Query 008988
Match_columns 547
No_of_seqs 197 out of 688
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 19:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 4E-114 9E-119 908.9 38.7 369 177-547 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 96.9 0.038 8.2E-07 55.5 15.6 190 258-501 33-226 (247)
3 TIGR02752 MenG_heptapren 2-hep 96.0 0.39 8.4E-06 47.1 16.5 114 273-417 35-151 (231)
4 TIGR02716 C20_methyl_CrtF C-20 95.7 0.25 5.3E-06 51.1 14.5 117 272-421 138-258 (306)
5 PF01209 Ubie_methyltran: ubiE 95.4 0.073 1.6E-06 53.6 9.0 181 274-505 38-220 (233)
6 TIGR00740 methyltransferase, p 95.3 0.86 1.9E-05 45.2 16.2 107 283-417 53-161 (239)
7 PF13489 Methyltransf_23: Meth 93.5 0.57 1.2E-05 42.3 9.4 98 281-420 20-118 (161)
8 PRK06202 hypothetical protein; 93.2 1.9 4E-05 42.6 13.3 107 282-416 59-165 (232)
9 PRK14103 trans-aconitate 2-met 93.1 1.4 3E-05 44.2 12.4 106 274-417 20-125 (255)
10 PRK08317 hypothetical protein; 92.5 6.3 0.00014 37.8 15.7 115 275-419 11-126 (241)
11 PLN02233 ubiquinone biosynthes 92.5 6 0.00013 40.3 16.1 132 273-432 63-195 (261)
12 PF13847 Methyltransf_31: Meth 91.5 1.8 3.9E-05 39.8 10.0 105 283-416 3-108 (152)
13 PLN02336 phosphoethanolamine N 91.4 10 0.00023 41.5 17.6 114 272-417 255-368 (475)
14 smart00138 MeTrc Methyltransfe 91.1 0.34 7.4E-06 49.5 5.3 44 281-324 97-142 (264)
15 TIGR01934 MenG_MenH_UbiE ubiqu 91.0 15 0.00032 35.1 16.8 117 272-419 28-145 (223)
16 TIGR02072 BioC biotin biosynth 90.7 16 0.00035 35.2 16.4 47 486-536 186-232 (240)
17 TIGR00477 tehB tellurite resis 90.7 2.5 5.4E-05 41.0 10.7 111 270-413 17-128 (195)
18 PF13649 Methyltransf_25: Meth 90.6 0.76 1.7E-05 39.2 6.2 97 287-410 1-99 (101)
19 COG2226 UbiE Methylase involve 90.0 17 0.00036 37.2 16.2 189 261-502 28-221 (238)
20 PRK00216 ubiE ubiquinone/menaq 89.8 15 0.00033 35.4 15.4 44 275-324 43-86 (239)
21 PTZ00098 phosphoethanolamine N 88.9 12 0.00025 38.2 14.3 51 266-324 35-85 (263)
22 PLN02396 hexaprenyldihydroxybe 87.2 6.5 0.00014 41.7 11.6 99 285-417 133-234 (322)
23 PRK12335 tellurite resistance 85.1 11 0.00023 38.8 11.7 95 286-413 123-218 (287)
24 PF00891 Methyltransf_2: O-met 85.0 6.3 0.00014 39.1 9.7 108 273-419 90-201 (241)
25 PF09243 Rsm22: Mitochondrial 84.8 3.3 7.2E-05 42.7 7.8 137 267-435 13-156 (274)
26 PRK05785 hypothetical protein; 84.6 15 0.00032 36.7 12.1 93 284-417 52-145 (226)
27 TIGR02081 metW methionine bios 84.4 14 0.00031 35.4 11.5 40 274-323 6-45 (194)
28 PRK11207 tellurite resistance 83.1 17 0.00038 35.2 11.6 111 271-414 18-130 (197)
29 PRK11036 putative S-adenosyl-L 81.1 13 0.00027 37.4 10.2 111 274-415 36-146 (255)
30 PRK01683 trans-aconitate 2-met 80.8 20 0.00043 35.8 11.4 111 271-417 19-129 (258)
31 PLN02244 tocopherol O-methyltr 80.6 34 0.00074 36.2 13.7 101 284-417 119-223 (340)
32 PF12847 Methyltransf_18: Meth 80.6 3.9 8.4E-05 34.9 5.5 106 286-417 4-110 (112)
33 TIGR03438 probable methyltrans 80.5 15 0.00032 38.2 10.7 118 274-416 56-175 (301)
34 TIGR02021 BchM-ChlM magnesium 79.7 19 0.00041 35.2 10.6 50 266-324 36-87 (219)
35 PRK05134 bifunctional 3-demeth 79.6 46 0.00099 32.6 13.4 103 282-416 47-149 (233)
36 PLN02336 phosphoethanolamine N 79.5 14 0.00031 40.4 10.8 113 273-416 27-140 (475)
37 TIGR03587 Pse_Me-ase pseudamin 79.1 29 0.00064 34.1 11.8 99 286-419 46-144 (204)
38 PF03848 TehB: Tellurite resis 78.5 24 0.00053 34.9 10.9 111 273-416 20-131 (192)
39 PF13679 Methyltransf_32: Meth 76.6 10 0.00023 34.8 7.4 43 279-324 21-63 (141)
40 PLN02585 magnesium protoporphy 75.4 21 0.00046 37.8 10.2 103 283-416 144-248 (315)
41 PF08241 Methyltransf_11: Meth 74.9 16 0.00035 29.5 7.4 94 288-415 1-94 (95)
42 COG2227 UbiG 2-polyprenyl-3-me 74.8 8.7 0.00019 39.4 6.8 100 283-416 59-159 (243)
43 PRK15068 tRNA mo(5)U34 methylt 73.8 45 0.00098 35.2 12.2 101 285-417 124-225 (322)
44 PF08242 Methyltransf_12: Meth 73.5 1.3 2.8E-05 37.4 0.5 32 288-326 1-32 (99)
45 PLN02232 ubiquinone biosynthes 70.5 48 0.001 31.1 10.4 34 377-418 47-82 (160)
46 PRK06922 hypothetical protein; 69.3 30 0.00065 40.4 10.2 112 285-418 420-538 (677)
47 COG4106 Tam Trans-aconitate me 67.7 15 0.00034 37.5 6.6 110 279-425 26-136 (257)
48 PRK10258 biotin biosynthesis p 66.3 1.2E+02 0.0025 30.2 12.7 45 271-324 30-74 (251)
49 COG2242 CobL Precorrin-6B meth 65.9 8 0.00017 38.2 4.2 51 278-344 29-82 (187)
50 PRK11705 cyclopropane fatty ac 62.6 66 0.0014 34.9 10.8 45 272-324 156-200 (383)
51 TIGR00452 methyltransferase, p 60.6 96 0.0021 32.9 11.4 43 274-324 112-154 (314)
52 PRK10909 rsmD 16S rRNA m(2)G96 60.2 1.3E+02 0.0028 29.7 11.6 106 285-423 55-164 (199)
53 PRK00121 trmB tRNA (guanine-N( 59.1 66 0.0014 31.3 9.3 35 283-324 40-74 (202)
54 PRK07580 Mg-protoporphyrin IX 58.1 85 0.0018 30.4 9.9 98 283-415 63-163 (230)
55 TIGR01983 UbiG ubiquinone bios 58.1 1.8E+02 0.0039 28.0 13.1 100 284-416 46-147 (224)
56 PRK09489 rsmC 16S ribosomal RN 57.7 94 0.002 33.3 10.8 113 273-414 186-299 (342)
57 smart00828 PKS_MT Methyltransf 57.3 64 0.0014 31.3 8.9 101 286-417 2-104 (224)
58 PRK13255 thiopurine S-methyltr 56.5 1.6E+02 0.0035 29.3 11.7 115 285-427 39-168 (218)
59 TIGR00138 gidB 16S rRNA methyl 55.3 1.6E+02 0.0034 28.4 11.0 96 285-417 44-141 (181)
60 PRK00107 gidB 16S rRNA methylt 53.0 2.3E+02 0.0049 27.6 11.8 96 285-417 47-144 (187)
61 smart00650 rADc Ribosomal RNA 52.6 1.2E+02 0.0025 28.5 9.5 42 274-324 4-45 (169)
62 PRK11873 arsM arsenite S-adeno 51.3 2.3E+02 0.0049 28.5 12.0 101 285-417 79-183 (272)
63 TIGR03439 methyl_EasF probable 50.7 1.9E+02 0.004 30.9 11.6 150 274-444 69-234 (319)
64 PF07521 RMMBL: RNA-metabolisi 49.7 31 0.00067 25.7 4.1 39 374-418 1-40 (43)
65 TIGR00091 tRNA (guanine-N(7)-) 48.9 1.2E+02 0.0027 29.2 9.2 129 285-437 18-147 (194)
66 PF02353 CMAS: Mycolic acid cy 48.3 1.6E+02 0.0035 30.4 10.5 114 272-417 51-165 (273)
67 TIGR03840 TMPT_Se_Te thiopurin 48.1 1.9E+02 0.0042 28.7 10.6 31 285-324 36-66 (213)
68 COG0075 Serine-pyruvate aminot 46.7 75 0.0016 34.8 8.0 152 336-502 91-290 (383)
69 PF07522 DRMBL: DNA repair met 46.0 80 0.0017 27.9 6.9 33 372-414 71-103 (110)
70 PRK15001 SAM-dependent 23S rib 44.5 95 0.0021 33.9 8.4 120 274-417 219-339 (378)
71 PRK14968 putative methyltransf 42.7 2.8E+02 0.006 25.6 12.5 33 283-324 23-55 (188)
72 TIGR03534 RF_mod_PrmC protein- 40.8 2.3E+02 0.005 27.6 10.0 78 284-384 88-166 (251)
73 PRK03522 rumB 23S rRNA methylu 40.6 3.7E+02 0.0081 28.0 11.9 98 285-417 175-273 (315)
74 PRK00274 ksgA 16S ribosomal RN 39.6 97 0.0021 31.7 7.3 57 259-324 13-74 (272)
75 TIGR01626 ytfJ_HI0045 conserve 39.3 1E+02 0.0022 30.4 7.0 113 283-408 59-182 (184)
76 KOG4300 Predicted methyltransf 37.2 2.9E+02 0.0063 28.4 9.8 120 282-434 75-197 (252)
77 PRK13168 rumA 23S rRNA m(5)U19 35.3 4.1E+02 0.009 29.2 11.8 101 282-417 296-399 (443)
78 TIGR02085 meth_trns_rumB 23S r 35.2 4.7E+02 0.01 28.1 12.0 97 286-417 236-333 (374)
79 PLN02490 MPBQ/MSBQ methyltrans 34.3 2.7E+02 0.0058 30.0 9.8 35 283-324 113-147 (340)
80 COG0123 AcuC Deacetylases, inc 34.0 27 0.00059 37.5 2.3 40 374-416 206-246 (340)
81 KOG3178 Hydroxyindole-O-methyl 33.6 47 0.001 35.8 3.9 90 372-503 236-328 (342)
82 PF04244 DPRP: Deoxyribodipyri 33.1 91 0.002 31.6 5.7 83 260-355 36-124 (224)
83 COG1500 Predicted exosome subu 31.6 1.2E+02 0.0025 31.2 6.1 79 436-517 71-152 (234)
84 PLN02446 (5-phosphoribosyl)-5- 31.2 54 0.0012 34.1 3.8 27 280-307 55-81 (262)
85 PTZ00063 histone deacetylase; 30.6 34 0.00075 38.0 2.4 149 274-442 156-316 (436)
86 PF03291 Pox_MCEL: mRNA cappin 30.1 4.6E+02 0.01 28.0 10.7 113 283-413 62-181 (331)
87 PTZ00338 dimethyladenosine tra 29.9 2.2E+02 0.0048 29.8 8.2 42 274-324 27-68 (294)
88 PRK09328 N5-glutamine S-adenos 29.8 3E+02 0.0065 27.4 8.9 37 281-324 106-142 (275)
89 TIGR02469 CbiT precorrin-6Y C5 29.6 91 0.002 26.6 4.5 32 286-324 22-53 (124)
90 TIGR02129 hisA_euk phosphoribo 29.2 65 0.0014 33.3 4.0 26 280-309 50-75 (253)
91 PF11455 DUF3018: Protein of 28.7 34 0.00075 28.4 1.5 20 484-503 3-22 (65)
92 TIGR01716 RGG_Cterm transcript 28.6 1.1E+02 0.0024 29.5 5.4 54 177-230 127-181 (220)
93 KOG1165 Casein kinase (serine/ 28.6 29 0.00064 37.7 1.4 16 279-294 162-177 (449)
94 PLN03075 nicotianamine synthas 28.1 5.5E+02 0.012 27.2 10.7 106 286-418 126-233 (296)
95 TIGR00755 ksgA dimethyladenosi 27.9 4.8E+02 0.01 26.1 10.0 43 273-324 19-61 (253)
96 smart00857 Resolvase Resolvase 27.1 4.3E+02 0.0094 23.6 8.7 102 332-442 16-126 (148)
97 PRK14121 tRNA (guanine-N(7)-)- 26.7 4.3E+02 0.0093 29.1 9.9 43 275-324 114-156 (390)
98 PF15609 PRTase_2: Phosphoribo 26.3 3.4E+02 0.0074 27.1 8.2 68 280-357 119-187 (191)
99 KOG2904 Predicted methyltransf 25.5 6.4E+02 0.014 27.0 10.3 92 275-383 137-233 (328)
100 PRK11088 rrmA 23S rRNA methylt 25.2 2.4E+02 0.0052 28.6 7.3 72 247-324 51-122 (272)
101 cd01836 FeeA_FeeB_like SGNH_hy 25.2 5.6E+02 0.012 23.8 11.0 13 313-325 1-13 (191)
102 PRK09864 putative peptidase; P 24.8 1.3E+02 0.0029 32.5 5.6 75 334-410 264-343 (356)
103 PTZ00346 histone deacetylase; 24.7 50 0.0011 36.7 2.4 148 275-443 174-335 (429)
104 cd02440 AdoMet_MTases S-adenos 24.1 3.4E+02 0.0074 21.0 8.7 31 286-324 1-31 (107)
105 TIGR00563 rsmB ribosomal RNA s 23.7 9.8E+02 0.021 26.1 12.3 126 271-414 226-364 (426)
106 COG1341 Predicted GTPase or GT 23.7 4.4E+02 0.0096 29.2 9.2 81 374-469 173-253 (398)
107 TIGR00536 hemK_fam HemK family 23.1 8.2E+02 0.018 25.0 11.3 54 285-355 116-171 (284)
108 PRK11805 N5-glutamine S-adenos 21.2 7.2E+02 0.016 26.0 10.1 49 285-350 135-183 (307)
109 PF05175 MTS: Methyltransferas 21.0 1.2E+02 0.0025 28.6 3.8 117 271-414 19-136 (170)
110 COG2230 Cfa Cyclopropane fatty 20.9 7.9E+02 0.017 26.0 10.1 112 269-412 58-170 (283)
111 cd01715 ETF_alpha The electron 20.8 5.1E+02 0.011 24.2 8.2 95 331-436 11-107 (168)
112 PF04413 Glycos_transf_N: 3-De 20.7 42 0.00092 32.6 0.7 62 400-461 86-166 (186)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=4.4e-114 Score=908.94 Aligned_cols=369 Identities=46% Similarity=0.789 Sum_probs=354.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhccCCCccccccccCCCC---hHhHHHH
Q 008988 177 LKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPV---SSELMSY 253 (547)
Q Consensus 177 L~~LLl~CAeAV~~gd~~~A~~lL~~L~~~aS~~Gdp~qRlaaYF~eAL~aRl~~sg~~~y~al~~~~p~---~~ell~a 253 (547)
|++||++||+||+.||.+.|+.+|++|++++|++|+|+||||+||+|||++||.++|+.+|+++.+..++ ..+.+.+
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999887655443 5678888
Q ss_pred HHHHHhhCchhhHHHHHHHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchH
Q 008988 254 MSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGL 333 (547)
Q Consensus 254 ~~~l~e~sP~~kFa~~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L 333 (547)
+++||++|||+||||||||||||||++|+++||||||||++|.|||+|||+||.|++|||+||||||+.|.++ ....+
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l 158 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL 158 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765 34689
Q ss_pred HHHHHHHHHHHHhCCCceEEEEe-cccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcE
Q 008988 334 DIVGKRLSEFAASCNVPFEFQDT-AMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKV 412 (547)
Q Consensus 334 ~~tG~rL~~fA~s~gvpFeF~~V-~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pkv 412 (547)
++||+||.+||+++||||||++| ..+++++++++|++++||+|||||+|+||||.++++..++||+.||+.||+|+|||
T Consensus 159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v 238 (374)
T PF03514_consen 159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV 238 (374)
T ss_pred HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence 99999999999999999999996 44567899999999999999999999999999999988899999999999999999
Q ss_pred EEEEecCCCCCCCChhHHHHHHHHHHHHHhhhhhccCCCCcHHHHHHHHHHHHHhhhhhhhcccccccccccchhhHHHH
Q 008988 413 VTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSR 492 (547)
Q Consensus 413 vtlvEqEan~ns~~F~~RF~EaL~yYsAlFDSLDa~lpr~~~eRi~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~R 492 (547)
||++|+|+|||+++|++||.|||+||+|+|||||+++|+++.+|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus 239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r 318 (374)
T PF03514_consen 239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR 318 (374)
T ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccccCChHHHHHHHHHHhcCC-CCcEEEecCcEEEEEECCceeEEEeecC
Q 008988 493 FMMAGFTPYRLSPLVTNAVRDVLKDYD-SNYRVEENDGALYLGWRNRAMATSSAWK 547 (547)
Q Consensus 493 ~~~AGF~~~pLS~~~~~qak~LL~~y~-~gy~v~e~~g~L~LgWk~rpL~s~SAWr 547 (547)
|.+|||+++|||+.+..|||.||+.|. +||+|++++|||+||||++||+++||||
T Consensus 319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 999999999999999999999999986 8999999999999999999999999998
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.86 E-value=0.038 Score=55.52 Aligned_cols=190 Identities=15% Similarity=0.212 Sum_probs=99.6
Q ss_pred HhhCchhhHHHHHHHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHH
Q 008988 258 FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVG 337 (547)
Q Consensus 258 ~e~sP~~kFa~~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG 337 (547)
....|.+...|-.++..+-.-+.. .-+|+|+|.|.|.--..|.+.+ ..|..++||||.+.. .++.+.
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~~--~~~vLDlGcGtG~~~~~l~~~~-----~~~~~~v~gvD~S~~------ml~~A~ 99 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQP--GTQVYDLGCSLGAATLSVRRNI-----HHDNCKIIAIDNSPA------MIERCR 99 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCCC--CCEEEEEcccCCHHHHHHHHhc-----CCCCCeEEEEeCCHH------HHHHHH
Confidence 456788877776655443332332 3479999999997433333322 125689999997642 355555
Q ss_pred HHHHHHHHhCCC--ceEEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCc-EE
Q 008988 338 KRLSEFAASCNV--PFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPK-VV 413 (547)
Q Consensus 338 ~rL~~fA~s~gv--pFeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pk-vv 413 (547)
+++.+ .++ .++|+. .+..++. .....+++. .+.|||++++ .+..+|+.+ +.|+|. ++
T Consensus 100 ~~~~~----~~~~~~v~~~~--~d~~~~~-----~~~~D~vv~--~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l 160 (247)
T PRK15451 100 RHIDA----YKAPTPVDVIE--GDIRDIA-----IENASMVVL--NFTLQFLEPS------ERQALLDKIYQGLNPGGAL 160 (247)
T ss_pred HHHHh----cCCCCCeEEEe--CChhhCC-----CCCCCEEeh--hhHHHhCCHH------HHHHHHHHHHHhcCCCCEE
Confidence 54433 333 355543 2222221 222344444 4678998642 245565555 788998 55
Q ss_pred EEEecCCCCCCCChhHHHHHHHHHHHHHhhhhhccCCCCcHHHHHHHHHHHHHhhhhhhhcccccccccccchhhHHHHH
Q 008988 414 TLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRF 493 (547)
Q Consensus 414 tlvEqEan~ns~~F~~RF~EaL~yYsAlFDSLDa~lpr~~~eRi~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~R~ 493 (547)
+++|.=.. .++..-+.+.+..+.|. .....+ . ..+++. .....| +-+.+...+...+|
T Consensus 161 ~l~e~~~~-~~~~~~~~~~~~~~~~~-----~~~g~s---~--~ei~~~--~~~~~~---------~~~~~~~~~~~~~L 218 (247)
T PRK15451 161 VLSEKFSF-EDAKVGELLFNMHHDFK-----RANGYS---E--LEISQK--RSMLEN---------VMLTDSVETHKARL 218 (247)
T ss_pred EEEEecCC-CcchhHHHHHHHHHHHH-----HHcCCC---H--HHHHHH--HHHHHh---------hcccCCHHHHHHHH
Confidence 67764222 22333344444333221 111111 1 112221 112222 33456778899999
Q ss_pred HhCCCccc
Q 008988 494 MMAGFTPY 501 (547)
Q Consensus 494 ~~AGF~~~ 501 (547)
+.|||+.+
T Consensus 219 ~~aGF~~v 226 (247)
T PRK15451 219 HKAGFEHS 226 (247)
T ss_pred HHcCchhH
Confidence 99999764
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.00 E-value=0.39 Score=47.07 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=58.7
Q ss_pred HHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-e
Q 008988 273 VVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP-F 351 (547)
Q Consensus 273 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-F 351 (547)
+.++..+.-.+.-+|+|+|.|.|.-.. .|+.+ .+|..++||||.+.. .++.+.+++. ..+++ .
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~----~la~~--~~~~~~v~gvD~s~~------~~~~a~~~~~----~~~~~~v 98 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSI----ALAEA--VGPEGHVIGLDFSEN------MLSVGRQKVK----DAGLHNV 98 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHH----HHHHH--hCCCCEEEEEECCHH------HHHHHHHHHH----hcCCCce
Confidence 445555543344579999999998333 33333 124568999997532 2444444432 33443 3
Q ss_pred EEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHH-HHHhcCCcEEE-EEe
Q 008988 352 EFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLR-LVKSLSPKVVT-LVE 417 (547)
Q Consensus 352 eF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~-~Vk~L~Pkvvt-lvE 417 (547)
+| +..+..++. +.-..=+.|+.+ +.+||+++ ...+|+ ..+.|+|.-.+ ++|
T Consensus 99 ~~--~~~d~~~~~---~~~~~fD~V~~~--~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 99 EL--VHGNAMELP---FDDNSFDYVTIG--FGLRNVPD--------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred EE--EEechhcCC---CCCCCccEEEEe--cccccCCC--------HHHHHHHHHHHcCcCeEEEEEE
Confidence 33 222222211 111111344443 56788764 234554 56888998444 444
No 4
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.73 E-value=0.25 Score=51.08 Aligned_cols=117 Identities=14% Similarity=0.124 Sum_probs=67.8
Q ss_pred HHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-
Q 008988 272 NVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP- 350 (547)
Q Consensus 272 NqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp- 350 (547)
.+.|++.+.-.+.-+|+|+|-|.|. +..+++++- |.+++|++|.|. .++.+.+ .++..|+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~~-------~~~~a~~----~~~~~gl~~ 199 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLPG-------AIDLVNE----NAAEKGVAD 199 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecHH-------HHHHHHH----HHHhCCccc
Confidence 5677777765566799999999984 344555443 678999998642 2444433 44555664
Q ss_pred -eEEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCc-EEEEEecCCC
Q 008988 351 -FEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPK-VVTLVEQESK 421 (547)
Q Consensus 351 -FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pk-vvtlvEqEan 421 (547)
++|..- +..+. .+..++++.+ ...||+..++ ....+|+.+ +.|+|. .++++|.-.+
T Consensus 200 rv~~~~~--d~~~~-----~~~~~D~v~~--~~~lh~~~~~------~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 200 RMRGIAV--DIYKE-----SYPEADAVLF--CRILYSANEQ------LSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred eEEEEec--CccCC-----CCCCCCEEEe--EhhhhcCChH------HHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 444332 22111 1122344433 3467877542 124566555 789997 5667776443
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.43 E-value=0.073 Score=53.58 Aligned_cols=181 Identities=20% Similarity=0.279 Sum_probs=68.2
Q ss_pred HHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEE
Q 008988 274 VIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEF 353 (547)
Q Consensus 274 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 353 (547)
.+++.+...+-..|+|.+.|.|.-+..| +.+.+ |.-+|||+|.+. +.|+...+++.+.... ..+|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l----~~~~~--~~~~v~~vD~s~------~ML~~a~~k~~~~~~~---~i~~ 102 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTREL----ARRVG--PNGKVVGVDISP------GMLEVARKKLKREGLQ---NIEF 102 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHH----GGGSS-----EEEEEES-H------HHHHHHHHHHHHTT-----SEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHH----HHHCC--CccEEEEecCCH------HHHHHHHHHHHhhCCC---CeeE
Confidence 3455555666679999999999655444 44322 455999999864 3567776666654322 3344
Q ss_pred EEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCc-EEEEEecCCCCCCCChhHHHH
Q 008988 354 QDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPK-VVTLVEQESKTNTSPFFHRFL 432 (547)
Q Consensus 354 ~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pk-vvtlvEqEan~ns~~F~~RF~ 432 (547)
.. . +.+.|...++..=+|-|.|.||+++| +...+=.+.|-|+|. .++++|-. ....++ +.
T Consensus 103 v~--~-----da~~lp~~d~sfD~v~~~fglrn~~d-------~~~~l~E~~RVLkPGG~l~ile~~--~p~~~~---~~ 163 (233)
T PF01209_consen 103 VQ--G-----DAEDLPFPDNSFDAVTCSFGLRNFPD-------RERALREMYRVLKPGGRLVILEFS--KPRNPL---LR 163 (233)
T ss_dssp EE--------BTTB--S-TT-EEEEEEES-GGG-SS-------HHHHHHHHHHHEEEEEEEEEEEEE--B-SSHH---HH
T ss_pred EE--c-----CHHHhcCCCCceeEEEHHhhHHhhCC-------HHHHHHHHHHHcCCCeEEEEeecc--CCCCch---hh
Confidence 32 2 23445555677778889999999976 234555666889997 34466632 222223 33
Q ss_pred HHHHHHHHHhhh-hhccCCCCcHHHHHHHHHHHHHhhhhhhhcccccccccccchhhHHHHHHhCCCccccCCh
Q 008988 433 ETLDYYTAMFES-IDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSP 505 (547)
Q Consensus 433 EaL~yYsAlFDS-LDa~lpr~~~eRi~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~R~~~AGF~~~pLS~ 505 (547)
..+.+|...+-= +..-+.++ +-. -.+|.+-|.+... -++-.+.|+.+||+.+....
T Consensus 164 ~~~~~y~~~ilP~~g~l~~~~---~~~--Y~yL~~Si~~f~~------------~~~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 164 ALYKFYFKYILPLIGRLLSGD---REA--YRYLPESIRRFPS------------PEELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp HHHHH---------------------------------------------------------------------
T ss_pred ceeeeeecccccccccccccc---ccc--ccccccccccccc------------cccccccccccccccccccc
Confidence 344455443311 11112221 111 2245555554332 23445568889998765533
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.32 E-value=0.86 Score=45.23 Aligned_cols=107 Identities=25% Similarity=0.413 Sum_probs=59.0
Q ss_pred ceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEecccccc
Q 008988 283 HIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACE 362 (547)
Q Consensus 283 ~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~e 362 (547)
..-+|+|+|.|.|. ++..|+.+-. .|..++||||.+.. .++.+.+++.++. .+.+++|.. .+..+
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~~------ml~~a~~~~~~~~--~~~~v~~~~--~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQP------MVERCRQHIAAYH--SEIPVEILC--NDIRH 117 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCHH------HHHHHHHHHHhcC--CCCCeEEEE--CChhh
Confidence 33479999999995 4445554421 25689999997542 3555555554321 123445533 22222
Q ss_pred cccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEEE-EEe
Q 008988 363 VERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVVT-LVE 417 (547)
Q Consensus 363 v~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pkvvt-lvE 417 (547)
+. .....+++ +.+.|||++++ .+..+|+.+ +.|+|.-++ +.|
T Consensus 118 ~~-----~~~~d~v~--~~~~l~~~~~~------~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 118 VE-----IKNASMVI--LNFTLQFLPPE------DRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CC-----CCCCCEEe--eecchhhCCHH------HHHHHHHHHHHhcCCCeEEEEee
Confidence 21 22233333 55678988642 244555555 778999555 444
No 7
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=93.46 E-value=0.57 Score=42.34 Aligned_cols=98 Identities=28% Similarity=0.390 Sum_probs=53.2
Q ss_pred ccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEecccc
Q 008988 281 NEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTA 360 (547)
Q Consensus 281 ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~ 360 (547)
..+.-.|+|+|.|.| .| ...|+.+ |. ++||+|..... ++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~~~~------~~~-----------~~~~~~~~~~~--- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDISPQM------IEK-----------RNVVFDNFDAQ--- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESSHHH------HHH-----------TTSEEEEEECH---
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECCHHH------Hhh-----------hhhhhhhhhhh---
Confidence 355669999999999 44 4455554 22 99999975321 111 22222222111
Q ss_pred cccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCc-EEEEEecCC
Q 008988 361 CEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPK-VVTLVEQES 420 (547)
Q Consensus 361 ~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pk-vvtlvEqEa 420 (547)
.....++-.=+|-|...|||+++ +...+-.+.+.|+|. ++++.+...
T Consensus 71 ------~~~~~~~~fD~i~~~~~l~~~~d-------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 71 ------DPPFPDGSFDLIICNDVLEHLPD-------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ------THHCHSSSEEEEEEESSGGGSSH-------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ------hhhccccchhhHhhHHHHhhccc-------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 11112334444555588999974 344444444668887 444444443
No 8
>PRK06202 hypothetical protein; Provisional
Probab=93.20 E-value=1.9 Score=42.65 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=54.9
Q ss_pred cceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEeccccc
Q 008988 282 EHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTAC 361 (547)
Q Consensus 282 e~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ 361 (547)
.+...|+|+|.|.|. +...|...+.+ ..|..+|||||.+.. .++...++. +..++.+.... . .
T Consensus 59 ~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s~~------~l~~a~~~~----~~~~~~~~~~~--~--~ 121 (232)
T PRK06202 59 DRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPDPR------AVAFARANP----RRPGVTFRQAV--S--D 121 (232)
T ss_pred CCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCCHH------HHHHHHhcc----ccCCCeEEEEe--c--c
Confidence 455789999999996 33333222221 124679999997642 233332221 12345444321 1 1
Q ss_pred ccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEE
Q 008988 362 EVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLV 416 (547)
Q Consensus 362 ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pkvvtlv 416 (547)
++ ...++..=+|-|.+.|||++++ ....+|+.+..+.-..+++.
T Consensus 122 ~l-----~~~~~~fD~V~~~~~lhh~~d~------~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 122 EL-----VAEGERFDVVTSNHFLHHLDDA------EVVRLLADSAALARRLVLHN 165 (232)
T ss_pred cc-----cccCCCccEEEECCeeecCChH------HHHHHHHHHHHhcCeeEEEe
Confidence 11 1122333334444678999763 13467777755543444443
No 9
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=93.12 E-value=1.4 Score=44.23 Aligned_cols=106 Identities=25% Similarity=0.275 Sum_probs=60.6
Q ss_pred HHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEE
Q 008988 274 VIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEF 353 (547)
Q Consensus 274 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 353 (547)
.+++.+.-...-+|+|+|.|.|. +...|+.+- |..++||||.+. ...+.|+..++.|.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~--------------~~~~~a~~~~~~~~- 77 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSP--------------EMVAAARERGVDAR- 77 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCH--------------HHHHHHHhcCCcEE-
Confidence 56676665556789999999994 455666653 346899999753 12233444455432
Q ss_pred EEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 008988 354 QDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVE 417 (547)
Q Consensus 354 ~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~PkvvtlvE 417 (547)
. .+..++ . ..+..=+|-+...|||+++ +...+-+..+.|+|.-.+++.
T Consensus 78 -~--~d~~~~-----~-~~~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 78 -T--GDVRDW-----K-PKPDTDVVVSNAALQWVPE-------HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred -E--cChhhC-----C-CCCCceEEEEehhhhhCCC-------HHHHHHHHHHhCCCCcEEEEE
Confidence 2 111111 1 1122223334456799875 334444556889999665554
No 10
>PRK08317 hypothetical protein; Provisional
Probab=92.54 E-value=6.3 Score=37.83 Aligned_cols=115 Identities=24% Similarity=0.278 Sum_probs=58.6
Q ss_pred HHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEE
Q 008988 275 IGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQ 354 (547)
Q Consensus 275 ILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~ 354 (547)
+++.+.-...-+|+|+|.|.|. |. ..++.+- +|.-++|||+.+.. .++...++ ....+...+|.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~---~~~a~~~--~~~~~v~~~d~~~~------~~~~a~~~----~~~~~~~~~~~ 74 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DA---RELARRV--GPEGRVVGIDRSEA------MLALAKER----AAGLGPNVEFV 74 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HH---HHHHHhc--CCCcEEEEEeCCHH------HHHHHHHH----hhCCCCceEEE
Confidence 5566665556689999999874 33 3344432 24569999997542 23333322 11122334443
Q ss_pred EecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEE-EEEecC
Q 008988 355 DTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVV-TLVEQE 419 (547)
Q Consensus 355 ~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pkvv-tlvEqE 419 (547)
.... .+ +....+..=+|-+...+||+++ +...+=+..+.|+|.-. +++|.+
T Consensus 75 ~~d~--~~-----~~~~~~~~D~v~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 75 RGDA--DG-----LPFPDGSFDAVRSDRVLQHLED-------PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred eccc--cc-----CCCCCCCceEEEEechhhccCC-------HHHHHHHHHHHhcCCcEEEEEecC
Confidence 3211 11 1112222223334456788864 23344455577899854 455543
No 11
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=92.46 E-value=6 Score=40.28 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=71.2
Q ss_pred HHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceE
Q 008988 273 VVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFE 352 (547)
Q Consensus 273 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 352 (547)
..+++.+.-.+.-+|+|+|.|.|. +...|+.+. +|.-+|||||.+. +.++.+.++....++...-..+
T Consensus 63 ~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~------~ml~~A~~r~~~~~~~~~~~i~ 130 (261)
T PLN02233 63 RMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSS------EQLAVAASRQELKAKSCYKNIE 130 (261)
T ss_pred HHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCH------HHHHHHHHHhhhhhhccCCCeE
Confidence 334444433345589999999997 334555542 2345999999764 2456655554322222222344
Q ss_pred EEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCc-EEEEEecCCCCCCCChhHHH
Q 008988 353 FQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPK-VVTLVEQESKTNTSPFFHRF 431 (547)
Q Consensus 353 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pk-vvtlvEqEan~ns~~F~~RF 431 (547)
|... + ...+...++..=+|-+.+.|||+++ +...+-.+.|-|+|. .++++|- .....+|...+
T Consensus 131 ~~~~--d-----~~~lp~~~~sfD~V~~~~~l~~~~d-------~~~~l~ei~rvLkpGG~l~i~d~--~~~~~~~~~~~ 194 (261)
T PLN02233 131 WIEG--D-----ATDLPFDDCYFDAITMGYGLRNVVD-------RLKAMQEMYRVLKPGSRVSILDF--NKSTQPFTTSM 194 (261)
T ss_pred EEEc--c-----cccCCCCCCCEeEEEEecccccCCC-------HHHHHHHHHHHcCcCcEEEEEEC--CCCCcHHHHHH
Confidence 4332 1 1223333343434556678899864 334444555889998 4445553 33344565555
Q ss_pred H
Q 008988 432 L 432 (547)
Q Consensus 432 ~ 432 (547)
.
T Consensus 195 ~ 195 (261)
T PLN02233 195 Q 195 (261)
T ss_pred H
Confidence 4
No 12
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=91.48 E-value=1.8 Score=39.75 Aligned_cols=105 Identities=22% Similarity=0.313 Sum_probs=61.4
Q ss_pred ceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-eEEEEeccccc
Q 008988 283 HIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP-FEFQDTAMTAC 361 (547)
Q Consensus 283 ~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~ 361 (547)
+..+|+|+|.|.|..=..|.+.+ .|..+|||||.+. ++-++..+.++..+++ .+|.... ..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s~----------~~i~~a~~~~~~~~~~ni~~~~~d--~~ 64 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDISE----------EMIEYAKKRAKELGLDNIEFIQGD--IE 64 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESSH----------HHHHHHHHHHHHTTSTTEEEEESB--TT
T ss_pred CCCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECcH----------HHHHHhhcccccccccccceEEee--hh
Confidence 45789999999986544444322 1345699999753 2334555677788887 6665533 23
Q ss_pred ccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEE
Q 008988 362 EVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLV 416 (547)
Q Consensus 362 ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pkvvtlv 416 (547)
++... +. +.+=+|.+...|||+.+ +...+-++.+.|+|.-++++
T Consensus 65 ~l~~~-~~---~~~D~I~~~~~l~~~~~-------~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 65 DLPQE-LE---EKFDIIISNGVLHHFPD-------PEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp CGCGC-SS---TTEEEEEEESTGGGTSH-------HHHHHHHHHHHEEEEEEEEE
T ss_pred ccccc-cC---CCeeEEEEcCchhhccC-------HHHHHHHHHHHcCCCcEEEE
Confidence 33211 22 33333444455587753 34455566788999865543
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.44 E-value=10 Score=41.53 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=63.6
Q ss_pred HHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCce
Q 008988 272 NVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPF 351 (547)
Q Consensus 272 NqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpF 351 (547)
...+++.+.-.+.-+|+|+|.|.|. +...||.+.+ .++||||.+.. .++.+.++ +...+...
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~~------~l~~A~~~----~~~~~~~v 316 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSVN------MISFALER----AIGRKCSV 316 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCHH------HHHHHHHH----hhcCCCce
Confidence 3556666543344589999999995 3445666553 48999997642 24443332 22334455
Q ss_pred EEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 008988 352 EFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVE 417 (547)
Q Consensus 352 eF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~PkvvtlvE 417 (547)
+|...... + +.+.++..=+|-|...++|+++ +...+-.+.+.|+|.-.+++.
T Consensus 317 ~~~~~d~~--~-----~~~~~~~fD~I~s~~~l~h~~d-------~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 317 EFEVADCT--K-----KTYPDNSFDVIYSRDTILHIQD-------KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEEEcCcc--c-----CCCCCCCEEEEEECCcccccCC-------HHHHHHHHHHHcCCCeEEEEE
Confidence 66443221 1 1112232334445567888864 333444555788999665544
No 14
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=91.15 E-value=0.34 Score=49.53 Aligned_cols=44 Identities=20% Similarity=0.131 Sum_probs=32.3
Q ss_pred ccceeEEEEecccCccchHHHHHHHhcCCC--CCCeEEEEeecCCC
Q 008988 281 NEHIIHIIDFQIAQGTQWMFLLHALAKRPG--GSPLVRITGIDDSQ 324 (547)
Q Consensus 281 ge~rVHIIDf~I~~G~QWpsLiqaLA~Rpg--gPP~LRITgI~~~~ 324 (547)
..+.++|.|.|.+.|--.-+|--.|+..-. ..+.++|+|+|.+.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~ 142 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL 142 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH
Confidence 445799999999999887777655554321 23478999999765
No 15
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=91.03 E-value=15 Score=35.12 Aligned_cols=117 Identities=20% Similarity=0.225 Sum_probs=61.1
Q ss_pred HHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCce
Q 008988 272 NVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPF 351 (547)
Q Consensus 272 NqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpF 351 (547)
-..+++.+.......|+|+|.+.|. +...++.+ +|+..+++||+.+.. .++.+.+++. .+-..
T Consensus 28 ~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~~~------~~~~~~~~~~-----~~~~i 90 (223)
T TIGR01934 28 RRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFSSE------MLEVAKKKSE-----LPLNI 90 (223)
T ss_pred HHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECCHH------HHHHHHHHhc-----cCCCc
Confidence 3455666655567799999999985 23344433 233478999997531 2344433332 22233
Q ss_pred EEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEE-EEEecC
Q 008988 352 EFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVV-TLVEQE 419 (547)
Q Consensus 352 eF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pkvv-tlvEqE 419 (547)
.|... +..+.. ..++..=+|-+.+.+||+.+ +...+-+..+.|+|.-. ++++..
T Consensus 91 ~~~~~--d~~~~~-----~~~~~~D~i~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 91 EFIQA--DAEALP-----FEDNSFDAVTIAFGLRNVTD-------IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred eEEec--chhcCC-----CCCCcEEEEEEeeeeCCccc-------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 44332 212211 12233334445567788754 23334445567788844 455543
No 16
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=90.75 E-value=16 Score=35.15 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=27.8
Q ss_pred hhhHHHHHHhCCCccccCChHHHHHHHHHHhcCCCCcEEEecCcEEEEEEC
Q 008988 486 LGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWR 536 (547)
Q Consensus 486 ~~~Wr~R~~~AGF~~~pLS~~~~~qak~LL~~y~~gy~v~e~~g~L~LgWk 536 (547)
....-..++..|....+.........+.+++.|...|. .+| +.+.|+
T Consensus 186 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g-i~~~~~ 232 (240)
T TIGR02072 186 PLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQ---PDG-LPLTYH 232 (240)
T ss_pred HHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHHHhhc---CCC-ceeEEE
Confidence 34455556677776665544444556677777655553 255 777773
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.74 E-value=2.5 Score=40.98 Aligned_cols=111 Identities=14% Similarity=0.223 Sum_probs=64.1
Q ss_pred HHHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCC
Q 008988 270 SANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNV 349 (547)
Q Consensus 270 tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv 349 (547)
++...|++++.-...-+|+|+|.|.|.--. .||.+ | .++||||.+.. .++ .+.+.++..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g----~~V~~iD~s~~------~l~----~a~~~~~~~~~ 77 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G----YDVRAWDHNPA------SIA----SVLDMKARENL 77 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C----CeEEEEECCHH------HHH----HHHHHHHHhCC
Confidence 456788888876556799999999997443 33444 2 48999997532 233 33445556677
Q ss_pred ceEEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEE
Q 008988 350 PFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVV 413 (547)
Q Consensus 350 pFeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pkvv 413 (547)
+..+...... ... +. ..=+.|+.+ +.+||+.+ +.+..+++.+ +.|+|.-.
T Consensus 78 ~v~~~~~d~~--~~~---~~-~~fD~I~~~--~~~~~~~~------~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 78 PLRTDAYDIN--AAA---LN-EDYDFIFST--VVFMFLQA------GRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CceeEeccch--hcc---cc-CCCCEEEEe--cccccCCH------HHHHHHHHHHHHHhCCCcE
Confidence 7554433221 111 11 112334333 35688753 2355666665 67899954
No 18
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=90.59 E-value=0.76 Score=39.24 Aligned_cols=97 Identities=28% Similarity=0.415 Sum_probs=51.6
Q ss_pred EEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEecccccccccc
Q 008988 287 IIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQ 366 (547)
Q Consensus 287 IIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~~~ 366 (547)
|+|+|.|.|.-=..|.+.+ .+ | |..++||||-+.. .++.+.++. +..+++.+|... +..+
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~--~-~~~~~~gvD~s~~------~l~~~~~~~----~~~~~~~~~~~~--D~~~---- 60 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA--G-PSSRVIGVDISPE------MLELAKKRF----SEDGPKVRFVQA--DARD---- 60 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HH------HHHHHHHHS----HHTTTTSEEEES--CTTC----
T ss_pred CEEeecCCcHHHHHHHHHh-hh--c-ccceEEEEECCHH------HHHHHHHhc----hhcCCceEEEEC--CHhH----
Confidence 7999999998777777766 22 2 5699999997542 344444333 335667777433 2222
Q ss_pred cccccCCce-EEEeecccccCCCCCCccccchHHHHHHHHH-hcCC
Q 008988 367 HLRVQPGEA-VVVNFPFVLHHMPDESVSTENHRDRLLRLVK-SLSP 410 (547)
Q Consensus 367 ~L~i~~gEa-LaVN~~~~LHhl~desvs~~n~rd~~L~~Vk-~L~P 410 (547)
+....+.. +||.+...+||+.+ ..+..+|+.+. -|+|
T Consensus 61 -l~~~~~~~D~v~~~~~~~~~~~~------~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 61 -LPFSDGKFDLVVCSGLSLHHLSP------EELEALLRRIARLLRP 99 (101)
T ss_dssp -HHHHSSSEEEEEE-TTGGGGSSH------HHHHHHHHHHHHTEEE
T ss_pred -CcccCCCeeEEEEcCCccCCCCH------HHHHHHHHHHHHHhCC
Confidence 22223333 44554556889764 23456666553 3344
No 19
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=89.97 E-value=17 Score=37.21 Aligned_cols=189 Identities=21% Similarity=0.234 Sum_probs=106.5
Q ss_pred CchhhHHH-HHHHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHH
Q 008988 261 CPYWKFAY-MSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKR 339 (547)
Q Consensus 261 sP~~kFa~-~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~r 339 (547)
.+++.|+. .+=+++..+.+.-.+--+|+|.+.|-|-. . -.|+++-| .-+|||+|.+. ..|+...+|
T Consensus 28 n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~-a---~~~~k~~g---~g~v~~~D~s~------~ML~~a~~k 94 (238)
T COG2226 28 NDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDM-A---LLLAKSVG---TGEVVGLDISE------SMLEVAREK 94 (238)
T ss_pred cccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHH-H---HHHHHhcC---CceEEEEECCH------HHHHHHHHH
Confidence 45555553 55567777766544678999999988753 2 23444433 78999999865 256666665
Q ss_pred HHHHHHhCCCc-eEEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHH-HHHhcCCcEEEEEe
Q 008988 340 LSEFAASCNVP-FEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLR-LVKSLSPKVVTLVE 417 (547)
Q Consensus 340 L~~fA~s~gvp-FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~-~Vk~L~PkvvtlvE 417 (547)
+.+ .|+- ++|. ..+ .+.|...+.-.=+|.+.|.||+++| .+..|+ +-|=|+|...++|=
T Consensus 95 ~~~----~~~~~i~fv--~~d-----Ae~LPf~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 95 LKK----KGVQNVEFV--VGD-----AENLPFPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hhc----cCccceEEE--Eec-----hhhCCCCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcCCeEEEEE
Confidence 543 2322 4443 222 3445555566667888899999986 455555 44788999765443
Q ss_pred cCCCCCCCChhHHHHHHHH-HHHH-HhhhhhccCCCCcHHHHHHHHHHHHHhhhhhhhcccccccccccchhhHHHHHHh
Q 008988 418 QESKTNTSPFFHRFLETLD-YYTA-MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMM 495 (547)
Q Consensus 418 qEan~ns~~F~~RF~EaL~-yYsA-lFDSLDa~lpr~~~eRi~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~R~~~ 495 (547)
.=.....+ -|...++ ||.. ++=.+......+..+.. +|..-| +++-..+.-...|..
T Consensus 156 e~~~p~~~----~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~-----yL~eSi------------~~~p~~~~l~~~~~~ 214 (238)
T COG2226 156 EFSKPDNP----VLRKAYILYYFKYVLPLIGKLVAKDAEAYE-----YLAESI------------RRFPDQEELKQMIEK 214 (238)
T ss_pred EcCCCCch----hhHHHHHHHHHHhHhhhhceeeecChHHHH-----HHHHHH------------HhCCCHHHHHHHHHh
Confidence 22222222 3444444 4444 44444443332222221 233333 233344455666777
Q ss_pred CCCcccc
Q 008988 496 AGFTPYR 502 (547)
Q Consensus 496 AGF~~~p 502 (547)
+||+.+.
T Consensus 215 ~gf~~i~ 221 (238)
T COG2226 215 AGFEEVR 221 (238)
T ss_pred cCceEEe
Confidence 8887654
No 20
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=89.79 E-value=15 Score=35.44 Aligned_cols=44 Identities=20% Similarity=0.128 Sum_probs=27.3
Q ss_pred HHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 275 IGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 275 ILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
+++.+.-....+|+|+|.|.|.- ...++.+ +|+..++|++|.+.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~----~~~l~~~--~~~~~~v~~~D~s~ 86 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDL----AIALAKA--VGKTGEVVGLDFSE 86 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHH----HHHHHHH--cCCCCeEEEEeCCH
Confidence 33443333457899999999862 2233332 13478999999754
No 21
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=88.86 E-value=12 Score=38.25 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 266 FAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 266 Fa~~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
-+=+-+...|++.+.-...-+|+|+|.|.|.-- ..|+.+. ..++|||+.+.
T Consensus 35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~----~~~v~giD~s~ 85 (263)
T PTZ00098 35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY----GAHVHGVDICE 85 (263)
T ss_pred CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc----CCEEEEEECCH
Confidence 333445677777776566678999999999732 3444433 24899999753
No 22
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=87.16 E-value=6.5 Score=41.70 Aligned_cols=99 Identities=22% Similarity=0.263 Sum_probs=53.6
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCC--ceEEEEecccccc
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNV--PFEFQDTAMTACE 362 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv--pFeF~~V~~~~~e 362 (547)
-.|+|+|.|.|. +...||.+ | .++||||.+.. .++...++ ++..++ ..+|... +.++
T Consensus 133 ~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s~~------~i~~Ar~~----~~~~~~~~~i~~~~~--dae~ 191 (322)
T PLN02396 133 LKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAVDK------NVKIARLH----ADMDPVTSTIEYLCT--TAEK 191 (322)
T ss_pred CEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCCHH------HHHHHHHH----HHhcCcccceeEEec--CHHH
Confidence 469999999997 44566643 3 48999997642 23333222 222122 3444332 2222
Q ss_pred cccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 008988 363 VERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVVTLVE 417 (547)
Q Consensus 363 v~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~PkvvtlvE 417 (547)
+ ....+..=+|-|...|||+.| .+.+|+.+ +-|+|.-.+++.
T Consensus 192 l-----~~~~~~FD~Vi~~~vLeHv~d--------~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 192 L-----ADEGRKFDAVLSLEVIEHVAN--------PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred h-----hhccCCCCEEEEhhHHHhcCC--------HHHHHHHHHHHcCCCcEEEEE
Confidence 2 111222223444568999976 24566665 567998665543
No 23
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=85.05 E-value=11 Score=38.85 Aligned_cols=95 Identities=19% Similarity=0.243 Sum_probs=54.3
Q ss_pred EEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEeccccccccc
Q 008988 286 HIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVER 365 (547)
Q Consensus 286 HIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~~ 365 (547)
+|+|+|.|.|. +...||.+ | .++||||.+.. .+ +.+.+.|+..++++++.......
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s~~------ai----~~~~~~~~~~~l~v~~~~~D~~~----- 178 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDINQQ------SL----ENLQEIAEKENLNIRTGLYDINS----- 178 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEECCHH------HH----HHHHHHHHHcCCceEEEEechhc-----
Confidence 79999999986 33445554 2 58999997542 23 34455667778876664432211
Q ss_pred ccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEE
Q 008988 366 QHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVV 413 (547)
Q Consensus 366 ~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pkvv 413 (547)
..+. ..=+.|+.+ +.|||+.++ .+..+|+.+ +.|+|.-+
T Consensus 179 ~~~~-~~fD~I~~~--~vl~~l~~~------~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 179 ASIQ-EEYDFILST--VVLMFLNRE------RIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred cccc-CCccEEEEc--chhhhCCHH------HHHHHHHHHHHhcCCCcE
Confidence 1111 111333333 457888542 245566554 77899854
No 24
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=85.04 E-value=6.3 Score=39.07 Aligned_cols=108 Identities=24% Similarity=0.237 Sum_probs=59.0
Q ss_pred HHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceE
Q 008988 273 VVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFE 352 (547)
Q Consensus 273 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 352 (547)
..++++..=...-+|||+|-+.|..= .+|+.+- |.+|+|..|.|.. ++.+.+ .=..+
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~----~~l~~~~---P~l~~~v~Dlp~v-------~~~~~~---------~~rv~ 146 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFA----IALARAY---PNLRATVFDLPEV-------IEQAKE---------ADRVE 146 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHH----HHHHHHS---TTSEEEEEE-HHH-------HCCHHH---------TTTEE
T ss_pred hhhhccccccCccEEEeccCcchHHH----HHHHHHC---CCCcceeeccHhh-------hhcccc---------ccccc
Confidence 44556655445568999999999433 3444333 7899999997642 211111 22344
Q ss_pred EEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCc---EEEEEecC
Q 008988 353 FQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPK---VVTLVEQE 419 (547)
Q Consensus 353 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pk---vvtlvEqE 419 (547)
|.+-..- +.+. . +=+|-+...||+.+|+. -..+|+.+ +.|.|. .++|+|.=
T Consensus 147 ~~~gd~f------~~~P---~-~D~~~l~~vLh~~~d~~------~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 147 FVPGDFF------DPLP---V-ADVYLLRHVLHDWSDED------CVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp EEES-TT------TCCS---S-ESEEEEESSGGGS-HHH------HHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred cccccHH------hhhc---c-ccceeeehhhhhcchHH------HHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 4332111 2222 2 44555567889998753 23456555 778876 66677653
No 25
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=84.84 E-value=3.3 Score=42.66 Aligned_cols=137 Identities=23% Similarity=0.313 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhhh----ccceeEEEEecccCcc-chHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHH
Q 008988 267 AYMSANVVIGEAVE----NEHIIHIIDFQIAQGT-QWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLS 341 (547)
Q Consensus 267 a~~tANqAILEA~~----ge~rVHIIDf~I~~G~-QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~ 341 (547)
+++++-..||+.++ +-.--+|+|||-|-|. =|.. .+.+ +-..++|.|+.+. .+..+|++|.
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~~~~~~~~vd~s~-------~~~~l~~~l~ 78 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------PSLKEYTCVDRSP-------EMLELAKRLL 78 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------cCceeeeeecCCH-------HHHHHHHHHH
Confidence 45566666777665 3345699999999984 3322 2222 1356899999754 3566777775
Q ss_pred HHHHhCCCce-EEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEEEEEecC
Q 008988 342 EFAASCNVPF-EFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVVTLVEQE 419 (547)
Q Consensus 342 ~fA~s~gvpF-eF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~PkvvtlvEqE 419 (547)
+-.. +.+- +.. ..+..+...+.+.+-|++. +.|-.|++ ..|..+++.+ +.++| ++||||..
T Consensus 79 ~~~~--~~~~~~~~------~~~~~~~~~~~~~DLvi~s--~~L~EL~~------~~r~~lv~~LW~~~~~-~LVlVEpG 141 (274)
T PF09243_consen 79 RAGP--NNRNAEWR------RVLYRDFLPFPPDDLVIAS--YVLNELPS------AARAELVRSLWNKTAP-VLVLVEPG 141 (274)
T ss_pred hccc--ccccchhh------hhhhcccccCCCCcEEEEe--hhhhcCCc------hHHHHHHHHHHHhccC-cEEEEcCC
Confidence 4321 1111 111 1111122233333333333 45555654 3477888887 55566 88899855
Q ss_pred CCCCCCChhHHHHHHH
Q 008988 420 SKTNTSPFFHRFLETL 435 (547)
Q Consensus 420 an~ns~~F~~RF~EaL 435 (547)
.- .+...+.+.++.|
T Consensus 142 t~-~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 142 TP-AGFRRIAEARDQL 156 (274)
T ss_pred Ch-HHHHHHHHHHHHH
Confidence 32 2223455555555
No 26
>PRK05785 hypothetical protein; Provisional
Probab=84.65 E-value=15 Score=36.66 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=50.2
Q ss_pred eeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEeccccccc
Q 008988 284 IIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEV 363 (547)
Q Consensus 284 rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev 363 (547)
.-.|+|+|.|.|.-. ..|+.+.+ .++||||.+.. .++.. +.- .+ + +..+
T Consensus 52 ~~~VLDlGcGtG~~~----~~l~~~~~----~~v~gvD~S~~------Ml~~a--------~~~-~~--~--~~~d---- 100 (226)
T PRK05785 52 PKKVLDVAAGKGELS----YHFKKVFK----YYVVALDYAEN------MLKMN--------LVA-DD--K--VVGS---- 100 (226)
T ss_pred CCeEEEEcCCCCHHH----HHHHHhcC----CEEEEECCCHH------HHHHH--------Hhc-cc--e--EEec----
Confidence 347999999999443 34554432 48999997542 23322 221 11 1 1111
Q ss_pred ccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 008988 364 ERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVVTLVE 417 (547)
Q Consensus 364 ~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~PkvvtlvE 417 (547)
.+.+...++..=+|-+.+.|||++| .+.+|+.+ |-|+|.++ ++|
T Consensus 101 -~~~lp~~d~sfD~v~~~~~l~~~~d--------~~~~l~e~~RvLkp~~~-ile 145 (226)
T PRK05785 101 -FEALPFRDKSFDVVMSSFALHASDN--------IEKVIAEFTRVSRKQVG-FIA 145 (226)
T ss_pred -hhhCCCCCCCEEEEEecChhhccCC--------HHHHHHHHHHHhcCceE-EEE
Confidence 2233444444444555667899865 23445444 67789543 444
No 27
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=84.39 E-value=14 Score=35.42 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=25.9
Q ss_pred HHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 008988 274 VIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDS 323 (547)
Q Consensus 274 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~ 323 (547)
.|.+.+... -+|+|+|.|.|. ++..|+.+.+ .+++||+.+
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s 45 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEID 45 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeCC
Confidence 344555433 379999999995 4566765532 356899864
No 28
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=83.08 E-value=17 Score=35.19 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=59.8
Q ss_pred HHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc
Q 008988 271 ANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP 350 (547)
Q Consensus 271 ANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp 350 (547)
+.+.+++.+.....-.|+|+|.|.|. +...||.+ | .+|||||.+.. .++... +.++..+++
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S~~------~i~~a~----~~~~~~~~~ 78 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKNPM------SIANLE----RIKAAENLD 78 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCCHH------HHHHHH----HHHHHcCCC
Confidence 45566666655455689999999997 23345554 2 38999987542 233332 234445554
Q ss_pred -eEEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEEE
Q 008988 351 -FEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVVT 414 (547)
Q Consensus 351 -FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pkvvt 414 (547)
.++... +..+.. +. ..=+.|+.+ +.+||++++ .+..+++.+ +.|+|.-++
T Consensus 79 ~v~~~~~--d~~~~~---~~-~~fD~I~~~--~~~~~~~~~------~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 79 NLHTAVV--DLNNLT---FD-GEYDFILST--VVLMFLEAK------TIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred cceEEec--ChhhCC---cC-CCcCEEEEe--cchhhCCHH------HHHHHHHHHHHHcCCCcEE
Confidence 333322 222211 11 112334433 456777532 355566555 778999653
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=81.06 E-value=13 Score=37.43 Aligned_cols=111 Identities=17% Similarity=0.111 Sum_probs=59.9
Q ss_pred HHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEE
Q 008988 274 VIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEF 353 (547)
Q Consensus 274 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 353 (547)
.|++.+. .+.-+|+|+|.|.|. +...|+.+ + .++||||.+.. .++.+.+ .++..|+.-..
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s~~------~l~~a~~----~~~~~g~~~~v 95 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLSAE------MIQRAKQ----AAEAKGVSDNM 95 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECCHH------HHHHHHH----HHHhcCCccce
Confidence 4666665 334599999999994 44566665 2 48999987542 2444433 34445653222
Q ss_pred EEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEE
Q 008988 354 QDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTL 415 (547)
Q Consensus 354 ~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pkvvtl 415 (547)
..+..+..++.. ..++..=+|-|...|||+.+ +...+-...+-|+|.-.++
T Consensus 96 ~~~~~d~~~l~~----~~~~~fD~V~~~~vl~~~~~-------~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 96 QFIHCAAQDIAQ----HLETPVDLILFHAVLEWVAD-------PKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred EEEEcCHHHHhh----hcCCCCCEEEehhHHHhhCC-------HHHHHHHHHHHcCCCeEEE
Confidence 222222222210 11122222334567888854 3444555567889995553
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=80.77 E-value=20 Score=35.81 Aligned_cols=111 Identities=27% Similarity=0.314 Sum_probs=61.2
Q ss_pred HHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc
Q 008988 271 ANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP 350 (547)
Q Consensus 271 ANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp 350 (547)
-+..|++.+.-.+.-+|+|+|.|.|. +...|+.+. |..+++|||.+.. .++.+.+++ -.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s~~------~i~~a~~~~--------~~ 77 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSSPA------MLAEARSRL--------PD 77 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECCHH------HHHHHHHhC--------CC
Confidence 35567777665556789999999983 344555553 3468999997542 233332221 12
Q ss_pred eEEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 008988 351 FEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVE 417 (547)
Q Consensus 351 FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~PkvvtlvE 417 (547)
.+|..... .+.... ..=++|+ +...|||++| +...+-++.+.|+|.-.+++.
T Consensus 78 ~~~~~~d~--~~~~~~----~~fD~v~--~~~~l~~~~d-------~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 78 CQFVEADI--ASWQPP----QALDLIF--ANASLQWLPD-------HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CeEEECch--hccCCC----CCccEEE--EccChhhCCC-------HHHHHHHHHHhcCCCcEEEEE
Confidence 33432211 111110 1112333 4457788865 234455566888999776665
No 31
>PLN02244 tocopherol O-methyltransferase
Probab=80.65 E-value=34 Score=36.22 Aligned_cols=101 Identities=24% Similarity=0.302 Sum_probs=56.5
Q ss_pred eeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc--eEEEEeccccc
Q 008988 284 IIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP--FEFQDTAMTAC 361 (547)
Q Consensus 284 rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp--FeF~~V~~~~~ 361 (547)
.-+|+|+|.|.|. +...|+.+.+ .++||||.+.. .-++..+.++..|+. .+|... +..
T Consensus 119 ~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~~----------~i~~a~~~~~~~g~~~~v~~~~~--D~~ 178 (340)
T PLN02244 119 PKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSPV----------QAARANALAAAQGLSDKVSFQVA--DAL 178 (340)
T ss_pred CCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCHH----------HHHHHHHHHHhcCCCCceEEEEc--Ccc
Confidence 3579999999985 4455666542 48999996531 122333445555653 555432 222
Q ss_pred ccccccccccCCceEEEeecccccCCCCCCccccchHHHHH-HHHHhcCCc-EEEEEe
Q 008988 362 EVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLL-RLVKSLSPK-VVTLVE 417 (547)
Q Consensus 362 ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L-~~Vk~L~Pk-vvtlvE 417 (547)
+ +...++..=+|-+...+||++| +..+| .+.+-|+|. .+++++
T Consensus 179 ~-----~~~~~~~FD~V~s~~~~~h~~d--------~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 179 N-----QPFEDGQFDLVWSMESGEHMPD--------KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred c-----CCCCCCCccEEEECCchhccCC--------HHHHHHHHHHHcCCCcEEEEEE
Confidence 2 2222333334445567899975 23444 456888997 344443
No 32
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=80.57 E-value=3.9 Score=34.92 Aligned_cols=106 Identities=24% Similarity=0.352 Sum_probs=57.5
Q ss_pred EEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEeccccccccc
Q 008988 286 HIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVER 365 (547)
Q Consensus 286 HIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~~ 365 (547)
+|+|+|.|.|.-=. .|+++. |..|+||||.+. ..++...+++.+ ...+-..+|+.-.. ..+.
T Consensus 4 ~vLDlGcG~G~~~~----~l~~~~---~~~~v~gvD~s~------~~~~~a~~~~~~--~~~~~~i~~~~~d~-~~~~-- 65 (112)
T PF12847_consen 4 RVLDLGCGTGRLSI----ALARLF---PGARVVGVDISP------EMLEIARERAAE--EGLSDRITFVQGDA-EFDP-- 65 (112)
T ss_dssp EEEEETTTTSHHHH----HHHHHH---TTSEEEEEESSH------HHHHHHHHHHHH--TTTTTTEEEEESCC-HGGT--
T ss_pred EEEEEcCcCCHHHH----HHHhcC---CCCEEEEEeCCH------HHHHHHHHHHHh--cCCCCCeEEEECcc-ccCc--
Confidence 68999999986433 333321 457899999754 246666665533 22334555554322 0110
Q ss_pred ccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 008988 366 QHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVVTLVE 417 (547)
Q Consensus 366 ~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~PkvvtlvE 417 (547)
+ ...+=++|+.+. +.+|++.+. ..+..+|+.+ +.|+|.-+++++
T Consensus 66 ~--~~~~~D~v~~~~-~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 66 D--FLEPFDLVICSG-FTLHFLLPL-----DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp T--TSSCEEEEEECS-GSGGGCCHH-----HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c--cCCCCCEEEECC-Cccccccch-----hHHHHHHHHHHHhcCCCcEEEEE
Confidence 0 001123455555 566766532 2355666655 688999776654
No 33
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=80.51 E-value=15 Score=38.22 Aligned_cols=118 Identities=16% Similarity=0.092 Sum_probs=69.3
Q ss_pred HHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEE
Q 008988 274 VIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEF 353 (547)
Q Consensus 274 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 353 (547)
.|.+++.. ...|||+|.|.|.-=..|+++|.. ..++||||-+. ..|+.+.++|.+ +--++++++
T Consensus 56 ~ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~------~mL~~a~~~l~~--~~p~~~v~~ 119 (301)
T TIGR03438 56 EIAAATGA--GCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISA------DALKESAAALAA--DYPQLEVHG 119 (301)
T ss_pred HHHHhhCC--CCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCH------HHHHHHHHHHHh--hCCCceEEE
Confidence 35555542 347999999999776677777742 47899999765 246777777653 112344443
Q ss_pred EEeccccccccccccc-ccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEEEEE
Q 008988 354 QDTAMTACEVERQHLR-VQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVVTLV 416 (547)
Q Consensus 354 ~~V~~~~~ev~~~~L~-i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pkvvtlv 416 (547)
+..+-.+. ...+. ...+..+++.+...++++..+ ....+|+.| +.|+|.=..++
T Consensus 120 --i~gD~~~~-~~~~~~~~~~~~~~~~~gs~~~~~~~~------e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 120 --ICADFTQP-LALPPEPAAGRRLGFFPGSTIGNFTPE------EAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred --EEEcccch-hhhhcccccCCeEEEEecccccCCCHH------HHHHHHHHHHHhcCCCCEEEE
Confidence 33322210 00001 111246777766778888532 234677777 67899755554
No 34
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=79.74 E-value=19 Score=35.16 Aligned_cols=50 Identities=18% Similarity=0.080 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhh--ccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 266 FAYMSANVVIGEAVE--NEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 266 Fa~~tANqAILEA~~--ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
.++-.....+++.+. ..+.-+|+|+|.|.|. +...|+.+ ..+|||||.+.
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~-----~~~v~gvD~s~ 87 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR-----GAIVKAVDISE 87 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC-----CCEEEEEECCH
Confidence 344555667777766 2345789999999985 55566654 13899999754
No 35
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=79.63 E-value=46 Score=32.59 Aligned_cols=103 Identities=20% Similarity=0.327 Sum_probs=51.9
Q ss_pred cceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEeccccc
Q 008988 282 EHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTAC 361 (547)
Q Consensus 282 e~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ 361 (547)
.+..+|+|+|.|.|.- ...|+.+ + .++|+|+.+.. .++.+.+++ ...++..+|..... .
T Consensus 47 ~~~~~vLdiG~G~G~~----~~~l~~~-~----~~v~~iD~s~~------~~~~a~~~~----~~~~~~~~~~~~~~--~ 105 (233)
T PRK05134 47 LFGKRVLDVGCGGGIL----SESMARL-G----ADVTGIDASEE------NIEVARLHA----LESGLKIDYRQTTA--E 105 (233)
T ss_pred CCCCeEEEeCCCCCHH----HHHHHHc-C----CeEEEEcCCHH------HHHHHHHHH----HHcCCceEEEecCH--H
Confidence 3456899999998863 2344443 2 46999987532 233333332 33455556544322 1
Q ss_pred ccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEE
Q 008988 362 EVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLV 416 (547)
Q Consensus 362 ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pkvvtlv 416 (547)
++.. ...+-.=+|-+...++|+++ +.+.+-...+.|+|.-.+++
T Consensus 106 ~~~~----~~~~~fD~Ii~~~~l~~~~~-------~~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 106 ELAA----EHPGQFDVVTCMEMLEHVPD-------PASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred Hhhh----hcCCCccEEEEhhHhhccCC-------HHHHHHHHHHHcCCCcEEEE
Confidence 1110 01121222333456777754 23334444577889854444
No 36
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=79.51 E-value=14 Score=40.44 Aligned_cols=113 Identities=14% Similarity=0.119 Sum_probs=57.8
Q ss_pred HHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceE
Q 008988 273 VVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFE 352 (547)
Q Consensus 273 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 352 (547)
..|++.+.....-+|+|+|.|.|.--. .|+.+. -++||||.+.. .++.. +.+ .. ..-..+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~----~la~~~-----~~v~giD~s~~------~l~~a-~~~---~~-~~~~i~ 86 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTG----ELAKKA-----GQVIALDFIES------VIKKN-ESI---NG-HYKNVK 86 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHH----HHHhhC-----CEEEEEeCCHH------HHHHH-HHH---hc-cCCceE
Confidence 455666654444489999999995443 455442 17899996542 23221 111 11 111233
Q ss_pred EEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEEEEE
Q 008988 353 FQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVVTLV 416 (547)
Q Consensus 353 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pkvvtlv 416 (547)
|....... ..+...++..=+|-|.+.|||++++ .+..+|..+ +-|+|.-+++.
T Consensus 87 ~~~~d~~~-----~~~~~~~~~fD~I~~~~~l~~l~~~------~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 87 FMCADVTS-----PDLNISDGSVDLIFSNWLLMYLSDK------EVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEEecccc-----cccCCCCCCEEEEehhhhHHhCCHH------HHHHHHHHHHHhcCCCeEEEE
Confidence 43222111 1122222333344455678999763 234566555 55899966544
No 37
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=79.07 E-value=29 Score=34.07 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=53.7
Q ss_pred EEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEeccccccccc
Q 008988 286 HIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVER 365 (547)
Q Consensus 286 HIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~~ 365 (547)
.|+|+|.|.|..-..|.+.+ |..++||||.+.. .++.+.+++ -++. |... +..+
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~-------~~~~v~giDiS~~------~l~~A~~~~------~~~~--~~~~--d~~~--- 99 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLL-------PFKHIYGVEINEY------AVEKAKAYL------PNIN--IIQG--SLFD--- 99 (204)
T ss_pred cEEEEecCCCHHHHHHHHhC-------CCCeEEEEECCHH------HHHHHHhhC------CCCc--EEEe--eccC---
Confidence 49999999996554443322 2468999997642 234333221 1222 2211 1111
Q ss_pred ccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEEecC
Q 008988 366 QHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQE 419 (547)
Q Consensus 366 ~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~PkvvtlvEqE 419 (547)
...++..=+|-+...|||++. ..+..+++.+....=+.+++.|-.
T Consensus 100 ---~~~~~sfD~V~~~~vL~hl~p------~~~~~~l~el~r~~~~~v~i~e~~ 144 (204)
T TIGR03587 100 ---PFKDNFFDLVLTKGVLIHINP------DNLPTAYRELYRCSNRYILIAEYY 144 (204)
T ss_pred ---CCCCCCEEEEEECChhhhCCH------HHHHHHHHHHHhhcCcEEEEEEee
Confidence 112222223335567888853 235667777777766788888854
No 38
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=78.53 E-value=24 Score=34.86 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=66.9
Q ss_pred HHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceE
Q 008988 273 VVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFE 352 (547)
Q Consensus 273 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 352 (547)
..+++|++--+.--++|+|.|.|-= ---||++ -..+|+||-+.. .-++|.+.|+.-+++++
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN----alyLA~~-----G~~VtAvD~s~~----------al~~l~~~a~~~~l~i~ 80 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN----ALYLASQ-----GFDVTAVDISPV----------ALEKLQRLAEEEGLDIR 80 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH----HHHHHHT-----T-EEEEEESSHH----------HHHHHHHHHHHTT-TEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH----HHHHHHC-----CCeEEEEECCHH----------HHHHHHHHHhhcCceeE
Confidence 4577777665666899999999942 1135555 378999997642 23457889999999977
Q ss_pred EEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHH-hcCCcEEEEE
Q 008988 353 FQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVK-SLSPKVVTLV 416 (547)
Q Consensus 353 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk-~L~Pkvvtlv 416 (547)
........ ..+ +++.=+|.+...++++..+ .++.+++.++ .++|--+.+.
T Consensus 81 ~~~~Dl~~-------~~~-~~~yD~I~st~v~~fL~~~------~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 81 TRVADLND-------FDF-PEEYDFIVSTVVFMFLQRE------LRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EEE-BGCC-------BS--TTTEEEEEEESSGGGS-GG------GHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEecchh-------ccc-cCCcCEEEEEEEeccCCHH------HHHHHHHHHHhhcCCcEEEEE
Confidence 76543322 222 2333355666778888643 3667777764 5799744433
No 39
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=76.55 E-value=10 Score=34.77 Aligned_cols=43 Identities=30% Similarity=0.435 Sum_probs=28.6
Q ss_pred hhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 279 VENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 279 ~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
-...+..+|||||-|.|.==..|-..|... .|.++|+|||...
T Consensus 21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNE 63 (141)
T ss_pred hccCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCc
Confidence 345678999999999984222222223222 2789999999764
No 40
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=75.38 E-value=21 Score=37.78 Aligned_cols=103 Identities=21% Similarity=0.221 Sum_probs=58.0
Q ss_pred ceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHH-hC-CCceEEEEecccc
Q 008988 283 HIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAA-SC-NVPFEFQDTAMTA 360 (547)
Q Consensus 283 ~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~-s~-gvpFeF~~V~~~~ 360 (547)
+...|+|+|.|.|. +...|+.+ | .+|||||.+.. .++...++..+.-. .. +...+|.....
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S~~------ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl-- 206 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDISAA------MVAEAERRAKEALAALPPEVLPKFEANDL-- 206 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECCHH------HHHHHHHHHHhcccccccccceEEEEcch--
Confidence 34689999999986 34455544 2 48999997642 45555554432100 01 23345544221
Q ss_pred cccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEE
Q 008988 361 CEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLV 416 (547)
Q Consensus 361 ~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pkvvtlv 416 (547)
+++ . ..=+ +|| |...|||++++ ....+++.++.+.|+.+++.
T Consensus 207 ~~l-----~-~~fD-~Vv-~~~vL~H~p~~------~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 207 ESL-----S-GKYD-TVT-CLDVLIHYPQD------KADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hhc-----C-CCcC-EEE-EcCEEEecCHH------HHHHHHHHHHhhcCCEEEEE
Confidence 111 1 0112 333 45667888763 24568888888888877664
No 41
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=74.94 E-value=16 Score=29.48 Aligned_cols=94 Identities=22% Similarity=0.224 Sum_probs=51.2
Q ss_pred EEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEeccccccccccc
Q 008988 288 IDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQH 367 (547)
Q Consensus 288 IDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~~~~ 367 (547)
+|+|.|.|.....|.+. +..++||||.+.. .++ ...+..+..+++ |.. .+...
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~------~~~----~~~~~~~~~~~~--~~~-------~d~~~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEE------MLE----QARKRLKNEGVS--FRQ-------GDAED 53 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HH------HHH----HHHHHTTTSTEE--EEE-------SBTTS
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHH------HHH----HHHhcccccCch--hee-------ehHHh
Confidence 57888887766555543 4579999997531 122 333333344444 211 12345
Q ss_pred ccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEE
Q 008988 368 LRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTL 415 (547)
Q Consensus 368 L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pkvvtl 415 (547)
+...++-.=+|-+...+||+. ++...+-...|-|+|.=+.+
T Consensus 54 l~~~~~sfD~v~~~~~~~~~~-------~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 54 LPFPDNSFDVVFSNSVLHHLE-------DPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SSS-TT-EEEEEEESHGGGSS-------HHHHHHHHHHHHEEEEEEEE
T ss_pred Cccccccccccccccceeecc-------CHHHHHHHHHHHcCcCeEEe
Confidence 555566665777777889982 23344444557788875443
No 42
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=74.81 E-value=8.7 Score=39.42 Aligned_cols=100 Identities=25% Similarity=0.436 Sum_probs=64.7
Q ss_pred ceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEecccccc
Q 008988 283 HIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACE 362 (547)
Q Consensus 283 ~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~e 362 (547)
...-|.|+|.|.| .|-+.||+. | ..+||||.+... ++.. ...|.+-|+..+|..... ++
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~se~~------I~~A----k~ha~e~gv~i~y~~~~~--ed 117 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDASEKP------IEVA----KLHALESGVNIDYRQATV--ED 117 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCChHH------HHHH----HHhhhhccccccchhhhH--HH
Confidence 4567899999999 777888765 3 899999976432 3332 235666678877766543 22
Q ss_pred cccccccccCCceEEEeecccccCCCCCCccccchHHHHHH-HHHhcCCcEEEEE
Q 008988 363 VERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLR-LVKSLSPKVVTLV 416 (547)
Q Consensus 363 v~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~-~Vk~L~Pkvvtlv 416 (547)
+... -|-.=||-|+=.|+|++|. .. |++ ..+-++|.-++++
T Consensus 118 l~~~-----~~~FDvV~cmEVlEHv~dp-------~~-~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 118 LASA-----GGQFDVVTCMEVLEHVPDP-------ES-FLRACAKLVKPGGILFL 159 (243)
T ss_pred HHhc-----CCCccEEEEhhHHHccCCH-------HH-HHHHHHHHcCCCcEEEE
Confidence 2111 1334467788899999873 33 555 4577799866543
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=73.78 E-value=45 Score=35.18 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=51.0
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHH-HHHHHHHhCCCceEEEEeccccccc
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGK-RLSEFAASCNVPFEFQDTAMTACEV 363 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~-rL~~fA~s~gvpFeF~~V~~~~~ev 363 (547)
-+|+|+|.|.|.. +..++.+ |+- +++|||.+. +..... ...+++. .+.+.+|.... .+++
T Consensus 124 ~~VLDIGCG~G~~----~~~la~~--g~~--~V~GiD~S~--------~~l~q~~a~~~~~~-~~~~i~~~~~d--~e~l 184 (322)
T PRK15068 124 RTVLDVGCGNGYH----MWRMLGA--GAK--LVVGIDPSQ--------LFLCQFEAVRKLLG-NDQRAHLLPLG--IEQL 184 (322)
T ss_pred CEEEEeccCCcHH----HHHHHHc--CCC--EEEEEcCCH--------HHHHHHHHHHHhcC-CCCCeEEEeCC--HHHC
Confidence 3799999999853 2244444 332 599999653 111111 1112221 12234554332 2222
Q ss_pred ccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 008988 364 ERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVE 417 (547)
Q Consensus 364 ~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~PkvvtlvE 417 (547)
.. ++-.=+|-|...|||+.| +.+.+-...+.|+|.-.++.|
T Consensus 185 -----p~-~~~FD~V~s~~vl~H~~d-------p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 185 -----PA-LKAFDTVFSMGVLYHRRS-------PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred -----CC-cCCcCEEEECChhhccCC-------HHHHHHHHHHhcCCCcEEEEE
Confidence 11 121112334456888754 455666666888998655554
No 44
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=73.52 E-value=1.3 Score=37.40 Aligned_cols=32 Identities=38% Similarity=0.457 Sum_probs=22.2
Q ss_pred EEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCC
Q 008988 288 IDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQST 326 (547)
Q Consensus 288 IDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~ 326 (547)
+|+|.|.|.==..|++.+ |..++||+|.+.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~ 32 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSM 32 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSST
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHH
Confidence 478888876666666665 79999999987654
No 45
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=70.54 E-value=48 Score=31.09 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=21.0
Q ss_pred EEeecccccCCCCCCccccchHHHHHHH-HHhcCCc-EEEEEec
Q 008988 377 VVNFPFVLHHMPDESVSTENHRDRLLRL-VKSLSPK-VVTLVEQ 418 (547)
Q Consensus 377 aVN~~~~LHhl~desvs~~n~rd~~L~~-Vk~L~Pk-vvtlvEq 418 (547)
+|-+.+.||+++| +..+|+. .|-|+|. .+++.|-
T Consensus 47 ~v~~~~~l~~~~d--------~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 47 AVTMGYGLRNVVD--------RLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred EEEecchhhcCCC--------HHHHHHHHHHHcCcCeEEEEEEC
Confidence 3345678899864 3455554 4789998 4445553
No 46
>PRK06922 hypothetical protein; Provisional
Probab=69.30 E-value=30 Score=40.44 Aligned_cols=112 Identities=18% Similarity=0.248 Sum_probs=58.7
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEecccccccc
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVE 364 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~ 364 (547)
-.|+|+|.|.|. +...||.+. |..++||||.+.. .++.+.+++ ...|.++++.. .+..++.
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~~------MLe~Ararl----~~~g~~ie~I~--gDa~dLp 480 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISEN------VIDTLKKKK----QNEGRSWNVIK--GDAINLS 480 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCHH------HHHHHHHHh----hhcCCCeEEEE--cchHhCc
Confidence 479999999984 345566552 5689999998652 244444332 23355555422 2211110
Q ss_pred cccccccCCceEEEeecccccCCCC----CC--ccccchHHHHHHHHHhcCCc-EEEEEec
Q 008988 365 RQHLRVQPGEAVVVNFPFVLHHMPD----ES--VSTENHRDRLLRLVKSLSPK-VVTLVEQ 418 (547)
Q Consensus 365 ~~~L~i~~gEaLaVN~~~~LHhl~d----es--vs~~n~rd~~L~~Vk~L~Pk-vvtlvEq 418 (547)
. ...++.+=+|-+.+.+|++.+ .. ....+....+-+..+.|+|. .++++|.
T Consensus 481 -~--~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 481 -S--SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -c--ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 0 123444444445566787642 11 11122333344455899998 4455553
No 47
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=67.69 E-value=15 Score=37.48 Aligned_cols=110 Identities=29% Similarity=0.376 Sum_probs=67.4
Q ss_pred hhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEecc
Q 008988 279 VENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAM 358 (547)
Q Consensus 279 ~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~ 358 (547)
+.-+.---|+|+|.|-|.+=- -|+.|- |-=.|||||.+. ..|++.. .......|..-..
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTe----lL~~Rw---P~A~i~GiDsS~------~Mla~Aa--------~rlp~~~f~~aDl 84 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTE----LLARRW---PDAVITGIDSSP------AMLAKAA--------QRLPDATFEEADL 84 (257)
T ss_pred CCccccceeeecCCCCCHHHH----HHHHhC---CCCeEeeccCCH------HHHHHHH--------HhCCCCceecccH
Confidence 344455679999999998743 455554 566899999864 2344433 3344445533221
Q ss_pred cccccccccccc-cCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEEecCCCCCCC
Q 008988 359 TACEVERQHLRV-QPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTS 425 (547)
Q Consensus 359 ~~~ev~~~~L~i-~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~PkvvtlvEqEan~ns~ 425 (547)
...+- .+-..|.-|. .||-+|| |-+.|-|.+-.|.|.-|.-|..-.|+..+
T Consensus 85 -------~~w~p~~~~dllfaNA--vlqWlpd-------H~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 85 -------RTWKPEQPTDLLFANA--VLQWLPD-------HPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred -------hhcCCCCccchhhhhh--hhhhccc-------cHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 11111 1223344454 5577776 45788899999999999888776665543
No 48
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=66.27 E-value=1.2e+02 Score=30.21 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=30.0
Q ss_pred HHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 271 ANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 271 ANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
.-..+++.+...+.-.|+|+|.|.|. +.+.|+.+ + -++||||.+.
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s~ 74 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLSP 74 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECCH
Confidence 34455666654444579999999994 45566654 2 4899999753
No 49
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=65.88 E-value=8 Score=38.21 Aligned_cols=51 Identities=18% Similarity=0.414 Sum_probs=34.4
Q ss_pred hhhccceeEEEEecccCc---cchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHH
Q 008988 278 AVENEHIIHIIDFQIAQG---TQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFA 344 (547)
Q Consensus 278 A~~ge~rVHIIDf~I~~G---~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA 344 (547)
+++=.+.=|++|+|.+.| .+|. ++ .|..|+++|+... +.++.+.+++.+|.
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~~~------~a~~~~~~N~~~fg 82 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIERDE------EALELIERNAARFG 82 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEecCH------HHHHHHHHHHHHhC
Confidence 344334449999999988 4665 21 3789999998654 24677777666554
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=62.55 E-value=66 Score=34.88 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=28.7
Q ss_pred HHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 272 NVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 272 NqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
-..|++.+.-...-+|+|+|.|.|. +...||.+.| .++|||+.+.
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~ 200 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISA 200 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCH
Confidence 3445555543344589999987775 4445565543 4899998764
No 51
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=60.63 E-value=96 Score=32.92 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 274 VIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 274 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
+|++.+...+.=.|+|+|.|.|. ++..++.+ |+ -+++|||.+.
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDpS~ 154 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDPTV 154 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcCCH
Confidence 34554433333489999999996 33444443 33 2789999754
No 52
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=60.20 E-value=1.3e+02 Score=29.70 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=58.0
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-eEEEEeccccccc
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP-FEFQDTAMTACEV 363 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~ev 363 (547)
-.|+|++.|.|. --|.+|+.. . -++|+|+.... .++.+.+ =++..|+. .+|. ..+..+.
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~---a--~~V~~vE~~~~------a~~~a~~----Nl~~~~~~~v~~~--~~D~~~~ 114 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRY---A--AGATLLEMDRA------VAQQLIK----NLATLKAGNARVV--NTNALSF 114 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcC---C--CEEEEEECCHH------HHHHHHH----HHHHhCCCcEEEE--EchHHHH
Confidence 368999998883 223455532 1 38999986432 1333333 34444543 3332 2222221
Q ss_pred ccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHh---cCCcEEEEEecCCCCC
Q 008988 364 ERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKS---LSPKVVTLVEQESKTN 423 (547)
Q Consensus 364 ~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~---L~PkvvtlvEqEan~n 423 (547)
+... -.+=+.|++|=+|. .+....++..|+. |.|+-+++||....++
T Consensus 115 -l~~~-~~~fDlV~~DPPy~-----------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 115 -LAQP-GTPHNVVFVDPPFR-----------KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred -Hhhc-CCCceEEEECCCCC-----------CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 0011 11236788886653 1223567788877 6999999999766543
No 53
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=59.05 E-value=66 Score=31.32 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=25.1
Q ss_pred ceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 283 HIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 283 ~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
+.-.|+|+|.|.|.-...|.+ +. |..++||||.+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~----~~---p~~~v~gVD~s~ 74 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK----AN---PDINFIGIEVHE 74 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH----HC---CCccEEEEEech
Confidence 345799999999976555543 31 456899999765
No 54
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=58.12 E-value=85 Score=30.36 Aligned_cols=98 Identities=23% Similarity=0.277 Sum_probs=50.3
Q ss_pred ceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCC--ceEEEEecccc
Q 008988 283 HIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNV--PFEFQDTAMTA 360 (547)
Q Consensus 283 ~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv--pFeF~~V~~~~ 360 (547)
+.-.|+|+|.|.|.- ...|+.+ + .++||||.+.. .++.+.+++ ...++ .+.|.....
T Consensus 63 ~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s~~------~i~~a~~~~----~~~~~~~~i~~~~~d~-- 121 (230)
T PRK07580 63 TGLRILDAGCGVGSL----SIPLARR--G---AKVVASDISPQ------MVEEARERA----PEAGLAGNITFEVGDL-- 121 (230)
T ss_pred CCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECCHH------HHHHHHHHH----HhcCCccCcEEEEcCc--
Confidence 456899999999853 3345543 2 24999997542 244444433 33344 344543321
Q ss_pred cccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhc-CCcEEEE
Q 008988 361 CEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSL-SPKVVTL 415 (547)
Q Consensus 361 ~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L-~Pkvvtl 415 (547)
.. .. ..=+.|+ +...|||.+++ ....+++.+.++ ++.+++.
T Consensus 122 ~~-----~~-~~fD~v~--~~~~l~~~~~~------~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 122 ES-----LL-GRFDTVV--CLDVLIHYPQE------DAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hh-----cc-CCcCEEE--EcchhhcCCHH------HHHHHHHHHHhhcCCeEEEE
Confidence 11 00 1112232 33456887653 245667766555 4445444
No 55
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=58.07 E-value=1.8e+02 Score=28.00 Aligned_cols=100 Identities=22% Similarity=0.376 Sum_probs=49.5
Q ss_pred eeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCC-ceEEEEecccccc
Q 008988 284 IIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNV-PFEFQDTAMTACE 362 (547)
Q Consensus 284 rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv-pFeF~~V~~~~~e 362 (547)
...|+|+|.+.|. +...|+.. + .++|||+.+.. .++...+++ ...++ ++.|.... ..+
T Consensus 46 ~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s~~------~~~~a~~~~----~~~~~~~~~~~~~d--~~~ 104 (224)
T TIGR01983 46 GLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDASEE------NIEVAKLHA----KKDPLLKIEYRCTS--VED 104 (224)
T ss_pred CCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCCHH------HHHHHHHHH----HHcCCCceEEEeCC--HHH
Confidence 5689999999884 33344443 2 24999986532 233333333 23444 35553322 111
Q ss_pred cccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEEEEE
Q 008988 363 VERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVVTLV 416 (547)
Q Consensus 363 v~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pkvvtlv 416 (547)
..... ..+-+.|+. ...+||..+ +. .+|+.+ +.|+|.-++++
T Consensus 105 ~~~~~--~~~~D~i~~--~~~l~~~~~-------~~-~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 105 LAEKG--AKSFDVVTC--MEVLEHVPD-------PQ-AFIRACAQLLKPGGILFF 147 (224)
T ss_pred hhcCC--CCCccEEEe--hhHHHhCCC-------HH-HHHHHHHHhcCCCcEEEE
Confidence 11111 112334443 345677753 33 454444 67788855544
No 56
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=57.74 E-value=94 Score=33.25 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=61.2
Q ss_pred HHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceE
Q 008988 273 VVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFE 352 (547)
Q Consensus 273 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFe 352 (547)
..+++.+.....=+|+|+|.|.|. +-..|+.+. |..++|+||.+.. .++.+.+++. ..++..+
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~~------Al~~A~~nl~----~n~l~~~ 248 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSAA------ALESSRATLA----ANGLEGE 248 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCHH------HHHHHHHHHH----HcCCCCE
Confidence 444555543222369999999997 344555542 4678999997642 3555554443 3466666
Q ss_pred EEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHH-HHHhcCCcEEE
Q 008988 353 FQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLR-LVKSLSPKVVT 414 (547)
Q Consensus 353 F~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~-~Vk~L~Pkvvt 414 (547)
|..... . +.+ -.+=+.|+.|-+| |.-.+... .. ...+++ ..+.|+|.-..
T Consensus 249 ~~~~D~--~----~~~-~~~fDlIvsNPPF--H~g~~~~~--~~-~~~~i~~a~~~LkpgG~L 299 (342)
T PRK09489 249 VFASNV--F----SDI-KGRFDMIISNPPF--HDGIQTSL--DA-AQTLIRGAVRHLNSGGEL 299 (342)
T ss_pred EEEccc--c----ccc-CCCccEEEECCCc--cCCccccH--HH-HHHHHHHHHHhcCcCCEE
Confidence 543211 1 111 1233678888765 44332211 12 334444 45779998443
No 57
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=57.31 E-value=64 Score=31.27 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=51.1
Q ss_pred EEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEeccccccccc
Q 008988 286 HIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVER 365 (547)
Q Consensus 286 HIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~~ 365 (547)
+|+|+|.|.|. +...++.+. |..++|||+.+.. .++...++ .+..|+.-....+..+..+..
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~~------~~~~a~~~----~~~~gl~~~i~~~~~d~~~~~- 63 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISPE------QAEVGRER----IRALGLQGRIRIFYRDSAKDP- 63 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCHH------HHHHHHHH----HHhcCCCcceEEEecccccCC-
Confidence 68999988885 334555543 3468999987431 23333333 334455433222222221110
Q ss_pred ccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEEE-EEe
Q 008988 366 QHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVVT-LVE 417 (547)
Q Consensus 366 ~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pkvvt-lvE 417 (547)
+. ..=+ + |-+...+||+.+ .+.+|+.+ +.|+|.-.+ +.+
T Consensus 64 --~~-~~fD-~-I~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 64 --FP-DTYD-L-VFGFEVIHHIKD--------KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred --CC-CCCC-E-eehHHHHHhCCC--------HHHHHHHHHHHcCCCCEEEEEE
Confidence 00 0112 2 224456788754 34566666 668999443 443
No 58
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=56.50 E-value=1.6e+02 Score=29.29 Aligned_cols=115 Identities=14% Similarity=0.203 Sum_probs=57.4
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEec----ccc
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTA----MTA 360 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~----~~~ 360 (547)
-.|+|.|.|.|. -+..||.+ -..+||||.+..+ ++ ++++..|++.+..... ...
T Consensus 39 ~rvL~~gCG~G~----da~~LA~~-----G~~V~avD~s~~A------i~-------~~~~~~~l~~~~~~~~~~~~~~~ 96 (218)
T PRK13255 39 SRVLVPLCGKSL----DMLWLAEQ-----GHEVLGVELSELA------VE-------QFFAENGLTPQTRQSGEFEHYQA 96 (218)
T ss_pred CeEEEeCCCChH----hHHHHHhC-----CCeEEEEccCHHH------HH-------HHHHHcCCCcccccccccccccc
Confidence 478999998883 23455654 3689999976532 22 2345556654311000 000
Q ss_pred cccc---cccccccC---CceEEEeecccccCCCCCCccccchHHHHHHHHHh-cCCc--EEEEEe--cCCCCCCCCh
Q 008988 361 CEVE---RQHLRVQP---GEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKS-LSPK--VVTLVE--QESKTNTSPF 427 (547)
Q Consensus 361 ~ev~---~~~L~i~~---gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~-L~Pk--vvtlvE--qEan~ns~~F 427 (547)
..++ .+.+...+ +..=.|.-.-.+||++. +.|..++..|.+ |+|. +++++. .+....++||
T Consensus 97 ~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~------~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~ 168 (218)
T PRK13255 97 GEITIYCGDFFALTAADLADVDAVYDRAALIALPE------EMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPF 168 (218)
T ss_pred CceEEEECcccCCCcccCCCeeEEEehHhHhhCCH------HHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCC
Confidence 0110 11111111 22222222335678863 457888888755 8999 454333 2333455654
No 59
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=55.26 E-value=1.6e+02 Score=28.44 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=50.1
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-eEEEEeccccccc
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP-FEFQDTAMTACEV 363 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~ev 363 (547)
-+|+|+|.|.|.- ++.=+.. . |..++||||.+.. .++.+ .+.++..|++ ++|.. .+..++
T Consensus 44 ~~vLDiGcGtG~~--s~~la~~-~----~~~~V~~iD~s~~------~~~~a----~~~~~~~~~~~i~~i~--~d~~~~ 104 (181)
T TIGR00138 44 KKVIDIGSGAGFP--GIPLAIA-R----PELKLTLLESNHK------KVAFL----REVKAELGLNNVEIVN--GRAEDF 104 (181)
T ss_pred CeEEEecCCCCcc--HHHHHHH-C----CCCeEEEEeCcHH------HHHHH----HHHHHHhCCCCeEEEe--cchhhc
Confidence 4899999999932 2211221 1 3468999997642 23333 3445556764 44433 333332
Q ss_pred ccccccccCCceEEEeecccccCCCCCCccccchHHHHHHH-HHhcCCcEEEEEe
Q 008988 364 ERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRL-VKSLSPKVVTLVE 417 (547)
Q Consensus 364 ~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~-Vk~L~PkvvtlvE 417 (547)
.. ..+=++|+.|+ +|++ +.++.. .+-|+|.-+++++
T Consensus 105 ~~----~~~fD~I~s~~---~~~~-----------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 105 QH----EEQFDVITSRA---LASL-----------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred cc----cCCccEEEehh---hhCH-----------HHHHHHHHHhcCCCCEEEEE
Confidence 11 11223555554 4433 234554 3558999777665
No 60
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=53.03 E-value=2.3e+02 Score=27.65 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=52.0
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-eEEEEeccccccc
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP-FEFQDTAMTACEV 363 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~ev 363 (547)
-.|+|+|.|.|.. ++ .+|.+. |..++||||.+.. .++.+ .+.++..|++ ++|.. .+..++
T Consensus 47 ~~VLDiGcGtG~~--al--~la~~~---~~~~V~giD~s~~------~l~~A----~~~~~~~~l~~i~~~~--~d~~~~ 107 (187)
T PRK00107 47 ERVLDVGSGAGFP--GI--PLAIAR---PELKVTLVDSLGK------KIAFL----REVAAELGLKNVTVVH--GRAEEF 107 (187)
T ss_pred CeEEEEcCCCCHH--HH--HHHHHC---CCCeEEEEeCcHH------HHHHH----HHHHHHcCCCCEEEEe--ccHhhC
Confidence 4689999988842 22 222221 3569999997542 23333 3455566775 55543 333332
Q ss_pred ccccccccCCceEEEeecccccCCCCCCccccchHHHHHHH-HHhcCCcEEEEEe
Q 008988 364 ERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRL-VKSLSPKVVTLVE 417 (547)
Q Consensus 364 ~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~-Vk~L~PkvvtlvE 417 (547)
.. -.+-++|+.|. + .+ .+.+++. .+.|+|.=.+++.
T Consensus 108 ~~----~~~fDlV~~~~------~-------~~-~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 108 GQ----EEKFDVVTSRA------V-------AS-LSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CC----CCCccEEEEcc------c-------cC-HHHHHHHHHHhcCCCeEEEEE
Confidence 21 12345566553 1 11 3456665 5899999666554
No 61
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=52.55 E-value=1.2e+02 Score=28.50 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=28.1
Q ss_pred HHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 274 VIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 274 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
.|++.+.-...=+|+|+|.|.|. |...|+.+ + -++|+|+-+.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~ 45 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDP 45 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCH
Confidence 45666543333489999999986 44555656 2 3899999754
No 62
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=51.30 E-value=2.3e+02 Score=28.55 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=51.1
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-eEEEEeccccccc
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP-FEFQDTAMTACEV 363 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~ev 363 (547)
=+|+|+|.|.|.-.. + ++... | |.-+|||||.+.. .++.+.++ ++..|++ .+|.. .+.++
T Consensus 79 ~~VLDiG~G~G~~~~-~---~a~~~-g-~~~~v~gvD~s~~------~l~~A~~~----~~~~g~~~v~~~~--~d~~~- 139 (272)
T PRK11873 79 ETVLDLGSGGGFDCF-L---AARRV-G-PTGKVIGVDMTPE------MLAKARAN----ARKAGYTNVEFRL--GEIEA- 139 (272)
T ss_pred CEEEEeCCCCCHHHH-H---HHHHh-C-CCCEEEEECCCHH------HHHHHHHH----HHHcCCCCEEEEE--cchhh-
Confidence 389999998874222 1 22221 1 3558999997532 24444332 3345553 33322 22222
Q ss_pred ccccccccCC--ceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEE-EEEe
Q 008988 364 ERQHLRVQPG--EAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVV-TLVE 417 (547)
Q Consensus 364 ~~~~L~i~~g--EaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pkvv-tlvE 417 (547)
+.+..+ +.|+.|+ .+||.++ ....|=...+-|+|.=. ++++
T Consensus 140 ----l~~~~~~fD~Vi~~~--v~~~~~d-------~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 140 ----LPVADNSVDVIISNC--VINLSPD-------KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ----CCCCCCceeEEEEcC--cccCCCC-------HHHHHHHHHHHcCCCcEEEEEE
Confidence 222223 3444454 4577764 23345556688899843 4443
No 63
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=50.73 E-value=1.9e+02 Score=30.90 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=85.8
Q ss_pred HHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-eE
Q 008988 274 VIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP-FE 352 (547)
Q Consensus 274 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-Fe 352 (547)
.|..++. ....|||||.|.|..=..||++|... +. .++-.+||-+.+ .|+...++|. .-..| .+
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDIS~~------~L~~a~~~L~----~~~~p~l~ 133 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDVSRS------ELQRTLAELP----LGNFSHVR 133 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEECCHH------HHHHHHHhhh----hccCCCeE
Confidence 4555553 23479999999999999999999732 22 367789987653 4777777775 12345 77
Q ss_pred EEEecccccc-cc-cccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHh--cCCcEEEEEecCCC-------
Q 008988 353 FQDTAMTACE-VE-RQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKS--LSPKVVTLVEQESK------- 421 (547)
Q Consensus 353 F~~V~~~~~e-v~-~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~--L~PkvvtlvEqEan------- 421 (547)
+++|..+-.+ +. +..-....+-.++.-.--.+.++..+ ....||+.+++ |+|.=..|+=-|..
T Consensus 134 v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~------ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~ 207 (319)
T TIGR03439 134 CAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRP------EAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVL 207 (319)
T ss_pred EEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHH------HHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHH
Confidence 8877664322 11 11101111122333323355555421 23579999987 89975554433332
Q ss_pred --CCC-CChhHH-HHHHHHHHHHHhhh
Q 008988 422 --TNT-SPFFHR-FLETLDYYTAMFES 444 (547)
Q Consensus 422 --~ns-~~F~~R-F~EaL~yYsAlFDS 444 (547)
.|. .....+ ..+.|.+--..+++
T Consensus 208 ~AY~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 208 RAYNDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred HHhcCCcchhHHHHHHHHHHHHHHhCc
Confidence 122 233333 35666666666654
No 64
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=49.65 E-value=31 Score=25.75 Aligned_cols=39 Identities=26% Similarity=0.460 Sum_probs=25.1
Q ss_pred ceEEEeecc-cccCCCCCCccccchHHHHHHHHHhcCCcEEEEEec
Q 008988 374 EAVVVNFPF-VLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQ 418 (547)
Q Consensus 374 EaLaVN~~~-~LHhl~desvs~~n~rd~~L~~Vk~L~PkvvtlvEq 418 (547)
|.+-|||.. .++ +. ....++.++.+|+.++|+-+++|-.
T Consensus 1 e~i~v~a~v~~~~-fS-----gHad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 1 EMIPVRARVEQID-FS-----GHADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp CEEE--SEEEESG-CS-----SS-BHHHHHHHHHHHCSSEEEEESS
T ss_pred CEEEeEEEEEEEe-ec-----CCCCHHHHHHHHHhcCCCEEEEecC
Confidence 345667644 333 32 2345889999999999999998843
No 65
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=48.93 E-value=1.2e+02 Score=29.15 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=60.0
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEecccccccc
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVE 364 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~ 364 (547)
--|+|+|.|.|.=. -.||.+. |...++||+.... .++.+.++ ++..|++ ..+.+..+..++.
T Consensus 18 ~~ilDiGcG~G~~~----~~la~~~---p~~~v~gvD~~~~------~l~~a~~~----~~~~~l~-ni~~i~~d~~~~~ 79 (194)
T TIGR00091 18 PLHLEIGCGKGRFL----IDMAKQN---PDKNFLGIEIHTP------IVLAANNK----ANKLGLK-NLHVLCGDANELL 79 (194)
T ss_pred ceEEEeCCCccHHH----HHHHHhC---CCCCEEEEEeeHH------HHHHHHHH----HHHhCCC-CEEEEccCHHHHH
Confidence 46999999998643 3444442 5678999997542 24444333 3445554 2233333332221
Q ss_pred cccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEEEEEecCCCCCCCChhHHHHHHHHH
Q 008988 365 RQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVVTLVEQESKTNTSPFFHRFLETLDY 437 (547)
Q Consensus 365 ~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~PkvvtlvEqEan~ns~~F~~RF~EaL~y 437 (547)
...+.-..=..|.+|++.-.+.-... ...-..+.+|+.+ +.|+|.-.+.+. ++...+...+.+++..
T Consensus 80 ~~~~~~~~~d~v~~~~pdpw~k~~h~--~~r~~~~~~l~~~~r~LkpgG~l~~~----td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 80 DKFFPDGSLSKVFLNFPDPWPKKRHN--KRRITQPHFLKEYANVLKKGGVIHFK----TDNEPLFEDMLKVLSE 147 (194)
T ss_pred HhhCCCCceeEEEEECCCcCCCCCcc--ccccCCHHHHHHHHHHhCCCCEEEEE----eCCHHHHHHHHHHHHh
Confidence 11111001135666654211100000 0000014577765 777998665543 2333344444555444
No 66
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=48.27 E-value=1.6e+02 Score=30.42 Aligned_cols=114 Identities=14% Similarity=0.115 Sum_probs=62.3
Q ss_pred HHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCce
Q 008988 272 NVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPF 351 (547)
Q Consensus 272 NqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpF 351 (547)
...|+|.+.=+.-=||+|+|.| |-.++..+|.+.| .++|||..+.. --+...+.++..|++-
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~~----------Q~~~a~~~~~~~gl~~ 112 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSEE----------QAEYARERIREAGLED 112 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-HH----------HHHHHHHHHHCSTSSS
T ss_pred HHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCHH----------HHHHHHHHHHhcCCCC
Confidence 4456666654455589998765 7788889998863 68999986531 1233445566778863
Q ss_pred EEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEEEEEe
Q 008988 352 EFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVVTLVE 417 (547)
Q Consensus 352 eF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~PkvvtlvE 417 (547)
....+..+..+++. .=| + |-+.-.+-|+..+ ..+.|++.+ +-|+|.-..++.
T Consensus 113 ~v~v~~~D~~~~~~-----~fD-~--IvSi~~~Ehvg~~------~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 113 RVEVRLQDYRDLPG-----KFD-R--IVSIEMFEHVGRK------NYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp TEEEEES-GGG--------S-S-E--EEEESEGGGTCGG------GHHHHHHHHHHHSETTEEEEEE
T ss_pred ceEEEEeeccccCC-----CCC-E--EEEEechhhcChh------HHHHHHHHHHHhcCCCcEEEEE
Confidence 33222233333222 122 2 2233457777532 256677777 678999666553
No 67
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=48.08 E-value=1.9e+02 Score=28.67 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=22.0
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
-.|+|.|.|.|.- ...||.+ -..+||||.+.
T Consensus 36 ~rvLd~GCG~G~d----a~~LA~~-----G~~V~gvD~S~ 66 (213)
T TIGR03840 36 ARVFVPLCGKSLD----LAWLAEQ-----GHRVLGVELSE 66 (213)
T ss_pred CeEEEeCCCchhH----HHHHHhC-----CCeEEEEeCCH
Confidence 4899999999832 3345655 25899999765
No 68
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=46.69 E-value=75 Score=34.83 Aligned_cols=152 Identities=21% Similarity=0.335 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhCCCceEEEEecccc-ccccccc----ccccCC-ceEEEeecccccCCCCCCccccchHHHHHHHHHhcC
Q 008988 336 VGKRLSEFAASCNVPFEFQDTAMTA-CEVERQH----LRVQPG-EAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLS 409 (547)
Q Consensus 336 tG~rL~~fA~s~gvpFeF~~V~~~~-~ev~~~~----L~i~~g-EaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~ 409 (547)
-|+|+.+.|+.+|.+...-.+. + +-++++. |.-.++ .+|+|- |. +-|..+-||.+.+=..+|+-
T Consensus 91 FG~R~~~ia~~~g~~v~~~~~~--wg~~v~p~~v~~~L~~~~~~~~V~~v-----H~--ETSTGvlnpl~~I~~~~k~~- 160 (383)
T COG0075 91 FGERFAEIAERYGAEVVVLEVE--WGEAVDPEEVEEALDKDPDIKAVAVV-----HN--ETSTGVLNPLKEIAKAAKEH- 160 (383)
T ss_pred HHHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcCCCccEEEEE-----ec--cCcccccCcHHHHHHHHHHc-
Confidence 6999999999999987765543 3 2244433 331122 123322 21 33445578999999999998
Q ss_pred CcEEEEEecCCC-----------------------CCCCC------hhHHHHHHHH------HHHHHhhhhhcc-----C
Q 008988 410 PKVVTLVEQESK-----------------------TNTSP------FFHRFLETLD------YYTAMFESIDVT-----R 449 (547)
Q Consensus 410 PkvvtlvEqEan-----------------------~ns~~------F~~RF~EaL~------yYsAlFDSLDa~-----l 449 (547)
..+++|+--+. ...|| +-+|..|++. ||.-+.+-++.. .
T Consensus 161 -g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~ 239 (383)
T COG0075 161 -GALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGST 239 (383)
T ss_pred -CCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCC
Confidence 45555553221 01222 4577777776 665555444321 2
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhhccc-ccccccccchhhH-HHHHHhCCCcccc
Q 008988 450 PRDDKQRISAEQHCVARDIVNMIACEG-IERVERHELLGKW-RSRFMMAGFTPYR 502 (547)
Q Consensus 450 pr~~~eRi~vE~~~l~reI~NiVAcEG-~eRvERhE~~~~W-r~R~~~AGF~~~p 502 (547)
|-..+--. .+--++-.+.|.-|| ..|.+||.....+ |+.++..||+.++
T Consensus 240 p~Tppv~~----i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~ 290 (383)
T COG0075 240 PYTPPVNL----IYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA 290 (383)
T ss_pred CCCCCHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 21211111 011133345566788 6789999987655 5677889999887
No 69
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=46.01 E-value=80 Score=27.89 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=24.5
Q ss_pred CCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEE
Q 008988 372 PGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVT 414 (547)
Q Consensus 372 ~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~Pkvvt 414 (547)
.+..-+...++..|- ....+..+|+.|+|+-|+
T Consensus 71 ~~~~~~~~VPYSeHS----------Sf~EL~~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 71 RGNVRIYRVPYSEHS----------SFSELKEFVSFLKPKKII 103 (110)
T ss_pred CCCceEEEEecccCC----------CHHHHHHHHHhcCCcEEE
Confidence 355566666666663 367899999999999876
No 70
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=44.49 E-value=95 Score=33.88 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=60.6
Q ss_pred HHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEE
Q 008988 274 VIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEF 353 (547)
Q Consensus 274 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 353 (547)
.+++.+.....=.|+|+|.|.|. +--.|+.+. |..+||+||.+.. .++.+.+++......-.-.++|
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~~------Av~~A~~N~~~n~~~~~~~v~~ 285 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESPM------AVASSRLNVETNMPEALDRCEF 285 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccH----HHHHHHHhC---CCCEEEEEECCHH------HHHHHHHHHHHcCcccCceEEE
Confidence 34455432212279999999997 333555553 5789999998642 3555555543221100013444
Q ss_pred EEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHH-HHHHhcCCcEEEEEe
Q 008988 354 QDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLL-RLVKSLSPKVVTLVE 417 (547)
Q Consensus 354 ~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L-~~Vk~L~PkvvtlvE 417 (547)
.. .+.. +.+.-..=+.|+.|-+|.-.|-.. .+...+++ ..-+.|+|.-...++
T Consensus 286 ~~--~D~l----~~~~~~~fDlIlsNPPfh~~~~~~-----~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 286 MI--NNAL----SGVEPFRFNAVLCNPPFHQQHALT-----DNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EE--cccc----ccCCCCCEEEEEECcCcccCccCC-----HHHHHHHHHHHHHhcccCCEEEEE
Confidence 32 2211 111111225788888874333211 11223444 455688998555444
No 71
>PRK14968 putative methyltransferase; Provisional
Probab=42.75 E-value=2.8e+02 Score=25.65 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=23.9
Q ss_pred ceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 283 HIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 283 ~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
+.-.|+|+|.|.|. +...|+.+ + .+|||++.+.
T Consensus 23 ~~~~vLd~G~G~G~----~~~~l~~~-~----~~v~~~D~s~ 55 (188)
T PRK14968 23 KGDRVLEVGTGSGI----VAIVAAKN-G----KKVVGVDINP 55 (188)
T ss_pred CCCEEEEEccccCH----HHHHHHhh-c----ceEEEEECCH
Confidence 33469999999998 45566665 2 5899998653
No 72
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=40.77 E-value=2.3e+02 Score=27.64 Aligned_cols=78 Identities=26% Similarity=0.335 Sum_probs=42.8
Q ss_pred eeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-eEEEEecccccc
Q 008988 284 IIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP-FEFQDTAMTACE 362 (547)
Q Consensus 284 rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~e 362 (547)
..+|+|+|.|.|. +.-.|+.+. |..++|||+.+.. .++.+ .+.++..|++ ++|.. .+..+
T Consensus 88 ~~~ilDig~G~G~----~~~~l~~~~---~~~~v~~iD~~~~------~~~~a----~~~~~~~~~~~~~~~~--~d~~~ 148 (251)
T TIGR03534 88 PLRVLDLGTGSGA----IALALAKER---PDARVTAVDISPE------ALAVA----RKNAARLGLDNVTFLQ--SDWFE 148 (251)
T ss_pred CCeEEEEeCcHhH----HHHHHHHHC---CCCEEEEEECCHH------HHHHH----HHHHHHcCCCeEEEEE--Cchhc
Confidence 3589999999983 334444432 4569999996532 23333 3344556665 44432 22211
Q ss_pred cccccccccCCceEEEeecccc
Q 008988 363 VERQHLRVQPGEAVVVNFPFVL 384 (547)
Q Consensus 363 v~~~~L~i~~gEaLaVN~~~~L 384 (547)
.+.-..-+.|+.|.++..
T Consensus 149 ----~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 149 ----PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred ----cCcCCceeEEEECCCCCc
Confidence 111123467888877653
No 73
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=40.60 E-value=3.7e+02 Score=28.04 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=56.4
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-eEEEEeccccccc
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP-FEFQDTAMTACEV 363 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~ev 363 (547)
-+|+|++.|.|. +--.||.+ + -+++||+.+.. .++.+. +-|+..|++ .+|... +..++
T Consensus 175 ~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s~~------av~~A~----~n~~~~~l~~v~~~~~--D~~~~ 233 (315)
T PRK03522 175 RSMWDLFCGVGG----FGLHCATP-G----MQLTGIEISAE------AIACAK----QSAAELGLTNVQFQAL--DSTQF 233 (315)
T ss_pred CEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCCHH------HHHHHH----HHHHHcCCCceEEEEc--CHHHH
Confidence 579999999985 33445553 2 37999997542 244433 344556774 666443 22222
Q ss_pred ccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 008988 364 ERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVE 417 (547)
Q Consensus 364 ~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~PkvvtlvE 417 (547)
... . ...-++|++|=+ ... --+.++..+..++|+-++.+.
T Consensus 234 ~~~-~-~~~~D~Vv~dPP-------r~G-----~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 234 ATA-Q-GEVPDLVLVNPP-------RRG-----IGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred HHh-c-CCCCeEEEECCC-------CCC-----ccHHHHHHHHHcCCCeEEEEE
Confidence 111 1 112357777722 111 124677888999999888775
No 74
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=39.61 E-value=97 Score=31.71 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=36.2
Q ss_pred hhCchhhHHH-HHHHHHHHH----hhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 259 QICPYWKFAY-MSANVVIGE----AVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 259 e~sP~~kFa~-~tANqAILE----A~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
.+.|=-++|. |..|+.|++ .+.-.+.-+|+|+|.|.|. +...|+.+ ++ ++|||+.+.
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~---~v~avE~d~ 74 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA---KVTAVEIDR 74 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC---cEEEEECCH
Confidence 3455555665 555555554 3333345689999999884 55566666 22 899999764
No 75
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=39.28 E-value=1e+02 Score=30.36 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=69.0
Q ss_pred ceeEEEEeccc---CccchHHHHHHHhcCCCCCCeEEE------EeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEE
Q 008988 283 HIIHIIDFQIA---QGTQWMFLLHALAKRPGGSPLVRI------TGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEF 353 (547)
Q Consensus 283 ~rVHIIDf~I~---~G~QWpsLiqaLA~RpggPP~LRI------TgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF 353 (547)
.+|+||.|=-+ -.-.=.++|.+|+.+ .+.+ |||+... ....++.-+..|+++.++.|-|
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd-------~~~~~~~fVk~fie~~~~~~P~ 126 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADD-------AIVGTGMFVKSSAKKGKKENPW 126 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECcc-------chhhHHHHHHHHHHHhcccCCc
Confidence 47899998543 334556899999655 2666 8887432 2566888899999999988887
Q ss_pred EEecccccccccccccccC-Cce-EEEeecccccCCCCCCccccchHHHHHHHHHhc
Q 008988 354 QDTAMTACEVERQHLRVQP-GEA-VVVNFPFVLHHMPDESVSTENHRDRLLRLVKSL 408 (547)
Q Consensus 354 ~~V~~~~~ev~~~~L~i~~-gEa-LaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L 408 (547)
-.+..+..-......++.. .++ ++||-.-.+...-....+ ....+.++..|++|
T Consensus 127 ~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~-~ee~e~~~~li~~l 182 (184)
T TIGR01626 127 SQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALS-DSDIQTVISLVNGL 182 (184)
T ss_pred ceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCC-HHHHHHHHHHHHHH
Confidence 7776654322233455543 356 577765544333222222 22234567776654
No 76
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=37.16 E-value=2.9e+02 Score=28.43 Aligned_cols=120 Identities=17% Similarity=0.292 Sum_probs=68.4
Q ss_pred cceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEE-Eecccc
Q 008988 282 EHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQ-DTAMTA 360 (547)
Q Consensus 282 e~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~-~V~~~~ 360 (547)
..++-+...|+|.|.-.+-+ .-.|-.|||+||+.. .+++... ..+|+. .|.+|. -|....
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy--------~~~p~~svt~lDpn~-------~mee~~~--ks~~E~--k~~~~~~fvva~g 135 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFY--------PWKPINSVTCLDPNE-------KMEEIAD--KSAAEK--KPLQVERFVVADG 135 (252)
T ss_pred cCccceEEecccCCCCcccc--------cCCCCceEEEeCCcH-------HHHHHHH--HHHhhc--cCcceEEEEeech
Confidence 45788899999888532211 112788999999753 3444433 234444 665655 344444
Q ss_pred cccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCc-EEEEEecCCCCCCCChhHHHHHH
Q 008988 361 CEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPK-VVTLVEQESKTNTSPFFHRFLET 434 (547)
Q Consensus 361 ~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pk-vvtlvEqEan~ns~~F~~RF~Ea 434 (547)
+++. ++..|-.=+|-|.|.|-.. .++++ .|+.+ |-|+|. ++++.|..+... .|..|+..+
T Consensus 136 e~l~----~l~d~s~DtVV~TlvLCSv-------e~~~k-~L~e~~rlLRpgG~iifiEHva~~y--~~~n~i~q~ 197 (252)
T KOG4300|consen 136 ENLP----QLADGSYDTVVCTLVLCSV-------EDPVK-QLNEVRRLLRPGGRIIFIEHVAGEY--GFWNRILQQ 197 (252)
T ss_pred hcCc----ccccCCeeeEEEEEEEecc-------CCHHH-HHHHHHHhcCCCcEEEEEecccccc--hHHHHHHHH
Confidence 4431 1334444455566665433 34554 45555 557998 566888766544 366666543
No 77
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=35.32 E-value=4.1e+02 Score=29.17 Aligned_cols=101 Identities=14% Similarity=0.201 Sum_probs=56.4
Q ss_pred cceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-eEEEEecccc
Q 008988 282 EHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP-FEFQDTAMTA 360 (547)
Q Consensus 282 e~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~ 360 (547)
.+.-+|+|++.|-|. +--.||.+. -+++||+.+.. .++.+.++ |+..|+. .+|..- +.
T Consensus 296 ~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s~~------al~~A~~n----~~~~~~~~v~~~~~--d~ 354 (443)
T PRK13168 296 QPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGVEA------MVERAREN----ARRNGLDNVTFYHA--NL 354 (443)
T ss_pred CCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCCHH------HHHHHHHH----HHHcCCCceEEEEe--Ch
Confidence 344589999999996 223456542 38999997642 34444433 3444553 455433 22
Q ss_pred cccccccccc--cCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 008988 361 CEVERQHLRV--QPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVE 417 (547)
Q Consensus 361 ~ev~~~~L~i--~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~PkvvtlvE 417 (547)
.+. ...+.. ..-++|++|=+.. ..+.++..+.+++|+-++.|.
T Consensus 355 ~~~-l~~~~~~~~~fD~Vi~dPPr~-------------g~~~~~~~l~~~~~~~ivyvS 399 (443)
T PRK13168 355 EED-FTDQPWALGGFDKVLLDPPRA-------------GAAEVMQALAKLGPKRIVYVS 399 (443)
T ss_pred HHh-hhhhhhhcCCCCEEEECcCCc-------------ChHHHHHHHHhcCCCeEEEEE
Confidence 211 011111 1225677663321 134567888889999888875
No 78
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=35.17 E-value=4.7e+02 Score=28.14 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=54.3
Q ss_pred EEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-eEEEEecccccccc
Q 008988 286 HIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP-FEFQDTAMTACEVE 364 (547)
Q Consensus 286 HIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp-FeF~~V~~~~~ev~ 364 (547)
.|+|++.|.|. +--+||.+ + -+++||+-+.. .++.+.+ -|+..|+. .+|.. .+..+..
T Consensus 236 ~vLDL~cG~G~----~~l~la~~-~----~~v~~vE~~~~------av~~a~~----N~~~~~~~~~~~~~--~d~~~~~ 294 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP-D----TQLTGIEIESE------AIACAQQ----SAQMLGLDNLSFAA--LDSAKFA 294 (374)
T ss_pred EEEEccCCccH----HHHHHhhc-C----CeEEEEECCHH------HHHHHHH----HHHHcCCCcEEEEE--CCHHHHH
Confidence 68999988883 22344433 2 37999996543 2444433 34455663 55533 2222211
Q ss_pred cccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEEe
Q 008988 365 RQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVE 417 (547)
Q Consensus 365 ~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~PkvvtlvE 417 (547)
.. + ...-++|++|=+.. ..-..++..+..++|+-++.|+
T Consensus 295 ~~-~-~~~~D~vi~DPPr~------------G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 295 TA-Q-MSAPELVLVNPPRR------------GIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred Hh-c-CCCCCEEEECCCCC------------CCcHHHHHHHHhcCCCeEEEEE
Confidence 11 1 11246788884321 1124678888899999888876
No 79
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=34.32 E-value=2.7e+02 Score=30.00 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=23.3
Q ss_pred ceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 283 HIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 283 ~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
...+|+|+|.|.|.-.. .|+.+.+ ..++|+||.+.
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~---~~~VtgVD~S~ 147 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVD---AKNVTILDQSP 147 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCC---CCEEEEEECCH
Confidence 35689999999997433 3343322 25899999753
No 80
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.99 E-value=27 Score=37.49 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=25.2
Q ss_pred ceEEEeecccccCCCCCCccccchHH-HHHHHHHhcCCcEEEEE
Q 008988 374 EAVVVNFPFVLHHMPDESVSTENHRD-RLLRLVKSLSPKVVTLV 416 (547)
Q Consensus 374 EaLaVN~~~~LHhl~desvs~~n~rd-~~L~~Vk~L~Pkvvtlv 416 (547)
|-=.||.++ .+...|+... ...+ .++-.++..+|++|++.
T Consensus 206 ~g~~vNiPL-p~g~~d~~y~--~a~~~~v~~~~~~f~Pdlvivs 246 (340)
T COG0123 206 EGNNVNIPL-PPGTGDDSYL--EALEEIVLPLLEEFKPDLVIVS 246 (340)
T ss_pred ccceEeeec-CCCCCcHHHH--HHHHHHHHHHHHhcCCCEEEEe
Confidence 557788776 4545554321 1223 36778889999988865
No 81
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=33.65 E-value=47 Score=35.84 Aligned_cols=90 Identities=26% Similarity=0.447 Sum_probs=52.4
Q ss_pred CCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCc-EEEEEecCCCCCCCChhHHHHHHHHHHHHHhhhhhccC
Q 008988 372 PGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPK-VVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTR 449 (547)
Q Consensus 372 ~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pk-vvtlvEqEan~ns~~F~~RF~EaL~yYsAlFDSLDa~l 449 (547)
+++++. ..+.|||+.|+. --.||+.. ++|.|+ .|+++|.-..... .||-+|...
T Consensus 236 ~~daI~--mkWiLhdwtDed------cvkiLknC~~sL~~~GkIiv~E~V~p~e~----------------~~dd~~s~v 291 (342)
T KOG3178|consen 236 KGDAIW--MKWILHDWTDED------CVKILKNCKKSLPPGGKIIVVENVTPEED----------------KFDDIDSSV 291 (342)
T ss_pred CcCeEE--EEeecccCChHH------HHHHHHHHHHhCCCCCEEEEEeccCCCCC----------------Cccccccce
Confidence 455444 456899999863 23566665 788998 5567775333211 122222221
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhhcc-cccccccccchhhHHHHHHhCCCccccC
Q 008988 450 PRDDKQRISAEQHCVARDIVNMIACE-GIERVERHELLGKWRSRFMMAGFTPYRL 503 (547)
Q Consensus 450 pr~~~eRi~vE~~~l~reI~NiVAcE-G~eRvERhE~~~~Wr~R~~~AGF~~~pL 503 (547)
. +..++.=.+-|+ |.||+ ..+|+.-+..+||..+.+
T Consensus 292 --------~-----~~~d~lm~~~~~~Gkert-----~~e~q~l~~~~gF~~~~~ 328 (342)
T KOG3178|consen 292 --------T-----RDMDLLMLTQTSGGKERT-----LKEFQALLPEEGFPVCMV 328 (342)
T ss_pred --------e-----ehhHHHHHHHhccceecc-----HHHHHhcchhhcCceeEE
Confidence 1 122222234466 77766 468999999999976543
No 82
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=33.14 E-value=91 Score=31.55 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=42.0
Q ss_pred hCchhh---HHHHHHHHHHHHhhhcc-ceeEEEEecccCccchHHHHHHHhcC--CCCCCeEEEEeecCCCCCCCCCchH
Q 008988 260 ICPYWK---FAYMSANVVIGEAVENE-HIIHIIDFQIAQGTQWMFLLHALAKR--PGGSPLVRITGIDDSQSTHARGGGL 333 (547)
Q Consensus 260 ~sP~~k---Fa~~tANqAILEA~~ge-~rVHIIDf~I~~G~QWpsLiqaLA~R--pggPP~LRITgI~~~~s~~~~~~~L 333 (547)
-.|+.| ..|++|-..-.++++.. -.||.|.++=..+.| +|.+.|+.- ..++-.|.++-.++
T Consensus 36 ~~~~HkqKl~l~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~--s~~~~L~~~~~~~~~~~~~~~~P~d----------- 102 (224)
T PF04244_consen 36 YVPHHKQKLVLFFSAMRHFADELRAKGFRVHYIELDDPENTQ--SFEDALARALKQHGIDRLHVMEPGD----------- 102 (224)
T ss_dssp SS---HHHHHHHHHHHHHHHHHHHHTT--EEEE-TT-TT--S--SHHHHHHHHHHHH----EEEE--S------------
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCccccc--cHHHHHHHHHHHcCCCEEEEECCCC-----------
Confidence 456653 45678888999999865 479999999654443 444444321 12455677775543
Q ss_pred HHHHHHHHHHHHhCCCceEEEE
Q 008988 334 DIVGKRLSEFAASCNVPFEFQD 355 (547)
Q Consensus 334 ~~tG~rL~~fA~s~gvpFeF~~ 355 (547)
..+.++|.++++.+||+.++..
T Consensus 103 ~~l~~~l~~~~~~~~i~~~~~~ 124 (224)
T PF04244_consen 103 YRLEQRLESLAQQLGIPLEVLE 124 (224)
T ss_dssp HHHHHHHHH----SSS-EEEE-
T ss_pred HHHHHHHHhhhcccCCceEEeC
Confidence 3467899999999999998754
No 83
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=31.56 E-value=1.2e+02 Score=31.18 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=53.1
Q ss_pred HHHHHHhhhhhc-cCCCCcHH-HHHHHHHHHHHhhhhhhhccccccccc-ccchhhHHHHHHhCCCccccCChHHHHHHH
Q 008988 436 DYYTAMFESIDV-TRPRDDKQ-RISAEQHCVARDIVNMIACEGIERVER-HELLGKWRSRFMMAGFTPYRLSPLVTNAVR 512 (547)
Q Consensus 436 ~yYsAlFDSLDa-~lpr~~~e-Ri~vE~~~l~reI~NiVAcEG~eRvER-hE~~~~Wr~R~~~AGF~~~pLS~~~~~qak 512 (547)
+.+.-.-+-|.. .++-.-++ |.++|. -.++|.|+|+..+.+..-+ +-+-..=..-|..|||..-|+.+ +..|+.
T Consensus 71 d~~eI~~eIl~kGeiQlTaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~ 147 (234)
T COG1500 71 DPDEIAEEILKKGEIQLTAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQ 147 (234)
T ss_pred CHHHHHHHHHhcCceeccHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHH
Confidence 333444444443 23333444 444565 5899999999998877655 56667778889999999999976 567776
Q ss_pred HHHhc
Q 008988 513 DVLKD 517 (547)
Q Consensus 513 ~LL~~ 517 (547)
..|+.
T Consensus 148 evlK~ 152 (234)
T COG1500 148 EVLKA 152 (234)
T ss_pred HHHHH
Confidence 66654
No 84
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=31.21 E-value=54 Score=34.10 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=21.2
Q ss_pred hccceeEEEEecccCccchHHHHHHHhc
Q 008988 280 ENEHIIHIIDFQIAQGTQWMFLLHALAK 307 (547)
Q Consensus 280 ~ge~rVHIIDf~I~~G~QWpsLiqaLA~ 307 (547)
.|.+.+||||+|-+.+.+ ..+|.+++.
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 478999999999866777 556777766
No 85
>PTZ00063 histone deacetylase; Provisional
Probab=30.64 E-value=34 Score=38.01 Aligned_cols=149 Identities=14% Similarity=0.106 Sum_probs=75.5
Q ss_pred HHHHhhhccceeEEEEecc--cCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCce
Q 008988 274 VIGEAVENEHIIHIIDFQI--AQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPF 351 (547)
Q Consensus 274 AILEA~~ge~rVHIIDf~I--~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpF 351 (547)
||+++.+..+||=|||||+ |.|+|+. +... |.+-.-.+..-...+...+...++|..-.+ .-.+|||+
T Consensus 156 Ai~~L~~~~~RVliID~DvHHGdGtqe~-----F~~~----~~VltvS~H~~~~ffPgtG~~~e~G~g~G~-g~~vNvPL 225 (436)
T PTZ00063 156 GILELLKYHARVMYIDIDVHHGDGVEEA-----FYVT----HRVMTVSFHKFGDFFPGTGDVTDIGVAQGK-YYSVNVPL 225 (436)
T ss_pred HHHHHHHhCCeEEEEeCCCCCCcchHHH-----hccC----CCeEEEEeccCCCcCCCCCCccccCCCCCC-ceEEEeeC
Confidence 4566666668999999999 5568864 3332 333333343211111112334555421100 01245554
Q ss_pred EEEEecccccc----ccc---ccccccCCceEEEeecccccCC---CCCCccccchHHHHHHHHHhcCCcEEEEEecCCC
Q 008988 352 EFQDTAMTACE----VER---QHLRVQPGEAVVVNFPFVLHHM---PDESVSTENHRDRLLRLVKSLSPKVVTLVEQESK 421 (547)
Q Consensus 352 eF~~V~~~~~e----v~~---~~L~i~~gEaLaVN~~~~LHhl---~desvs~~n~rd~~L~~Vk~L~PkvvtlvEqEan 421 (547)
.=. +..++ ++. ..+..-.=|+|+|.|-+=-|.- ..-.++... ...+++.+++++..++++.|..=+
T Consensus 226 ~~G---~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g-~~~~~~~~~~~~~pil~l~gGGY~ 301 (436)
T PTZ00063 226 NDG---IDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKG-HAACVEFVRSLNIPLLVLGGGGYT 301 (436)
T ss_pred CCC---CCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHH-HHHHHHHHHhcCCCEEEEeCccCC
Confidence 311 00011 000 1111112368888886643321 111223223 345788999999888888875544
Q ss_pred CCCCChhHHHHHHHHHHHHHh
Q 008988 422 TNTSPFFHRFLETLDYYTAMF 442 (547)
Q Consensus 422 ~ns~~F~~RF~EaL~yYsAlF 442 (547)
. .....++.|.+++.
T Consensus 302 ~------~~lar~w~~~t~~~ 316 (436)
T PTZ00063 302 I------RNVARCWAYETGVI 316 (436)
T ss_pred c------hHHHHHHHHHHHHH
Confidence 2 33667788888776
No 86
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=30.13 E-value=4.6e+02 Score=28.02 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=61.0
Q ss_pred ceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhC---CCceEEEEecc-
Q 008988 283 HIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASC---NVPFEFQDTAM- 358 (547)
Q Consensus 283 ~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~---gvpFeF~~V~~- 358 (547)
...+|+|++.|.|.= |..-...+ -=++.|||.+. ..++++.+|..+.-+.. ...+.|.+...
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~~-----i~~~vg~Dis~------~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKAK-----IKHYVGIDISE------ESIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHTT------SEEEEEES-H------HHHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred CCCeEEEecCCCchh---HHHHHhcC-----CCEEEEEeCCH------HHHHHHHHHHHHhccccccccccccchhheec
Confidence 678999999998852 22222222 23677888754 36899999886665432 23344443322
Q ss_pred -ccccccc-ccccccCCceEEEeecccccCCCCCCccccchHHHHHHHH-HhcCCcEE
Q 008988 359 -TACEVER-QHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLV-KSLSPKVV 413 (547)
Q Consensus 359 -~~~ev~~-~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~V-k~L~Pkvv 413 (547)
+.....+ +.+.-..+..=+|+|.|.||++-.. +.....+|+.| +.|+|.-+
T Consensus 128 ~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fes----e~~ar~~l~Nvs~~Lk~GG~ 181 (331)
T PF03291_consen 128 ADCFSESLREKLPPRSRKFDVVSCQFALHYAFES----EEKARQFLKNVSSLLKPGGY 181 (331)
T ss_dssp STTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSS----HHHHHHHHHHHHHTEEEEEE
T ss_pred cccccchhhhhccccCCCcceeehHHHHHHhcCC----HHHHHHHHHHHHHhcCCCCE
Confidence 2111111 2222223577799999999998542 22233455555 78899844
No 87
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=29.94 E-value=2.2e+02 Score=29.82 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=25.4
Q ss_pred HHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 274 VIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 274 AILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
.|++++.-...=.|+|+|.|.|.-- ..|+.+. -+++||+-+.
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT----~~Ll~~~-----~~V~avEiD~ 68 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLT----EKLLQLA-----KKVIAIEIDP 68 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHH----HHHHHhC-----CcEEEEECCH
Confidence 3444443333346999999988744 4444442 2689998653
No 88
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=29.82 E-value=3e+02 Score=27.43 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=24.8
Q ss_pred ccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 281 NEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 281 ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
..+..+|+|+|.|.|.=-. .|+... |..++||+|.+.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~----~la~~~---~~~~v~~iDis~ 142 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIAL----ALAKER---PDAEVTAVDISP 142 (275)
T ss_pred ccCCCEEEEEcCcHHHHHH----HHHHHC---CCCEEEEEECCH
Confidence 3455789999999996333 333322 457899999654
No 89
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=29.56 E-value=91 Score=26.58 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=22.5
Q ss_pred EEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 286 HIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 286 HIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
+|+|+|.|.|.. ...|+.+. |..++||||.+.
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s~ 53 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERNP 53 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCCH
Confidence 899999988754 33344442 347899999754
No 90
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=29.18 E-value=65 Score=33.33 Aligned_cols=26 Identities=8% Similarity=-0.091 Sum_probs=18.2
Q ss_pred hccceeEEEEecccCccchHHHHHHHhcCC
Q 008988 280 ENEHIIHIIDFQIAQGTQWMFLLHALAKRP 309 (547)
Q Consensus 280 ~ge~rVHIIDf~I~~G~QWpsLiqaLA~Rp 309 (547)
.|.+.|||||+ +.+ ++ .+|..+++-.
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 48899999999 444 65 5566665543
No 91
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=28.72 E-value=34 Score=28.39 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=16.7
Q ss_pred cchhhHHHHHHhCCCccccC
Q 008988 484 ELLGKWRSRFMMAGFTPYRL 503 (547)
Q Consensus 484 E~~~~Wr~R~~~AGF~~~pL 503 (547)
++..+-|.+|+++|++|+.+
T Consensus 3 ~RV~khR~~lRa~GLRPVqi 22 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQI 22 (65)
T ss_pred HHHHHHHHHHHHcCCCccee
Confidence 34566789999999999987
No 92
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=28.65 E-value=1.1e+02 Score=29.52 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=44.6
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhhc
Q 008988 177 LKQVLIFCA-QAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLE 230 (547)
Q Consensus 177 L~~LLl~CA-eAV~~gd~~~A~~lL~~L~~~aS~~Gdp~qRlaaYF~eAL~aRl~ 230 (547)
+..+|+.|. -++..++...|..++..|..+.-|..+-..|+..-|.+||..=..
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~ 181 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKE 181 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHc
Confidence 556666666 677888999999999999998877777889999999999975443
No 93
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=28.63 E-value=29 Score=37.71 Aligned_cols=16 Identities=44% Similarity=0.891 Sum_probs=12.8
Q ss_pred hhccceeEEEEecccC
Q 008988 279 VENEHIIHIIDFQIAQ 294 (547)
Q Consensus 279 ~~ge~rVHIIDf~I~~ 294 (547)
-+.+..|||||||++-
T Consensus 162 ~k~~n~IhiiDFGmAK 177 (449)
T KOG1165|consen 162 TKDANVIHIIDFGMAK 177 (449)
T ss_pred CCCCceEEEEeccchh
Confidence 4567899999999863
No 94
>PLN03075 nicotianamine synthase; Provisional
Probab=28.10 E-value=5.5e+02 Score=27.22 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=56.8
Q ss_pred EEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCC--ceEEEEeccccccc
Q 008988 286 HIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNV--PFEFQDTAMTACEV 363 (547)
Q Consensus 286 HIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gv--pFeF~~V~~~~~ev 363 (547)
.|+|.|.|.|-=|..++.+-. .|.-++||||.+.. ..+..+++.+ +..|+ ..+|+..... ++
T Consensus 126 ~VldIGcGpgpltaiilaa~~-----~p~~~~~giD~d~~-------ai~~Ar~~~~--~~~gL~~rV~F~~~Da~--~~ 189 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHH-----LPTTSFHNFDIDPS-------ANDVARRLVS--SDPDLSKRMFFHTADVM--DV 189 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhc-----CCCCEEEEEeCCHH-------HHHHHHHHhh--hccCccCCcEEEECchh--hc
Confidence 388999998866666554432 24459999997642 2334444332 22343 3566553221 11
Q ss_pred ccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEEec
Q 008988 364 ERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQ 418 (547)
Q Consensus 364 ~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~PkvvtlvEq 418 (547)
.. ...+=+ +|+.. .||++..+ .+.+.|-+..+.|+|.-++++.-
T Consensus 190 ~~---~l~~FD-lVF~~--ALi~~dk~-----~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 190 TE---SLKEYD-VVFLA--ALVGMDKE-----EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cc---ccCCcC-EEEEe--cccccccc-----cHHHHHHHHHHhcCCCcEEEEec
Confidence 00 011112 23322 88888432 33444455557799998888764
No 95
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=27.85 E-value=4.8e+02 Score=26.13 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=29.0
Q ss_pred HHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 273 VVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 273 qAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
..|++++...+.=.|+|+|.|.|. |...|+.+. + ++++|+.+.
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d~ 61 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEIDP 61 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECCH
Confidence 455555554455689999999997 555666553 2 399998653
No 96
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=27.10 E-value=4.3e+02 Score=23.61 Aligned_cols=102 Identities=19% Similarity=0.186 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHhCCCce--EEEEecccccccccccc-----cccCCc--eEEEeecccccCCCCCCccccchHHHHH
Q 008988 332 GLDIVGKRLSEFAASCNVPF--EFQDTAMTACEVERQHL-----RVQPGE--AVVVNFPFVLHHMPDESVSTENHRDRLL 402 (547)
Q Consensus 332 ~L~~tG~rL~~fA~s~gvpF--eF~~V~~~~~ev~~~~L-----~i~~gE--aLaVN~~~~LHhl~desvs~~n~rd~~L 402 (547)
.++.=-+.|.+||+..|.++ .|.-...+....+...| .++.|+ +|+|--.-+|-+-+ ...-.++
T Consensus 16 s~~~Q~~~~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~-------~~~~~~~ 88 (148)
T smart00857 16 SLERQLEALRAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDRLGRSL-------RDLLALL 88 (148)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccchhhCcH-------HHHHHHH
Confidence 45555677999999999876 33333222222222112 256787 77777544433321 1234678
Q ss_pred HHHHhcCCcEEEEEecCCCCCCCChhHHHHHHHHHHHHHh
Q 008988 403 RLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMF 442 (547)
Q Consensus 403 ~~Vk~L~PkvvtlvEqEan~ns~~F~~RF~EaL~yYsAlF 442 (547)
..++.++=+|+++-|.-.+.+ ....++...+....|=+
T Consensus 89 ~~l~~~gi~l~~~~~~~~~~~--~~~~~~~~~i~~~~a~~ 126 (148)
T smart00857 89 ELLEKKGVRLVSVTEGIEDTS--TPAGRLMLDILAALAEF 126 (148)
T ss_pred HHHHHCCCEEEECcCCCCCCC--CHHHHHHHHHHHHHHHH
Confidence 888888877776655432333 33444444444433333
No 97
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=26.69 E-value=4.3e+02 Score=29.14 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=29.9
Q ss_pred HHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 275 IGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 275 ILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
+++.+.+...-.|+|+|.|.|. ++-.||.+. |...++||+-..
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~----~ll~lA~~~---P~~~~iGIEI~~ 156 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGR----HLLYQAKNN---PNKLFIGIEIHT 156 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccH----HHHHHHHhC---CCCCEEEEECCH
Confidence 4445555556678999999984 455666663 567999998653
No 98
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=26.25 E-value=3.4e+02 Score=27.12 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=49.4
Q ss_pred hccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEee-cCCCCCCCCCchHHHHHHHHHHHHHhCCCceEEEEec
Q 008988 280 ENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGI-DDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTA 357 (547)
Q Consensus 280 ~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI-~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~ 357 (547)
++.+.|=+||=.|.-|.=-..+|++|-..-. -.++-+..| |+.. .+-..+..++++.+|+|.+|..+.
T Consensus 119 ~~~~~lVLVDDEiSTG~T~lnli~al~~~~p-~~~yvvasL~d~~~---------~~~~~~~~~~~~~lgi~i~~vsL~ 187 (191)
T PF15609_consen 119 RNARTLVLVDDEISTGNTFLNLIRALHAKYP-RKRYVVASLLDWRS---------EEDRARFEALAEELGIPIDVVSLL 187 (191)
T ss_pred cCCCCEEEEecCccchHHHHHHHHHHHHhCC-CceEEEEEEeeCCC---------HHHHHHHHHHHHHcCCcEEEEEee
Confidence 3466999999999999999999999987632 223333333 3321 234567888999999999998764
No 99
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=25.48 E-value=6.4e+02 Score=27.03 Aligned_cols=92 Identities=24% Similarity=0.374 Sum_probs=52.0
Q ss_pred HHHhhhcc---ceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc-
Q 008988 275 IGEAVENE---HIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP- 350 (547)
Q Consensus 275 ILEA~~ge---~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp- 350 (547)
++|++... +.-||.|.|.|.|.-=.+|+..| |..|+|+||-+.. .+..++++ |+.+++.
T Consensus 137 Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-------~~~~v~AiD~S~~------Ai~La~eN----~qr~~l~g 199 (328)
T KOG2904|consen 137 VIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-------PQCTVTAIDVSKA------AIKLAKEN----AQRLKLSG 199 (328)
T ss_pred HHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-------CCceEEEEeccHH------HHHHHHHH----HHHHhhcC
Confidence 44555432 33489999999998877777766 4689999997653 25555543 4445553
Q ss_pred -eEEEEecccccccccccccccCCceEEEeeccc
Q 008988 351 -FEFQDTAMTACEVERQHLRVQPGEAVVVNFPFV 383 (547)
Q Consensus 351 -FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~ 383 (547)
|+.+-..+..+-..+..+.-.+=..|+-|=++.
T Consensus 200 ~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI 233 (328)
T KOG2904|consen 200 RIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYI 233 (328)
T ss_pred ceEEEecccccccccccccccCceeEEecCCCcc
Confidence 444433232222222223333344566665554
No 100
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=25.19 E-value=2.4e+02 Score=28.60 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=36.9
Q ss_pred hHhHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 247 SSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 247 ~~ell~a~~~l~e~sP~~kFa~~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
..+++.+.+.|.+.- ++..-.-..+..|.+.+. ...-+|+|+|.|.|.--..|.+.+... ....++|||.+.
T Consensus 51 ~~~~~~ar~~fl~~g-~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~ 122 (272)
T PRK11088 51 NKEMMQARRAFLDAG-HYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISK 122 (272)
T ss_pred CHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCH
Confidence 346666666555532 222111111222333322 234579999999997444444433211 125799999754
No 101
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.16 E-value=5.6e+02 Score=23.77 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=9.2
Q ss_pred CeEEEEeecCCCC
Q 008988 313 PLVRITGIDDSQS 325 (547)
Q Consensus 313 P~LRITgI~~~~s 325 (547)
|.+||..++|+-.
T Consensus 1 ~~~~i~~~GDSit 13 (191)
T cd01836 1 PPLRLLVLGDSTA 13 (191)
T ss_pred CCeEEEEEecccc
Confidence 4578888887754
No 102
>PRK09864 putative peptidase; Provisional
Probab=24.79 E-value=1.3e+02 Score=32.48 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCCceEEEEecccccccccccccc-cCC-ceEEEeecccccCCCCCCccc---cchHHHHHHHHHhc
Q 008988 334 DIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRV-QPG-EAVVVNFPFVLHHMPDESVST---ENHRDRLLRLVKSL 408 (547)
Q Consensus 334 ~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev~~~~L~i-~~g-EaLaVN~~~~LHhl~desvs~---~n~rd~~L~~Vk~L 408 (547)
..+-++|.+.|++.|||+++........| ...+.+ +.| -+++|..+.+--|.+.|-++. ++..+.+-..++.|
T Consensus 264 ~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTD--a~~i~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 264 QKLVAALKSCAAHNDLPLQFSTMKTGATD--GGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred HHHHHHHHHHHHHcCCCceEEEcCCCCch--HHHHHHhCCCCcEEEEeeccCcCCCcceEeEHHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999866533322 122222 223 257788889888888876653 23344444445555
Q ss_pred CC
Q 008988 409 SP 410 (547)
Q Consensus 409 ~P 410 (547)
++
T Consensus 342 ~~ 343 (356)
T PRK09864 342 TA 343 (356)
T ss_pred ch
Confidence 43
No 103
>PTZ00346 histone deacetylase; Provisional
Probab=24.71 E-value=50 Score=36.68 Aligned_cols=148 Identities=16% Similarity=0.085 Sum_probs=77.2
Q ss_pred HHHhhhccceeEEEEecc--cCccchHHHHHHHhcCCCCCCeEEEEeec-CCCCCCCCCchHHHHHHHHHHHHHhCCCce
Q 008988 275 IGEAVENEHIIHIIDFQI--AQGTQWMFLLHALAKRPGGSPLVRITGID-DSQSTHARGGGLDIVGKRLSEFAASCNVPF 351 (547)
Q Consensus 275 ILEA~~ge~rVHIIDf~I--~~G~QWpsLiqaLA~RpggPP~LRITgI~-~~~s~~~~~~~L~~tG~rL~~fA~s~gvpF 351 (547)
|+.+.+..+||=|||||+ |.|+|.. +... |.+-.-.+. .+...+...+...++|..--+ .-.+|||+
T Consensus 174 a~~ll~~~~RVliID~DVHHGnGTqei-----F~~d----p~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~-g~~vNVPL 243 (429)
T PTZ00346 174 ILELLKCHDRVLYVDIDMHHGDGVDEA-----FCTS----DRVFTLSLHKFGESFFPGTGHPRDVGYGRGR-YYSMNLAV 243 (429)
T ss_pred HHHHHHcCCeEEEEeCCCCCCchHHHH-----HcCC----CCeEEEEecCCCCCCCCCCCCccccCCCCCc-eeEEeeeC
Confidence 345555668999999999 5668843 4433 344444453 222222222345555531100 01234443
Q ss_pred EEEEecccccc----cc---cccc-cccCCceEEEeecccccCC---CCCCccccchHHHHHHHHHhcCCcEEEEEecCC
Q 008988 352 EFQDTAMTACE----VE---RQHL-RVQPGEAVVVNFPFVLHHM---PDESVSTENHRDRLLRLVKSLSPKVVTLVEQES 420 (547)
Q Consensus 352 eF~~V~~~~~e----v~---~~~L-~i~~gEaLaVN~~~~LHhl---~desvs~~n~rd~~L~~Vk~L~PkvvtlvEqEa 420 (547)
.=.. ...+ ++ ...+ ..+| ++|+|.|-+=-|.- ..-.++. ..-..+.+.+++++.+++++.|..-
T Consensus 244 ~~G~---~D~~Yl~~f~~ii~p~l~~F~P-dlIvvsaG~Da~~~DpLg~l~LT~-~g~~~~~~~l~~~~~plv~vleGGY 318 (429)
T PTZ00346 244 WDGI---TDFYYLGLFEHALHSIVRRYSP-DAIVLQCGADSLAGDRLGLLNLSS-FGHGQCVQAVRDLGIPMLALGGGGY 318 (429)
T ss_pred CCCc---CHHHHHHHHHHHHHHHHHhcCC-CEEEEECCccCCCCCCCCCceeCH-HHHHHHHHHHHhcCCCEEEEeCCcC
Confidence 3110 0000 00 0001 1233 68888886654442 1112222 2334588899999999999887554
Q ss_pred CCCCCChhHHHHHHHHHHHHHhh
Q 008988 421 KTNTSPFFHRFLETLDYYTAMFE 443 (547)
Q Consensus 421 n~ns~~F~~RF~EaL~yYsAlFD 443 (547)
+. ....+++.|.++++-
T Consensus 319 ~~------~~lar~w~~~t~~l~ 335 (429)
T PTZ00346 319 TI------RNVAKLWAYETSILT 335 (429)
T ss_pred Cc------cHHHHHHHHHHHHHc
Confidence 32 347788888888863
No 104
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=24.09 E-value=3.4e+02 Score=20.99 Aligned_cols=31 Identities=39% Similarity=0.594 Sum_probs=21.4
Q ss_pred EEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 008988 286 HIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQ 324 (547)
Q Consensus 286 HIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~ 324 (547)
.|+|+|.+.|. +...++. .+..++++++.+.
T Consensus 1 ~ildig~G~G~----~~~~~~~----~~~~~~~~~d~~~ 31 (107)
T cd02440 1 RVLDLGCGTGA----LALALAS----GPGARVTGVDISP 31 (107)
T ss_pred CeEEEcCCccH----HHHHHhc----CCCCEEEEEeCCH
Confidence 37899888874 4455554 2457999998654
No 105
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=23.66 E-value=9.8e+02 Score=26.11 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=66.5
Q ss_pred HHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc
Q 008988 271 ANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP 350 (547)
Q Consensus 271 ANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp 350 (547)
+-+.+..++.-.+--.|+|++.+.|.--..+.+.+ + .-+|+|+|.+.. .++.+.+ -++..|+.
T Consensus 226 ~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~---~----~~~v~a~D~~~~------~l~~~~~----n~~r~g~~ 288 (426)
T TIGR00563 226 SAQWVATWLAPQNEETILDACAAPGGKTTHILELA---P----QAQVVALDIHEH------RLKRVYE----NLKRLGLT 288 (426)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHc---C----CCeEEEEeCCHH------HHHHHHH----HHHHcCCC
Confidence 45666666664444589999999997766665543 1 248999997542 3444444 44567887
Q ss_pred eEEEEecccccccccccccccCCceEEEeecc----cccCCCCCCccc---------cchHHHHHHHHHhcCCcEEE
Q 008988 351 FEFQDTAMTACEVERQHLRVQPGEAVVVNFPF----VLHHMPDESVST---------ENHRDRLLRLVKSLSPKVVT 414 (547)
Q Consensus 351 FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~----~LHhl~desvs~---------~n~rd~~L~~Vk~L~Pkvvt 414 (547)
.++..+..+..+... ...-..=+.|.++.+. .+|+.|+-.-.. .-+++.+-...+-|+|.-.+
T Consensus 289 ~~v~~~~~d~~~~~~-~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~l 364 (426)
T TIGR00563 289 IKAETKDGDGRGPSQ-WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTL 364 (426)
T ss_pred eEEEEeccccccccc-cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 444333332221111 0011223567776332 366666521100 01233344445668997433
No 106
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=23.65 E-value=4.4e+02 Score=29.21 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=44.5
Q ss_pred ceEEEeecccccCCCCCCccccchHHHHHHHHHhcCCcEEEEEecCCCCCCCChhHHHHHHHHHHHHHhhhhhccCCCCc
Q 008988 374 EAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDD 453 (547)
Q Consensus 374 EaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L~PkvvtlvEqEan~ns~~F~~RF~EaL~yYsAlFDSLDa~lpr~~ 453 (547)
+.++||+.-+.+= .+..+-....|..-+|.+|+.+|.+ |...++.+=.+...| ...-|+..++.-
T Consensus 173 ~~ilIdT~GWi~G--------~~g~elk~~li~~ikP~~Ii~l~~~---~~~~~l~~~~~~~~~----~~~~~~~~~~sR 237 (398)
T COG1341 173 DFILIDTDGWIKG--------WGGLELKRALIDAIKPDLIIALERA---NELSPLLEGVESIVY----LKVPDAVAPRSR 237 (398)
T ss_pred CEEEEcCCCceeC--------chHHHHHHHHHhhcCCCEEEEeccc---cccchhhhcccCceE----EeccccccccCh
Confidence 3567776554331 2346677888899999999999865 333334333344443 333344445555
Q ss_pred HHHHHHHHHHHHHhhh
Q 008988 454 KQRISAEQHCVARDIV 469 (547)
Q Consensus 454 ~eRi~vE~~~l~reI~ 469 (547)
.||...=.+-+++.+.
T Consensus 238 ~ER~~~R~e~~~ryf~ 253 (398)
T COG1341 238 EERKELREEKYRRYFE 253 (398)
T ss_pred hHHHHHHHHHHHHhcc
Confidence 5554332223444443
No 107
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=23.09 E-value=8.2e+02 Score=25.02 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=32.8
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc--eEEEE
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP--FEFQD 355 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp--FeF~~ 355 (547)
.+|+|+|.|.|.--..|.+.+ |..++||+|.+.. .++.+.++ ++..++. ++|..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-------~~~~v~avDis~~------al~~a~~n----~~~~~~~~~v~~~~ 171 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-------PNAEVIAVDISPD------ALAVAEEN----AEKNQLEHRVEFIQ 171 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-------CCCEEEEEECCHH------HHHHHHHH----HHHcCCCCcEEEEE
Confidence 589999999996444443322 3468999997542 24444433 4555664 55543
No 108
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=21.21 E-value=7.2e+02 Score=26.05 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=31.2
Q ss_pred eEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc
Q 008988 285 IHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP 350 (547)
Q Consensus 285 VHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp 350 (547)
.+|+|+|.|.|. +.-+|+.+. |..++||+|-+.. .++.+.++ |+..|+.
T Consensus 135 ~~VLDlG~GsG~----iai~la~~~---p~~~V~avDis~~------al~~A~~n----~~~~~l~ 183 (307)
T PRK11805 135 TRILDLCTGSGC----IAIACAYAF---PDAEVDAVDISPD------ALAVAEIN----IERHGLE 183 (307)
T ss_pred CEEEEEechhhH----HHHHHHHHC---CCCEEEEEeCCHH------HHHHHHHH----HHHhCCC
Confidence 579999999996 333444432 4689999997642 24444443 4555663
No 109
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=21.01 E-value=1.2e+02 Score=28.64 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=61.4
Q ss_pred HHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCCCc
Q 008988 271 ANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVP 350 (547)
Q Consensus 271 ANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvp 350 (547)
+-..+++.+...+.=+|+|+|.|.|.-=. .|+.+ -|..++|++|.+.. .++.+.+ -++..++.
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~----~la~~---~~~~~v~~vDi~~~------a~~~a~~----n~~~n~~~ 81 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVISL----ALAKR---GPDAKVTAVDINPD------ALELAKR----NAERNGLE 81 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHHHH----HHHHT---STCEEEEEEESBHH------HHHHHHH----HHHHTTCT
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHHHH----HHHHh---CCCCEEEEEcCCHH------HHHHHHH----HHHhcCcc
Confidence 45577787776677789999999995322 33333 26788999987542 2333333 34556666
Q ss_pred eEEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHH-HHHHhcCCcEEE
Q 008988 351 FEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLL-RLVKSLSPKVVT 414 (547)
Q Consensus 351 FeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L-~~Vk~L~Pkvvt 414 (547)
- .+.+..+..+ .+.-..=+.|+.|-++ |.-.++. ....+.|+ ..-+-|+|.=..
T Consensus 82 ~-v~~~~~d~~~----~~~~~~fD~Iv~NPP~--~~~~~~~---~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 82 N-VEVVQSDLFE----ALPDGKFDLIVSNPPF--HAGGDDG---LDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp T-EEEEESSTTT----TCCTTCEEEEEE---S--BTTSHCH---HHHHHHHHHHHHHHEEEEEEE
T ss_pred c-cccccccccc----cccccceeEEEEccch--hcccccc---hhhHHHHHHHHHHhccCCCEE
Confidence 2 3333333211 1111223467888662 3222211 12234444 555778998544
No 110
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=20.89 E-value=7.9e+02 Score=25.99 Aligned_cols=112 Identities=19% Similarity=0.149 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhhccceeEEEEecccCccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCCCchHHHHHHHHHHHHHhCC
Q 008988 269 MSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCN 348 (547)
Q Consensus 269 ~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~RpggPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~g 348 (547)
+.+=..|++-+.=+.--||.|+|. .|-.|+.-.|.+-| +++|||+.+.+ .++...+ -++..|
T Consensus 58 ~~k~~~~~~kl~L~~G~~lLDiGC----GWG~l~~~aA~~y~----v~V~GvTlS~~------Q~~~~~~----r~~~~g 119 (283)
T COG2230 58 RAKLDLILEKLGLKPGMTLLDIGC----GWGGLAIYAAEEYG----VTVVGVTLSEE------QLAYAEK----RIAARG 119 (283)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCC----ChhHHHHHHHHHcC----CEEEEeeCCHH------HHHHHHH----HHHHcC
Confidence 334444555555566779999864 58889999998863 79999997653 2333333 345566
Q ss_pred CceEEEEecccccccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHH-hcCCcE
Q 008988 349 VPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVK-SLSPKV 412 (547)
Q Consensus 349 vpFeF~~V~~~~~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk-~L~Pkv 412 (547)
++=..+.+..+..++... + | .|-++=+++|+..+ | -+.|++.++ -|+|.-
T Consensus 120 l~~~v~v~l~d~rd~~e~-f----D---rIvSvgmfEhvg~~-----~-~~~ff~~~~~~L~~~G 170 (283)
T COG2230 120 LEDNVEVRLQDYRDFEEP-F----D---RIVSVGMFEHVGKE-----N-YDDFFKKVYALLKPGG 170 (283)
T ss_pred CCcccEEEeccccccccc-c----c---eeeehhhHHHhCcc-----c-HHHHHHHHHhhcCCCc
Confidence 662222333333333211 1 2 23344467888653 2 356777775 467763
No 111
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=20.81 E-value=5.1e+02 Score=24.24 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHHHHhCCCceEEEEecccc--cccccccccccCCceEEEeecccccCCCCCCccccchHHHHHHHHHhc
Q 008988 331 GGLDIVGKRLSEFAASCNVPFEFQDTAMTA--CEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSL 408 (547)
Q Consensus 331 ~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~--~ev~~~~L~i~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~Vk~L 408 (547)
+.+..+...|...|+.++-. ...+..-. .+...+.+....++++++.-. .|-+. ......+.+...+++.
T Consensus 11 g~l~~~s~el~~~A~~l~~~--v~~v~~G~~~~~~~~~~~~~Gad~v~~~~~~-~~~~~-----~~~~~a~al~~~i~~~ 82 (168)
T cd01715 11 GELRELTLEAVTAARKLGGE--VTALVIGSGAEAVAAALKAYGADKVLVAEDP-ALAHY-----LAEPYAPALVALAKKE 82 (168)
T ss_pred CChHHHHHHHHHHHHHhCCC--EEEEEECCChHHHHHHHHhcCCCEEEEecCh-hhccc-----ChHHHHHHHHHHHHhc
Confidence 45777777788889998733 33333221 111112233445677776532 11111 1233456788888999
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHHHH
Q 008988 409 SPKVVTLVEQESKTNTSPFFHRFLETLD 436 (547)
Q Consensus 409 ~PkvvtlvEqEan~ns~~F~~RF~EaL~ 436 (547)
+|++|.+... .++..+..|....|.
T Consensus 83 ~p~~Vl~~~t---~~g~~la~rlAa~L~ 107 (168)
T cd01715 83 KPSHILAGAT---SFGKDLAPRVAAKLD 107 (168)
T ss_pred CCCEEEECCC---ccccchHHHHHHHhC
Confidence 9999998643 345567777665554
No 112
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=20.67 E-value=42 Score=32.64 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCcEEEEEecCCCCC-------------------CCChhHHHHHHHHHHHHHhhhhhccCCCCcHHHHHHH
Q 008988 400 RLLRLVKSLSPKVVTLVEQESKTN-------------------TSPFFHRFLETLDYYTAMFESIDVTRPRDDKQRISAE 460 (547)
Q Consensus 400 ~~L~~Vk~L~PkvvtlvEqEan~n-------------------s~~F~~RF~EaL~yYsAlFDSLDa~lpr~~~eRi~vE 460 (547)
.+=+.++.++|++++++|-|...| +..=..|..---.++..+|..+|..+..+..+...+.
T Consensus 86 ~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~ 165 (186)
T PF04413_consen 86 AVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFR 165 (186)
T ss_dssp HHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHH
Confidence 456777888999999999986422 1111122222234788899999987777765544444
Q ss_pred H
Q 008988 461 Q 461 (547)
Q Consensus 461 ~ 461 (547)
+
T Consensus 166 ~ 166 (186)
T PF04413_consen 166 K 166 (186)
T ss_dssp T
T ss_pred H
Confidence 4
Done!