Query 008986
Match_columns 547
No_of_seqs 136 out of 188
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 19:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4176 Uncharacterized conser 100.0 1.5E-53 3.2E-58 435.7 18.4 307 71-428 7-315 (323)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 1.4E-32 3E-37 255.8 11.3 181 222-415 1-194 (194)
3 PRK15401 alpha-ketoglutarate-d 99.9 1.8E-25 3.8E-30 218.5 17.3 181 217-417 14-213 (213)
4 KOG3200 Uncharacterized conser 99.9 6.2E-22 1.3E-26 188.6 10.8 180 212-418 3-215 (224)
5 TIGR00568 alkb DNA alkylation 99.9 3E-21 6.5E-26 182.7 14.0 161 227-402 2-169 (169)
6 KOG3959 2-Oxoglutarate- and ir 99.8 3.1E-22 6.7E-27 197.6 3.5 179 219-423 70-283 (306)
7 COG3145 AlkB Alkylated DNA rep 99.8 2.2E-19 4.8E-24 173.6 11.5 174 216-412 10-194 (194)
8 PRK05467 Fe(II)-dependent oxyg 97.9 0.00013 2.7E-09 73.0 12.5 158 223-414 2-174 (226)
9 smart00702 P4Hc Prolyl 4-hydro 97.6 0.0025 5.3E-08 59.6 15.7 164 221-414 1-175 (178)
10 PF03171 2OG-FeII_Oxy: 2OG-Fe( 97.3 0.00017 3.6E-09 61.0 3.2 82 323-416 1-96 (98)
11 PF13640 2OG-FeII_Oxy_3: 2OG-F 96.2 0.0041 9E-08 52.6 3.2 86 326-414 1-97 (100)
12 PLN00052 prolyl 4-hydroxylase; 95.9 0.4 8.7E-06 50.4 16.7 169 216-413 49-247 (310)
13 TIGR01762 chlorin-enz chlorina 95.2 0.34 7.4E-06 50.0 13.0 40 378-421 209-251 (288)
14 COG3128 PiuC Uncharacterized i 94.6 0.3 6.4E-06 48.8 10.2 156 224-415 5-178 (229)
15 TIGR02408 ectoine_ThpD ectoine 91.2 9.8 0.00021 38.8 15.8 28 220-247 27-54 (277)
16 PF05721 PhyH: Phytanoyl-CoA d 90.0 2.6 5.5E-05 38.5 9.5 25 221-245 4-28 (211)
17 KOG2731 DNA alkylation damage 89.4 0.46 9.9E-06 51.1 4.6 101 297-404 189-293 (378)
18 PF12933 FTO_NTD: FTO catalyti 86.8 3.3 7.2E-05 42.7 8.7 89 320-415 135-249 (253)
19 KOG1591 Prolyl 4-hydroxylase a 85.9 9.8 0.00021 40.0 11.8 178 205-413 81-279 (289)
20 PF09859 Oxygenase-NA: Oxygena 80.2 8.3 0.00018 37.9 8.0 113 296-413 39-167 (173)
21 PF12851 Tet_JBP: Oxygenase do 60.3 13 0.00028 35.9 4.4 36 377-415 127-168 (171)
22 PLN03002 oxidoreductase, 2OG-F 46.3 53 0.0012 34.6 6.6 100 325-429 183-294 (332)
23 TIGR02466 conserved hypothetic 45.3 2.1E+02 0.0046 28.5 10.3 86 322-414 94-196 (201)
24 PF08659 KR: KR domain; Inter 40.5 23 0.0005 33.4 2.6 20 45-64 148-167 (181)
25 PF13759 2OG-FeII_Oxy_5: Putat 36.4 1.5E+02 0.0032 25.5 6.8 82 326-414 2-100 (101)
26 COG3826 Uncharacterized protei 34.5 1.8E+02 0.0038 29.7 7.7 105 296-407 101-222 (236)
27 PLN02947 oxidoreductase 33.9 1.3E+02 0.0028 32.5 7.4 86 324-417 225-321 (374)
28 PF02960 K1: K1 glycoprotein; 30.9 49 0.0011 30.9 3.0 47 46-103 73-119 (130)
29 PLN02276 gibberellin 20-oxidas 24.4 1.6E+02 0.0034 31.6 5.9 96 324-428 206-312 (361)
30 PRK07006 isocitrate dehydrogen 23.3 28 0.00061 38.4 0.1 37 49-106 271-309 (409)
31 PLN02704 flavonol synthase 21.9 1.8E+02 0.0038 30.8 5.7 94 326-428 201-305 (335)
32 KOG1924 RhoA GTPase effector D 21.9 1.7E+02 0.0037 35.4 5.9 21 76-96 158-180 (1102)
33 PLN02984 oxidoreductase, 2OG-F 21.2 2.8E+02 0.006 29.7 6.9 85 324-416 200-296 (341)
No 1
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-53 Score=435.69 Aligned_cols=307 Identities=40% Similarity=0.659 Sum_probs=268.4
Q ss_pred CchhHHHHHHHhhcccchhhhhhhhcccHHHHHHHHHHhHHHhhhcccccCCccchhhhhhccCCCcccCCCccchhhhc
Q 008986 71 SGYEKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNVTEKMVEEKKDDGEKKVDELKECLDSEKSTENGEKMTESEKK 150 (547)
Q Consensus 71 ~eyd~V~~ai~qRR~nW~~VlhMQqy~sv~dV~~~Lqqv~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 150 (547)
-||+.|...|||||+||.+++.||.+.+.+.|+.++|.++-+.++..-.
T Consensus 7 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~------------------------------- 55 (323)
T KOG4176|consen 7 YEYAKVAKKIHRRRLNSSDVLVQSSRESTSYLAVANQGLAAGLAEAALL------------------------------- 55 (323)
T ss_pred ccHHHHHHHHHhhhcccCCcceecccCCcHHHHhhccchhhhhhhhhhh-------------------------------
Confidence 7899999999999999999999999999999999999999887543311
Q ss_pred hhhcccccccccCCCCCCCCCCCCccccccccccccccchhhhccc-ccccccccceeeEeeecCeecccCCCeeEeccc
Q 008986 151 CEVEEETAVEEDDSPNSDITDSGSQEMQPITENVEICSNHEECDAR-RSQIKLTKGFAAKEQVKGHMVNVVKGLKLYEDV 229 (547)
Q Consensus 151 ~~~~~~~~~~~~~~~~s~~~~~g~~~~~~~~~~~~~~s~~e~~~~~-~~~v~~~k~f~~~E~v~G~~vNvv~GLkL~edf 229 (547)
.+.+++..++.++.+++.+.. ...+|+..+++..+ ....+..|+|.+.|..+++.+|.++|++++.+.
T Consensus 56 -------~~~~~~~~~~~~~~~~s~~~~----~~~~~~e~~~~~~~~~~~~~~i~~f~~~e~~~~~~~n~~~~~~l~~~~ 124 (323)
T KOG4176|consen 56 -------VDAEDGEVDSGIMSPGSEDSL----FRELYSEESRLRYRTDANLKAIKGFGEQEQLKGQSVNVVEGLKLRDEV 124 (323)
T ss_pred -------ccccccccccccccCCcccch----hhhhchhhhhhhhhhhccccccccccceeeccchhhhhhhhheeeccc
Confidence 011123334445555544211 11234444556666 357899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcccccccccceeeeccccccCCCceeEEeecccccccccccccCCCCCCCCCChHHHHHHHH
Q 008986 230 FTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIPALLQSVID 309 (547)
Q Consensus 230 ~s~~Ee~kLl~~Idel~~~Grrg~l~G~Tv~~~rk~mKG~kRrviqfGy~y~y~~~~~~~~sg~~~~vePIP~~L~~Lid 309 (547)
|++.|...|.+++.+++++|..+.+.+++++. |++|++|+++||||+|+|.++..++.. .++|||..++.||+
T Consensus 125 ~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~~---~~~gk~R~~iq~G~~f~y~~~~~d~~~----~~~piPs~~~~ii~ 197 (323)
T KOG4176|consen 125 FIPGELSLIVDFVTELEEKGLIGALVDETFTY---QESGKHREVIQLGYPFDYRTNNVDESK----PVDPIPSLFKSIID 197 (323)
T ss_pred cChhhceehhhhhhhhHHhhhhccccccccee---eccccceeeeecCceeccCCCcccccC----ccCCCchHHHHHHH
Confidence 99999999999999999999999999988876 888999999999999999997766432 39999999999999
Q ss_pred HHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCCCCCCceEEE-EccccccccccccccCCCCCcceeEEEEecCCeEE
Q 008986 310 HLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQPISTL-LLSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLV 388 (547)
Q Consensus 310 RLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpPHfD~PIvtL-LLSec~M~FGr~~~~~~~Ge~~g~l~L~Lp~GSLL 388 (547)
||++|.+||+ +|||||||+|+||+||+||++.++|++||+++ |||+|+|.|||.+..+..++++|.++++|..||+|
T Consensus 198 rlv~~~~ip~--~pd~~~iN~Ye~G~~i~ph~~~~~F~~Pi~slS~lSe~~m~Fg~~~~~~~~~~~~g~~s~p~~~g~~l 275 (323)
T KOG4176|consen 198 RLVSWRVIPE--RPDQCTINFYEPGDGIPPHIDHSAFLDPISSLSFLSECTMEFGHGLLSDNIGNFRGSLSLPLRYGSVL 275 (323)
T ss_pred HhhhhccCCC--CCCeeEEEeeCCCCCCCCCCChHHhcCceEEEEeecceeEEecccccccCccccccccccccccCeEE
Confidence 9999999997 89999999999999999999888999999999 99999999999999999999999999999999999
Q ss_pred EEecCcccccceecCCCCCceEEEEEEeecCCCCCCCCCC
Q 008986 389 VMRGNSADTARHVMCPSPNKRISITFFRVRPESNQSQSPP 428 (547)
Q Consensus 389 VMsG~SRd~WkHaIPpvr~rRISITFRkvrp~~~~~~~p~ 428 (547)
||.|+++|+.+||+++.+++||||||||++++.+.+..|.
T Consensus 276 vi~~~~ad~~~~~~~~~~~kRisitfrki~~~~~~~~~~~ 315 (323)
T KOG4176|consen 276 VIRGRSADVAPHCIRPSRNKRISITFRKIRPDPCFCEPPP 315 (323)
T ss_pred EeCCCcccccccccCCCCCceEEEEEEEeccCCCCCCCCC
Confidence 9999999999999999999999999999999999877554
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.98 E-value=1.4e-32 Score=255.84 Aligned_cols=181 Identities=25% Similarity=0.334 Sum_probs=124.6
Q ss_pred CeeEecccCCHHHHHHHHHHHHHHHHcccccccccceeeeccccccCCCceeEEeecccccccccccccCCCCCCCCCCh
Q 008986 222 GLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIP 301 (547)
Q Consensus 222 GLkL~edf~s~~Ee~kLl~~Idel~~~Grrg~l~G~Tv~~~rk~mKG~kRrviqfGy~y~y~~~~~~~~sg~~~~vePIP 301 (547)
||.|++|||+.+|+.+|++.+.+.....+.....++++...+++.++..+ ...|+.|.|...... ......|+|
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~y~~~~~~----~~~~~~~~p 74 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYPMGKVYSLPRKLCGGLSW--VGDGPSYRYSGKRPV----RSKPWPPFP 74 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCCCCECCECCE-SSEEEE--EECT--CCCTCC-EE----CCCEBSCCH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcCCCEEccceecceeeEE--ECCCCCeEcCCcccc----CCCCCCCcc
Confidence 89999999999999999999975432223333346666655554443222 223455666543111 233688999
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCCCC--CCceEEE-EccccccccccccccCCCCCcceeE
Q 008986 302 ALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHL--DQPISTL-LLSDSAMAFGRSLVCDNDGNYKGQL 378 (547)
Q Consensus 302 ~~L~~LidRLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpPHf--D~PIvtL-LLSec~M~FGr~~~~~~~Ge~~g~l 378 (547)
++|..+++++.+...+.....||+|+||+|.+|++|++|.|..++ +.||++| |++.|+|.|+... +.+..+
T Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~------~~~~~~ 148 (194)
T PF13532_consen 75 EWLSRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKS------DDDEPI 148 (194)
T ss_dssp HHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC-CCSEEEEEEEES-EEEEEEECG------GTS-EE
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccccCCCcEEEEEEccCceEEEeecc------CCCccE
Confidence 999999999998765333359999999999999999999998865 8899999 7799999998632 223579
Q ss_pred EEEecCCeEEEEecCcccccceecCCCCC----------ceEEEEEE
Q 008986 379 MLSLKEGSLVVMRGNSADTARHVMCPSPN----------KRISITFF 415 (547)
Q Consensus 379 ~L~Lp~GSLLVMsG~SRd~WkHaIPpvr~----------rRISITFR 415 (547)
++.|++||||||.|++|+.| |+|++... +|||||||
T Consensus 149 ~~~L~~gsl~vm~g~~r~~~-H~I~~~~~~~~~~~~~~~~RislTfR 194 (194)
T PF13532_consen 149 EVPLPPGSLLVMSGEARYDW-HGIPPVKKDTHPSHYVRGRRISLTFR 194 (194)
T ss_dssp EEEE-TTEEEEEETTHHHHE-EEE-S-SCEEEESTEE-S-EEEEEEE
T ss_pred EEEcCCCCEEEeChHHhhhe-eEcccccCCccccccCCCCEEEEEeC
Confidence 99999999999999999999 99999876 89999999
No 3
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=99.93 E-value=1.8e-25 Score=218.45 Aligned_cols=181 Identities=17% Similarity=0.179 Sum_probs=129.2
Q ss_pred cccCCCeeEecccCCHHHHHHHHHHHHHHHHcc--cccccccceeeecccc------ccCCCceeEEeeccccccccccc
Q 008986 217 VNVVKGLKLYEDVFTDSELSMLTDYVNELRLAG--QSGELSGETFILFNKQ------MKGNRRELIRFGIPIFRHIKEEA 288 (547)
Q Consensus 217 vNvv~GLkL~edf~s~~Ee~kLl~~Idel~~~G--rrg~l~G~Tv~~~rk~------mKG~kRrviqfGy~y~y~~~~~~ 288 (547)
..+.+|..++++| +.+|+++|++.|.++.... ++....|...-.++.. |.+++ -||.|. ..+..
T Consensus 14 ~~~~~g~~~~~~~-~~~~~~~l~~~~~~~~~~~p~~~~~~~gg~~msv~mt~~G~~~W~~d~-----~~YrYs--~~~~~ 85 (213)
T PRK15401 14 EPLAPGAVLLRGF-ALAAAEALLAAIEAVAAQAPFRHMVTPGGYTMSVAMTNCGALGWVTDR-----RGYRYS--PIDPL 85 (213)
T ss_pred eecCCCcEEeCCC-CHHHHHHHHHHHHHHHhcCCccceecCCCCcceeEEeccccceEecCC-----CCcccC--CcCCC
Confidence 4468999999999 5999999999997642111 2233333222222221 22221 144443 32211
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCC--CCCCceEEE-Eccccccccccc
Q 008986 289 TSNNEIGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPP--HLDQPISTL-LLSDSAMAFGRS 365 (547)
Q Consensus 289 ~~sg~~~~vePIP~~L~~LidRLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpP--HfD~PIvtL-LLSec~M~FGr~ 365 (547)
....-.+||++|..|.+++......+. -.||+||||+|.+|++++||+|.. .++.||++| |+.+|+|.||+.
T Consensus 86 ----~~~pwp~~P~~l~~L~~~~~~~~~~~~-~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~ 160 (213)
T PRK15401 86 ----TGKPWPAMPASFLALAQRAAAAAGFPG-FQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGL 160 (213)
T ss_pred ----CCCCCCCchHHHHHHHHHHHHHcCCCC-CCCCEEEEEeccCcCccccccCCCcccCCCCEEEEeCCCCeEEEeccc
Confidence 112466788899999999987755544 389999999999999999999853 377899999 679999999964
Q ss_pred cccCCCCCcceeEEEEecCCeEEEEecCcccccceecCCCCC--------ceEEEEEEee
Q 008986 366 LVCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCPSPN--------KRISITFFRV 417 (547)
Q Consensus 366 ~~~~~~Ge~~g~l~L~Lp~GSLLVMsG~SRd~WkHaIPpvr~--------rRISITFRkv 417 (547)
. +++ ...+|.|+.||||||.|++|+ |.|+||+++. .|||||||++
T Consensus 161 ~----~~~--~~~~l~L~~Gdllvm~G~sr~-~~HgVp~~~~~~~p~~g~~RINLTFR~~ 213 (213)
T PRK15401 161 K----RSD--PLQRILLEHGDVVVWGGPSRL-RYHGILPLKAGEHPLTGECRINLTFRKA 213 (213)
T ss_pred C----CCC--ceEEEEeCCCCEEEECchHhh-eeccCCcCCCCcCCCCCCCeEEEEeEcC
Confidence 2 222 258999999999999999987 5599999763 7999999985
No 4
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=6.2e-22 Score=188.62 Aligned_cols=180 Identities=18% Similarity=0.235 Sum_probs=140.1
Q ss_pred ecCeecccCCCeeEecccCCHHHHHHHHHHHHHHHHcccccccccceeeeccccccCCCceeEEeecccccccccccccC
Q 008986 212 VKGHMVNVVKGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSN 291 (547)
Q Consensus 212 v~G~~vNvv~GLkL~edf~s~~Ee~kLl~~Idel~~~Grrg~l~G~Tv~~~rk~mKG~kRrviqfGy~y~y~~~~~~~~s 291 (547)
+++-.|-.-+-..|+++||+++|+..++++|.... ..||-.-++||.+.|| +-..+..
T Consensus 3 ~~~F~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap---------------~pkW~~L~NRRLqNyG-----Gvvh~~g-- 60 (224)
T KOG3200|consen 3 IKKFIVKSAPTMIYIPNFITEEEENLYLSHIENAP---------------QPKWRVLANRRLQNYG-----GVVHKTG-- 60 (224)
T ss_pred cceeEecccceEEEcCCccChHHHHHHHHHHhcCC---------------CchhHHHHhhhhhhcC-----CccccCC--
Confidence 34445656667799999999999999999996432 1244222258999998 3333222
Q ss_pred CCCCCCCCChHHHHHHHHHHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCCCCCCceEEE-EccccccccccccccCC
Q 008986 292 NEIGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQPISTL-LLSDSAMAFGRSLVCDN 370 (547)
Q Consensus 292 g~~~~vePIP~~L~~LidRLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpPHfD~PIvtL-LLSec~M~FGr~~~~~~ 370 (547)
..++.||+||+.+.+++-..|+++. ..|.++||+|.|||||+||.|-|-|-.-+.+| ++|.|+|+|-....-+.
T Consensus 61 ---lipeelP~wLq~~v~kinnlglF~s--~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~e~ 135 (224)
T KOG3200|consen 61 ---LIPEELPPWLQYYVDKINNLGLFKS--PANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQEV 135 (224)
T ss_pred ---cCccccCHHHHHHHHHhhcccccCC--CcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEeccccccccc
Confidence 2569999999999999999999986 89999999999999999999999985444566 67999999987543321
Q ss_pred C-C------CcceeEEEEecCCeEEEEecCcccccceecCC-------------------------CCCceEEEEEEeec
Q 008986 371 D-G------NYKGQLMLSLKEGSLVVMRGNSADTARHVMCP-------------------------SPNKRISITFFRVR 418 (547)
Q Consensus 371 ~-G------e~~g~l~L~Lp~GSLLVMsG~SRd~WkHaIPp-------------------------vr~rRISITFRkvr 418 (547)
. + ..+..+++.|.++||||++|++-..+.|+|.. +++.|||||.|.|-
T Consensus 136 ~d~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~s~k~Gd~lvr~tRvSLTiR~VP 215 (224)
T KOG3200|consen 136 NDGTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACSSRKDGDKLVRQTRVSLTIRLVP 215 (224)
T ss_pred CCccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhccccCCcceeeecceeEEEEecch
Confidence 1 1 12224899999999999999999999999954 25799999999863
No 5
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.86 E-value=3e-21 Score=182.68 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=121.7
Q ss_pred cccCCHHHHHHHHHHHHHHH----HcccccccccceeeeccccccCCCceeEEeecccccccccccccCCCCCCCCCChH
Q 008986 227 EDVFTDSELSMLTDYVNELR----LAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIPA 302 (547)
Q Consensus 227 edf~s~~Ee~kLl~~Idel~----~~Grrg~l~G~Tv~~~rk~mKG~kRrviqfGy~y~y~~~~~~~~sg~~~~vePIP~ 302 (547)
.+++..+++..|++.|.+.. |+. ....+|+++.+++...+- .+=+--||.|+|..+.-.. .....+||+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~w~~-~~~~~gk~~~~pr~~~~~--l~W~~~g~~Y~ys~~~~~~----~~~~p~~P~ 74 (169)
T TIGR00568 2 KRYFAFNAQEQLIRDINDVASQDPFRQ-YVTPGGYTMSVAMTNLGK--LGWTTHGQGYLYSPKDPQT----NKPWPAMPQ 74 (169)
T ss_pred CCccChHHHHHHHHHHHHHhhcCCCcC-eEecCCeEeeehhhhccc--ceEEcCCCcccCCCcccCC----CCCCCCCCH
Confidence 57889999999999886654 443 356679998888875321 1112237788887764221 113446999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCCCCC--CceEEE-EccccccccccccccCCCCCcceeEE
Q 008986 303 LLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLD--QPISTL-LLSDSAMAFGRSLVCDNDGNYKGQLM 379 (547)
Q Consensus 303 ~L~~LidRLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpPHfD--~PIvtL-LLSec~M~FGr~~~~~~~Ge~~g~l~ 379 (547)
+|..|++++.+...++. ..||+||||+|.+|++++||+|.+.++ .||++| |++.|+|.||+.. .. ..+.+
T Consensus 75 ~L~~L~~~v~~~~g~~~-~~~n~~LvN~Y~~Gd~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~----~~--~~~~~ 147 (169)
T TIGR00568 75 DLGDLCERVATAAGFPD-FQPDACLVNRYAPGATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLK----RN--DPPKR 147 (169)
T ss_pred HHHHHHHHHHHHhCCCC-CCCCEEEEEeecCCCccccccccccccCCCCEEEEeCCCCEEEEecCCc----CC--CceEE
Confidence 99999999987665544 399999999999999999999987765 699999 7799999998742 11 22689
Q ss_pred EEecCCeEEEEecCcccccceec
Q 008986 380 LSLKEGSLVVMRGNSADTARHVM 402 (547)
Q Consensus 380 L~Lp~GSLLVMsG~SRd~WkHaI 402 (547)
|.|..||||||+|++|+ +-|+|
T Consensus 148 l~L~sGsllvM~G~sR~-~~Hgv 169 (169)
T TIGR00568 148 LRLHSGDVVIMGGESRL-AFHGV 169 (169)
T ss_pred EEeCCCCEEEECCchhc-cccCC
Confidence 99999999999999999 66775
No 6
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=99.85 E-value=3.1e-22 Score=197.60 Aligned_cols=179 Identities=15% Similarity=0.259 Sum_probs=144.0
Q ss_pred cCCCeeEecccCCHHHHHHHHHHHHHHHH----cccccccccceeeeccccccCCCceeEEeecccccccccccccCCCC
Q 008986 219 VVKGLKLYEDVFTDSELSMLTDYVNELRL----AGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEI 294 (547)
Q Consensus 219 vv~GLkL~edf~s~~Ee~kLl~~Idel~~----~Grrg~l~G~Tv~~~rk~mKG~kRrviqfGy~y~y~~~~~~~~sg~~ 294 (547)
.+|||.|++||+|.+|+++|++.||.++| +|||.|.+|.++|+.++-+| .
T Consensus 70 p~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klk--------------------------t 123 (306)
T KOG3959|consen 70 PIPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLK--------------------------T 123 (306)
T ss_pred ccCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhc--------------------------c
Confidence 47999999999999999999999998775 56777777776666555332 1
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCCCCCCCeEEeeecCC-CCCCCCCCCCCC-CCCceEEE-Eccccccccccc------
Q 008986 295 GNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDE-AEYSQPFLKPPH-LDQPISTL-LLSDSAMAFGRS------ 365 (547)
Q Consensus 295 ~~vePIP~~L~~LidRLv~~~vIp~~~~PDqcIINeY~p-GqgI~PH~dpPH-fD~PIvtL-LLSec~M~FGr~------ 365 (547)
..+-++|++-..|.+||..-.++..+..+.||.+.|-.. |..|.||+|..| ||+.++++ +|++.++.+-..
T Consensus 124 ~~F~G~P~~~~~v~rrm~~yp~l~gfqp~EqCnLeYep~kgsaIdpH~DD~WiWGeRlv~~n~l~d~vl~lc~~e~~~sg 203 (306)
T KOG3959|consen 124 DTFVGMPEYADMVLRRMSEYPVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWIWGERLVRSNRLFDFVLKLCSKECLASG 203 (306)
T ss_pred CcccCCchHHHHHHHHhhccchhhccCcHHHcCcccccccCCccCccccchhhhhhheeehhhccHHHHHhhhhhhhccc
Confidence 257789999999999999999998888999999965444 999999999999 89989988 888777766521
Q ss_pred -cc----cCC----------CC-----CcceeEEEEecCCeEEEEecCcccccceecCC--CCCceEEEEEEeecCCCCC
Q 008986 366 -LV----CDN----------DG-----NYKGQLMLSLKEGSLVVMRGNSADTARHVMCP--SPNKRISITFFRVRPESNQ 423 (547)
Q Consensus 366 -~~----~~~----------~G-----e~~g~l~L~Lp~GSLLVMsG~SRd~WkHaIPp--vr~rRISITFRkvrp~~~~ 423 (547)
+. +.. .+ ...-.+.|++|.+|||||.|++||.|||+|-. ++.|||++|||...+++--
T Consensus 204 ~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr~hi~~RRvcvt~RE~~~~f~~ 283 (306)
T KOG3959|consen 204 IINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLRHHIRGRRVCVTMREAAKDFAE 283 (306)
T ss_pred eeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHHHHhhhhceeeeeHHhhhHhhcc
Confidence 00 000 01 11114899999999999999999999999977 7899999999999988763
No 7
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.80 E-value=2.2e-19 Score=173.62 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=120.1
Q ss_pred ecccCCCeeEecccCCHHHHHHHHHHH----HHHHHcccccccccceeeecc-ccccCCCceeEEeeccccccccccccc
Q 008986 216 MVNVVKGLKLYEDVFTDSELSMLTDYV----NELRLAGQSGELSGETFILFN-KQMKGNRRELIRFGIPIFRHIKEEATS 290 (547)
Q Consensus 216 ~vNvv~GLkL~edf~s~~Ee~kLl~~I----del~~~Grrg~l~G~Tv~~~r-k~mKG~kRrviqfGy~y~y~~~~~~~~ 290 (547)
..++.+|+.++.+|+ -.++.+|++.| .+.+|...+...+|+..++++ .-|+.+ ..||.|.....
T Consensus 10 ~~~~~~G~~~~~~~~-~~~~~~l~~~l~~~~~~~P~~~~~~~~~g~~~sV~r~~~W~~d-----~~gy~y~~~~p----- 78 (194)
T COG3145 10 RRQLAPGAVILPGFL-LLTQGALVAALLFLLSQAPWFRPRRTPYGKPMSVPRLLGWVTD-----RRGYRYSLRSP----- 78 (194)
T ss_pred cccCCCCeEEEeccc-ccchHHHHHHHHHhcccCcccceeecCCCcEeeeeeccceecc-----ccccccccccc-----
Confidence 456789999999999 55555555554 344566666667777776665 223331 23333321111
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCCCCCC--ceEEE-Eccccccccccccc
Q 008986 291 NNEIGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQ--PISTL-LLSDSAMAFGRSLV 367 (547)
Q Consensus 291 sg~~~~vePIP~~L~~LidRLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpPHfD~--PIvtL-LLSec~M~FGr~~~ 367 (547)
....|+|.++....+...+.+... ..||+||||+|.+|+.|+||+|...++. ||++| |++.|.|.||+..
T Consensus 79 ----~~~~p~p~l~~~~~~~~~~~g~~~--~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v~slSLg~~~~F~~~~~~- 151 (194)
T COG3145 79 ----LTGKPWPPLLALFHDLFGAAGYPF--EGPEAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRR- 151 (194)
T ss_pred ----CCCCCCCccHHHHHHHHHHhcCCC--CChhheeEEeccCCCccccccccccccCCCceEEEecCCCeEEEecccc-
Confidence 123344544443333333555544 3899999999999999999999888653 69999 7799999999853
Q ss_pred cCCCCCcceeEEEEecCCeEEEEecCcccccceecCCCCC---ceEEE
Q 008986 368 CDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCPSPN---KRISI 412 (547)
Q Consensus 368 ~~~~Ge~~g~l~L~Lp~GSLLVMsG~SRd~WkHaIPpvr~---rRISI 412 (547)
+..-..++.|.+||||||.|.+|+.|.|+||++.. .||||
T Consensus 152 -----r~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~~~~~~Rinl 194 (194)
T COG3145 152 -----RRGPGLRLRLEHGDVVVMGGPSRLAWHHIIPKTSRLTGQRINL 194 (194)
T ss_pred -----CCCCceeEEecCCCEEEecCCccccccccccccccCCcccccC
Confidence 11125899999999999999999999999999753 66654
No 8
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.92 E-value=0.00013 Score=73.05 Aligned_cols=158 Identities=19% Similarity=0.263 Sum_probs=91.2
Q ss_pred eeEecccCCHHHHHHHHHHHHHHHHcccccccccceeeeccccccCCCceeEEeecccccccccccccCCCCCCCCCChH
Q 008986 223 LKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIPA 302 (547)
Q Consensus 223 LkL~edf~s~~Ee~kLl~~Idel~~~Grrg~l~G~Tv~~~rk~mKG~kRrviqfGy~y~y~~~~~~~~sg~~~~vePIP~ 302 (547)
+..++++||++|+..|++.++...|. .| |.+.... .-.+.+++ +...-.++-.
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~------dg--------------~~taG~~-~~~vKnN~------ql~~d~~~a~ 54 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWV------DG--------------RVTAGAQ-AAQVKNNQ------QLPEDSPLAR 54 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCc------cC--------------CcCcCcc-chhccccc------ccCCCCHHHH
Confidence 35789999999999999998764331 11 1111110 00000000 1112223333
Q ss_pred HHHH-HHHHHHHccCCCCCCCC---CeEEeeecCCCCCCCCCCCCCCCC--------Cc-e-EEEEcccccccccccccc
Q 008986 303 LLQS-VIDHLVQWQLIPEYKKP---NGCIINFFDEAEYSQPFLKPPHLD--------QP-I-STLLLSDSAMAFGRSLVC 368 (547)
Q Consensus 303 ~L~~-LidRLv~~~vIp~~~~P---DqcIINeY~pGqgI~PH~dpPHfD--------~P-I-vtLLLSec~M~FGr~~~~ 368 (547)
.|.. |.++|.+...+.....| -.+.+|.|.+|++-.+|.|..... +. + ++|+|++..=--|-.+.+
T Consensus 55 ~l~~~i~~~L~~~~l~~sa~lp~~i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~ 134 (226)
T PRK05467 55 ELGNLILDALTRNPLFFSAALPRKIHPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVI 134 (226)
T ss_pred HHHHHHHHHHhcCchhhhhccccccccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEE
Confidence 3433 44444332222211233 367899999999999999987642 12 2 334788653223443433
Q ss_pred CCCCCcceeEEEEecCCeEEEEecCcccccceecCC-CCCceEEEEE
Q 008986 369 DNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCP-SPNKRISITF 414 (547)
Q Consensus 369 ~~~Ge~~g~l~L~Lp~GSLLVMsG~SRd~WkHaIPp-vr~rRISITF 414 (547)
... .+..++.++.|++++.... --|.+.| ++..|+++||
T Consensus 135 ~~~---~g~~~Vkp~aG~~vlfps~----~lH~v~pVt~G~R~~~~~ 174 (226)
T PRK05467 135 EDT---YGEHRVKLPAGDLVLYPST----SLHRVTPVTRGVRVASFF 174 (226)
T ss_pred ecC---CCcEEEecCCCeEEEECCC----CceeeeeccCccEEEEEe
Confidence 311 1357899999999999864 4499988 5679999997
No 9
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=97.65 E-value=0.0025 Score=59.58 Aligned_cols=164 Identities=20% Similarity=0.248 Sum_probs=95.1
Q ss_pred CCeeEecccCCHHHHHHHHHHHHHHHHcccccccc-cceeeeccccccCCCceeEEeecccccccccccccCCCCCCCCC
Q 008986 221 KGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELS-GETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEP 299 (547)
Q Consensus 221 ~GLkL~edf~s~~Ee~kLl~~Idel~~~Grrg~l~-G~Tv~~~rk~mKG~kRrviqfGy~y~y~~~~~~~~sg~~~~veP 299 (547)
|++.++++||+++|++.|++..+...+ +.... +.+ ..-.....|.- .+. ....
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~---~~~~~~~~~-----~~~~~~~~R~~-~~~-----------------~l~~ 54 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGW---RGEVTRGDT-----NPNHDSKYRQS-NGT-----------------WLEL 54 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcc---cceeecCCC-----CccccCCCEee-cce-----------------ecCC
Confidence 568899999999999999988865322 11111 100 00000001110 000 1111
Q ss_pred --ChHHHHHHHHHHHHccCCC--CCCCCCeEEeeecCCCCCCCCCCCCCCCC---CceEEE--EccccccccccccccCC
Q 008986 300 --IPALLQSVIDHLVQWQLIP--EYKKPNGCIINFFDEAEYSQPFLKPPHLD---QPISTL--LLSDSAMAFGRSLVCDN 370 (547)
Q Consensus 300 --IP~~L~~LidRLv~~~vIp--~~~~PDqcIINeY~pGqgI~PH~dpPHfD---~PIvtL--LLSec~M~FGr~~~~~~ 370 (547)
-.+..+.|.+|+...-.++ .....+.+.|..|.+|+...+|.|..... +.++|+ .|++. .=|-...|..
T Consensus 55 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~--~~GG~~~f~~ 132 (178)
T smart00702 55 LKGDLVIERIRQRLADFLGLLRGLPLSAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLNDV--EEGGELVFPG 132 (178)
T ss_pred CCCCHHHHHHHHHHHHHHCCCchhhccCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEeccC--CcCceEEecC
Confidence 1345555666666554443 01367899999999999999999876643 446555 56742 1222222221
Q ss_pred CCCcceeEEEEecCCeEEEEecCcccccceecCCCC-CceEEEEE
Q 008986 371 DGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCPSP-NKRISITF 414 (547)
Q Consensus 371 ~Ge~~g~l~L~Lp~GSLLVMsG~SRd~WkHaIPpvr-~rRISITF 414 (547)
.+. ....++.-..|++++....-. ...|++.|+. ..|+++|.
T Consensus 133 ~~~-~~~~~v~P~~G~~v~f~~~~~-~~~H~v~pv~~G~r~~~~~ 175 (178)
T smart00702 133 LGL-MVCATVKPKKGDLLFFPSGRG-RSLHGVCPVTRGSRWAITG 175 (178)
T ss_pred CCC-ccceEEeCCCCcEEEEeCCCC-CccccCCcceeCCEEEEEE
Confidence 111 124688889999999874322 5669999976 69999885
No 10
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.33 E-value=0.00017 Score=60.99 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=45.1
Q ss_pred CCeEEeeecC---CCCCCCCCCCCCCCCCceEEEEc--cccccccccccccCCCCCcceeEEEEecCCeEEEEecC----
Q 008986 323 PNGCIINFFD---EAEYSQPFLKPPHLDQPISTLLL--SDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGN---- 393 (547)
Q Consensus 323 PDqcIINeY~---pGqgI~PH~dpPHfD~PIvtLLL--Sec~M~FGr~~~~~~~Ge~~g~l~L~Lp~GSLLVMsG~---- 393 (547)
+++|.+|+|. .|.++.+|.|.. +.++|+++ ....+.|... + ..+.+...+++++|+-|+
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~---~~~~Til~~~~~~gL~~~~~------~---~~~~v~~~~~~~~v~~G~~l~~ 68 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE---DGLLTILFQDEVGGLQVRDD------G---EWVDVPPPPGGFIVNFGDALEI 68 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-----SSEEEEEETSTS-EEEEET------T---EEEE----TTCEEEEEBHHHHH
T ss_pred CCEEEEEECCCcccCCceeCCCcCC---CCeEEEEecccchheecccc------c---cccCccCccceeeeeceeeeec
Confidence 4789999999 677755555433 26888854 4444444332 1 245666666677777776
Q ss_pred ----cccccceecCCCC-CceEEEEEEe
Q 008986 394 ----SADTARHVMCPSP-NKRISITFFR 416 (547)
Q Consensus 394 ----SRd~WkHaIPpvr-~rRISITFRk 416 (547)
....+.|.+.+.. ..|+|+||+-
T Consensus 69 ~t~g~~~~~~HrV~~~~~~~R~s~~~f~ 96 (98)
T PF03171_consen 69 LTNGRYPATLHRVVPPTEGERYSLTFFL 96 (98)
T ss_dssp HTTTSS----EEEE--STS-EEEEEEEE
T ss_pred ccCCccCCceeeeEcCCCCCEEEEEEEE
Confidence 7889999998875 8999999973
No 11
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=96.20 E-value=0.0041 Score=52.56 Aligned_cols=86 Identities=22% Similarity=0.265 Sum_probs=52.5
Q ss_pred EEeeecCCCCCCCCCCCCCCCCCceEEE--Eccccccc-cccccccCCCCCcce-eEEEE-----ecCCeEEEEecCccc
Q 008986 326 CIINFFDEAEYSQPFLKPPHLDQPISTL--LLSDSAMA-FGRSLVCDNDGNYKG-QLMLS-----LKEGSLVVMRGNSAD 396 (547)
Q Consensus 326 cIINeY~pGqgI~PH~dpPHfD~PIvtL--LLSec~M~-FGr~~~~~~~Ge~~g-~l~L~-----Lp~GSLLVMsG~SRd 396 (547)
|-|+.|.+|+.+.||.|........+|+ .|++.... .|-.+.+-...+..+ ...+. ..+|+++++.+ +
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~---~ 77 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPS---D 77 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEES---C
T ss_pred CEEEEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeC---C
Confidence 5689999999999999886544445555 46644311 111111111100111 23333 88999999999 7
Q ss_pred ccceecCCC--CCceEEEEE
Q 008986 397 TARHVMCPS--PNKRISITF 414 (547)
Q Consensus 397 ~WkHaIPpv--r~rRISITF 414 (547)
..-|++.++ ..+|++||+
T Consensus 78 ~~~H~v~~v~~~~~R~~l~~ 97 (100)
T PF13640_consen 78 NSLHGVTPVGEGGRRYSLTF 97 (100)
T ss_dssp TCEEEEEEE-EESEEEEEEE
T ss_pred CCeecCcccCCCCCEEEEEE
Confidence 778999888 579999987
No 12
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=95.89 E-value=0.4 Score=50.41 Aligned_cols=169 Identities=16% Similarity=0.222 Sum_probs=100.3
Q ss_pred ecccCCCeeEecccCCHHHHHHHHHHHHHHHHcccccccccceeeecc--ccccCCCceeEEeecccccccccccccCCC
Q 008986 216 MVNVVKGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFN--KQMKGNRRELIRFGIPIFRHIKEEATSNNE 293 (547)
Q Consensus 216 ~vNvv~GLkL~edf~s~~Ee~kLl~~Idel~~~Grrg~l~G~Tv~~~r--k~mKG~kRrviqfGy~y~y~~~~~~~~sg~ 293 (547)
.++.=|=+.+|+||||++|.+.|++.... .++.-+++-.. +.. -...|+ ..|.-++
T Consensus 49 ~lS~~P~i~~~~nfLs~~Ecd~Li~la~~--------~l~~S~v~~~~~g~~~-~s~~RT-S~~~~l~------------ 106 (310)
T PLN00052 49 AVSWQPRIFVYKGFLSDAECDHLVKLAKK--------KIQRSMVADNKSGKSV-MSEVRT-SSGMFLD------------ 106 (310)
T ss_pred EecCCCCEEEECCcCCHHHHHHHHHhccc--------ccccceeecCCCCccc-cCCCEE-ecceeec------------
Confidence 35667889999999999999999987642 11111111000 000 000111 1111010
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCCC-------CCCceEEE--Ecccccccccc
Q 008986 294 IGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPH-------LDQPISTL--LLSDSAMAFGR 364 (547)
Q Consensus 294 ~~~vePIP~~L~~LidRLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpPH-------fD~PIvtL--LLSec~M~FGr 364 (547)
... -+.++.|.+|+..+..++.. --...-|-.|.+||...+|.|-.+ -++.+.|+ .|++.. -|-
T Consensus 107 -~~~---dpvv~~I~~Ria~~t~lp~~-~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~--~GG 179 (310)
T PLN00052 107 -KRQ---DPVVSRIEERIAAWTFLPEE-NAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVD--KGG 179 (310)
T ss_pred -CCC---CHHHHHHHHHHHHHhCCCcc-cCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCC--CCC
Confidence 011 24678899999999888753 456677888999999999988433 23568777 567542 333
Q ss_pred ccccCCCC-----C--------cceeEEEEecCCeEEEEe-----cCcccccceecCCCC-CceEEEE
Q 008986 365 SLVCDNDG-----N--------YKGQLMLSLKEGSLVVMR-----GNSADTARHVMCPSP-NKRISIT 413 (547)
Q Consensus 365 ~~~~~~~G-----e--------~~g~l~L~Lp~GSLLVMs-----G~SRd~WkHaIPpvr-~rRISIT 413 (547)
...|..-. . -...++|.=.+|++|+.. |..-..=.|+-+|+. ..++++|
T Consensus 180 eT~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~at 247 (310)
T PLN00052 180 ETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAP 247 (310)
T ss_pred ceecCCcccccccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEE
Confidence 32232110 0 011478888889988864 444456688888864 5777776
No 13
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=95.15 E-value=0.34 Score=49.96 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=30.9
Q ss_pred EEEEecCCeEEEEecCcccccceecCCC-C--CceEEEEEEeecCCC
Q 008986 378 LMLSLKEGSLVVMRGNSADTARHVMCPS-P--NKRISITFFRVRPES 421 (547)
Q Consensus 378 l~L~Lp~GSLLVMsG~SRd~WkHaIPpv-r--~rRISITFRkvrp~~ 421 (547)
+.+.|++|+++++.+..- |+=-+. . .+|+++|+|-+..+.
T Consensus 209 v~~~lkaGd~~~f~~~t~----HgS~~N~S~~~~R~~~~~ry~~~~~ 251 (288)
T TIGR01762 209 VPMQMKAGQFIIFWSTLM----HASYPNSGESQMRMGFASRYVPSFV 251 (288)
T ss_pred eeeeeCCceEEEECCCce----ecCCCCCCCCceEEEEEEEEcCCCc
Confidence 688999999999998763 554443 2 469999999986544
No 14
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=94.59 E-value=0.3 Score=48.77 Aligned_cols=156 Identities=17% Similarity=0.239 Sum_probs=84.6
Q ss_pred eEecccCCHHHHHHHHHHHHHHHHcccccccccceeeeccccccCCCceeEEeecccccccccccccCCCCCCCCCChHH
Q 008986 224 KLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIPAL 303 (547)
Q Consensus 224 kL~edf~s~~Ee~kLl~~Idel~~~Grrg~l~G~Tv~~~rk~mKG~kRrviqfGy~y~y~~~~~~~~sg~~~~vePIP~~ 303 (547)
.-|+.+||++++.++-+.+..-.| .- ||.++.+-+.---++. +...-.++=..
T Consensus 5 lhIp~VLs~a~va~iRa~l~~A~w------------------~d--Grat~g~q~a~vk~n~-------qlp~~s~l~~~ 57 (229)
T COG3128 5 LHIPEVLSEAQVARIRAALEQAEW------------------VD--GRATQGPQGAQVKNNL-------QLPQDSALARE 57 (229)
T ss_pred EechhhCCHHHHHHHHHHHhhccc------------------cc--cccccCcchhhhhccc-------cCCcccHHHHH
Confidence 457899999998877766654332 22 2444333221110111 22234455555
Q ss_pred HHH-HHHHHHHcc-----CCCCCCCCCeEEeeecCCCCCCCCCCCCCC----CCCc-------eEEEEcccccccccccc
Q 008986 304 LQS-VIDHLVQWQ-----LIPEYKKPNGCIINFFDEAEYSQPFLKPPH----LDQP-------ISTLLLSDSAMAFGRSL 366 (547)
Q Consensus 304 L~~-LidRLv~~~-----vIp~~~~PDqcIINeY~pGqgI~PH~dpPH----fD~P-------IvtLLLSec~M~FGr~~ 366 (547)
+.. |.+++.... -+|- +.-.=.-|.|.+|+.-++|+|..- =++. .|+++|++=.=-=|-.+
T Consensus 58 vg~~il~al~~~plff~aALp~--t~~~P~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeL 135 (229)
T COG3128 58 LGNEILQALTAHPLFFAAALPR--TCLPPLFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGEL 135 (229)
T ss_pred HHHHHHHHHHhchhHHHhhccc--ccCCchhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceE
Confidence 544 444444432 2231 222235799999999999997543 1211 13334442211001111
Q ss_pred ccCCCCCcceeEEEEecCCeEEEEecCcccccceecCC-CCCceEEEEEE
Q 008986 367 VCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCP-SPNKRISITFF 415 (547)
Q Consensus 367 ~~~~~Ge~~g~l~L~Lp~GSLLVMsG~SRd~WkHaIPp-vr~rRISITFR 415 (547)
.. .+.| |...+.||.|+|++.-+.| .|++-| +|+.|+-+-|=
T Consensus 136 Vv--~dtY-g~h~VklPAGdLVlypStS----lH~VtPVTRg~R~asffW 178 (229)
T COG3128 136 VV--NDTY-GNHRVKLPAGDLVLYPSTS----LHEVTPVTRGERFASFFW 178 (229)
T ss_pred EE--eccc-cceEEeccCCCEEEccccc----ceeccccccCceEEEeee
Confidence 00 1222 3578999999999998887 688877 47899987763
No 15
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=91.20 E-value=9.8 Score=38.81 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=24.6
Q ss_pred CCCeeEecccCCHHHHHHHHHHHHHHHH
Q 008986 220 VKGLKLYEDVFTDSELSMLTDYVNELRL 247 (547)
Q Consensus 220 v~GLkL~edf~s~~Ee~kLl~~Idel~~ 247 (547)
=+|..+++++|+++|.+.|.+.|+.+..
T Consensus 27 ~dGyvvl~~vls~eev~~lr~~i~~~~~ 54 (277)
T TIGR02408 27 RDGFLLLENLFSDDEVAALLAEVERMTR 54 (277)
T ss_pred HCCEEECcccCCHHHHHHHHHHHHHHHh
Confidence 3788899999999999999999987753
No 16
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=90.04 E-value=2.6 Score=38.45 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.0
Q ss_pred CCeeEecccCCHHHHHHHHHHHHHH
Q 008986 221 KGLKLYEDVFTDSELSMLTDYVNEL 245 (547)
Q Consensus 221 ~GLkL~edf~s~~Ee~kLl~~Idel 245 (547)
+|..+++++|+++|.++|.+.++++
T Consensus 4 ~Gyvvi~~~l~~~~~~~l~~~~~~~ 28 (211)
T PF05721_consen 4 DGYVVIRNVLSPEEVERLREELDRL 28 (211)
T ss_dssp HSEEEETTSS-HHHHHHHHHHHHHH
T ss_pred CcEEEECCcCCHHHHHHHHHHHHHH
Confidence 5888999999999999999999876
No 17
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=89.39 E-value=0.46 Score=51.08 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=68.3
Q ss_pred CCCChHH-HHHHHHHHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCCCCC--CceEEE-EccccccccccccccCCCC
Q 008986 297 LEPIPAL-LQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLD--QPISTL-LLSDSAMAFGRSLVCDNDG 372 (547)
Q Consensus 297 vePIP~~-L~~LidRLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpPHfD--~PIvtL-LLSec~M~FGr~~~~~~~G 372 (547)
...||++ |....++..........+.+..+|+|||.+|+-++-|.+.-..| .||++. +.-+|.+.+|-. ..+
T Consensus 189 ~~~~~~~ll~~~~~~~~~a~~~~~~~~~~Gli~nYlsi~~tl~ih~d~reld~~~pf~s~s~g~~ai~lLg~m----~l~ 264 (378)
T KOG2731|consen 189 HYNIKPSLLGLLREKVKAAKGFSHIVIRPGLIKNYLSIDDTLGIHLDCRELDLSKPFYSPSLGQGAILLLGMM----CLG 264 (378)
T ss_pred CCCCChHHhhhhhhhhhhhcCccceeccCcceeeecccCcEEEEEeehhhcccCCccccccccccceeeeccc----ccC
Confidence 3445554 55565665555444444567779999999999999999888766 576656 445555555532 123
Q ss_pred CcceeEEEEecCCeEEEEecCcccccceecCC
Q 008986 373 NYKGQLMLSLKEGSLVVMRGNSADTARHVMCP 404 (547)
Q Consensus 373 e~~g~l~L~Lp~GSLLVMsG~SRd~WkHaIPp 404 (547)
+ .+..+.|--|-.++|.|.+| +..|+||-
T Consensus 265 e--~p~p~~lrsGdv~im~Gfsr-lv~haIp~ 293 (378)
T KOG2731|consen 265 E--NPDPMTLRSGDVVIMDGFSR-LVEHAIPE 293 (378)
T ss_pred C--CCCccccccCceEeecchHH-HHhhccch
Confidence 2 24678889999999999666 55788873
No 18
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=86.80 E-value=3.3 Score=42.71 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=47.2
Q ss_pred CCCCCeEEeeecCCCCCCCCCC-CCCCCCC----------------ceEEE-Eccccc--------cccccccccCCCCC
Q 008986 320 YKKPNGCIINFFDEAEYSQPFL-KPPHLDQ----------------PISTL-LLSDSA--------MAFGRSLVCDNDGN 373 (547)
Q Consensus 320 ~~~PDqcIINeY~pGqgI~PH~-dpPHfD~----------------PIvtL-LLSec~--------M~FGr~~~~~~~Ge 373 (547)
.+.+|-++||+++|-...+++. ++|.||. --|.| .-| |. .-|+ .+ .++
T Consensus 135 ~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL~~~StVAVY~~s-~~~~~~~~W~VgLk---a~--D~~ 208 (253)
T PF12933_consen 135 SCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENLVERSTVAVYSYS-CEEPEPADWHVGLK---AW--DIE 208 (253)
T ss_dssp -----EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB-TT--EEEEEEE------TTSEEEEEE---TT----S
T ss_pred ceeeehhhhhccCcccccccccccccccCCcceeeeeccccccccccceEEEEec-CCCCCCCceEEEEe---ec--CCC
Confidence 4679999999999955556655 6777762 11223 222 11 1111 01 111
Q ss_pred cceeEEEEecCCeEEEEecCcccccceecCCCCCceEEEEEE
Q 008986 374 YKGQLMLSLKEGSLVVMRGNSADTARHVMCPSPNKRISITFF 415 (547)
Q Consensus 374 ~~g~l~L~Lp~GSLLVMsG~SRd~WkHaIPpvr~rRISITFR 415 (547)
.-.+.++|+.|+.|.|-++--..=+||+=+-...|+|-|=|
T Consensus 209 -tP~L~vPL~sgd~Y~Mldd~N~tHqH~VlaG~~~RfSSTHR 249 (253)
T PF12933_consen 209 -TPGLAVPLRSGDCYYMLDDFNATHQHCVLAGSSARFSSTHR 249 (253)
T ss_dssp -S-EEEEEE-TT-EEEE-TTHHHHEEEEEE--SS-EEEEEEE
T ss_pred -CCeeEEeccCCCeEEEccccchhhHHHHhcCCCccccccce
Confidence 22499999999999999999999999999999999999987
No 19
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=85.92 E-value=9.8 Score=39.97 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=100.0
Q ss_pred ceeeEeeecCeecccCCCeeEecccCCHHHHHHHHHHHHHHHHcccccccccceeeeccccccCCCc--eeEEeeccccc
Q 008986 205 GFAAKEQVKGHMVNVVKGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRR--ELIRFGIPIFR 282 (547)
Q Consensus 205 ~f~~~E~v~G~~vNvv~GLkL~edf~s~~Ee~kLl~~Idel~~~Grrg~l~G~Tv~~~rk~mKG~kR--rviqfGy~y~y 282 (547)
.|...-.++=..+..-|-+.+|.||++++|++.|++.-. ..+...|+......-+.... |+-+.-+
T Consensus 81 ~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak--------~~l~~stv~~~~~~~~~~~~~~R~S~~t~---- 148 (289)
T KOG1591|consen 81 PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAK--------PKLERSTVVADKGTGHSTTSAVRTSSGTF---- 148 (289)
T ss_pred cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhh--------hhhhceeeeccCCcccccceeeEecceeE----
Confidence 444444444455666788999999999999999987753 22333333211111000000 1111111
Q ss_pred ccccccccCCCCCCCCCChHHHHHHHHHHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCCC-----------CCCceE
Q 008986 283 HIKEEATSNNEIGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPH-----------LDQPIS 351 (547)
Q Consensus 283 ~~~~~~~~sg~~~~vePIP~~L~~LidRLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpPH-----------fD~PIv 351 (547)
....=.+.+..|-+|+..+..++-+ .-.+.-|=-|..|++..||.|.-- .|++|.
T Consensus 149 -------------l~~~~~~~~~~i~~ri~~~T~l~~e-~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~Ria 214 (289)
T KOG1591|consen 149 -------------LPDGASPVVSRIEQRIADLTGLPVE-NGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIA 214 (289)
T ss_pred -------------ecCCCCHHHHHHHHHHHhccCCCcc-cCccceEEEecCCccccccccccccccchhhhhcccCCcce
Confidence 1112345677788888888888763 778888999999999999986431 236787
Q ss_pred EEE--ccccccccccccccCCCCCcceeEEEEecCCeEEEE-----ecCcccccceecCCCC-CceEEEE
Q 008986 352 TLL--LSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVM-----RGNSADTARHVMCPSP-NKRISIT 413 (547)
Q Consensus 352 tLL--LSec~M~FGr~~~~~~~Ge~~g~l~L~Lp~GSLLVM-----sG~SRd~WkHaIPpvr-~rRISIT 413 (547)
|+| ||+.. =|-...| |.- ...+.|....|+.|.- .|.--..=+|+-||+- ..|++-|
T Consensus 215 T~l~yls~v~--~GG~TvF--P~~-~~~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~ 279 (289)
T KOG1591|consen 215 TVLMYLSDVE--QGGETVF--PNL-GMKPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIAT 279 (289)
T ss_pred eEEEEecccC--CCCcccC--CCC-CCcccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeee
Confidence 774 34221 1111111 110 0114778888888763 2333334468888863 3454433
No 20
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=80.19 E-value=8.3 Score=37.90 Aligned_cols=113 Identities=15% Similarity=0.214 Sum_probs=77.1
Q ss_pred CCCCChHHHHHHHHHHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCCC-CCCce-EEEEccccccccccc--cccCC-
Q 008986 296 NLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPH-LDQPI-STLLLSDSAMAFGRS--LVCDN- 370 (547)
Q Consensus 296 ~vePIP~~L~~LidRLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpPH-fD~PI-vtLLLSec~M~FGr~--~~~~~- 370 (547)
....+|+.+.+++++|-+.|-. +|. .+|..|.+|++---|+|-.= .--|+ +.++||+=.-+|.-. .-.+.
T Consensus 39 ~~~~yP~~~~~fl~~ch~aGQ~----rpt-plllrY~~gdyn~LHqdlyGe~vFPlQvv~lLs~Pg~DftGGEFVltEQr 113 (173)
T PF09859_consen 39 IDARYPATLAEFLARCHAAGQT----RPT-PLLLRYGPGDYNCLHQDLYGEHVFPLQVVILLSEPGEDFTGGEFVLTEQR 113 (173)
T ss_pred CCCCCCccHHHHHHHHHhccCC----CCc-hhhheeCCCCccccccCCCCCcccCeEEEEEcCCCCCcccCceEEEEEec
Confidence 3567899999999999998876 343 46788999999666775321 11366 445889877666432 11111
Q ss_pred CCCcceeEEEEecCCeEEEEe----------cCcccccceecCCCCC-ceEEEE
Q 008986 371 DGNYKGQLMLSLKEGSLVVMR----------GNSADTARHVMCPSPN-KRISIT 413 (547)
Q Consensus 371 ~Ge~~g~l~L~Lp~GSLLVMs----------G~SRd~WkHaIPpvr~-rRISIT 413 (547)
+.--+...-+.|..|..+|+. |..|-.-+|+|..+++ +|..|.
T Consensus 114 PR~QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLg 167 (173)
T PF09859_consen 114 PRMQSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLG 167 (173)
T ss_pred CCccCccccCCcCCCCEEEEecCCCCcCCCccceecccccccccccccceEEEE
Confidence 111123467999999999985 6667778999999874 887764
No 21
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=60.31 E-value=13 Score=35.90 Aligned_cols=36 Identities=19% Similarity=0.496 Sum_probs=31.6
Q ss_pred eEEEEecCCeEEEEecCcccccceecCCCC------CceEEEEEE
Q 008986 377 QLMLSLKEGSLVVMRGNSADTARHVMCPSP------NKRISITFF 415 (547)
Q Consensus 377 ~l~L~Lp~GSLLVMsG~SRd~WkHaIPpvr------~rRISITFR 415 (547)
-+++.+.+|++|++.|+ ...|++.|+. ..||||.|-
T Consensus 127 g~~~~~~~GtVl~~~~~---~~~Hgvtpv~~~~~~~~~R~slvfy 168 (171)
T PF12851_consen 127 GVAFAYQPGTVLIFCAK---RELHGVTPVESPNRNHGTRISLVFY 168 (171)
T ss_pred CEEEecCCCcEEEEccc---ceeeecCcccCCCCCCCeEEEEEEE
Confidence 47899999999999875 6789999987 799999984
No 22
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=46.29 E-value=53 Score=34.63 Aligned_cols=100 Identities=20% Similarity=0.196 Sum_probs=61.8
Q ss_pred eEEeeecCCCCCCCC-C-CCCCCCCCceEEEEccccccccccccccCCCCC-ccee-EEEEecCCeEEEEecCcccccc-
Q 008986 325 GCIINFFDEAEYSQP-F-LKPPHLDQPISTLLLSDSAMAFGRSLVCDNDGN-YKGQ-LMLSLKEGSLVVMRGNSADTAR- 399 (547)
Q Consensus 325 qcIINeY~pGqgI~P-H-~dpPHfD~PIvtLLLSec~M~FGr~~~~~~~Ge-~~g~-l~L~Lp~GSLLVMsG~SRd~Wk- 399 (547)
..-+|.|.+-..... . ...+|-|--++|||+.+.+ + .+.+...++ ..|. +.++-.+|+++|--|+.=..|+
T Consensus 183 ~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~v---~-GLQV~~~~~~~~g~Wi~Vpp~pg~~VVNiGD~L~~wTn 258 (332)
T PLN03002 183 TMRLLRYQGISDPSKGIYACGAHSDFGMMTLLATDGV---M-GLQICKDKNAMPQKWEYVPPIKGAFIVNLGDMLERWSN 258 (332)
T ss_pred heeeeeCCCCCCcccCccccccccCCCeEEEEeeCCC---C-ceEEecCCCCCCCcEEECCCCCCeEEEEHHHHHHHHhC
Confidence 345888977322111 1 1567766567888765321 1 122211221 1234 7777788999999999999998
Q ss_pred -------eecCCCCCceEEEEEEeecCCCCCCCCCCC
Q 008986 400 -------HVMCPSPNKRISITFFRVRPESNQSQSPPT 429 (547)
Q Consensus 400 -------HaIPpvr~rRISITFRkvrp~~~~~~~p~~ 429 (547)
|-+......|+||.|. +.|.......|++
T Consensus 259 g~~kSt~HRVv~~~~~R~Sia~F-~~p~~d~~i~pl~ 294 (332)
T PLN03002 259 GFFKSTLHRVLGNGQERYSIPFF-VEPNHDCLVECLP 294 (332)
T ss_pred CeeECcCCeecCCCCCeeEEEEE-ecCCCCeeEecCC
Confidence 7775555689999998 5565555445554
No 23
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=45.27 E-value=2.1e+02 Score=28.53 Aligned_cols=86 Identities=20% Similarity=0.330 Sum_probs=50.1
Q ss_pred CCCeEEeeecCCCCCCCCCCCCCCCCCceEEE-Ecc----cccccccccccc---C-------CCCCcceeEEEEecCCe
Q 008986 322 KPNGCIINFFDEAEYSQPFLKPPHLDQPISTL-LLS----DSAMAFGRSLVC---D-------NDGNYKGQLMLSLKEGS 386 (547)
Q Consensus 322 ~PDqcIINeY~pGqgI~PH~dpPHfD~PIvtL-LLS----ec~M~FGr~~~~---~-------~~Ge~~g~l~L~Lp~GS 386 (547)
.+..|=+|.+.+|+.-..|.-+.- -|+++ .++ +-.+.|.....- . .+......+.+.-..|-
T Consensus 94 ~i~~~W~ni~~~Gg~h~~H~Hp~~---~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~ 170 (201)
T TIGR02466 94 RIQKAWVNILPQGGTHSPHLHPGS---VISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGR 170 (201)
T ss_pred EEeeEeEEEcCCCCccCceECCCc---eEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCe
Confidence 357888999999999766765432 14444 332 123445432210 0 00011112456667888
Q ss_pred EEEEecCcccccceecCCC--CCceEEEEE
Q 008986 387 LVVMRGNSADTARHVMCPS--PNKRISITF 414 (547)
Q Consensus 387 LLVMsG~SRd~WkHaIPpv--r~rRISITF 414 (547)
||+.-.. -.|+++|- .+.||||.|
T Consensus 171 lvlFPS~----L~H~v~p~~~~~~RISiSF 196 (201)
T TIGR02466 171 VLLFESW----LRHEVPPNESEEERISVSF 196 (201)
T ss_pred EEEECCC----CceecCCCCCCCCEEEEEE
Confidence 8887654 34788885 469999998
No 24
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=40.50 E-value=23 Score=33.43 Aligned_cols=20 Identities=40% Similarity=0.476 Sum_probs=18.3
Q ss_pred hhhhhhHHHHHHHHHHHhhh
Q 008986 45 EFAAANAIIDALCGHLAEVR 64 (547)
Q Consensus 45 EFAAANAIID~lc~HL~~v~ 64 (547)
..||||+.+|+|+.|.+..|
T Consensus 148 ~YaaAN~~lda~a~~~~~~g 167 (181)
T PF08659_consen 148 AYAAANAFLDALARQRRSRG 167 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhCC
Confidence 68999999999999999865
No 25
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=36.40 E-value=1.5e+02 Score=25.53 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=37.6
Q ss_pred EEeeecCCCCCCCCCCCCCCCCCceEEE-Ec---ccc-cccccccccc----------CCCCCcceeEEEEecCCeEEEE
Q 008986 326 CIINFFDEAEYSQPFLKPPHLDQPISTL-LL---SDS-AMAFGRSLVC----------DNDGNYKGQLMLSLKEGSLVVM 390 (547)
Q Consensus 326 cIINeY~pGqgI~PH~dpPHfD~PIvtL-LL---Sec-~M~FGr~~~~----------~~~Ge~~g~l~L~Lp~GSLLVM 390 (547)
|=+|.|+.|+...+|.-+.. -|+++ .+ .++ .+.|-..... ...........+....|.|||.
T Consensus 2 ~W~ni~~~g~~~~~H~H~~s---~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlF 78 (101)
T PF13759_consen 2 SWANIYRKGGYNEPHNHPNS---WLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLF 78 (101)
T ss_dssp EEEEEE-TT--EEEE--TT----SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEE
T ss_pred eeEEEeCCCCccCceECCCc---CEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEe
Confidence 45789999999766663321 24444 33 111 2333322110 0011222348888899999999
Q ss_pred ecCcccccceecCCCC--CceEEEEE
Q 008986 391 RGNSADTARHVMCPSP--NKRISITF 414 (547)
Q Consensus 391 sG~SRd~WkHaIPpvr--~rRISITF 414 (547)
-+. -.|++.|.. ..||||.|
T Consensus 79 Ps~----l~H~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 79 PSW----LWHGVPPNNSDEERISISF 100 (101)
T ss_dssp ETT----SEEEE----SSS-EEEEEE
T ss_pred CCC----CEEeccCcCCCCCEEEEEc
Confidence 864 358888854 58999998
No 26
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.53 E-value=1.8e+02 Score=29.70 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=71.6
Q ss_pred CCCCChHHHHHHHHHHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCCCCCC---ce-EEEEccccccccccc--cccC
Q 008986 296 NLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQ---PI-STLLLSDSAMAFGRS--LVCD 369 (547)
Q Consensus 296 ~vePIP~~L~~LidRLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpPHfD~---PI-vtLLLSec~M~FGr~--~~~~ 369 (547)
..-++|..+.+.++||-..|-+ +|.- ++-.|-|||+---|+|= +|+ |+ +.++|||---+|.-. ...+
T Consensus 101 ~~~r~P~tlad~L~~CHaAGQ~----RpTp-LlLqYgpgD~NcLHQDL--YGelvFPLQvailLsePg~DfTGGEF~lvE 173 (236)
T COG3826 101 IDARYPATLADFLARCHAAGQV----RPTP-LLLQYGPGDYNCLHQDL--YGELVFPLQVAILLSEPGTDFTGGEFVLVE 173 (236)
T ss_pred CCCCCchhHHHHHHHHHhccCc----cCCc-eeEEecCCccchhhhhh--hhceeeeeeEEEeccCCCCcccCceEEEEe
Confidence 4668999999999999999877 4443 55679999995556642 332 55 445888776666432 1112
Q ss_pred C-CCCcceeEEEEecCCeEEEE----------ecCcccccceecCCCCC
Q 008986 370 N-DGNYKGQLMLSLKEGSLVVM----------RGNSADTARHVMCPSPN 407 (547)
Q Consensus 370 ~-~Ge~~g~l~L~Lp~GSLLVM----------sG~SRd~WkHaIPpvr~ 407 (547)
. +.-.+..-.++|+.|--+|+ .|..|-.-.|++..+++
T Consensus 174 QRPR~QSr~~vvpLrqG~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRS 222 (236)
T COG3826 174 QRPRMQSRPTVVPLRQGDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRS 222 (236)
T ss_pred cccccccCCceeeccCCceEEEEeecCcccCccCccccchhcchhhhhc
Confidence 1 11112235689999999987 48888888999988764
No 27
>PLN02947 oxidoreductase
Probab=33.92 E-value=1.3e+02 Score=32.49 Aligned_cols=86 Identities=24% Similarity=0.308 Sum_probs=55.1
Q ss_pred CeEEeeecCCCCCCCC-CCCCCCCCCceEEEEccccccccccccccCCCCCccee-EEEEecCCeEEEEecCccccccee
Q 008986 324 NGCIINFFDEAEYSQP-FLKPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNYKGQ-LMLSLKEGSLVVMRGNSADTARHV 401 (547)
Q Consensus 324 DqcIINeY~pGqgI~P-H~dpPHfD~PIvtLLLSec~M~FGr~~~~~~~Ge~~g~-l~L~Lp~GSLLVMsG~SRd~WkHa 401 (547)
..+-+|+|.+-..-.- -...+|-|-.++|||+-+-+ + .+.+.. +|. +.+.-.+|+++|--|+.-..|+-+
T Consensus 225 ~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd~v---~-GLQV~~----~g~Wi~V~p~pga~VVNvGD~Lq~~SNG 296 (374)
T PLN02947 225 QMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDEV---E-GLQIMH----AGRWVTVEPIPGSFVVNVGDHLEIFSNG 296 (374)
T ss_pred eeeeeecCCCCCCcccccCCCCccCCCceEEEEecCC---C-CeeEeE----CCEEEeCCCCCCeEEEEeCceeeeeeCC
Confidence 3567899988321110 12567766668888765321 2 122221 234 888889999999999999999854
Q ss_pred c---------CCCCCceEEEEEEee
Q 008986 402 M---------CPSPNKRISITFFRV 417 (547)
Q Consensus 402 I---------Ppvr~rRISITFRkv 417 (547)
. .+..+.|+||.|.--
T Consensus 297 ~~kS~~HRVv~~~~~~R~Sia~F~~ 321 (374)
T PLN02947 297 RYKSVLHRVRVNSTKPRISVASLHS 321 (374)
T ss_pred EEeccccccccCCCCCEEEEEEEec
Confidence 4 223457999999753
No 28
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=30.87 E-value=49 Score=30.95 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=39.7
Q ss_pred hhhhhHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHhhcccchhhhhhhhcccHHHHH
Q 008986 46 FAAANAIIDALCGHLAEVRGGGGIGSGYEKVFAAIHRRRMNWISVLQMQKYHSIAEVT 103 (547)
Q Consensus 46 FAAANAIID~lc~HL~~v~~~~~~p~eyd~V~~ai~qRR~nW~~VlhMQqy~sv~dV~ 103 (547)
|---=|.|-.+|.-|..+= ..-|..||--|=+-=-|+|.|||.-|+-
T Consensus 73 fmTlVaLIgTMCgILgTiI-----------fahcqkq~dSnkTvpqql~dyysl~~~~ 119 (130)
T PF02960_consen 73 FMTLVALIGTMCGILGTII-----------FAHCQKQRDSNKTVPQQLRDYYSLHDLC 119 (130)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHhcccccccccchHHHHhhhhHhHhh
Confidence 4445689999999998876 5678999999998889999999998864
No 29
>PLN02276 gibberellin 20-oxidase
Probab=24.43 E-value=1.6e+02 Score=31.58 Aligned_cols=96 Identities=23% Similarity=0.306 Sum_probs=59.4
Q ss_pred CeEEeeecCCCCCCCC-CCCCCCCCCceEEEEccccccccccccccCCCCCccee-EEEEecCCeEEEEecCccccccee
Q 008986 324 NGCIINFFDEAEYSQP-FLKPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNYKGQ-LMLSLKEGSLVVMRGNSADTARHV 401 (547)
Q Consensus 324 DqcIINeY~pGqgI~P-H~dpPHfD~PIvtLLLSec~M~FGr~~~~~~~Ge~~g~-l~L~Lp~GSLLVMsG~SRd~WkHa 401 (547)
..+-+|.|.+-....- ....+|-|--++|||+.+. -+ .+.+.. .|. +.+.-.+|+++|--|+.-..|+.+
T Consensus 206 ~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~---v~-GLQV~~----~g~Wi~V~p~pgalVVNiGD~L~~~TNG 277 (361)
T PLN02276 206 SIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQ---VG-GLQVFV----DNKWRSVRPRPGALVVNIGDTFMALSNG 277 (361)
T ss_pred ceeeeEeCCCCCCcccccCCccccCCceeEEEEecC---CC-ceEEEE----CCEEEEcCCCCCeEEEEcHHHHHHHhCC
Confidence 4567899987422111 2256777666777866432 11 122221 234 888889999999999999888766
Q ss_pred cCC---------CCCceEEEEEEeecCCCCCCCCCC
Q 008986 402 MCP---------SPNKRISITFFRVRPESNQSQSPP 428 (547)
Q Consensus 402 IPp---------vr~rRISITFRkvrp~~~~~~~p~ 428 (547)
.=+ ....|+||.|.- .|.......|+
T Consensus 278 ~~kSt~HRVv~~~~~~R~Sia~F~-~P~~d~~i~pl 312 (361)
T PLN02276 278 RYKSCLHRAVVNSERERRSLAFFL-CPKEDKVVRPP 312 (361)
T ss_pred ccccccceeecCCCCCEEEEEEEe-cCCCCCEEeCC
Confidence 532 246799999975 34444333443
No 30
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=23.33 E-value=28 Score=38.35 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHhhhCCCCCCCchhHHHHHHHhhcccchhhhhhhhccc--HHHHHHHH
Q 008986 49 ANAIIDALCGHLAEVRGGGGIGSGYEKVFAAIHRRRMNWISVLQMQKYHS--IAEVTLEL 106 (547)
Q Consensus 49 ANAIID~lc~HL~~v~~~~~~p~eyd~V~~ai~qRR~nW~~VlhMQqy~s--v~dV~~~L 106 (547)
...+||++|.+|-. .|..|| |+.+-.+|= ++|++.+|
T Consensus 271 ~~~~vDa~~~~lv~------~P~~fD---------------VIvt~NlfGDILSDlaa~l 309 (409)
T PRK07006 271 KDSIADAFLQQILL------RPAEYD---------------VIATMNLNGDYISDALAAQ 309 (409)
T ss_pred ehHHHHHHHHHHhh------CcccCc---------------EEEEcCcccchhhHHHHHh
Confidence 45799999998876 888887 445566663 56666555
No 31
>PLN02704 flavonol synthase
Probab=21.91 E-value=1.8e+02 Score=30.79 Aligned_cols=94 Identities=18% Similarity=0.230 Sum_probs=55.5
Q ss_pred EEeeecCCCCCCCCCC-CCCCCCCceEEEEccccccccccccccCCCCCccee-EEEEecCCeEEEEecCcccccceecC
Q 008986 326 CIINFFDEAEYSQPFL-KPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNYKGQ-LMLSLKEGSLVVMRGNSADTARHVMC 403 (547)
Q Consensus 326 cIINeY~pGqgI~PH~-dpPHfD~PIvtLLLSec~M~FGr~~~~~~~Ge~~g~-l~L~Lp~GSLLVMsG~SRd~WkHaIP 403 (547)
+-+|+|.+-....... ..+|-|--++|||+-+- -+ .+.+.. .|. +.+.-.+|+++|.-|+.=..|+-+.=
T Consensus 201 lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~---v~-GLQV~~----~g~Wi~V~p~pg~lvVNvGD~L~~~TNg~~ 272 (335)
T PLN02704 201 LKINYYPPCPRPDLALGVVAHTDMSAITILVPNE---VQ-GLQVFR----DDHWFDVKYIPNALVIHIGDQIEILSNGKY 272 (335)
T ss_pred hhhhcCCCCCCcccccCccCccCCcceEEEecCC---CC-ceeEeE----CCEEEeCCCCCCeEEEEechHHHHHhCCee
Confidence 4568887622111111 56776666787765321 11 111111 234 78888999999999999999986542
Q ss_pred ---------CCCCceEEEEEEeecCCCCCCCCCC
Q 008986 404 ---------PSPNKRISITFFRVRPESNQSQSPP 428 (547)
Q Consensus 404 ---------pvr~rRISITFRkvrp~~~~~~~p~ 428 (547)
+....|+||.|.-- |+......|+
T Consensus 273 kSt~HRVv~~~~~~R~Si~~F~~-p~~d~~i~pl 305 (335)
T PLN02704 273 KSVLHRTTVNKEKTRMSWPVFLE-PPSELAVGPL 305 (335)
T ss_pred ecccceeecCCCCCeEEEEEEec-CCCCceEeCC
Confidence 22457999999753 3333333444
No 32
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.90 E-value=1.7e+02 Score=35.41 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=11.1
Q ss_pred HHHHHHhhc--ccchhhhhhhhc
Q 008986 76 VFAAIHRRR--MNWISVLQMQKY 96 (547)
Q Consensus 76 V~~ai~qRR--~nW~~VlhMQqy 96 (547)
+..||.-=| ++=+||--.|+|
T Consensus 158 l~~CleslRVsL~~npVSwvn~F 180 (1102)
T KOG1924|consen 158 LLECLESLRVSLTSNPVSWVNKF 180 (1102)
T ss_pred HHHHHHHHhhhhcCCccHHHHHh
Confidence 555665444 344555555554
No 33
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=21.22 E-value=2.8e+02 Score=29.70 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=53.9
Q ss_pred CeEEeeecCCCCCCCCCC-CCCCCCCceEEEEccccccccccccccCCCCCccee-EEEEecCCeEEEEecCcccccc--
Q 008986 324 NGCIINFFDEAEYSQPFL-KPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNYKGQ-LMLSLKEGSLVVMRGNSADTAR-- 399 (547)
Q Consensus 324 DqcIINeY~pGqgI~PH~-dpPHfD~PIvtLLLSec~M~FGr~~~~~~~Ge~~g~-l~L~Lp~GSLLVMsG~SRd~Wk-- 399 (547)
...-+|.|.+-....-.. ..+|=|--++|||+.+-+ + .+.+.. .|. +.+.-.+|+++|.-|+.=..|+
T Consensus 200 ~~lRl~~YPp~~~~~~~~g~~aHTD~g~lTlL~Qd~v---~-GLQV~~----~g~Wv~V~p~pgalVVNiGD~Le~wTNg 271 (341)
T PLN02984 200 GVIRVYRYPQCSNEAEAPGMEVHTDSSVISILNQDEV---G-GLEVMK----DGEWFNVKPIANTLVVNLGDMMQVISDD 271 (341)
T ss_pred ceEEEEeCCCCCCcccccCccCccCCCceEEEEeCCC---C-CeeEee----CCceEECCCCCCeEEEECChhhhhhcCC
Confidence 467889997732111011 556655557777654211 1 122221 234 7888899999999999999998
Q ss_pred ------eec--CCCCCceEEEEEEe
Q 008986 400 ------HVM--CPSPNKRISITFFR 416 (547)
Q Consensus 400 ------HaI--Ppvr~rRISITFRk 416 (547)
|-+ +.....|+||-|.-
T Consensus 272 ~~kSt~HRVv~~~~~~~R~Sia~F~ 296 (341)
T PLN02984 272 EYKSVLHRVGKRNKKKERYSICYFV 296 (341)
T ss_pred eeeCCCCccccCCCCCCeEEEEEEe
Confidence 666 23346799999873
Done!