----ccCC---CCcceEEeecCCCceecCC--C----------------
Q 008982 290 -------TFPY------------------V-----DSIS---DRLDFIGINYYGQEVVSGP--G---------------- 318 (547)
Q Consensus 290 -------~~p~------------------~-----d~i~---~~~DFiGiNyYt~~~v~~~--~---------------- 318 (547)
.+|. + +.|+ +++||||||||++.+|+.. .
T Consensus 247 ~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~ 326 (469)
T PRK13511 247 LDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKY 326 (469)
T ss_pred cchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccc
Confidence 1110 0 1132 4689999999999988641 0
Q ss_pred -Ccc----cC--CCCCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCC---------CCccchHHHHHHHHHH
Q 008982 319 -LKL----VE--TDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD---------ETDLIRRPYVIEHLLA 382 (547)
Q Consensus 319 -~~~----~~--~~~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~---------~~D~~Ri~yl~~hL~~ 382 (547)
... .. ..+.+.+||+|+|+||+.+|++++++|++ .+||||||||++. .+|..|++||++||.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~-~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~ 405 (469)
T PRK13511 327 QLKGVGERVKPPDVPTTDWDWIIYPQGLYDQLMRIKKDYPN-YKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEV 405 (469)
T ss_pred cccCccccccCCCCCcCCCCCeECcHHHHHHHHHHHHHcCC-CCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHH
Confidence 000 00 11346689999999999999999999972 1589999999982 3488999999999999
Q ss_pred HHHHHHcCCCeEEEEEeecccccCCcCCCCCccceEEEcCCCCccccccchHHHHHHHHHcCCC
Q 008982 383 VYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKV 446 (547)
Q Consensus 383 v~~Ai~dGV~V~GY~~WSLlDnfEW~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~~~ 446 (547)
|++||++||||+|||+|||||||||.+||++|||||+||+++ ++|+||+|++||+++|+++++
T Consensus 406 ~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~-~~R~pK~S~~wy~~~i~~~~~ 468 (469)
T PRK13511 406 ISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFET-QERYPKKSAYWYKKLAETKVI 468 (469)
T ss_pred HHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCc-CccccccHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999985 789999999999999999876
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.2e-100 Score=834.59 Aligned_cols=379 Identities=24% Similarity=0.386 Sum_probs=322.5
Q ss_pred CCCCCccccccccccceeccCCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHH
Q 008982 57 NEVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKW 136 (547)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~ 136 (547)
.++||+||.|+|+++ +.+++.||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+||++
T Consensus 53 Gkg~SiwD~~~~~~~----~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G-----~g~vN~~gl~fY~~ 123 (503)
T PLN02849 53 GRKPSVWDTFLHSRN----MSNGDIACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNG-----RGSVNPKGLQFYKN 123 (503)
T ss_pred CCcCcceeeeeccCC----CCCCCccccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCC-----CCCCCHHHHHHHHH
Confidence 349999999999773 357889999999999999999999999999999999999986 36899999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCchhhhh-hCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhccccCCcCCC
Q 008982 137 IINRVRSYGMKVMLTLFHHSLPAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPG 215 (547)
Q Consensus 137 lId~L~~~GI~PiVTL~HwDlP~wL~~-~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~gY~~G~~pP 215 (547)
+|++|+++||+|||||||||||+||++ +|||+|++++++|++||++||++|||+||+|+|||||++++..||..|.+||
T Consensus 124 lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~P 203 (503)
T PLN02849 124 FIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPP 203 (503)
T ss_pred HHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCC
Confidence 999999999999999999999999988 5999999999999999999999999999999999999999999999999999
Q ss_pred CCCchh-hhhhccCCchhHHHHHHHHHHHHHHHHHHHhhc-CCCCCCeEEEEeeccccCCCC--cccHHHHHHHhhccC-
Q 008982 216 GNPDML-EVATSALPTGVFNQAMHWMAIAHSKAYDYIHAK-STSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANTLTT- 290 (547)
Q Consensus 216 g~~~~~-~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~-~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~l~~- 290 (547)
+..... ...+.........+|+||+++||++||++||+. +..++++||++++..+++|.+ +.|+.|+.+.+.+.+
T Consensus 204 g~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~ 283 (503)
T PLN02849 204 GRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLG 283 (503)
T ss_pred CccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhh
Confidence 864310 000000001123589999999999999999975 434678999999999999976 678888765432211
Q ss_pred ----------CC------------cc-----ccCCCCcceEEeecCCCceecCCC-------Cccc----CC--CCCCCC
Q 008982 291 ----------FP------------YV-----DSISDRLDFIGINYYGQEVVSGPG-------LKLV----ET--DEYSES 330 (547)
Q Consensus 291 ----------~p------------~~-----d~i~~~~DFiGiNyYt~~~v~~~~-------~~~~----~~--~~~s~~ 330 (547)
+| .+ +.|++++||+|||||++.+|+... .... .. ...+++
T Consensus 284 ~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (503)
T PLN02849 284 WMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAF 363 (503)
T ss_pred hhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCC
Confidence 11 11 236789999999999999886411 1000 01 234578
Q ss_pred CCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCC-------CCccchHHHHHHHHHHHHHHHHcCCCeEEEEEeeccc
Q 008982 331 GRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD-------ETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISD 403 (547)
Q Consensus 331 g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~-------~~D~~Ri~yl~~hL~~v~~Ai~dGV~V~GY~~WSLlD 403 (547)
||+|+|+||+.+|++++++|+ ++||||||||++. .+|..|++||++||.+|++||++||||+|||+|||||
T Consensus 364 gw~i~P~Gl~~~L~~~~~rY~--~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~D 441 (503)
T PLN02849 364 EYAVAPWAMESVLEYIKQSYG--NPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMD 441 (503)
T ss_pred CCeEChHHHHHHHHHHHHhcC--CCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh
Confidence 999999999999999999997 4689999999983 3588999999999999999999999999999999999
Q ss_pred ccCCcCCCCCccceEEEcCCC-CccccccchHHHHHHHHHcCCC
Q 008982 404 NWEWADGYGPKFGLVAVDRAN-NLARIPRPSYHLFTKVVTTGKV 446 (547)
Q Consensus 404 nfEW~~Gy~~rFGL~~VD~~~-~~~R~pK~Sa~~y~~ii~~~~~ 446 (547)
||||.+||++|||||+||+++ +++|+||+|++||+++|++|+.
T Consensus 442 nfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~~~~ 485 (503)
T PLN02849 442 LYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKGNST 485 (503)
T ss_pred hhchhccccCccceEEECCCCCCcceecccHHHHHHHHHHhCCC
Confidence 999999999999999999987 4799999999999999999874
No 4
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=3.4e-100 Score=826.57 Aligned_cols=367 Identities=27% Similarity=0.471 Sum_probs=317.9
Q ss_pred CCCCccccccccccceeccCCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHH
Q 008982 58 EVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWI 137 (547)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~l 137 (547)
++||+||.|+|.++.. +++.||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+||++|
T Consensus 28 kg~siwD~~~~~~~~~----~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g-----~~~~N~~gl~~Y~~l 98 (467)
T TIGR01233 28 KGPVAWDKYLEDNYWY----TAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTG-----YGEVNEKGVEFYHKL 98 (467)
T ss_pred CcCchhhccccCCCCC----CCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCC-----CCCcCHHHHHHHHHH
Confidence 4999999999876653 5789999999999999999999999999999999999986 368999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCchhhhhhCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhccccCCcCCCCC
Q 008982 138 INRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGN 217 (547)
Q Consensus 138 Id~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~gY~~G~~pPg~ 217 (547)
|++|+++||+|||||||||||+||+++|||+|++++++|++||++||++||| ||+|+|||||++++..||+.|.+||+.
T Consensus 99 id~l~~~GI~P~VTL~H~dlP~~L~~~GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~ 177 (467)
T TIGR01233 99 FAECHKRHVEPFVTLHHFDTPEALHSNGDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGI 177 (467)
T ss_pred HHHHHHcCCEEEEeccCCCCcHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCc
Confidence 9999999999999999999999999999999999999999999999999998 999999999999999999999999985
Q ss_pred CchhhhhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCC---cccHHHHHHHhhc----c-
Q 008982 218 PDMLEVATSALPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG---LFDVTAVTLANTL----T- 289 (547)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~---~~D~~aa~~~~~l----~- 289 (547)
.... ....+++||+++|||+||++||+.. ++++||++++..+++|.+ +.|+.|+.+.+.+ .
T Consensus 178 ~~~~---------~~~~~a~hn~l~AHa~A~~~~~~~~--~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~ 246 (467)
T TIGR01233 178 KYDL---------AKVFQSHHNMMVSHARAVKLYKDKG--YKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFIL 246 (467)
T ss_pred cchh---------HHHHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhccc
Confidence 3210 0124899999999999999999864 478999999999999986 5788887544321 1
Q ss_pred ------CCC------------------cc-----ccC---CCCcceEEeecCCCceecCC--C-----------------
Q 008982 290 ------TFP------------------YV-----DSI---SDRLDFIGINYYGQEVVSGP--G----------------- 318 (547)
Q Consensus 290 ------~~p------------------~~-----d~i---~~~~DFiGiNyYt~~~v~~~--~----------------- 318 (547)
.+| .+ +.| ++++||||||||++.+|+.. .
T Consensus 247 d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~ 326 (467)
T TIGR01233 247 DATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQ 326 (467)
T ss_pred chhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCccccc
Confidence 011 00 113 57899999999999988641 0
Q ss_pred Ccc-----cC-CCCCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCC--------CCccchHHHHHHHHHHHH
Q 008982 319 LKL-----VE-TDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD--------ETDLIRRPYVIEHLLAVY 384 (547)
Q Consensus 319 ~~~-----~~-~~~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~--------~~D~~Ri~yl~~hL~~v~ 384 (547)
... .+ ..+.+.+||+|+|+||+.+|++++++|+. .+||||||||++. .+|..|++||++||.+|+
T Consensus 327 ~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~-~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~ 405 (467)
T TIGR01233 327 IKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPN-YKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLS 405 (467)
T ss_pred CCCcccccCCCCCCcCCCCCeeChHHHHHHHHHHHHHcCC-CCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 000 00 11346789999999999999999999972 1479999999984 348899999999999999
Q ss_pred HHHHcCCCeEEEEEeecccccCCcCCCCCccceEEEcCCCCccccccchHHHHHHHHHcCCCC
Q 008982 385 AAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKVT 447 (547)
Q Consensus 385 ~Ai~dGV~V~GY~~WSLlDnfEW~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~~~~ 447 (547)
+||++||||+|||+|||||||||..||++||||++||++ +++|+||+|++||+++|+++.++
T Consensus 406 ~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~-t~~R~~K~S~~wy~~ii~~~~~~ 467 (467)
T TIGR01233 406 DAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFD-TQERYPKKSAHWYKKLAETQVIE 467 (467)
T ss_pred HHHHcCCCEEEEeeccchhhhchhccccCccceEEECCC-CCccccccHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999997 47999999999999999998874
No 5
>PLN02814 beta-glucosidase
Probab=100.00 E-value=3.3e-100 Score=831.38 Aligned_cols=382 Identities=25% Similarity=0.390 Sum_probs=322.5
Q ss_pred CCCCCCCCccccccccccceeccCCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHH
Q 008982 54 SGENEVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALER 133 (547)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~ 133 (547)
+.+.++||+||.|+|. .++.+++.||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+|
T Consensus 48 ~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G-----~g~~N~~Gl~f 118 (504)
T PLN02814 48 DEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNG-----RGLINPKGLLF 118 (504)
T ss_pred CCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCC-----CCCCCHHHHHH
Confidence 3344599999999983 34568899999999999999999999999999999999999986 36899999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCchhhhh-hCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhccccCCc
Q 008982 134 YKWIINRVRSYGMKVMLTLFHHSLPAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGT 212 (547)
Q Consensus 134 Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~-~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~gY~~G~ 212 (547)
|++|||+|+++||+|||||||||||+||++ +|||+|++++++|++||++||++|||+||+|+|||||++++..||..|.
T Consensus 119 Y~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~ 198 (504)
T PLN02814 119 YKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGI 198 (504)
T ss_pred HHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchhhhcccccCc
Confidence 999999999999999999999999999987 5999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCchh---hhhhccCCchhHHHHHHHHHHHHHHHHHHHhhc-CCCCCCeEEEEeeccccCCCC--cccHHHHHHHh
Q 008982 213 WPGGNPDML---EVATSALPTGVFNQAMHWMAIAHSKAYDYIHAK-STSTKSKVGVAHHVSFMRPYG--LFDVTAVTLAN 286 (547)
Q Consensus 213 ~pPg~~~~~---~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~-~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~ 286 (547)
. ||.++.. ........... .+|+||+++|||+||++||+. +..++++||++++..+++|++ +.|+.|+...+
T Consensus 199 ~-pg~~~~~~~~~~~~~~~~~~~-~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~ 276 (504)
T PLN02814 199 R-YGHCSPNKFINCSTGNSCTET-YIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAK 276 (504)
T ss_pred C-CCCCCcccccccccCcchHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHH
Confidence 5 5543310 00000011223 489999999999999999964 434688999999999999985 57888876543
Q ss_pred hcc-----------CCC------------c-----cccCCCCcceEEeecCCCceecCCC-C-------cc---------
Q 008982 287 TLT-----------TFP------------Y-----VDSISDRLDFIGINYYGQEVVSGPG-L-------KL--------- 321 (547)
Q Consensus 287 ~l~-----------~~p------------~-----~d~i~~~~DFiGiNyYt~~~v~~~~-~-------~~--------- 321 (547)
.+. .+| . .+.|++++||||||||++.+|+... . ..
T Consensus 277 ~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 356 (504)
T PLN02814 277 AFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYI 356 (504)
T ss_pred HHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCccccccccc
Confidence 221 111 1 1246899999999999999886421 0 00
Q ss_pred cCCCCCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCC-----CCccchHHHHHHHHHHHHHHHHcCCCeEEE
Q 008982 322 VETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD-----ETDLIRRPYVIEHLLAVYAAMITGVPVIGY 396 (547)
Q Consensus 322 ~~~~~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~-----~~D~~Ri~yl~~hL~~v~~Ai~dGV~V~GY 396 (547)
....+.+++||+|+|+||+.+|++++++|+ ++||||||||++. .+|..|+.||++||.+|++||++||||+||
T Consensus 357 ~~~~~~~~~gWei~P~Gl~~~L~~~~~rY~--~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY 434 (504)
T PLN02814 357 ISAGNSSFFEFDATPWGLEGILEHIKQSYN--NPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGY 434 (504)
T ss_pred CCCCCcCCCCCeECcHHHHHHHHHHHHhcC--CCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 001245678999999999999999999997 4689999999973 468899999999999999999999999999
Q ss_pred EEeecccccCCcCCCCCccceEEEcCCC-CccccccchHHHHHHHHHcCCCCc
Q 008982 397 LFWTISDNWEWADGYGPKFGLVAVDRAN-NLARIPRPSYHLFTKVVTTGKVTR 448 (547)
Q Consensus 397 ~~WSLlDnfEW~~Gy~~rFGL~~VD~~~-~~~R~pK~Sa~~y~~ii~~~~~~~ 448 (547)
|+|||||||||.+||++|||||+||++| +++|+||+|++||+++|++...+.
T Consensus 435 ~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~~~~~ 487 (504)
T PLN02814 435 FVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGTIDVA 487 (504)
T ss_pred eeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhcCCChh
Confidence 9999999999999999999999999987 579999999999999998876554
No 6
>PLN02998 beta-glucosidase
Probab=100.00 E-value=5e-100 Score=828.80 Aligned_cols=378 Identities=25% Similarity=0.390 Sum_probs=317.7
Q ss_pred CCCCccccccccccceeccCCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHH
Q 008982 58 EVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWI 137 (547)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~l 137 (547)
++||+||.|+| ++ ..+..+++.||||||||+|||+|||+||+++|||||+||||+|+| .|.||++||+||+++
T Consensus 55 kg~siwD~~~~-~~-~~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G-----~g~vN~~gl~~Y~~l 127 (497)
T PLN02998 55 RTPSIWDVFAH-AG-HSGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSG-----RGPINPKGLQYYNNL 127 (497)
T ss_pred Cccchhhcccc-cC-cCCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCC-----CCCcCHHHHHHHHHH
Confidence 49999999998 44 222247889999999999999999999999999999999999986 367999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCchhhhh-hCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhccccCCcCCCC
Q 008982 138 INRVRSYGMKVMLTLFHHSLPAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGG 216 (547)
Q Consensus 138 Id~L~~~GI~PiVTL~HwDlP~wL~~-~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~gY~~G~~pPg 216 (547)
|++|+++||+|||||||||||+||++ +|||+|++++++|++||++||++||||||+|+|||||++++..||..|.+||+
T Consensus 128 id~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg 207 (497)
T PLN02998 128 IDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPA 207 (497)
T ss_pred HHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCC
Confidence 99999999999999999999999987 59999999999999999999999999999999999999999999999999998
Q ss_pred CCchhh--hhhccCCchhHHHHHHHHHHHHHHHHHHHhhc-CCCCCCeEEEEeeccccCCCC--cccHHHHHHHhhcc--
Q 008982 217 NPDMLE--VATSALPTGVFNQAMHWMAIAHSKAYDYIHAK-STSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANTLT-- 289 (547)
Q Consensus 217 ~~~~~~--~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~-~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~l~-- 289 (547)
.+.... ..+.........+|+||+++|||+||++||+. +..++++||++++..+++|.+ +.|+.++...+.+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~ 287 (497)
T PLN02998 208 RCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIG 287 (497)
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhh
Confidence 643100 00000000113489999999999999999964 334678999999999999976 56888775443211
Q ss_pred ---------CC------------Ccc-----ccCCCCcceEEeecCCCceecCCCCc--c-cC------C------CCCC
Q 008982 290 ---------TF------------PYV-----DSISDRLDFIGINYYGQEVVSGPGLK--L-VE------T------DEYS 328 (547)
Q Consensus 290 ---------~~------------p~~-----d~i~~~~DFiGiNyYt~~~v~~~~~~--~-~~------~------~~~s 328 (547)
.+ |.+ +.|++++||+|||||++.+|+..... . .. . ...+
T Consensus 288 ~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (497)
T PLN02998 288 WILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTS 367 (497)
T ss_pred hhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcC
Confidence 01 111 24688999999999999988641100 0 00 0 0122
Q ss_pred -CCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCCC-----CccchHHHHHHHHHHHHHHHHcCCCeEEEEEeecc
Q 008982 329 -ESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDE-----TDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTIS 402 (547)
Q Consensus 329 -~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~~-----~D~~Ri~yl~~hL~~v~~Ai~dGV~V~GY~~WSLl 402 (547)
.++|+|+|+||+.+|++++++|+ ++||+|||||+++. +|..|++||++||.+|++||++||||+|||+||||
T Consensus 368 ~~~~w~i~P~Gl~~~L~~~~~rY~--~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~ 445 (497)
T PLN02998 368 IENEYANTPWSLQQILLYVKETYG--NPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLM 445 (497)
T ss_pred CCCCCEEChHHHHHHHHHHHHHcC--CCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccch
Confidence 37899999999999999999997 46899999999853 48899999999999999999999999999999999
Q ss_pred cccCCcCCCCCccceEEEcCCC-CccccccchHHHHHHHHHcC
Q 008982 403 DNWEWADGYGPKFGLVAVDRAN-NLARIPRPSYHLFTKVVTTG 444 (547)
Q Consensus 403 DnfEW~~Gy~~rFGL~~VD~~~-~~~R~pK~Sa~~y~~ii~~~ 444 (547)
|||||.+||++|||||+||++| +++|+||+|++||+++|++.
T Consensus 446 DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~~ 488 (497)
T PLN02998 446 DVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKGT 488 (497)
T ss_pred hhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHhcc
Confidence 9999999999999999999987 58999999999999999975
No 7
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.3e-98 Score=815.94 Aligned_cols=372 Identities=26% Similarity=0.439 Sum_probs=315.7
Q ss_pred CCCCCcccccccccccee--c----------c--CCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCC
Q 008982 57 NEVPTENEEVHHKVTAWH--N----------V--PHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGL 122 (547)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~--~----------~--~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~ 122 (547)
.++||+||.|+|.++.+. + + .+++.||||||||+|||+|||+||+++|||||+||||+|+| .
T Consensus 29 Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G----~ 104 (478)
T PRK09593 29 GRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKG----D 104 (478)
T ss_pred CCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCC----C
Confidence 349999999999777651 1 1 15788999999999999999999999999999999999985 2
Q ss_pred cCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhh-hCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcc
Q 008982 123 KETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPH 201 (547)
Q Consensus 123 ~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~-~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~ 201 (547)
.|.+|++||+||++||++|+++||+|||||||||||+||++ +|||+|++++++|++||++||++|||+||+|+|||||+
T Consensus 105 ~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~ 184 (478)
T PRK09593 105 ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEIN 184 (478)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchh
Confidence 35699999999999999999999999999999999999986 69999999999999999999999999999999999999
Q ss_pred hhhhcccc-CCcC-CCCCCchhhhhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCC--cc
Q 008982 202 VFCMLTYC-AGTW-PGGNPDMLEVATSALPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG--LF 277 (547)
Q Consensus 202 ~~~~~gY~-~G~~-pPg~~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~--~~ 277 (547)
+++..||. .|.+ |||.... ....+|+||+|+||++||++||+.. ++++||++++..+++|.+ +.
T Consensus 185 ~~~~~~~~~~g~~~~~g~~~~----------~~~~~a~h~~llAHa~A~~~~~~~~--~~g~VGi~~~~~~~~P~~~~~~ 252 (478)
T PRK09593 185 MILHAPFMGAGLYFEEGENKE----------QVKYQAAHHELVASAIATKIAHEVD--PENKVGCMLAAGQYYPNTCHPE 252 (478)
T ss_pred hhhcccccccCcccCCCCchh----------hhHHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCeeEeCCCCHH
Confidence 99988886 5543 6653211 1134899999999999999999864 478999999999999975 57
Q ss_pred cHHHHHHHhhcc----------CCC--------------cc-----ccC-CCCcceEEeecCCCceecCCCC--------
Q 008982 278 DVTAVTLANTLT----------TFP--------------YV-----DSI-SDRLDFIGINYYGQEVVSGPGL-------- 319 (547)
Q Consensus 278 D~~aa~~~~~l~----------~~p--------------~~-----d~i-~~~~DFiGiNyYt~~~v~~~~~-------- 319 (547)
|+.|+...+.+. .+| .+ +.| ++++||||||||++.+|+....
T Consensus 253 D~~aa~~~~~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~~~~ 332 (478)
T PRK09593 253 DVWAAMKEDRENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKTAGN 332 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCCCC
Confidence 888775332111 011 01 125 3899999999999998874210
Q ss_pred --cccCCC--CCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCC---------CCccchHHHHHHHHHHHHHH
Q 008982 320 --KLVETD--EYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD---------ETDLIRRPYVIEHLLAVYAA 386 (547)
Q Consensus 320 --~~~~~~--~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~---------~~D~~Ri~yl~~hL~~v~~A 386 (547)
....++ +.+++||+|+|+||+.+|++++++|+ .||||||||++. .+|..|+.||++||.+|++|
T Consensus 333 ~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~---~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~A 409 (478)
T PRK09593 333 IFASLKNPYLKASEWGWQIDPLGLRITLNTIWDRYQ---KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDA 409 (478)
T ss_pred ccccccCCCcccCCCCCEECHHHHHHHHHHHHHHcC---CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 001111 45779999999999999999999996 589999999983 24889999999999999999
Q ss_pred HH-cCCCeEEEEEeecccccCCcCC-CCCccceEEEcCCC----CccccccchHHHHHHHHHcCCCC
Q 008982 387 MI-TGVPVIGYLFWTISDNWEWADG-YGPKFGLVAVDRAN----NLARIPRPSYHLFTKVVTTGKVT 447 (547)
Q Consensus 387 i~-dGV~V~GY~~WSLlDnfEW~~G-y~~rFGL~~VD~~~----~~~R~pK~Sa~~y~~ii~~~~~~ 447 (547)
|+ +||||+|||+|||||||||.+| |++|||||+||+++ +++|+||+|++||+++|++++.+
T Consensus 410 i~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~~~~~ 476 (478)
T PRK09593 410 INEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYKKVIASNGED 476 (478)
T ss_pred HHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccceecccHHHHHHHHHHhCCcC
Confidence 95 9999999999999999999999 99999999999986 58999999999999999988764
No 8
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.8e-99 Score=797.06 Aligned_cols=369 Identities=34% Similarity=0.600 Sum_probs=326.6
Q ss_pred CCCCccccccc--cccceeccCCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHH
Q 008982 58 EVPTENEEVHH--KVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYK 135 (547)
Q Consensus 58 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~ 135 (547)
.++|+||.+.+ -|+.+..+..+++|+||||||+|||+|||+||+++|||||+||||+|.+ ..+.+|++||+||+
T Consensus 28 kg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g----~~~e~N~~gl~fY~ 103 (460)
T COG2723 28 KGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNG----DGGEVNEKGLRFYD 103 (460)
T ss_pred CCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCC----CCCCcCHHHHHHHH
Confidence 48999999999 5899999999999999999999999999999999999999999999986 23589999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCchhhhhh-CCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhccccCCcCC
Q 008982 136 WIINRVRSYGMKVMLTLFHHSLPAWAGEY-GGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWP 214 (547)
Q Consensus 136 ~lId~L~~~GI~PiVTL~HwDlP~wL~~~-GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~gY~~G~~p 214 (547)
+|||+|+++||+|+|||+|||||+||++. |||+|+++++.|++||++||++|||+||+|+||||||+++..||+.|.+|
T Consensus 104 ~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~ 183 (460)
T COG2723 104 RLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHP 183 (460)
T ss_pred HHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccC
Confidence 99999999999999999999999999886 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCC--cccHHHHHHHhhccC--
Q 008982 215 GGNPDMLEVATSALPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANTLTT-- 290 (547)
Q Consensus 215 Pg~~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~l~~-- 290 (547)
|+..+.. ...||+||+++|||+|++++|+..+. .+||++++..+.+|.+ ++|+.|+..++.+..
T Consensus 184 p~~~~~~----------~~~qa~hh~~lA~A~avk~~~~~~~~--~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~ 251 (460)
T COG2723 184 PGIVDPK----------AAYQVAHHMLLAHALAVKAIKKINPK--GKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRF 251 (460)
T ss_pred CCccCHH----------HHHHHHHHHHHHHHHHHHHHHhhCCc--CceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhh
Confidence 9876632 23589999999999999999998762 2899999999999987 678988876654332
Q ss_pred ---------CCc-------------------cccCC-CCcceEEeecCCC-ceecCCCC-----------cccCC--CCC
Q 008982 291 ---------FPY-------------------VDSIS-DRLDFIGINYYGQ-EVVSGPGL-----------KLVET--DEY 327 (547)
Q Consensus 291 ---------~p~-------------------~d~i~-~~~DFiGiNyYt~-~~v~~~~~-----------~~~~~--~~~ 327 (547)
+|. ++.|+ +++||||+|||++ .+++.... ..+.+ .+.
T Consensus 252 FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~ 331 (460)
T COG2723 252 FLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEV 331 (460)
T ss_pred hcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcc
Confidence 121 01133 4699999999994 44432111 11112 256
Q ss_pred CCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCC--------CCccchHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 008982 328 SESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD--------ETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFW 399 (547)
Q Consensus 328 s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~--------~~D~~Ri~yl~~hL~~v~~Ai~dGV~V~GY~~W 399 (547)
+++||+|+|.||+.+|.++++||+ +||||||||++. .+|+.||+||++||.+|++||++||+|+|||+|
T Consensus 332 sdwGWeI~P~GL~~~l~~~~~rY~---~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~W 408 (460)
T COG2723 332 SDWGWEIYPKGLYDILEKLYERYG---IPLFITENGLGVKDEVDFDGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAW 408 (460)
T ss_pred cCCCceeChHHHHHHHHHHHHHhC---CCeEEecCCCCcccccccCCcCchHHHHHHHHHHHHHHHHHHcCCCcccceec
Confidence 799999999999999999999996 999999999772 267899999999999999999999999999999
Q ss_pred ecccccCCcCCCCCccceEEEcCCCCccccccchHHHHHHHHHcCC
Q 008982 400 TISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGK 445 (547)
Q Consensus 400 SLlDnfEW~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~~ 445 (547)
|++||+||.+||++||||++||++++++|+||+|++||++++++|+
T Consensus 409 s~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~sng 454 (460)
T COG2723 409 SLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIESNG 454 (460)
T ss_pred ccccccchhhccccccccEEEcccccceeeecCceeeeHHHHhcCC
Confidence 9999999999999999999999987689999999999999999998
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=4.3e-98 Score=811.39 Aligned_cols=371 Identities=25% Similarity=0.424 Sum_probs=311.9
Q ss_pred CCCCCcccccc---c-ccccee----ccC--CCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcC
Q 008982 57 NEVPTENEEVH---H-KVTAWH----NVP--HPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETV 126 (547)
Q Consensus 57 ~~~~~~~~~~~---~-~~~~~~----~~~--~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~v 126 (547)
.++||+||.|+ | .++++. ++. +++.||||||||+|||+|||+||+++|||||+||||+|+| ..|.+
T Consensus 27 gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G----~~~~~ 102 (476)
T PRK09589 27 GKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQG----DELEP 102 (476)
T ss_pred CCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCC----CCCCC
Confidence 34999999999 4 456553 222 5788999999999999999999999999999999999985 23569
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhh-hCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhh
Q 008982 127 NFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCM 205 (547)
Q Consensus 127 N~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~-~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~ 205 (547)
|++||+||++||++|+++||+|||||||||||+||++ +|||+|++++++|++||++||++|||+||+|+|||||++++.
T Consensus 103 N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~ 182 (476)
T PRK09589 103 NEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQAN 182 (476)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhhc
Confidence 9999999999999999999999999999999999986 599999999999999999999999999999999999999887
Q ss_pred c-----ccc-CCc-CCCCCCchhhhhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCC--c
Q 008982 206 L-----TYC-AGT-WPGGNPDMLEVATSALPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG--L 276 (547)
Q Consensus 206 ~-----gY~-~G~-~pPg~~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~--~ 276 (547)
. ||. .|. +|||.... ....+|+||+++|||+|++++|+..+ +++||++++..+++|.+ +
T Consensus 183 ~~~~~~~~~~~g~~~~pg~~~~----------~~~~~~~h~~llAha~A~~~~~~~~~--~~~iG~~~~~~~~~P~~~~~ 250 (476)
T PRK09589 183 FSEDFAPFTNSGILYSPGEDRE----------QIMYQAAHYELVASALAVKTGHEINP--DFQIGCMIAMCPIYPLTCAP 250 (476)
T ss_pred cccccCCccccccccCCCCchh----------HHHHHHHHHHHHHHHHHHHHHHHhCC--CCcEEEEEeCCeeeeCCCCH
Confidence 6 444 444 35553110 12358999999999999999998754 68999999999999975 5
Q ss_pred ccHHHHHHHhhcc----------CCC--------------cc-----ccC-CCCcceEEeecCCCceecCC--CC-----
Q 008982 277 FDVTAVTLANTLT----------TFP--------------YV-----DSI-SDRLDFIGINYYGQEVVSGP--GL----- 319 (547)
Q Consensus 277 ~D~~aa~~~~~l~----------~~p--------------~~-----d~i-~~~~DFiGiNyYt~~~v~~~--~~----- 319 (547)
.|+.|+.....+. .+| .+ +.| ++++||||||||++.+|+.. ..
T Consensus 251 ~d~~aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~~~~~ 330 (476)
T PRK09589 251 NDMMMATKAMHRRYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQLDYV 330 (476)
T ss_pred HHHHHHHHHHHhccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCcc
Confidence 7888776543211 011 00 123 68999999999999988631 00
Q ss_pred ---cccCCC--CCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCC---------CCccchHHHHHHHHHHHHH
Q 008982 320 ---KLVETD--EYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD---------ETDLIRRPYVIEHLLAVYA 385 (547)
Q Consensus 320 ---~~~~~~--~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~---------~~D~~Ri~yl~~hL~~v~~ 385 (547)
....++ +.+++||+|+|+||+.+|++++++|+ +||||||||++. .+|..|+.||++||.+|++
T Consensus 331 ~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~~Y~---~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~ 407 (476)
T PRK09589 331 ETRDLVSNPYVKASEWGWQIDPAGLRYSLNWFWDHYQ---LPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKK 407 (476)
T ss_pred cccccccCCCcccCCCCCccCcHHHHHHHHHHHHhcC---CCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHH
Confidence 011122 45779999999999999999999996 689999999983 2488999999999999999
Q ss_pred HH-HcCCCeEEEEEeecccccCCcCC-CCCccceEEEcCCC----CccccccchHHHHHHHHHcCCC
Q 008982 386 AM-ITGVPVIGYLFWTISDNWEWADG-YGPKFGLVAVDRAN----NLARIPRPSYHLFTKVVTTGKV 446 (547)
Q Consensus 386 Ai-~dGV~V~GY~~WSLlDnfEW~~G-y~~rFGL~~VD~~~----~~~R~pK~Sa~~y~~ii~~~~~ 446 (547)
|| ++||||+|||+|||||||||.+| |++|||||+||++| +++|+||+|++||+++|++|+.
T Consensus 408 Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~~~i~~ng~ 474 (476)
T PRK09589 408 AVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYRDVIANNGE 474 (476)
T ss_pred HHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccccccHHHHHHHHHHhcCC
Confidence 99 89999999999999999999999 99999999999986 4799999999999999998764
No 10
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=1.9e-99 Score=820.28 Aligned_cols=371 Identities=33% Similarity=0.619 Sum_probs=313.9
Q ss_pred CCCCccccccccccceeccCCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHH
Q 008982 58 EVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWI 137 (547)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~l 137 (547)
++||+||.|+|.++.+.++.+++.||||||||+|||+|||+||+++|||||+|+||+|+| ..|.+|++|++||+++
T Consensus 29 kg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g----~~g~~n~~~~~~Y~~~ 104 (455)
T PF00232_consen 29 KGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDG----FEGKVNEEGLDFYRDL 104 (455)
T ss_dssp STTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTS----SSSSS-HHHHHHHHHH
T ss_pred CCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchhheeecc----cccccCHhHhhhhHHH
Confidence 489999999999999999999999999999999999999999999999999999999984 4589999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCchhhhhhCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhccccCCcCCCCC
Q 008982 138 INRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGN 217 (547)
Q Consensus 138 Id~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~gY~~G~~pPg~ 217 (547)
|++|+++||+|||||||||+|+||+++|||+|++++++|++||++||++|||+|++|+|||||++++..||..|.+||+.
T Consensus 105 i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~ 184 (455)
T PF00232_consen 105 IDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGR 184 (455)
T ss_dssp HHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCS
T ss_pred HHHHHhhccceeeeeeecccccceeecccccCHHHHHHHHHHHHHHHHHhCCCcceEEeccccceeeccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CchhhhhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCCc--ccH-HHHHHHhhcc-----
Q 008982 218 PDMLEVATSALPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGL--FDV-TAVTLANTLT----- 289 (547)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~--~D~-~aa~~~~~l~----- 289 (547)
.+.. ...+|+||+++||++||++||+.. ++++||++++..+.+|.+. .|. .|+.+.+.+.
T Consensus 185 ~~~~----------~~~~~~h~~l~AHa~A~~~~~~~~--~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~ 252 (455)
T PF00232_consen 185 DSLK----------AFYQAAHNLLLAHAKAVKAIKEKY--PDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFL 252 (455)
T ss_dssp STHH----------HHHHHHHHHHHHHHHHHHHHHHHT--CTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHH
T ss_pred cccc----------hhhHHHhhHHHHHHHHHHHHhhcc--cceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccc
Confidence 5432 235899999999999999999876 4899999999999999863 333 5554432211
Q ss_pred ------CC--------------Ccc-----ccCCCCcceEEeecCCCceecCCCCcc--------------c-CCCCCCC
Q 008982 290 ------TF--------------PYV-----DSISDRLDFIGINYYGQEVVSGPGLKL--------------V-ETDEYSE 329 (547)
Q Consensus 290 ------~~--------------p~~-----d~i~~~~DFiGiNyYt~~~v~~~~~~~--------------~-~~~~~s~ 329 (547)
.+ |.+ +.|++++||+|||||++.+|+...... . +....++
T Consensus 253 dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 332 (455)
T PF00232_consen 253 DPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTD 332 (455)
T ss_dssp HHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCT
T ss_pred cCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCccccccccccCCccccccccccccccc
Confidence 11 211 246899999999999999887533110 0 0113578
Q ss_pred CCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCCCC--------ccchHHHHHHHHHHHHHHHHcCCCeEEEEEeec
Q 008982 330 SGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDET--------DLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTI 401 (547)
Q Consensus 330 ~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~~~--------D~~Ri~yl~~hL~~v~~Ai~dGV~V~GY~~WSL 401 (547)
+||+++|+||+++|++++++|+ ++||+|||||+++.+ |..|++||++||.+|++||+|||||+|||+|||
T Consensus 333 ~gw~i~P~Gl~~~L~~l~~~Y~--~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl 410 (455)
T PF00232_consen 333 WGWEIYPEGLRDVLRYLKDRYG--NPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSL 410 (455)
T ss_dssp TSTBBETHHHHHHHHHHHHHHT--SSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETS
T ss_pred cCcccccchHhhhhhhhccccC--CCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeecc
Confidence 9999999999999999999998 599999999999643 789999999999999999999999999999999
Q ss_pred ccccCCcCCCCCccceEEEcCCCCccccccchHHHHHHHHHcCCC
Q 008982 402 SDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKV 446 (547)
Q Consensus 402 lDnfEW~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~~~ 446 (547)
||||||.+||++||||++||+.++++|+||+|++||+++|++|++
T Consensus 411 ~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~~ng~ 455 (455)
T PF00232_consen 411 LDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIRSNGF 455 (455)
T ss_dssp B---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHHHTEE
T ss_pred ccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHHhcCC
Confidence 999999999999999999997668999999999999999999874
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=1.5e-96 Score=799.06 Aligned_cols=370 Identities=25% Similarity=0.454 Sum_probs=312.9
Q ss_pred CCCCcccccc---c-ccccee----cc--CCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCC
Q 008982 58 EVPTENEEVH---H-KVTAWH----NV--PHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVN 127 (547)
Q Consensus 58 ~~~~~~~~~~---~-~~~~~~----~~--~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN 127 (547)
++||+||.|+ | .++++. ++ .+++.||||||||+|||+|||+||+++|||||+||||+|+| ..+.+|
T Consensus 30 kg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G----~~~~~N 105 (477)
T PRK15014 30 KGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKG----DEAQPN 105 (477)
T ss_pred CcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHcCCCEEEecccceeeccCC----CCCCCC
Confidence 4899999999 4 455551 22 26788999999999999999999999999999999999985 235799
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhh-hCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchh---
Q 008982 128 FAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVF--- 203 (547)
Q Consensus 128 ~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~-~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~--- 203 (547)
++||+||+++|++|+++||+|||||||||+|+||++ +|||+|++++++|++||++||++|||+||+|+|||||+++
T Consensus 106 ~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~ 185 (477)
T PRK15014 106 EEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNW 185 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCccccccc
Confidence 999999999999999999999999999999999986 5999999999999999999999999999999999999987
Q ss_pred --hhccccC-CcC-CCCCCchhhhhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCC--cc
Q 008982 204 --CMLTYCA-GTW-PGGNPDMLEVATSALPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG--LF 277 (547)
Q Consensus 204 --~~~gY~~-G~~-pPg~~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~--~~ 277 (547)
++.||.. |.+ ||+.... ....+|+||+++|||+||++||+.. ++++||++++..+++|.+ +.
T Consensus 186 ~~~~~gy~~~g~~~~~~~~~~----------~~~~~~~h~~llAHa~A~~~~~~~~--~~~~IGi~~~~~~~~P~~~~~~ 253 (477)
T PRK15014 186 RAPLFGYCCSGVVYTEHENPE----------ETMYQVLHHQFVASALAVKAARRIN--PEMKVGCMLAMVPLYPYSCNPD 253 (477)
T ss_pred ccccccccccccccCCCCchh----------HHHHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCceeccCCCCHH
Confidence 6778874 765 4432110 1135899999999999999999875 478999999999999975 57
Q ss_pred cHHHHHHHhh--c-cC-------CC--------------cc-----ccC-CCCcceEEeecCCCceecCCCC--------
Q 008982 278 DVTAVTLANT--L-TT-------FP--------------YV-----DSI-SDRLDFIGINYYGQEVVSGPGL-------- 319 (547)
Q Consensus 278 D~~aa~~~~~--l-~~-------~p--------------~~-----d~i-~~~~DFiGiNyYt~~~v~~~~~-------- 319 (547)
|+.|+..... + .. +| .+ +.| ++++||||||||++.+|+....
T Consensus 254 D~~Aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~ 333 (477)
T PRK15014 254 DVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGF 333 (477)
T ss_pred HHHHHHHHHHhcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCcccc
Confidence 8888754321 1 10 11 00 124 5899999999999998864211
Q ss_pred -cccCCC--CCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCC---------CCccchHHHHHHHHHHHHHHH
Q 008982 320 -KLVETD--EYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD---------ETDLIRRPYVIEHLLAVYAAM 387 (547)
Q Consensus 320 -~~~~~~--~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~---------~~D~~Ri~yl~~hL~~v~~Ai 387 (547)
...+++ ..+++||+|+|+||+.+|++++++|+ +||||||||++. .+|..|++||++||.+|++||
T Consensus 334 ~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~---~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai 410 (477)
T PRK15014 334 EGSVPNPYVKASDWGWQIDPVGLRYALCELYERYQ---KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAV 410 (477)
T ss_pred ccccCCCCcccCCCCCccCcHHHHHHHHHHHHhcC---CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 001122 35779999999999999999999996 689999999983 248899999999999999999
Q ss_pred H-cCCCeEEEEEeecccccCCcCC-CCCccceEEEcCCC----CccccccchHHHHHHHHHcCCC
Q 008982 388 I-TGVPVIGYLFWTISDNWEWADG-YGPKFGLVAVDRAN----NLARIPRPSYHLFTKVVTTGKV 446 (547)
Q Consensus 388 ~-dGV~V~GY~~WSLlDnfEW~~G-y~~rFGL~~VD~~~----~~~R~pK~Sa~~y~~ii~~~~~ 446 (547)
+ +||||+|||+|||||||||.+| |++|||||+||+++ +++|+||+|++||+++|++|+.
T Consensus 411 ~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~ng~ 475 (477)
T PRK15014 411 TYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGE 475 (477)
T ss_pred HHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCcccceecccHHHHHHHHHHhcCC
Confidence 5 9999999999999999999999 99999999999986 4799999999999999998765
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=3.7e-96 Score=794.95 Aligned_cols=373 Identities=26% Similarity=0.475 Sum_probs=318.2
Q ss_pred CCCCCCcccccccccccee------------ccC--CCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCC
Q 008982 56 ENEVPTENEEVHHKVTAWH------------NVP--HPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNG 121 (547)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~------------~~~--~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G 121 (547)
+.++||+||.|+|.++.+. ++. +++.||||||||+|||+||++||+++|||||+||||+|++
T Consensus 26 ~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g---- 101 (474)
T PRK09852 26 GGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQG---- 101 (474)
T ss_pred CCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCC----
Confidence 3449999999999877652 222 5788999999999999999999999999999999999985
Q ss_pred CcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhh-hCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCc
Q 008982 122 LKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGE-YGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEP 200 (547)
Q Consensus 122 ~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~-~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP 200 (547)
..+.+|++|++||+++|++|+++||+|||||+|||+|+||++ +|||+|++++++|++||++||++|||+||+|+|||||
T Consensus 102 ~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEP 181 (474)
T PRK09852 102 DELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEI 181 (474)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecch
Confidence 235689999999999999999999999999999999999986 6999999999999999999999999999999999999
Q ss_pred chhhhcccc-CCc-CCCCCCchhhhhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCC--c
Q 008982 201 HVFCMLTYC-AGT-WPGGNPDMLEVATSALPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG--L 276 (547)
Q Consensus 201 ~~~~~~gY~-~G~-~pPg~~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~--~ 276 (547)
++++..||. .|. +||+.... ....+|+||+|+|||+||+++|+..+ +++||++++..+++|.+ +
T Consensus 182 n~~~~~gy~~~g~~~~p~~~~~----------~~~~~~~hn~llAHa~A~~~~~~~~~--~~~IGi~~~~~~~~P~~~~~ 249 (474)
T PRK09852 182 NIMLHSPFSGAGLVFEEGENQD----------QVKYQAAHHELVASALATKIAHEVNP--QNQVGCMLAGGNFYPYSCKP 249 (474)
T ss_pred hhhhccCccccCcccCCCCCch----------HhHHHHHHHHHHHHHHHHHHHHHhCC--CCeEEEEEeCCeeeeCCCCH
Confidence 999999996 675 47763211 11248999999999999999998753 78999999999999976 5
Q ss_pred ccHHHHHHHh---hcc-------CCC--------------cc-----ccCCCCcceEEeecCCCceecCCC------C--
Q 008982 277 FDVTAVTLAN---TLT-------TFP--------------YV-----DSISDRLDFIGINYYGQEVVSGPG------L-- 319 (547)
Q Consensus 277 ~D~~aa~~~~---~l~-------~~p--------------~~-----d~i~~~~DFiGiNyYt~~~v~~~~------~-- 319 (547)
.|+.|+...+ .+. .+| .+ +.|++++||||||||++.+|+... .
T Consensus 250 ~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~ 329 (474)
T PRK09852 250 EDVWAALEKDRENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAAN 329 (474)
T ss_pred HHHHHHHHHHHHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCCCcCC
Confidence 7887774322 110 011 11 236789999999999999886421 0
Q ss_pred --cccCCC--CCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCC---------CCccchHHHHHHHHHHHHHH
Q 008982 320 --KLVETD--EYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD---------ETDLIRRPYVIEHLLAVYAA 386 (547)
Q Consensus 320 --~~~~~~--~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~---------~~D~~Ri~yl~~hL~~v~~A 386 (547)
....++ +.+++||+|+|+||+.+|++++++|+ .||||||||++. .+|..|+.||++||.+|++|
T Consensus 330 ~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~---~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~A 406 (474)
T PRK09852 330 VVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQ---KPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEA 406 (474)
T ss_pred ceecccCCCcccCCCCCeeChHHHHHHHHHHHHhcC---CCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 001111 45779999999999999999999996 689999999983 24889999999999999999
Q ss_pred HHcCCCeEEEEEeecccccCCcCC-CCCccceEEEcCCC----CccccccchHHHHHHHHHcCCCC
Q 008982 387 MITGVPVIGYLFWTISDNWEWADG-YGPKFGLVAVDRAN----NLARIPRPSYHLFTKVVTTGKVT 447 (547)
Q Consensus 387 i~dGV~V~GY~~WSLlDnfEW~~G-y~~rFGL~~VD~~~----~~~R~pK~Sa~~y~~ii~~~~~~ 447 (547)
|++||||+|||+|||||||||..| |++|||||+||++| +++|+||+|++||+++|++|+.+
T Consensus 407 i~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ii~~ng~~ 472 (474)
T PRK09852 407 IADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKKVIASNGED 472 (474)
T ss_pred HHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceecccHHHHHHHHHHhCCcc
Confidence 999999999999999999999999 99999999999986 57999999999999999998864
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=5.4e-93 Score=763.54 Aligned_cols=361 Identities=31% Similarity=0.564 Sum_probs=316.7
Q ss_pred CCCCCccccccccccceeccCCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHH
Q 008982 57 NEVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKW 136 (547)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~ 136 (547)
.++||+||.|+|+++.+.++.+++.||||||+|+|||++|++||+++|||||+||||+|+| .|.+|+++++||++
T Consensus 24 gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g-----~~~~n~~~~~~y~~ 98 (427)
T TIGR03356 24 GRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEG-----TGPVNPKGLDFYDR 98 (427)
T ss_pred CCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCC-----CCCcCHHHHHHHHH
Confidence 3489999999999998877778899999999999999999999999999999999999985 26899999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCchhhhhhCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhccccCCcCCCC
Q 008982 137 IINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPGG 216 (547)
Q Consensus 137 lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~gY~~G~~pPg 216 (547)
+|++|+++||+|||||||||+|+||++.|||+|++++++|++||+.||++|||+|++|+|||||++++..||..|.+||+
T Consensus 99 ~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~ 178 (427)
T TIGR03356 99 LVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPG 178 (427)
T ss_pred HHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCC
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999998
Q ss_pred CCchhhhhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCC--cccHHHHHHHhhcc-----
Q 008982 217 NPDMLEVATSALPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYG--LFDVTAVTLANTLT----- 289 (547)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~--~~D~~aa~~~~~l~----- 289 (547)
.++.. ...+++||+++||++||++||+..+ +++||++++..+++|.+ +.|+.++...+.+.
T Consensus 179 ~~~~~----------~~~~~~hnll~Aha~A~~~~~~~~~--~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~ 246 (427)
T TIGR03356 179 LRDLR----------AALQAAHHLLLAHGLAVQALRANGP--GAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFL 246 (427)
T ss_pred CccHH----------HHHHHHHHHHHHHHHHHHHHHHhCC--CCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhh
Confidence 54321 1248999999999999999998754 78999999999999975 56777775443211
Q ss_pred ------CCC-----------c-----cccCCCCcceEEeecCCCceecCCCCc------ccCCCCCCCCCCccCchHHHH
Q 008982 290 ------TFP-----------Y-----VDSISDRLDFIGINYYGQEVVSGPGLK------LVETDEYSESGRGVYPDGLFR 341 (547)
Q Consensus 290 ------~~p-----------~-----~d~i~~~~DFiGiNyYt~~~v~~~~~~------~~~~~~~s~~g~~i~P~GL~~ 341 (547)
.+| . .+.+++++||||||||++.+|+..... ..+..+.+.+||+++|.||+.
T Consensus 247 d~~~~G~yP~~~~~~l~~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~ 326 (427)
T TIGR03356 247 DPLLKGRYPEDLLEYLGDAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAGFVEVPEGVPKTAMGWEVYPEGLYD 326 (427)
T ss_pred HHHhCCCCCHHHHHHhccCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCCccccCCCCCcCCCCCeechHHHHH
Confidence 112 1 123578999999999999988742110 011123466899999999999
Q ss_pred HHHHHHHHhCCCCCcEEEeecCCCC--------CCccchHHHHHHHHHHHHHHHHcCCCeEEEEEeecccccCCcCCCCC
Q 008982 342 VLHQFHERYKHLNLPFIITENGVSD--------ETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGP 413 (547)
Q Consensus 342 ~L~~i~~rY~~~~~PI~ITENG~~~--------~~D~~Ri~yl~~hL~~v~~Ai~dGV~V~GY~~WSLlDnfEW~~Gy~~ 413 (547)
+|+++++||+ ++||+|||||++. .+|..|+.||++||.+|++||++||||+|||+|||+|||||.+||++
T Consensus 327 ~L~~~~~rY~--~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~ 404 (427)
T TIGR03356 327 LLLRLKEDYP--GPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSK 404 (427)
T ss_pred HHHHHHHhcC--CCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccccchhccccc
Confidence 9999999997 4689999999984 34889999999999999999999999999999999999999999999
Q ss_pred ccceEEEcCCCCccccccchHHHH
Q 008982 414 KFGLVAVDRANNLARIPRPSYHLF 437 (547)
Q Consensus 414 rFGL~~VD~~~~~~R~pK~Sa~~y 437 (547)
||||++||++ +++|+||+|++||
T Consensus 405 rfGl~~VD~~-~~~R~~K~S~~wy 427 (427)
T TIGR03356 405 RFGLVHVDYE-TQKRTPKDSAKWY 427 (427)
T ss_pred ccceEEECCC-CCcccccceeeeC
Confidence 9999999998 4799999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.65 E-value=1.6e-14 Score=145.84 Aligned_cols=248 Identities=20% Similarity=0.267 Sum_probs=159.7
Q ss_pred ccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCe--EEEEecCCCCchhhhhhCCCCChhhHHHHHHHHHHHHH
Q 008982 108 IDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMK--VMLTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVD 185 (547)
Q Consensus 108 I~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~--PiVTL~HwDlP~wL~~~GGW~n~~~v~~F~~YA~~vf~ 185 (547)
+.|++|+|.+ |.+|++.+ +.+++.|+++||+ ..+.+.|...|.|+...+ .++..+.|.+|.+.+++
T Consensus 1 ~kW~~~ep~~------G~~n~~~~---D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~---~~~~~~~~~~~i~~v~~ 68 (254)
T smart00633 1 MKWDSTEPSR------GQFNFSGA---DAIVNFAKENGIKVRGHTLVWHSQTPDWVFNLS---KETLLARLENHIKTVVG 68 (254)
T ss_pred CCcccccCCC------CccChHHH---HHHHHHHHHCCCEEEEEEEeecccCCHhhhcCC---HHHHHHHHHHHHHHHHH
Confidence 3699999975 89999877 5699999999999 456677889999987533 56788999999999999
Q ss_pred HhCCcceeEEEecCcchhhhccccCCcCCCCCCchhhhhhccCCchhHHHHH-HHHHHHHHHHHHHHhhcCCCCCCeEEE
Q 008982 186 SVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAM-HWMAIAHSKAYDYIHAKSTSTKSKVGV 264 (547)
Q Consensus 186 ~fGDrVk~WiT~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~-h~ll~AHa~A~~~ir~~~~~~~~~VGi 264 (547)
+|+++|..|-++|||......|+.... +..++ ..++ ..|+++.|+..| +.++
T Consensus 69 ry~g~i~~wdV~NE~~~~~~~~~~~~~--------------------w~~~~G~~~i---~~af~~ar~~~P--~a~l-- 121 (254)
T smart00633 69 RYKGKIYAWDVVNEALHDNGSGLRRSV--------------------WYQILGEDYI---EKAFRYAREADP--DAKL-- 121 (254)
T ss_pred HhCCcceEEEEeeecccCCCcccccch--------------------HHHhcChHHH---HHHHHHHHHhCC--CCEE--
Confidence 999999999999999852210111001 11111 1122 356777777765 4454
Q ss_pred Eeec-cccCCCCcccHHHHHHHhhccCCCccccCCCCcceEEeecCCCceecCCCCcccCCCCCCCCCCccCchHHHHHH
Q 008982 265 AHHV-SFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEVVSGPGLKLVETDEYSESGRGVYPDGLFRVL 343 (547)
Q Consensus 265 ~~~~-~~~~P~~~~D~~aa~~~~~l~~~p~~d~i~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~s~~g~~i~P~GL~~~L 343 (547)
.+|- ....+ +........+.+.+ ..-...+|-||++..... . . ..|..|...|
T Consensus 122 ~~Ndy~~~~~-~~k~~~~~~~v~~l------~~~g~~iDgiGlQ~H~~~--~----------------~-~~~~~~~~~l 175 (254)
T smart00633 122 FYNDYNTEEP-NAKRQAIYELVKKL------KAKGVPIDGIGLQSHLSL--G----------------S-PNIAEIRAAL 175 (254)
T ss_pred EEeccCCcCc-cHHHHHHHHHHHHH------HHCCCccceeeeeeeecC--C----------------C-CCHHHHHHHH
Confidence 3331 11111 00000000011111 111345899999643110 0 0 1245678888
Q ss_pred HHHHHHhCCCCCcEEEeecCCCCCCc-cchHHHHHHHHHHHHHHHHcCCCeEEEEEeecccccCCcCCCCCccceEEEcC
Q 008982 344 HQFHERYKHLNLPFIITENGVSDETD-LIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDR 422 (547)
Q Consensus 344 ~~i~~rY~~~~~PI~ITENG~~~~~D-~~Ri~yl~~hL~~v~~Ai~dGV~V~GY~~WSLlDnfEW~~Gy~~rFGL~~VD~ 422 (547)
..+.+. ++||+|||.++....+ ..+.+++++++..+.. .. .|.|.++|.+.|...|..+ .+.||+.-|
T Consensus 176 ~~~~~~----g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~---~p-~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~- 244 (254)
T smart00633 176 DRFASL----GLEIQITELDISGYPNPQAQAADYEEVFKACLA---HP-AVTGVTVWGVTDKYSWLDG--GAPLLFDAN- 244 (254)
T ss_pred HHHHHc----CCceEEEEeecCCCCcHHHHHHHHHHHHHHHHc---CC-CeeEEEEeCCccCCcccCC--CCceeECCC-
Confidence 877543 5999999999986544 3456677777665432 22 7899999999999999875 567887322
Q ss_pred CCCccccccchHHH
Q 008982 423 ANNLARIPRPSYHL 436 (547)
Q Consensus 423 ~~~~~R~pK~Sa~~ 436 (547)
-+||+++++
T Consensus 245 -----~~~kpa~~~ 253 (254)
T smart00633 245 -----YQPKPAYWA 253 (254)
T ss_pred -----CCCChhhhc
Confidence 378888764
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.51 E-value=1.7e-12 Score=130.34 Aligned_cols=254 Identities=20% Similarity=0.274 Sum_probs=155.5
Q ss_pred ChHHHHHHHHhcCCCeEEecccccccC-CCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCC
Q 008982 88 DPDIELKLAKDTGVSVFRLGIDWSRIM-PAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGG 166 (547)
Q Consensus 88 ~~~eDl~l~k~lG~~~yRfsI~WsRI~-P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GG 166 (547)
..++|++.|+++|+|++|+.|.|..++ |.+ .+.++...+++++++|+.|.++||.+||+||+. |.|....++
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~-----~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~~~ 94 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNP-----GYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGGDG 94 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTST-----TTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSSTST
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCC-----CccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccccc
Confidence 568999999999999999999998888 443 246999999999999999999999999999985 777544344
Q ss_pred CC-ChhhHHHHHHHHHHHHHHhCC--cceeEEEecCcchhhhccccCCcCCCCCCchhhhhhccCCchhHHHHHHHHHHH
Q 008982 167 WK-LEKTIDYFMDFTRLVVDSVSD--IVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMHWMAIA 243 (547)
Q Consensus 167 W~-n~~~v~~F~~YA~~vf~~fGD--rVk~WiT~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h~ll~A 243 (547)
+. .....+.|.+|.+.++++|++ .|-.|-.+|||...... ..|+.. -...+...
T Consensus 95 ~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~----~~w~~~-------------------~~~~~~~~ 151 (281)
T PF00150_consen 95 YGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDD----ANWNAQ-------------------NPADWQDW 151 (281)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTST----TTTSHH-------------------HTHHHHHH
T ss_pred cccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCc----cccccc-------------------cchhhhhH
Confidence 44 355788899999999999943 68899999999864331 011100 00112333
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEeeccccCCCCcccHHHHHHHhhccCCCccccCCCCcceEEeecCCCceecCCCCcccC
Q 008982 244 HSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEVVSGPGLKLVE 323 (547)
Q Consensus 244 Ha~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~l~~~p~~d~i~~~~DFiGiNyYt~~~v~~~~~~~~~ 323 (547)
..+++++||+..+ +..|-+- ...+. .+....... .| ......|++.+|+|.........
T Consensus 152 ~~~~~~~Ir~~~~--~~~i~~~-~~~~~-----~~~~~~~~~-----~P---~~~~~~~~~~~H~Y~~~~~~~~~----- 210 (281)
T PF00150_consen 152 YQRAIDAIRAADP--NHLIIVG-GGGWG-----ADPDGAAAD-----NP---NDADNNDVYSFHFYDPYDFSDQW----- 210 (281)
T ss_dssp HHHHHHHHHHTTS--SSEEEEE-EHHHH-----TBHHHHHHH-----ST---TTTTTSEEEEEEEETTTCHHTTT-----
T ss_pred HHHHHHHHHhcCC--cceeecC-CCccc-----cccchhhhc-----Cc---ccccCceeEEeeEeCCCCcCCcc-----
Confidence 4667888888876 3333221 11111 011111111 22 22467799999999854221100
Q ss_pred CCCCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCCCCccchHHHHHHHHHHHHHHHHcCCCeEEEEEeeccc
Q 008982 324 TDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISD 403 (547)
Q Consensus 324 ~~~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~~~D~~Ri~yl~~hL~~v~~Ai~dGV~V~GY~~WSLlD 403 (547)
.. +-......+...+..........++||+|+|.|+...+......+....+..+ .+.| .|.++|++=.
T Consensus 211 ----~~-~~~~~~~~~~~~~~~~~~~~~~~g~pv~~gE~G~~~~~~~~~~~~~~~~~~~~---~~~~---~g~~~W~~~~ 279 (281)
T PF00150_consen 211 ----NP-GNWGDASALESSFRAALNWAKKNGKPVVVGEFGWSNNDGNGSTDYADAWLDYL---EQNG---IGWIYWSWKP 279 (281)
T ss_dssp ----ST-CSHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTTSCHHHHHHHHHHHHH---HHTT---CEEEECEESS
T ss_pred ----cc-ccchhhhHHHHHHHHHHHHHHHcCCeEEEeCcCCcCCCCCcCHHHHHHHHHHH---HHCC---CeEEEEecCC
Confidence 00 00011112223333333222223589999999998544333445555543332 2234 4889998743
No 16
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.07 E-value=3.3e-08 Score=111.68 Aligned_cols=251 Identities=20% Similarity=0.192 Sum_probs=146.6
Q ss_pred ChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhh-----
Q 008982 88 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAG----- 162 (547)
Q Consensus 88 ~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~----- 162 (547)
.+..|+++||++|+|++|+| ..|.. ..+++.|=+.||-.+.-+--|....|+.
T Consensus 314 ~~~~d~~l~K~~G~N~vR~s-----h~p~~-----------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~ 371 (604)
T PRK10150 314 LNVHDHNLMKWIGANSFRTS-----HYPYS-----------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEA 371 (604)
T ss_pred HHHHHHHHHHHCCCCEEEec-----cCCCC-----------------HHHHHHHHhcCcEEEEecccccccccccccccc
Confidence 36789999999999999995 23432 2577888899998886553222222211
Q ss_pred ---hhCCCC----ChhhHHHHHHHHHHHHHHhCCc--ceeEEEecCcchhhhccccCCcCCCCCCchhhhhhccCCchhH
Q 008982 163 ---EYGGWK----LEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVF 233 (547)
Q Consensus 163 ---~~GGW~----n~~~v~~F~~YA~~vf~~fGDr--Vk~WiT~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~ 233 (547)
....|. +++..+.+.+-++.+++++... |-.|...||+..- . + . .
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~---------~-~----~-----------~- 425 (604)
T PRK10150 372 GNKPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR---------E-Q----G-----------A- 425 (604)
T ss_pred cccccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc---------c-h----h-----------H-
Confidence 112232 3567788888899999998875 7789999996310 0 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCCcccHHHHHHHhhccCCCccccCCCCcceEEeecCCCce
Q 008982 234 NQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEV 313 (547)
Q Consensus 234 ~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~l~~~p~~d~i~~~~DFiGiNyYt~~~ 313 (547)
... +...++++|+..++ --|..+.+... .+ ..+.....+|++|+|.|...+
T Consensus 426 ----~~~---~~~l~~~~k~~Dpt--R~vt~~~~~~~-~~-------------------~~~~~~~~~Dv~~~N~Y~~wy 476 (604)
T PRK10150 426 ----REY---FAPLAELTRKLDPT--RPVTCVNVMFA-TP-------------------DTDTVSDLVDVLCLNRYYGWY 476 (604)
T ss_pred ----HHH---HHHHHHHHHhhCCC--CceEEEecccC-Cc-------------------ccccccCcccEEEEcccceec
Confidence 011 12344666666653 12333221100 00 011224568999999875432
Q ss_pred ecCCCCcccCCCCCCCCCCccCc-hHHHHHHHHHHHHhCCCCCcEEEeecCCCCC-----------CccchHHHHHHHHH
Q 008982 314 VSGPGLKLVETDEYSESGRGVYP-DGLFRVLHQFHERYKHLNLPFIITENGVSDE-----------TDLIRRPYVIEHLL 381 (547)
Q Consensus 314 v~~~~~~~~~~~~~s~~g~~i~P-~GL~~~L~~i~~rY~~~~~PI~ITENG~~~~-----------~D~~Ri~yl~~hL~ 381 (547)
... +....+ ..+...|....+.| ++||+|||.|.+.. +++....|+.+|+
T Consensus 477 ~~~--------------~~~~~~~~~~~~~~~~~~~~~---~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~- 538 (604)
T PRK10150 477 VDS--------------GDLETAEKVLEKELLAWQEKL---HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYH- 538 (604)
T ss_pred CCC--------------CCHHHHHHHHHHHHHHHHHhc---CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHH-
Confidence 110 000000 11334455555556 49999999996431 1223444555554
Q ss_pred HHHHHHHcCCCeEEEEEeeccccc-C---CcCCCCCccceEEEcCCCCccccccchHHHHHHHHHc
Q 008982 382 AVYAAMITGVPVIGYLFWTISDNW-E---WADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTT 443 (547)
Q Consensus 382 ~v~~Ai~dGV~V~GY~~WSLlDnf-E---W~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~ 443 (547)
+++++-=.+.|-|+|.+.|-. + |..+ ....||+ |. .|.||++++.|+++-+.
T Consensus 539 ---~~~~~~p~~~G~~iW~~~D~~~~~g~~~~~-g~~~Gl~--~~----dr~~k~~~~~~k~~~~~ 594 (604)
T PRK10150 539 ---RVFDRVPAVVGEQVWNFADFATSQGILRVG-GNKKGIF--TR----DRQPKSAAFLLKKRWTG 594 (604)
T ss_pred ---HHHhcCCceEEEEEEeeeccCCCCCCcccC-CCcceeE--cC----CCCChHHHHHHHHHhhc
Confidence 445544569999999999931 1 2211 1467997 32 38999999999998753
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.06 E-value=4e-08 Score=103.05 Aligned_cols=239 Identities=22% Similarity=0.334 Sum_probs=137.3
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhh-----hh
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAG-----EY 164 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~-----~~ 164 (547)
++=+++||+.|+|++|+-+ | +-|.. .|.-| +++-..+..+.+++||+.++++|--| .|.+ .-
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~-----~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD--~WaDPg~Q~~P 93 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYD-----GGYND---LEDVIALAKRAKAAGMKVLLDFHYSD--FWADPGKQNKP 93 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TT-----TTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSS--S--BTTB-B--
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcc-----cccCC---HHHHHHHHHHHHHCCCeEEEeecccC--CCCCCCCCCCC
Confidence 4567999999999999987 5 44542 14444 55667899999999999999998644 2432 23
Q ss_pred CCCCC---hhhHHHHHHHHHHHHHHh---CCcceeEEEecCcchhhhccccCCcCCCCCCchhhhhhccCCchhHHHHHH
Q 008982 165 GGWKL---EKTIDYFMDFTRLVVDSV---SDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMH 238 (547)
Q Consensus 165 GGW~n---~~~v~~F~~YA~~vf~~f---GDrVk~WiT~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h 238 (547)
-+|.+ .+..+...+|.+-+.+.+ |-.++++.+=||.+.-.+ ||-+.... + .-+.
T Consensus 94 ~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~~~------------~-~~~a 153 (332)
T PF07745_consen 94 AAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKPSN------------W-DNLA 153 (332)
T ss_dssp TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCTT-------------H-HHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCccC------------H-HHHH
Confidence 67988 678888999999888777 456888889999875222 45444211 1 1223
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCCcccHHHHH-HHhhccCCCccccCCCCcceEEeecCCCceecCC
Q 008982 239 WMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVT-LANTLTTFPYVDSISDRLDFIGINYYGQEVVSGP 317 (547)
Q Consensus 239 ~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~-~~~~l~~~p~~d~i~~~~DFiGiNyYt~~~v~~~ 317 (547)
.||.| +++++|+..+ ..+|-+ |... ..|..... +.+.+ ......+|+||++||..
T Consensus 154 ~ll~a---g~~AVr~~~p--~~kV~l--H~~~-----~~~~~~~~~~f~~l------~~~g~d~DviGlSyYP~------ 209 (332)
T PF07745_consen 154 KLLNA---GIKAVREVDP--NIKVML--HLAN-----GGDNDLYRWFFDNL------KAAGVDFDVIGLSYYPF------ 209 (332)
T ss_dssp HHHHH---HHHHHHTHSS--TSEEEE--EES------TTSHHHHHHHHHHH------HHTTGG-SEEEEEE-ST------
T ss_pred HHHHH---HHHHHHhcCC--CCcEEE--EECC-----CCchHHHHHHHHHH------HhcCCCcceEEEecCCC------
Confidence 46644 5555556554 456633 3321 12322111 11111 11135789999999962
Q ss_pred CCcccCCCCCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCCC---Ccc-------------c--hHHHHHHH
Q 008982 318 GLKLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDE---TDL-------------I--RRPYVIEH 379 (547)
Q Consensus 318 ~~~~~~~~~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~~---~D~-------------~--Ri~yl~~h 379 (547)
|.-....|...|..+.+||+ +||+|+|+|++-. .|. . -.+=-++.
T Consensus 210 --------------w~~~l~~l~~~l~~l~~ry~---K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~ 272 (332)
T PF07745_consen 210 --------------WHGTLEDLKNNLNDLASRYG---KPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADF 272 (332)
T ss_dssp --------------TST-HHHHHHHHHHHHHHHT----EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHH
T ss_pred --------------CcchHHHHHHHHHHHHHHhC---CeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHH
Confidence 22245678999999999995 8999999998732 010 0 01123344
Q ss_pred HHHHHHHHHc--CCCeEEEEEeecc
Q 008982 380 LLAVYAAMIT--GVPVIGYLFWTIS 402 (547)
Q Consensus 380 L~~v~~Ai~d--GV~V~GY~~WSLl 402 (547)
|..+.+++.+ +-...|.|+|---
T Consensus 273 l~~l~~~v~~~p~~~g~GvfYWeP~ 297 (332)
T PF07745_consen 273 LRDLINAVKNVPNGGGLGVFYWEPA 297 (332)
T ss_dssp HHHHHHHHHTS--TTEEEEEEE-TT
T ss_pred HHHHHHHHHHhccCCeEEEEeeccc
Confidence 4555555554 5689999999543
No 18
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.94 E-value=1.1e-08 Score=107.14 Aligned_cols=274 Identities=21% Similarity=0.325 Sum_probs=159.8
Q ss_pred HHHHHhcCCCeEEec--ccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEE--EEecCCCCchhhhhhCCCC
Q 008982 93 LKLAKDTGVSVFRLG--IDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVM--LTLFHHSLPAWAGEYGGWK 168 (547)
Q Consensus 93 l~l~k~lG~~~yRfs--I~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~Pi--VTL~HwDlP~wL~~~GGW~ 168 (547)
...+-.--+|..=.. .-|..++|.. |.+|.+.. +.+++.|.++||++- .-+.|--+|.|+....-+.
T Consensus 27 ~~~~~~~~Fn~~t~eN~~Kw~~~e~~~------g~~~~~~~---D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~ 97 (320)
T PF00331_consen 27 YRELFAKHFNSVTPENEMKWGSIEPEP------GRFNFESA---DAILDWARENGIKVRGHTLVWHSQTPDWVFNLANGS 97 (320)
T ss_dssp HHHHHHHH-SEEEESSTTSHHHHESBT------TBEE-HHH---HHHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSS
T ss_pred HHHHHHHhCCeeeeccccchhhhcCCC------CccCccch---hHHHHHHHhcCcceeeeeEEEcccccceeeeccCCC
Confidence 444444456666554 8999999975 78998776 689999999999987 3455778999998642233
Q ss_pred Chh---hHHHHHHHHHHHHHHhCC--cceeEEEecCcchhhhccccCCcCCCCCCchhhhhhccCCchhHHHHHH-HHHH
Q 008982 169 LEK---TIDYFMDFTRLVVDSVSD--IVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMH-WMAI 242 (547)
Q Consensus 169 n~~---~v~~F~~YA~~vf~~fGD--rVk~WiT~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h-~ll~ 242 (547)
..+ ......+|.+.++++|++ +|..|=.+|||.-... .+.+.++. .+..++- ..+
T Consensus 98 ~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~-------~~~~~r~~-----------~~~~~lG~~yi- 158 (320)
T PF00331_consen 98 PDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDG-------NPGGLRDS-----------PWYDALGPDYI- 158 (320)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTS-------SSSSBCTS-----------HHHHHHTTCHH-
T ss_pred cccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCC-------ccccccCC-----------hhhhcccHhHH-
Confidence 333 788999999999999995 8999999999964321 01111110 1111110 111
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEeeccccCCCCcccHHHHHHHhhccCCCccccCCCCcceEEeecCCCceecCCCCccc
Q 008982 243 AHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEVVSGPGLKLV 322 (547)
Q Consensus 243 AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~l~~~p~~d~i~~~~DFiGiNyYt~~~v~~~~~~~~ 322 (547)
..|+++-|+..| +.+.=+ +......+ +...+ ..+.+. .+..-.-++|-||+.-.-..
T Consensus 159 --~~aF~~A~~~~P--~a~L~~-NDy~~~~~----~k~~~-~~~lv~---~l~~~gvpIdgIG~Q~H~~~---------- 215 (320)
T PF00331_consen 159 --ADAFRAAREADP--NAKLFY-NDYNIESP----AKRDA-YLNLVK---DLKARGVPIDGIGLQSHFDA---------- 215 (320)
T ss_dssp --HHHHHHHHHHHT--TSEEEE-EESSTTST----HHHHH-HHHHHH---HHHHTTHCS-EEEEEEEEET----------
T ss_pred --HHHHHHHHHhCC--CcEEEe-ccccccch----HHHHH-HHHHHH---HHHhCCCccceechhhccCC----------
Confidence 345555555554 344322 22222211 11111 111000 00111235899999754211
Q ss_pred CCCCCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCCCC-------ccchHHHHHHHHHHHHHHHHcCCCeEE
Q 008982 323 ETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDET-------DLIRRPYVIEHLLAVYAAMITGVPVIG 395 (547)
Q Consensus 323 ~~~~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~~~-------D~~Ri~yl~~hL~~v~~Ai~dGV~V~G 395 (547)
+.. |..+...|+++.+ .++||.|||.-+.+.+ +..+.+++++.+..+...-.. .|.|
T Consensus 216 --------~~~--~~~i~~~l~~~~~----~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~--~v~g 279 (320)
T PF00331_consen 216 --------GYP--PEQIWNALDRFAS----LGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPA--AVEG 279 (320)
T ss_dssp --------TSS--HHHHHHHHHHHHT----TTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHC--TEEE
T ss_pred --------CCC--HHHHHHHHHHHHH----cCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCcc--CCCE
Confidence 011 6678888877643 3599999999988643 335667777776654332212 8999
Q ss_pred EEEeecccccCCcCCCCCcc-ceEEEcCCCCccccccchHHHHHH
Q 008982 396 YLFWTISDNWEWADGYGPKF-GLVAVDRANNLARIPRPSYHLFTK 439 (547)
Q Consensus 396 Y~~WSLlDnfEW~~Gy~~rF-GL~~VD~~~~~~R~pK~Sa~~y~~ 439 (547)
.++|.+.|+..|........ +|+ |- .-.|||+++.+.+
T Consensus 280 it~Wg~~D~~sW~~~~~~~~~~lf--d~----~~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 280 ITWWGFTDGYSWRPDTPPDRPLLF--DE----DYQPKPAYDAIVD 318 (320)
T ss_dssp EEESSSBTTGSTTGGHSEG--SSB---T----TSBB-HHHHHHHH
T ss_pred EEEECCCCCCcccCCCCCCCCeeE--CC----CcCCCHHHHHHHh
Confidence 99999999999987633333 555 32 2479999887765
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.92 E-value=4.9e-08 Score=107.60 Aligned_cols=289 Identities=23% Similarity=0.341 Sum_probs=135.6
Q ss_pred ChHHHHHHHH-hcCCCeEEec--c--cccccCC-CCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhh
Q 008982 88 DPDIELKLAK-DTGVSVFRLG--I--DWSRIMP-AEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWA 161 (547)
Q Consensus 88 ~~~eDl~l~k-~lG~~~yRfs--I--~WsRI~P-~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL 161 (547)
++.+.+..++ ++|++.+||- + +..-... ++ +| ...+|+.-+ |.++|.|+++||+|+|.|-. +|.++
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~--~~-~~~Ynf~~l---D~i~D~l~~~g~~P~vel~f--~p~~~ 111 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDE--DG-IPPYNFTYL---DQILDFLLENGLKPFVELGF--MPMAL 111 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEET--TE-EEEE--HHH---HHHHHHHHHCT-EEEEEE-S--B-GGG
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhcccccc--CC-CCcCChHHH---HHHHHHHHHcCCEEEEEEEe--chhhh
Confidence 4566777765 9999999985 2 2222222 11 01 112788776 68999999999999999987 78776
Q ss_pred hh-------hCCCC-ChhhHHHHHHHHHHHH----HHhC-Ccce--eEEEecCcchhhhccccCCcCCCCCCchhhhhhc
Q 008982 162 GE-------YGGWK-LEKTIDYFMDFTRLVV----DSVS-DIVD--YWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATS 226 (547)
Q Consensus 162 ~~-------~GGW~-n~~~v~~F~~YA~~vf----~~fG-DrVk--~WiT~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~ 226 (547)
.. +.||. .|+..+.+.++++.++ +||| +.|. +|.++|||++..++. .+. .
T Consensus 112 ~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~-------~~~--~------ 176 (486)
T PF01229_consen 112 ASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWW-------DGT--P------ 176 (486)
T ss_dssp BSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSG-------GG---H------
T ss_pred cCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccC-------CCC--H------
Confidence 32 12232 2455666666665555 4555 2466 458999999754321 110 0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCCcccHHHHHHHhhccCCCccccCCCCcceEEe
Q 008982 227 ALPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGI 306 (547)
Q Consensus 227 ~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~l~~~p~~d~i~~~~DFiGi 306 (547)
..|. .+. ..+++++|+..| ..+||---.+ + +..+.. ....+ ++..-.-.+|||.+
T Consensus 177 ----~ey~----~ly---~~~~~~iK~~~p--~~~vGGp~~~-~----~~~~~~-~~~l~------~~~~~~~~~DfiS~ 231 (486)
T PF01229_consen 177 ----EEYF----ELY---DATARAIKAVDP--ELKVGGPAFA-W----AYDEWC-EDFLE------FCKGNNCPLDFISF 231 (486)
T ss_dssp ----HHHH----HHH---HHHHHHHHHH-T--TSEEEEEEEE-T----T-THHH-HHHHH------HHHHCT---SEEEE
T ss_pred ----HHHH----HHH---HHHHHHHHHhCC--CCcccCcccc-c----cHHHHH-HHHHH------HHhcCCCCCCEEEE
Confidence 1121 233 345666777665 6788753111 1 100111 11110 11122356899999
Q ss_pred ecCCCceecCCCCcccCCCCCCCC-C-CccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCCC-----Ccc-chHHHHHH
Q 008982 307 NYYGQEVVSGPGLKLVETDEYSES-G-RGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDE-----TDL-IRRPYVIE 378 (547)
Q Consensus 307 NyYt~~~v~~~~~~~~~~~~~s~~-g-~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~~-----~D~-~Ri~yl~~ 378 (547)
+.|........ .. ...... . ..+.| .+..+...+.+ -..++.|+++||-+.+-. +|. .+..|+..
T Consensus 232 H~y~~~~~~~~----~~-~~~~~~~~~~~~~~-~~~~~~~~~~~-e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k 304 (486)
T PF01229_consen 232 HSYGTDSAEDI----NE-NMYERIEDSRRLFP-ELKETRPIIND-EADPNLPLYITEWNASISPRNPQHDTCFKAAYIAK 304 (486)
T ss_dssp EEE-BESESE-----SS--EEEEB--HHHHHH-HHHHHHHHHHT-SSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH
T ss_pred Eeccccccccc----ch-hHHhhhhhHHHHHH-HHHHHHHHHhh-ccCCCCceeecccccccCCCcchhccccchhhHHH
Confidence 99986432110 00 000000 0 00111 12222222222 233357899999776532 232 34444443
Q ss_pred HHHHHHHHHHcCCCeEEEEEeecccccCCcCC----CCCccceEEEcCCCCccccccchHHHHHHHHH
Q 008982 379 HLLAVYAAMITGVPVIGYLFWTISDNWEWADG----YGPKFGLVAVDRANNLARIPRPSYHLFTKVVT 442 (547)
Q Consensus 379 hL~~v~~Ai~dGV~V~GY~~WSLlDnfEW~~G----y~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~ 442 (547)
. ++. .+|..+-++.+|++.|.||=..- +.--|||+..+ .++|+|++.|.-+-+
T Consensus 305 ~---lL~--~~~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~------gI~KPa~~A~~~L~~ 361 (486)
T PF01229_consen 305 N---LLS--NDGAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKL------GIPKPAYYAFQLLNK 361 (486)
T ss_dssp ----HHH--HGGGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECC------CEE-HHHHHHHHHTT
T ss_pred H---HHH--hhhhhhhhhhccchhhhhhccCCCCCceecchhhhhcc------CCCchHHHHHHHHHh
Confidence 3 111 34666777899999999984322 33458999765 499999988876543
No 20
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=98.82 E-value=9.3e-09 Score=109.45 Aligned_cols=107 Identities=26% Similarity=0.438 Sum_probs=84.6
Q ss_pred CChHHHHHHHHhcCCCeEEe-cccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhh--
Q 008982 87 SDPDIELKLAKDTGVSVFRL-GIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGE-- 163 (547)
Q Consensus 87 ~~~~eDl~l~k~lG~~~yRf-sI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~-- 163 (547)
..+++|+++||++|+|.+|+ .++|++|+|.+ |.+|++.+ +++|+.+.++||++++.+.....|.||.+
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e------G~ydF~~l---D~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~ 80 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE------GQYDFSWL---DRVLDLAAKHGIKVILGTPTAAPPAWLYDKY 80 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT------TB---HHH---HHHHHHHHCTT-EEEEEECTTTS-HHHHCCS
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC------CeeecHHH---HHHHHHHHhccCeEEEEecccccccchhhhc
Confidence 57899999999999999996 67999999985 89999775 68999999999999999999999999852
Q ss_pred --------h------CCC-----CChhhHHHHHHHHHHHHHHhCCc--ceeEEEecCcch
Q 008982 164 --------Y------GGW-----KLEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEPHV 202 (547)
Q Consensus 164 --------~------GGW-----~n~~~v~~F~~YA~~vf~~fGDr--Vk~WiT~NEP~~ 202 (547)
. |+. .++...+.+.++++.++++|++. |-.|.+-|||..
T Consensus 81 Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 81 PEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp GCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred ccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 1 222 24667788888899999999985 889999999965
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=8.4e-06 Score=84.23 Aligned_cols=262 Identities=23% Similarity=0.349 Sum_probs=155.0
Q ss_pred ccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEE-Ee-cCCCCchhhhhhCCCCChhhHHHHHHHHHHHHH
Q 008982 108 IDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVML-TL-FHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVD 185 (547)
Q Consensus 108 I~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiV-TL-~HwDlP~wL~~~GGW~n~~~v~~F~~YA~~vf~ 185 (547)
+-|.-|+|.. |.+|+++- +.+++.+++|||.--- || .|--.|.|+... -+..+.+.+..+++-..|++
T Consensus 67 mKwe~i~p~~------G~f~Fe~A---D~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~~-e~~~~~~~~~~e~hI~tV~~ 136 (345)
T COG3693 67 MKWEAIEPER------GRFNFEAA---DAIANFARKHNMPLHGHTLVWHSQVPDWLFGD-ELSKEALAKMVEEHIKTVVG 136 (345)
T ss_pred cccccccCCC------CccCccch---HHHHHHHHHcCCeeccceeeecccCCchhhcc-ccChHHHHHHHHHHHHHHHH
Confidence 3588888863 89999887 5799999999987432 33 355689998521 15668899999999999999
Q ss_pred HhCCcceeEEEecCcchhhhccccCCcCCCCCCchhhhhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Q 008982 186 SVSDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVA 265 (547)
Q Consensus 186 ~fGDrVk~WiT~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~ 265 (547)
||.+.|..|=.+|||-- ...++..-.|--+.. .+ .+ + ..|++.-|+..| +++.=+
T Consensus 137 rYkg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~----------gp-d~------I----~~aF~~AreadP--~AkL~~- 191 (345)
T COG3693 137 RYKGSVASWDVVNEAVD-DQGSLRRSAWYDGGT----------GP-DY------I----KLAFHIAREADP--DAKLVI- 191 (345)
T ss_pred hccCceeEEEecccccC-CCchhhhhhhhccCC----------cc-HH------H----HHHHHHHHhhCC--CceEEe-
Confidence 99999999999999854 222222111111000 00 11 1 235566666655 555422
Q ss_pred eeccccCCCCcccHHHHH--HHhhccCCCccccCCC-CcceEEeecCCCceecCCCCcccCCCCCCCCCCccCchHHHHH
Q 008982 266 HHVSFMRPYGLFDVTAVT--LANTLTTFPYVDSISD-RLDFIGINYYGQEVVSGPGLKLVETDEYSESGRGVYPDGLFRV 342 (547)
Q Consensus 266 ~~~~~~~P~~~~D~~aa~--~~~~l~~~p~~d~i~~-~~DFiGiNyYt~~~v~~~~~~~~~~~~~s~~g~~i~P~GL~~~ 342 (547)
+..+ .++.++.. ..|-+. .+.. +| +.|=+|++-- ++ .+|... +-.+..
T Consensus 192 NDY~------ie~~~~kr~~~~nlI~---~Lke-kG~pIDgiG~QsH----~~--------------~~~~~~-~~~~~a 242 (345)
T COG3693 192 NDYS------IEGNPAKRNYVLNLIE---ELKE-KGAPIDGIGIQSH----FS--------------GDGPSI-EKMRAA 242 (345)
T ss_pred eccc------ccCChHHHHHHHHHHH---HHHH-CCCCccceeeeee----ec--------------CCCCCH-HHHHHH
Confidence 1111 11222211 111100 0001 34 4899999753 11 122222 223334
Q ss_pred HHHHHHHhCCCCCcEEEeecCCCC--CC-ccchHHHHHHH-H--HHHHHHHHcCCCeEEEEEeecccccCCcCCCCCccc
Q 008982 343 LHQFHERYKHLNLPFIITENGVSD--ET-DLIRRPYVIEH-L--LAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFG 416 (547)
Q Consensus 343 L~~i~~rY~~~~~PI~ITENG~~~--~~-D~~Ri~yl~~h-L--~~v~~Ai~dGV~V~GY~~WSLlDnfEW~~Gy~~rFG 416 (547)
|..+.+. +.||+|||--+.+ .. +..| .|++.. . ..-.......-.|.+.+.|.++|+++|..|..++++
T Consensus 243 ~~~~~k~----Gl~i~VTELD~~~~~P~~~~p~-~~~~~~~~~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~ 317 (345)
T COG3693 243 LLKFSKL----GLPIYVTELDMSDYTPDSGAPR-LYLQKAASRAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRD 317 (345)
T ss_pred HHHHhhc----CCCceEEEeeeeccCCCCccHH-HHHHHHHHHHHHHHHHHhcccccceEEEeeeccCcccccCCccCcC
Confidence 4443332 4899999998885 22 2223 233332 1 111222345666999999999999999999888885
Q ss_pred ----eEEEcCCCCccccccchHHHHHHHHHc
Q 008982 417 ----LVAVDRANNLARIPRPSYHLFTKVVTT 443 (547)
Q Consensus 417 ----L~~VD~~~~~~R~pK~Sa~~y~~ii~~ 443 (547)
|. +|- .=.||+...+.+++...
T Consensus 318 ~~rPl~-~D~----n~~pKPa~~aI~e~la~ 343 (345)
T COG3693 318 GLRPLL-FDD----NYQPKPAYKAIAEVLAP 343 (345)
T ss_pred CCCCcc-cCC----CCCcchHHHHHHHHhcC
Confidence 22 232 23799999999877654
No 22
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.26 E-value=6e-05 Score=77.80 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=60.0
Q ss_pred CChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCC
Q 008982 87 SDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGG 166 (547)
Q Consensus 87 ~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GG 166 (547)
..++.|+.+||++|+|++|++- .|.. .++++.|=+.||-++.-+..+..-.|. ..|-
T Consensus 36 ~~~~~d~~l~k~~G~N~iR~~h-----~p~~-----------------~~~~~~cD~~GilV~~e~~~~~~~~~~-~~~~ 92 (298)
T PF02836_consen 36 EAMERDLELMKEMGFNAIRTHH-----YPPS-----------------PRFYDLCDELGILVWQEIPLEGHGSWQ-DFGN 92 (298)
T ss_dssp HHHHHHHHHHHHTT-SEEEETT-----S--S-----------------HHHHHHHHHHT-EEEEE-S-BSCTSSS-STSC
T ss_pred HHHHHHHHHHHhcCcceEEccc-----ccCc-----------------HHHHHHHhhcCCEEEEeccccccCccc-cCCc
Confidence 4678999999999999999943 2321 257778888999998766442111111 1110
Q ss_pred ----CCChhhHHHHHHHHHHHHHHhCCc--ceeEEEecCc
Q 008982 167 ----WKLEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEP 200 (547)
Q Consensus 167 ----W~n~~~v~~F~~YA~~vf~~fGDr--Vk~WiT~NEP 200 (547)
-.+++..+.+.+=++.+++++... |-.|...||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 93 CNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 125778888888888888888764 8899999998
No 23
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=0.003 Score=65.03 Aligned_cols=245 Identities=23% Similarity=0.336 Sum_probs=136.5
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCC-CCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec---CCCCchhhhhhC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEP-VNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF---HHSLPAWAGEYG 165 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~-~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~---HwDlP~wL~~~G 165 (547)
++=++.||+.|||.+|+-| |- -|... .+|-.|.-|. ++---++-.+..++||++++.+| ||.=|.-..+--
T Consensus 66 qD~~~iLK~~GvNyvRlRv-wn--dP~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPk 140 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-WN--DPYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPK 140 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-ec--CCccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcH
Confidence 4457999999999999966 31 12210 0111122221 22334677889999999999988 455555443345
Q ss_pred CCCC---hhhHHHHHHHHHHHHHHh---CCcceeEEEecCcchhhhccccCCcCCCCCCchhhhhhccCCchhHHHHHHH
Q 008982 166 GWKL---EKTIDYFMDFTRLVVDSV---SDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMHW 239 (547)
Q Consensus 166 GW~n---~~~v~~F~~YA~~vf~~f---GDrVk~WiT~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h~ 239 (547)
.|++ +..-...-+|.+.+...+ |-....-..=||-+- |+ .||-|... .+.. +..
T Consensus 141 aW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~~------------~f~k-~a~ 200 (403)
T COG3867 141 AWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEGR------------NFDK-MAA 200 (403)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCC----ce---eccCCCCc------------ChHH-HHH
Confidence 6765 233344455566555555 545556667788653 22 36655431 1211 234
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCCcccHHHHHHHhhccCCCccccCCCCcceEEeecCCCceecCCCC
Q 008982 240 MAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEVVSGPGL 319 (547)
Q Consensus 240 ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~l~~~p~~d~i~~~~DFiGiNyYt~~~v~~~~~ 319 (547)
|+. ++++++|+..+ ..+| ++|...-...+..... .+.++ .-.-.+|.||++||+.- ..
T Consensus 201 L~n---~g~~avrev~p--~ikv--~lHla~g~~n~~y~~~----fd~lt------k~nvdfDVig~SyYpyW--hg--- 258 (403)
T COG3867 201 LLN---AGIRAVREVSP--TIKV--ALHLAEGENNSLYRWI----FDELT------KRNVDFDVIGSSYYPYW--HG--- 258 (403)
T ss_pred HHH---HHhhhhhhcCC--CceE--EEEecCCCCCchhhHH----HHHHH------HcCCCceEEeeeccccc--cC---
Confidence 554 45666667654 3344 5555432211111111 11111 11346899999999632 10
Q ss_pred cccCCCCCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCC-C--------------Cc-------cchHHHHH
Q 008982 320 KLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD-E--------------TD-------LIRRPYVI 377 (547)
Q Consensus 320 ~~~~~~~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~-~--------------~D-------~~Ri~yl~ 377 (547)
--..|...|..+..||+ +.++|.|.+..- . .+ .-+..+++
T Consensus 259 ---------------tl~nL~~nl~dia~rY~---K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vr 320 (403)
T COG3867 259 ---------------TLNNLTTNLNDIASRYH---KDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVR 320 (403)
T ss_pred ---------------cHHHHHhHHHHHHHHhc---CeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHH
Confidence 11247778899999996 789999998751 0 11 12445666
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeec
Q 008982 378 EHLLAVYAAMITGVPVIGYLFWTI 401 (547)
Q Consensus 378 ~hL~~v~~Ai~dGV~V~GY~~WSL 401 (547)
+-+++|..- -+.+=.|.|+|--
T Consensus 321 Dvie~V~nv--p~~~GlGvFYWEp 342 (403)
T COG3867 321 DVIEAVKNV--PKSNGLGVFYWEP 342 (403)
T ss_pred HHHHHHHhC--CCCCceEEEEecc
Confidence 666554221 3456789999954
No 24
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=97.62 E-value=0.0041 Score=74.75 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=60.4
Q ss_pred CCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEe----cCCCCchhh
Q 008982 86 WSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL----FHHSLPAWA 161 (547)
Q Consensus 86 ~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL----~HwDlP~wL 161 (547)
...+++||++||++|+|++|+| ..|.. ..+.+.|=+.||-+|.-. +.|.....+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~-----------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~ 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND-----------------PRFYELCDIYGLFVMAETDVESHGFANVGDI 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC-----------------HHHHHHHHHCCCEEEECCcccccCccccccc
Confidence 3567899999999999999996 35642 246777888999877643 112111000
Q ss_pred hhhCCC--CChhhHHHHHHHHHHHHHHhCCc--ceeEEEecCc
Q 008982 162 GEYGGW--KLEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEP 200 (547)
Q Consensus 162 ~~~GGW--~n~~~v~~F~~YA~~vf~~fGDr--Vk~WiT~NEP 200 (547)
.| .++...+.|.+=++.++++.... |-.|..-||.
T Consensus 412 ----~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 ----SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred ----ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 01 23445567777788899998765 7788888885
No 25
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.00037 Score=79.36 Aligned_cols=124 Identities=23% Similarity=0.349 Sum_probs=89.9
Q ss_pred CccccCCCCChHHHHHHHHhcCCCeEEe-cccccccCCCCCCCCCcCcCCHHHHHHHHHH-HHHHHHcCCeEEEEe-cCC
Q 008982 79 PEERLRFWSDPDIELKLAKDTGVSVFRL-GIDWSRIMPAEPVNGLKETVNFAALERYKWI-INRVRSYGMKVMLTL-FHH 155 (547)
Q Consensus 79 ~~~~~~~~~~~~eDl~l~k~lG~~~yRf-sI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~l-Id~L~~~GI~PiVTL-~Hw 155 (547)
|+...+ ..|++|++.||++|+|++|. -++|++++|++ |.+|...+ |.. |+.+-+.||..++.= --.
T Consensus 24 p~~~p~--~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e------G~fdf~~~---D~~~l~~a~~~Gl~vil~t~P~g 92 (673)
T COG1874 24 PERWPR--ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEE------GKFDFTWL---DEIFLERAYKAGLYVILRTGPTG 92 (673)
T ss_pred hHHCCH--HHHHHHHHHHHHhCCCeeEeeeEEeeccCccc------cccCcccc---hHHHHHHHHhcCceEEEecCCCC
Confidence 444444 56889999999999999999 55999999985 89999855 445 999999999999866 445
Q ss_pred CCchhhh----------------hhCCCCChhhHHH-HHHHHHH----HHHH-hCCc--ceeEEEecCcch-hhhccccC
Q 008982 156 SLPAWAG----------------EYGGWKLEKTIDY-FMDFTRL----VVDS-VSDI--VDYWVTFNEPHV-FCMLTYCA 210 (547)
Q Consensus 156 DlP~wL~----------------~~GGW~n~~~v~~-F~~YA~~----vf~~-fGDr--Vk~WiT~NEP~~-~~~~gY~~ 210 (547)
.-|.|+. ..|+|.+-+.+.- +..|++. +.+| ||+. |--|-+=||=.. .|...|+.
T Consensus 93 ~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~ 172 (673)
T COG1874 93 APPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQ 172 (673)
T ss_pred CCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccH
Confidence 5677763 2488976664444 7778777 5666 6653 777888887433 34444444
Q ss_pred CcC
Q 008982 211 GTW 213 (547)
Q Consensus 211 G~~ 213 (547)
..|
T Consensus 173 ~~f 175 (673)
T COG1874 173 AAF 175 (673)
T ss_pred HHH
Confidence 333
No 26
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.0011 Score=71.83 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=83.7
Q ss_pred CCCCCh-----HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCC-HHHHHHHHHHHHHHHHcCCeEEEEecCCCC
Q 008982 84 RFWSDP-----DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVN-FAALERYKWIINRVRSYGMKVMLTLFHHSL 157 (547)
Q Consensus 84 ~~~~~~-----~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN-~~gl~~Y~~lId~L~~~GI~PiVTL~HwDl 157 (547)
.+..+| ++|+..||+.|+|++|+.|.|-.+.+.. +....+. ...+.+-+++|+..++.||.+++.||+..-
T Consensus 65 ~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~---~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~ 141 (407)
T COG2730 65 LLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATD---GDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPG 141 (407)
T ss_pred cchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccC---CCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCC
Confidence 445556 8999999999999999999965554421 0112232 444558899999999999999999999653
Q ss_pred chhhhh----hCCCC-ChhhHHHHHHHHHHHHHHhCCc--ceeEEEecCcch
Q 008982 158 PAWAGE----YGGWK-LEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEPHV 202 (547)
Q Consensus 158 P~wL~~----~GGW~-n~~~v~~F~~YA~~vf~~fGDr--Vk~WiT~NEP~~ 202 (547)
.+--.+ .+.+. ..+.++.+.+--+.++.+|++. |--..++|||+-
T Consensus 142 ~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 142 GNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 232221 12233 3567899999999999999973 444678999985
No 27
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.17 E-value=0.0027 Score=63.91 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=56.9
Q ss_pred CCcceEEeecCCCceecCCCCcccCCCCCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCC----CCccchHH
Q 008982 299 DRLDFIGINYYGQEVVSGPGLKLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSD----ETDLIRRP 374 (547)
Q Consensus 299 ~~~DFiGiNyYt~~~v~~~~~~~~~~~~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~----~~D~~Ri~ 374 (547)
..+||++||+|.. .+.++...|..++++|+ +||+|||.|+.+ .++.....
T Consensus 136 ~~~D~iavH~Y~~-----------------------~~~~~~~~i~~~~~~~~---kPIWITEf~~~~~~~~~~~~~~~~ 189 (239)
T PF11790_consen 136 CRVDFIAVHWYGG-----------------------DADDFKDYIDDLHNRYG---KPIWITEFGCWNGGSQGSDEQQAS 189 (239)
T ss_pred CCccEEEEecCCc-----------------------CHHHHHHHHHHHHHHhC---CCEEEEeecccCCCCCCCHHHHHH
Confidence 4799999999921 13468889999999996 999999999753 34445566
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeecccccC
Q 008982 375 YVIEHLLAVYAAMITGVPVIGYLFWTISDNWE 406 (547)
Q Consensus 375 yl~~hL~~v~~Ai~dGV~V~GY~~WSLlDnfE 406 (547)
|+++.+.. ++.---|.+|++.+.++...
T Consensus 190 fl~~~~~~----ld~~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 190 FLRQALPW----LDSQPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHH----HhcCCCeeEEEecccccccC
Confidence 77766554 44446699999998544433
No 28
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.99 E-value=0.24 Score=53.26 Aligned_cols=274 Identities=18% Similarity=0.243 Sum_probs=112.1
Q ss_pred HhcCCCeEEecc---cc------------cccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhh
Q 008982 97 KDTGVSVFRLGI---DW------------SRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWA 161 (547)
Q Consensus 97 k~lG~~~yRfsI---~W------------sRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL 161 (547)
+.+|++.+||.| ++ .|.+-. ....|.+|+.+=+--+.++++++++|+.-++ +|-+.-|.|+
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f---~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~M 132 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESF---LPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWM 132 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----S---B-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGG
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccc---cCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHH
Confidence 458999999887 33 232111 1124677776555567799999999999876 7777777776
Q ss_pred hhhC----C-----CCChhhHHHHHHHHHHHHHHh---CCcceeEEEecCcchhhhccccCCcCCCCCCchhhhhhccCC
Q 008982 162 GEYG----G-----WKLEKTIDYFMDFTRLVVDSV---SDIVDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALP 229 (547)
Q Consensus 162 ~~~G----G-----W~n~~~v~~F~~YA~~vf~~f---GDrVk~WiT~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~ 229 (547)
...| + =+.++..+.|++|-..|+++| |-.|+|-.+||||..- + .+ |.. .|++-.
T Consensus 133 T~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~-W-~~--~~Q-EG~~~~--------- 198 (384)
T PF14587_consen 133 TKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWN-W-AG--GSQ-EGCHFT--------- 198 (384)
T ss_dssp SSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS--G-G----SS--B-------------
T ss_pred hcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCC-C-CC--CCc-CCCCCC---------
Confidence 4322 1 245778888998888888888 4479999999999832 2 11 100 111100
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCCc-ccHH-HHHHHhhccC---CCccccCCCCcceE
Q 008982 230 TGVFNQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGL-FDVT-AVTLANTLTT---FPYVDSISDRLDFI 304 (547)
Q Consensus 230 ~~~~~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~-~D~~-aa~~~~~l~~---~p~~d~i~~~~DFi 304 (547)
. .-..-++.+-. ..+++.. ...+|.+.-...+-+-+.. .+.. .....+.++. -.++-.+..-...|
T Consensus 199 --~--~e~a~vI~~L~---~~L~~~G--L~t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~s~~yi~~l~~v~~~i 269 (384)
T PF14587_consen 199 --N--EEQADVIRALD---KALKKRG--LSTKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPDSSTYIGDLPNVPNII 269 (384)
T ss_dssp --H--HHHHHHHHHHH---HHHHHHT---S-EEEEEEESSGGGGS---S-TTS---HHHHHHSTTSTT--TT-TTEEEEE
T ss_pred --H--HHHHHHHHHHH---HHHHhcC--CCceEEecchhhHHHHhhccCCchhhhhhHHhhcCCCchhhhhccccchhhe
Confidence 0 00112222211 2233332 2456766655554333221 0000 0000011100 01111122222333
Q ss_pred EeecCCCceecCCCCcccCCCCCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCCCC-------ccchHHHHH
Q 008982 305 GINYYGQEVVSGPGLKLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDET-------DLIRRPYVI 377 (547)
Q Consensus 305 GiNyYt~~~v~~~~~~~~~~~~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~~~-------D~~Ri~yl~ 377 (547)
+-+-|-+ +..+. .-..+|+.|..-.++|+. +..++-||-.+-..+ ...|-..+.
T Consensus 270 ~~HsYwt-----------------~~~~~-~l~~~R~~~~~~~~~~~~-~~~~wqtE~~il~~~~~~~~~~g~~~~~~m~ 330 (384)
T PF14587_consen 270 SGHSYWT-----------------DSPWD-DLRDIRKQLADKLDKYSP-GLKYWQTEYCILGDNYEIIEGGGYDRDLGMD 330 (384)
T ss_dssp EE--TT------------------SSSHH-HHHHHHHHHHHHHHTTSS---EEEE----S----TTT-SSS-HHHHHHH-
T ss_pred eeccccc-----------------CCCHH-HHHHHHHHHHHHHHhhCc-CCceeeeeeeeccCCcccccCCCcccchhHH
Confidence 3333321 11110 011345566666667732 478999999876421 112555554
Q ss_pred HHHHHHHHHHH---cCCCeEEEEEeecccccCCcCCCCCccceEEEcCC
Q 008982 378 EHLLAVYAAMI---TGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRA 423 (547)
Q Consensus 378 ~hL~~v~~Ai~---dGV~V~GY~~WSLlDnfEW~~Gy~~rFGL~~VD~~ 423 (547)
-.|. |.+-|. -=.++..--+|.-+.-+.+.+ |||+||..
T Consensus 331 ~aLy-~arviH~DL~~anassW~wW~a~~~~~ykd------gli~i~~~ 372 (384)
T PF14587_consen 331 TALY-VARVIHNDLTYANASSWQWWTAISPYDYKD------GLIYIDKN 372 (384)
T ss_dssp -HHH-HHHHHHHHHHTS--SEEEEEESEESS--SS------SSEEEE-S
T ss_pred HHHH-HHHHHHhhhhhcccchhHHHHHhccccccC------ceEEEcCC
Confidence 4443 233342 245788899999887666555 99999975
No 29
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.72 E-value=0.091 Score=63.46 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=59.7
Q ss_pred CChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec---CCCCchhhhh
Q 008982 87 SDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF---HHSLPAWAGE 163 (547)
Q Consensus 87 ~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~---HwDlP~wL~~ 163 (547)
.++++||++||++|+|++|+| ..|.. ..+.+.|=+.||-+|--.. |--.|.. .
T Consensus 371 e~~~~di~lmK~~g~NaVR~s-----HyP~~-----------------p~fydlcDe~GilV~dE~~~e~hg~~~~~--~ 426 (1027)
T PRK09525 371 ETMVQDILLMKQHNFNAVRCS-----HYPNH-----------------PLWYELCDRYGLYVVDEANIETHGMVPMN--R 426 (1027)
T ss_pred HHHHHHHHHHHHCCCCEEEec-----CCCCC-----------------HHHHHHHHHcCCEEEEecCccccCCcccc--C
Confidence 456899999999999999996 34532 1355677788998886642 2111110 0
Q ss_pred hCCCCChhhHHHHHHHHHHHHHHhCCc--ceeEEEecCc
Q 008982 164 YGGWKLEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEP 200 (547)
Q Consensus 164 ~GGW~n~~~v~~F~~YA~~vf~~fGDr--Vk~WiT~NEP 200 (547)
...+++..+.+.+=++.++++.... |-.|...||+
T Consensus 427 --~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~ 463 (1027)
T PRK09525 427 --LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNES 463 (1027)
T ss_pred --CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCC
Confidence 0124566677777788888888775 7788888885
No 30
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=96.46 E-value=0.031 Score=58.40 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=47.7
Q ss_pred hHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCch-hhhhhCCC
Q 008982 89 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPA-WAGEYGGW 167 (547)
Q Consensus 89 ~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~-wL~~~GGW 167 (547)
.+.|+.+||+||+|+.|.= -|-|. . + .+.-...|-+.||-.++.|-- |. .+....-|
T Consensus 55 C~rDi~~l~~LgiNtIRVY----~vdp~---------~-----n-Hd~CM~~~~~aGIYvi~Dl~~---p~~sI~r~~P~ 112 (314)
T PF03198_consen 55 CKRDIPLLKELGINTIRVY----SVDPS---------K-----N-HDECMSAFADAGIYVILDLNT---PNGSINRSDPA 112 (314)
T ss_dssp HHHHHHHHHHHT-SEEEES-------TT---------S--------HHHHHHHHHTT-EEEEES-B---TTBS--TTS--
T ss_pred HHHhHHHHHHcCCCEEEEE----EeCCC---------C-----C-HHHHHHHHHhCCCEEEEecCC---CCccccCCCCc
Confidence 3899999999999999973 23343 1 2 267888899999999999963 42 22222211
Q ss_pred CChhhHHHHHHHHHHHHHHhCC--cceeEEEecC
Q 008982 168 KLEKTIDYFMDFTRLVVDSVSD--IVDYWVTFNE 199 (547)
Q Consensus 168 ~n~~~v~~F~~YA~~vf~~fGD--rVk~WiT~NE 199 (547)
. .=....|.+|..++ +.|.. -|--...=||
T Consensus 113 ~-sw~~~l~~~~~~vi-d~fa~Y~N~LgFf~GNE 144 (314)
T PF03198_consen 113 P-SWNTDLLDRYFAVI-DAFAKYDNTLGFFAGNE 144 (314)
T ss_dssp -----HHHHHHHHHHH-HHHTT-TTEEEEEEEES
T ss_pred C-CCCHHHHHHHHHHH-HHhccCCceEEEEecce
Confidence 1 11346677776654 44442 2333444455
No 31
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=96.37 E-value=0.0066 Score=63.83 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=60.2
Q ss_pred ChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec-----CC---CCch
Q 008982 88 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF-----HH---SLPA 159 (547)
Q Consensus 88 ~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~-----Hw---DlP~ 159 (547)
.|++-++.||++|+|++-+-|.|.-.+|.+ |.+|++|..=-+.+|+.|.++|+.+++-.= -| .+|.
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~------g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~ 98 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE------GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPA 98 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT------TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--G
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC------CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhh
Confidence 578899999999999999999999999985 899999876678999999999999776432 13 3999
Q ss_pred hhhhh-CCCC---ChhhHHHHHHHHHHHHHHh
Q 008982 160 WAGEY-GGWK---LEKTIDYFMDFTRLVVDSV 187 (547)
Q Consensus 160 wL~~~-GGW~---n~~~v~~F~~YA~~vf~~f 187 (547)
||... +... ++...+.-.+|.+.+++..
T Consensus 99 Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~ 130 (319)
T PF01301_consen 99 WLLRKPDIRLRTNDPPFLEAVERWYRALAKII 130 (319)
T ss_dssp GGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccchhHHHHHHHHHHHHHHHH
Confidence 99765 3333 2334444444444444444
No 32
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.053 Score=59.22 Aligned_cols=271 Identities=20% Similarity=0.160 Sum_probs=156.1
Q ss_pred hHHHHHHHHhcCCCeEEecccc-cccCCCCCCCCCcCcCCHHH-HHHHHHHHHHHHHcCCeEEEEec----CCCCchhhh
Q 008982 89 PDIELKLAKDTGVSVFRLGIDW-SRIMPAEPVNGLKETVNFAA-LERYKWIINRVRSYGMKVMLTLF----HHSLPAWAG 162 (547)
Q Consensus 89 ~~eDl~l~k~lG~~~yRfsI~W-sRI~P~~~~~G~~g~vN~~g-l~~Y~~lId~L~~~GI~PiVTL~----HwDlP~wL~ 162 (547)
.+.|++.++.+|++..|.+|-= ... -+. .|..|.+. +.+-..+++.+...+|+.++||. |+.-=.|--
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc-~d~-----~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~I 101 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDC-RDK-----EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRI 101 (587)
T ss_pred hhcccccccCccceeEEEEEecCcch-hhh-----hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEe
Confidence 3579999999999999999521 221 111 36777766 88999999999999999999987 332222211
Q ss_pred h-hCC------CCChhhHHHHHHHHHHHHHHhCCc--ceeEEEecCcchhhhccccCCcCCCCCCchhhhhhccCCchhH
Q 008982 163 E-YGG------WKLEKTIDYFMDFTRLVVDSVSDI--VDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVF 233 (547)
Q Consensus 163 ~-~GG------W~n~~~v~~F~~YA~~vf~~fGDr--Vk~WiT~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~ 233 (547)
. .|| -..+.+..-|.+|.+.+++.|+.. +--|+-=|||.+-+ |.
T Consensus 102 pwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~----------p~----------------- 154 (587)
T COG3934 102 PWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEA----------PI----------------- 154 (587)
T ss_pred ecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccc----------cC-----------------
Confidence 0 011 224667788999999999988764 44577777764311 10
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEeeccccCCCCcccHHHHHHHhhccCCCccccCCCCcceEEeecCCCce
Q 008982 234 NQAMHWMAIAHSKAYDYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEV 313 (547)
Q Consensus 234 ~~a~h~ll~AHa~A~~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~l~~~p~~d~i~~~~DFiGiNyYt~~~ 313 (547)
...+++.=...-+.+|+...+.. .|.+ .++..|+. ..-|+ .++...||-+.+-|. ++
T Consensus 155 --s~N~f~~w~~emy~yiK~ldd~h--lvsv---GD~~sp~~-------------~~~py--N~r~~vDya~~hLY~-hy 211 (587)
T COG3934 155 --SVNNFWDWSGEMYAYIKWLDDGH--LVSV---GDPASPWP-------------QYAPY--NARFYVDYAANHLYR-HY 211 (587)
T ss_pred --ChhHHHHHHHHHHHHhhccCCCC--eeec---CCcCCccc-------------ccCCc--ccceeeccccchhhh-hc
Confidence 01223333355667777776532 2322 12222211 00111 456678998888885 22
Q ss_pred ecCCCCcccCCCCCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCCCCccch--HHHHHHHHHHHHHHHHcCC
Q 008982 314 VSGPGLKLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDETDLIR--RPYVIEHLLAVYAAMITGV 391 (547)
Q Consensus 314 v~~~~~~~~~~~~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~~~D~~R--i~yl~~hL~~v~~Ai~dGV 391 (547)
...+ ++..+ .+|=.-+ +.+-..-+ -.|+..-|.|+++..-..| +.++---| |..-|
T Consensus 212 d~sl---------~~r~s-~~yg~~~----l~i~~~~g--~~pV~leefGfsta~g~e~s~ayfiw~~l-----al~~g- 269 (587)
T COG3934 212 DTSL---------VSRVS-TVYGKPY----LDIPTIMG--WQPVNLEEFGFSTAFGQENSPAYFIWIRL-----ALDTG- 269 (587)
T ss_pred cCCh---------hheee-eeecchh----hccchhcc--cceeeccccCCcccccccccchhhhhhhh-----HHhhc-
Confidence 1110 01110 0110001 11111122 2799999999997532222 22222112 45445
Q ss_pred CeEEEEEeecccccCCcCC-------CCCccceEEEcCCCCccccccchHHHHHHHHHcC
Q 008982 392 PVIGYLFWTISDNWEWADG-------YGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTG 444 (547)
Q Consensus 392 ~V~GY~~WSLlDnfEW~~G-------y~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~ 444 (547)
-.|-++|.|.|--+=.++ ....||++.-|- .+|-++.-|.++..+.
T Consensus 270 -gdGaLiwclsdf~~gsdd~ey~w~p~el~fgiIradg------pek~~a~~~~~fsn~~ 322 (587)
T COG3934 270 -GDGALIWCLSDFHLGSDDSEYTWGPMELEFGIIRADG------PEKIDAMTLHIFSNNW 322 (587)
T ss_pred -CCceEEEEecCCccCCCCCCCccccccceeeeecCCC------chhhhHHHHHHhcccc
Confidence 357899999988754443 234789987663 6788999888887653
No 33
>PLN00197 beta-amylase; Provisional
Probab=95.42 E-value=0.054 Score=60.13 Aligned_cols=104 Identities=23% Similarity=0.416 Sum_probs=80.9
Q ss_pred hHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCC------------C
Q 008982 89 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHH------------S 156 (547)
Q Consensus 89 ~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~Hw------------D 156 (547)
.+..|+.||.+||+.+-+.+=|--+++++| +.+|++| |++|++.+++.|++..+.|--+ -
T Consensus 129 l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p-----~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~Ip 200 (573)
T PLN00197 129 MKASLQALKSAGVEGIMMDVWWGLVERESP-----GVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIP 200 (573)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCC-----CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 578999999999999999999999999874 7899865 8999999999999987776433 4
Q ss_pred Cchhhhh------------hCCCCC----------------hhhHHHHHHHHHHHHHHhCCcceeEEEecCcch
Q 008982 157 LPAWAGE------------YGGWKL----------------EKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 202 (547)
Q Consensus 157 lP~wL~~------------~GGW~n----------------~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~ 202 (547)
||+|+.+ .-|-.| +.-++.+.+|-+-.-.+|.+..+ -||.|..+
T Consensus 201 LP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred CCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 9999742 123222 22368889998888888887665 36777654
No 34
>PLN02803 beta-amylase
Probab=95.22 E-value=0.054 Score=59.93 Aligned_cols=104 Identities=21% Similarity=0.384 Sum_probs=80.0
Q ss_pred hHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCC------------C
Q 008982 89 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHH------------S 156 (547)
Q Consensus 89 ~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~Hw------------D 156 (547)
.+..|+.||.+||+.+-+.+=|--+++++| +.+|++| |++|++.+++.|++..+.|--+ -
T Consensus 109 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p-----~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 180 (548)
T PLN02803 109 MNASLMALRSAGVEGVMVDAWWGLVEKDGP-----MKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIP 180 (548)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeeeeccCCC-----CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 457999999999999999999999999864 7899865 8999999999999987776433 4
Q ss_pred Cchhhhh------------hCCCCC----------------hhhHHHHHHHHHHHHHHhCCcceeEEEecCcch
Q 008982 157 LPAWAGE------------YGGWKL----------------EKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 202 (547)
Q Consensus 157 lP~wL~~------------~GGW~n----------------~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~ 202 (547)
||+|+.+ .-|-.| +.-++.+.+|-+-.-++|.+... -||.|..+
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 9999742 122222 33447788888888888887654 47777654
No 35
>PLN02161 beta-amylase
Probab=95.07 E-value=0.056 Score=59.57 Aligned_cols=110 Identities=19% Similarity=0.358 Sum_probs=83.4
Q ss_pred cCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec-CC------
Q 008982 83 LRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF-HH------ 155 (547)
Q Consensus 83 ~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~-Hw------ 155 (547)
...+.-.+..|+.||.+||+.+-+.+=|--+++++| +.+|+++ |++|++.+++.|++..+.|- |=
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p-----~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNvG 184 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSP-----LEFKWSL---YEELFRLISEAGLKLHVALCFHSNMHLFG 184 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCC-----CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCC
Confidence 344555678999999999999999999999999874 7899865 89999999999999877764 42
Q ss_pred -----CCchhhhh------------hCCCCC----------------hhhHHHHHHHHHHHHHHhCCcceeEEEecCcch
Q 008982 156 -----SLPAWAGE------------YGGWKL----------------EKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 202 (547)
Q Consensus 156 -----DlP~wL~~------------~GGW~n----------------~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~ 202 (547)
-||+|+.+ .-|-.| +.-++.+.+|-+-.-++|.+... -||.|..+
T Consensus 185 d~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 185 GKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred CccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 39999742 223222 22447888888888888887654 36777654
No 36
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=95.06 E-value=0.025 Score=60.90 Aligned_cols=104 Identities=27% Similarity=0.497 Sum_probs=77.9
Q ss_pred ChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEe-cC-----------C
Q 008982 88 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL-FH-----------H 155 (547)
Q Consensus 88 ~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL-~H-----------w 155 (547)
-.+.+|+.||.+||+.+-..+=|--+++.+| +.+|+++ |++|++.+++.|++..|.| || .
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p-----~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~I 88 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGP-----QQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNI 88 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSST-----TB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCC-----CccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCC
Confidence 4578999999999999999999999999864 7899865 8999999999999988876 44 3
Q ss_pred CCchhhhh------------hCC--------CCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcch
Q 008982 156 SLPAWAGE------------YGG--------WKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 202 (547)
Q Consensus 156 DlP~wL~~------------~GG--------W~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~ 202 (547)
-||.|+.+ .|. |+...+++.+.+|-+-..++|.+.. -||-|..+
T Consensus 89 pLP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~v 152 (402)
T PF01373_consen 89 PLPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQV 152 (402)
T ss_dssp -S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEEE
T ss_pred cCCHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEEe
Confidence 58999731 233 5555559999999999999998765 56666543
No 37
>PLN03059 beta-galactosidase; Provisional
Probab=94.95 E-value=0.16 Score=59.51 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=78.6
Q ss_pred CChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec--------CCCCc
Q 008982 87 SDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF--------HHSLP 158 (547)
Q Consensus 87 ~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~--------HwDlP 158 (547)
..|++=|+.||++|+|++-.=|.|.-.+|.+ |.+|++|..=-.++|+.+.+.|+-.|+-.= .-.+|
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~------G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP 132 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP------GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFP 132 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC------CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCc
Confidence 3578889999999999999999999999985 899999988888999999999998887542 34699
Q ss_pred hhhhhhCCCCChhhHHHHHHHHHHHHHHhCCcc---eeEEEecCcch
Q 008982 159 AWAGEYGGWKLEKTIDYFMDFTRLVVDSVSDIV---DYWVTFNEPHV 202 (547)
Q Consensus 159 ~wL~~~GGW~n~~~v~~F~~YA~~vf~~fGDrV---k~WiT~NEP~~ 202 (547)
.||.+..|-.-+..-..|.+.++.-+++...++ ++..+=.=|-+
T Consensus 133 ~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPII 179 (840)
T PLN03059 133 VWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPII 179 (840)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEE
Confidence 999754453333333445544444444444444 34444333433
No 38
>PLN02801 beta-amylase
Probab=94.43 E-value=0.2 Score=55.34 Aligned_cols=105 Identities=19% Similarity=0.451 Sum_probs=78.8
Q ss_pred hHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec-C-----------CC
Q 008982 89 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF-H-----------HS 156 (547)
Q Consensus 89 ~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~-H-----------wD 156 (547)
.+..|+.||.+||+.+-+.+=|--++.++| +.+|+++ |++|++.+++.|++..+.|- | .-
T Consensus 39 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P-----~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 110 (517)
T PLN02801 39 LEKQLKRLKEAGVDGVMVDVWWGIVESKGP-----KQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIP 110 (517)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCC-----CccCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 468999999999999999999999999864 7899865 89999999999999776664 3 24
Q ss_pred Cchhhhh------------hCCCC----------------ChhhHHHHHHHHHHHHHHhCCcceeEEEecCcch
Q 008982 157 LPAWAGE------------YGGWK----------------LEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 202 (547)
Q Consensus 157 lP~wL~~------------~GGW~----------------n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~ 202 (547)
||+|+.+ .-|-. .+.-++.+.+|-+-.-++|.+...- -||.|..+
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~-~~I~eI~V 183 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEA-GVIIDIEV 183 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CeeEEEEE
Confidence 9999742 12322 2234688999999888888875421 25555443
No 39
>PLN02705 beta-amylase
Probab=94.17 E-value=0.18 Score=56.73 Aligned_cols=105 Identities=21% Similarity=0.352 Sum_probs=77.2
Q ss_pred hHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec-C-----------CC
Q 008982 89 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF-H-----------HS 156 (547)
Q Consensus 89 ~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~-H-----------wD 156 (547)
.+..|+.||.+||+.+-+.+=|--|+.++| +.+|+++ |++|++.+++.|++..+.|- | --
T Consensus 270 l~a~L~aLK~aGVdGVmvDVWWGiVE~~~P-----~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IP 341 (681)
T PLN02705 270 VRQELSHMKSLNVDGVVVDCWWGIVEGWNP-----QKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGGNASGNVMIS 341 (681)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeEeecCCC-----CcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCCCCCCccccc
Confidence 468899999999999999999999999864 7899865 89999999999999777664 3 24
Q ss_pred Cchhhhhh------------CCCCC----------------hhhHHHHHHHHHHHHHHhCCcceeEEEecCcch
Q 008982 157 LPAWAGEY------------GGWKL----------------EKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 202 (547)
Q Consensus 157 lP~wL~~~------------GGW~n----------------~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~ 202 (547)
||+|+.+. -|-.| +.-++.+.+|.+-.-++|.+...- -||.|..|
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~V 414 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVE-GLITAVEI 414 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CceeEEEe
Confidence 99997431 22222 233478888888877888764311 15555443
No 40
>PLN02905 beta-amylase
Probab=94.14 E-value=0.19 Score=56.63 Aligned_cols=110 Identities=18% Similarity=0.338 Sum_probs=80.1
Q ss_pred CCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCC--------
Q 008982 84 RFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHH-------- 155 (547)
Q Consensus 84 ~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~Hw-------- 155 (547)
..+.-.+..|..||.+||+.+-+.+=|--+++++| +.+|+++ |++|++.+++.|++..+.|--+
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP-----~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGGNVGD 354 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAP-----QEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGGNVGD 354 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCC-----CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCC
Confidence 44445678999999999999999999999999874 7899865 8999999999999987776433
Q ss_pred ----CCchhhhh------------hCCCCC----------------hhhHHHHHHHHHHHHHHhCCcceeEEEecCcch
Q 008982 156 ----SLPAWAGE------------YGGWKL----------------EKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 202 (547)
Q Consensus 156 ----DlP~wL~~------------~GGW~n----------------~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~ 202 (547)
-||+|+.+ .-|-.| +.-++.+.+|.+-.-++|.+...- -||.|..+
T Consensus 355 ~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~V 432 (702)
T PLN02905 355 DVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFED-GVISMVEV 432 (702)
T ss_pred cccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Confidence 49999742 123222 334577888888877887764311 14555443
No 41
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=94.14 E-value=0.39 Score=49.84 Aligned_cols=107 Identities=18% Similarity=0.285 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCeEEecc--ccccc-----CCCCCCCCC------cCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCC
Q 008982 90 DIELKLAKDTGVSVFRLGI--DWSRI-----MPAEPVNGL------KETVNFAALERYKWIINRVRSYGMKVMLTLFHHS 156 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI--~WsRI-----~P~~~~~G~------~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwD 156 (547)
+.=|+..++-|+|.+|+.+ .|... .|..+..+. -..+|++=.++-+++|+.|.++||.|.+-++| +
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 4557889999999999998 44433 222221111 12489999999999999999999999987776 2
Q ss_pred CchhhhhhCCCCC---hhhHHHHHHHHHHHHHHhCCc-ceeEEEecCc
Q 008982 157 LPAWAGEYGGWKL---EKTIDYFMDFTRLVVDSVSDI-VDYWVTFNEP 200 (547)
Q Consensus 157 lP~wL~~~GGW~n---~~~v~~F~~YA~~vf~~fGDr-Vk~WiT~NEP 200 (547)
.|. ..|.|-. .-..+.-.+|.+.|++||+.. =-.|+.=||-
T Consensus 112 ~~~---~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CPY---VPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---H-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Ccc---ccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 221 1244432 234677788999999999987 3668887774
No 42
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=92.45 E-value=7.9 Score=43.44 Aligned_cols=112 Identities=19% Similarity=0.313 Sum_probs=63.5
Q ss_pred CCcceEEeecCCCceecCCCCcccCCCCCCCCCCccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCCC-Cc----cchH
Q 008982 299 DRLDFIGINYYGQEVVSGPGLKLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDE-TD----LIRR 373 (547)
Q Consensus 299 ~~~DFiGiNyYt~~~v~~~~~~~~~~~~~s~~g~~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~~-~D----~~Ri 373 (547)
..+|-+|+|.|... ..+ ..|..++++|+ ++.|+-||...+.. .| ....
T Consensus 301 ~yv~GiA~HwY~g~---------------------~~~----~~l~~~h~~~P--~k~l~~TE~~~g~~~~~~~~~~g~w 353 (496)
T PF02055_consen 301 KYVDGIAFHWYGGD---------------------PSP----QALDQVHNKFP--DKFLLFTEACCGSWNWDTSVDLGSW 353 (496)
T ss_dssp TTEEEEEEEETTCS----------------------HC----HHHHHHHHHST--TSEEEEEEEESS-STTS-SS-TTHH
T ss_pred hheeEEEEECCCCC---------------------chh----hHHHHHHHHCC--CcEEEeeccccCCCCcccccccccH
Confidence 45799999999531 011 35678899998 68899999876542 12 1111
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEeecc-cc---cCCcCCCCCccceEEEcCCCCccccccchHHHHHHHHH
Q 008982 374 PYVIEHLLAVYAAMITGVPVIGYLFWTIS-DN---WEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVT 442 (547)
Q Consensus 374 ~yl~~hL~~v~~Ai~dGV~V~GY~~WSLl-Dn---fEW~~Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~ 442 (547)
.--..+...+...+..| +.|++.|.|+ |. .-|..++... .+-||.++ .+-+..+.++.++++.+
T Consensus 354 ~~~~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~~n~~d~--~iivd~~~-~~~~~~p~yY~~gHfSK 421 (496)
T PF02055_consen 354 DRAERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWVGNFCDA--PIIVDSDT-GEFYKQPEYYAMGHFSK 421 (496)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT---B----SEEEEGGG-TEEEE-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCcccCCCCCc--eeEEEcCC-CeEEEcHHHHHHHHHhc
Confidence 11123344455667777 7899999984 42 3354444333 34477643 23455566777776653
No 43
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=92.24 E-value=1.6 Score=47.35 Aligned_cols=263 Identities=18% Similarity=0.196 Sum_probs=142.3
Q ss_pred HHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEE-EecCCCCchhhhh-hCC-CCC-hh
Q 008982 96 AKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVML-TLFHHSLPAWAGE-YGG-WKL-EK 171 (547)
Q Consensus 96 ~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiV-TL~HwDlP~wL~~-~GG-W~n-~~ 171 (547)
-+++||+..|+---|.-++-.- -++ ..++++++|.+.+.| .|+| +-+||+.+.-... +-+ =.. ..
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~~-------~~~---~t~~d~i~d~~~~~~-~~~ie~~l~~~~l~~~~~~wq~n~~~~~~ 82 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQKL-------FYP---FTYIDEIIDTLLDLG-LDLIELFLIWNNLNTKEHQWQLNVDDPKS 82 (428)
T ss_pred hhhhceeeehhcceeeeeeccc-------cCC---hHHHHHHHHHHHHhc-cHHHHHhhcccchhhhhhhcccccCCcHh
Confidence 3588999998888888222221 123 368899999999999 5555 6678887765433 211 112 24
Q ss_pred hHHHHHHHHHHHHHHhCCc---ceeEEEecCcchhhhccccCCcCCCCCCchhhhhhccCCchhHHHHHHHHHHHHHHHH
Q 008982 172 TIDYFMDFTRLVVDSVSDI---VDYWVTFNEPHVFCMLTYCAGTWPGGNPDMLEVATSALPTGVFNQAMHWMAIAHSKAY 248 (547)
Q Consensus 172 ~v~~F~~YA~~vf~~fGDr---Vk~WiT~NEP~~~~~~gY~~G~~pPg~~~~~~~~~~~~~~~~~~~a~h~ll~AHa~A~ 248 (547)
..+.+..|+..|+.++|-+ +-....+||||..+- .. +.+ . +-+..||
T Consensus 83 ~~dl~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ad--------------~~---------eyf-k--~y~~~a~---- 132 (428)
T COG3664 83 VFDLIAAFLKHVIRRVGVEFVRKWPFYSPNEPNLLAD--------------KQ---------EYF-K--LYDATAR---- 132 (428)
T ss_pred HHHHHHHHHHHHHHHhChhheeecceeecCCCCcccc--------------hH---------HHH-H--HHHhhhh----
Confidence 7899999999999999953 334567888886421 10 111 1 2233333
Q ss_pred HHHhhcCCCCCCeEEEEeeccccCCCCcccHHHHHHHhhccCCCccccCCCCcceEEeecCCCceecCCCCcccCCCCCC
Q 008982 249 DYIHAKSTSTKSKVGVAHHVSFMRPYGLFDVTAVTLANTLTTFPYVDSISDRLDFIGINYYGQEVVSGPGLKLVETDEYS 328 (547)
Q Consensus 249 ~~ir~~~~~~~~~VGi~~~~~~~~P~~~~D~~aa~~~~~l~~~p~~d~i~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~s 328 (547)
+..+ .-.||- +|..+ ++ .++.+ .....||+-.+-|+..-+.... ....+..
T Consensus 133 ----~~~p--~i~vg~----~w~~e-------------~l--~~~~k-~~d~idfvt~~a~~~~av~~~~---~~~~~~~ 183 (428)
T COG3664 133 ----QRAP--SIQVGG----SWNTE-------------RL--HEFLK-KADEIDFVTELANSVDAVDFST---PGAEEVK 183 (428)
T ss_pred ----ccCc--ceeecc----ccCcH-------------HH--hhhhh-ccCcccceeecccccccccccC---CCchhhh
Confidence 1111 112322 12211 00 01112 3567899988888765332100 0001111
Q ss_pred CCCC-ccCchHHHHHHHHHHHHhCCCCCcEEEeecCCCCC-----C-ccchHHHHHHHHHHHHHHHHcCCCeEEEEEeec
Q 008982 329 ESGR-GVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDE-----T-DLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTI 401 (547)
Q Consensus 329 ~~g~-~i~P~GL~~~L~~i~~rY~~~~~PI~ITENG~~~~-----~-D~~Ri~yl~~hL~~v~~Ai~dGV~V~GY~~WSL 401 (547)
.++. .+.++ ++ -++..-+.++- ++|.++||=-..+. + +-.|..||.+-| .+.|.+|.+..+|.-
T Consensus 184 l~~~~~~l~~-~r-~~~d~i~~~~~-~~pl~~~~wntlt~~~~~~n~sy~raa~i~~~L------r~~g~~v~a~~yW~~ 254 (428)
T COG3664 184 LSELKRTLED-LR-GLKDLIQHHSL-GLPLLLTNWNTLTGPREPTNGSYVRAAYIMRLL------REAGSPVDAFGYWTN 254 (428)
T ss_pred hhhhhhhhhH-HH-HHHHHHHhccC-CCcceeecccccCCCccccCceeehHHHHHHHH------HhcCChhhhhhhhhc
Confidence 1111 11222 11 22222234443 67999999766542 2 234555554433 357999999999999
Q ss_pred ccccCCcC----CCCCccceEEEcCCCCccccccchHHHHHHH
Q 008982 402 SDNWEWAD----GYGPKFGLVAVDRANNLARIPRPSYHLFTKV 440 (547)
Q Consensus 402 lDnfEW~~----Gy~~rFGL~~VD~~~~~~R~pK~Sa~~y~~i 440 (547)
.|-+|=.. ++-.-|||++ ++. .+|--=-++..|.++
T Consensus 255 sdl~e~~g~~~~~~~~gfel~~-~~~--~rrpa~~~~l~~n~L 294 (428)
T COG3664 255 SDLHEEHGPPEAPFVGGFELFA-PYG--GRRPAWMAALFFNRL 294 (428)
T ss_pred ccccccCCCcccccccceeeec-ccc--cchhHHHHHHHHHHH
Confidence 99987543 3556678874 332 222222445555555
No 44
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=89.44 E-value=1.9 Score=50.88 Aligned_cols=125 Identities=17% Similarity=0.122 Sum_probs=86.5
Q ss_pred hhhcceecccccccCCCCCCCCccccccccccceeccCCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCC
Q 008982 40 GFQKYIEVDEGEEVSGENEVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPV 119 (547)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~ 119 (547)
||..+.=..++=.|||. | .|+|-+++-.+ ..--..+-....+.+|+++||++|+|++|.| -.|..
T Consensus 282 GfR~iei~~~~~~iNGk---p----vf~kGvnrHe~-~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-- 346 (808)
T COG3250 282 GFRTVEIKDGLLLINGK---P----VFIRGVNRHED-DPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-- 346 (808)
T ss_pred ccEEEEEECCeEEECCe---E----EEEeeeecccC-CCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC--
Confidence 77777777778888884 3 77776654433 3333344455558999999999999999998 66753
Q ss_pred CCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCChhhHHHHHHHHHHHHHHhCCc--ceeEEEe
Q 008982 120 NGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVDSVSDI--VDYWVTF 197 (547)
Q Consensus 120 ~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n~~~v~~F~~YA~~vf~~fGDr--Vk~WiT~ 197 (547)
.+..+-|=+.||=+|=-..+. -.|+..+++..+...+=++.++++-... |-.|+.=
T Consensus 347 ---------------~~~ydLcDelGllV~~Ea~~~-------~~~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~g 404 (808)
T COG3250 347 ---------------EEFYDLCDELGLLVIDEAMIE-------THGMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLG 404 (808)
T ss_pred ---------------HHHHHHHHHhCcEEEEecchh-------hcCCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecc
Confidence 245666777898877544432 1234455666677777788888887764 7788888
Q ss_pred cCcc
Q 008982 198 NEPH 201 (547)
Q Consensus 198 NEP~ 201 (547)
||..
T Consensus 405 NE~~ 408 (808)
T COG3250 405 NESG 408 (808)
T ss_pred cccc
Confidence 8854
No 45
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=88.69 E-value=0.59 Score=49.13 Aligned_cols=89 Identities=18% Similarity=0.312 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeecCCCCCCccc-hHHHHHHHHHHHHHHHHcCCCe-----EEEEEeecccccCCcCC--
Q 008982 339 LFRVLHQFHERYKHLNLPFIITENGVSDETDLI-RRPYVIEHLLAVYAAMITGVPV-----IGYLFWTISDNWEWADG-- 410 (547)
Q Consensus 339 L~~~L~~i~~rY~~~~~PI~ITENG~~~~~D~~-Ri~yl~~hL~~v~~Ai~dGV~V-----~GY~~WSLlDnfEW~~G-- 410 (547)
+.+.+....++-+..++||+|||+||++..+.. -..==+.+...+.+.+..|.+. .-+++.+++|- .|-.|
T Consensus 212 ~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE-~~K~~~~ 290 (310)
T PF00332_consen 212 MVDAVYAAMEKLGFPNVPVVVGETGWPSAGDPGATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDE-NWKPGPE 290 (310)
T ss_dssp HHHHHHHHHHTTT-TT--EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB---TTSSSSG
T ss_pred HHHHHHHHHHHhCCCCceeEEeccccccCCCCCCCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecC-cCCCCCc
Confidence 345555555665555789999999999765511 1111233334444444466554 34777888775 45554
Q ss_pred CCCccceEEEcCCCCccccccchH
Q 008982 411 YGPKFGLVAVDRANNLARIPRPSY 434 (547)
Q Consensus 411 y~~rFGL~~VD~~~~~~R~pK~Sa 434 (547)
.+..|||++-| |+||-+.
T Consensus 291 ~E~~wGlf~~d------~~~ky~~ 308 (310)
T PF00332_consen 291 VERHWGLFYPD------GTPKYDL 308 (310)
T ss_dssp GGGG--SB-TT------SSBSS--
T ss_pred ccceeeeECCC------CCeecCC
Confidence 57899999776 4666543
No 46
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=85.81 E-value=8.1 Score=36.95 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=60.7
Q ss_pred ChHHHHHHHHhcCCCeEEecccccccCCCC--CCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhC
Q 008982 88 DPDIELKLAKDTGVSVFRLGIDWSRIMPAE--PVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYG 165 (547)
Q Consensus 88 ~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~--~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~G 165 (547)
+|+++++.|+++|++.+=+- |+..--.. |.....+.+.....+-...+++++-++||+.+|.|+.. |.|.+.
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~--~~~w~~-- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD--PDYWDQ-- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC--chhhhc--
Confidence 68899999999999998533 54432210 00000112233445667889999999999999999964 455442
Q ss_pred CCCChh-hHHHHHHHHHHHHHHhCCc--ceeEEEecCc
Q 008982 166 GWKLEK-TIDYFMDFTRLVVDSVSDI--VDYWVTFNEP 200 (547)
Q Consensus 166 GW~n~~-~v~~F~~YA~~vf~~fGDr--Vk~WiT~NEP 200 (547)
.+.+ -++.=..-++.++++||.. +.-|-.=+|+
T Consensus 95 --~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~ 130 (166)
T PF14488_consen 95 --GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEI 130 (166)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEeccc
Confidence 1111 1222223455566677753 3334444443
No 47
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=83.13 E-value=2.2 Score=36.12 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=13.6
Q ss_pred HHHHhCC--cceeEEEecC-cc
Q 008982 183 VVDSVSD--IVDYWVTFNE-PH 201 (547)
Q Consensus 183 vf~~fGD--rVk~WiT~NE-P~ 201 (547)
++++||+ +|.+|-.+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 3566765 7999999999 76
No 48
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=78.81 E-value=6.2 Score=40.73 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=43.3
Q ss_pred cCCCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 008982 76 VPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF 153 (547)
Q Consensus 76 ~~~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~ 153 (547)
..+.+.+|..=+.+..|+++|+.-+. ..|. .| .|...+ .++.-.+-+.|++.++.++
T Consensus 52 ~~n~dGtCKSa~~~~sDLe~l~~~t~-~IR~----------------Y~-sDCn~l---e~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 52 PYNDDGTCKSADQVASDLELLASYTH-SIRT----------------YG-SDCNTL---ENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred ccCCCCCCcCHHHHHhHHHHhccCCc-eEEE----------------ee-ccchhh---hhhHHHHHhcCceEEEEEe
Confidence 44577899999999999999998776 4553 12 344444 4688889999999998885
No 49
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=78.54 E-value=0.74 Score=51.31 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=70.9
Q ss_pred eEEEEEeecccccCCcCC-CCCccceEEEcCCCCccccccchHHHHHHHHHcCCCCchhhh-hhHHHHHHHHHhccCCCc
Q 008982 393 VIGYLFWTISDNWEWADG-YGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKVTREDRA-RAWSELQLAAKQKKTRPF 470 (547)
Q Consensus 393 V~GY~~WSLlDnfEW~~G-y~~rFGL~~VD~~~~~~R~pK~Sa~~y~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ 470 (547)
-.=+.-|.|-+.++|... |.....+|..|.-.+..+.-+.......+ ..|. =.+.-|+...++.+.
T Consensus 386 ~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D---------~~Ri~Y~~~~L~~~~kAi~~--- 453 (524)
T KOG0626|consen 386 WLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKD---------TKRIEYLQNHLQAVLKAIKE--- 453 (524)
T ss_pred ceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcc---------hHHHHHHHHHHHHHHHHHHh---
Confidence 344568999999999887 88888888877533322221111111111 1111 122234444433332
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCccceeeeecCCCCccchhhhhhcc
Q 008982 471 YRAVNKHGLMYAGGLDEPTQRPYIQRDWRFGHYQMEGLQDPLSRLSRCILR 521 (547)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 521 (547)
..||=.|-++.-.+|-..+.+-. ++|||.|.|+ ++||+.|..+.-..
T Consensus 454 -dgvnv~GYf~WSLmDnfEw~~Gy--~~RFGlyyVD-f~d~l~R~pK~Sa~ 500 (524)
T KOG0626|consen 454 -DGVNVKGYFVWSLLDNFEWLDGY--KVRFGLYYVD-FKDPLKRYPKLSAK 500 (524)
T ss_pred -cCCceeeEEEeEcccchhhhcCc--ccccccEEEe-CCCCCcCCchhHHH
Confidence 34677888888899988877744 4999999999 99999887776544
No 50
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=76.74 E-value=11 Score=43.19 Aligned_cols=94 Identities=20% Similarity=0.217 Sum_probs=72.1
Q ss_pred ChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEe--------cCCCCch
Q 008982 88 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL--------FHHSLPA 159 (547)
Q Consensus 88 ~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL--------~HwDlP~ 159 (547)
.|++=++.+|++|+|+.-.=+.|.-.+|.+ |..|.+|.-=--.+|..+.++|+-.++-+ .|=.+|.
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~------g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~ 123 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP------GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPW 123 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC------CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcch
Confidence 567889999999999999999999999985 78899986555567888888887655432 3556898
Q ss_pred hhhhhCCCC----ChhhHHHHHHHHHHHHHHh
Q 008982 160 WAGEYGGWK----LEKTIDYFMDFTRLVVDSV 187 (547)
Q Consensus 160 wL~~~GGW~----n~~~v~~F~~YA~~vf~~f 187 (547)
||...-|-. |+-+-.++.+|.+.++...
T Consensus 124 wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~m 155 (649)
T KOG0496|consen 124 WLRNVPGIVFRTDNEPFKAEMERWTTKIVPMM 155 (649)
T ss_pred hhhhCCceEEecCChHHHHHHHHHHHHHHHHH
Confidence 886653322 5667788888888887643
No 51
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=72.67 E-value=29 Score=36.61 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHhcCCCeEEec---ccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhh
Q 008982 86 WSDPDIELKLAKDTGVSVFRLG---IDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAG 162 (547)
Q Consensus 86 ~~~~~eDl~l~k~lG~~~yRfs---I~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~ 162 (547)
..||.+--++++.+|+|..-+. ..-..+.| +-++-+.++-+-++.+||++++++. |..|..+.
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~-------------~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~lg 121 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTP-------------EYLDKVARLADVFRPYGIKVYLSVN-FASPIELG 121 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGST-------------TTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHTT
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCH-------------HHHHHHHHHHHHHhhcCCEEEEEee-ccCCcccC
Confidence 3578888899999999997653 22233333 2356667899999999999999997 77887652
Q ss_pred h--hCCCCChhhHHHHHHHHHHHHHHhCC
Q 008982 163 E--YGGWKLEKTIDYFMDFTRLVVDSVSD 189 (547)
Q Consensus 163 ~--~GGW~n~~~v~~F~~YA~~vf~~fGD 189 (547)
. .-.-+++++..++.+=++.+.+.+.|
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 1 12246899999999999999999887
No 52
>smart00642 Aamy Alpha-amylase domain.
Probab=69.38 E-value=11 Score=35.77 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=44.2
Q ss_pred CCCCChHHHHHHHHhcCCCeEEecccccccCC--CCCCCCC----cCcCCH--HHHHHHHHHHHHHHHcCCeEEEEec
Q 008982 84 RFWSDPDIELKLAKDTGVSVFRLGIDWSRIMP--AEPVNGL----KETVNF--AALERYKWIINRVRSYGMKVMLTLF 153 (547)
Q Consensus 84 ~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P--~~~~~G~----~g~vN~--~gl~~Y~~lId~L~~~GI~PiVTL~ 153 (547)
.-|....+-+.-++++|++++-++--+..... .. .|- .-.+|+ -..+=.++||++|.++||++|+.+.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~--~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSY--HGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCC--CCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34555677888999999999998776554431 00 000 001111 1234468999999999999998764
No 53
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=55.42 E-value=3e+02 Score=30.84 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCeEEe-------------------------cccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHc
Q 008982 90 DIELKLAKDTGVSVFRL-------------------------GIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSY 144 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRf-------------------------sI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~ 144 (547)
++=++++|+|.+...|+ .+.|--.++ |+=|. +++++.|...
T Consensus 52 kDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~Et-----------N~~Gt---~EF~~~~e~i 117 (501)
T COG3534 52 KDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTET-----------NEFGT---HEFMDWCELI 117 (501)
T ss_pred HHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccc-----------ccccH---HHHHHHHHHh
Confidence 45568999999999985 334433322 22233 6899999999
Q ss_pred CCeEEEEecCCCCchhhhhhCCCCChhhHHHHHHHHHHH--------HHHhCC----cceeEEEecCc
Q 008982 145 GMKVMLTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLV--------VDSVSD----IVDYWVTFNEP 200 (547)
Q Consensus 145 GI~PiVTL~HwDlP~wL~~~GGW~n~~~v~~F~~YA~~v--------f~~fGD----rVk~WiT~NEP 200 (547)
|.+|++.+.= |. ..-+.+..|.+||..= =...|- .||||+.=||-
T Consensus 118 Gaep~~avN~----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 118 GAEPYIAVNL----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred CCceEEEEec----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 9999998862 11 2234455666665321 123332 49999999994
No 54
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=51.55 E-value=1e+02 Score=36.62 Aligned_cols=100 Identities=19% Similarity=0.281 Sum_probs=63.1
Q ss_pred cCCCeEEeccc-ccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCC---CCchh--hhh---------
Q 008982 99 TGVSVFRLGID-WSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHH---SLPAW--AGE--------- 163 (547)
Q Consensus 99 lG~~~yRfsI~-WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~Hw---DlP~w--L~~--------- 163 (547)
+=++++++++. |.+ .-. .=++|..-.--=+.||++|.+.||+-++-+... |.|+. +.+
T Consensus 294 IP~d~~~lD~~~~~~--~~~-----~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~ 366 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWG-----DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPD 366 (772)
T ss_pred CcceEEEEeehhhhc--ccc-----ceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCC
Confidence 56889999995 875 110 001222211112479999999999999887643 34432 110
Q ss_pred -----------hC---CCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhc
Q 008982 164 -----------YG---GWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCML 206 (547)
Q Consensus 164 -----------~G---GW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~ 206 (547)
.+ -|+||+..++|.+....-+..+| -.-+|.=+|||.++...
T Consensus 367 g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 367 GEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred CCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 01 27799999999973333344455 35789999999988765
No 55
>PLN02361 alpha-amylase
Probab=49.35 E-value=33 Score=37.47 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=46.5
Q ss_pred CCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCH--HHHHHHHHHHHHHHHcCCeEEEEe--cC
Q 008982 84 RFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNF--AALERYKWIINRVRSYGMKVMLTL--FH 154 (547)
Q Consensus 84 ~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~--~gl~~Y~~lId~L~~~GI~PiVTL--~H 154 (547)
.+|....+.++-|++||+++.=++-...-.-+.|--...--.+|. -..+=+++||++|.++||++|+.+ .|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 477888899999999999999887655443332200000001111 012346899999999999999974 45
No 56
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=46.32 E-value=1.2e+02 Score=31.72 Aligned_cols=110 Identities=19% Similarity=0.242 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCC-eEEecc-ccc-ccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCC
Q 008982 90 DIELKLAKDTGVS-VFRLGI-DWS-RIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGG 166 (547)
Q Consensus 90 ~eDl~l~k~lG~~-~yRfsI-~Ws-RI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GG 166 (547)
++.+++|+++|++ .+-+++ +-+ +++-.. . .+| . ..+-+.+.++.++++||.+.+.|. +.+|.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~-i--nKg-~---t~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~------- 181 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKS-I--NKG-S---TFEDFIRAAELARKYGAGVKAYLL-FKPPF------- 181 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHh-h--CCC-C---CHHHHHHHHHHHHHcCCcEEEEEE-ecCCC-------
Confidence 8999999999987 455555 211 111000 0 011 1 234567899999999999776665 45562
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhccccCCcCCC
Q 008982 167 WKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTWPG 215 (547)
Q Consensus 167 W~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~gY~~G~~pP 215 (547)
..-.+.++.+.+.++.+.+ +++.|....+.=+|......-|..|.+.|
T Consensus 182 ~se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 182 LSEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred CChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 1223677888888887765 45788877766566654333455566643
No 57
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=45.74 E-value=84 Score=31.29 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 169 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n 169 (547)
+++++.+++.|++.+|++++-+-+.-.-. .+.=.+..++-..+.|+.+++.|++..+.+....-|
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~----~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----------- 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKN----LNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC----------- 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-----------
Confidence 88999999999999999998773211100 001112245666789999999999999999664433
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 008982 170 EKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 170 ~~~v~~F~~YA~~vf~~fG 188 (547)
....+.+.++++.+. .+|
T Consensus 142 ~~~~~~l~~~~~~~~-~~g 159 (265)
T cd03174 142 KTDPEYVLEVAKALE-EAG 159 (265)
T ss_pred CCCHHHHHHHHHHHH-HcC
Confidence 245566777777765 345
No 58
>PLN00196 alpha-amylase; Provisional
Probab=45.32 E-value=30 Score=38.13 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=45.9
Q ss_pred CCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCH---HHHHHHHHHHHHHHHcCCeEEEE--ecCC
Q 008982 85 FWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNF---AALERYKWIINRVRSYGMKVMLT--LFHH 155 (547)
Q Consensus 85 ~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~---~gl~~Y~~lId~L~~~GI~PiVT--L~Hw 155 (547)
+|....+.+.-|++|||++.=++-.....-+.|--....-.+|. -..+=+++||++|.++||++|+. +.|-
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 45556789999999999999988755443222200000011221 11234689999999999999997 4564
No 59
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=45.10 E-value=55 Score=33.89 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=63.7
Q ss_pred ChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCC
Q 008982 88 DPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGW 167 (547)
Q Consensus 88 ~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW 167 (547)
+-+.|++++++.|++..++.++=|...-... .+.--.+.++-..++|..++++|+++.+++-+|.-|.
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~----~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-------- 142 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQ----LRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-------- 142 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHH----HCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC--------
Confidence 3467999999999999999997665544320 1223367788899999999999999999999876663
Q ss_pred CChhhHHHHHHHHHHHHHHhC
Q 008982 168 KLEKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 168 ~n~~~v~~F~~YA~~vf~~fG 188 (547)
+...+.+.++++.+.+ .|
T Consensus 143 --r~~~~~~~~~~~~~~~-~G 160 (280)
T cd07945 143 --RDSPDYVFQLVDFLSD-LP 160 (280)
T ss_pred --cCCHHHHHHHHHHHHH-cC
Confidence 1234677888887654 45
No 60
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=44.42 E-value=99 Score=33.13 Aligned_cols=88 Identities=9% Similarity=0.095 Sum_probs=57.1
Q ss_pred HHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCChh
Q 008982 92 ELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLEK 171 (547)
Q Consensus 92 Dl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n~~ 171 (547)
.++.++++|.+++-+-+-|. |+. ...+|..-+++-.++.++|.++||.-++-+.=++.+....+..-+ .+.
T Consensus 111 sve~a~~~GAdAVk~lv~~~---~d~-----~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~-a~~ 181 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYR---PDE-----DDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEF-AKV 181 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeC---CCc-----chHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccc-ccc
Confidence 36779999999999999987 542 134688889999999999999999988864333322211110001 012
Q ss_pred hHHHHHHHHHHHHH-HhC
Q 008982 172 TIDYFMDFTRLVVD-SVS 188 (547)
Q Consensus 172 ~v~~F~~YA~~vf~-~fG 188 (547)
-.+....-++.+.+ +||
T Consensus 182 ~p~~V~~a~r~~~~~elG 199 (340)
T PRK12858 182 KPEKVIKTMEEFSKPRYG 199 (340)
T ss_pred CHHHHHHHHHHHhhhccC
Confidence 34455555555554 687
No 61
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=43.41 E-value=1.4e+02 Score=31.93 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=50.5
Q ss_pred HHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCch
Q 008982 92 ELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPA 159 (547)
Q Consensus 92 Dl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~ 159 (547)
.++.+|++|.++..|=+=|. |++ ...+|..-.+|-+++.++|.++||-=++-+.-+|.+.
T Consensus 110 S~~rike~GadavK~Llyy~---pD~-----~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~ 169 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLYYD---VDE-----PDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKI 169 (324)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCC-----CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcc
Confidence 47899999999999988886 543 2469999999999999999999999888887766543
No 62
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=43.26 E-value=3.2e+02 Score=29.68 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=48.3
Q ss_pred ccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEE-EEecCCCCchh
Q 008982 82 RLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVM-LTLFHHSLPAW 160 (547)
Q Consensus 82 ~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~Pi-VTL~HwDlP~w 160 (547)
++.-.-...+-++.++++|++.+=| ....+.|-+ ....+--....++-+.|.++||++. ||..-|..|.+
T Consensus 27 ~~~~~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~-------~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~ 97 (382)
T TIGR02631 27 ATRTALDPVEAVHKLAELGAYGVTF--HDDDLIPFG-------APPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVF 97 (382)
T ss_pred CCCCCcCHHHHHHHHHHhCCCEEEe--cccccCCCC-------CChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccc
Confidence 4456678899999999999998854 334456642 1111111235677788999999954 45432222323
Q ss_pred hhhhCCCCChh
Q 008982 161 AGEYGGWKLEK 171 (547)
Q Consensus 161 L~~~GGW~n~~ 171 (547)
..||+.+++
T Consensus 98 --~~g~las~d 106 (382)
T TIGR02631 98 --KDGGFTSND 106 (382)
T ss_pred --cCCCCCCCC
Confidence 336777753
No 63
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=41.95 E-value=52 Score=36.75 Aligned_cols=73 Identities=16% Similarity=0.358 Sum_probs=56.2
Q ss_pred CCChHHH-----HHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchh
Q 008982 86 WSDPDIE-----LKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAW 160 (547)
Q Consensus 86 ~~~~~eD-----l~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~w 160 (547)
|.+|.+| ++++++-|++.+|..-.... ++--...|+.+++.|....+++.|=+.|
T Consensus 99 y~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd------------------~~n~~~ai~~ak~~G~~~~~~i~yt~sp-- 158 (468)
T PRK12581 99 YRHYADDIVDKFISLSAQNGIDVFRIFDALND------------------PRNIQQALRAVKKTGKEAQLCIAYTTSP-- 158 (468)
T ss_pred ccCCcchHHHHHHHHHHHCCCCEEEEcccCCC------------------HHHHHHHHHHHHHcCCEEEEEEEEEeCC--
Confidence 5567778 99999999999998764321 1223578999999999999999987666
Q ss_pred hhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 008982 161 AGEYGGWKLEKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 161 L~~~GGW~n~~~v~~F~~YA~~vf~~fG 188 (547)
..+.+++.+.|+.+.+ .|
T Consensus 159 ---------~~t~~y~~~~a~~l~~-~G 176 (468)
T PRK12581 159 ---------VHTLNYYLSLVKELVE-MG 176 (468)
T ss_pred ---------cCcHHHHHHHHHHHHH-cC
Confidence 3377889999998764 45
No 64
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=41.26 E-value=44 Score=34.27 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF 153 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~ 153 (547)
.+|++.+.+.|++.+|+.++=|...-... .+.=-.+.++...++|..++++|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~----~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREAS----HGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 67999999999999999987665433210 1111256788899999999999999999885
No 65
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.00 E-value=1.6e+02 Score=30.67 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCC--CeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCc---hh----
Q 008982 90 DIELKLAKDTGV--SVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLP---AW---- 160 (547)
Q Consensus 90 ~eDl~l~k~lG~--~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP---~w---- 160 (547)
.+-++.+++.|+ +++=+.+.|..-.-. =++|.+-..--..+|++|.++|+++++.+.=+-.+ ..
T Consensus 33 ~~~~~~~~~~~iP~d~i~iD~~w~~~~g~-------f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~ 105 (303)
T cd06592 33 LNYAQEIIDNGFPNGQIEIDDNWETCYGD-------FDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAV 105 (303)
T ss_pred HHHHHHHHHcCCCCCeEEeCCCccccCCc-------cccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhh
Confidence 456677888885 577777778543211 13443332334689999999999999876643222 11
Q ss_pred -----hhh-hC-------------C---CCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcc
Q 008982 161 -----AGE-YG-------------G---WKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPH 201 (547)
Q Consensus 161 -----L~~-~G-------------G---W~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~ 201 (547)
+.+ .| + +.||+..++|.+..+.++...|= --+|+=+|||.
T Consensus 106 ~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 106 EKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred hCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 101 11 1 67899999999999998878873 35688899996
No 66
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=40.80 E-value=76 Score=32.16 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 169 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n 169 (547)
.+|++.+.+.|++.+|+.++.|.+.-... -+.=-++.++-..++++.++++|+++.+++-. .+
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~----~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~----------~~--- 134 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHK----LGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED----------AS--- 134 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc----------CC---
Confidence 78999999999999999998886643210 01122467788889999999999987755521 12
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 008982 170 EKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 170 ~~~v~~F~~YA~~vf~~fG 188 (547)
+...+...+.++.+.+ +|
T Consensus 135 ~~~~~~~~~~~~~~~~-~G 152 (259)
T cd07939 135 RADPDFLIEFAEVAQE-AG 152 (259)
T ss_pred CCCHHHHHHHHHHHHH-CC
Confidence 2245667777776643 45
No 67
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.39 E-value=1.6e+02 Score=31.46 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCch
Q 008982 91 IELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPA 159 (547)
Q Consensus 91 eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~ 159 (547)
-+++.+|++|.++..|=+=|. |++ .-.+|..-.+|-+++.++|.++||-=++-+.-+|.+.
T Consensus 111 ws~~rike~GadavK~Llyy~---pD~-----~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~ 171 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYD---VDG-----DEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERI 171 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEEC---CCC-----CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc
Confidence 368999999999999988886 543 2468999999999999999999999999888776553
No 68
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=39.35 E-value=75 Score=29.25 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=39.5
Q ss_pred hHHHHHHHHhcCCCeEEeccc--ccc-cCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 008982 89 PDIELKLAKDTGVSVFRLGID--WSR-IMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF 153 (547)
Q Consensus 89 ~~eDl~l~k~lG~~~yRfsI~--WsR-I~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~ 153 (547)
.++=++.||++|+|+.-+... +-- -.|+.. |. -....+ -|...++|++|.++||++++=+-
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~--~~-~hp~L~-~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKV--GP-RHPGLK-RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCC--Cc-CCCCCC-cCHHHHHHHHHHHCCCEEEEEEe
Confidence 356689999999999998332 110 123220 11 122223 47788999999999999998553
No 69
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=37.92 E-value=66 Score=35.96 Aligned_cols=73 Identities=19% Similarity=0.331 Sum_probs=55.1
Q ss_pred CCChHHH-----HHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchh
Q 008982 86 WSDPDIE-----LKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAW 160 (547)
Q Consensus 86 ~~~~~eD-----l~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~w 160 (547)
|..|.+| ++.+.+.|++.+|+.++-+.+ +--...|+.++++|+....++.+-..|
T Consensus 89 ~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~------------------~n~~~~i~~ak~~G~~v~~~i~~t~~p-- 148 (467)
T PRK14041 89 YRHYADDVVELFVKKVAEYGLDIIRIFDALNDI------------------RNLEKSIEVAKKHGAHVQGAISYTVSP-- 148 (467)
T ss_pred cccccchhhHHHHHHHHHCCcCEEEEEEeCCHH------------------HHHHHHHHHHHHCCCEEEEEEEeccCC--
Confidence 4567778 899999999999999866542 223567899999999999888664445
Q ss_pred hhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 008982 161 AGEYGGWKLEKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 161 L~~~GGW~n~~~v~~F~~YA~~vf~~fG 188 (547)
....+++.+.|+.+.+ .|
T Consensus 149 ---------~~t~e~~~~~a~~l~~-~G 166 (467)
T PRK14041 149 ---------VHTLEYYLEFARELVD-MG 166 (467)
T ss_pred ---------CCCHHHHHHHHHHHHH-cC
Confidence 2357888999987654 45
No 70
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=37.75 E-value=47 Score=33.12 Aligned_cols=60 Identities=27% Similarity=0.456 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCc-----CC--HHHHHHHHHHHHHHHHcCCeEEEEec
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKET-----VN--FAALERYKWIINRVRSYGMKVMLTLF 153 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~-----vN--~~gl~~Y~~lId~L~~~GI~PiVTL~ 153 (547)
.+-|+-||+|||+++-++--+.. |... .| ... || .-..+=+++||++|.++||++|+++.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~--~~~~-~g-Y~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFES--PNGY-HG-YDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EES--SSST-TT-TSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceeccccccc--cccc-cc-ccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 45688999999999998765542 1000 00 001 11 11244568999999999999999874
No 71
>PRK12677 xylose isomerase; Provisional
Probab=37.58 E-value=5.2e+02 Score=28.07 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=47.7
Q ss_pred cCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEE-EEecCCCCchhh
Q 008982 83 LRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVM-LTLFHHSLPAWA 161 (547)
Q Consensus 83 ~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~Pi-VTL~HwDlP~wL 161 (547)
...+ ..++-++.++++|++.+=|.. ..+.|-. ....+--....++-+.|.++||+.. +|...|..|.+
T Consensus 28 ~~~~-~~~E~v~~~a~~Gf~gVElh~--~~l~p~~-------~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~- 96 (384)
T PRK12677 28 RPPL-DPVEAVHKLAELGAYGVTFHD--DDLVPFG-------ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF- 96 (384)
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEecc--cccCCCC-------CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc-
Confidence 3444 478999999999999886632 3345532 1111111235677888889999955 66665555543
Q ss_pred hhhCCCCCh
Q 008982 162 GEYGGWKLE 170 (547)
Q Consensus 162 ~~~GGW~n~ 170 (547)
..|++.++
T Consensus 97 -~~g~lts~ 104 (384)
T PRK12677 97 -KDGAFTSN 104 (384)
T ss_pred -cCCcCCCC
Confidence 34788874
No 72
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=37.25 E-value=1.6e+02 Score=31.36 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEE-EEecCCCCchhhhhhCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVM-LTLFHHSLPAWAGEYGGWK 168 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~Pi-VTL~HwDlP~wL~~~GGW~ 168 (547)
++.++.|+++|++. +||...-.-+.- +.. -|... ..+-+.+.|+.+++.||..+ +.| =+++|.
T Consensus 99 ~e~l~~l~~~G~~r--vsiGvqS~~d~~-L~~-l~R~~--~~~~~~~ai~~l~~~g~~~v~~dl-i~GlPg--------- 162 (374)
T PRK05799 99 EEKLKILKSMGVNR--LSIGLQAWQNSL-LKY-LGRIH--TFEEFLENYKLARKLGFNNINVDL-MFGLPN--------- 162 (374)
T ss_pred HHHHHHHHHcCCCE--EEEECccCCHHH-HHH-cCCCC--CHHHHHHHHHHHHHcCCCcEEEEe-ecCCCC---------
Confidence 78999999999995 555444443321 000 02111 13445678999999999855 444 366773
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcceeEEEecCcch
Q 008982 169 LEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHV 202 (547)
Q Consensus 169 n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~ 202 (547)
++.+.|.+-.+.+.+.=-+.|..+.-.-+|..
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT 194 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGT 194 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCC
Confidence 24455666666654432255544443336654
No 73
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=36.86 E-value=97 Score=32.19 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=62.2
Q ss_pred hHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecC-CCCchhhhhhCCC
Q 008982 89 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFH-HSLPAWAGEYGGW 167 (547)
Q Consensus 89 ~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~H-wDlP~wL~~~GGW 167 (547)
-.+|+++..+.|++.+++.++=|...-.. ..+.=-++.++-..+.|+.++++|++..+++.. |..|. .|.
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~----n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~-----~~~ 151 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQK----NINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY-----EGE 151 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHH----HhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC-----CCC
Confidence 48899999999999999998766543211 012223467888899999999999999887764 55552 232
Q ss_pred CChhhHHHHHHHHHHHHHHhC
Q 008982 168 KLEKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 168 ~n~~~v~~F~~YA~~vf~~fG 188 (547)
...+.+.++++.+.+ .|
T Consensus 152 ---~~~~~~~~~~~~~~~-~G 168 (287)
T PRK05692 152 ---VPPEAVADVAERLFA-LG 168 (287)
T ss_pred ---CCHHHHHHHHHHHHH-cC
Confidence 346778888888765 45
No 74
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=36.23 E-value=88 Score=33.25 Aligned_cols=69 Identities=13% Similarity=0.215 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCeEEEEecCC-----CCchhhhhhCCCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhc
Q 008982 135 KWIINRVRSYGMKVMLTLFHH-----SLPAWAGEYGGWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCML 206 (547)
Q Consensus 135 ~~lId~L~~~GI~PiVTL~Hw-----DlP~wL~~~GGW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~ 206 (547)
+.++++|.+.|++.++.+.-+ ..|.. ..+=-|.|++..++|.+..+.+.+ .|- .-+|+=+|||.+++..
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~-~~~pDftnp~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSP-GLYPDLGRPDVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCC-ceeeCCCCHHHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccCC
Confidence 579999999999877755421 11100 001137789999998877655443 343 3489999999987653
No 75
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=35.14 E-value=6.3e+02 Score=27.61 Aligned_cols=92 Identities=21% Similarity=0.198 Sum_probs=53.4
Q ss_pred hcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHH--HHHHHHHcCCeEEEEecCCCCchhhhh----hCCCCChh
Q 008982 98 DTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKW--IINRVRSYGMKVMLTLFHHSLPAWAGE----YGGWKLEK 171 (547)
Q Consensus 98 ~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~--lId~L~~~GI~PiVTL~HwDlP~wL~~----~GGW~n~~ 171 (547)
++|++..|+-|.=.+.--. |..|. .|++ +-...+.+|++.|.|= |.-|.|.-. .||=..+-
T Consensus 77 ~lg~si~Rv~I~~ndfsl~-------g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~L 143 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG-------GSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRL 143 (433)
T ss_pred ccCceEEEEEecccccccC-------CCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCcccccc
Confidence 4778888887765544332 34443 2333 3344778999999886 778888642 35511222
Q ss_pred hHHHHHHHHHHHH------HHhCCcceeEEEecCcch
Q 008982 172 TIDYFMDFTRLVV------DSVSDIVDYWVTFNEPHV 202 (547)
Q Consensus 172 ~v~~F~~YA~~vf------~~fGDrVk~WiT~NEP~~ 202 (547)
-.+.+++||+++. ++-|--+..-..=|||.-
T Consensus 144 k~e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~ 180 (433)
T COG5520 144 KYEKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDY 180 (433)
T ss_pred chhHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCcc
Confidence 3445555655543 333545566667899963
No 76
>PRK05402 glycogen branching enzyme; Provisional
Probab=34.65 E-value=2.2e+02 Score=33.53 Aligned_cols=87 Identities=10% Similarity=0.154 Sum_probs=56.4
Q ss_pred HHH-HHHHhcCCCeEEeccccc---------------ccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEe--
Q 008982 91 IEL-KLAKDTGVSVFRLGIDWS---------------RIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL-- 152 (547)
Q Consensus 91 eDl-~l~k~lG~~~yRfsI~Ws---------------RI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL-- 152 (547)
+.+ .-||+||++++=+.=-.. .|.|. .|+ .+=.++||++|.++||++|+.+
T Consensus 269 ~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~------~Gt-----~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 269 DQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR------FGT-----PDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcc------cCC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 453 778999999987654321 12221 233 2335899999999999999985
Q ss_pred cCCCC-----------chhhhh------hC-------CCCChhhHHHHHHHHHHHHHHhC
Q 008982 153 FHHSL-----------PAWAGE------YG-------GWKLEKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 153 ~HwDl-----------P~wL~~------~G-------GW~n~~~v~~F~~YA~~vf~~fG 188 (547)
.|+.. |.+... +. .+.++++.+.+.+-++.-+++|+
T Consensus 338 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 338 AHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 45521 111110 11 23478888888888888888886
No 77
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.06 E-value=94 Score=34.93 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=69.5
Q ss_pred CCChHHHHHHHHhcCCCeEEec----ccccccCCC-----------------------CCCCCCcCcCCHHHHH----HH
Q 008982 86 WSDPDIELKLAKDTGVSVFRLG----IDWSRIMPA-----------------------EPVNGLKETVNFAALE----RY 134 (547)
Q Consensus 86 ~~~~~eDl~l~k~lG~~~yRfs----I~WsRI~P~-----------------------~~~~G~~g~vN~~gl~----~Y 134 (547)
|.+|+..|+-|+=.|+|..=.. +-|-+|+-. |-+.+-.|....+... --
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6799999999999999976433 123333221 0011112444444322 23
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCchhhhh---------hCCCCC---------------hhhHHHHHHHHHHHHHHhCCc
Q 008982 135 KWIINRVRSYGMKVMLTLFHHSLPAWAGE---------YGGWKL---------------EKTIDYFMDFTRLVVDSVSDI 190 (547)
Q Consensus 135 ~~lId~L~~~GI~PiVTL~HwDlP~wL~~---------~GGW~n---------------~~~v~~F~~YA~~vf~~fGDr 190 (547)
+++|+++++.||+|++--|-=-.|.+|.. -+-|-+ +-+.+-=..|-+...++||.
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~- 235 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGG- 235 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCC-
Confidence 57999999999999998887778888752 233432 22333334566667788996
Q ss_pred ceeE---EEecCc
Q 008982 191 VDYW---VTFNEP 200 (547)
Q Consensus 191 Vk~W---iT~NEP 200 (547)
|.+- =||||.
T Consensus 236 ~tniy~~DpFNE~ 248 (666)
T KOG2233|consen 236 VTNIYSADPFNEI 248 (666)
T ss_pred cccccccCccccc
Confidence 3322 278883
No 78
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=33.21 E-value=2.5e+02 Score=30.51 Aligned_cols=122 Identities=11% Similarity=0.140 Sum_probs=69.6
Q ss_pred HHHHhhhhcceecccccccCCCCCCCCccccccccccceeccCCCccccCCCCChHHHHHHHHhc-CCCeEEeccccccc
Q 008982 35 EAMIRGFQKYIEVDEGEEVSGENEVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDT-GVSVFRLGIDWSRI 113 (547)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eDl~l~k~l-G~~~yRfsI~WsRI 113 (547)
+++++.+..|.-. .||+ .|.....++.....|..+.+-.. --+|++.+..+ ++. .++++-
T Consensus 2 ~~~~~~~~~~~~~-----------~~~w--~~~~~~tRf~~f~~~g~~r~~~e-~~~d~~~v~~L~~~~-~~v~lH---- 62 (378)
T TIGR02635 2 EEVEKKLKALKIE-----------TPSW--AYGNSGTRFKVFHQEGAARNVFE-KIEDAALVHRLTGIC-PTVALH---- 62 (378)
T ss_pred hHHHHHHHhcEee-----------cccc--ccCCCCcccccCCCCCCCCCHHH-HHHHHHHHHhhcCCC-Cceeec----
Confidence 4556666555432 4443 23333334443333444443332 24677777777 555 666552
Q ss_pred CCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEE-EEecCCCCchhhhhhCCCCCh--hhHHHHHHHHHHHH---HHh
Q 008982 114 MPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVM-LTLFHHSLPAWAGEYGGWKLE--KTIDYFMDFTRLVV---DSV 187 (547)
Q Consensus 114 ~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~Pi-VTL~HwDlP~wL~~~GGW~n~--~~v~~F~~YA~~vf---~~f 187 (547)
.|.+ .. ..+.++.+.+.++||+.. ++.-.|..|.. .+|.+.|+ ++.+.=.++++.|. +++
T Consensus 63 ~~~d------~~------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~--~~GSLt~pD~~vR~~AIe~~k~~idiA~eL 128 (378)
T TIGR02635 63 IPWD------RV------EDYEELARYAEELGLKIGAINPNLFQDDDY--KFGSLTHPDKRIRRKAIDHLLECVDIAKKT 128 (378)
T ss_pred cCCc------cc------cCHHHHHHHHHHcCCceeeeeCCccCCccc--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2221 11 235778888999999987 78776655543 45778875 45555566666654 667
Q ss_pred CC
Q 008982 188 SD 189 (547)
Q Consensus 188 GD 189 (547)
|.
T Consensus 129 Ga 130 (378)
T TIGR02635 129 GS 130 (378)
T ss_pred CC
Confidence 76
No 79
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=33.06 E-value=1.2e+02 Score=32.49 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=57.8
Q ss_pred hHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCC
Q 008982 89 PDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWK 168 (547)
Q Consensus 89 ~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~ 168 (547)
-++|++.+.+.|++.+|++++-|.+.-... -+.--.+.++-..+.|..++++|++..+++-..
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~----~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda------------- 135 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYK----LKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDA------------- 135 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec-------------
Confidence 489999999999999999998877644210 012234567778899999999999988776421
Q ss_pred ChhhHHHHHHHHHHHHHHhC
Q 008982 169 LEKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 169 n~~~v~~F~~YA~~vf~~fG 188 (547)
.+...+.+.++++.+. ..|
T Consensus 136 ~r~~~~~l~~~~~~~~-~~g 154 (363)
T TIGR02090 136 TRTDIDFLIKVFKRAE-EAG 154 (363)
T ss_pred CCCCHHHHHHHHHHHH-hCC
Confidence 1234566777777654 344
No 80
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=33.04 E-value=1.8e+02 Score=29.86 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 169 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n 169 (547)
.+|++.+.+.|++.+|+++..+ .++-..+.++.++++|+++.+++.+-.
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~------------------~~~~~~~~i~~ak~~G~~v~~~~~~a~------------- 133 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH------------------EFDEALPLIKAIKEKGYEVFFNLMAIS------------- 133 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc------------------cHHHHHHHHHHHHHCCCeEEEEEEeec-------------
Confidence 5899999999999999987442 245557899999999999999987621
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 008982 170 EKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 170 ~~~v~~F~~YA~~vf~~fG 188 (547)
....+.+.++++.+.+ +|
T Consensus 134 ~~~~~~~~~~~~~~~~-~g 151 (266)
T cd07944 134 GYSDEELLELLELVNE-IK 151 (266)
T ss_pred CCCHHHHHHHHHHHHh-CC
Confidence 1246778888888754 45
No 81
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=32.75 E-value=1.4e+02 Score=31.63 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCeEEEEecCCCC-----chhh--hh--------hC---------------CCCChhhHHHHHHHHHHHH
Q 008982 135 KWIINRVRSYGMKVMLTLFHHSL-----PAWA--GE--------YG---------------GWKLEKTIDYFMDFTRLVV 184 (547)
Q Consensus 135 ~~lId~L~~~GI~PiVTL~HwDl-----P~wL--~~--------~G---------------GW~n~~~v~~F~~YA~~vf 184 (547)
+.+|++|.++|++.++.+.-+-. |..- .+ .| .|.||+.+++|.+..+.++
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 57999999999999888875532 2211 10 01 3679999999999988776
Q ss_pred HHhC-CcceeEEEecCcchhh
Q 008982 185 DSVS-DIVDYWVTFNEPHVFC 204 (547)
Q Consensus 185 ~~fG-DrVk~WiT~NEP~~~~ 204 (547)
...+ .-+-.|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 5432 2357899999998764
No 82
>PLN02784 alpha-amylase
Probab=32.66 E-value=87 Score=37.62 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=47.4
Q ss_pred CCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHH--HHHHHHHHHHHHHHcCCeEEEEe--cC
Q 008982 84 RFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFA--ALERYKWIINRVRSYGMKVMLTL--FH 154 (547)
Q Consensus 84 ~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~--gl~~Y~~lId~L~~~GI~PiVTL--~H 154 (547)
.||....+.++-|++||++++=++-...-.-+.|--...--.+|.. ..+=++.||++|.++||++|+.+ .|
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 5677888999999999999998877654443332100000011111 23446899999999999999974 46
No 83
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=32.37 E-value=1.7e+02 Score=33.84 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=49.5
Q ss_pred CCChHHH-----HHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchh
Q 008982 86 WSDPDIE-----LKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAW 160 (547)
Q Consensus 86 ~~~~~eD-----l~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~w 160 (547)
|.+|.+| ++..++.|++.+|+..+.+-+ +--...|+.++++|....+++.+=+.|
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------------~~~~~ai~~ak~~G~~~~~~i~yt~~p-- 150 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------------RNLETALKAVRKVGAHAQGTLSYTTSP-- 150 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------------HHHHHHHHHHHHcCCeEEEEEEEeeCC--
Confidence 4455555 999999999999999654332 223567888999999887777653444
Q ss_pred hhhhCCCCChhhHHHHHHHHHHHHH
Q 008982 161 AGEYGGWKLEKTIDYFMDFTRLVVD 185 (547)
Q Consensus 161 L~~~GGW~n~~~v~~F~~YA~~vf~ 185 (547)
..+.+++.+.|+.+.+
T Consensus 151 ---------~~~~~~~~~~a~~l~~ 166 (593)
T PRK14040 151 ---------VHTLQTWVDLAKQLED 166 (593)
T ss_pred ---------ccCHHHHHHHHHHHHH
Confidence 2256777777777643
No 84
>PLN02389 biotin synthase
Probab=32.13 E-value=93 Score=33.76 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=41.8
Q ss_pred ChHHHHHHHHhcCCCeEEecccccc-cCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 008982 88 DPDIELKLAKDTGVSVFRLGIDWSR-IMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF 153 (547)
Q Consensus 88 ~~~eDl~l~k~lG~~~yRfsI~WsR-I~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~ 153 (547)
.-++.++.||+.|++.|-.+++=++ ++|.- ...- ..+.+-+.|+.+++.||+...++.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i-----~~~~---s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNV-----ITTR---SYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCc-----CCCC---CHHHHHHHHHHHHHcCCeEeEEEE
Confidence 3489999999999999999886232 44431 0111 345667899999999999877754
No 85
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=31.82 E-value=1e+02 Score=33.61 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=38.2
Q ss_pred CChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEe
Q 008982 87 SDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL 152 (547)
Q Consensus 87 ~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL 152 (547)
.+|++||++++++||+.|=+.|- -+ ...+.+-| ..+++.+.+.|.+.++.+
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig----~~--------d~~~~~~l---~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG----SS--------DSWQPDQL---ADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc----cC--------CcccHHHH---HHHHHHHHhcCCEEEEEe
Confidence 46899999999999999998886 11 23444444 578888889997777654
No 86
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=31.58 E-value=1.5e+02 Score=28.34 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCc
Q 008982 91 IELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLP 158 (547)
Q Consensus 91 eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP 158 (547)
-|.+.+|+.|++..=+=+. + | .+.+|+ +|..-++.+++.|| .+..|||-.|
T Consensus 12 id~~~~k~~gi~fviiKat------e----G-~~y~D~----~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 12 INFNAVKDSGVEVVYIKAT------E----G-TTFVDS----YFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CCHHHHHhCCCeEEEEEec------C----C-CcccCH----hHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 3678888888775433221 1 2 245675 57889999999999 3688998654
No 87
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=31.57 E-value=2.1e+02 Score=33.57 Aligned_cols=23 Identities=17% Similarity=0.509 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEec
Q 008982 131 LERYKWIINRVRSYGMKVMLTLF 153 (547)
Q Consensus 131 l~~Y~~lId~L~~~GI~PiVTL~ 153 (547)
++=+++||++|.++||++|+.+.
T Consensus 244 ~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 244 VAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
Confidence 34479999999999999999854
No 88
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=30.76 E-value=1.8e+02 Score=30.80 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCch--------hhh--hh--------------------C---CCCChhhHHHHHHHHH
Q 008982 135 KWIINRVRSYGMKVMLTLFHHSLPA--------WAG--EY--------------------G---GWKLEKTIDYFMDFTR 181 (547)
Q Consensus 135 ~~lId~L~~~GI~PiVTL~HwDlP~--------wL~--~~--------------------G---GW~n~~~v~~F~~YA~ 181 (547)
+++|++|.+.|++.++.+.-+-.+. .-+ +. + -|.|++.+++|.+.-+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 6899999999999999886654332 100 00 1 2678999999988888
Q ss_pred HHHHHhCCcceeEEEecCcchh
Q 008982 182 LVVDSVSDIVDYWVTFNEPHVF 203 (547)
Q Consensus 182 ~vf~~fGDrVk~WiT~NEP~~~ 203 (547)
.++..+|- --+|+=+|||..+
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~~ 169 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSNF 169 (339)
T ss_pred HHHhcCCC-cEEEecCCCCchH
Confidence 77776663 3578889999753
No 89
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=30.17 E-value=1.9e+02 Score=32.13 Aligned_cols=69 Identities=14% Similarity=0.306 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 169 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n 169 (547)
++|++.+.+.|++.+|+.++-+.+. | ....|+.++++|+.+.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~------------n------~~~~v~~ak~~G~~v~~~i~~t~~p----------- 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR------------N------LETAVKATKKAGGHAQVAISYTTSP----------- 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH------------H------HHHHHHHHHHcCCeEEEEEEeecCC-----------
Confidence 5677999999999999998665431 1 3458999999999998888765545
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 008982 170 EKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 170 ~~~v~~F~~YA~~vf~~fG 188 (547)
....+.+.+.|+.+.+ .|
T Consensus 150 ~~~~~~~~~~a~~l~~-~G 167 (448)
T PRK12331 150 VHTIDYFVKLAKEMQE-MG 167 (448)
T ss_pred CCCHHHHHHHHHHHHH-cC
Confidence 2456778888888744 45
No 90
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=29.95 E-value=1.5e+02 Score=31.86 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 169 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n 169 (547)
++|++.+.+.|++.+++.++-|.+.-... -+.=-.+.++-..+.|+.++++|+++.+++-. ++
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~----~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed----------~~--- 137 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAK----LRKDRAWVLERLARLVSFARDRGLFVSVGGED----------AS--- 137 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHH----hCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC----------CC---
Confidence 78999999999999999998876433210 01112456788889999999999997765421 22
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 008982 170 EKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 170 ~~~v~~F~~YA~~vf~~fG 188 (547)
+...+.+.++++.+.+ .|
T Consensus 138 r~~~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 138 RADPDFLVELAEVAAE-AG 155 (365)
T ss_pred CCCHHHHHHHHHHHHH-cC
Confidence 2345777778877654 55
No 91
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=29.68 E-value=1.6e+02 Score=31.56 Aligned_cols=86 Identities=12% Similarity=0.009 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecC-CCCchhhhhhCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFH-HSLPAWAGEYGGWK 168 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~H-wDlP~wL~~~GGW~ 168 (547)
.+|++.+.+.|++.+.+.++=|...-... .+.--.+.++-+.++|+.++++|++..+++-. |..|. .|
T Consensus 124 ~~die~A~~~g~~~v~i~~s~Sd~h~~~n----~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~-----~~-- 192 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFASASESFSKSN----INCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI-----EG-- 192 (347)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc-----cC--
Confidence 79999999999999999987776644320 12334678888999999999999999887753 55442 22
Q ss_pred ChhhHHHHHHHHHHHHHHhC
Q 008982 169 LEKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 169 n~~~v~~F~~YA~~vf~~fG 188 (547)
+-.++.+.++++.+.+ .|
T Consensus 193 -r~~~~~l~~~~~~~~~-~G 210 (347)
T PLN02746 193 -PVPPSKVAYVAKELYD-MG 210 (347)
T ss_pred -CCCHHHHHHHHHHHHH-cC
Confidence 2346778888888754 45
No 92
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=29.41 E-value=2.2e+02 Score=29.77 Aligned_cols=84 Identities=21% Similarity=0.160 Sum_probs=50.6
Q ss_pred HHHHhcCCCeEEeccc--ccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCChh
Q 008982 94 KLAKDTGVSVFRLGID--WSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLEK 171 (547)
Q Consensus 94 ~l~k~lG~~~yRfsI~--WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n~~ 171 (547)
+.+.+.|++++=++.- -..-.|.- .| ....+ ........|..|+++|++++|.+=.|.-... . .+..
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w--~g-~~~~~--~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-~-----~~~~ 87 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAW--GG-SYPLD--QGGWIKSDIAALRAAGGDVIVSFGGASGTPL-A-----TSCT 87 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccC--CC-CCCcc--cchhHHHHHHHHHHcCCeEEEEecCCCCCcc-c-----cCcc
Confidence 5778899999887643 22222210 00 00111 0123357899999999999999854432110 0 1345
Q ss_pred hHHHHHHHHHHHHHHhC
Q 008982 172 TIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 172 ~v~~F~~YA~~vf~~fG 188 (547)
.++.|++....+.+.|+
T Consensus 88 ~~~~~~~a~~~~i~~y~ 104 (294)
T cd06543 88 SADQLAAAYQKVIDAYG 104 (294)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 77888888888888887
No 93
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=29.36 E-value=2.2e+02 Score=31.45 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCCeEEecc-cccc-cCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCc
Q 008982 90 DIELKLAKDTGVSVFRLGI-DWSR-IMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLP 158 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI-~WsR-I~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP 158 (547)
++.+++|+++|++.+-++| +-+. ++-. ..-..+ ++.+.+.+..|+++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~-----~~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKN-----IKKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHH-----hcCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 6789999999999888888 3322 2211 001122 34567899999999999988876 3556
No 94
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=28.88 E-value=1.4e+02 Score=32.10 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCCh
Q 008982 91 IELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLE 170 (547)
Q Consensus 91 eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n~ 170 (547)
.-|++|.+.|++..=+|+ +.|++ .....+..+.++++++.++|+++||... |+-|.. -|| +.
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl----~~~~~--------~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~-l~~-S~ 81 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSL----LIPEE--------DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE-LNI-SL 81 (360)
T ss_pred HHHHHHHHcCccceeeec----ccCCc--------hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh-cCC-Ch
Confidence 456788888887666554 34432 3446789999999999999999999984 887765 344 33
Q ss_pred hhHHHHHHHHHHHHHHhCCcceeEEEecCc
Q 008982 171 KTIDYFMDFTRLVVDSVSDIVDYWVTFNEP 200 (547)
Q Consensus 171 ~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP 200 (547)
..++.|.+.+- .|=|.+|=++.-|.
T Consensus 82 ~~l~~f~e~G~-----~glRlD~gfS~eei 106 (360)
T COG3589 82 DNLSRFQELGV-----DGLRLDYGFSGEEI 106 (360)
T ss_pred HHHHHHHHhhh-----hheeecccCCHHHH
Confidence 34455544422 23355555544443
No 95
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=28.81 E-value=2.2e+02 Score=30.43 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=50.8
Q ss_pred HHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCch
Q 008982 92 ELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPA 159 (547)
Q Consensus 92 Dl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~ 159 (547)
+++.+|++|.++..|=+=|. |++ .-.+|..-.+|-+++.++|.++||-=++-+.-+|.+.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~-----~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDD-----AEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCC-----ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 58999999999999988774 332 1468999999999999999999999999988887664
No 96
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=28.59 E-value=6.3e+02 Score=25.54 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCC--CeEEecccccccCCCCCCCCCcC--cCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhC
Q 008982 90 DIELKLAKDTGV--SVFRLGIDWSRIMPAEPVNGLKE--TVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYG 165 (547)
Q Consensus 90 ~eDl~l~k~lG~--~~yRfsI~WsRI~P~~~~~G~~g--~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~G 165 (547)
.+-++.+++.|+ +++=+.+.|..-.- .- ++|.+-..--+++|++|.++|++.++.+.
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~~~-------~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~------------ 87 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDGYG-------DFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID------------ 87 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccCCc-------eeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC------------
Confidence 455666666554 46666666653221 12 34443333346899999999999987553
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhh
Q 008982 166 GWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFC 204 (547)
Q Consensus 166 GW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~ 204 (547)
|.+.++|.+..+......|- --+|+=+|||..+.
T Consensus 88 ----P~v~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~~ 121 (265)
T cd06589 88 ----PYIREWWAEVVKKLLVSLGV-DGFWTDMGEPSPGD 121 (265)
T ss_pred ----hhHHHHHHHHHHHhhccCCC-CEEeccCCCCCcCC
Confidence 33367777766655444552 35788899997653
No 97
>PRK12313 glycogen branching enzyme; Provisional
Probab=28.55 E-value=3.4e+02 Score=31.39 Aligned_cols=88 Identities=13% Similarity=0.212 Sum_probs=56.7
Q ss_pred HHH-HHHHHhcCCCeEEeccccc---------------ccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEe-
Q 008982 90 DIE-LKLAKDTGVSVFRLGIDWS---------------RIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL- 152 (547)
Q Consensus 90 ~eD-l~l~k~lG~~~yRfsI~Ws---------------RI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL- 152 (547)
.+. |+-||+||++++=+.=-+. .|.|. -|+ .+=+++||++|.++||++|+.+
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~------~Gt-----~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR------YGT-----PEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC------CCC-----HHHHHHHHHHHHHCCCEEEEEEC
Confidence 356 4899999999997544221 12221 233 2346899999999999999984
Q ss_pred -cCCCCch----hhh--------h-----hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 008982 153 -FHHSLPA----WAG--------E-----YGGW-------KLEKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 153 -~HwDlP~----wL~--------~-----~GGW-------~n~~~v~~F~~YA~~vf~~fG 188 (547)
.|..-.. ++. + ..+| .|+++.+.+.+=++.-+++||
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4542110 110 0 0123 368888888888888888886
No 98
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=28.06 E-value=4.2e+02 Score=29.26 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCCeEEecc-cccc-cCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcC-CeEEEEecCCCCchhhhhhCC
Q 008982 90 DIELKLAKDTGVSVFRLGI-DWSR-IMPAEPVNGLKETVNFAALERYKWIINRVRSYG-MKVMLTLFHHSLPAWAGEYGG 166 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI-~WsR-I~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~G-I~PiVTL~HwDlP~wL~~~GG 166 (547)
++.+++|+++|++-+.++| +-+. ++.. -|... ..+-..+.|+.+++.| +.+.++|. +++|..
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~------lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPgq------ 227 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRR------AGRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPGQ------ 227 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHH------hCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCCC------
Confidence 7899999999999888877 3322 2111 01111 1233456888999999 56666665 677731
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchh
Q 008982 167 WKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVF 203 (547)
Q Consensus 167 W~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~ 203 (547)
+.+.|.+=.+.+.+-=-+.|..+...-+|...
T Consensus 228 -----T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~ 259 (449)
T PRK09058 228 -----TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTP 259 (449)
T ss_pred -----CHHHHHHHHHHHHhcCCCEEEEeccccCCCCH
Confidence 33444444555544334677777766677653
No 99
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=28.04 E-value=1.7e+02 Score=31.19 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCCeEEecc-ccc-ccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCC
Q 008982 90 DIELKLAKDTGVSVFRLGI-DWS-RIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGW 167 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI-~Ws-RI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW 167 (547)
++.++.|+++|++.+.++| +-+ .++.. -|.. -..+-+.+.|+.+++.|+.++-.-+=+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~------lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg-------- 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLF------LGRQ--HSAKNIAPAIETALKSGIENISLDLMYGLPL-------- 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHH------hCCC--CCHHHHHHHHHHHHHcCCCeEEEeccCCCCC--------
Confidence 7899999999999666666 232 23221 0111 1134557899999999998664433467773
Q ss_pred CChhhHHHHHHHHHHHHH
Q 008982 168 KLEKTIDYFMDFTRLVVD 185 (547)
Q Consensus 168 ~n~~~v~~F~~YA~~vf~ 185 (547)
++.+.|.+-.+.+.+
T Consensus 164 ---qt~~~~~~~l~~~~~ 178 (360)
T TIGR00539 164 ---QTLNSLKEELKLAKE 178 (360)
T ss_pred ---CCHHHHHHHHHHHHc
Confidence 234455555555543
No 100
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=26.79 E-value=1.5e+02 Score=31.57 Aligned_cols=67 Identities=22% Similarity=0.214 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 169 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n 169 (547)
.+|++.+.+.|++.+|+...+++.. --.+.|+.++++|++..++|..- .
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~~------------------~~~~~i~~ak~~G~~v~~~l~~a-------------~ 139 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEAD------------------VSEQHIGLARELGMDTVGFLMMS-------------H 139 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchHH------------------HHHHHHHHHHHCCCeEEEEEEec-------------c
Confidence 5899999999999999988654431 12578999999999999988742 1
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 008982 170 EKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 170 ~~~v~~F~~YA~~vf~~fG 188 (547)
....+.+.+.++.+. .+|
T Consensus 140 ~~~~e~l~~~a~~~~-~~G 157 (337)
T PRK08195 140 MAPPEKLAEQAKLME-SYG 157 (337)
T ss_pred CCCHHHHHHHHHHHH-hCC
Confidence 224577888888864 466
No 101
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=26.60 E-value=3.4e+02 Score=30.90 Aligned_cols=106 Identities=13% Similarity=0.255 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCCeEEeccc--ccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCC
Q 008982 90 DIELKLAKDTGVSVFRLGID--WSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGW 167 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~--WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW 167 (547)
++.+++|+++|++.+-+++. -.+++-.= + .| .+ ++-..+.++.+++.|++..+.|. ++||.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~i---n-Rg-ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg-------- 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERT---K-RG-HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG-------- 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHh---C-CC-CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC--------
Confidence 89999999999997777761 22222210 0 11 11 23335678889999998666665 67773
Q ss_pred CChhhHHHHHHHHHHHHH--Hh-CCcceeEEEecCcchhhhccccCCcCCC
Q 008982 168 KLEKTIDYFMDFTRLVVD--SV-SDIVDYWVTFNEPHVFCMLTYCAGTWPG 215 (547)
Q Consensus 168 ~n~~~v~~F~~YA~~vf~--~f-GDrVk~WiT~NEP~~~~~~gY~~G~~pP 215 (547)
++.+.+.+=++.+++ .+ -|.|+.+-+.=.|...-..-|..|.|.|
T Consensus 269 ---qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p 316 (522)
T TIGR01211 269 ---SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKP 316 (522)
T ss_pred ---CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCC
Confidence 233455555556664 34 3778887766566543333355666654
No 102
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=26.32 E-value=95 Score=31.66 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCeEEeccccc-ccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEe
Q 008982 90 DIELKLAKDTGVSVFRLGIDWS-RIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL 152 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~Ws-RI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL 152 (547)
+|.++.||++|++.+-++++-+ .+.+.- .+. ...+.+.+.++.++++||...+++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i-----~~~---~s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNI-----IST---HTYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhc-----cCC---CCHHHHHHHHHHHHHcCCEEEEeE
Confidence 8999999999999999999822 123320 111 134566788999999999865543
No 103
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=25.68 E-value=1.5e+02 Score=30.03 Aligned_cols=67 Identities=24% Similarity=0.252 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 169 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n 169 (547)
.+|++.+.+.|++.+|+.++.+.+. -..+.++.++++|++..+++-.- +..
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~------------------~~~~~i~~ak~~G~~v~~~~~~~----------~~~- 138 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD------------------VSEQHIGAARKLGMDVVGFLMMS----------HMA- 138 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH------------------HHHHHHHHHHHCCCeEEEEEEec----------cCC-
Confidence 6899999999999999988665431 12568999999999999998531 222
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 008982 170 EKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 170 ~~~v~~F~~YA~~vf~~fG 188 (547)
..+.+.+.++.+. ..|
T Consensus 139 --~~~~~~~~~~~~~-~~G 154 (263)
T cd07943 139 --SPEELAEQAKLME-SYG 154 (263)
T ss_pred --CHHHHHHHHHHHH-HcC
Confidence 2366777777764 344
No 104
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=25.54 E-value=3e+02 Score=28.86 Aligned_cols=98 Identities=21% Similarity=0.412 Sum_probs=62.3
Q ss_pred hHHHHHHHHhcCCCeEEecccc-------cccCCCCC-CCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEe-cCC----
Q 008982 89 PDIELKLAKDTGVSVFRLGIDW-------SRIMPAEP-VNGLKETVNFAALERYKWIINRVRSYGMKVMLTL-FHH---- 155 (547)
Q Consensus 89 ~~eDl~l~k~lG~~~yRfsI~W-------sRI~P~~~-~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL-~Hw---- 155 (547)
.++-++.|+++|+|++=+.+.+ |.++|... .+|..|. + .|.|....+|+++.++||+...-+ +-.
T Consensus 21 ~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 21 IDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 4677899999999998665543 33444210 1111111 1 134555679999999999987554 111
Q ss_pred ------CCchhhh--------hh----CC--CCC---hhhHHHHHHHHHHHHHHhC
Q 008982 156 ------SLPAWAG--------EY----GG--WKL---EKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 156 ------DlP~wL~--------~~----GG--W~n---~~~v~~F~~YA~~vf~~fG 188 (547)
..|.|+. .+ |+ |+| |++.++..+-++.++++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 2355532 12 22 564 7889999999999999995
No 105
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=25.33 E-value=1.5e+02 Score=33.85 Aligned_cols=64 Identities=17% Similarity=0.362 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCc-----CCH--HHHHHHHHHHHHHHHcCCeEEEEec
Q 008982 86 WSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKET-----VNF--AALERYKWIINRVRSYGMKVMLTLF 153 (547)
Q Consensus 86 ~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~-----vN~--~gl~~Y~~lId~L~~~GI~PiVTL~ 153 (547)
+.-..+.++-+++|||++.=++--+.. |... .| ... +|+ -..+=+++||++|.++||++|+.+.
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~-~g-Y~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVD-NG-YDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCCC-CC-CCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 333457889999999999977654321 1100 00 001 111 1234468999999999999999764
No 106
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=24.40 E-value=4.5e+02 Score=30.30 Aligned_cols=93 Identities=11% Similarity=0.170 Sum_probs=56.9
Q ss_pred HHH-HHHHhcCCCeEEe-ccccccc------CCCC--CCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec--CCC--
Q 008982 91 IEL-KLAKDTGVSVFRL-GIDWSRI------MPAE--PVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF--HHS-- 156 (547)
Q Consensus 91 eDl-~l~k~lG~~~yRf-sI~WsRI------~P~~--~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~--HwD-- 156 (547)
+.+ +-+|+||++++=+ .|..+.- .|.. ..+...|. .+=.++||++|.++||++|+.+. |..
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt-----~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGT-----PDDFMYFVDACHQAGIGVILDWVPGHFPKD 234 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCC-----HHHHHHHHHHHHHCCCEEEEEecccCcCCc
Confidence 454 8899999999987 3333210 0000 00001122 23358999999999999999855 542
Q ss_pred ---------Cchhhhh------hCC-------CCChhhHHHHHHHHHHHHHHhC
Q 008982 157 ---------LPAWAGE------YGG-------WKLEKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 157 ---------lP~wL~~------~GG-------W~n~~~v~~F~~YA~~vf~~fG 188 (547)
.|.+... ... +.++++.+.+.+-++.-+++|+
T Consensus 235 ~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 235 DHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1111110 011 2468889999999999999887
No 107
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=24.37 E-value=91 Score=33.33 Aligned_cols=110 Identities=22% Similarity=0.339 Sum_probs=56.5
Q ss_pred CCChHHHHHHHHhcCCCeEEec------------------------------ccccccCCCCCCCCCcCcCCHHHH----
Q 008982 86 WSDPDIELKLAKDTGVSVFRLG------------------------------IDWSRIMPAEPVNGLKETVNFAAL---- 131 (547)
Q Consensus 86 ~~~~~eDl~l~k~lG~~~yRfs------------------------------I~WsRI~P~~~~~G~~g~vN~~gl---- 131 (547)
|.||++.|+.|+=-|||.-=-- +.|.|.-- +.|-.|.+..+.+
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgN---l~gwgGPLp~~w~~~q~ 94 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGN---LQGWGGPLPQSWIDQQA 94 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS-----STT----TTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCC---cccCCCCCCHHHHHHHH
Confidence 6789999999999998864311 13333322 2344455554443
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCchhhhh---------hCCC--------CChhhHHHHHHHHHHHH----HHhCCc
Q 008982 132 ERYKWIINRVRSYGMKVMLTLFHHSLPAWAGE---------YGGW--------KLEKTIDYFMDFTRLVV----DSVSDI 190 (547)
Q Consensus 132 ~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~---------~GGW--------~n~~~v~~F~~YA~~vf----~~fGDr 190 (547)
+-=+++++++++.||+|++-=|-=-.|..|.+ .|.| ++| .-..|.+.++... +.|| .
T Consensus 95 ~Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~ 172 (333)
T PF05089_consen 95 ELQKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-T 172 (333)
T ss_dssp HHHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-C
Confidence 23367999999999999998776567887743 1223 333 2257777776655 6678 3
Q ss_pred ceeEE--EecCc
Q 008982 191 VDYWV--TFNEP 200 (547)
Q Consensus 191 Vk~Wi--T~NEP 200 (547)
-.++. +|||-
T Consensus 173 ~~~Y~~D~FnE~ 184 (333)
T PF05089_consen 173 DHIYAADPFNEG 184 (333)
T ss_dssp -SEEE--TTTTS
T ss_pred CceeCCCccCCC
Confidence 34443 67773
No 108
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.02 E-value=2.5e+02 Score=28.93 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec-CCCCchhhhhhCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF-HHSLPAWAGEYGGWK 168 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~-HwDlP~wL~~~GGW~ 168 (547)
.+|++.+.+.|++.+++.++=|.+.-... -+.--.+.++...+.+..++++|+++.++|- -|+.|. +|
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~----~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~-----~~-- 144 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKN----INCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY-----EG-- 144 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHH----cCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC-----CC--
Confidence 77999999999999999987765422210 1122256788889999999999999998876 355552 22
Q ss_pred ChhhHHHHHHHHHHHHHHhC
Q 008982 169 LEKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 169 n~~~v~~F~~YA~~vf~~fG 188 (547)
+...+.+.++++.+.+ .|
T Consensus 145 -~~~~~~~~~~~~~~~~-~G 162 (274)
T cd07938 145 -EVPPERVAEVAERLLD-LG 162 (274)
T ss_pred -CCCHHHHHHHHHHHHH-cC
Confidence 2356778888888754 45
No 109
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.80 E-value=1.1e+02 Score=30.52 Aligned_cols=68 Identities=13% Similarity=0.252 Sum_probs=44.2
Q ss_pred CCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEE-EecCCCCc
Q 008982 85 FWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVML-TLFHHSLP 158 (547)
Q Consensus 85 ~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiV-TL~HwDlP 158 (547)
+...+++=+++++++|.+..++...+ .|.. ..........++..+++.+.+.+.||...+ +++|++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~---~~~~---~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGK---RPAG---VSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCC---CCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 34566778899999999998864332 1211 001123344556778888889999999887 44666555
No 110
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=23.50 E-value=2e+02 Score=30.54 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 169 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n 169 (547)
.+|++.+.+.|++.+|+....+... --.+.|+.+++.|++..++|..- +
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d------------------~~~~~i~~ak~~G~~v~~~l~~s--~----------- 138 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEAD------------------VSEQHIGMARELGMDTVGFLMMS--H----------- 138 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHH------------------HHHHHHHHHHHcCCeEEEEEEcc--c-----------
Confidence 6899999999999999887554321 12578999999999999888531 1
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 008982 170 EKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 170 ~~~v~~F~~YA~~vf~~fG 188 (547)
....+.+.+.++.+. .+|
T Consensus 139 ~~~~e~l~~~a~~~~-~~G 156 (333)
T TIGR03217 139 MTPPEKLAEQAKLME-SYG 156 (333)
T ss_pred CCCHHHHHHHHHHHH-hcC
Confidence 224567888888864 466
No 111
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=23.49 E-value=2.4e+02 Score=28.11 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 008982 130 ALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKLEKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 130 gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n~~~v~~F~~YA~~vf~~fG 188 (547)
.++...+.|..|.+.|++.++++.-++....+ ....+++..+.|++-...++++||
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~---~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF---ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc---cccCCHHHHHHHHHHHHHHHHHhC
Confidence 34666789999999999999999876654322 012344455555555555556665
No 112
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=23.38 E-value=6.7e+02 Score=27.13 Aligned_cols=104 Identities=15% Similarity=0.216 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCeEEecc-ccc-ccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCe-EEEEecCCCCchhhhhhCC
Q 008982 90 DIELKLAKDTGVSVFRLGI-DWS-RIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMK-VMLTLFHHSLPAWAGEYGG 166 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI-~Ws-RI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~-PiVTL~HwDlP~wL~~~GG 166 (547)
++.+++|+++|++.+-+++ +-+ +++-.= | -..+. +-..+.++.+++.||. .-++|. +++|.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l---~--R~~~~---~~~~~ai~~l~~~G~~~v~~dlI-~GlPg------- 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALC---G--RSHRV---KDIFAAVDLIHQAGIENFSLDLI-SGLPH------- 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHh---C--CCCCH---HHHHHHHHHHHHcCCCeEEEEee-cCCCC-------
Confidence 7899999999999666665 221 111110 0 01122 2235688899999998 556665 67773
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchhhhccccCCcC
Q 008982 167 WKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVFCMLTYCAGTW 213 (547)
Q Consensus 167 W~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~~~~gY~~G~~ 213 (547)
++.+.+.+=.+.+.+-=-+.|......-||...-..-+..|.+
T Consensus 179 ----qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 ----QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred ----CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2344455544444443346677666666776543333444433
No 113
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.01 E-value=2.1e+02 Score=28.93 Aligned_cols=69 Identities=16% Similarity=0.345 Sum_probs=47.6
Q ss_pred ChHHHHHHHHhcCCCeEEe----------------------cccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcC
Q 008982 88 DPDIELKLAKDTGVSVFRL----------------------GIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYG 145 (547)
Q Consensus 88 ~~~eDl~l~k~lG~~~yRf----------------------sI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~G 145 (547)
.-+.=++||++||.++..| ++ | ++|.| .+| ++.+..++..|++.|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG-------GId---l~Nf~~I~~i~ldaG 202 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG-------GID---LDNFEEIVQIALDAG 202 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC-------Ccc---HHhHHHHHHHHHHcC
Confidence 3477899999999999875 23 3 57763 455 567789999999999
Q ss_pred CeEEEEecCCCCchh----hhhhCCCCChhhHHHH
Q 008982 146 MKVMLTLFHHSLPAW----AGEYGGWKLEKTIDYF 176 (547)
Q Consensus 146 I~PiVTL~HwDlP~w----L~~~GGW~n~~~v~~F 176 (547)
++-++ |.- +++.-|-+.++-+..+
T Consensus 203 v~kvi-------PHIYssiIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 203 VEKVI-------PHVYSSIIDKETGNTRVEDVKQL 230 (236)
T ss_pred CCeec-------cccceeccccccCCCCHHHHHHH
Confidence 98773 332 2334566666554433
No 114
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=22.97 E-value=28 Score=28.79 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=16.1
Q ss_pred cCCCCChH--HHHHHHHhcCC
Q 008982 83 LRFWSDPD--IELKLAKDTGV 101 (547)
Q Consensus 83 ~~~~~~~~--eDl~l~k~lG~ 101 (547)
.+||..|+ +|++.|++.|+
T Consensus 46 adFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 46 ADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHccChHHHHHHHHHcCC
Confidence 37888777 89999999996
No 115
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=22.81 E-value=2.6e+02 Score=28.58 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCC-CCchhhhhhCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHH-SLPAWAGEYGGWK 168 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~Hw-DlP~wL~~~GGW~ 168 (547)
+.+++.+.+.|++..|+.++=|-+.-... -|.--++.++-..+.|+.++++|+++.++.-+| | +.
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~----~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d--------~~-- 146 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEA----LGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFD--------GY-- 146 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHH----cCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccc--------cC--
Confidence 46899999999999999886554422110 122235678888899999999999998877666 2 11
Q ss_pred ChhhHHHHHHHHHHHHH
Q 008982 169 LEKTIDYFMDFTRLVVD 185 (547)
Q Consensus 169 n~~~v~~F~~YA~~vf~ 185 (547)
+...+.+.++++.+.+
T Consensus 147 -~~~~~~~~~~~~~~~~ 162 (273)
T cd07941 147 -KANPEYALATLKAAAE 162 (273)
T ss_pred -CCCHHHHHHHHHHHHh
Confidence 2235666777777654
No 116
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.40 E-value=2.6e+02 Score=30.13 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 169 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n 169 (547)
++|++.+.+.|++.++++++-|.+.-... -+.--.+.++-..+.|+.+++.|+++.+++- + ++
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~----~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e---------d-~~--- 140 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHK----LKKTREEVLERMVEAVEYAKDHGLYVSFSAE---------D-AS--- 140 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHCCCeEEEEec---------c-CC---
Confidence 78999999999999999998777633210 1222356788889999999999999888732 1 22
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 008982 170 EKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 170 ~~~v~~F~~YA~~vf~~fG 188 (547)
+...+...++++.+.+ .|
T Consensus 141 r~~~~~l~~~~~~~~~-~G 158 (378)
T PRK11858 141 RTDLDFLIEFAKAAEE-AG 158 (378)
T ss_pred CCCHHHHHHHHHHHHh-CC
Confidence 2235666777776543 45
No 117
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.91 E-value=2.9e+02 Score=28.87 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=63.4
Q ss_pred HHHHHHHhcCC--CeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCC---CCchhh--hh
Q 008982 91 IELKLAKDTGV--SVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHH---SLPAWA--GE 163 (547)
Q Consensus 91 eDl~l~k~lG~--~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~Hw---DlP~wL--~~ 163 (547)
+-++.+++.|+ +++=+++.|.........-| .=++|.+-.---+.+|++|.++||+.++.+.-+ +.|..- .+
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~-~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 28 DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG-NLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHhCCCceEEEEechhhcCcccCCcee-eeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 44455565554 55666666744322100000 012332222223679999999999999988755 334321 11
Q ss_pred h---------------------C---CCCChhhHHHHHHHHHHHHHHhCCcceeEEEecCcchh
Q 008982 164 Y---------------------G---GWKLEKTIDYFMDFTRLVVDSVSDIVDYWVTFNEPHVF 203 (547)
Q Consensus 164 ~---------------------G---GW~n~~~v~~F~~YA~~vf~~fGDrVk~WiT~NEP~~~ 203 (547)
. + .|+||+..++|.+..+.+ ...|- --+|+=+|||.++
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~Gv-dg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQGV-TGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCCc-cEEEecCCCcccc
Confidence 0 1 256999999998877765 44442 2468899999654
No 118
>PRK10785 maltodextrin glucosidase; Provisional
Probab=21.87 E-value=1.8e+02 Score=33.51 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCeEEecccc-------------cccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 008982 91 IELKLAKDTGVSVFRLGIDW-------------SRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF 153 (547)
Q Consensus 91 eDl~l~k~lG~~~yRfsI~W-------------sRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~ 153 (547)
+-|+-|++|||++.=++=-. -+|-|. -| ..+=+++||++|.++||++|+.+.
T Consensus 183 ~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~------~G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 183 EKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQ------LG-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcc------cC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 66799999999998876422 223332 11 123468999999999999999754
No 119
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=21.82 E-value=2.8e+02 Score=28.73 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEe
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTL 152 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL 152 (547)
.+|++.+.+.|++..-+.++=|..+-... -+.=-++.++.+.++|..++++|+++-+++
T Consensus 77 ~~die~A~~~g~~~v~i~~s~S~~~~~~~----~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 77 KEDLKLVKEMGLKETGILMSVSDYHIFKK----LKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHH----hCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 79999999999999998887766544320 123346789999999999999999999888
No 120
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=21.49 E-value=3.3e+02 Score=31.34 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCchhhhhhCCCCC
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHSLPAWAGEYGGWKL 169 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwDlP~wL~~~GGW~n 169 (547)
++|++.+.+.|++.+|+..+.+.+ +--...|+.++++|+...+++.+-+.|.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~------------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~---------- 145 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP------------------RNLQAAIQAAKKHGAHAQGTISYTTSPV---------- 145 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH------------------HHHHHHHHHHHHcCCEEEEEEEeccCCC----------
Confidence 456899999999999999876543 1135678899999999999987665551
Q ss_pred hhhHHHHHHHHHHHHH
Q 008982 170 EKTIDYFMDFTRLVVD 185 (547)
Q Consensus 170 ~~~v~~F~~YA~~vf~ 185 (547)
...+++.+.++.+.+
T Consensus 146 -~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 146 -HTLETYLDLAEELLE 160 (582)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 356778888877654
No 121
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=21.32 E-value=1.2e+02 Score=31.10 Aligned_cols=24 Identities=42% Similarity=0.829 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeecCCCC
Q 008982 338 GLFRVLHQFHERYKHLNLPFIITENGVSD 366 (547)
Q Consensus 338 GL~~~L~~i~~rY~~~~~PI~ITENG~~~ 366 (547)
||..++.. .+| +.|++|||.|+-.
T Consensus 185 gl~g~~~k--~~~---g~P~lLTEHGIY~ 208 (268)
T PF11997_consen 185 GLLGALAK--YRY---GRPFLLTEHGIYT 208 (268)
T ss_pred HHHHHHHH--HHh---CCCEEEecCCccH
Confidence 56555543 356 4899999999953
No 122
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=21.14 E-value=3.4e+02 Score=28.20 Aligned_cols=98 Identities=9% Similarity=0.190 Sum_probs=61.1
Q ss_pred CCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEecCCC------C-
Q 008982 85 FWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFHHS------L- 157 (547)
Q Consensus 85 ~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~HwD------l- 157 (547)
-+.++++-|+.++++|+..+=+.--|+.-.+... ...........+ .+||+..++.|+.+++-.+|-+ +
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~-~d~~~~~~~~dl---~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~ 105 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDD-FDFTKPIPDFDL---PELVDYAKEKGVGIWLWYHSETGGNVANLE 105 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT---TT-B-TT--H---HHHHHHHHHTT-EEEEEEECCHTTBHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccccccc-ccccccCCccCH---HHHHHHHHHcCCCEEEEEeCCcchhhHhHH
Confidence 4567899999999999999999999986322110 000111222223 6899999999999999998865 1
Q ss_pred ---chhh---hhhC------CC---CChhhHHHHHHHHHHHHHH
Q 008982 158 ---PAWA---GEYG------GW---KLEKTIDYFMDFTRLVVDS 186 (547)
Q Consensus 158 ---P~wL---~~~G------GW---~n~~~v~~F~~YA~~vf~~ 186 (547)
-.+| ++.| || .+.++++++.+-++.++++
T Consensus 106 ~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 106 KQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp CCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 1112 1212 23 3566888888888887753
No 123
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=21.07 E-value=1.6e+02 Score=32.73 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=43.9
Q ss_pred CCCCChHHHHHHHHhcCCCeEEecccccccCC---CC--CCCCC-------cCcCCHH--HHHHHHHHHHHHHHcCCeEE
Q 008982 84 RFWSDPDIELKLAKDTGVSVFRLGIDWSRIMP---AE--PVNGL-------KETVNFA--ALERYKWIINRVRSYGMKVM 149 (547)
Q Consensus 84 ~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P---~~--~~~G~-------~g~vN~~--gl~~Y~~lId~L~~~GI~Pi 149 (547)
+.|....+-++-|++||+++.=++-...-.-. .+ +.+-. .|.||.. ..+=.++||++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 34444567899999999999988765433210 00 00000 0112211 23346899999999999999
Q ss_pred EEe--cCC
Q 008982 150 LTL--FHH 155 (547)
Q Consensus 150 VTL--~Hw 155 (547)
+.+ .|-
T Consensus 99 ~D~V~NH~ 106 (479)
T PRK09441 99 ADVVLNHK 106 (479)
T ss_pred EEECcccc
Confidence 985 464
No 124
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=20.99 E-value=5.4e+02 Score=27.74 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=68.3
Q ss_pred cccccceeccC-CCccccCCCCChHHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcC
Q 008982 67 HHKVTAWHNVP-HPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYG 145 (547)
Q Consensus 67 ~~~~~~~~~~~-~~~~~~~~~~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~G 145 (547)
.++......++ -|-.|.=||+ |+--+..+ +.|++.+|+. | |+-|. -+....+++.++++|
T Consensus 61 A~al~~I~~~~~iPlVADIHFd-~~lAl~a~-~~g~dkiRIN-------P-----GNig~-----~e~v~~vv~~ak~~~ 121 (346)
T TIGR00612 61 AAAFEAIKEGTNVPLVADIHFD-YRLAALAM-AKGVAKVRIN-------P-----GNIGF-----RERVRDVVEKARDHG 121 (346)
T ss_pred HHhHHHHHhCCCCCEEEeeCCC-cHHHHHHH-HhccCeEEEC-------C-----CCCCC-----HHHHHHHHHHHHHCC
Confidence 33444444443 3778877886 56655555 5699999863 5 22222 356689999999999
Q ss_pred CeEEEEecCCCCchhhh-hhCCCCChhhHHHHHHHHHHH
Q 008982 146 MKVMLTLFHHSLPAWAG-EYGGWKLEKTIDYFMDFTRLV 183 (547)
Q Consensus 146 I~PiVTL~HwDlP~wL~-~~GGW~n~~~v~~F~~YA~~v 183 (547)
+-.=+..+|=.|+..+. +||+=+.+.+++-=.++++.|
T Consensus 122 ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 122 KAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred CCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999874 566544455777777777765
No 125
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=20.69 E-value=1.8e+02 Score=32.96 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=39.2
Q ss_pred CChHHHHHHHHhcCCCeEEecccccccCCC-CCCCCCcCcCCH--HHHHHHHHHHHHHHHcCCeEEEEec
Q 008982 87 SDPDIELKLAKDTGVSVFRLGIDWSRIMPA-EPVNGLKETVNF--AALERYKWIINRVRSYGMKVMLTLF 153 (547)
Q Consensus 87 ~~~~eDl~l~k~lG~~~yRfsI~WsRI~P~-~~~~G~~g~vN~--~gl~~Y~~lId~L~~~GI~PiVTL~ 153 (547)
.-..+-++-+++||+++.=++--...-.-. +--...--.+|+ -..+=.+.||++|.++||++|+.+.
T Consensus 27 ~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 27 RGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred HHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 334577899999999998765433221000 000000001111 1234468999999999999999864
No 126
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=20.59 E-value=6.6e+02 Score=27.46 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCeEEecccccccCCCCCCCCCcCc--CC----HHHHHHHHHHHHHHHHcCCeEEEEe----------c
Q 008982 90 DIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKET--VN----FAALERYKWIINRVRSYGMKVMLTL----------F 153 (547)
Q Consensus 90 ~eDl~l~k~lG~~~yRfsI~WsRI~P~~~~~G~~g~--vN----~~gl~~Y~~lId~L~~~GI~PiVTL----------~ 153 (547)
.+.++.++++|++.|=+.=-|..---.. ..+ .|. +| +.|+ ..+++.+.+.||++=+=+ .
T Consensus 61 ~~~a~~~~~~G~e~fviDDGW~~~r~~d-~~~-~GdW~~~~~kFP~Gl---~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l 135 (394)
T PF02065_consen 61 LELADAAAELGYEYFVIDDGWFGGRDDD-NAG-LGDWEPDPKKFPNGL---KPLADYIHSLGMKFGLWFEPEMVSPDSDL 135 (394)
T ss_dssp HHHHHHHHHHT-SEEEE-SSSBCTESTT-TST-TSBECBBTTTSTTHH---HHHHHHHHHTT-EEEEEEETTEEESSSCH
T ss_pred HHHHHHHHHhCCEEEEEcCccccccCCC-ccc-CCceeEChhhhCCcH---HHHHHHHHHCCCeEEEEeccccccchhHH
Confidence 4667889999999999888996431110 000 011 22 2355 679999999999986533 0
Q ss_pred CCCCchhhhhhC------C-------CCChhhHHHHHHHHHHHHHHhC
Q 008982 154 HHSLPAWAGEYG------G-------WKLEKTIDYFMDFTRLVVDSVS 188 (547)
Q Consensus 154 HwDlP~wL~~~G------G-------W~n~~~v~~F~~YA~~vf~~fG 188 (547)
.-..|.|+-..+ | ..+|++.++..+-...+++.+|
T Consensus 136 ~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 136 YREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp CCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 124688863211 1 3478899999998888888888
No 127
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=20.52 E-value=3.1e+02 Score=25.25 Aligned_cols=51 Identities=12% Similarity=0.246 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCchh--hhhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 008982 134 YKWIINRVRSYGMKVMLTLFHHSLPAW--AGEYGGWKLEKTIDYFMDFTRLVVDSVSD 189 (547)
Q Consensus 134 Y~~lId~L~~~GI~PiVTL~HwDlP~w--L~~~GGW~n~~~v~~F~~YA~~vf~~fGD 189 (547)
+.-+++.|++.||+|++-+ .|.- ..++-|. +++..+.|.+=.+..+++.|=
T Consensus 38 l~l~L~~~k~~g~~~lfVi----~PvNg~wydytG~-~~~~r~~~y~kI~~~~~~~gf 90 (130)
T PF04914_consen 38 LQLLLDVCKELGIDVLFVI----QPVNGKWYDYTGL-SKEMRQEYYKKIKYQLKSQGF 90 (130)
T ss_dssp HHHHHHHHHHTT-EEEEEE--------HHHHHHTT---HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHcCCceEEEe----cCCcHHHHHHhCC-CHHHHHHHHHHHHHHHHHCCC
Confidence 3679999999999999998 4652 3456774 677778888888888888884
No 128
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=20.49 E-value=2.9e+02 Score=28.92 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCC-----chhhh--h--------h----------C-----CCCChhhHHHHHHHHHHH
Q 008982 134 YKWIINRVRSYGMKVMLTLFHHSL-----PAWAG--E--------Y----------G-----GWKLEKTIDYFMDFTRLV 183 (547)
Q Consensus 134 Y~~lId~L~~~GI~PiVTL~HwDl-----P~wL~--~--------~----------G-----GW~n~~~v~~F~~YA~~v 183 (547)
-..+|++|.++|++.++.+.-+-. |...+ + . | .|.||+..++|.+..+.+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 357999999999998876653321 22110 0 0 1 367999999999988887
Q ss_pred HHHhCCcceeEEEecCcchh
Q 008982 184 VDSVSDIVDYWVTFNEPHVF 203 (547)
Q Consensus 184 f~~fGDrVk~WiT~NEP~~~ 203 (547)
+...|- .-+|+=+|||..+
T Consensus 146 ~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 146 LNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred hhcCCC-ceEEeeCCCCccH
Confidence 766663 3578999999654
No 129
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=20.30 E-value=3.7e+02 Score=32.16 Aligned_cols=104 Identities=20% Similarity=0.367 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCC--eEEecccccccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeEEEEec---CCCCc-------
Q 008982 91 IELKLAKDTGVS--VFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLF---HHSLP------- 158 (547)
Q Consensus 91 eDl~l~k~lG~~--~yRfsI~WsRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~PiVTL~---HwDlP------- 158 (547)
+-++.++++|+. ..=..|+|-.-..+ =++|..+--.-.++++.|.++|++-++++. +=|..
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~ykD-------FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g 387 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYKD-------FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRG 387 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhcccc-------eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhh
Confidence 555777778777 66666666433333 245655555568899999999999999887 33332
Q ss_pred --------------hhhhh-hCC------CCChhhHHHHHHHHHHHHHHhCCcce---eEEEecCcchhhh
Q 008982 159 --------------AWAGE-YGG------WKLEKTIDYFMDFTRLVVDSVSDIVD---YWVTFNEPHVFCM 205 (547)
Q Consensus 159 --------------~wL~~-~GG------W~n~~~v~~F~~YA~~vf~~fGDrVk---~WiT~NEP~~~~~ 205 (547)
..+-+ .-| ++|++++.++.+ .+++|-+.|. +|+-.|||..++.
T Consensus 388 ~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~----~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 388 VAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLD----ELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred hhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHH----HHHhhcccCCccceEEECCCcccCCC
Confidence 00101 123 778888877765 4447777775 7999999987664
No 130
>PRK03705 glycogen debranching enzyme; Provisional
Probab=20.07 E-value=2.2e+02 Score=33.34 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=36.6
Q ss_pred HHHHHhcCCCeEEecccc------------------------cccCCCCCCCCCcCcCCHHHHHHHHHHHHHHHHcCCeE
Q 008982 93 LKLAKDTGVSVFRLGIDW------------------------SRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKV 148 (547)
Q Consensus 93 l~l~k~lG~~~yRfsI~W------------------------sRI~P~~~~~G~~g~vN~~gl~~Y~~lId~L~~~GI~P 148 (547)
|+-||+|||+++=+.=-- -.+.|. .|.-....++=+++||++|.++||++
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~------ygt~~~~~~~efk~LV~~~H~~GI~V 258 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPA------YASGPETALDEFRDAVKALHKAGIEV 258 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccc------cCCCCcchHHHHHHHHHHHHHCCCEE
Confidence 889999999998764311 122221 12211123455799999999999999
Q ss_pred EEEec
Q 008982 149 MLTLF 153 (547)
Q Consensus 149 iVTL~ 153 (547)
|+.+.
T Consensus 259 IlDvV 263 (658)
T PRK03705 259 ILDVV 263 (658)
T ss_pred EEEEc
Confidence 99754
Done!