Query 008989
Match_columns 547
No_of_seqs 188 out of 1688
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:17:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w26_A Trigger factor, TF; cha 100.0 5.1E-73 1.7E-77 608.5 40.7 401 90-533 1-406 (432)
2 1t11_A Trigger factor, TF; hel 100.0 5.4E-74 1.8E-78 608.7 32.1 376 88-504 2-382 (392)
3 3gty_X Trigger factor, TF; cha 100.0 4.4E-68 1.5E-72 570.1 38.2 395 90-534 1-397 (433)
4 1p9y_A Trigger factor, TF; alp 100.0 3.5E-28 1.2E-32 216.7 14.3 119 88-214 2-120 (121)
5 2d3o_1 Trigger factor, TF; rib 99.9 1.3E-26 4.4E-31 203.9 7.3 112 90-210 1-112 (112)
6 2nsc_A Trigger factor, TF; cha 99.9 1.4E-25 4.8E-30 196.4 8.4 109 90-210 1-109 (109)
7 1hxv_A Trigger factor; FKBP fo 99.8 9.6E-19 3.3E-23 153.9 8.5 100 245-351 14-113 (113)
8 2nsa_A Trigger factor, TF; cha 99.7 2.8E-18 9.7E-23 161.1 10.4 137 369-518 2-138 (170)
9 1zxj_A MPN555, hypothetical pr 99.6 7.5E-16 2.6E-20 149.5 10.5 143 365-533 50-206 (218)
10 2pbc_A FK506-binding protein 2 99.4 8.5E-13 2.9E-17 113.2 9.4 90 258-353 3-99 (102)
11 1r9h_A FKB-6, FK506 binding pr 99.3 5.5E-12 1.9E-16 114.0 9.2 96 260-361 29-131 (135)
12 2vn1_A 70 kDa peptidylprolyl i 99.3 1.1E-11 3.9E-16 110.9 9.6 92 258-354 31-129 (129)
13 2k8i_A SLYD, peptidyl-prolyl C 99.3 1.2E-11 4.3E-16 116.1 9.6 95 261-365 3-150 (171)
14 1yat_A FK506 binding protein; 99.2 2.9E-11 9.9E-16 105.6 10.1 85 261-351 22-113 (113)
15 2y78_A Peptidyl-prolyl CIS-tra 99.2 4.6E-11 1.6E-15 107.7 9.7 87 258-350 40-133 (133)
16 2ppn_A FK506-binding protein 1 99.2 3.6E-11 1.2E-15 103.8 8.4 85 261-351 16-107 (107)
17 2lgo_A FKBP; infectious diseas 99.2 6.9E-11 2.4E-15 106.1 10.2 84 261-350 40-130 (130)
18 1jvw_A Macrophage infectivity 99.2 6.7E-11 2.3E-15 110.7 10.2 104 261-386 53-163 (167)
19 2kr7_A FKBP-type peptidyl-prol 99.2 1.1E-10 3.9E-15 107.4 10.7 90 258-353 4-147 (151)
20 3pr9_A FKBP-type peptidyl-prol 99.1 1.3E-10 4.6E-15 107.5 8.3 84 261-351 2-149 (157)
21 4dt4_A FKBP-type 16 kDa peptid 99.1 2.5E-10 8.5E-15 106.9 8.9 88 260-353 24-166 (169)
22 3kz7_A FK506-binding protein 3 99.1 4.4E-10 1.5E-14 98.9 9.9 85 260-350 19-118 (119)
23 3prb_A FKBP-type peptidyl-prol 99.1 8.4E-11 2.9E-15 115.3 5.6 95 261-362 2-160 (231)
24 4dip_A Peptidyl-prolyl CIS-tra 99.1 3.6E-10 1.2E-14 100.4 9.2 89 258-352 26-123 (125)
25 1u79_A FKBP-type peptidyl-prol 99.0 3.3E-10 1.1E-14 101.4 8.1 87 258-350 24-128 (129)
26 2d9f_A FK506-binding protein 8 99.0 2.8E-10 9.5E-15 102.8 7.5 91 260-358 33-129 (135)
27 2kfw_A FKBP-type peptidyl-prol 99.0 4.8E-10 1.6E-14 107.4 9.5 86 261-352 3-141 (196)
28 3b7x_A FK506-binding protein 6 99.0 3.5E-10 1.2E-14 102.0 7.3 88 259-351 39-133 (134)
29 3cgm_A SLYD, peptidyl-prolyl C 99.0 5.8E-10 2E-14 103.4 8.6 82 261-352 3-137 (158)
30 3o5q_A Peptidyl-prolyl CIS-tra 99.0 8.1E-10 2.8E-14 98.7 9.3 87 260-352 34-127 (128)
31 2awg_A 38 kDa FK-506 binding p 99.0 7.6E-10 2.6E-14 97.4 8.9 84 260-351 29-117 (118)
32 3o5e_A Peptidyl-prolyl CIS-tra 99.0 1.3E-09 4.5E-14 99.4 9.8 87 260-352 50-143 (144)
33 1ix5_A FKBP; ppiase, isomerase 99.0 4.5E-10 1.5E-14 103.4 6.1 66 261-332 2-82 (151)
34 2f4e_A ATFKBP42; FKBP-like, al 98.9 2E-09 6.8E-14 101.9 9.3 92 258-354 61-162 (180)
35 1q6h_A FKBP-type peptidyl-prol 98.9 3E-09 1E-13 104.0 9.4 86 258-351 133-224 (224)
36 2jwx_A FKBP38NTD, FK506-bindin 98.9 3.8E-09 1.3E-13 97.8 9.4 87 260-354 59-151 (157)
37 1fd9_A Protein (macrophage inf 98.9 3.5E-09 1.2E-13 102.8 9.0 87 258-352 118-211 (213)
38 3jxv_A 70 kDa peptidyl-prolyl 98.9 5.3E-09 1.8E-13 109.1 9.8 88 259-352 258-355 (356)
39 3uf8_A Ubiquitin-like protein 98.8 7.4E-09 2.5E-13 100.3 9.7 87 258-350 116-209 (209)
40 1q1c_A FK506-binding protein 4 98.8 5.7E-09 1.9E-13 105.5 8.4 85 260-354 183-276 (280)
41 3oe2_A Peptidyl-prolyl CIS-tra 98.8 1.5E-08 5.3E-13 98.5 9.8 85 259-352 130-219 (219)
42 2if4_A ATFKBP42; FKBP-like, al 98.8 8E-09 2.7E-13 106.2 8.1 91 259-353 62-161 (338)
43 1q1c_A FK506-binding protein 4 98.7 2.7E-08 9.1E-13 100.6 10.5 90 261-356 67-163 (280)
44 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 1.3E-08 4.6E-13 108.9 8.4 98 261-365 47-151 (457)
45 3jxv_A 70 kDa peptidyl-prolyl 98.5 6.8E-09 2.3E-13 108.3 -2.0 102 260-367 26-134 (356)
46 2lkn_A AH receptor-interacting 98.4 4.7E-07 1.6E-11 84.3 6.6 62 261-326 27-90 (165)
47 1p5q_A FKBP52, FK506-binding p 95.4 0.037 1.3E-06 56.0 8.5 84 260-352 40-131 (336)
48 3rgc_A Possible periplasmic pr 90.7 2.9 9.8E-05 40.4 13.0 110 372-498 13-128 (252)
49 3rgc_A Possible periplasmic pr 90.5 0.82 2.8E-05 44.3 8.9 80 462-543 30-124 (252)
50 1kt0_A FKBP51, 51 kDa FK506-bi 89.9 0.56 1.9E-05 49.4 7.6 84 260-352 161-252 (457)
51 1m5y_A SurviVal protein, survi 86.6 3.8 0.00013 42.2 11.3 83 459-543 46-142 (408)
52 3nrk_A LIC12922; NC domain, pa 85.3 4.4 0.00015 40.8 10.7 95 390-500 56-156 (325)
53 1m5y_A SurviVal protein, survi 83.9 8.4 0.00029 39.6 12.4 95 391-498 50-146 (408)
54 3nrk_A LIC12922; NC domain, pa 72.4 12 0.0004 37.6 9.0 37 459-495 53-89 (325)
55 2nsa_A Trigger factor, TF; cha 72.0 5 0.00017 36.3 5.5 64 469-532 30-104 (170)
56 2f23_A Anti-cleavage anti-GREA 70.1 22 0.00077 31.8 9.4 32 307-351 124-155 (156)
57 1te7_A Hypothetical UPF0267 pr 68.3 17 0.00057 30.3 7.6 40 340-382 48-87 (103)
58 2p4v_A Transcription elongatio 59.9 21 0.00073 32.1 7.1 33 307-352 123-155 (158)
59 1w26_A Trigger factor, TF; cha 59.1 49 0.0017 34.6 10.9 67 466-532 284-357 (432)
60 3bmb_A Regulator of nucleoside 49.5 20 0.00069 31.4 5.0 34 307-352 93-126 (136)
61 3rfw_A Cell-binding factor 2; 47.9 38 0.0013 32.3 7.2 79 302-412 171-251 (252)
62 1zxj_A MPN555, hypothetical pr 47.0 13 0.00043 35.6 3.5 65 465-533 87-152 (218)
63 3gty_X Trigger factor, TF; cha 46.8 56 0.0019 34.2 8.8 66 468-533 271-347 (433)
64 1grj_A GREA protein; transcrip 43.6 23 0.00079 31.9 4.5 32 307-351 125-156 (158)
65 3rfw_A Cell-binding factor 2; 43.5 1.6E+02 0.0055 27.7 11.0 35 462-498 71-105 (252)
66 2pn0_A Prokaryotic transcripti 38.4 26 0.00088 30.9 3.9 34 307-352 96-129 (141)
67 1t11_A Trigger factor, TF; hel 30.5 39 0.0013 34.9 4.4 83 451-533 265-361 (392)
68 3u43_A Colicin-E2 immunity pro 27.7 39 0.0013 27.9 3.0 25 113-137 63-87 (94)
69 1unk_A Colicin E7; immunity pr 25.7 51 0.0017 26.8 3.2 23 114-136 65-87 (87)
70 1use_A VAsp, vasodilator-stimu 25.4 1.2E+02 0.0041 21.5 4.7 29 372-405 8-36 (45)
71 1gxg_A Colicin E8 immunity pro 25.2 50 0.0017 26.7 3.1 24 113-136 62-85 (85)
72 1fr2_A Colicin E9 immunity pro 25.0 45 0.0015 27.1 2.8 24 113-136 63-86 (86)
73 1yx3_A Hypothetical protein DS 20.5 2.5E+02 0.0085 24.5 6.8 42 473-516 51-93 (132)
No 1
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=100.00 E-value=5.1e-73 Score=608.45 Aligned_cols=401 Identities=19% Similarity=0.315 Sum_probs=352.0
Q ss_pred cEEEEeecCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCcCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 008989 90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM 169 (547)
Q Consensus 90 m~vt~~~~~~~~~~l~V~Vp~~~v~~~~~k~l~~~~k~~~IPGFRkGKvP~~vv~k~~G~~~i~~e~~e~li~~~~~~al 169 (547)
|+++++++++++++|+|+||+++++++++++|++++++++||||||||||++||+++||. .|+.++++++++.+|.+|+
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~~~yG~-~v~~ea~~~~~~~~~~~ai 79 (432)
T 1w26_A 1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGA-SVRQDVLGDLMSRNFIDAI 79 (432)
T ss_dssp CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTTCGGGCCSSSCHHHHHHHHCT-TTHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999996 7999999999999999999
Q ss_pred HhhhcccCCcccccccccchhhcccCCCCceEEEEEEEeecccccCCCCCCceeEEEEe----cchhhHHHHHHHHHHHH
Q 008989 170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQQAAEEELRR 245 (547)
Q Consensus 170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~f~v~vev~Pev~l~~~~dYk~l~v~~~----~de~vd~~~~~e~~l~~ 245 (547)
++.+++|+++|. +. . ..+.+|++|+|+++|+|+|+|+|+ +|++++|+++ +|++|++ .|.+
T Consensus 80 ~e~~l~~~~~P~-i~--~----~~~~~~~~~~f~~~~~v~Pev~l~---~y~~l~v~~~~~eVtde~Vd~------~l~~ 143 (432)
T 1w26_A 80 IKEKINPAGAPT-YV--P----GEYKLGEDFTYSVEFEVYPEVELQ---GLEAIEVEKPIVEVTDADVDG------MLDT 143 (432)
T ss_dssp HHSCCCEEEEEE-EE--E----CCCCTTSCEEEEEEEEECCCCCCC---CTTTCBCCEEECCCCHHHHHH------HHHH
T ss_pred HhcCCCCCCCCC-cc--c----cccCCCCcEEEEEEeccCCCeecC---CCCceEEEecCCCcCHHHHHH------HHHH
Confidence 999999998752 21 1 246678999999999999999996 9999998876 3566665 4778
Q ss_pred HHHhcCccccccccCcccccEEEEEEEEeeeccCCCCCcccCCCCccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEE
Q 008989 246 RHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRL 325 (547)
Q Consensus 246 ~~~~~a~~~~v~dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~ 325 (547)
+++++++|.++ +++++.||+|+|||+++ .+|+.|+++..+++.|.+| ++.++|||+++|+||++|++++|.+
T Consensus 144 l~~~~a~~~~~-~~~~~~gD~V~i~y~g~------~dG~~fd~~~~~~~~~~lG-~g~~ipgfee~L~G~k~Ge~~~v~v 215 (432)
T 1w26_A 144 LRKQQATWKEK-DGAVEAEDRVTIDFTGS------VDGEEFEGGKASDFVLAMG-QGRMIPGFEDGIKGHKAGEEFTIDV 215 (432)
T ss_dssp HHHHTCEECCC-SSCCCTTCEEEECEEEE------SSSCBCSSCCCSSEEEETT-SCCSCTTHHHHSSSCCSSCEEEEEE
T ss_pred HHHhCCeeeec-CCCCCCCCEEEEEEEEe------eCCeEccCCCccceEEEeC-CCCcchHHHHHhCCCCCCCEEEEEE
Confidence 88889998874 89999999999999998 6899999998999999999 4789999999999999999999999
Q ss_pred eCCCCCCCcCCCCCeeEEEEEEeEeeecCCCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008989 326 AFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLY 405 (547)
Q Consensus 326 ~fPedy~~~~laGk~~~F~VtVk~Ik~~~lPELdDEfak~l~~~~~Tleelr~~Ik~~l~~~~~~~~~~~~~~~il~~L~ 405 (547)
+||++|+.++++|+++.|+|+|++|+++++|||||||||.++++++|+++||+.||++|+++.+.+.++.++++++++|+
T Consensus 216 ~~~~~yg~~~lag~~~~F~V~v~~v~~~~lpeldDEfak~~~~~~~tleelk~~ir~~l~~~~~~~~~~~~~~~v~~~l~ 295 (432)
T 1w26_A 216 TFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLV 295 (432)
T ss_dssp ECCTTCSCTTTSSCEEEEEEECCEECCEECCCCSHHHHTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhCCCCCCCceEEEEEEEEEEeccCCCCcchHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988546999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 008989 406 KMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFS 485 (547)
Q Consensus 406 e~~~~dlPeslve~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~ee~~e~~~~~A~k~vK~~Lil~~Iak~E~I~Vt 485 (547)
++++|++|++||+++++++++++..++ +++|++.. +...+.++++|+++||++|||++||+++||+||
T Consensus 296 e~~~~~lP~~lv~~e~~~~~~~~~~~l-~~~g~~~~-----------~~~~e~~~~~Ae~~vk~~Lil~~Ia~~e~i~vt 363 (432)
T 1w26_A 296 KANDIDVPAALIDSEIDVLRRQAAQRF-GGNEKQAL-----------ELPRELFEEQAKRRVVVGLLLGEVIRTNELKAD 363 (432)
T ss_dssp HHCCCCCCHHHHHHHHHHHHHHHHTTT-TCCTTSST-----------TSCGGGTHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHH-HhcCcchh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999988887 45563311 111334589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHH-HHhhhhHHHHHHHhhhh
Q 008989 486 TEDLVKEVENSIAELKQQKQEYDEDRVREQV-STFSYVGLIFCGIMQSQ 533 (547)
Q Consensus 486 eeEi~~ei~~~~~~~~~~g~~~~~~~l~e~~-~e~~~~~~~~~~lm~~~ 533 (547)
++||++++.++++ +|| +++.+.+++ .+...+..+...|+.+.
T Consensus 364 ~eev~~~i~~~a~---~y~---~~~~~~~~~~~~~~~~~~l~~~i~~~K 406 (432)
T 1w26_A 364 EERVKGLIEEMAS---AYE---DPKEVIEFYSKNKELMDNMRNVALEEQ 406 (432)
T ss_dssp HHHHHHHHHHHHT---TSS---CHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HcC---CHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 9999999999875 677 355444443 33334344444444433
No 2
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=100.00 E-value=5.4e-74 Score=608.68 Aligned_cols=376 Identities=20% Similarity=0.344 Sum_probs=340.3
Q ss_pred CccEEEEeecCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCcCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHH
Q 008989 88 ADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPH 167 (547)
Q Consensus 88 ~~m~vt~~~~~~~~~~l~V~Vp~~~v~~~~~k~l~~~~k~~~IPGFRkGKvP~~vv~k~~G~~~i~~e~~e~li~~~~~~ 167 (547)
..|+++++++++++++|+|+||+++++++++++|++++++++||||||||||++||+++||. .|+.++++++++.+|.+
T Consensus 2 ~~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~~i~k~yG~-~v~~ea~~~~~~~~~~~ 80 (392)
T 1t11_A 2 SHMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGK-AVRQDVLGEVMQRHFIE 80 (392)
T ss_dssp -CCEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999995 79999999999999999
Q ss_pred HHHhhhcccCCcccccccccchhhcccCCCCceEEEEEEEeecccccCCCCCCceeEEEEe----cchhhHHHHHHHHHH
Q 008989 168 AMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQQAAEEEL 243 (547)
Q Consensus 168 al~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~f~v~vev~Pev~l~~~~dYk~l~v~~~----~de~vd~~~~~e~~l 243 (547)
|+++.+++|+++|. +. . ..+.+|++|+|+++|+|+|+|+|+ +|++++|+++ +|++|++ .|
T Consensus 81 ai~e~~l~~~~~P~-i~--~----~~~~~~~~~~f~~~~ev~Pev~l~---~y~~l~v~~~~~~Vtde~Vd~------~l 144 (392)
T 1t11_A 81 AIVKEKINPAGAPT-FA--P----VEIGEGKDLVFTATFEVYPEVELK---GLENIAVEKPAAEVTDADVAE------ML 144 (392)
T ss_dssp HHHHTTCCBSSCCE-EE--E----EECCTTSCEEEEEEEEBCCCCCCT---TCTTCEEESSCC---CTHHHH------HH
T ss_pred HHHHcCCCcCCCCC-cc--c----cccCCCCCEEEEEEecCCCceecC---CCCceEEEeCCCCcCHHHHHH------HH
Confidence 99999999998752 21 1 246788999999999999999996 9999999875 3677776 47
Q ss_pred HHHHHhcCccccccccCcccccEEEEEEEEeeeccCCCCCcccCCCCccCEEEEecCCCCCcccHHHhhcCCCCCceEEE
Q 008989 244 RRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSF 323 (547)
Q Consensus 244 ~~~~~~~a~~~~v~dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~ 323 (547)
.++++++++|.++ +++++.||+|+|||+++ .+|+.|+++..+++.|.+| ++.++|||+++|+||++||+++|
T Consensus 145 ~~l~~~~a~~~~~-~~~~~~gD~V~i~y~g~------~dG~~fd~~~~~~~~~~lG-~g~~ipgfee~L~Gmk~Ge~~~v 216 (392)
T 1t11_A 145 ETLRKQQATWKEV-DEAAENGKRVSIDFVGS------IDGVEFEGGKAENFPLEMG-AGRMIPGFEDGIVGKTKGMEFVI 216 (392)
T ss_dssp HHHHHHHCEEEEC-SCCCCTTCEEEEEEEEE------SSSSCCTTCEEEEEEEETT-SCCBSTTSGGGTTTCCSSCCCCE
T ss_pred HHHHHhcCeeeec-CCCCCCCCEEEEEEEEE------ECCEEccCCCccceEEEec-CCCcchhHHHHhCCCCCCCEEEE
Confidence 7778888998875 89999999999999998 6899999998899999999 47899999999999999999999
Q ss_pred EEeCCCCCCCcCCCCCeeEEEEEEeEeeecCCCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008989 324 RLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQ 403 (547)
Q Consensus 324 ~~~fPedy~~~~laGk~~~F~VtVk~Ik~~~lPELdDEfak~l~~~~~Tleelr~~Ik~~l~~~~~~~~~~~~~~~il~~ 403 (547)
+++||++|+.++++|+++.|+|+|++|+++++|||||||||.++++++|+++||+.||++|+++.+.++++.++++++++
T Consensus 217 ~v~fp~dy~~~~laGk~~~F~V~v~~i~~~~lpeldDEfak~~~~~~~tleelk~~ir~~l~~~~~~~~~~~~~~~v~~~ 296 (392)
T 1t11_A 217 DVTFPEDYHAENLKGKAAKFAIKVNKVEARELPELNDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEG 296 (392)
T ss_dssp EEECCTTCSCTTTSSCEEEECCCEEEEEEEECCCCSTGGGGGGSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred EEeCccccccCCCCCCeEEEEEEEEEEEcCCCCCcCHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999885469999999999999999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 008989 404 LYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEF-LENQRENITNVIKQNLAVGDIFKRENL 482 (547)
Q Consensus 404 L~e~~~~dlPeslve~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~ee~-~e~~~~~A~k~vK~~Lil~~Iak~E~I 482 (547)
|+++++|++|++||+++++++++++..+++ ++ ++ +. .++ .+.++++|+++||++|||++||+++||
T Consensus 297 l~e~~~~~lP~~lv~~e~~~~~~~~~~~l~-~~-~~-~~----------~~~~~e~~~~~Ae~~vk~~Lil~~ia~~e~i 363 (392)
T 1t11_A 297 LVKENEIQVPSALIDQEINVLRQQAAQRFG-GN-VE-AA----------AQLPRELFEEQAKRRVVVGLLLGEVIRTHEL 363 (392)
T ss_dssp BCSCCCEEECHHHHHHHHHHHHHHHHHHSS-CS-HH-HH----------TTSCGGGTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-hh-hc-ch----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999888773 32 11 11 122 344689999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcc
Q 008989 483 QFSTEDLVKEVENSIAELKQQK 504 (547)
Q Consensus 483 ~VteeEi~~ei~~~~~~~~~~g 504 (547)
+||++||++++.++++ +||
T Consensus 364 ~vt~eev~~~i~~~a~---~y~ 382 (392)
T 1t11_A 364 KADEEKVKALITEMAT---AYE 382 (392)
T ss_dssp CCCHHHHHHHHHHHHH---CC-
T ss_pred CCCHHHHHHHHHHHHH---HcC
Confidence 9999999999999886 677
No 3
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=100.00 E-value=4.4e-68 Score=570.06 Aligned_cols=395 Identities=19% Similarity=0.292 Sum_probs=333.7
Q ss_pred cEEEEeecCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCcCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 008989 90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM 169 (547)
Q Consensus 90 m~vt~~~~~~~~~~l~V~Vp~~~v~~~~~k~l~~~~k~~~IPGFRkGKvP~~vv~k~~G~~~i~~e~~e~li~~~~~~al 169 (547)
|+|++++.+++.+.|+|+||+++++++++++|++++++++||||||||||++||+++||+ .++.++++.+++.++..+.
T Consensus 1 M~v~~~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v~ipGFRkGKvP~~vi~k~yG~-~v~~ev~~~l~~~~~~~~~ 79 (433)
T 3gty_X 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKMKLGE-EFQEYTLDFLMDLIPDTLK 79 (433)
T ss_dssp CEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCCCCC--CCCCCSHHHHTTSTT-HHHHHHHHHHHTTSTTTSS
T ss_pred CceEEEEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHhhH-HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999998 6888999999999875444
Q ss_pred HhhhcccCCcccccccccchhhcccCCCCceEEEEEEEeecccccCCCCCCceeEEEEec-chhhHHHHHHHHHHHHHHH
Q 008989 170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEI-DNDTAAQQAAEEELRRRHK 248 (547)
Q Consensus 170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~f~v~vev~Pev~l~~~~dYk~l~v~~~~-de~vd~~~~~e~~l~~~~~ 248 (547)
++ .++++| .+. . ..+ .+++|+|+++|+|+|+|+|+ +|++++|+++. .+..++ .++..|..+++
T Consensus 80 ~e---~~~~~P-~i~--~----~~~-~~~~~~f~~~vev~Pev~l~---~y~~l~v~~~~~~eVtde--~Vd~~l~~l~~ 143 (433)
T 3gty_X 80 DR---KLILSP-IVT--E----REL-KDVTARVVVEVHEEPEVRIG---DISKIEVEKVDEEKVLEK--YVERRIEDLRE 143 (433)
T ss_dssp SS---CBSSCC-EEE--E----EEE-CSSCEEEEEEEEBCCEEECC---CGGGSEEEEECHHHHHHH--HHHHHHHHHHH
T ss_pred hc---CCCCCC-CcC--c----ccc-cCCCEEEEEEEEecCCcccC---CcCcceeeecCCCCCCHH--HHHHHHHHHHH
Confidence 33 456554 221 1 123 36799999999999999996 89999998763 121121 23346888899
Q ss_pred hcCccccccccCcccccEEEEEEEEeeeccCCCCCcccCCCCccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCC
Q 008989 249 SLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFP 328 (547)
Q Consensus 249 ~~a~~~~v~dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fP 328 (547)
++++|.++ +|+++.||+|+|||+++ .+|++|+++.+.++.+.+|+ +. | |+++|+||++||+++|+++|
T Consensus 144 ~~a~~~~v-e~~a~~gD~V~id~~~~------~dG~~~~~~~~~~~~l~~g~-~~--~-fe~~liG~k~Ge~~~~~vtF- 211 (433)
T 3gty_X 144 SHALLEPK-EGPAEAGDLVRVNMEVY------NEEGKKLTSREYEYVISEDE-DR--P-FVKDLVGKKKGDVVEIEREY- 211 (433)
T ss_dssp HTCCEEEC-CSCCCTTSEEEEEEEEE------CTTSCEEEEEEEEEECCSSC-CC--T-THHHHTTCCTTCEEEEEEEE-
T ss_pred hcCeeecc-ccccCCCCEEEEEEEEE------ECCEECcCCCCCCeEEEecC-Cc--h-HHHHhCCCCCCceEEEEEee-
Confidence 99999886 78999999999999998 68999999888999999885 44 5 99999999999999999998
Q ss_pred CCCCCcCCCCCeeEEEEEEeEeeecCCCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008989 329 ESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMV 408 (547)
Q Consensus 329 edy~~~~laGk~~~F~VtVk~Ik~~~lPELdDEfak~l~~~~~Tleelr~~Ik~~l~~~~~~~~~~~~~~~il~~L~e~~ 408 (547)
+||+++|+|||++|+++++||||||||++++++++|+++||+.||++|+++++.++++.++++|+++|++.+
T Consensus 212 --------aGk~a~F~VtV~~Ik~~~lPEldDEfak~~~~~~~tleelk~~ir~~l~~~~~~~~~~~~~~~v~~~l~e~~ 283 (433)
T 3gty_X 212 --------EGKKYTYKLEVEEVYKRTLPEIGDELAKSVNNEFETLEQLKESLKKEGKEIYDVEMKESMREQLLEKLPEIV 283 (433)
T ss_dssp --------TTEEEEEEEEEEEEEEECCCCSSHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred --------CCCeEEEEEEEEEEEEecCCcccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 699999999999999999999999999998656999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 008989 409 EIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTED 488 (547)
Q Consensus 409 ~~dlPeslve~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~ee~~e~~~~~A~k~vK~~Lil~~Iak~E~I~VteeE 488 (547)
+|+||++||++++++++++ ++ +++ +.++|++..+ +.++|++++++.|+++||++|||++||+++||+||++|
T Consensus 284 ~~~lP~~lv~~e~~~~~~~----l~-~q~-~~~~~l~~~~--~~e~~~e~~~~~Ae~~vk~~Lil~~Ia~~e~I~vt~ee 355 (433)
T 3gty_X 284 EIEISDRTLEILVNEAINR----LK-REG-RYEQIVSSYE--SEEKFREELKERILDDIKRDRVIEVLAQEKGISVNDEE 355 (433)
T ss_dssp EEECCHHHHHHHHHHHHHH----HH-TTT-HHHHHHTTSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHH----HH-Hhh-hHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 9999999999999987754 32 233 4566665433 23889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHhh-hhHHHHHHHhhhhc
Q 008989 489 LVKEVENSIAELKQQKQEYDEDRVREQVSTFS-YVGLIFCGIMQSQN 534 (547)
Q Consensus 489 i~~ei~~~~~~~~~~g~~~~~~~l~e~~~e~~-~~~~~~~~lm~~~~ 534 (547)
|++++..+++ +||+ +++.++++++++. .++.+...|+.+..
T Consensus 356 v~~~i~~~A~---~yg~--~~~~~~~~~~~~~~~~~~l~~~i~~~Kv 397 (433)
T 3gty_X 356 LEKEAEELAP---FWGI--SPDRAKSLVKARQDLREELRWAILKRKV 397 (433)
T ss_dssp HHHHHTTSTT---TTTS--CHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HcCC--CHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 9999988875 6787 6788887776543 33445555554443
No 4
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=99.95 E-value=3.5e-28 Score=216.74 Aligned_cols=119 Identities=19% Similarity=0.346 Sum_probs=108.8
Q ss_pred CccEEEEeecCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCcCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHH
Q 008989 88 ADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPH 167 (547)
Q Consensus 88 ~~m~vt~~~~~~~~~~l~V~Vp~~~v~~~~~k~l~~~~k~~~IPGFRkGKvP~~vv~k~~G~~~i~~e~~e~li~~~~~~ 167 (547)
..|++++++.++++++|+|+||++++++++++++++++++++||||||||||++||+++||. .|++++++++++.+|.+
T Consensus 2 ~~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v~ipGFRkGKvP~~vi~k~yG~-~v~~ea~~~~i~~~~~~ 80 (121)
T 1p9y_A 2 SHMQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYGA-SVRQDVLGDLMSRNFID 80 (121)
T ss_dssp --CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCCCTTSCTTCSCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCccCCcCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999999999999999999999999999997 69999999999999999
Q ss_pred HHHhhhcccCCcccccccccchhhcccCCCCceEEEEEEEeeccccc
Q 008989 168 AMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKW 214 (547)
Q Consensus 168 al~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~f~v~vev~Pev~l 214 (547)
|+++.+++++++| .+ +. ..+.+|++|+|+++|+|+|+|+|
T Consensus 81 ai~e~~l~~~~~P-~i----~~--~~~~~~~~~~f~~~~ev~Pev~l 120 (121)
T 1p9y_A 81 AIIKEKINPAGAP-TY----VP--GEYKLGEDFTYSVEFEVYPEVEL 120 (121)
T ss_dssp HHHHTTCCCEEEE-EE----EE--CCCCSSSCEEEEEEEECCCCCCC
T ss_pred HHHHcCCCCCCCC-cc----cc--cccCCCCCEEEEEEEEEcCcccc
Confidence 9999999998764 22 11 34677899999999999999998
No 5
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=99.93 E-value=1.3e-26 Score=203.89 Aligned_cols=112 Identities=24% Similarity=0.415 Sum_probs=92.3
Q ss_pred cEEEEeecCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCcCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 008989 90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM 169 (547)
Q Consensus 90 m~vt~~~~~~~~~~l~V~Vp~~~v~~~~~k~l~~~~k~~~IPGFRkGKvP~~vv~k~~G~~~i~~e~~e~li~~~~~~al 169 (547)
|++++++ ++++++|+|+||++++++++++++++++++++||||||||||++||+++||++.|++++++++++.+|.+|+
T Consensus 1 M~v~~e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~k~yG~~~v~~ea~~~~i~~~~~~ai 79 (112)
T 2d3o_1 1 MAELISK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDVRVPGFRPGKAPRKVIENRVGKGYVESQVRDRLLETHYSQGL 79 (112)
T ss_dssp ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSCBTTBCTTCCCSTTHHHHTTTTSSHHHHHHHHHHHHHHHHH
T ss_pred CceEEEc-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhCCCCCcCCCCCCHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999 999999999999999999999999999999999999999999999999999657999999999999999999
Q ss_pred HhhhcccCCcccccccccchhhcccCCCCceEEEEEEEeec
Q 008989 170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAP 210 (547)
Q Consensus 170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~f~v~vev~P 210 (547)
++.+++++++|. ++. . +.+|++|+|+++|+|+|
T Consensus 80 ~e~~l~~~~~P~-----i~~--~-~~~~~~~~f~~~~ev~P 112 (112)
T 2d3o_1 80 RELGLNLVDATV-----DPQ--D-VQSGQAFEFTVKGETYP 112 (112)
T ss_dssp HHSCCCCCCEEC-----CCC--C-CCSSSCCCEEEEEC---
T ss_pred HHcCCCCCCCCc-----ccc--c-ccCCCCEEEEEEEEecC
Confidence 999999988642 221 3 66789999999999998
No 6
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=99.92 E-value=1.4e-25 Score=196.36 Aligned_cols=109 Identities=23% Similarity=0.348 Sum_probs=99.8
Q ss_pred cEEEEeecCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCcCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 008989 90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM 169 (547)
Q Consensus 90 m~vt~~~~~~~~~~l~V~Vp~~~v~~~~~k~l~~~~k~~~IPGFRkGKvP~~vv~k~~G~~~i~~e~~e~li~~~~~~al 169 (547)
|++++++.++++++|+|+||++++++++++++++++++++||||||||||+++|+++||. .|++++++++++. |.+|+
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~k~yG~-~v~~ea~~~~i~~-~~~ai 78 (109)
T 2nsc_A 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKMKLGE-EFQEYTLDFLMDL-IPDTL 78 (109)
T ss_dssp CEEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTCCCTTSCTTCCCHHHHHHHHGG-GHHHHHHHHHHTT-HHHHT
T ss_pred CceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccCCCCCcCCCCCCHHHHHHHHhH-HHHHHHHHHHHHH-HHHHH
Confidence 899999999999999999999999999999999999999999999999999999999996 6999999999999 99999
Q ss_pred HhhhcccCCcccccccccchhhcccCCCCceEEEEEEEeec
Q 008989 170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAP 210 (547)
Q Consensus 170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~f~v~vev~P 210 (547)
++.++ +++| .+ +. ..+. |++|+|+++|+|+|
T Consensus 79 ~e~~l--~~~P-~i----~~--~~~~-~~~~~f~~~~ev~P 109 (109)
T 2nsc_A 79 KDRKL--ILSP-IV----TE--RELK-DVTARVVVEVHEEP 109 (109)
T ss_dssp TTSCC--SSCC-CC----CC--CCCC-CCCCCCCCCCCCCC
T ss_pred HHcCc--CCCC-cc----cc--cccc-CCCEEEEEEEEecC
Confidence 99888 6654 22 21 3467 89999999999998
No 7
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=99.76 E-value=9.6e-19 Score=153.89 Aligned_cols=100 Identities=20% Similarity=0.429 Sum_probs=80.4
Q ss_pred HHHHhcCccccccccCcccccEEEEEEEEeeeccCCCCCcccCCCCccCEEEEecCCCCCcccHHHhhcCCCCCceEEEE
Q 008989 245 RRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFR 324 (547)
Q Consensus 245 ~~~~~~a~~~~v~dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~ 324 (547)
++++++++|.++++++++.||.|+|+|+++ .+|+.|+++..+++.|.+|. ++++|||+++|+||++|++++|.
T Consensus 14 ~l~~~~a~~~~v~~~~~~~gD~V~v~Y~g~------~dG~~fdss~~~p~~f~lG~-g~vi~G~ee~L~Gmk~Ge~~~v~ 86 (113)
T 1hxv_A 14 KLAKTKSTMVDVSDKKLANGDIAIIDFTGI------VDNKKLASASAQNYELTIGS-NSFIKGFETGLIAMKVNQKKTLA 86 (113)
T ss_dssp ---------------CCCSSEEEEEEEEEE------ETTEECSTTCCSEEEEEETS-SCSCTTHHHHHHTSCSSEEEEEC
T ss_pred HHHHhCCeEEecCCCCCCCCCEEEEEEEEE------ECCEEcccCCccCEEEEECC-CChhHHHHHHHCCCCCCCEEEEE
Confidence 345567788887678999999999999998 47899999888899999994 78999999999999999999999
Q ss_pred EeCCCCCCCcCCCCCeeEEEEEEeEee
Q 008989 325 LAFPESWRQEHLRGVQAQFTVECRELF 351 (547)
Q Consensus 325 ~~fPedy~~~~laGk~~~F~VtVk~Ik 351 (547)
++||++|....++|+++.|+|+|++|+
T Consensus 87 i~fP~~Yg~~~~~g~~l~F~V~l~~Vk 113 (113)
T 1hxv_A 87 LTFPSDYHVKELQSKPVTFEVVLKAIK 113 (113)
T ss_dssp CCCCTTSSSSGGGSCCCEEEEEECCBC
T ss_pred EeCchhhCcCCCCCCEEEEEEEEEEEC
Confidence 999999999999999999999999885
No 8
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=99.75 E-value=2.8e-18 Score=161.10 Aligned_cols=137 Identities=21% Similarity=0.302 Sum_probs=121.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCC
Q 008989 369 GCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSS 448 (547)
Q Consensus 369 ~~~Tleelr~~Ik~~l~~~~~~~~~~~~~~~il~~L~e~~~~dlPeslve~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~ 448 (547)
+++|+++||+.||++|+.+.+...++.++++++++|++.++|+ +|+.+++++++++..++ +++|++.++|..+
T Consensus 2 e~~tleelk~~ir~~l~~~~~~~~~~~~~~~vld~l~e~~~~~----lve~e~~~~~~~~~~~l-~~~g~~~~~~~~~-- 74 (170)
T 2nsa_A 2 EFETLEQLKESLKKEGKEIYDVEMKESMREQLLEKLPEIVEIE----ISDRTLEILVNEAINRL-KREGRYEQIVSSY-- 74 (170)
T ss_dssp CCCSHHHHHHHTCCBGGGGCCTTHHHHHHHHHHHHGGGGCCCC----CCHHHHHHHHHHHHHHH-HHHTCHHHHHHTS--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch----HHHHHHHHHHHHHHHHH-HHcCCCHHHHhcc--
Confidence 6899999999999999999999999999999999999999987 88888888998888888 4678888888754
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 008989 449 PKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDRVREQVST 518 (547)
Q Consensus 449 ~~~~ee~~e~~~~~A~k~vK~~Lil~~Iak~E~I~VteeEi~~ei~~~~~~~~~~g~~~~~~~l~e~~~e 518 (547)
+ +.++|.+.+++.|+++||++||+++||+++||+||++||++++.+++. +||. +++.+++++..
T Consensus 75 ~-~~e~~~e~~~~~A~~~vk~~lil~~ia~~e~I~vsdeev~~~i~~~A~---~y~~--~~~~~~~~~~~ 138 (170)
T 2nsa_A 75 E-SEEKFREELKERILDDIKRDRVIEVLAQEKGISVNDEELEKEAEELAP---FWGI--SPDRAKSLVKA 138 (170)
T ss_dssp S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH---HHTS--CHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---HcCC--CHHHHHHHHhc
Confidence 2 457888899999999999999999999999999999999999999886 6776 68888877743
No 9
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae}
Probab=99.63 E-value=7.5e-16 Score=149.48 Aligned_cols=143 Identities=13% Similarity=0.178 Sum_probs=112.3
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHh
Q 008989 365 KLLPGCTTIEQVKETLLQKCREVEQTAK---------DQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQ-MQA 434 (547)
Q Consensus 365 ~l~~~~~Tleelr~~Ik~~l~~~~~~~~---------~~~~~~~il~~L~e~~~~dlPeslve~e~~~~~~~~~~~-l~~ 434 (547)
++++.++|+++||+.||++|+++.+.+. +..++++|+++|++.++|+||++ +++++++++..+ ++
T Consensus 50 ~~~~~~etleeLKe~Irk~le~e~e~~~~~~~~~~~~~~~~k~~vld~Lve~~e~evPea----Ev~~l~~q~~q~~l~- 124 (218)
T 1zxj_A 50 RIFADPAFIEQHRQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEA----ELKNVMEGLKRDVIQ- 124 (218)
T ss_dssp CSCCCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEEECCHH----HHHHHHHHHHHC----
T ss_pred EeeCCcccHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHHHHh-
Confidence 3566789999999999999999866555 88999999999999999999999 888888887766 52
Q ss_pred cCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC----HH
Q 008989 435 GMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYD----ED 510 (547)
Q Consensus 435 ~~~~~~e~~~~~~~~~~~ee~~e~~~~~A~k~vK~~Lil~~Iak~E~I~VteeEi~~ei~~~~~~~~~~g~~~~----~~ 510 (547)
++ + . +.+++.|+++||++|+|++||+++||+||++||++++.++++ +||.+.+ ..
T Consensus 125 ~q--~---------~-------e~~re~AErRVKlgLvL~eIak~e~IeVtdEEV~~~I~e~A~---~Y~~~~e~~~~n~ 183 (218)
T 1zxj_A 125 GA--E---------D-------NTVQAIAEKIIKKALVFNHLQKEWKVEITDEVVKNVISLYYE---KTNQSVREYLDDK 183 (218)
T ss_dssp ----C---------C-------HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH---HSCSCCHHHHSCH
T ss_pred cc--C---------H-------HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---HcCCCHHHHHhCH
Confidence 11 1 1 346899999999999999999999999999999999999886 6775322 12
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhh
Q 008989 511 RVREQVSTFSYVGLIFCGIMQSQ 533 (547)
Q Consensus 511 ~l~e~~~e~~~~~~~~~~lm~~~ 533 (547)
.....++..++...+++-|+..+
T Consensus 184 ~~l~~lr~~IleeKvvd~Ile~A 206 (218)
T 1zxj_A 184 QKFEGVRTALLEERMVLETINHF 206 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 23444566666666666666654
No 10
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.39 E-value=8.5e-13 Score=113.21 Aligned_cols=90 Identities=16% Similarity=0.255 Sum_probs=79.4
Q ss_pred ccCcccccEEEEEEEEeeeccCCCCCcccCCCC--ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcC
Q 008989 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH 335 (547)
Q Consensus 258 dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~ 335 (547)
+++++.||.|+|+|+++. .+|+.|+++. .+++.|.+|. +.++|||+++|.||++|++++|.++.+..|....
T Consensus 3 g~~~~~gd~V~v~y~~~~-----~dG~~~d~s~~~~~p~~f~lG~-~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~ 76 (102)
T 2pbc_A 3 PIKSRKGDVLHMHYTGKL-----EDGTEFDSSLPQNQPFVFSLGT-GQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERG 76 (102)
T ss_dssp CCCCCTTCEEEEEEEEEC-----TTSCEEEESTTTTCCEEEETTS-SSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTC
T ss_pred CCcCCCCCEEEEEEEEEE-----CCCCEEEeCCCCCCCEEEEeCC-CCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCC
Confidence 467899999999999982 4789998765 4789999994 6899999999999999999999998888898877
Q ss_pred C-----CCCeeEEEEEEeEeeec
Q 008989 336 L-----RGVQAQFTVECRELFYR 353 (547)
Q Consensus 336 l-----aGk~~~F~VtVk~Ik~~ 353 (547)
+ +|+++.|+|+|++|+++
T Consensus 77 ~~~~Ip~~~~l~f~v~l~~v~~~ 99 (102)
T 2pbc_A 77 APPKIPGGATLVFEVELLKIERR 99 (102)
T ss_dssp BTTTBCTTCCEEEEEEEEEEGGG
T ss_pred CCCCcCcCCeEEEEEEEEEeccc
Confidence 7 89999999999999864
No 11
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=99.30 E-value=5.5e-12 Score=113.97 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=78.4
Q ss_pred CcccccEEEEEEEEeeeccCCCCCcccCCCC--ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCC-
Q 008989 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL- 336 (547)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~l- 336 (547)
.++.||.|+|+|+++. .+|+.|+++. .+++.|.+|. +.++|||+++|.||++|++++|.++.+..|....+
T Consensus 29 ~~~~gd~V~v~Y~g~~-----~dG~~fdss~~~~~p~~f~lG~-~~vi~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~~ 102 (135)
T 1r9h_A 29 KPTTGTTVKVHYVGTL-----ENGTKFDSSRDRGDQFSFNLGR-GNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSP 102 (135)
T ss_dssp CCCTTCEEEEEEEEEE-----TTSCEEEEHHHHTSCEEEETTT-TSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBT
T ss_pred CCCCCCEEEEEEEEEE-----CCCCEEEecCcCCCCEEEEeCC-CCccHHHHHHHhcCCCCCEEEEEEChHHcCCCCCCC
Confidence 5789999999999983 4788888764 4789999994 68999999999999999999999998889998877
Q ss_pred ----CCCeeEEEEEEeEeeecCCCCCCHH
Q 008989 337 ----RGVQAQFTVECRELFYRDLPKLDDS 361 (547)
Q Consensus 337 ----aGk~~~F~VtVk~Ik~~~lPELdDE 361 (547)
+|+++.|+|++++|+++.+|+-+|-
T Consensus 103 ~~Ip~~~~l~f~v~l~~i~~~~l~~~~d~ 131 (135)
T 1r9h_A 103 PKIPGGATLIFEVELFEWSAEDISPDRDG 131 (135)
T ss_dssp TTBCTTCCEEEEEEEEEEEC---------
T ss_pred CCcCcCCcEEEEEEEEEeecCCcCcCCCC
Confidence 8999999999999999999987773
No 12
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=99.27 E-value=1.1e-11 Score=110.86 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=79.9
Q ss_pred ccCcccccEEEEEEEEeeeccCCCCCcccCCCC--ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcC
Q 008989 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH 335 (547)
Q Consensus 258 dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~ 335 (547)
.++++.||.|+|+|+++. + .+|+.|+++. .+++.|.+|. +.++|||+++|.||++|++++|.++.+..|....
T Consensus 31 g~~~~~gd~V~v~Y~g~~-~---~dG~~fd~s~~~~~p~~f~lG~-g~~i~g~e~~l~gm~~Ge~~~v~ip~~~aYG~~~ 105 (129)
T 2vn1_A 31 ENIPKKGNEVTVHYVGKL-E---STGKVFDSSFDRNVPFKFHLEQ-GEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEG 105 (129)
T ss_dssp GGSCCTTCEEEEEEEEEE-T---TTCCEEEEGGGTTCCEEEETTS-SSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTC
T ss_pred CCcCCCCCEEEEEEEEEE-C---CCCeEEEecCCCCccEEEEeCC-CCcCHHHHHHHhCCCCCCEEEEEEChHHcCCCCC
Confidence 356889999999999982 1 3788888765 4789999994 6899999999999999999999999888998877
Q ss_pred C-----CCCeeEEEEEEeEeeecC
Q 008989 336 L-----RGVQAQFTVECRELFYRD 354 (547)
Q Consensus 336 l-----aGk~~~F~VtVk~Ik~~~ 354 (547)
+ +|+++.|+|+|++|++++
T Consensus 106 ~~~~Ip~~~~l~f~vel~~v~~~~ 129 (129)
T 2vn1_A 106 CGESIPGNSVLLFEIELLSFRELE 129 (129)
T ss_dssp BTTTBCTTCCEEEEEEEEEEECCC
T ss_pred CCCCcCCCCeEEEEEEEEEEecCC
Confidence 6 899999999999998753
No 13
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=99.26 E-value=1.2e-11 Score=116.10 Aligned_cols=95 Identities=13% Similarity=0.211 Sum_probs=79.9
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCCc-cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCc-----
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAET-KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQE----- 334 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~-~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~----- 334 (547)
++.||+|+|+|+++. .+|+.|+++.. +++.|.+|. ++++|+|+++|+||++|++++|.++.++.|...
T Consensus 3 i~~gd~V~v~Y~g~~-----~dG~~fdss~~~~P~~f~lG~-g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~v 76 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRT-----EDGVLVDESPVSAPLDYLHGH-GSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLV 76 (171)
T ss_dssp CCTTEEEEEEEEEEE-----TTSCEEEECCSSSCEEEETTS-CSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCTTSE
T ss_pred CCCCCEEEEEEEEEE-----CCCCEEeeccCCcCEEEEECC-CCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCChhhE
Confidence 678999999999982 37899988765 799999994 789999999999999999999999976667532
Q ss_pred -----------------------------------------------CCCCCeeEEEEEEeEeeecCCCCCCHHHHhh
Q 008989 335 -----------------------------------------------HLRGVQAQFTVECRELFYRDLPKLDDSLAGK 365 (547)
Q Consensus 335 -----------------------------------------------~laGk~~~F~VtVk~Ik~~~lPELdDEfak~ 365 (547)
.||||++.|+|+|.+|+... .+|++..
T Consensus 77 ~~v~~~~f~~~~~~~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~~at----~eei~~g 150 (171)
T 2k8i_A 77 QRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREAT----EEELAHG 150 (171)
T ss_dssp EEEEGGGGTTSSCCCTTCEEEEEETTEEEEEEEEEECSSEEEEESCCSSCCCEEEEEEEEEEEEECC----SHHHHHT
T ss_pred EEeeHHHCCcccCccCCcEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEEeccCC----HHHHhcC
Confidence 69999999999999998644 4555543
No 14
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=99.24 E-value=2.9e-11 Score=105.57 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=76.1
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCCc--cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCC--
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAET--KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL-- 336 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~--~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~l-- 336 (547)
++.||.|+++|+++. .+|+.|+++.. +++.|.+|. +.++|||+++|.||++|++++|.++++..|....+
T Consensus 22 ~~~gd~V~v~y~~~~-----~dG~~~d~s~~~~~p~~f~lG~-~~~i~g~e~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~ 95 (113)
T 1yat_A 22 PKTGDLVTIHYTGTL-----ENGQKFDSSVDRGSPFQCNIGV-GQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPG 95 (113)
T ss_dssp CCTTCEEEEEEEEEE-----TTSCEEEESTTTTCCEEEETTS-SSSCHHHHHHGGGCCTTCEEEEEECGGGTTTTTCBTT
T ss_pred CCCCCEEEEEEEEEE-----CCCCEEEecCCCCCcEEEEeCC-CCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCC
Confidence 789999999999983 47888887653 789999994 68999999999999999999999999999988776
Q ss_pred ---CCCeeEEEEEEeEee
Q 008989 337 ---RGVQAQFTVECRELF 351 (547)
Q Consensus 337 ---aGk~~~F~VtVk~Ik 351 (547)
+|+++.|+|+|++|+
T Consensus 96 ~Ip~~~~l~f~vel~~ik 113 (113)
T 1yat_A 96 LIPPNSTLVFDVELLKVN 113 (113)
T ss_dssp TBCTTCCEEEEEEEEEEC
T ss_pred CcCCCCeEEEEEEEEEeC
Confidence 889999999999985
No 15
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=99.20 E-value=4.6e-11 Score=107.67 Aligned_cols=87 Identities=15% Similarity=0.270 Sum_probs=77.3
Q ss_pred ccCcccccEEEEEEEEeeeccCCCCCcccCCCC--ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcC
Q 008989 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH 335 (547)
Q Consensus 258 dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~ 335 (547)
+++++.||.|+|+|+++. .+|+.|+++. .+++.|.+|. +.++|||+++|.||++|++++|.++++..|....
T Consensus 40 G~~~~~gd~V~v~Y~g~~-----~dG~~fdss~~~~~p~~f~lG~-g~vi~G~eeaL~gmk~Ge~~~v~ip~~~aYG~~~ 113 (133)
T 2y78_A 40 GAEARAGQTVSVHYTGWL-----TDGQKFDSSKDRNDPFAFVLGG-GMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARG 113 (133)
T ss_dssp SCBCCTTSEEEEEEEEEE-----TTSCEEEETTTTTCCEEEETTS-SSSCHHHHHHSTTCBTTCEEEEEECGGGTTTTTC
T ss_pred CCCCCCCCEEEEEEEEEE-----CCCCEEeccCcCCCCEEEEeCC-CChhHHHHHHHcCCCCCCEEEEEECcHHhCCCCC
Confidence 457889999999999983 4788888764 4789999994 6899999999999999999999999999999988
Q ss_pred CCC-----CeeEEEEEEeEe
Q 008989 336 LRG-----VQAQFTVECREL 350 (547)
Q Consensus 336 laG-----k~~~F~VtVk~I 350 (547)
++| +++.|+|+|.+|
T Consensus 114 ~~~~Ipp~~~l~f~VeL~~I 133 (133)
T 2y78_A 114 AGGVIPPNATLVFEVELLDV 133 (133)
T ss_dssp BTTTBCTTCCEEEEEEEEEC
T ss_pred CCCCCCCCCeEEEEEEEEEC
Confidence 877 899999999876
No 16
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=99.19 E-value=3.6e-11 Score=103.84 Aligned_cols=85 Identities=14% Similarity=0.243 Sum_probs=75.4
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCCc--cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCC--
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAET--KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL-- 336 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~--~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~l-- 336 (547)
++.||.|+++|+++. .+|+.|+++.. +++.|.+|. +.++|+|+++|.||++|++++|.++.+..|.....
T Consensus 16 ~~~gd~V~v~y~~~~-----~dG~~~d~s~~~~~p~~f~lG~-~~~i~g~~~~l~gm~~Ge~~~~~ip~~~ayG~~~~~~ 89 (107)
T 2ppn_A 16 PKRGQTCVVHYTGML-----EDGKKFDSSRDRNKPFKFMLGK-QEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPG 89 (107)
T ss_dssp CCTTCEEEEEEEEEE-----TTSCEEEEHHHHTSCEEEETTS-CCSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTT
T ss_pred CCCCCEEEEEEEEEE-----CCCCEEEecCCCCCCEEEEeCC-CChHHHHHHHHhCCCCCCEEEEEECHHHccCCCCCCC
Confidence 789999999999982 47888887643 689999994 68999999999999999999999998889988776
Q ss_pred ---CCCeeEEEEEEeEee
Q 008989 337 ---RGVQAQFTVECRELF 351 (547)
Q Consensus 337 ---aGk~~~F~VtVk~Ik 351 (547)
+|+++.|+|+|++|+
T Consensus 90 ~Ip~~~~l~f~v~l~~v~ 107 (107)
T 2ppn_A 90 IIPPHATLVFDVELLKLE 107 (107)
T ss_dssp TBCTTCCEEEEEEEEEEC
T ss_pred CcCCCCeEEEEEEEEEeC
Confidence 899999999999984
No 17
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}
Probab=99.19 E-value=6.9e-11 Score=106.10 Aligned_cols=84 Identities=17% Similarity=0.304 Sum_probs=75.7
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCCc--cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCC--
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAET--KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL-- 336 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~--~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~l-- 336 (547)
++.||.|+|+|+++. .+|+.|+++.. +++.|.+|. +.++|||+++|.||++|+++.|.++++..|....+
T Consensus 40 ~~~gd~V~v~Y~g~~-----~dG~~fdss~~~~~p~~f~lG~-g~vi~G~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~~~ 113 (130)
T 2lgo_A 40 PQAGKKVTVHYDGRF-----PDGKQFDSSRSRGKPFQFTLGA-GEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPP 113 (130)
T ss_dssp CCTTSEEEEEEEEEC-----TTSCEEECTTTTTCCEEEETTS-TTSCHHHHHHHHHSCTTEEEEEEECTTTSTTTTCCST
T ss_pred CCCCCEEEEEEEEEE-----CCCCEEEccCcCCCCEEEEeCC-CCccHHHHHHHhCCCCCCEEEEEECcHHHCCCCCCCC
Confidence 789999999999982 47899988754 689999994 68999999999999999999999999999998887
Q ss_pred ---CCCeeEEEEEEeEe
Q 008989 337 ---RGVQAQFTVECREL 350 (547)
Q Consensus 337 ---aGk~~~F~VtVk~I 350 (547)
+|+++.|+|+|++|
T Consensus 114 ~Ip~~~~l~f~VeL~~i 130 (130)
T 2lgo_A 114 VIPPKATLVFEVELLAV 130 (130)
T ss_dssp TSCSSCCEEEEEEEEEC
T ss_pred CcCCCCeEEEEEEEEEC
Confidence 88999999999876
No 18
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=99.18 E-value=6.7e-11 Score=110.71 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=88.3
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCCc--cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcC---
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAET--KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH--- 335 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~--~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~--- 335 (547)
++.||.|+|+|+++. .+|+.|+++.. .++.|.+| .++|||+++|.||++|++++|.++++..|+...
T Consensus 53 ~~~gd~V~v~Y~g~l-----~dG~~fdss~~~g~p~~f~lg---~vI~G~eeaL~gMk~Ge~~~~~Ip~~laYG~~g~~~ 124 (167)
T 1jvw_A 53 PAIDDKCEVHYTGRL-----RDGTVFDSSRERGKPTTFRPN---EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGG 124 (167)
T ss_dssp CCTTCCEEEEEEEEC-----TTSCEEEEHHHHTSCEEECGG---GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCSSS
T ss_pred CCCCCEEEEEEEEEE-----CCCCEEeeccccCCCEEEEeC---chhHHHHHHHcCCCCCCEEEEEECchhhCCCCCCCC
Confidence 778999999999982 47899987643 78888885 599999999999999999999999888898765
Q ss_pred --CCCCeeEEEEEEeEeeecCCCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHH
Q 008989 336 --LRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCRE 386 (547)
Q Consensus 336 --laGk~~~F~VtVk~Ik~~~lPELdDEfak~l~~~~~Tleelr~~Ik~~l~~ 386 (547)
.+|+++.|+|+|++|++. | ...|.+++++.|++.++.
T Consensus 125 ~Ipp~s~LiF~VeL~~i~~~--~------------~~~~~~e~~~~l~k~~~~ 163 (167)
T 1jvw_A 125 MIPPYSPLEFDVELISIKDG--G------------KGRTAEEVDEILRKAEED 163 (167)
T ss_dssp SSCTTCCEEEEEEEEEEGGG--C------------CSCBHHHHHHHHHHHHHC
T ss_pred CcCCCCeEEEEEEEEEEEcC--C------------CCCCHHHHHHHHHHHhhh
Confidence 478999999999999743 1 235889999999988765
No 19
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=99.16 E-value=1.1e-10 Score=107.43 Aligned_cols=90 Identities=12% Similarity=0.160 Sum_probs=77.4
Q ss_pred ccCcccccEEEEEEEEeeeccCCC-CCcccCCCC-ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCC---
Q 008989 258 DRGLQVGDIAIVDISATTIDEDES-NVQNIPDAE-TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWR--- 332 (547)
Q Consensus 258 dr~~~~GD~V~id~~~~~~d~d~~-~G~~~~~~~-~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~--- 332 (547)
.++++.||.|+++|+++. . +|+.|+++. .+++.|.+|. ++++|||+++|.||++|++++|.++.++.|+
T Consensus 4 ~~~i~~gd~V~v~Y~g~~-----~~dG~~fdss~~~~p~~f~~G~-g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~ 77 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVRE-----QGSSIVLDSNISKEPLEFIIGT-NQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE 77 (151)
T ss_dssp CCCTTSCCEEEEEEEEEE-----SSCSCEEEESTTTCCEEEETTC-CCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC
T ss_pred ccCCCCCCEEEEEEEEEE-----CCCCCEEEeCCCCcCEEEEECC-CCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC
Confidence 467899999999999982 3 789998875 4799999994 6899999999999999999999998666552
Q ss_pred -------------------------------------------------CcCCCCCeeEEEEEEeEeeec
Q 008989 333 -------------------------------------------------QEHLRGVQAQFTVECRELFYR 353 (547)
Q Consensus 333 -------------------------------------------------~~~laGk~~~F~VtVk~Ik~~ 353 (547)
+..|||++++|+|+|.+|...
T Consensus 78 ~~~v~~v~~~~f~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v~v~~v~~a 147 (151)
T 2kr7_A 78 SSYLQEVPRDQFEGIELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRFKVLGFREV 147 (151)
T ss_dssp SCEEEEEEGGGGTTSCCCTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCEEEEEEEEEEECC
T ss_pred cceEEEEcHHHcCCCCCccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEEEEEEEEEEeecC
Confidence 567999999999999999753
No 20
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=99.10 E-value=1.3e-10 Score=107.53 Aligned_cols=84 Identities=14% Similarity=0.302 Sum_probs=72.8
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCCc---------------cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEE
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAET---------------KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRL 325 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~---------------~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~ 325 (547)
++.||.|+|+|+++ .+|+.|+++.. +++.|.+|. ++++|||+++|.||++|++++|.+
T Consensus 2 i~~Gd~V~v~Y~g~------ldG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~-g~vi~G~eeaL~gm~~Ge~~~v~I 74 (157)
T 3pr9_A 2 VEKGKMVKISYDGY------VDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGE-GQVLPGLDEAILEMDVGEEREVVL 74 (157)
T ss_dssp CCTTCEEEEEEEEE------ETTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTS-SSSCHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCCEEEEEEEEE------ECCEEEEeccccccccccccccccCCCCEEEEECC-CcHHHHHHHHHcCCCCCCEEEEEE
Confidence 68899999999998 36788876543 689999994 689999999999999999999999
Q ss_pred eCCCCCC-------------------------------------------------CcCCCCCeeEEEEEEeEee
Q 008989 326 AFPESWR-------------------------------------------------QEHLRGVQAQFTVECRELF 351 (547)
Q Consensus 326 ~fPedy~-------------------------------------------------~~~laGk~~~F~VtVk~Ik 351 (547)
+.+..|. +..||||+++|+|+|.+|-
T Consensus 75 pp~~aYG~~~~~~V~~v~~~~f~~~~~~~~~G~~~~~~~~~~~V~~v~~~~V~vD~NHPLAG~~L~F~v~v~~v~ 149 (157)
T 3pr9_A 75 PPEKAFGKRDPSKIKLIPLSEFTKRGIKPIKGLTITIDGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVV 149 (157)
T ss_dssp CGGGTTCCCCGGGEEEEEHHHHHHTTCCCCTTCEEEETTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEEE
T ss_pred CcHHhcCCCChHhEEEcCHHHCCcccCCcCCCcEEEecCCCeEEEEEcCCEEEEECCCccCCCeEEEEEEEEEEE
Confidence 9777773 6789999999999999884
No 21
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=99.08 E-value=2.5e-10 Score=106.90 Aligned_cols=88 Identities=17% Similarity=0.281 Sum_probs=75.1
Q ss_pred CcccccEEEEEEEEeeeccCCCCCcccCCCCc--cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCC-----
Q 008989 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAET--KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWR----- 332 (547)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~--~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~----- 332 (547)
.++.||.|+|+|+++. .+|+.|+++.. +++.|.+|. +.++|||+++|.||++|++++|.++....|+
T Consensus 24 ~i~~gd~V~v~Y~g~l-----~dG~vfDss~~~~~P~~f~lG~-g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKL-----DDGTTAESTRNNGKPALFRLGD-ASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEE-----TTSCEEEEHHHHTSCEEEETTS-SSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEE-----CCCCEEEecCCCCCCEEEEECC-CCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 6899999999999983 47888887543 789999994 6899999999999999999999998554442
Q ss_pred ------------------------------------------------CcCCCCCeeEEEEEEeEeeec
Q 008989 333 ------------------------------------------------QEHLRGVQAQFTVECRELFYR 353 (547)
Q Consensus 333 ------------------------------------------------~~~laGk~~~F~VtVk~Ik~~ 353 (547)
+..||||+++|+|+|.+|...
T Consensus 98 lv~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~vr~A 166 (169)
T 4dt4_A 98 LIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPA 166 (169)
T ss_dssp GEEEEEGGGGTTTCCCCTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEESCC
T ss_pred HEEEeCHHHCCCcCCCCCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEeeC
Confidence 567999999999999999653
No 22
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=99.07 E-value=4.4e-10 Score=98.85 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=74.7
Q ss_pred CcccccEEEEEEEEeeeccCCCCCcccCCCCc---------cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCC
Q 008989 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAET---------KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPES 330 (547)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~---------~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPed 330 (547)
.++.||.|+++|+++. .+|+.|+++.. +++.|.+|. +.++|||+++|.||++|+++.|.++.+..
T Consensus 19 ~p~~gd~V~v~Y~g~~-----~dG~~fdss~~~~~~~~~~~~p~~f~lG~-~~~i~G~e~~l~gm~~Ge~~~v~ip~~~a 92 (119)
T 3kz7_A 19 FPKKGDVVHCWYTGTL-----PDGTVFDTNIQTSSKKKKNAKPLSFKVGV-GKVIRGWDEALLTMSKGEKARLEIEPEWA 92 (119)
T ss_dssp CCCTTCEEEEEEEEEC-----TTSCEEEECCCCSSSTTTTCCCEEEETTS-SSSCHHHHHHHTTCCTTCEEEEEECGGGT
T ss_pred cCCCCCEEEEEEEEEE-----CCCCEEEeccccccccccCCCCEEEEECC-CChhHHHHHHHhCCCCCCEEEEEECcHHh
Confidence 3789999999999983 47888887643 789999994 68999999999999999999999999999
Q ss_pred CCCcCC------CCCeeEEEEEEeEe
Q 008989 331 WRQEHL------RGVQAQFTVECREL 350 (547)
Q Consensus 331 y~~~~l------aGk~~~F~VtVk~I 350 (547)
|..... ++.++.|+|+|++|
T Consensus 93 YG~~g~~~~~Ip~~~~l~f~veL~~i 118 (119)
T 3kz7_A 93 YGKKGQPDAKIPPNTKLIFEVELVDI 118 (119)
T ss_dssp TCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred cCCCCCCCCccCcCCeEEEEEEEEEe
Confidence 987765 78899999999987
No 23
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=99.07 E-value=8.4e-11 Score=115.29 Aligned_cols=95 Identities=14% Similarity=0.242 Sum_probs=78.0
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCCc---------------cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEE
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAET---------------KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRL 325 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~---------------~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~ 325 (547)
++.||.|+++|+++ .+|+.|+++.. +++.|.+| .++++|||+++|.||++|++++|.+
T Consensus 2 i~~Gd~V~v~Y~g~------ldG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG-~g~vIpG~eeaL~Gm~vGek~~v~I 74 (231)
T 3prb_A 2 VEKGKMVKISYDGY------VDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAG-EGQVLPGLDEAILEMDVGEEREVVL 74 (231)
T ss_dssp CCTTCEEEEEEEEE------ETTEEEEESCHHHHHHTTCCCTTSCCSCEEEETT-SSSSCHHHHHHHHTCCTTCEEEEEE
T ss_pred CCCCCEEEEEEEEE------ECCEEEEeccchhcccccccccccCCCCEEEEeC-CCcHHHHHHHHHcCCCCCCEEEEEe
Confidence 68899999999998 36788876543 68999999 4689999999999999999999999
Q ss_pred e--------------------CCCC-----------------------------CCCcCCCCCeeEEEEEEeEeeecCCC
Q 008989 326 A--------------------FPES-----------------------------WRQEHLRGVQAQFTVECRELFYRDLP 356 (547)
Q Consensus 326 ~--------------------fPed-----------------------------y~~~~laGk~~~F~VtVk~Ik~~~lP 356 (547)
+ ||.+ -.+..|||++++|+|+|.+|......
T Consensus 75 ppe~AYGe~~~~lv~~vp~~~f~~~~~~~~vG~~~~~~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~eat~e 154 (231)
T 3prb_A 75 PPEKAFGKRDPSKIKLIPLSEFTKRGIKPIKGLTITIDGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVVDDKKN 154 (231)
T ss_dssp CGGGTTCCCCGGGEEEEETHHHHTTTCCCCTTCEEEETTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEECCSHHH
T ss_pred CcHHhcCCCChHHEEecCHHHCCcccCCCCCCcEEEecCCCEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEecCCHH
Confidence 8 4431 01568999999999999999887766
Q ss_pred CCCHHH
Q 008989 357 KLDDSL 362 (547)
Q Consensus 357 ELdDEf 362 (547)
++.+-|
T Consensus 155 ei~~~~ 160 (231)
T 3prb_A 155 IVKEIV 160 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665533
No 24
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=99.07 E-value=3.6e-10 Score=100.44 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=76.9
Q ss_pred ccCcccccEEEEEEEEeeeccCCC-CCcccCCCC----ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCC
Q 008989 258 DRGLQVGDIAIVDISATTIDEDES-NVQNIPDAE----TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWR 332 (547)
Q Consensus 258 dr~~~~GD~V~id~~~~~~d~d~~-~G~~~~~~~----~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~ 332 (547)
.+.++.||.|+|+|+++. . +|+.|+++. .+++.|.+|. +.++|||+++|.||++|+++.|.++.+..|.
T Consensus 26 g~~~~~gd~V~v~Y~g~~-----~~dG~~fdss~~~~~~~p~~f~lG~-~~~i~G~e~~l~gm~~Ge~~~~~ip~~~aYG 99 (125)
T 4dip_A 26 HRKTKGGDLMLVHYEGYL-----EKDGSLFHSTHKHNNGQPIWFTLGI-LEALKGWDQGLKGMCVGEKRKLIIPPALGYG 99 (125)
T ss_dssp SCCCCTTCEEEEEEEEEE-----TTTCCEEEEHHHHTTTCCEEEETTS-CSSCHHHHHHSTTCCTTCEEEEEECGGGTTT
T ss_pred CCcCCCCCEEEEEEEEEE-----CCCCcEEEEcccCCCCcCEEEEeCC-CChhHHHHHHHhCCCCCCEEEEEEChHHhcC
Confidence 467999999999999983 3 788888764 4789999994 6899999999999999999999999999998
Q ss_pred CcCC----CCCeeEEEEEEeEeee
Q 008989 333 QEHL----RGVQAQFTVECRELFY 352 (547)
Q Consensus 333 ~~~l----aGk~~~F~VtVk~Ik~ 352 (547)
.... ++.++.|+|+|++|++
T Consensus 100 ~~g~~~Ip~~~~l~f~vel~~i~~ 123 (125)
T 4dip_A 100 KEGKGKIPPESTLIFNIDLLEIRN 123 (125)
T ss_dssp TTCBTTBCTTCCEEEEEEEEEEEC
T ss_pred CCCCCCCCCCCeEEEEEEEEEEEc
Confidence 7653 4558999999999975
No 25
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=99.04 E-value=3.3e-10 Score=101.36 Aligned_cols=87 Identities=14% Similarity=0.174 Sum_probs=76.7
Q ss_pred ccCcccccEEEEEEEEeeeccCCCCCcccCCCC--ccCEEEEecCCCCCcccHHHhhcC------CCCCceEEEEEeCCC
Q 008989 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISG------IQRGETKSFRLAFPE 329 (547)
Q Consensus 258 dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG------~k~Ge~~~~~~~fPe 329 (547)
.+.++.||.|+|+|+++. .+|+.|+++. .+++.|.+|. +.++|+|+++|+| |++|++++|.++++.
T Consensus 24 G~~~~~gd~V~v~Y~g~~-----~dG~~fdss~~~~~p~~f~lG~-~~~i~G~~~~L~G~~~~~~m~~Ge~~~v~ip~~~ 97 (129)
T 1u79_A 24 GPEAVKGQLIKAHYVGKL-----ENGKVFDSSYNRGKPLTFRIGV-GEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPEL 97 (129)
T ss_dssp SCBCCTTCEEEEEEEEEC-----TTSCEEEEHHHHTSCEEEETTS-SSSCHHHHHHHHCBTTBCCCBTTCEEEEEECGGG
T ss_pred CCCCCCCCEEEEEEEEEE-----CCCCEEEecCCCCCCEEEEeCC-CCccHHHHHHhcccccccccCCCCEEEEEEChHH
Confidence 456889999999999982 4788888764 4789999994 6899999999999 999999999999989
Q ss_pred CCCCcCC----------CCCeeEEEEEEeEe
Q 008989 330 SWRQEHL----------RGVQAQFTVECREL 350 (547)
Q Consensus 330 dy~~~~l----------aGk~~~F~VtVk~I 350 (547)
.|..... +|+++.|+|+|++|
T Consensus 98 aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i 128 (129)
T 1u79_A 98 AYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128 (129)
T ss_dssp TTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred ccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence 9988776 79999999999987
No 26
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=2.8e-10 Score=102.76 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=75.3
Q ss_pred CcccccEEEEEEEEeeeccCCCCCcccCCCCccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcC----
Q 008989 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH---- 335 (547)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~---- 335 (547)
.++.||.|+|+|+++. .+|+.|+. .+++.|.+|. +.++|+|+++|.||++|++++|.++....|....
T Consensus 33 ~~~~gd~V~v~Y~g~~-----~dG~~fds--~~p~~f~lG~-g~~i~G~e~~L~gm~~Ge~~~v~ip~~~aYG~~~~~~~ 104 (135)
T 2d9f_A 33 RPVKGQVVTVHLQTSL-----ENGTRVQE--EPELVFTLGD-CDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSP 104 (135)
T ss_dssp CCCTTSEEEEEEEEEE-----SSSCEEEE--EEEEEEETTS-CCSCTTTTTTGGGSCTTCEEEEEECHHHHTCTTCCSSS
T ss_pred cCCCCCEEEEEEEEEE-----CCCCEEec--CCCEEEEeCC-CChhHHHHHHHhCCCCCCEEEEEEChhHccCcCCcCCC
Confidence 5889999999999983 47888875 5789999994 6899999999999999999999886444555544
Q ss_pred --CCCCeeEEEEEEeEeeecCCCCC
Q 008989 336 --LRGVQAQFTVECRELFYRDLPKL 358 (547)
Q Consensus 336 --laGk~~~F~VtVk~Ik~~~lPEL 358 (547)
.+|+++.|+|+|++|++..-+|+
T Consensus 105 ~Ip~~~~l~f~vel~~v~~~~~~e~ 129 (135)
T 2d9f_A 105 YIPPHAALCLEVTLKTAVDRPDLEM 129 (135)
T ss_dssp CCCTTCCEEEEEEEEEEESSCSSSS
T ss_pred ccCCCCeEEEEEEEEEeecCCchhh
Confidence 46899999999999988765554
No 27
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=99.04 E-value=4.8e-10 Score=107.42 Aligned_cols=86 Identities=10% Similarity=0.203 Sum_probs=73.8
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCCc-cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCC-------
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAET-KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWR------- 332 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~-~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~------- 332 (547)
++.||+|+|+|+++. .+|+.|+.+.. +++.|.+|. ++++|+|+++|+||++|++++|.+++++.|.
T Consensus 3 i~~gd~V~v~Y~g~~-----~dG~~fdss~~~~P~~f~lG~-g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~lV 76 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRT-----EDGVLVDESPVSAPLDYLHGH-GSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLV 76 (196)
T ss_dssp CCSSCEEEEEEEEEE-----TTTEEEEECCTTSCCEEESSS-SSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTTC
T ss_pred CCCCCEEEEEEEEEE-----CCCCEEEecCCCCCEEEEECC-CCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhhE
Confidence 678999999999982 47899988754 799999994 7899999999999999999999999665552
Q ss_pred ---------------------------------------------CcCCCCCeeEEEEEEeEeee
Q 008989 333 ---------------------------------------------QEHLRGVQAQFTVECRELFY 352 (547)
Q Consensus 333 ---------------------------------------------~~~laGk~~~F~VtVk~Ik~ 352 (547)
+..||||++.|+|+|.+|..
T Consensus 77 ~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~vr~ 141 (196)
T 2kfw_A 77 QRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIRE 141 (196)
T ss_dssp EEECGGGCCCSSCCCTTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCEEEEEECCCBC
T ss_pred EEEEHHHCCCccCcccCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEEeec
Confidence 34589999999999999864
No 28
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=99.02 E-value=3.5e-10 Score=101.97 Aligned_cols=88 Identities=13% Similarity=0.074 Sum_probs=69.5
Q ss_pred cCcccccEEEEEEEEeeeccCCCCCcccCCCC--ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCC
Q 008989 259 RGLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL 336 (547)
Q Consensus 259 r~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~l 336 (547)
+.++.||.|+|+|+++.. .+|+.|+++. .+++.|.+|. +.++|||+++|.||++|++++|.++....|.....
T Consensus 39 ~~~~~gd~V~v~Y~g~l~----~~G~~fdss~~~~~p~~f~lG~-g~~i~G~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~ 113 (134)
T 3b7x_A 39 DLVAPDASVLVKYSGYLE----HMDRPFDSNYFRKTPRLMKLGE-DITLWGMELGLLSMRRGELARFLFKPNYAYGTLGC 113 (134)
T ss_dssp EECCTTCEEEEEEEEECT----TCSSCSEEC-------CEEC-C-CCCCHHHHHHHHTCEETCEEEEEECGGGTTTTTCB
T ss_pred CCCCCCCEEEEEEEEEEC----CCCeEEEecCCCCCCEEEEcCC-cchhHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC
Confidence 457789999999999831 1588888765 4689999994 68999999999999999999998876556777766
Q ss_pred -----CCCeeEEEEEEeEee
Q 008989 337 -----RGVQAQFTVECRELF 351 (547)
Q Consensus 337 -----aGk~~~F~VtVk~Ik 351 (547)
+|+++.|+|+|++|+
T Consensus 114 ~~~Ip~~~~l~f~VeL~~i~ 133 (134)
T 3b7x_A 114 PPLIPPNTTVLFEIELLDFL 133 (134)
T ss_dssp TTTBCTTCCEEEEEEEEEEC
T ss_pred CCCcCcCCeEEEEEEEEEEe
Confidence 789999999999985
No 29
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=99.01 E-value=5.8e-10 Score=103.43 Aligned_cols=82 Identities=13% Similarity=0.289 Sum_probs=70.2
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCCccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCC--------
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWR-------- 332 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~-------- 332 (547)
++.||+|+++|+++ .+|+.|+++. +.|.+|. ++++|||+++|.||++|++++|.+++++.|.
T Consensus 3 i~~gd~V~v~Y~g~------~dG~~fdss~---~~f~~G~-g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQ------VEGEVLDQGE---LSYLHGH-RNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEE------ETTEEEEEEE---EEEETTS-SSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEE------ECCEEEEeeE---EEEEECC-CCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 67899999999998 4788888654 8899994 6899999999999999999999998544442
Q ss_pred ---------------------------------------------CcCCCCCeeEEEEEEeEeee
Q 008989 333 ---------------------------------------------QEHLRGVQAQFTVECRELFY 352 (547)
Q Consensus 333 ---------------------------------------------~~~laGk~~~F~VtVk~Ik~ 352 (547)
+..|||+++.|+|+|.+|..
T Consensus 73 ~v~~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAGk~L~F~vev~~v~~ 137 (158)
T 3cgm_A 73 VVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVRE 137 (158)
T ss_dssp EEEGGGSCTTSCCCTTCEEEEEETTTEEEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEEEE
T ss_pred EEEHHHCCCCCCCccCCEEEEECCCCCEEEEEEEEECCCEEEEeCCccccCCEEEEEEEEEEeec
Confidence 45689999999999999974
No 30
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=99.01 E-value=8.1e-10 Score=98.69 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=76.5
Q ss_pred CcccccEEEEEEEEeeeccCCCCCcccCCCC--ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCC-
Q 008989 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL- 336 (547)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~l- 336 (547)
.++.||.|+|+|+++. .+|+.|+++. .+++.|.+|. +.++|||+++|.||++|+++.|.++.+..|.....
T Consensus 34 ~p~~gd~V~v~Y~g~~-----~dG~~fdss~~~~~p~~f~lG~-g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~~ 107 (128)
T 3o5q_A 34 TPMIGDKVYVHYKGKL-----SNGKKFDSSHDRNEPFVFSLGK-GQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL 107 (128)
T ss_dssp CCCTTCEEEEEEEEEE-----TTSCEEEEHHHHTSCEEEETTS-SSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBT
T ss_pred cCCCCCEEEEEEEEEE-----CCCCEEEecCCCCCCEEEEECC-CCccHHHHHHHhcCCCCCEEEEEEChHHcCCCCCCC
Confidence 4689999999999983 4788888753 4689999994 68999999999999999999999999999988776
Q ss_pred ----CCCeeEEEEEEeEeee
Q 008989 337 ----RGVQAQFTVECRELFY 352 (547)
Q Consensus 337 ----aGk~~~F~VtVk~Ik~ 352 (547)
++.++.|+|+|++|+.
T Consensus 108 ~~Ip~~~~l~f~vel~~i~~ 127 (128)
T 3o5q_A 108 PKIPSNATLFFEIELLDFKG 127 (128)
T ss_dssp TTBCTTCCEEEEEEEEEEEC
T ss_pred CCcCCCCEEEEEEEEEEecC
Confidence 6899999999999974
No 31
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=99.01 E-value=7.6e-10 Score=97.38 Aligned_cols=84 Identities=13% Similarity=0.121 Sum_probs=71.9
Q ss_pred CcccccEEEEEEEEeeeccCCCCCcccCCCCccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCC---
Q 008989 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL--- 336 (547)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~l--- 336 (547)
.++.||.|+++|+++. .+|+.|++ .+++.|.+|. +.++|+|+++|.||++|+++.|.++....|.....
T Consensus 29 ~~~~gd~V~v~y~g~~-----~dG~~~ds--~~p~~f~lG~-~~~i~g~e~~l~gm~~Ge~~~~~ip~~~ayG~~~~~~~ 100 (118)
T 2awg_A 29 RPVKGQVVTVHLQTSL-----ENGTRVQE--EPELVFTLGD-CDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPY 100 (118)
T ss_dssp CCCTTSEEEEEEEEEC-----TTSCEEEE--EEEEEEETTS-SCSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCBTTT
T ss_pred cCCCCCEEEEEEEEEE-----CCCCEEEC--CCCEEEEECC-CChhHHHHHHHhCCCCCCEEEEEEChHHccCCCCCCCc
Confidence 5789999999999982 47888875 4789999994 68999999999999999999999876666766553
Q ss_pred --CCCeeEEEEEEeEee
Q 008989 337 --RGVQAQFTVECRELF 351 (547)
Q Consensus 337 --aGk~~~F~VtVk~Ik 351 (547)
+|+++.|+|+|++|+
T Consensus 101 Ip~~~~l~f~v~l~~v~ 117 (118)
T 2awg_A 101 IPPHAALCLEVTLKTAV 117 (118)
T ss_dssp BCTTCCEEEEEEEEEEE
T ss_pred cCCCCeEEEEEEEEEec
Confidence 789999999999986
No 32
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=98.99 E-value=1.3e-09 Score=99.42 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=76.3
Q ss_pred CcccccEEEEEEEEeeeccCCCCCcccCCCC--ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCC-
Q 008989 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL- 336 (547)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~l- 336 (547)
.++.||.|+|+|+++. .+|+.|+++. .+++.|.+|. +.++|||+++|.||++|+++.|.++.+..|.....
T Consensus 50 ~p~~gd~V~v~Y~g~~-----~dG~~fdss~~~~~p~~f~lG~-g~~i~G~e~~l~gm~~Ge~~~v~ipp~~aYG~~g~~ 123 (144)
T 3o5e_A 50 TPMIGDKVYVHYKGKL-----SNGKKFDSSHDRNEPFVFSLGK-GQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL 123 (144)
T ss_dssp CCCTTCEEEEEEEEEC-----TTSCEEEESGGGTSCEEEETTS-SSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBT
T ss_pred cCCCCCEEEEEEEEEE-----CCCCEEEeecccCCCeEEEeCC-CcccHHHHHHHhCCCCCCEEEEEEChHHCcCCCCCC
Confidence 4689999999999983 4789898764 3679999994 68999999999999999999999999999988766
Q ss_pred ----CCCeeEEEEEEeEeee
Q 008989 337 ----RGVQAQFTVECRELFY 352 (547)
Q Consensus 337 ----aGk~~~F~VtVk~Ik~ 352 (547)
++.++.|+|+|++|+.
T Consensus 124 ~~Ipp~~~L~f~VeL~~ikg 143 (144)
T 3o5e_A 124 PKIPSNATLFFEIELLDFKG 143 (144)
T ss_dssp TTBCTTCCEEEEEEEEEEEC
T ss_pred CCcCCCCeEEEEEEEEEecC
Confidence 6889999999999964
No 33
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=98.97 E-value=4.5e-10 Score=103.41 Aligned_cols=66 Identities=12% Similarity=0.265 Sum_probs=56.7
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCC---------------ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEE
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAE---------------TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRL 325 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~---------------~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~ 325 (547)
++.||.|+++|+++. .+|+.|+++. .+++.|.+|. +.++|||+++|.||++|++++|.+
T Consensus 2 i~~gd~V~v~Y~g~~-----~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~-g~vi~G~eeaL~gm~~Ge~~~v~i 75 (151)
T 1ix5_A 2 VDKGVKIKVDYIGKL-----ESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGE-GQLIQGFEEAVLDMEVGDEKTVKI 75 (151)
T ss_dssp CCTTCEEEECCEECC-----TTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTT-TCSCHHHHHHHHTCCTTCCCEEEE
T ss_pred CCCCCEEEEEEEEEE-----CCCCEEEecchhhcccccccccccCCCCEEEEECC-CChhHHHHHHHcCCCCCCEEEEEE
Confidence 678999999999982 4788888763 2689999994 689999999999999999999999
Q ss_pred eCCCCCC
Q 008989 326 AFPESWR 332 (547)
Q Consensus 326 ~fPedy~ 332 (547)
+.+..|+
T Consensus 76 pp~~aYG 82 (151)
T 1ix5_A 76 PAEKAYG 82 (151)
T ss_dssp CTTTSSC
T ss_pred CcHHHCC
Confidence 9777664
No 34
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=98.94 E-value=2e-09 Score=101.92 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=75.7
Q ss_pred ccCcccccEEEEEEEEeeeccCCCCCcccCCC--CccCEEEEecCCC-CCcccHHHhhcCCCCCceEEEEEeCCCCCCCc
Q 008989 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDA--ETKGFHFDTEDGD-KVLPGFLDSISGIQRGETKSFRLAFPESWRQE 334 (547)
Q Consensus 258 dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~--~~~~~~l~lg~~~-~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~ 334 (547)
++.++.||.|+|+|+++.. .+|+.|+++ ...++.|.+|. + .++|||+++|.||++|+++.|.++....|...
T Consensus 61 G~~~~~Gd~V~v~Y~g~l~----~dG~~fdss~~~~~p~~f~lG~-g~~vi~G~eeaL~gMk~Ge~~~v~iPp~~aYG~~ 135 (180)
T 2f4e_A 61 GSKPSKYSTCFLHYRAWTK----NSQHKFEDTWHEQQPIELVLGK-EKKELAGLAIGVASMKSGERALVHVGWELAYGKE 135 (180)
T ss_dssp SCCBCTTCEEEEEEEEEET----TTCCEEEETTTTTCCEEEETTS-CCGGGHHHHHHHTTCCBTCEEEEEECGGGTTTTT
T ss_pred CCCCCCCCEEEEEEEEEEC----CCCcEEeccCccCCCEEEEeCC-CCchhHHHHHHHhCCCCCCEEEEEECchHhCCcC
Confidence 3568899999999999831 258888876 34789999994 5 79999999999999999999998755566655
Q ss_pred C-------CCCCeeEEEEEEeEeeecC
Q 008989 335 H-------LRGVQAQFTVECRELFYRD 354 (547)
Q Consensus 335 ~-------laGk~~~F~VtVk~Ik~~~ 354 (547)
. .+|.++.|+|+|++|+...
T Consensus 136 g~~~~~~Ip~~s~l~F~VeL~~v~~~~ 162 (180)
T 2f4e_A 136 GNFSFPNVPPMADLLYEVEVIGFDETK 162 (180)
T ss_dssp CBSSSSCBCTTCCEEEEEEEEEESCBC
T ss_pred CcccCCCcCCCCeEEEEEEEEEEecCc
Confidence 4 4789999999999997754
No 35
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=98.90 E-value=3e-09 Score=104.02 Aligned_cols=86 Identities=15% Similarity=0.287 Sum_probs=75.3
Q ss_pred ccCcccccEEEEEEEEeeeccCCCCCcccCCCCc--cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcC
Q 008989 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDAET--KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH 335 (547)
Q Consensus 258 dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~--~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~ 335 (547)
++.++.||.|+|+|+++. .+|+.|+++.. .++.|.+| .++|||+++|.||++|++++|.++.+..|+...
T Consensus 133 G~~p~~gD~V~V~Y~g~l-----~dG~vfdss~~~g~p~~f~lg---~vI~G~eeaL~gMk~Gek~~v~IP~~laYG~~g 204 (224)
T 1q6h_A 133 GEAPKDSDTVVVNYKGTL-----IDGKEFDNSYTRGEPLSFRLD---GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAG 204 (224)
T ss_dssp SCCCCTTCEEEEEEEEEE-----TTSCEEEEGGGGTSCEEEEGG---GSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTC
T ss_pred CccccCCCEEEEEEEEEe-----CCCCEEeeccccCCCEEEEcC---CcchhHHHHHcCCCCCCEEEEEECchhhcCcCC
Confidence 345789999999999983 47889987653 68888885 599999999999999999999999888999888
Q ss_pred C----CCCeeEEEEEEeEee
Q 008989 336 L----RGVQAQFTVECRELF 351 (547)
Q Consensus 336 l----aGk~~~F~VtVk~Ik 351 (547)
. +|.++.|+|+|++|+
T Consensus 205 ~~~IPp~stLiF~VeL~~ik 224 (224)
T 1q6h_A 205 VPGIPPNSTLVFDVELLDVK 224 (224)
T ss_dssp BTTBCTTCCEEEEEEEEEEC
T ss_pred CCCCCCCCEEEEEEEEEEeC
Confidence 7 899999999999985
No 36
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=98.90 E-value=3.8e-09 Score=97.82 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=73.6
Q ss_pred CcccccEEEEEEEEeeeccCCCCCcccCCCCccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCC---
Q 008989 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL--- 336 (547)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~l--- 336 (547)
.++.||.|+|+|+++. .+|+.|++ .+++.|.+|. +.++|||+++|.||++|++++|.++....|....+
T Consensus 59 ~p~~gd~V~v~Y~g~l-----~dG~~fds--~~p~~f~lG~-g~vi~G~eeaL~gMk~Ge~~~v~IP~~~aYG~~g~~~~ 130 (157)
T 2jwx_A 59 RPVKGQVVTVHLQTSL-----ENGTRVQE--EPELVFTLGD-CDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSP 130 (157)
T ss_dssp CCCTTEEEEEEEEEEC-----TTSCEEEE--EEEEEEETTT-TSSCHHHHHHTTTSCTTCEEEEEECGGGTTTTTCCSSS
T ss_pred CCCCCCEEEEEEEEEE-----CCCCEeec--CCCEEEEeCC-CChhHHHHHHHcCCCCCCEEEEEECchhcCCcccccCC
Confidence 5789999999999983 47888886 4789999994 68999999999999999999999875556776653
Q ss_pred ---CCCeeEEEEEEeEeeecC
Q 008989 337 ---RGVQAQFTVECRELFYRD 354 (547)
Q Consensus 337 ---aGk~~~F~VtVk~Ik~~~ 354 (547)
+|.++.|+|+|.+|+..+
T Consensus 131 ~IPp~stLiF~VeL~~i~~~~ 151 (157)
T 2jwx_A 131 YIPPHAALCLEVTLKTAVDLE 151 (157)
T ss_dssp CCCTTCCEEEEEEEEEEEECS
T ss_pred CcCCCCeEEEEEEEEEEEccc
Confidence 468999999999998754
No 37
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=98.88 E-value=3.5e-09 Score=102.76 Aligned_cols=87 Identities=13% Similarity=0.160 Sum_probs=75.1
Q ss_pred ccCcccccEEEEEEEEeeeccCCCCCcccCCCCc--cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcC
Q 008989 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDAET--KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH 335 (547)
Q Consensus 258 dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~--~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~ 335 (547)
++.++.||.|+|+|+++. .+|+.|+++.. .++.|.+| .++|||+++|.||++|++++|.++.+..|+...
T Consensus 118 G~~p~~gD~V~V~Y~g~l-----~dG~vfdss~~~g~p~~f~lg---~vI~G~eeaL~gMk~Gek~~v~IP~~laYG~~g 189 (213)
T 1fd9_A 118 GVKPGKSDTVTVEYTGRL-----IDGTVFDSTEKTGKPATFQVS---QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRS 189 (213)
T ss_dssp SCCCCTTCEEEEEEEEEE-----TTSCEEEEHHHHCSCEEEEGG---GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTCC
T ss_pred CccCCCCCEEEEEEEEEE-----CCCCEEeeccccCCCEEEEcC---chhhHHHHHHcCCCCCCEEEEEECchhccCccC
Confidence 345788999999999983 47899987643 68889885 599999999999999999999999888898765
Q ss_pred C-----CCCeeEEEEEEeEeee
Q 008989 336 L-----RGVQAQFTVECRELFY 352 (547)
Q Consensus 336 l-----aGk~~~F~VtVk~Ik~ 352 (547)
. +|.++.|+|+|.+|++
T Consensus 190 ~~~~Ipp~stLiF~VeLl~v~~ 211 (213)
T 1fd9_A 190 VGGPIGPNETLIFKIHLISVKK 211 (213)
T ss_dssp CSSSCCTTCCEEEEEEEEEEEC
T ss_pred CCCCCCCCCeEEEEEEEEEEEc
Confidence 4 8899999999999975
No 38
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=98.85 E-value=5.3e-09 Score=109.15 Aligned_cols=88 Identities=14% Similarity=0.243 Sum_probs=77.8
Q ss_pred cCcccccEEEEEEEEeeeccCCCCCcccCCCC---ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcC
Q 008989 259 RGLQVGDIAIVDISATTIDEDESNVQNIPDAE---TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH 335 (547)
Q Consensus 259 r~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~---~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~ 335 (547)
+.++.||.|+|+|+++. .+|+.|+++. .+++.|.+|. ++++|||+++|.||++||+++|.++++..|+...
T Consensus 258 ~~~~~gd~V~v~y~g~l-----~dG~~fd~~~~~~~~p~~f~~G~-g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~ 331 (356)
T 3jxv_A 258 ERPNEGAVVTVKITGKL-----QDGTVFLKKGHDEQEPFEFKTDE-EAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTE 331 (356)
T ss_dssp CCCCTTCEEEEEEEEEE-----SSSCEEEEESCTTSCCCEEETTT-TSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSC
T ss_pred CCCCCCCEEEEEEEEEE-----CCCCEEeeccccCCcCEEEEECC-CccchHHHHHHhCCCCCCEEEEEEChHHccCCCC
Confidence 56889999999999983 4788887653 5789999994 6899999999999999999999999999998765
Q ss_pred -------CCCCeeEEEEEEeEeee
Q 008989 336 -------LRGVQAQFTVECRELFY 352 (547)
Q Consensus 336 -------laGk~~~F~VtVk~Ik~ 352 (547)
.+|+++.|+|++++|++
T Consensus 332 ~~~~~~Ip~~~~l~f~vel~~~~~ 355 (356)
T 3jxv_A 332 SKQDAIVPPNSTVIYEVELVSFVK 355 (356)
T ss_dssp EESSSEECTTCCEEEEEEEEEEEC
T ss_pred cCCCCcCCcCCeEEEEEEEEEEEc
Confidence 58999999999999974
No 39
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.84 E-value=7.4e-09 Score=100.26 Aligned_cols=87 Identities=14% Similarity=0.247 Sum_probs=75.7
Q ss_pred ccCcccccEEEEEEEEeeeccCCCCCcccCCCC--ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcC
Q 008989 258 DRGLQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH 335 (547)
Q Consensus 258 dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~ 335 (547)
...++.||.|+++|+++. .+|+.|+++. .+++.|.+|. +.++|||+++|.||++|++++|.++.+..|+...
T Consensus 116 G~~~~~gd~V~v~Y~g~l-----~dG~~fdss~~~~~P~~f~lG~-g~vi~G~eeaL~gM~~Ge~~~v~Ipp~~aYG~~g 189 (209)
T 3uf8_A 116 GAEARAGQTVSVHYTGWL-----TDGQKFDSSKDRNDPFAFVLGG-GMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARG 189 (209)
T ss_dssp SCBCCTTCEEEEEEEEEE-----TTSCEEEESGGGTCCEEEETTS-SSSCHHHHHHHTTCBTTCEEEEEECGGGTTTTTC
T ss_pred CCcCCCCCEEEEEEEEEE-----CCCCEEEEccccCCCEEEEeCC-CccchhHHHHHhCCCCCCEEEEEECcHHhCCCCC
Confidence 345889999999999983 4788888764 3679999994 6899999999999999999999999999998876
Q ss_pred C-----CCCeeEEEEEEeEe
Q 008989 336 L-----RGVQAQFTVECREL 350 (547)
Q Consensus 336 l-----aGk~~~F~VtVk~I 350 (547)
. ++.++.|+|+|.+|
T Consensus 190 ~~~~IP~~s~LvF~VeL~~I 209 (209)
T 3uf8_A 190 AAGVIPPNATLVFEVELLDV 209 (209)
T ss_dssp BTTTBCTTCCEEEEEEEEEC
T ss_pred CCCCcCCCCeEEEEEEEEEC
Confidence 6 67899999999876
No 40
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=98.82 E-value=5.7e-09 Score=105.50 Aligned_cols=85 Identities=11% Similarity=0.191 Sum_probs=70.1
Q ss_pred CcccccEEEEEEEEeeeccCCCCCcccCCCCccCEEEEecCCCC---CcccHHHhhcCCCCCceEEEEEeCCCCCCCc--
Q 008989 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDK---VLPGFLDSISGIQRGETKSFRLAFPESWRQE-- 334 (547)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~---~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~-- 334 (547)
+++.||.|+|+|+++ .+|+.|++ +++.|.+|. +. ++|||+++|+||++||+++|.++-.-.|...
T Consensus 183 ~~~~gd~V~i~y~g~------~dG~~fd~---~~~~f~lG~-g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~ 252 (280)
T 1q1c_A 183 KPNEGAIVEVALEGY------YKDKLFDQ---RELRFEIGE-GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGK 252 (280)
T ss_dssp CCCTTCEEEEEEEEE------ETTEEEEE---EEEEEETTC-GGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB
T ss_pred cccCCceEEEEEEEE------eCCEEEec---CCeEEEecC-CcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCC
Confidence 578999999999998 47888885 589999995 44 6999999999999999999888422245543
Q ss_pred -CC---CCCeeEEEEEEeEeeecC
Q 008989 335 -HL---RGVQAQFTVECRELFYRD 354 (547)
Q Consensus 335 -~l---aGk~~~F~VtVk~Ik~~~ 354 (547)
.+ +|+++.|+|+|++|++..
T Consensus 253 ~~~~IP~~~~l~f~V~L~~i~~~~ 276 (280)
T 1q1c_A 253 EKFQIPPNAELKYELHLKSFEKAK 276 (280)
T ss_dssp GGGTBCTTCCEEEEEEEEEEECCC
T ss_pred ccCccCCCCeEEEEEEEEEEeCCC
Confidence 36 899999999999998754
No 41
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=98.79 E-value=1.5e-08 Score=98.49 Aligned_cols=85 Identities=11% Similarity=0.140 Sum_probs=75.6
Q ss_pred cCcccccEEEEEEEEeeeccCCCCCcccCCCCccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCCCC
Q 008989 259 RGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRG 338 (547)
Q Consensus 259 r~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~laG 338 (547)
..+..||.|+|+|+++. .+|+.|+++ ..++.|.+| .++|||+++|.||++|+++.|.++.+..|+.....|
T Consensus 130 ~~p~~gd~V~V~Y~g~l-----~dG~vfDss-~~P~~f~lG---~vI~G~eeaL~gMk~Gek~~v~IPp~lAYG~~g~~~ 200 (219)
T 3oe2_A 130 PKPDANGRVEVRYVGRL-----PDGKIFDQS-TQPQWFRLD---SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGAGD 200 (219)
T ss_dssp CCCCTTSEEEEEEEEEC-----TTSCEEEEC-SSCEEEEGG---GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTT
T ss_pred ccCCCCCEEEEEEEEEE-----CCCCEeecc-CCcEEEEec---chhHHHHHHHhCCCCCCEEEEEECchhcCCCCCCCC
Confidence 45789999999999983 579999877 788999987 599999999999999999999999999998887766
Q ss_pred -----CeeEEEEEEeEeee
Q 008989 339 -----VQAQFTVECRELFY 352 (547)
Q Consensus 339 -----k~~~F~VtVk~Ik~ 352 (547)
.++.|+|+|.+|++
T Consensus 201 ~IPpnstLvFeVeLl~Ik~ 219 (219)
T 3oe2_A 201 LIDPFTPLVFEIELIAVSQ 219 (219)
T ss_dssp TBCTTCCEEEEEEEEEEEC
T ss_pred CCCCCCeEEEEEEEEEEeC
Confidence 89999999999974
No 42
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.78 E-value=8e-09 Score=106.21 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=77.6
Q ss_pred cCcccccEEEEEEEEeeeccCCCCCcccCCC--CccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCC
Q 008989 259 RGLQVGDIAIVDISATTIDEDESNVQNIPDA--ETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL 336 (547)
Q Consensus 259 r~~~~GD~V~id~~~~~~d~d~~~G~~~~~~--~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~l 336 (547)
..+..||.|+|+|+++.. .+|+.|+++ ..+++.|.+|.+..++|||+++|.||++|+++.|.++++..|+....
T Consensus 62 ~~~~~gd~v~v~y~g~~~----~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~i~~~~~yg~~~~ 137 (338)
T 2if4_A 62 SKPSKYSTCFLHYRAWTK----NSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGN 137 (338)
T ss_dssp CCCCTTCEEEEEEEEEET----TTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEEECGGGSSCSSCC
T ss_pred CCCCCCCEEEEEEEEEEc----CCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEEECHHHhcCCCCC
Confidence 467899999999999831 248888875 45789999995227999999999999999999999999999988776
Q ss_pred -------CCCeeEEEEEEeEeeec
Q 008989 337 -------RGVQAQFTVECRELFYR 353 (547)
Q Consensus 337 -------aGk~~~F~VtVk~Ik~~ 353 (547)
.|.++.|.|++..+...
T Consensus 138 ~~~~~ip~~~~l~f~v~L~~~~~~ 161 (338)
T 2if4_A 138 FSFPNVPPMADLLYEVEVIGFDET 161 (338)
T ss_dssp CSSSCCCTTCCEEEEEEEEEEECC
T ss_pred CCCCCCCCCCcEEEEEEEEEecCC
Confidence 68899999999999763
No 43
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=98.75 E-value=2.7e-08 Score=100.56 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=77.8
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCC--ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcC---
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH--- 335 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~--- 335 (547)
++.||.|+|+|+++. .+|+.|+++. .+++.|.+|. +.++|||+++|.||++|++++|.++.+..|....
T Consensus 67 ~~~gd~V~v~Y~g~~-----~dG~~fdss~~~~~p~~f~lG~-g~vi~G~e~aL~gm~~Ge~~~v~ipp~~aYG~~g~~~ 140 (280)
T 1q1c_A 67 PMIGDRVFVHYTGWL-----LDGTKFDSSLDRKDKFSFDLGK-GEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPP 140 (280)
T ss_dssp CCTTCEEEEEEEEEE-----TTSCEEEESTTSSSCEEEETTT-TSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTT
T ss_pred CCCCCEEEEEEEEEE-----CCCCEEEecccCCCCEEEEECC-cChhHHHHHHHhcCCCCCEEEEEECcHHhCCCcCccC
Confidence 778999999999983 4788888765 3789999994 6899999999999999999999998777887655
Q ss_pred --CCCCeeEEEEEEeEeeecCCC
Q 008989 336 --LRGVQAQFTVECRELFYRDLP 356 (547)
Q Consensus 336 --laGk~~~F~VtVk~Ik~~~lP 356 (547)
.+|.++.|+|++.+|+...+.
T Consensus 141 ~Ip~~~~lvf~Vel~~i~~~~~~ 163 (280)
T 1q1c_A 141 KIPPNATLVFEVELFEFKGEDLT 163 (280)
T ss_dssp TBCTTCCEEEEEEEEEEECEECC
T ss_pred CCCCCCcEEEEEEeeeecccccc
Confidence 789999999999999876544
No 44
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.74 E-value=1.3e-08 Score=108.91 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=76.0
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCC--ccCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCC--
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAE--TKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL-- 336 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~--~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~l-- 336 (547)
++.||.|+|+|+++. .+|+.|+++. .+++.|.+|. +.++|||+++|.||++|++++|.++.+..|+....
T Consensus 47 ~~~gd~v~v~y~~~~-----~~g~~~dss~~~~~p~~~~~g~-~~~i~g~~~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~ 120 (457)
T 1kt0_A 47 PMIGDKVYVHYKGKL-----SNGKKFDSSHDRNEPFVFSLGK-GQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLP 120 (457)
T ss_dssp CCBTCEEEEEEEEEC----------CBC------CEEEETTS-TTSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTT
T ss_pred CCCCCEEEEEEEEEE-----CCCCEEeccCCCCCCeEEEeCC-cchhhHHHHHHhhCCCCCEEEEEEChHHhccccCCCC
Confidence 789999999999982 4789998853 3689999994 68999999999999999999999998888986653
Q ss_pred ---CCCeeEEEEEEeEeeecCCCCCCHHHHhh
Q 008989 337 ---RGVQAQFTVECRELFYRDLPKLDDSLAGK 365 (547)
Q Consensus 337 ---aGk~~~F~VtVk~Ik~~~lPELdDEfak~ 365 (547)
+|.++.|+|++.+|+...++ .|..++++
T Consensus 121 ~i~~~~~l~~~v~l~~~~~~~~~-~dg~~~k~ 151 (457)
T 1kt0_A 121 KIPSNATLFFEIELLDFKGEDLF-EDGGIIRR 151 (457)
T ss_dssp TBCTTCCEEEEEEEEEEECEETT-SSSSEEEE
T ss_pred CCCCCCcEEEEEeeceeeccccc-CCcceEEE
Confidence 88999999999999886555 34445544
No 45
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=98.51 E-value=6.8e-09 Score=108.33 Aligned_cols=102 Identities=20% Similarity=0.252 Sum_probs=12.8
Q ss_pred CcccccEEEEEEEEeeeccCCCCCcccCCCCc--cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCCC
Q 008989 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAET--KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLR 337 (547)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~--~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~la 337 (547)
.++.||.|+++|+++. .+|+.|+++.. +++.|.+|. +.++|||+++|.||++|+++.|.++++..|......
T Consensus 26 ~~~~gd~V~v~Y~g~~-----~dG~~fdss~~~~~p~~~~lG~-g~~i~g~e~~l~gm~~Ge~~~~~ip~~~aYG~~g~~ 99 (356)
T 3jxv_A 26 TPEVGDEVEVHYTGTL-----LDGKKFDSSRDRDDTFKFKLGQ-GQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSP 99 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCEEEEEEEEEE-----CCCCEEEEcccCCCcEEEEeCC-CccchHHHHHHhcCCCCCEEEEEEChHHhCCCCCCC
Confidence 4789999999999983 47888988754 689999994 689999999999999999999999999999887776
Q ss_pred -----CCeeEEEEEEeEeeecCCCCCCHHHHhhhC
Q 008989 338 -----GVQAQFTVECRELFYRDLPKLDDSLAGKLL 367 (547)
Q Consensus 338 -----Gk~~~F~VtVk~Ik~~~lPELdDEfak~l~ 367 (547)
|.++.|+|++.+++.+.-...|+.+++++.
T Consensus 100 ~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~ 134 (356)
T 3jxv_A 100 PTIPANATLQFDVELLSWTSVRDIAKDGGIFKKIL 134 (356)
T ss_dssp ------------------CCEEETTSSSSEEEEEE
T ss_pred CCcCCCCEEEEEeeEEeeecccccccCceeEEEEE
Confidence 889999999999988777777888887763
No 46
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=98.36 E-value=4.7e-07 Score=84.28 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=53.5
Q ss_pred cccccEEEEEEEEeeeccCCCCCcccCCCCc--cCEEEEecCCCCCcccHHHhhcCCCCCceEEEEEe
Q 008989 261 LQVGDIAIVDISATTIDEDESNVQNIPDAET--KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLA 326 (547)
Q Consensus 261 ~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~--~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~~~ 326 (547)
+..||.|+++|+++..| .+|+.|+++.. +++.|.+|. +++||||+++|.||++|+++.|.++
T Consensus 27 ~~~G~~V~vhY~g~l~d---~~G~~FDsS~~rg~P~~f~lG~-g~vI~Gwd~gl~~M~~Ge~~~~~ip 90 (165)
T 2lkn_A 27 FQDGTKATFHYRTLHSD---DEGTVLDDSRARGKPMELIIGK-KFKLPVWETIVCTMREGEIAQFLCD 90 (165)
T ss_dssp CCTTCEEEEECEEECSS---SSCCEEEESTTTTCCEEEESSS-SCSCSHHHHHHTTCCTTCEEEEECC
T ss_pred CCCCCEEEEEEEEEEeC---CCccEEEecccCCCCEEEEecC-CCccHHHHHHHhcCccCceEEEEEC
Confidence 57899999999998544 36888987643 789999994 6899999999999999999999886
No 47
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.39 E-value=0.037 Score=56.03 Aligned_cols=84 Identities=12% Similarity=0.189 Sum_probs=62.0
Q ss_pred CcccccEEEEEEEEeeeccCCCCCcccCCCCccCEEEEecCCC--CCcccHHHhhcCCCCCceEEEEEeCCCCCCCcC--
Q 008989 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGD--KVLPGFLDSISGIQRGETKSFRLAFPESWRQEH-- 335 (547)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~--~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~-- 335 (547)
....||.|+|+|+++ .+|..|+.. ++.|.+|.+. .++++++.+|.+|++|+...+.+.--..|....
T Consensus 40 ~p~~~~~v~v~y~g~------~~g~~fd~~---~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~ 110 (336)
T 1p5q_A 40 KPNEGAIVEVALEGY------YKDKLFDQR---ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE 110 (336)
T ss_dssp CCCTTCEEEEEEEEE------ETTEEEEEE---EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECTTTTTTTTCBG
T ss_pred CCCCCCeEEEEEEEE------ECCEEEecC---CeEEEeCCCCccccchHHHHHHhcCCCCCeEEEEECCccccCcCCCC
Confidence 356899999999998 367777653 7889998532 258999999999999999999885222333221
Q ss_pred ----CCCCeeEEEEEEeEeee
Q 008989 336 ----LRGVQAQFTVECRELFY 352 (547)
Q Consensus 336 ----laGk~~~F~VtVk~Ik~ 352 (547)
-.+....|.+.++.+.+
T Consensus 111 ~~~i~~~~~l~f~~~L~~~~~ 131 (336)
T 1p5q_A 111 KFQIPPNAELKYELHLKSFEK 131 (336)
T ss_dssp GGTBCSSCCEEEEEEEEEEEC
T ss_pred ccCCCCCCeEEEEEEEeeccc
Confidence 12345788889888865
No 48
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=90.73 E-value=2.9 Score=40.39 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcC--Ch
Q 008989 372 TIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALS--SP 449 (547)
Q Consensus 372 Tleelr~~Ik~~l~~~~~~~~~~~~~~~il~~L~e~~~~dlPeslve~e~~~~~~~~~~~l~~~~~~~~e~~~~~~--~~ 449 (547)
|..+|...++... ...+...++.+.+.++.+-++...+.+++.-|++.+..+. .++|++.++|.+.. .+
T Consensus 13 t~~el~~~~~~~~-~~~~~vL~~LI~~~ll~q~A~~~gi~vsd~ev~~~i~~~~--------~~~~~s~~~~~~~L~~~g 83 (252)
T 3rgc_A 13 TTYDIDQTMKALK-IDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKML--------AQNKTTLNAFKANLKSKN 83 (252)
T ss_dssp EHHHHHHHHHHHT-CC-CHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH--------HHTTCCHHHHHHHTCC--
T ss_pred cHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--------HHcCCCHHHHHHHHHHcC
Confidence 4455555444321 0133456667778888888899999999998888776542 24567777765432 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCC-CCHHHHHHHHHHHHH
Q 008989 450 KAVKEFLENQRENITNVIKQNLAVGDIFKR---ENLQ-FSTEDLVKEVENSIA 498 (547)
Q Consensus 450 ~~~ee~~e~~~~~A~k~vK~~Lil~~Iak~---E~I~-VteeEi~~ei~~~~~ 498 (547)
-+.++|+ ..+|..|++.++... .+|. ||++||+++++....
T Consensus 84 ~t~~~~~--------~~ir~~l~~~~l~~~~~~~~v~vvtd~ei~~yy~~~~~ 128 (252)
T 3rgc_A 84 QSYEQFR--------TNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKD 128 (252)
T ss_dssp -CHHHHH--------HHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHTCGG
T ss_pred CCHHHHH--------HHHHHHHHHHHHHHHHHhccCccCCHHHHHHHHHhCHH
Confidence 2334443 234445555555543 3678 699999998876543
No 49
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=90.50 E-value=0.82 Score=44.30 Aligned_cols=80 Identities=10% Similarity=0.080 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH-------H----hccCCCCHHHHHHHHHHhhhhHHHHHHHh
Q 008989 462 NITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAEL-------K----QQKQEYDEDRVREQVSTFSYVGLIFCGIM 530 (547)
Q Consensus 462 ~A~k~vK~~Lil~~Iak~E~I~VteeEi~~ei~~~~~~~-------~----~~g~~~~~~~l~e~~~e~~~~~~~~~~lm 530 (547)
++...+=..-++..-|++.||.||+++|++.+.++..++ . +.| ++++.++++++..+..+.++..++
T Consensus 30 ~vL~~LI~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~~~~~s~~~~~~~L~~~g--~t~~~~~~~ir~~l~~~~l~~~~~ 107 (252)
T 3rgc_A 30 KALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKN--QSYEQFRTNFKKDLEKRKLYEKIA 107 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCHHHHHHHTCC-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566677889999999999999998875422 1 122 477888888888888888887777
Q ss_pred hh----hcccchhhhhh
Q 008989 531 QS----QNSSHISCFWN 543 (547)
Q Consensus 531 ~~----~~~~~~~~~~~ 543 (547)
.. ++..-|--||+
T Consensus 108 ~~~v~vvtd~ei~~yy~ 124 (252)
T 3rgc_A 108 SMAKTDFSDDGAKKFFE 124 (252)
T ss_dssp TTSCCCCCHHHHHHHHH
T ss_pred hccCccCCHHHHHHHHH
Confidence 64 25555666654
No 50
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=89.86 E-value=0.56 Score=49.44 Aligned_cols=84 Identities=11% Similarity=0.140 Sum_probs=60.9
Q ss_pred CcccccEEEEEEEEeeeccCCCCCcccCCCCccCEEEEecCC--CCCcccHHHhhcCCCCCceEEEEEeCCCCCCCcCC-
Q 008989 260 GLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDG--DKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHL- 336 (547)
Q Consensus 260 ~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~--~~~ip~fe~~LiG~k~Ge~~~~~~~fPedy~~~~l- 336 (547)
....||.|+++|++. .+|..|+. .++.|.+|.+ ..++++++.++.+|+.|+...+.+.---.|.....
T Consensus 161 ~p~~g~~V~v~y~g~------~~g~~f~~---~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~ 231 (457)
T 1kt0_A 161 NPNEGATVEIHLEGR------CGGRMFDC---RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP 231 (457)
T ss_dssp CCCTTCEEEEEEEEE------ETTEEEEE---EEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBG
T ss_pred CCCCCCEEEEEEEEE------eCCeEEec---CceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCc
Confidence 467899999999998 45766664 4688888843 24788999999999999999998853223433221
Q ss_pred -----CCCeeEEEEEEeEeee
Q 008989 337 -----RGVQAQFTVECRELFY 352 (547)
Q Consensus 337 -----aGk~~~F~VtVk~Ik~ 352 (547)
.+..+.|.+.+....+
T Consensus 232 ~~~ip~~~~l~y~~~l~~~~~ 252 (457)
T 1kt0_A 232 KFGIEPNAELIYEVTLKSFEK 252 (457)
T ss_dssp GGTBCTTCCEEEEEEEEEEEC
T ss_pred ccCCCCCCEEEEEhhhhhccc
Confidence 1245688888887755
No 51
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=86.55 E-value=3.8 Score=42.20 Aligned_cols=83 Identities=11% Similarity=0.117 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-----------HHhccCCCCHHHHHHHHHHhhhhHHHHH
Q 008989 459 QRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAE-----------LKQQKQEYDEDRVREQVSTFSYVGLIFC 527 (547)
Q Consensus 459 ~~~~A~k~vK~~Lil~~Iak~E~I~VteeEi~~ei~~~~~~-----------~~~~g~~~~~~~l~e~~~e~~~~~~~~~ 527 (547)
++.++.+.+-..-++..-|++.||.||+++|++.+.++..+ +.+.|. +++.++++++..+..+.+..
T Consensus 46 ~~~~vl~~LI~~~ll~q~A~~~gi~vs~~ev~~~i~~~~~~~~~~~~~~~~~L~~~g~--t~~~~~~~~r~~l~~~~l~~ 123 (408)
T 1m5y_A 46 LRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGL--NYNTYRNQIRKEMIISEVRN 123 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777899999999999999998876542 123343 56666667776666666665
Q ss_pred HHhhh---hcccchhhhhh
Q 008989 528 GIMQS---QNSSHISCFWN 543 (547)
Q Consensus 528 ~lm~~---~~~~~~~~~~~ 543 (547)
.++.. .....|--||+
T Consensus 124 ~~~~~~~~vsd~ei~~~y~ 142 (408)
T 1m5y_A 124 NEVRRRITILPQEVESLAQ 142 (408)
T ss_dssp HHHHHTCCCCTTHHHHHHH
T ss_pred HHhcCCCCCCHHHHHHHHH
Confidence 55442 34444555554
No 52
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=85.30 E-value=4.4 Score=40.80 Aligned_cols=95 Identities=11% Similarity=0.127 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcC---ChhHHHHHHHHHHHHHHHH
Q 008989 390 TAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALS---SPKAVKEFLENQRENITNV 466 (547)
Q Consensus 390 ~~~~~~~~~~il~~L~e~~~~dlPeslve~e~~~~~~~~~~~l~~~~~~~~e~~~~~~---~~~~~ee~~e~~~~~A~k~ 466 (547)
...++.+.+.++.+-+++..+.+++.-|++.+...+.. .++++.++|.... .+-+.++|+ ..
T Consensus 56 ~vL~~LI~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~~-------~~~~~~~~~~~~L~~~~g~t~~~~~--------~~ 120 (325)
T 3nrk_A 56 RIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEV-------MGITNRKQFEKTMETSSGMPFELWV--------TE 120 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHCSCHHHHG--------GG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHcCCCHHHHH--------HH
Confidence 34455566777778888889999999998877762211 1234544432210 011223332 23
Q ss_pred HHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHH
Q 008989 467 IKQNLAVGDIFKRENLQF---STEDLVKEVENSIAEL 500 (547)
Q Consensus 467 vK~~Lil~~Iak~E~I~V---teeEi~~ei~~~~~~~ 500 (547)
+|..|++.++.. .++.| |++||.+.++.....|
T Consensus 121 lr~~l~~~~lv~-~~v~v~~Ptd~ei~~yy~~~~~~~ 156 (325)
T 3nrk_A 121 LPYQIKKGQLLQ-LKIAVPPPNEQEIRSWYNQNKDKV 156 (325)
T ss_dssp HHHHHHHHHHHH-HTCCCCCCCHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHhhhhc
Confidence 444444444433 47899 9999999988766554
No 53
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=83.91 E-value=8.4 Score=39.61 Aligned_cols=95 Identities=4% Similarity=0.036 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcC--ChhHHHHHHHHHHHHHHHHHH
Q 008989 391 AKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALS--SPKAVKEFLENQRENITNVIK 468 (547)
Q Consensus 391 ~~~~~~~~~il~~L~e~~~~dlPeslve~e~~~~~~~~~~~l~~~~~~~~e~~~~~~--~~~~~ee~~e~~~~~A~k~vK 468 (547)
..++.+.+.++.+-++...+.+++..|++.+..+.. ..|++.++|.... .+-+.+.|++.+ ++.+.
T Consensus 50 vl~~LI~~~ll~q~A~~~gi~vs~~ev~~~i~~~~~--------~~~~~~~~~~~~L~~~g~t~~~~~~~~----r~~l~ 117 (408)
T 1m5y_A 50 IMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAK--------QNNMTLDQMRSRLAYDGLNYNTYRNQI----RKEMI 117 (408)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--------HTTCCHHHHHHHHHHHTCCHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHcCCCHHHHHHHH----HHHHH
Confidence 344556677777778888899999988877665432 2466766654321 111233443322 22233
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008989 469 QNLAVGDIFKRENLQFSTEDLVKEVENSIA 498 (547)
Q Consensus 469 ~~Lil~~Iak~E~I~VteeEi~~ei~~~~~ 498 (547)
+.-++..+.. .++.||++|+++.++....
T Consensus 118 ~~~l~~~~~~-~~~~vsd~ei~~~y~~~~~ 146 (408)
T 1m5y_A 118 ISEVRNNEVR-RRITILPQEVESLAQQVGN 146 (408)
T ss_dssp HHHHHHHHHH-HTCCCCTTHHHHHHHCC--
T ss_pred HHHHHHHHhc-CCCCCCHHHHHHHHHhhhh
Confidence 3333333322 3789999999988775544
No 54
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=72.41 E-value=12 Score=37.61 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008989 459 QRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVEN 495 (547)
Q Consensus 459 ~~~~A~k~vK~~Lil~~Iak~E~I~VteeEi~~ei~~ 495 (547)
++.++...+=..-++..-|++.||.||+++|++++.+
T Consensus 53 ~~~~vL~~LI~~~ll~q~A~~~gi~vsd~ev~~~i~~ 89 (325)
T 3nrk_A 53 FRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEK 89 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 3455666666666777778999999999999999988
No 55
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=71.95 E-value=5 Score=36.29 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC-------C----HHHHHHHHHHhhhhHHHHHHHhhh
Q 008989 469 QNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEY-------D----EDRVREQVSTFSYVGLIFCGIMQS 532 (547)
Q Consensus 469 ~~Lil~~Iak~E~I~VteeEi~~ei~~~~~~~~~~g~~~-------~----~~~l~e~~~e~~~~~~~~~~lm~~ 532 (547)
..=++++|++.-++.+-+.+++..+.+...+++++|.++ + .+.++.++.+.+..+.+++.|.+.
T Consensus 30 ~~~vld~l~e~~~~~lve~e~~~~~~~~~~~l~~~g~~~~~~~~~~~~e~~~e~~~~~A~~~vk~~lil~~ia~~ 104 (170)
T 2nsa_A 30 REQLLEKLPEIVEIEISDRTLEILVNEAINRLKREGRYEQIVSSYESEEKFREELKERILDDIKRDRVIEVLAQE 104 (170)
T ss_dssp HHHHHHHGGGGCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCCHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344679999999999999999998888887777777532 4 344566666667777777776654
No 56
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=70.15 E-value=22 Score=31.84 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=24.3
Q ss_pred cHHHhhcCCCCCceEEEEEeCCCCCCCcCCCCCeeEEEEEEeEee
Q 008989 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (547)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~~~fPedy~~~~laGk~~~F~VtVk~Ik 351 (547)
.+-.+|+|+++||++++..+ .| ..+++|.+|.
T Consensus 124 PlG~ALlGk~~GD~v~~~~p----------~G---~~~~~I~~I~ 155 (156)
T 2f23_A 124 PMGKALLGHRVGDVLSLDTP----------KG---KREFRVVAIH 155 (156)
T ss_dssp HHHHHHTTCCTTCEEEEEET----------TE---EEEEEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEcC----------CC---cEEEEEEEEE
Confidence 47899999999999988763 23 2466777775
No 57
>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7
Probab=68.30 E-value=17 Score=30.34 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=34.2
Q ss_pred eeEEEEEEeEeeecCCCCCCHHHHhhhCCCCCCHHHHHHHHHH
Q 008989 340 QAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQ 382 (547)
Q Consensus 340 ~~~F~VtVk~Ik~~~lPELdDEfak~l~~~~~Tleelr~~Ik~ 382 (547)
...+.+.|.+|....+-+++|++|..= |. |+++||+.+++
T Consensus 48 ~~~~~i~vt~V~~~~~~eitee~A~~E--G~-sl~~~~~~~~~ 87 (103)
T 1te7_A 48 GYFCTIEVTATSTVTLDTLTEKHAEQE--NM-TLTELKKVIAD 87 (103)
T ss_dssp EEEEEEEEEEEEEECSTTTSTHHHHHT--TS-CHHHHHHHHHH
T ss_pred cEEEEEEEEEEEEEcHHHhCHHHHHHc--CC-CHHHHHHHHHH
Confidence 356788999999999999999999865 55 99999998876
No 58
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=59.94 E-value=21 Score=32.14 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=25.8
Q ss_pred cHHHhhcCCCCCceEEEEEeCCCCCCCcCCCCCeeEEEEEEeEeee
Q 008989 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFY 352 (547)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~~~fPedy~~~~laGk~~~F~VtVk~Ik~ 352 (547)
.+-.+|+|+++||++++.+ | .| ..+++|.+|..
T Consensus 123 Plg~ALlGk~vGD~v~v~~--P--------~G---~~~~~I~~I~~ 155 (158)
T 2p4v_A 123 PMARALLKKEVGDLAVVNT--P--------AG---EASWYVNAIEY 155 (158)
T ss_dssp HHHHHSTTCCTTCEEEEEC--S--------SC---EEEEEEEEEEC
T ss_pred HHHHHhcCCCCCCEEEEEc--C--------CC---cEEEEEEEEEe
Confidence 4789999999999988766 3 24 25778888874
No 59
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=59.06 E-value=49 Score=34.60 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh----ccC---CCCHHHHHHHHHHhhhhHHHHHHHhhh
Q 008989 466 VIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQ----QKQ---EYDEDRVREQVSTFSYVGLIFCGIMQS 532 (547)
Q Consensus 466 ~vK~~Lil~~Iak~E~I~VteeEi~~ei~~~~~~~~~----~g~---~~~~~~l~e~~~e~~~~~~~~~~lm~~ 532 (547)
.-...=+++++.+...+.+.+.=|+.++..+.+++.+ +|. .+..+.++.+....++.+.+++.|.+.
T Consensus 284 ~~~~~~v~~~l~e~~~~~lP~~lv~~e~~~~~~~~~~~l~~~g~~~~~~~~e~~~~~Ae~~vk~~Lil~~Ia~~ 357 (432)
T 1w26_A 284 NRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRT 357 (432)
T ss_dssp HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHTTTTCCTTSSTTSCGGGTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667899999999999999999999988877642 232 122445677888888888777777665
No 60
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=49.54 E-value=20 Score=31.36 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=26.2
Q ss_pred cHHHhhcCCCCCceEEEEEeCCCCCCCcCCCCCeeEEEEEEeEeee
Q 008989 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFY 352 (547)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~~~fPedy~~~~laGk~~~F~VtVk~Ik~ 352 (547)
.+-.+|+|+++||++++.. |. |+ ..+++|.+|..
T Consensus 93 PlG~ALlGk~~GD~v~v~~--p~--------G~--~~~~~I~~I~~ 126 (136)
T 3bmb_A 93 PVGAALLGLRVGDSIHWEL--PG--------GV--ATHLEVLELEY 126 (136)
T ss_dssp HHHHHHTTCBTTCEEEEEE--TT--------TE--EEEEEEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEc--CC--------CC--EEEEEEEEEEe
Confidence 4789999999999999876 32 42 35677888874
No 61
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=47.88 E-value=38 Score=32.27 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCCcccHHHhhcCCCCCceEE--EEEeCCCCCCCcCCCCCeeEEEEEEeEeeecCCCCCCHHHHhhhCCCCCCHHHHHHH
Q 008989 302 DKVLPGFLDSISGIQRGETKS--FRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKET 379 (547)
Q Consensus 302 ~~~ip~fe~~LiG~k~Ge~~~--~~~~fPedy~~~~laGk~~~F~VtVk~Ik~~~lPELdDEfak~l~~~~~Tleelr~~ 379 (547)
+.+.|.|.+++.++++|+.-. |...| . ..-|.|.+++.. ...+.++.|..
T Consensus 171 ~~l~~~f~~a~~~l~~G~is~~pv~t~~--G-----------~hii~v~~~~~~---------------~~~~~e~vk~~ 222 (252)
T 3rfw_A 171 STMVKPFTDAAFALKNGTITTTPVKTNF--G-----------YHVILKENSQAK---------------GQIKFDEVKQG 222 (252)
T ss_dssp SSSCHHHHHHHHHSCTTEECSSCEEETT--E-----------EEEEEEEEEECC---------------EECCHHHHHHH
T ss_pred ccccHHHHHHHHcCCCCCccCceEEECC--E-----------EEEEEEEEecCC---------------CCCCHHHHHHH
Confidence 468899999999999998652 44322 1 222445555321 12367889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008989 380 LLQKCREVEQTAKDQATDNAILDQLYKMVEIDI 412 (547)
Q Consensus 380 Ik~~l~~~~~~~~~~~~~~~il~~L~e~~~~dl 412 (547)
|+..|..+.... ...+.++.|.++..+++
T Consensus 223 I~~~L~~~k~~~----~~~~~~~~Lr~~a~I~i 251 (252)
T 3rfw_A 223 IENGLKFEEFKK----VINQKGQDLLNSAKVEY 251 (252)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHhhCeeee
Confidence 998887765543 44667788888877765
No 62
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae}
Probab=46.99 E-value=13 Score=35.63 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHhccCCCCHHHHHHHHHHhhhhHHHHHHHhhhh
Q 008989 465 NVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAE-LKQQKQEYDEDRVREQVSTFSYVGLIFCGIMQSQ 533 (547)
Q Consensus 465 k~vK~~Lil~~Iak~E~I~VteeEi~~ei~~~~~~-~~~~g~~~~~~~l~e~~~e~~~~~~~~~~lm~~~ 533 (547)
+.-...=+++++.+...+.|.+.|++..++++..+ +++ + +.+.++++....++.+.++++|.+.-
T Consensus 87 ~~~~k~~vld~Lve~~e~evPeaEv~~l~~q~~q~~l~~--q--~~e~~re~AErRVKlgLvL~eIak~e 152 (218)
T 1zxj_A 87 KDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDVIQG--A--EDNTVQAIAEKIIKKALVFNHLQKEW 152 (218)
T ss_dssp HHHHHHHHHHHHGGGEEEECCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhc--c--CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445568899999999999999555555554443 321 1 33778899999899888888887653
No 63
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=46.80 E-value=56 Score=34.24 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc------CC-CCHH----HHHHHHHHhhhhHHHHHHHhhhh
Q 008989 468 KQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQK------QE-YDED----RVREQVSTFSYVGLIFCGIMQSQ 533 (547)
Q Consensus 468 K~~Lil~~Iak~E~I~VteeEi~~ei~~~~~~~~~~g------~~-~~~~----~l~e~~~e~~~~~~~~~~lm~~~ 533 (547)
...-+++++.+...+.+.+.-|+.++..+..++.+.| .. -+.+ .++.+....++.+.+++.|.+.-
T Consensus 271 ~~~~v~~~l~e~~~~~lP~~lv~~e~~~~~~~l~~q~~~~~~l~~~~~~e~~~e~~~~~Ae~~vk~~Lil~~Ia~~e 347 (433)
T 3gty_X 271 MREQLLEKLPEIVEIEISDRTLEILVNEAINRLKREGRYEQIVSSYESEEKFREELKERILDDIKRDRVIEVLAQEK 347 (433)
T ss_dssp HHHHHHHTHHHHCEEECCHHHHHHHHHHHHHHHHTTTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445889999999999999999998888766553321 10 1223 35555555666677777776643
No 64
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=43.59 E-value=23 Score=31.88 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=20.9
Q ss_pred cHHHhhcCCCCCceEEEEEeCCCCCCCcCCCCCeeEEEEEEeEee
Q 008989 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351 (547)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~~~fPedy~~~~laGk~~~F~VtVk~Ik 351 (547)
.+-.+|+|+++||++++.+ | .|. .+++|.+|.
T Consensus 125 PlG~ALlGk~~GD~v~v~~--p--------~G~---~~~~I~~I~ 156 (158)
T 1grj_A 125 PIARGLIGKEEDDVVVIKT--P--------GGE---VEFEVIKVE 156 (158)
T ss_dssp HHHHHHTTCBTTCEECC-------------------CCEEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEc--C--------CCc---EEEEEEEEE
Confidence 4789999999999988765 3 242 356677775
No 65
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=43.49 E-value=1.6e+02 Score=27.69 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008989 462 NITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIA 498 (547)
Q Consensus 462 ~A~k~vK~~Lil~~Iak~E~I~VteeEi~~ei~~~~~ 498 (547)
.+++.+-+...++.+. .++.||++|+.+.++....
T Consensus 71 ~~r~~l~~~~~~~~~~--~~~~vtd~ei~~~Y~~~~~ 105 (252)
T 3rfw_A 71 RAKDAILVNVYQEKIL--NTIKIDAAKVKAFYDQNKD 105 (252)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHh--ccCCCCHHHHHHHHHHhHH
Confidence 4445555666667766 4799999999998877654
No 66
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=38.37 E-value=26 Score=30.92 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=25.9
Q ss_pred cHHHhhcCCCCCceEEEEEeCCCCCCCcCCCCCeeEEEEEEeEeee
Q 008989 307 GFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFY 352 (547)
Q Consensus 307 ~fe~~LiG~k~Ge~~~~~~~fPedy~~~~laGk~~~F~VtVk~Ik~ 352 (547)
.+-.+|+|+++||++++.. |. |+. .+++|.+|..
T Consensus 96 PlG~ALlGk~vGD~v~v~~--P~--------G~~--~~~~I~~I~~ 129 (141)
T 2pn0_A 96 PVGSALLGLAQGDEIEWPK--PG--------GGV--LRVRIVEVTY 129 (141)
T ss_dssp TTHHHHTTCBTTCEEEEEC--TT--------SSE--EEEEEEEEEC
T ss_pred HHHHHHcCCCCCCEEEEEc--CC--------CCE--EEEEEEEEEe
Confidence 4689999999999988766 42 433 5677788874
No 67
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=30.54 E-value=39 Score=34.90 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-ccC------CCCHHHHHHHH
Q 008989 451 AVKEFLENQRENITNVIK-------QNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQ-QKQ------EYDEDRVREQV 516 (547)
Q Consensus 451 ~~ee~~e~~~~~A~k~vK-------~~Lil~~Iak~E~I~VteeEi~~ei~~~~~~~~~-~g~------~~~~~~l~e~~ 516 (547)
++++|++..+++.++..+ ..-+++++++...+.+.+.=|++++..+.+++.+ .++ .+..+.++.+.
T Consensus 265 tleelk~~ir~~l~~~~~~~~~~~~~~~v~~~l~e~~~~~lP~~lv~~e~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~A 344 (392)
T 1t11_A 265 GVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVLRQQAAQRFGGNVEAAAQLPRELFEEQA 344 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTBCSCCCEEECHHHHHHHHHHHHHHHHHHSSCSHHHHTTSCGGGTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Confidence 445555554444433332 3345678888889999999999999988876643 222 12344467777
Q ss_pred HHhhhhHHHHHHHhhhh
Q 008989 517 STFSYVGLIFCGIMQSQ 533 (547)
Q Consensus 517 ~e~~~~~~~~~~lm~~~ 533 (547)
...++.+.+++.|.+.-
T Consensus 345 e~~vk~~Lil~~ia~~e 361 (392)
T 1t11_A 345 KRRVVVGLLLGEVIRTH 361 (392)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77788888888877653
No 68
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=27.73 E-value=39 Score=27.91 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhCCcCCCCCCC
Q 008989 113 CKDSYKRVLNELMKQVKIPGFRPGK 137 (547)
Q Consensus 113 v~~~~~k~l~~~~k~~~IPGFRkGK 137 (547)
--+.+-+.+++.+..-+.|||+.|-
T Consensus 63 SPEgIv~~IKeWRa~nG~pgFK~~~ 87 (94)
T 3u43_A 63 SPEGIVKEIKEWRAANGKSGFKQGL 87 (94)
T ss_dssp SHHHHHHHHHHHHHHTTCCCCBCCS
T ss_pred CHHHHHHHHHHHHHHcCCccchhhH
Confidence 3456667889999999999999993
No 69
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=25.69 E-value=51 Score=26.84 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhCCcCCCCCC
Q 008989 114 KDSYKRVLNELMKQVKIPGFRPG 136 (547)
Q Consensus 114 ~~~~~k~l~~~~k~~~IPGFRkG 136 (547)
-+.+=+.+++.+..-+.|||+.|
T Consensus 65 PEgIv~~iKeWRa~nG~pgFK~~ 87 (87)
T 1unk_A 65 PEGIVKEIKEWRAANGKPGFKQG 87 (87)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHcCCcccCCC
Confidence 35566788999999999999988
No 70
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=25.43 E-value=1.2e+02 Score=21.50 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008989 372 TIEQVKETLLQKCREVEQTAKDQATDNAILDQLY 405 (547)
Q Consensus 372 Tleelr~~Ik~~l~~~~~~~~~~~~~~~il~~L~ 405 (547)
+++.||+.|-+++..+.+. +++.|++++.
T Consensus 8 dle~~KqEIL~E~RkElqK-----~K~EIIeAi~ 36 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQK-----VKEEIIEAFV 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 4677777777777665543 5566666654
No 71
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=25.23 E-value=50 Score=26.73 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhCCcCCCCCC
Q 008989 113 CKDSYKRVLNELMKQVKIPGFRPG 136 (547)
Q Consensus 113 v~~~~~k~l~~~~k~~~IPGFRkG 136 (547)
--+.+-+.+++++..-+.|||+.|
T Consensus 62 spE~Iv~~ik~wRa~~g~p~Fk~~ 85 (85)
T 1gxg_A 62 SPEAVIKEIKEWRAANGKSGFKQG 85 (85)
T ss_dssp SHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred CHHHHHHHHHHHHHHcCCcccCCC
Confidence 345566778999999999999988
No 72
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=25.00 E-value=45 Score=27.06 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhCCcCCCCCC
Q 008989 113 CKDSYKRVLNELMKQVKIPGFRPG 136 (547)
Q Consensus 113 v~~~~~k~l~~~~k~~~IPGFRkG 136 (547)
--+.+-+.+++++..-+.|||+.|
T Consensus 63 spE~Iv~~ik~wRa~~G~pgFK~~ 86 (86)
T 1fr2_A 63 SPSGIVNTVKQWRAANGKSGFKQG 86 (86)
T ss_dssp SHHHHHHHHHHHHHHTTCCCCBC-
T ss_pred CHHHHHHHHHHHHHHcCCcccCCC
Confidence 345566778999999999999987
No 73
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=20.47 E-value=2.5e+02 Score=24.50 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=25.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHH-HHhccCCCCHHHHHHHH
Q 008989 473 VGDIFKRENLQFSTEDLVKEVENSIAE-LKQQKQEYDEDRVREQV 516 (547)
Q Consensus 473 l~~Iak~E~I~VteeEi~~ei~~~~~~-~~~~g~~~~~~~l~e~~ 516 (547)
-..||+.|||++|++-.+ +-+.+++ |.+||....--.|-+.+
T Consensus 51 A~~lA~~EgIeLTe~HWe--VI~flR~fY~e~~~sP~iR~L~K~~ 93 (132)
T 1yx3_A 51 ADVMAKQDNLELTEEHWD--IINFLREYYEEYQIAPAVRVLTKAV 93 (132)
T ss_dssp HHHHHHTTTCCCCHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHH--HHHHHHHHHHHHCCCChHHHHHHHH
Confidence 346899999999999654 2222322 45777754444444444
Done!